BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005559
(691 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55C58|VPS16_DICDI Vacuolar protein sorting-associated protein 16 homolog
OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2
Length = 832
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 251/684 (36%), Positives = 398/684 (58%), Gaps = 30/684 (4%)
Query: 6 VAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESAL 65
+AA+W+++ N Y K E+Y M W +DL + +PF GPIAV+RD SK V++ +++
Sbjct: 2 IAAQWKIIGNSTYIKKEIYSMSW-DVDLKQQVSVGSPFAGPIAVMRDSSKFVEMNSQNMK 60
Query: 66 RKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNAS 125
L+IF ++G LIS+ +W + ++ M W E + L+ V+Q+ TV +N+ E + S
Sbjct: 61 PYLKIFTASGDLISQMIW-DSSKNIVAMDWIEKERLVIVLQNATVLIFNVFCEQM-TQFS 118
Query: 126 MGKECFEENVVECVFWGNGVVCVTEANRYFC---MADFATMKVCELARPEVEELPHCV-- 180
+G EE ++EC W +G+V +T A++ + + DF + P + E P
Sbjct: 119 LGDIVREEEILECKIWSDGIVVLTSASQLYSVPSINDFFVESGRVIRLPPLPEEPKARPE 178
Query: 181 -AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLS--QKMAVSPNGNFVACFTHD 237
A++EP+++++ S+E+ + + + ++DED V+ + QKM VSP G +ACF
Sbjct: 179 WAILEPQFSLSQSIEIFMSINGTLYLIDEDKVESQLEATEPIQKMVVSPCGKKLACFDTK 238
Query: 238 GRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDM----LVMVAPQAEPVQY 293
G L++ T+ S+ D A + WCG D V++YW+ + L + ++
Sbjct: 239 GTLLILKTDGSTTNPDRMDTKATKSPVLKWCGSDGVMMYWDSIKDPILFYFSKGDSWAKF 298
Query: 294 FYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSA 353
D+P+ L+ E DG+RI+S+++ EF +V T IF IG+TSPA++LYDA DHF +S
Sbjct: 299 TLDQPVSLVTEIDGLRIISDTTSEFFHKVSDVTIDIFKIGTTSPASILYDATDHFISKSP 358
Query: 354 KADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCK 413
+ADE++R I L AV CI AAG EF+ Q LL+AAS+G+ F N+ + MC+
Sbjct: 359 QADESIRSINDQLEDAVNDCILAAGFEFNGGEQSKLLKAASFGKCFLENYNPSQFVTMCR 418
Query: 414 TLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMH 473
+LRVLNA R EIGIPLSI+QY + LI RLI+ HLLA RI +YL + +VV+ H
Sbjct: 419 SLRVLNAVRHHEIGIPLSIKQYYHIGIEELIDRLISRRKHLLAWRICDYLKIKSDVVLNH 478
Query: 474 WACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSS 533
WAC+K+ IPD L +I++ KL+ GIS+A +A+ A +GR KLA L+E+EP+++
Sbjct: 479 WACTKVRTD--IPDQELGKIIIKKLESVPGISFANIASAAYLAGRSKLATKLLEYEPKAA 536
Query: 534 KQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTV 593
+QVP L+ +GE AL KA ESGDTDLVYLV+ + + P +F + ++ +A DL
Sbjct: 537 EQVPPLIKMGESGLALNKAIESGDTDLVYLVLLAMQRSLPLADFLELTFSKVVALDLLIS 596
Query: 594 YARCYKHEF--LKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKA- 650
+ K++F L++ + Q +E+ + +E+ ++S+ S L RIK K+
Sbjct: 597 MCK-QKNDFPLLREIYHIKDQSKEMGNIYLQEA-------LSSHPSQLDQ-RIKAYNKSI 647
Query: 651 -HSLFSETKEHTFESKAAEEHAKL 673
H S+ K+ SK ++ KL
Sbjct: 648 EHYHHSKDKDDQATSKFIDDQIKL 671
>sp|Q9H269|VPS16_HUMAN Vacuolar protein sorting-associated protein 16 homolog OS=Homo
sapiens GN=VPS16 PE=1 SV=2
Length = 839
Score = 352 bits (903), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 231/678 (34%), Positives = 364/678 (53%), Gaps = 44/678 (6%)
Query: 17 YYRKPELYQMRWKHIDLSRN-KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG 75
+YRK ELY M W + R+ VA AP+GGPIA++R+ + + A S L I++++G
Sbjct: 16 FYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEK--AASVRPVLDIYSASG 73
Query: 76 VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENV 135
+ ++ +WK+ G ++ + WS ++ L+CV +DG V Y +H + + SMG E + V
Sbjct: 74 MPLASLLWKS--GPVVSLGWSAEEELLCVQEDGAVLVYGLHGDF-RRHFSMGNEVLQNRV 130
Query: 136 VEC-VF---WGNGVVCVTEANRYFCMADFATMKVCELAR-PEVEELPHCVAVIEPKYTMT 190
++ +F +G+GV +T A+R+ A+ +K+ + P ++ P C V+
Sbjct: 131 LDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCWTVL----CQD 186
Query: 191 GSVEVLIGTDAGILMLDEDGVQKVDD-------TLSQKMAVSPNGNFVACFTHDGRLVVN 243
+L+ + +LD V + +MAVS +A FT G + +
Sbjct: 187 RVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDTGYIWMG 246
Query: 244 NTNFSSPVIDESCESALPPEQIAWCGMD-----SVLLYWNDMLVMVAPQAEPVQYFYDEP 298
+ + + +C PP+Q+ WC +V++ W L++V E +Q+ DE
Sbjct: 247 TASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQFVLDED 306
Query: 299 LVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADEN 358
L+PE DGVRI S S+ EFL VPA++E+IF I S +P ALL +A +++ S KADE
Sbjct: 307 SYLVPELDGVRIFSRSTHEFLHEVPAASEEIFKIASMAPGALLLEAQKEYEKESQKADEY 366
Query: 359 LRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLR 416
LR I+ L +AV+ CI+AAGHE Q++LLRAAS+G+ F F D MC+ LR
Sbjct: 367 LREIQELGQLTQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVHMCQDLR 426
Query: 417 VLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVVIM 472
VLNA RD IGIPL+ QYK LT VL+ RL+ + LA++I EYL + + ++
Sbjct: 427 VLNAVRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILA 486
Query: 473 HWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRS 532
HWAC K+ + D + + KL G+SY+ +AA A GR +LA L+E+EPRS
Sbjct: 487 HWACYKVQQK-DVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRS 545
Query: 533 SKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFT 592
+QVPLLL + AL KA ESGDTDLV+ V+ H+ + +FF ++ +P+A L+
Sbjct: 546 GEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYR 605
Query: 593 VYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHS 652
+ + + E LKD + QE+ + S+ + + G R+ ++ A
Sbjct: 606 QFCKHQELETLKDLYNQDDNHQELGSFHIRASY--------AAEERIEG-RVAALQTAAD 656
Query: 653 LFSETKEHTFESKAAEEH 670
F + K + F +KA E+
Sbjct: 657 AFYKAK-NEFAAKATEDQ 673
>sp|Q5E9L7|VPS16_BOVIN Vacuolar protein sorting-associated protein 16 homolog OS=Bos
taurus GN=VPS16 PE=2 SV=1
Length = 839
Score = 351 bits (900), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 233/680 (34%), Positives = 364/680 (53%), Gaps = 48/680 (7%)
Query: 17 YYRKPELYQMRWKHIDLSRN-KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG 75
+YRK ELY M W + R+ VA AP+GGPIA++R+ + + SA L I++++G
Sbjct: 16 FYRKYELYSMDWDLKEELRDCLVAAAPYGGPIALLRNPWRKEK--PASARPVLEIYSASG 73
Query: 76 VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENV 135
V ++ +WK+ G ++ + WS ++ L+CV +DG V Y +H + + SMG E + V
Sbjct: 74 VPLASLLWKS--GPVVSLGWSAEEELLCVQEDGVVLVYGLHGDF-RRHFSMGNEVLQNRV 130
Query: 136 VEC-VF---WGNGVVCVTEANRYFCMADFATMKVCELARPEVEEL---PHCVAVIEPKYT 188
++ +F +G+GV +T A+R+ A+ +K+ + PEV L P C +
Sbjct: 131 LDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRM--PEVPGLXSAPSCWTTV----C 184
Query: 189 MTGSVEVLIGTDAGILMLDEDGVQKVDD-------TLSQKMAVSPNGNFVACFTHDGRLV 241
+L+ + +LD V + +MAVS +A FT G +
Sbjct: 185 QDRVAHILLAVGPDLYLLDHAACSAVTPPGLAPGVSSFLQMAVSFTYRHLALFTDTGYIW 244
Query: 242 VNNTNFSSPVIDESCESALPPEQIAWCGMD-----SVLLYWNDMLVMVAPQAEPVQYFYD 296
+ + + + +C PP+Q+ WC +V++ W L++V E +Q+ D
Sbjct: 245 MGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQFVLD 304
Query: 297 EPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKAD 356
E L+PE DGVR+ S S+ EFL VP ++E+IF I S +P ALL +A +++ S KAD
Sbjct: 305 EDSYLVPELDGVRVFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKESQKAD 364
Query: 357 ENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKT 414
E LR I+ LP+AV+ CI+AAGHE Q++LLRAAS+G+ F F D MC+
Sbjct: 365 EYLREIQELGQLPQAVQQCIEAAGHEHWPDMQKSLLRAASFGKCFLDRFPPDSFVRMCQD 424
Query: 415 LRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVV 470
LRVLNA RD IGIPL+ QYK LT VL+ RL+ + LA++I EYL + + +
Sbjct: 425 LRVLNAIRDYHIGIPLTYSQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRI 484
Query: 471 IMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEP 530
+ HWAC K+ + D + + KL G+SY+ +AA A GR +LA L+E+EP
Sbjct: 485 LAHWACYKVQQK-DVSDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEP 543
Query: 531 RSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDL 590
RS +QVPLLL + AL KA ESGDTDLV+ V+ H+ + +FF ++ +P+A L
Sbjct: 544 RSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSL 603
Query: 591 FTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKA 650
+ + + + E LKD + QE+ + S+ + + G R+ ++ A
Sbjct: 604 YRQFCKHQELETLKDLYNQDDNHQELGSFHIRASY--------AAEERIEG-RVAALQTA 654
Query: 651 HSLFSETKEHTFESKAAEEH 670
F + K + F +KA E+
Sbjct: 655 ADAFYKAK-NEFAAKATEDQ 673
>sp|Q920Q4|VPS16_MOUSE Vacuolar protein sorting-associated protein 16 homolog OS=Mus
musculus GN=Vps16 PE=1 SV=3
Length = 839
Score = 349 bits (896), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 235/691 (34%), Positives = 367/691 (53%), Gaps = 58/691 (8%)
Query: 17 YYRKPELYQMRWK-HIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG 75
+YRK ELY M W +L VA AP+GGPIA++R+ + + A S L I++++G
Sbjct: 16 FYRKYELYSMDWDLKEELKDCLVAAAPYGGPIALLRNCWRKEK--AASVRPVLEIYSASG 73
Query: 76 VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENV 135
+ ++ +WK+ G ++ + WS ++ L+CV +DG V Y +H + + SMG E + V
Sbjct: 74 LPLASLLWKS--GPVVALGWSAEEELLCVQEDGAVLVYGLHGDF-RRHFSMGNEVLQNRV 130
Query: 136 VEC-VF---WGNGVVCVTEANRYFCMADFATMKVCELARPEV---------------EEL 176
++ +F +G+GV +T A R+ A+ +K+ + PEV + +
Sbjct: 131 LDARIFHTEFGSGVAILTGAYRFTLSANVGDLKLRRM--PEVPGLQSAPSCWTTLCHDRV 188
Query: 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTH 236
PH + + P + T AG+ GV +MAVS ++A FT
Sbjct: 189 PHILLAVGPDLYLLDHATCSAVTPAGL----APGVSSF-----LQMAVSFTYRYLALFTD 239
Query: 237 DGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM-----DSVLLYWNDMLVMVAPQAEPV 291
G + + + + + +C PP+Q+ WC +V++ W L++V E +
Sbjct: 240 TGYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGNAPESI 299
Query: 292 QYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRR 351
Q+ DE L+PE DGVRI S S+ EFL VP ++E+IF I S +P ALL +A +++
Sbjct: 300 QFVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKE 359
Query: 352 SAKADENLRLIR--ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQ 409
S KADE LR I+ L +AV+ CI+AAGHE Q++LLRAAS+G+ F F D
Sbjct: 360 SQKADEYLREIQELGQLIQAVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFV 419
Query: 410 EMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ-- 467
MC+ LRVLNA RD IGIPL+ QYK LT VL+ RL+ + LA++I EYL + +
Sbjct: 420 HMCQDLRVLNAIRDYHIGIPLTYTQYKQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQ 479
Query: 468 --EVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAML 525
++ HWAC K A + D + + KL G+SY+ +AA A GR +LA L
Sbjct: 480 GVSRILAHWACYKARA-WDMRDEDVARAINQKLGDTPGVSYSDIAARAYGCGRTELAIKL 538
Query: 526 VEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRP 585
+E+EPRS +QVPLLL + AL KA ESGDTDLV+ V+ H+ + +FF ++ +P
Sbjct: 539 LEYEPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVFTVLLHLKNELNRGDFFMTLRNQP 598
Query: 586 LACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIK 645
+A L+ + + + + LKD + QE+ + S+ + + G R+
Sbjct: 599 MALSLYRQFCKHQELDTLKDLYNQDDNHQELGSFHIRASY--------AAEERIEG-RVA 649
Query: 646 RIEKAHSLFSETKEHTFESKAAEEHAKLLSV 676
++ A F + K + F +KA E+ +LL +
Sbjct: 650 ALQTAADAFYKAK-NEFAAKATEDQMRLLRI 679
>sp|Q9UT38|VPS16_SCHPO Probable vacuolar protein sorting-associated protein 16 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps16 PE=3 SV=1
Length = 835
Score = 294 bits (753), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 204/689 (29%), Positives = 346/689 (50%), Gaps = 41/689 (5%)
Query: 9 EWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYA--ESALR 66
EW+L+ + YY+K + + W++ID A AP GG IA+ R +S + Y + +
Sbjct: 11 EWELLQDTYYQKSAIGKAEWEYIDPVDFMFAVAPCGGAIAITRSESNLQSNYKYDQVPMY 70
Query: 67 KLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASM 126
+ +F +G L+ W L+GM W+E++ LI V + G V YN+ E + S+
Sbjct: 71 SICVFCLSGQLLQTLTWDKTS--LVGMGWNENEELIVVSKQGQVRVYNLLGEFHQ--FSL 126
Query: 127 GKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCV------ 180
GK + EC F GV + + + + + F E R +P
Sbjct: 127 GKGVENIGIRECQFSEGGVFALLQNDTFISITGFE-----EPWRKTYASIPFNTLEYYNI 181
Query: 181 ---AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQK---MAVSPNGNFVACF 234
A+I ++ +++++ IL +DE Q + Q +++SPN ++A +
Sbjct: 182 DSWALIPNPFSPDLGMDIVVTVGPHILQIDEQDSQLHSISSLQHVSHISISPNARYLALY 241
Query: 235 THDGRLVVNNTNFSSPVID-----ESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE 289
G++ V +++FS ++D E++L +Q+AWCG D+V+L ++L +V P
Sbjct: 242 ESVGKVRVISSDFSKELLDLRLPETVAEASL--KQMAWCGNDAVVLVHENLLTLVGPFGG 299
Query: 290 PVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFD 349
V Y Y+ ++ E DGVRIL+ S EFL++VPA E IF IGS +P A L +A
Sbjct: 300 SVPYLYNHTPIVSTEVDGVRILTKDSSEFLRKVPAPLENIFHIGSKTPGAKLVEAFQKMK 359
Query: 350 RRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQ 409
+S A++ L ++ L AV+ C+ A+ +EF I Q+ LL AAS G+ +
Sbjct: 360 LKSVFAEKMLLELKDELHDAVDTCVQASLNEFSIEWQKVLLEAASLGKNSLRMYNHQEYV 419
Query: 410 EMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEV 469
++C+ LRVLNAARDP +GI ++ ++Y L LI R + LA++ S ++ + +
Sbjct: 420 DVCRELRVLNAARDPNVGIYITHEEYLHLGLERLIQRFSCRQLYGLAVQASMWMQIPCDW 479
Query: 470 VIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHE 529
V + WA + I S + P+ +L+ ++ +L K ISY +A A + GR L+ L++ E
Sbjct: 480 VYIQWAQTYIKQS-SEPEEVVLDNIVKRLSSRKYISYEKIARTAYQEGRLILSTKLLDFE 538
Query: 530 PRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACD 589
P + QV LLL++ + AL K E+ D +L+ V+ I Q+ FF ++ P A
Sbjct: 539 PLAKHQVMLLLNMEAYEQALKKVIETMDNNLIIYVVLQIKQQMAIASFFQILNEYPDAVK 598
Query: 590 LFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEK 649
++ +A+ + L DFF Q +A L +++ + +A RI ++
Sbjct: 599 VYVEFAKKNDRKTLHDFFYQDDNKQGIAVLAVEDTLK----------TATVNQRITSLKS 648
Query: 650 AHSLFSETKEHTFESKAAEEHAKLLSVIQ 678
A + SE+KE + E K + KLL + Q
Sbjct: 649 AAKVCSESKELSLEEKCLGDEIKLLQLQQ 677
>sp|Q03308|VPS16_YEAST Vacuolar protein sorting-associated protein 16 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS16 PE=1
SV=2
Length = 798
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 119/454 (26%), Positives = 205/454 (45%), Gaps = 41/454 (9%)
Query: 199 TDAGILMLDEDGVQKVD-----------DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNF 247
D I++LD D V +V D+ K+ +S G D +L + F
Sbjct: 161 NDDSIILLDVDHVYQVSTSNGALLKLITDSSWHKVTISSRGFICLYNMKDNKLQI----F 216
Query: 248 SSP---VIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLV-LIP 303
P +++ + +S P+ I WCG D+V + D + + P V ++Y + L
Sbjct: 217 RDPARILMEHNLDST--PDDICWCGNDTVACSFEDEIKLYGPDGLYVTFWYPFTVTNLRA 274
Query: 304 ECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIR 363
E DG+++++ + FL RV T IF IGST P A+L D+ + + KA E L+
Sbjct: 275 EVDGLKVITTEKIYFLSRVQPQTSNIFRIGSTEPGAMLVDSFSLLEDHAPKAIEILK--N 332
Query: 364 ASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFC--SNFQRDRIQEMCKTLRVLNAA 421
L K V CI AA EF+ Q+ LL AASYG+A +F C T+++LN
Sbjct: 333 FVLEKGVLDCIAAAIDEFEPKLQKMLLNAASYGKASLQYKSFDASIFVNACNTIKLLNCF 392
Query: 422 RDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISE------YLGMNQEVVIMHWA 475
R GI L++++Y+ ++ +I RL+ + + ++I + LG V WA
Sbjct: 393 R--SFGIFLTVEEYRCISLKGVIDRLLKYHRYYECIQICKLANERFLLGY----VFTEWA 446
Query: 476 CSKITASLAIPDVTLLEILLDKLK---LCKGISYAAVAAHADKSGRRKLAAMLVEHEPRS 532
KI S + D LL+ + +L + + AVA A GR +L+ L E
Sbjct: 447 KDKIKGSPDMEDDELLDKIKSRLSVIDMTDTLQMVAVAKVAYLEGRFQLSRNLALLEKNE 506
Query: 533 SKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFT 592
++ L ++ ++ AL + + + L ++ + +K + ++ L+
Sbjct: 507 EARIEQLYNLDDDSIALKECIKVQNYSLTISLLIALSKKLTNSQLTKLLIIDMFNNPLYL 566
Query: 593 VYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWE 626
Y R K +L DF+ T + ++A +L ++ E
Sbjct: 567 YYMRMDK-AYLYDFYRQTDRFIDLAHVLLQQGKE 599
>sp|Q60V75|VPS16_CAEBR Vacuolar protein sorting-associated protein 16 homolog
OS=Caenorhabditis briggsae GN=vps-16 PE=3 SV=1
Length = 858
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 139/602 (23%), Positives = 252/602 (41%), Gaps = 70/602 (11%)
Query: 39 ACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSED 98
A F GPIAVI YA + I +G ++ + P + + W+
Sbjct: 58 AACQFSGPIAVI---------YAAPKSWFIWIRTISGRILKRDL---PCTDPVFIDWTRA 105
Query: 99 QTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVV----ECVFW----GNGVVCVTE 150
L+ + ++G A+++ E F +N V EC + G+ + V +
Sbjct: 106 HCLLVLSKNG-------RAQVLSSIGEKVSEVFFDNQVSDVHECRTFATSRGDSGIAVMD 158
Query: 151 ANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210
+ + + + V RP ELP +P +T +L+ +A LM +
Sbjct: 159 VDGQVAVVNSVSEPVIWSMRPPYSELPTAWTAFQPHSQLT---HILLIFEAVFLMGCQGE 215
Query: 211 VQKVDDTLSQKMAVSPNGNFVACFTHDGR----LVVNNTNFSSPVIDES---CESALPPE 263
+V + S + V + +V C D R ++ N ID S C +
Sbjct: 216 SLQVQNHAS--VWVDSSTKYVKCVVDDARSRIAMMTENGKIQIVSIDLSTCFCTVEVTEH 273
Query: 264 QIA------WCGMDSVLLYWNDML---VMVAPQAEP---VQYFYDEPLV---LIPECDGV 308
+I W G V + + L V V+ + +P V++ + + E DG+
Sbjct: 274 EIGKCINFGWVGNSVVFVQMSSSLTVFVNVSARRKPGDEVRFMSIKMTANARISVEPDGI 333
Query: 309 RILSNSSMEFLQRVPASTEQIFAIGST--SPAALLYDALDHFDRRSAKADENLRLIRASL 366
R+ ++ +EF++ AS E+I + + A LY A ++ + + +
Sbjct: 334 RLFESTRVEFVE--AASREKIAVLNRSLNEDGAYLYKAAQEMEQGTGHNSFAASTVIQDM 391
Query: 367 PKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNF-QRDRIQEMCKTLRVLNAARDPE 425
KA++ CI A + Q+ LL+AA +G A+ + ++ K +RVLN R
Sbjct: 392 YKAIDDCISTACDTWQPEEQKLLLKAARFGMAYTNTTPDTTKLMRAIKEIRVLNELRMVR 451
Query: 426 IGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ----EVVIMHW---ACSK 478
GIPL+ +QY+ + + +I RLI+ + +A++++++LG + V++ W + SK
Sbjct: 452 TGIPLTHRQYRIIGDTCIINRLIDMGSYSVAIKVAQWLGGENCESVDRVLLEWVRRSISK 511
Query: 479 ITASLAIPDVTLLEILLDKL--KLCK--GISYAAVAAHADKSGRRKLAAMLVEHEPRSSK 534
++ S D LE L +K+ KL + +S A A A ++ +LA + + E
Sbjct: 512 VSRSNMKMDQPALEALDEKISAKLLQFPHVSMADAARRAIEAKLPELARLFIRRETDDES 571
Query: 535 QVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVY 594
V +LL + + AL KA S L++ V+ H+ + I PLA L+
Sbjct: 572 HVAVLLQLNDVSAALTKAAASQRPQLIHQVVRHLMTSESRSSYELAISRIPLAQCLYQDL 631
Query: 595 AR 596
R
Sbjct: 632 VR 633
>sp|Q11182|VPS16_CAEEL Vacuolar protein sorting-associated protein 16 homolog
OS=Caenorhabditis elegans GN=vps-16 PE=3 SV=2
Length = 852
Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 134/569 (23%), Positives = 247/569 (43%), Gaps = 65/569 (11%)
Query: 73 SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFE 132
S +L + + P + M W+ L+ + + G R +I + L E + + +
Sbjct: 79 SGRILKRDMAFNEP----VFMEWTRAHCLLVLNKAG---RAHIFSSLGEKISEVIFDSQM 131
Query: 133 ENVVECVFW----GNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYT 188
+V EC + G+ + V + + + + + V +P E+P +P
Sbjct: 132 SDVHECRTFATSRGDSGIAVMDVDGQVSVVNSVSEPVIWSMKPPYSEMPTAWTAFQPHSQ 191
Query: 189 MTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMA---VSPNGNFVACFTHDGRLVVNNT 245
+T +L+ +A LM G Q + Q A V N +V C D R +
Sbjct: 192 LT---HILLIFEAVFLM----GCQG-ESLREQSHAASWVDSNTKYVKCVVDDARSRIAMM 243
Query: 246 NFSSPV----IDES---CESALPPEQIA------WCGMDSVLLYWNDMLVM---VAPQAE 289
S + ID S C + IA W G +V + + L++ V+ + +
Sbjct: 244 TESGKIQIVSIDLSTCFCTVEITDHDIAKCINFGWVGNSAVFVQMSPSLIVFVNVSARRK 303
Query: 290 P---VQYFYDEPLV----LIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSP---AA 339
P VQ + E + + E DG+R+ ++ +EF V A++ + A+ + +P A
Sbjct: 304 PGDEVQIY--EKMTANAKISIEPDGIRLFESTQVEF---VEAASREKIAVLNRNPNEDGA 358
Query: 340 LLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAF 399
LY A + + + L KA++ CI A + Q+ LL+AA +G A+
Sbjct: 359 HLYKAAQEMSQGTGHNSFAASTVIQDLYKAIDDCISTACDTWQPEEQKLLLKAARFGMAY 418
Query: 400 CSNF-QRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALR 458
+ ++ K +RVLN R GIPL+ +Q++++ + +I RLI+ + +A++
Sbjct: 419 TNTTPDTTKLMRAIKEIRVLNELRMVRTGIPLTHRQFRAIGETCVINRLIDMGSYSVAIK 478
Query: 459 ISEYLG----MNQEVVIMHW---ACSKITASLAIPDVTLLEILLDKL--KLCK--GISYA 507
++++LG N + V++ W + SK++ S D LE L +K+ KL + +S A
Sbjct: 479 VAQWLGGETSENVDRVLLEWVRRSISKVSKSNMKMDQPALEALDEKISAKLLQFPHVSIA 538
Query: 508 AVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFH 567
A A ++ +LA + + E + V +LL + + AL KA+ S L++ V+ H
Sbjct: 539 DAARRAIEAKLPELARLFIRRETDDANHVAVLLQLNDVSAALQKASASQRPQLIHQVVRH 598
Query: 568 IWQKRPALEFFGMIQTRPLACDLFTVYAR 596
+ + I PLA L+ R
Sbjct: 599 LMNSESRSSYELAISRIPLAQCLYQDLVR 627
>sp|Q9P7N3|VPS41_SCHPO Vacuolar protein sorting-associated protein 41
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps41 PE=3 SV=2
Length = 871
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQK-----MAVSPNGNFV 231
P I+P Y+ S +VL G AG ++L E G DT+ Q +S ++
Sbjct: 122 PLLSVAIDPYYSTRSSRQVLSGGRAGKVVLSEKGWLGNKDTVLQADCGAVYKISWYTTYI 181
Query: 232 ACFTHDGRLVVNNTNFSSPVIDESCESALP-----PEQIAWCGMDSVLLYWNDMLVMVAP 286
A + D + V +T F + LP P Q+ W +++ W+D +++V+
Sbjct: 182 A-WASDLGITVYSTEFGKVLGRLEPPKRLPNDEIFPYQLFWQSESRLVIGWSDQIMIVSI 240
Query: 287 QAEPV 291
Q V
Sbjct: 241 QRSNV 245
>sp|Q9VQ89|MIO_DROME WD repeat-containing protein mio OS=Drosophila melanogaster GN=mio
PE=2 SV=2
Length = 867
Score = 33.1 bits (74), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 212 QKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 271
Q + Q ++VSPNGN++ + + + N SP+ +S+ QIAWC
Sbjct: 188 QSIQTKTVQGLSVSPNGNYLCSYVDSVITLWDPRNIKSPL--RQIQSSKNHLQIAWCPTR 245
Query: 272 SVLL 275
+ LL
Sbjct: 246 TSLL 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 251,318,545
Number of Sequences: 539616
Number of extensions: 10342544
Number of successful extensions: 22513
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22465
Number of HSP's gapped (non-prelim): 10
length of query: 691
length of database: 191,569,459
effective HSP length: 124
effective length of query: 567
effective length of database: 124,657,075
effective search space: 70680561525
effective search space used: 70680561525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)