Query 005559
Match_columns 691
No_of_seqs 199 out of 350
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 01:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2280 Vacuolar assembly/sort 100.0 6E-158 1E-162 1284.6 56.2 671 1-687 1-682 (829)
2 PF04841 Vps16_N: Vps16, N-ter 100.0 2.7E-92 5.9E-97 775.7 41.8 397 6-410 1-410 (410)
3 PF04840 Vps16_C: Vps16, C-ter 100.0 1E-40 2.2E-45 352.9 18.6 172 504-685 1-172 (319)
4 KOG0272 U4/U6 small nuclear ri 99.8 9.8E-20 2.1E-24 189.3 19.0 255 34-313 177-459 (459)
5 KOG0271 Notchless-like WD40 re 99.7 7.9E-17 1.7E-21 165.8 20.4 256 36-312 161-479 (480)
6 KOG0315 G-protein beta subunit 99.7 1.7E-14 3.8E-19 141.6 25.4 254 10-326 25-300 (311)
7 KOG0279 G protein beta subunit 99.7 1.2E-14 2.6E-19 144.9 22.1 235 36-312 67-311 (315)
8 KOG0263 Transcription initiati 99.7 4.7E-15 1E-19 165.2 20.2 179 76-268 442-628 (707)
9 KOG0645 WD40 repeat protein [G 99.6 1.2E-13 2.7E-18 137.2 24.2 250 34-314 16-311 (312)
10 cd00200 WD40 WD40 domain, foun 99.6 6.4E-13 1.4E-17 135.0 29.2 250 35-311 12-288 (289)
11 KOG0291 WD40-repeat-containing 99.6 1.9E-13 4E-18 151.3 25.9 286 4-322 315-620 (893)
12 KOG0272 U4/U6 small nuclear ri 99.6 1.4E-14 3.1E-19 151.1 14.7 177 63-253 238-425 (459)
13 KOG0266 WD40 repeat-containing 99.6 2.4E-13 5.1E-18 152.8 24.5 255 34-338 161-434 (456)
14 KOG0271 Notchless-like WD40 re 99.6 3.7E-14 8E-19 146.3 15.6 273 64-345 86-428 (480)
15 KOG0273 Beta-transducin family 99.6 3.9E-13 8.4E-18 142.2 21.8 211 36-268 239-502 (524)
16 KOG0291 WD40-repeat-containing 99.5 2.7E-12 5.9E-17 142.2 24.6 187 36-245 311-507 (893)
17 cd00200 WD40 WD40 domain, foun 99.5 7.7E-12 1.7E-16 127.0 25.4 208 36-270 55-272 (289)
18 PLN00181 protein SPA1-RELATED; 99.5 8.9E-12 1.9E-16 149.6 29.7 219 64-312 553-791 (793)
19 KOG0306 WD40-repeat-containing 99.5 1.2E-12 2.6E-17 144.9 19.7 242 64-345 392-653 (888)
20 KOG0318 WD40 repeat stress pro 99.5 2.4E-11 5.1E-16 130.3 28.7 277 36-342 194-503 (603)
21 KOG0266 WD40 repeat-containing 99.5 5E-12 1.1E-16 142.1 24.3 201 32-257 203-420 (456)
22 KOG0284 Polyadenylation factor 99.5 6.5E-13 1.4E-17 138.3 14.6 254 35-314 99-380 (464)
23 KOG0279 G protein beta subunit 99.5 1.5E-11 3.2E-16 123.1 23.5 191 64-268 36-242 (315)
24 KOG0265 U5 snRNP-specific prot 99.5 7.8E-12 1.7E-16 126.1 21.4 247 34-306 49-329 (338)
25 KOG0286 G-protein beta subunit 99.5 5.3E-11 1.2E-15 119.7 27.1 252 36-312 59-343 (343)
26 KOG0640 mRNA cleavage stimulat 99.4 6.3E-12 1.4E-16 126.9 19.5 256 37-314 117-426 (430)
27 KOG0273 Beta-transducin family 99.4 1.4E-11 3.1E-16 130.5 22.5 236 88-340 236-507 (524)
28 KOG0293 WD40 repeat-containing 99.4 2.8E-11 6E-16 126.4 21.9 256 34-315 226-514 (519)
29 KOG0318 WD40 repeat stress pro 99.4 1.9E-10 4.1E-15 123.5 28.6 262 35-320 62-432 (603)
30 KOG0319 WD40-repeat-containing 99.4 3.2E-11 6.9E-16 133.8 19.1 276 38-342 288-605 (775)
31 KOG0286 G-protein beta subunit 99.3 1.1E-10 2.4E-15 117.5 20.8 252 79-344 49-333 (343)
32 KOG0315 G-protein beta subunit 99.3 1.3E-10 2.8E-15 114.6 20.6 245 63-345 17-277 (311)
33 KOG0263 Transcription initiati 99.3 6E-11 1.3E-15 132.8 18.9 173 63-251 470-652 (707)
34 KOG0973 Histone transcription 99.3 1.6E-10 3.6E-15 133.3 22.9 233 32-285 69-353 (942)
35 PTZ00421 coronin; Provisional 99.3 6.8E-10 1.5E-14 125.3 27.7 207 35-268 78-312 (493)
36 PTZ00421 coronin; Provisional 99.3 6.9E-10 1.5E-14 125.3 27.6 193 80-319 70-295 (493)
37 KOG0275 Conserved WD40 repeat- 99.3 4.7E-11 1E-15 121.0 15.6 196 37-257 218-433 (508)
38 KOG0319 WD40-repeat-containing 99.3 8E-11 1.7E-15 130.7 18.5 181 64-257 385-588 (775)
39 PLN00181 protein SPA1-RELATED; 99.3 9.4E-10 2E-14 132.3 27.9 183 35-246 486-690 (793)
40 KOG0288 WD40 repeat protein Ti 99.3 4E-11 8.6E-16 125.4 12.5 245 64-346 195-451 (459)
41 KOG1446 Histone H3 (Lys4) meth 99.2 2.5E-09 5.5E-14 109.0 24.0 235 35-320 17-268 (311)
42 PTZ00420 coronin; Provisional 99.2 4E-09 8.7E-14 120.1 27.7 176 63-252 51-255 (568)
43 KOG0278 Serine/threonine kinas 99.2 1.9E-10 4.1E-15 113.5 13.4 173 64-251 120-302 (334)
44 PTZ00420 coronin; Provisional 99.2 4.8E-09 1.1E-13 119.5 26.4 192 34-248 76-295 (568)
45 KOG0301 Phospholipase A2-activ 99.2 2.6E-09 5.6E-14 118.2 22.7 234 64-315 33-289 (745)
46 KOG1407 WD40 repeat protein [F 99.2 5.9E-09 1.3E-13 103.7 22.5 194 63-273 84-286 (313)
47 KOG0295 WD40 repeat-containing 99.2 8.4E-10 1.8E-14 114.1 16.8 236 76-325 99-375 (406)
48 KOG0292 Vesicle coat complex C 99.2 1.5E-09 3.2E-14 122.5 20.0 230 34-315 11-281 (1202)
49 KOG0295 WD40 repeat-containing 99.2 1.2E-09 2.6E-14 112.9 17.8 197 34-251 152-369 (406)
50 KOG0276 Vesicle coat complex C 99.2 3.1E-09 6.8E-14 116.1 21.8 232 63-312 74-327 (794)
51 KOG0285 Pleiotropic regulator 99.2 3.3E-09 7.2E-14 109.3 20.7 181 37-244 156-346 (460)
52 KOG0645 WD40 repeat protein [G 99.2 5.5E-09 1.2E-13 104.5 21.6 189 34-246 63-261 (312)
53 KOG0296 Angio-associated migra 99.2 4.6E-09 1E-13 108.7 21.3 284 34-344 66-386 (399)
54 KOG0281 Beta-TrCP (transducin 99.1 4.2E-10 9.1E-15 115.3 13.5 188 45-252 199-394 (499)
55 KOG0316 Conserved WD40 repeat- 99.1 3.9E-09 8.5E-14 103.6 19.6 194 37-257 22-224 (307)
56 KOG0282 mRNA splicing factor [ 99.1 1.2E-09 2.5E-14 116.6 16.8 205 37-268 263-483 (503)
57 KOG2445 Nuclear pore complex c 99.1 1.6E-08 3.6E-13 102.7 23.8 250 35-318 16-322 (361)
58 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 7.8E-08 1.7E-12 100.3 29.6 243 64-323 9-288 (300)
59 KOG2055 WD40 repeat protein [G 99.1 9.3E-10 2E-14 116.7 14.7 187 35-245 306-511 (514)
60 KOG0277 Peroxisomal targeting 99.1 1.6E-09 3.5E-14 107.3 15.1 230 21-278 52-307 (311)
61 KOG0313 Microtubule binding pr 99.1 8.8E-09 1.9E-13 107.1 21.2 240 63-314 122-418 (423)
62 KOG0299 U3 snoRNP-associated p 99.1 3.3E-09 7.1E-14 112.6 18.4 184 34-245 204-409 (479)
63 KOG0643 Translation initiation 99.1 3.1E-08 6.7E-13 99.0 22.8 254 37-318 15-321 (327)
64 KOG0316 Conserved WD40 repeat- 99.1 4.8E-09 1E-13 103.0 16.8 209 77-330 9-229 (307)
65 KOG0647 mRNA export protein (c 99.1 1.2E-08 2.5E-13 103.5 19.8 207 34-257 29-292 (347)
66 KOG0274 Cdc4 and related F-box 99.1 2.6E-08 5.6E-13 113.1 24.7 240 64-322 226-490 (537)
67 KOG0293 WD40 repeat-containing 99.1 8.2E-09 1.8E-13 108.2 18.8 243 88-346 225-503 (519)
68 KOG0310 Conserved WD40 repeat- 99.1 9.4E-09 2E-13 109.9 19.1 184 32-243 110-306 (487)
69 KOG2096 WD40 repeat protein [G 99.0 8.6E-08 1.9E-12 97.8 24.8 256 9-285 65-358 (420)
70 KOG1274 WD40 repeat protein [G 99.0 1.2E-08 2.5E-13 116.2 20.2 192 33-246 55-262 (933)
71 KOG1446 Histone H3 (Lys4) meth 99.0 3.6E-08 7.9E-13 100.7 21.7 176 64-252 78-268 (311)
72 KOG0310 Conserved WD40 repeat- 99.0 2E-08 4.4E-13 107.4 20.3 220 35-285 71-306 (487)
73 KOG0276 Vesicle coat complex C 99.0 3.5E-08 7.5E-13 108.2 22.2 250 63-334 160-472 (794)
74 KOG0294 WD40 repeat-containing 99.0 2.1E-08 4.6E-13 102.2 18.8 185 63-258 60-298 (362)
75 KOG0306 WD40-repeat-containing 99.0 9.7E-09 2.1E-13 114.5 17.7 194 36-252 458-670 (888)
76 KOG0772 Uncharacterized conser 99.0 1E-08 2.2E-13 110.1 16.6 228 35-296 217-486 (641)
77 KOG0973 Histone transcription 99.0 2E-08 4.3E-13 116.4 20.0 288 26-337 6-381 (942)
78 KOG0282 mRNA splicing factor [ 99.0 1E-08 2.2E-13 109.6 16.0 236 77-327 206-475 (503)
79 KOG0289 mRNA splicing factor [ 99.0 4.8E-08 1E-12 103.2 20.7 171 64-245 239-418 (506)
80 KOG0305 Anaphase promoting com 99.0 5.7E-08 1.2E-12 107.2 22.4 250 32-313 177-460 (484)
81 KOG0275 Conserved WD40 repeat- 99.0 3.3E-09 7.1E-14 107.9 11.6 172 63-244 325-507 (508)
82 KOG0288 WD40 repeat protein Ti 99.0 1.1E-08 2.3E-13 107.5 15.4 188 63-270 238-442 (459)
83 KOG1539 WD repeat protein [Gen 99.0 1.4E-08 3.1E-13 114.4 17.0 217 8-250 409-654 (910)
84 KOG0301 Phospholipase A2-activ 99.0 2.5E-08 5.5E-13 110.5 18.7 226 10-277 40-285 (745)
85 KOG0284 Polyadenylation factor 99.0 8.4E-09 1.8E-13 108.1 13.7 169 64-246 200-380 (464)
86 KOG2055 WD40 repeat protein [G 99.0 4.6E-08 9.9E-13 104.1 19.2 159 87-254 213-382 (514)
87 KOG1538 Uncharacterized conser 98.9 3.4E-08 7.3E-13 108.6 18.2 243 34-307 14-285 (1081)
88 KOG0278 Serine/threonine kinas 98.9 2.8E-08 6.1E-13 98.3 15.8 225 74-314 48-297 (334)
89 KOG0265 U5 snRNP-specific prot 98.9 7.2E-08 1.6E-12 97.8 18.7 253 77-342 39-324 (338)
90 KOG0268 Sof1-like rRNA process 98.9 2.6E-08 5.6E-13 103.1 15.8 259 45-320 68-351 (433)
91 KOG0771 Prolactin regulatory e 98.9 1.6E-08 3.5E-13 106.7 14.6 188 36-246 148-354 (398)
92 KOG0641 WD40 repeat protein [G 98.9 7.1E-07 1.5E-11 87.2 24.1 208 34-258 34-273 (350)
93 KOG0292 Vesicle coat complex C 98.9 2.7E-07 5.9E-12 104.7 24.2 200 32-254 51-288 (1202)
94 TIGR03866 PQQ_ABC_repeats PQQ- 98.9 3E-07 6.6E-12 95.8 23.4 208 35-266 75-297 (300)
95 KOG1332 Vesicle coat complex C 98.9 7.7E-08 1.7E-12 95.1 17.1 183 42-246 21-241 (299)
96 KOG1273 WD40 repeat protein [G 98.9 3.4E-07 7.5E-12 93.4 21.6 254 35-316 26-324 (405)
97 KOG0289 mRNA splicing factor [ 98.9 2.4E-07 5.3E-12 97.9 21.2 199 63-276 280-492 (506)
98 KOG2048 WD40 repeat protein [G 98.9 1.1E-06 2.4E-11 97.6 26.9 197 36-257 29-244 (691)
99 KOG0269 WD40 repeat-containing 98.9 1.9E-08 4.1E-13 112.6 13.1 196 64-274 108-324 (839)
100 KOG0283 WD40 repeat-containing 98.9 8.3E-08 1.8E-12 108.8 18.1 169 16-211 249-483 (712)
101 KOG1538 Uncharacterized conser 98.9 1.1E-07 2.4E-12 104.6 18.3 229 89-332 14-269 (1081)
102 KOG0772 Uncharacterized conser 98.8 1.3E-07 2.9E-12 101.7 18.0 189 63-255 186-404 (641)
103 KOG1274 WD40 repeat protein [G 98.8 5.6E-07 1.2E-11 102.9 23.9 219 88-322 14-273 (933)
104 KOG2096 WD40 repeat protein [G 98.8 1.5E-07 3.3E-12 96.1 17.4 183 37-244 192-400 (420)
105 KOG0268 Sof1-like rRNA process 98.8 1.9E-08 4E-13 104.2 11.1 171 65-251 166-350 (433)
106 KOG0296 Angio-associated migra 98.8 1.2E-06 2.7E-11 91.0 23.7 254 34-312 108-396 (399)
107 PRK01742 tolB translocation pr 98.8 4.1E-07 8.9E-12 101.7 22.1 204 35-268 206-424 (429)
108 KOG0283 WD40 repeat-containing 98.8 2.5E-07 5.5E-12 105.0 19.9 220 83-315 265-577 (712)
109 KOG0285 Pleiotropic regulator 98.8 1E-07 2.3E-12 98.5 14.3 160 81-254 147-315 (460)
110 PRK03629 tolB translocation pr 98.8 7.6E-07 1.7E-11 99.6 22.0 206 36-268 202-426 (429)
111 PRK05137 tolB translocation pr 98.8 6.6E-07 1.4E-11 100.3 21.6 187 36-246 205-412 (435)
112 KOG0646 WD40 repeat protein [G 98.8 3.6E-07 7.9E-12 97.5 18.0 241 62-323 57-316 (476)
113 PRK02889 tolB translocation pr 98.7 7.9E-07 1.7E-11 99.4 21.2 187 36-246 199-403 (427)
114 KOG1332 Vesicle coat complex C 98.7 3.3E-07 7.1E-12 90.8 15.7 191 35-248 59-288 (299)
115 PRK01742 tolB translocation pr 98.7 1.2E-06 2.6E-11 98.0 22.5 177 43-244 167-359 (429)
116 KOG0270 WD40 repeat-containing 98.7 4.1E-07 8.8E-12 96.6 16.7 176 44-248 192-406 (463)
117 KOG0307 Vesicle coat complex C 98.7 2.8E-05 6.1E-10 91.3 33.1 209 64-283 88-323 (1049)
118 PRK04922 tolB translocation pr 98.7 8.5E-07 1.8E-11 99.3 20.4 187 36-246 207-411 (433)
119 KOG1036 Mitotic spindle checkp 98.7 4.8E-06 1E-10 85.1 23.6 215 36-279 17-261 (323)
120 PRK05137 tolB translocation pr 98.7 2.9E-06 6.3E-11 95.1 24.2 185 42-246 163-366 (435)
121 KOG0646 WD40 repeat protein [G 98.7 5.1E-07 1.1E-11 96.4 16.6 193 36-255 85-316 (476)
122 KOG0281 Beta-TrCP (transducin 98.7 2.1E-07 4.5E-12 95.9 13.0 183 40-245 234-427 (499)
123 KOG2106 Uncharacterized conser 98.7 8.8E-06 1.9E-10 87.8 25.5 236 10-269 227-501 (626)
124 KOG0643 Translation initiation 98.7 8.9E-07 1.9E-11 88.7 16.2 189 34-244 95-315 (327)
125 PRK03629 tolB translocation pr 98.6 1.1E-05 2.4E-10 90.2 26.3 163 65-244 178-361 (429)
126 KOG0277 Peroxisomal targeting 98.6 5.7E-07 1.2E-11 89.5 13.7 171 63-246 124-309 (311)
127 PRK04922 tolB translocation pr 98.6 6.7E-06 1.5E-10 92.1 23.8 166 65-246 183-368 (433)
128 KOG1407 WD40 repeat protein [F 98.6 3.2E-06 7E-11 84.6 18.6 243 35-332 23-278 (313)
129 KOG0264 Nucleosome remodeling 98.6 1.7E-06 3.7E-11 92.3 17.2 173 63-245 144-346 (422)
130 KOG2111 Uncharacterized conser 98.6 1.9E-05 4.1E-10 81.2 23.6 159 64-245 73-255 (346)
131 KOG0264 Nucleosome remodeling 98.6 2.4E-06 5.2E-11 91.1 17.6 169 64-245 198-403 (422)
132 TIGR02800 propeller_TolB tol-p 98.5 5.8E-06 1.3E-10 91.7 21.2 187 36-246 193-397 (417)
133 KOG1036 Mitotic spindle checkp 98.5 4.7E-06 1E-10 85.2 18.2 193 63-270 72-285 (323)
134 KOG1539 WD repeat protein [Gen 98.5 8.1E-06 1.8E-10 92.7 21.1 213 64-315 420-649 (910)
135 PRK02889 tolB translocation pr 98.5 1.2E-05 2.6E-10 89.9 22.8 166 65-246 175-360 (427)
136 PRK04792 tolB translocation pr 98.5 8.2E-06 1.8E-10 91.8 21.5 206 37-268 222-445 (448)
137 KOG1063 RNA polymerase II elon 98.5 1.9E-06 4E-11 96.0 15.7 202 32-246 525-763 (764)
138 KOG0313 Microtubule binding pr 98.5 4.7E-06 1E-10 87.2 17.7 186 35-246 196-418 (423)
139 KOG0305 Anaphase promoting com 98.5 8.4E-06 1.8E-10 90.3 20.7 225 34-294 219-458 (484)
140 KOG0308 Conserved WD40 repeat- 98.5 1.6E-06 3.5E-11 95.9 14.0 185 64-257 45-254 (735)
141 KOG0274 Cdc4 and related F-box 98.5 6.9E-06 1.5E-10 93.5 19.7 228 88-332 209-460 (537)
142 KOG1524 WD40 repeat-containing 98.5 2.3E-06 5E-11 92.6 14.5 158 63-235 82-245 (737)
143 PF08662 eIF2A: Eukaryotic tra 98.5 9.9E-06 2.2E-10 80.6 18.1 153 89-255 7-187 (194)
144 KOG0300 WD40 repeat-containing 98.5 7.2E-06 1.6E-10 83.8 16.8 194 63-268 167-407 (481)
145 PRK00178 tolB translocation pr 98.5 1.9E-05 4.1E-10 88.3 22.2 187 36-246 202-406 (430)
146 KOG0640 mRNA cleavage stimulat 98.4 6.8E-06 1.5E-10 83.9 16.3 190 36-244 220-424 (430)
147 PRK04043 tolB translocation pr 98.4 3.2E-05 6.9E-10 86.1 23.5 184 37-246 192-400 (419)
148 PF04053 Coatomer_WDAD: Coatom 98.4 0.00011 2.4E-09 82.0 27.1 156 89-270 34-207 (443)
149 KOG1523 Actin-related protein 98.4 2.2E-05 4.7E-10 80.8 19.3 221 35-275 13-265 (361)
150 KOG2110 Uncharacterized conser 98.4 5.5E-05 1.2E-09 79.2 22.5 212 65-317 25-251 (391)
151 KOG1445 Tumor-specific antigen 98.4 8.6E-06 1.9E-10 89.7 16.9 144 88-275 628-781 (1012)
152 PRK11028 6-phosphogluconolacto 98.4 0.00023 4.9E-09 76.6 28.2 187 36-246 38-258 (330)
153 KOG2048 WD40 repeat protein [G 98.4 2.3E-05 4.9E-10 87.4 20.1 199 78-295 18-231 (691)
154 KOG4328 WD40 protein [Function 98.4 1.9E-05 4.2E-10 84.4 18.8 228 34-273 177-434 (498)
155 TIGR02800 propeller_TolB tol-p 98.4 5.6E-05 1.2E-09 83.8 23.3 167 64-246 168-354 (417)
156 KOG2110 Uncharacterized conser 98.4 4.9E-05 1.1E-09 79.6 20.8 176 46-246 58-248 (391)
157 KOG0267 Microtubule severing p 98.4 2.5E-06 5.4E-11 95.4 12.0 191 64-309 48-262 (825)
158 KOG0642 Cell-cycle nuclear pro 98.4 5.8E-06 1.2E-10 90.4 14.4 212 28-257 340-572 (577)
159 PF08662 eIF2A: Eukaryotic tra 98.3 2.3E-05 4.9E-10 78.1 17.4 160 35-212 8-182 (194)
160 COG2319 FOG: WD40 repeat [Gene 98.3 0.00025 5.4E-09 75.3 26.7 181 41-246 119-314 (466)
161 KOG1240 Protein kinase contain 98.3 2.1E-05 4.6E-10 92.6 19.2 190 71-268 1034-1247(1431)
162 KOG1272 WD40-repeat-containing 98.3 3.4E-06 7.4E-11 90.2 11.5 219 32-282 129-357 (545)
163 KOG0639 Transducin-like enhanc 98.3 1.2E-05 2.6E-10 86.6 15.0 228 89-324 421-673 (705)
164 KOG0300 WD40 repeat-containing 98.3 3.1E-05 6.6E-10 79.3 16.6 155 77-246 264-428 (481)
165 PRK01029 tolB translocation pr 98.3 9.1E-05 2E-09 82.8 22.3 187 37-246 189-403 (428)
166 KOG0303 Actin-binding protein 98.3 1.8E-05 3.9E-10 83.3 14.9 37 80-118 76-114 (472)
167 KOG0771 Prolactin regulatory e 98.2 1E-05 2.3E-10 85.8 12.6 144 91-245 148-310 (398)
168 KOG2106 Uncharacterized conser 98.2 0.00075 1.6E-08 73.3 26.5 167 64-244 220-396 (626)
169 KOG4497 Uncharacterized conser 98.2 3.5E-06 7.7E-11 86.6 8.6 213 37-314 13-240 (447)
170 PF15492 Nbas_N: Neuroblastoma 98.2 0.00014 3E-09 74.4 19.7 180 36-245 47-258 (282)
171 PRK11028 6-phosphogluconolacto 98.2 0.00014 3.1E-09 78.1 21.2 191 36-246 83-304 (330)
172 PRK04792 tolB translocation pr 98.2 0.00032 7E-09 79.0 24.8 156 65-237 197-370 (448)
173 KOG4378 Nuclear protein COP1 [ 98.2 4.6E-05 1E-09 82.2 16.7 196 64-271 99-305 (673)
174 PRK00178 tolB translocation pr 98.2 0.00024 5.3E-09 79.4 23.6 163 66-244 179-361 (430)
175 KOG1034 Transcriptional repres 98.2 3.1E-05 6.7E-10 79.9 14.5 94 64-161 113-211 (385)
176 KOG0647 mRNA export protein (c 98.2 0.00015 3.2E-09 74.3 18.4 187 34-236 74-313 (347)
177 KOG0641 WD40 repeat protein [G 98.1 0.00074 1.6E-08 66.5 22.0 188 34-244 91-301 (350)
178 KOG1524 WD40 repeat-containing 98.1 3.2E-05 7E-10 84.0 13.8 140 440-595 576-727 (737)
179 KOG2139 WD40 repeat protein [G 98.1 0.00027 5.8E-09 74.0 19.7 187 27-235 95-299 (445)
180 KOG2919 Guanine nucleotide-bin 98.1 8.1E-05 1.8E-09 76.7 15.7 263 89-356 51-370 (406)
181 KOG2445 Nuclear pore complex c 98.1 0.00026 5.5E-09 72.7 19.2 203 32-250 59-322 (361)
182 KOG2114 Vacuolar assembly/sort 98.1 0.046 1E-06 63.5 38.4 346 9-480 5-380 (933)
183 KOG0269 WD40 repeat-containing 98.1 6.2E-05 1.3E-09 85.1 15.2 179 90-278 90-294 (839)
184 KOG0650 WD40 repeat nucleolar 98.1 0.0011 2.4E-08 73.4 23.9 251 36-312 404-733 (733)
185 KOG0290 Conserved WD40 repeat- 98.0 0.00034 7.4E-09 71.3 18.3 269 22-320 46-363 (364)
186 KOG1445 Tumor-specific antigen 98.0 3.3E-05 7.1E-10 85.3 11.6 177 22-209 629-844 (1012)
187 KOG1188 WD40 repeat protein [G 98.0 0.00021 4.7E-09 74.2 16.5 172 64-245 48-241 (376)
188 KOG0299 U3 snoRNP-associated p 98.0 0.00069 1.5E-08 72.9 20.6 235 78-323 135-423 (479)
189 KOG1408 WD40 repeat protein [F 98.0 0.0002 4.4E-09 80.2 17.2 186 36-244 463-669 (1080)
190 KOG1963 WD40 repeat protein [G 98.0 0.0006 1.3E-08 78.5 21.3 239 64-322 35-330 (792)
191 KOG0308 Conserved WD40 repeat- 98.0 0.00016 3.6E-09 80.4 16.0 168 64-243 93-282 (735)
192 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.0053 1.2E-07 66.4 27.3 248 39-323 52-339 (352)
193 KOG0307 Vesicle coat complex C 98.0 4.7E-05 1E-09 89.5 12.3 263 36-340 10-312 (1049)
194 KOG0321 WD40 repeat-containing 98.0 0.0003 6.5E-09 78.2 17.4 213 63-278 119-389 (720)
195 KOG0302 Ribosome Assembly prot 98.0 0.00054 1.2E-08 72.1 18.3 127 186-313 264-437 (440)
196 KOG4378 Nuclear protein COP1 [ 98.0 0.00016 3.4E-09 78.2 14.7 171 63-246 54-239 (673)
197 KOG0294 WD40 repeat-containing 98.0 0.00067 1.5E-08 69.9 18.6 219 77-314 35-281 (362)
198 KOG0270 WD40 repeat-containing 97.9 0.00024 5.2E-09 76.0 15.7 168 63-245 263-448 (463)
199 COG2319 FOG: WD40 repeat [Gene 97.9 0.0031 6.7E-08 66.8 24.6 188 35-248 68-273 (466)
200 KOG0639 Transducin-like enhanc 97.9 0.00014 2.9E-09 78.7 13.5 218 38-288 471-695 (705)
201 KOG2394 WD40 protein DMR-N9 [G 97.9 0.0005 1.1E-08 75.2 17.9 184 65-252 143-368 (636)
202 PRK04043 tolB translocation pr 97.9 0.0028 6.2E-08 70.6 24.4 155 65-237 168-339 (419)
203 KOG1063 RNA polymerase II elon 97.9 0.00045 9.7E-09 77.6 16.7 234 64-315 32-298 (764)
204 KOG0302 Ribosome Assembly prot 97.8 0.00092 2E-08 70.4 17.4 160 76-246 202-378 (440)
205 KOG2919 Guanine nucleotide-bin 97.8 0.00076 1.6E-08 69.7 16.3 206 64-279 177-403 (406)
206 PRK01029 tolB translocation pr 97.8 0.0018 3.9E-08 72.5 21.0 171 65-248 164-361 (428)
207 KOG1963 WD40 repeat protein [G 97.8 0.0045 9.9E-08 71.5 24.2 257 35-316 208-540 (792)
208 KOG0267 Microtubule severing p 97.8 5.6E-05 1.2E-09 84.9 8.6 163 62-237 88-259 (825)
209 KOG1009 Chromatin assembly com 97.8 0.00088 1.9E-08 71.1 16.1 194 34-246 67-372 (434)
210 KOG1009 Chromatin assembly com 97.7 0.00039 8.4E-09 73.7 12.9 161 78-245 5-194 (434)
211 PF04762 IKI3: IKI3 family; I 97.7 0.0055 1.2E-07 74.7 24.6 232 37-279 214-506 (928)
212 KOG2321 WD40 repeat protein [G 97.7 0.0052 1.1E-07 68.0 21.8 209 35-270 54-282 (703)
213 KOG0649 WD40 repeat protein [G 97.7 0.0041 8.8E-08 62.2 19.0 168 90-268 13-211 (325)
214 KOG2139 WD40 repeat protein [G 97.7 0.0022 4.7E-08 67.4 17.7 186 37-271 200-396 (445)
215 PF04762 IKI3: IKI3 family; I 97.7 0.013 2.8E-07 71.5 27.3 149 88-246 121-333 (928)
216 KOG2315 Predicted translation 97.7 0.0059 1.3E-07 67.5 21.5 187 63-268 191-409 (566)
217 KOG1240 Protein kinase contain 97.7 0.0064 1.4E-07 72.6 22.9 248 36-315 1053-1335(1431)
218 PF10282 Lactonase: Lactonase, 97.6 0.013 2.9E-07 63.6 24.0 192 36-247 90-323 (345)
219 PF04840 Vps16_C: Vps16, C-ter 97.6 0.002 4.3E-08 69.0 16.9 194 364-570 108-303 (319)
220 KOG2111 Uncharacterized conser 97.6 0.003 6.5E-08 65.4 16.9 112 42-159 136-257 (346)
221 KOG1517 Guanine nucleotide bin 97.6 0.0026 5.5E-08 74.7 18.0 194 35-246 1067-1287(1387)
222 KOG4283 Transcription-coupled 97.6 0.0013 2.8E-08 67.3 13.8 175 64-245 166-364 (397)
223 KOG1587 Cytoplasmic dynein int 97.6 0.019 4.1E-07 65.7 24.5 241 67-314 223-516 (555)
224 KOG4283 Transcription-coupled 97.5 0.0097 2.1E-07 61.1 19.1 234 88-328 44-337 (397)
225 PF00400 WD40: WD domain, G-be 97.5 0.00024 5.3E-09 50.7 5.4 38 75-114 1-39 (39)
226 KOG4328 WD40 protein [Function 97.4 0.0064 1.4E-07 65.6 17.1 213 77-324 178-413 (498)
227 COG4946 Uncharacterized protei 97.4 0.034 7.4E-07 60.5 22.0 183 38-246 272-477 (668)
228 KOG4497 Uncharacterized conser 97.4 0.001 2.3E-08 68.8 9.8 160 64-244 69-238 (447)
229 PLN02919 haloacid dehalogenase 97.3 0.13 2.8E-06 64.0 29.4 194 37-246 572-833 (1057)
230 KOG1273 WD40 repeat protein [G 97.3 0.0092 2E-07 61.8 16.0 165 89-267 25-204 (405)
231 KOG0321 WD40 repeat-containing 97.3 0.014 3.1E-07 65.3 18.1 243 64-313 72-390 (720)
232 KOG1272 WD40-repeat-containing 97.3 0.00084 1.8E-08 72.3 8.3 163 64-244 189-360 (545)
233 PLN02919 haloacid dehalogenase 97.2 0.09 1.9E-06 65.4 26.1 198 36-249 627-891 (1057)
234 COG2706 3-carboxymuconate cycl 97.2 0.081 1.8E-06 56.0 21.7 192 36-246 92-321 (346)
235 KOG0644 Uncharacterized conser 97.2 0.0022 4.7E-08 73.6 10.7 175 63-254 251-434 (1113)
236 KOG1034 Transcriptional repres 97.2 0.0067 1.5E-07 63.1 13.4 139 64-211 62-213 (385)
237 KOG0303 Actin-binding protein 97.2 0.0064 1.4E-07 64.6 13.4 135 63-209 151-294 (472)
238 KOG2041 WD40 repeat protein [G 97.1 0.021 4.6E-07 64.6 17.8 242 41-307 124-443 (1189)
239 KOG0642 Cell-cycle nuclear pro 97.1 0.0028 6.2E-08 69.9 10.8 118 88-212 295-429 (577)
240 PF02239 Cytochrom_D1: Cytochr 97.1 0.039 8.5E-07 60.5 19.1 238 36-323 81-356 (369)
241 PF08450 SGL: SMP-30/Gluconola 97.0 0.17 3.7E-06 51.9 22.6 190 64-271 20-236 (246)
242 KOG0649 WD40 repeat protein [G 97.0 0.033 7.2E-07 55.9 16.0 165 64-243 134-313 (325)
243 COG4946 Uncharacterized protei 97.0 0.058 1.3E-06 58.7 18.6 162 97-268 276-452 (668)
244 PF02239 Cytochrom_D1: Cytochr 96.9 0.45 9.8E-06 52.2 26.0 249 64-324 14-312 (369)
245 PF10282 Lactonase: Lactonase, 96.9 0.37 7.9E-06 52.3 25.1 194 37-246 41-275 (345)
246 KOG2321 WD40 repeat protein [G 96.9 0.028 6E-07 62.5 15.6 189 49-252 102-308 (703)
247 KOG1408 WD40 repeat protein [F 96.9 0.012 2.6E-07 66.6 13.0 176 63-248 523-715 (1080)
248 KOG1354 Serine/threonine prote 96.9 0.045 9.9E-07 57.4 16.3 193 88-285 85-357 (433)
249 COG2706 3-carboxymuconate cycl 96.9 0.34 7.4E-06 51.4 22.9 197 64-268 62-299 (346)
250 KOG0974 WD-repeat protein WDR6 96.8 0.0097 2.1E-07 70.0 12.1 133 64-211 153-290 (967)
251 KOG1007 WD repeat protein TSSC 96.8 0.064 1.4E-06 55.1 16.3 178 65-246 39-245 (370)
252 TIGR02658 TTQ_MADH_Hv methylam 96.7 0.48 1E-05 51.5 23.9 200 37-254 109-338 (352)
253 KOG2394 WD40 protein DMR-N9 [G 96.7 0.0027 5.8E-08 69.7 6.5 90 34-141 292-383 (636)
254 KOG1188 WD40 repeat protein [G 96.7 0.05 1.1E-06 57.1 15.3 159 101-271 43-223 (376)
255 KOG1523 Actin-related protein 96.7 0.21 4.6E-06 52.1 19.6 151 82-244 5-174 (361)
256 KOG2041 WD40 repeat protein [G 96.7 1.8 4E-05 49.8 36.2 74 38-116 264-337 (1189)
257 KOG0322 G-protein beta subunit 96.7 0.06 1.3E-06 54.7 15.0 254 80-345 9-312 (323)
258 KOG0290 Conserved WD40 repeat- 96.7 0.054 1.2E-06 55.7 14.9 206 64-281 119-359 (364)
259 KOG0322 G-protein beta subunit 96.6 0.0023 5.1E-08 64.6 4.9 68 34-115 253-322 (323)
260 KOG1007 WD repeat protein TSSC 96.6 0.052 1.1E-06 55.8 14.4 149 88-243 124-286 (370)
261 KOG1587 Cytoplasmic dynein int 96.6 0.11 2.4E-06 59.5 18.8 180 63-245 262-471 (555)
262 PF00400 WD40: WD domain, G-be 96.6 0.0046 9.9E-08 44.0 4.8 32 213-244 8-39 (39)
263 TIGR03300 assembly_YfgL outer 96.5 1.4 2.9E-05 48.3 26.5 246 64-324 73-348 (377)
264 KOG2315 Predicted translation 96.5 0.04 8.7E-07 61.1 13.8 131 65-212 250-393 (566)
265 COG5354 Uncharacterized protei 96.4 0.35 7.6E-06 53.4 20.1 254 32-314 32-348 (561)
266 KOG4227 WD40 repeat protein [G 96.4 0.35 7.7E-06 51.6 19.4 211 36-274 60-308 (609)
267 COG5354 Uncharacterized protei 96.3 1.2 2.6E-05 49.4 23.0 192 34-235 73-293 (561)
268 KOG1920 IkappaB kinase complex 96.3 0.95 2.1E-05 54.9 24.1 98 142-246 205-322 (1265)
269 PF04053 Coatomer_WDAD: Coatom 96.2 1.6 3.5E-05 49.0 24.8 141 32-210 32-174 (443)
270 PF11768 DUF3312: Protein of u 96.2 1.2 2.6E-05 50.4 23.2 65 186-250 266-333 (545)
271 KOG2066 Vacuolar assembly/sort 96.2 0.13 2.7E-06 59.6 15.5 179 89-286 41-232 (846)
272 KOG0650 WD40 repeat nucleolar 96.1 0.042 9.2E-07 61.3 11.4 165 65-244 496-678 (733)
273 KOG4190 Uncharacterized conser 96.1 0.0068 1.5E-07 66.5 5.2 173 70-252 720-912 (1034)
274 KOG3914 WD repeat protein WDR4 96.1 0.24 5.2E-06 53.1 16.6 41 214-255 192-232 (390)
275 PF13360 PQQ_2: PQQ-like domai 96.1 0.51 1.1E-05 47.5 18.5 173 64-246 44-230 (238)
276 KOG0974 WD-repeat protein WDR6 96.0 0.23 5E-06 58.9 17.3 157 88-257 88-256 (967)
277 KOG1517 Guanine nucleotide bin 96.0 0.14 3E-06 60.8 15.3 172 65-246 1186-1381(1387)
278 KOG1310 WD40 repeat protein [G 95.9 0.022 4.7E-07 62.9 8.0 151 78-234 43-204 (758)
279 KOG2114 Vacuolar assembly/sort 95.8 0.66 1.4E-05 54.3 19.5 134 65-212 90-246 (933)
280 KOG3881 Uncharacterized conser 95.8 0.66 1.4E-05 49.7 17.8 153 88-247 149-321 (412)
281 PF08450 SGL: SMP-30/Gluconola 95.7 1.6 3.5E-05 44.6 20.6 184 92-289 4-215 (246)
282 PF07433 DUF1513: Protein of u 95.6 3.4 7.4E-05 43.8 22.5 197 35-254 7-255 (305)
283 KOG4227 WD40 repeat protein [G 95.6 0.53 1.1E-05 50.3 16.1 157 82-245 53-224 (609)
284 COG0823 TolB Periplasmic compo 95.5 0.21 4.5E-06 55.8 13.9 159 64-239 171-349 (425)
285 TIGR03300 assembly_YfgL outer 95.4 4.3 9.4E-05 44.3 23.7 182 64-254 113-305 (377)
286 PF06977 SdiA-regulated: SdiA- 95.0 4.5 9.8E-05 41.8 21.0 161 35-212 24-204 (248)
287 KOG4532 WD40-like repeat conta 94.9 1.1 2.4E-05 46.0 15.2 104 33-152 159-273 (344)
288 smart00320 WD40 WD40 repeats. 94.8 0.083 1.8E-06 35.1 5.3 38 75-114 2-40 (40)
289 PF13360 PQQ_2: PQQ-like domai 94.8 5 0.00011 40.2 25.2 135 65-212 2-144 (238)
290 KOG4640 Anaphase-promoting com 94.6 0.14 3.1E-06 57.8 9.2 102 36-157 24-129 (665)
291 COG0823 TolB Periplasmic compo 94.6 0.54 1.2E-05 52.6 13.7 174 37-238 197-391 (425)
292 KOG4532 WD40-like repeat conta 94.4 2.7 5.9E-05 43.2 16.8 134 100-244 130-280 (344)
293 PF09787 Golgin_A5: Golgin sub 94.3 0.21 4.6E-06 57.2 9.9 122 547-678 165-297 (511)
294 KOG3881 Uncharacterized conser 94.2 2.9 6.4E-05 45.0 17.2 222 64-322 77-328 (412)
295 PF15492 Nbas_N: Neuroblastoma 94.2 7.3 0.00016 40.5 19.6 73 36-121 1-78 (282)
296 PRK13616 lipoprotein LpqB; Pro 94.1 2.2 4.9E-05 49.7 17.9 107 182-289 399-529 (591)
297 PF12894 Apc4_WD40: Anaphase-p 94.0 0.15 3.2E-06 38.4 5.3 34 216-249 11-44 (47)
298 KOG2079 Vacuolar assembly/sort 93.9 1.1 2.4E-05 53.8 14.8 111 32-157 87-202 (1206)
299 PF14783 BBS2_Mid: Ciliary BBS 93.8 1.4 3E-05 39.5 12.0 95 178-279 3-105 (111)
300 KOG1920 IkappaB kinase complex 93.5 0.25 5.4E-06 59.7 8.8 144 183-328 72-242 (1265)
301 KOG0280 Uncharacterized conser 92.7 2.9 6.3E-05 43.5 13.8 158 64-229 93-266 (339)
302 PRK11138 outer membrane biogen 92.5 20 0.00043 39.5 26.2 98 64-169 77-187 (394)
303 KOG1912 WD40 repeat protein [G 92.4 7.9 0.00017 45.3 18.1 212 63-280 444-734 (1062)
304 PF08553 VID27: VID27 cytoplas 92.4 1.1 2.5E-05 53.3 12.1 112 36-161 580-724 (794)
305 PF10168 Nup88: Nuclear pore c 92.1 4.1 8.9E-05 48.6 16.4 78 29-116 81-179 (717)
306 KOG4547 WD40 repeat-containing 92.1 13 0.00028 42.1 19.0 113 64-184 78-194 (541)
307 KOG3621 WD40 repeat-containing 91.9 4.4 9.5E-05 46.8 15.4 95 7-117 53-155 (726)
308 KOG2066 Vacuolar assembly/sort 91.9 1.9 4.2E-05 50.3 12.7 129 190-326 48-199 (846)
309 PF10647 Gmad1: Lipoprotein Lp 91.8 13 0.00029 38.4 18.2 134 134-277 25-183 (253)
310 PF12894 Apc4_WD40: Anaphase-p 91.7 0.42 9.1E-06 36.0 4.9 32 88-119 12-44 (47)
311 PF14727 PHTB1_N: PTHB1 N-term 91.6 23 0.0005 39.5 20.5 204 16-243 115-357 (418)
312 KOG0882 Cyclophilin-related pe 91.4 0.92 2E-05 49.5 9.0 129 187-319 152-310 (558)
313 KOG1275 PAB-dependent poly(A) 91.2 3.9 8.5E-05 48.5 14.3 158 75-245 167-341 (1118)
314 TIGR02604 Piru_Ver_Nterm putat 90.8 11 0.00023 41.4 17.1 144 88-237 14-204 (367)
315 KOG2280 Vacuolar assembly/sort 90.8 4.7 0.0001 47.0 14.3 164 394-569 647-810 (829)
316 PF07202 Tcp10_C: T-complex pr 90.7 14 0.0003 36.3 15.7 126 98-246 8-136 (179)
317 KOG2314 Translation initiation 90.7 6.4 0.00014 44.3 14.7 182 37-237 351-558 (698)
318 PF03178 CPSF_A: CPSF A subuni 90.4 8.6 0.00019 41.1 15.7 168 66-246 2-202 (321)
319 PRK13616 lipoprotein LpqB; Pro 90.4 17 0.00037 42.5 19.0 192 36-245 353-567 (591)
320 KOG2314 Translation initiation 90.3 2.7 5.8E-05 47.2 11.5 131 137-278 215-365 (698)
321 smart00320 WD40 WD40 repeats. 90.1 0.56 1.2E-05 30.8 4.2 30 215-244 11-40 (40)
322 KOG3617 WD40 and TPR repeat-co 90.1 1.5 3.3E-05 51.3 9.7 57 64-121 79-138 (1416)
323 KOG3914 WD repeat protein WDR4 89.9 0.67 1.4E-05 49.8 6.3 75 36-125 155-232 (390)
324 PF14870 PSII_BNR: Photosynthe 89.1 30 0.00065 36.9 18.1 168 65-241 114-299 (302)
325 COG3391 Uncharacterized conser 89.0 41 0.00088 37.1 22.8 175 65-254 95-291 (381)
326 PRK11138 outer membrane biogen 88.8 42 0.0009 36.9 23.6 176 64-255 168-362 (394)
327 PF11768 DUF3312: Protein of u 88.7 27 0.00059 39.8 18.0 120 437-568 408-533 (545)
328 KOG0280 Uncharacterized conser 88.5 22 0.00047 37.3 15.7 180 65-252 45-248 (339)
329 PRK02888 nitrous-oxide reducta 87.7 16 0.00035 42.5 15.8 97 135-236 323-451 (635)
330 PF04841 Vps16_N: Vps16, N-ter 87.6 8 0.00017 43.1 13.3 96 35-153 219-316 (410)
331 KOG3617 WD40 and TPR repeat-co 87.4 4.3 9.3E-05 47.8 10.9 215 36-278 19-249 (1416)
332 PF10647 Gmad1: Lipoprotein Lp 87.3 38 0.00083 35.0 17.4 100 32-146 23-125 (253)
333 PF00780 CNH: CNH domain; Int 87.2 39 0.00085 34.8 23.9 217 98-327 7-268 (275)
334 KOG0644 Uncharacterized conser 87.0 0.7 1.5E-05 53.9 4.4 96 179-278 193-298 (1113)
335 KOG1310 WD40 repeat protein [G 86.6 1.9 4.1E-05 48.2 7.3 70 175-246 48-125 (758)
336 KOG1354 Serine/threonine prote 85.8 2.6 5.7E-05 44.7 7.6 73 88-161 273-359 (433)
337 PF14655 RAB3GAP2_N: Rab3 GTPa 85.7 11 0.00024 41.9 12.9 47 219-268 310-356 (415)
338 KOG1645 RING-finger-containing 85.6 33 0.00072 37.5 15.6 66 36-116 197-266 (463)
339 PF14783 BBS2_Mid: Ciliary BBS 85.2 19 0.0004 32.4 11.6 53 63-119 22-74 (111)
340 PF07433 DUF1513: Protein of u 85.0 58 0.0013 34.7 19.3 190 37-241 55-280 (305)
341 PLN00033 photosystem II stabil 84.9 65 0.0014 35.8 18.5 92 65-157 249-352 (398)
342 smart00299 CLH Clathrin heavy 84.6 11 0.00023 34.8 10.6 126 436-568 6-135 (140)
343 PF11635 Med16: Mediator compl 84.5 80 0.0017 38.2 20.4 197 99-309 63-345 (753)
344 COG5170 CDC55 Serine/threonine 84.3 8.6 0.00019 40.4 10.3 31 217-248 281-311 (460)
345 KOG4547 WD40 repeat-containing 84.1 50 0.0011 37.6 16.9 96 190-286 69-171 (541)
346 KOG1334 WD40 repeat protein [G 84.0 3.5 7.5E-05 45.7 7.7 115 88-211 337-468 (559)
347 KOG1912 WD40 repeat protein [G 83.9 51 0.0011 39.0 17.0 59 43-116 25-97 (1062)
348 PF14870 PSII_BNR: Photosynthe 83.3 68 0.0015 34.2 23.0 251 74-336 4-285 (302)
349 PF07995 GSDH: Glucose / Sorbo 82.9 38 0.00082 36.5 15.4 63 89-151 3-71 (331)
350 KOG1645 RING-finger-containing 82.9 19 0.00041 39.3 12.5 139 133-278 194-350 (463)
351 TIGR01063 gyrA DNA gyrase, A s 82.8 57 0.0012 39.7 18.2 88 227-319 699-792 (800)
352 PF10395 Utp8: Utp8 family; I 82.6 61 0.0013 38.2 17.4 164 88-266 130-324 (670)
353 PF12234 Rav1p_C: RAVE protein 82.2 17 0.00036 42.6 12.8 106 37-159 34-155 (631)
354 KOG2395 Protein involved in va 81.7 22 0.00047 40.2 12.7 84 64-151 402-490 (644)
355 KOG1409 Uncharacterized conser 81.4 7.1 0.00015 41.6 8.5 52 66-119 178-230 (404)
356 KOG4190 Uncharacterized conser 80.9 3.9 8.4E-05 45.7 6.7 58 63-121 754-818 (1034)
357 PF05935 Arylsulfotrans: Aryls 80.8 22 0.00047 40.6 13.2 54 64-120 126-179 (477)
358 KOG2079 Vacuolar assembly/sort 79.9 3.5 7.6E-05 49.8 6.4 82 193-274 101-190 (1206)
359 PRK13979 DNA topoisomerase IV 79.7 1.6E+02 0.0035 36.6 20.6 90 63-157 561-686 (957)
360 PF06433 Me-amine-dh_H: Methyl 79.0 1E+02 0.0022 33.4 21.3 248 37-324 40-330 (342)
361 KOG2377 Uncharacterized conser 78.9 19 0.00042 39.9 11.0 70 36-118 70-142 (657)
362 KOG1334 WD40 repeat protein [G 77.4 30 0.00066 38.6 12.1 156 77-244 134-310 (559)
363 KOG4640 Anaphase-promoting com 76.5 8.4 0.00018 44.1 7.8 82 187-268 28-114 (665)
364 PF00930 DPPIV_N: Dipeptidyl p 76.4 76 0.0017 34.4 15.4 119 36-169 187-324 (353)
365 PRK13684 Ycf48-like protein; P 76.2 1.2E+02 0.0026 32.8 18.0 63 88-152 215-279 (334)
366 KOG2377 Uncharacterized conser 75.8 21 0.00045 39.7 10.3 64 214-278 64-131 (657)
367 PF07569 Hira: TUP1-like enhan 75.2 23 0.0005 35.8 10.2 74 78-155 6-90 (219)
368 KOG1064 RAVE (regulator of V-A 75.1 12 0.00026 48.0 9.1 207 64-326 2188-2410(2439)
369 KOG4659 Uncharacterized conser 74.8 1.5E+02 0.0032 37.5 17.6 25 302-326 887-912 (1899)
370 PRK12634 flgD flagellar basal 74.8 10 0.00022 38.5 7.4 88 64-156 122-213 (221)
371 PF08553 VID27: VID27 cytoplas 74.5 17 0.00037 43.7 10.1 86 64-153 550-639 (794)
372 KOG1409 Uncharacterized conser 74.3 1.3E+02 0.0029 32.4 18.3 220 30-278 23-268 (404)
373 PF10493 Rod_C: Rough deal pro 74.2 56 0.0012 37.9 14.1 81 488-579 460-543 (551)
374 PF03178 CPSF_A: CPSF A subuni 73.6 1.3E+02 0.0028 32.0 17.3 130 66-209 62-202 (321)
375 PF05096 Glu_cyclase_2: Glutam 73.3 1.2E+02 0.0026 31.7 14.7 145 76-241 34-188 (264)
376 KOG4714 Nucleoporin [Nuclear s 72.4 87 0.0019 32.5 13.1 106 203-309 161-286 (319)
377 PRK12633 flgD flagellar basal 72.2 12 0.00025 38.3 7.1 87 64-156 129-220 (230)
378 KOG1064 RAVE (regulator of V-A 71.8 10 0.00022 48.5 7.6 167 63-246 2227-2398(2439)
379 PRK13684 Ycf48-like protein; P 70.9 1.6E+02 0.0034 31.8 27.1 224 88-323 46-296 (334)
380 PF12657 TFIIIC_delta: Transcr 70.2 27 0.00058 33.9 8.9 29 89-117 87-122 (173)
381 KOG2395 Protein involved in va 69.0 12 0.00025 42.3 6.6 68 35-116 432-500 (644)
382 KOG4121 Nuclear pore complex, 67.8 69 0.0015 39.1 12.9 148 510-681 767-946 (1128)
383 PF07569 Hira: TUP1-like enhan 67.8 35 0.00075 34.6 9.4 59 189-248 20-97 (219)
384 COG3386 Gluconolactonase [Carb 67.0 1.8E+02 0.004 31.1 21.0 194 64-271 45-266 (307)
385 PF06977 SdiA-regulated: SdiA- 63.7 54 0.0012 33.9 10.0 67 36-113 174-247 (248)
386 TIGR03606 non_repeat_PQQ dehyd 63.4 2.6E+02 0.0057 31.6 19.9 57 88-144 30-90 (454)
387 PF00780 CNH: CNH domain; Int 63.2 1.8E+02 0.004 29.7 25.3 61 40-116 3-64 (275)
388 PF14583 Pectate_lyase22: Olig 62.8 2.5E+02 0.0053 31.1 16.8 163 66-243 169-378 (386)
389 COG3204 Uncharacterized protei 62.3 2.2E+02 0.0047 30.3 18.0 61 88-152 86-148 (316)
390 KOG4714 Nucleoporin [Nuclear s 62.3 35 0.00075 35.3 8.0 160 77-246 81-254 (319)
391 PF14761 HPS3_N: Hermansky-Pud 61.4 45 0.00097 33.6 8.5 72 154-237 2-80 (215)
392 PF03177 Nucleoporin_C: Non-re 60.9 16 0.00034 42.7 6.3 143 536-683 272-453 (586)
393 PF00930 DPPIV_N: Dipeptidyl p 60.6 15 0.00033 39.9 5.7 79 41-124 1-80 (353)
394 PF14727 PHTB1_N: PTHB1 N-term 60.2 1.9E+02 0.0041 32.4 14.1 133 99-241 38-199 (418)
395 KOG0309 Conserved WD40 repeat- 59.8 12 0.00027 43.5 4.8 83 63-152 177-267 (1081)
396 KOG1275 PAB-dependent poly(A) 59.7 73 0.0016 38.5 10.9 131 63-209 194-342 (1118)
397 KOG4677 Golgi integral membran 59.6 1E+02 0.0022 34.2 11.3 78 548-625 217-296 (554)
398 smart00036 CNH Domain found in 59.0 2.5E+02 0.0053 29.8 23.0 110 216-325 151-281 (302)
399 PF00637 Clathrin: Region in C 58.8 4.8 0.0001 37.3 1.2 125 439-571 9-138 (143)
400 KOG2695 WD40 repeat protein [G 58.6 45 0.00099 35.8 8.3 119 181-326 254-388 (425)
401 PF14583 Pectate_lyase22: Olig 58.4 2E+02 0.0043 31.8 13.5 62 202-269 169-241 (386)
402 PF07676 PD40: WD40-like Beta 57.8 28 0.00061 24.3 4.9 21 217-237 9-29 (39)
403 PRK06655 flgD flagellar basal 57.4 34 0.00074 34.8 7.2 81 64-152 126-212 (225)
404 KOG3621 WD40 repeat-containing 56.1 2.4E+02 0.0051 33.3 14.1 102 36-152 37-144 (726)
405 KOG1832 HIV-1 Vpr-binding prot 56.0 20 0.00043 42.8 5.6 210 78-345 1094-1320(1516)
406 KOG4460 Nuclear pore complex, 55.3 23 0.0005 39.9 5.8 82 31-116 102-198 (741)
407 COG5167 VID27 Protein involved 54.5 28 0.0006 39.2 6.2 69 37-119 566-635 (776)
408 PF07899 Frigida: Frigida-like 53.9 1E+02 0.0022 32.8 10.2 122 333-466 51-203 (290)
409 PF07202 Tcp10_C: T-complex pr 53.1 2.3E+02 0.0051 27.8 13.7 22 225-246 43-64 (179)
410 PF13449 Phytase-like: Esteras 53.0 1.6E+02 0.0035 31.6 12.0 85 65-149 111-231 (326)
411 COG4590 ABC-type uncharacteriz 52.1 54 0.0012 36.5 7.8 165 73-245 208-385 (733)
412 PF15390 DUF4613: Domain of un 51.2 4.6E+02 0.0099 30.6 19.1 61 221-288 343-406 (671)
413 PF10313 DUF2415: Uncharacteri 50.7 40 0.00087 24.9 4.6 29 217-245 1-32 (43)
414 COG3490 Uncharacterized protei 50.6 3.4E+02 0.0073 28.9 14.6 147 64-230 47-239 (366)
415 PLN00033 photosystem II stabil 50.5 4E+02 0.0086 29.7 22.3 143 89-243 240-396 (398)
416 PF14649 Spatacsin_C: Spatacsi 50.5 1.5E+02 0.0032 31.6 10.8 117 561-682 78-212 (296)
417 PF09384 UTP15_C: UTP15 C term 50.4 74 0.0016 30.1 7.8 38 534-571 23-61 (148)
418 PF02897 Peptidase_S9_N: Proly 47.7 4.1E+02 0.009 29.1 20.8 58 37-105 128-188 (414)
419 PHA02248 hypothetical protein 46.7 26 0.00056 32.8 3.9 61 40-112 50-124 (204)
420 TIGR01643 YD_repeat_2x YD repe 46.1 55 0.0012 23.3 4.9 40 71-113 1-41 (42)
421 PF12234 Rav1p_C: RAVE protein 45.6 2.4E+02 0.0053 33.2 12.4 88 199-286 49-155 (631)
422 PRK12813 flgD flagellar basal 45.5 78 0.0017 32.2 7.5 84 65-159 125-215 (223)
423 PF06433 Me-amine-dh_H: Methyl 45.1 4.4E+02 0.0095 28.6 16.5 208 37-255 90-329 (342)
424 PF13637 Ank_4: Ankyrin repeat 44.7 60 0.0013 24.4 5.2 49 511-565 6-54 (54)
425 PF13860 FlgD_ig: FlgD Ig-like 44.5 34 0.00073 28.7 4.1 32 65-96 26-57 (81)
426 PRK05560 DNA gyrase subunit A; 44.3 6.8E+02 0.015 30.6 23.1 215 89-320 538-796 (805)
427 PRK12812 flgD flagellar basal 44.3 1.1E+02 0.0023 32.0 8.4 89 64-159 141-233 (259)
428 PRK13613 lipoprotein LpqB; Pro 43.2 6.2E+02 0.013 29.8 18.6 188 33-241 363-577 (599)
429 PF12796 Ank_2: Ankyrin repeat 42.9 45 0.00097 27.7 4.7 50 508-563 28-77 (89)
430 cd01272 FE65_N Fe65 Phosphotyr 42.5 39 0.00084 31.2 4.3 39 95-142 49-87 (138)
431 PF11134 Phage_stabilise: Phag 42.5 5.4E+02 0.012 28.9 19.1 273 36-336 90-413 (469)
432 PF03088 Str_synth: Strictosid 42.4 1.7E+02 0.0038 25.2 8.1 76 37-114 2-83 (89)
433 PF08596 Lgl_C: Lethal giant l 40.2 4.2E+02 0.009 29.4 12.9 119 89-208 3-172 (395)
434 TIGR01062 parC_Gneg DNA topois 39.7 7.3E+02 0.016 30.0 15.5 119 189-314 534-671 (735)
435 COG3386 Gluconolactonase [Carb 38.8 5.2E+02 0.011 27.6 20.4 86 202-289 144-245 (307)
436 PF13570 PQQ_3: PQQ-like domai 37.7 75 0.0016 22.4 4.4 37 75-115 1-38 (40)
437 KOG1832 HIV-1 Vpr-binding prot 37.6 66 0.0014 38.8 6.1 173 32-235 1101-1285(1516)
438 PF12796 Ank_2: Ankyrin repeat 37.0 53 0.0011 27.2 4.2 47 511-567 2-48 (89)
439 KOG1898 Splicing factor 3b, su 36.9 2.4E+02 0.0051 35.0 10.6 130 73-209 477-618 (1205)
440 PF02897 Peptidase_S9_N: Proly 36.7 68 0.0015 35.4 6.2 52 221-275 128-185 (414)
441 PF05593 RHS_repeat: RHS Repea 34.9 72 0.0016 22.5 3.9 29 71-102 1-29 (38)
442 COG3391 Uncharacterized conser 34.9 6.4E+02 0.014 27.6 20.0 76 34-121 117-195 (381)
443 TIGR02171 Fb_sc_TIGR02171 Fibr 34.5 1.9E+02 0.0042 35.3 9.4 57 178-234 348-416 (912)
444 PF12657 TFIIIC_delta: Transcr 34.2 2.9E+02 0.0063 26.6 9.4 30 217-246 86-121 (173)
445 TIGR02171 Fb_sc_TIGR02171 Fibr 34.1 1.5E+02 0.0034 36.1 8.6 86 192-277 319-417 (912)
446 PRK09619 flgD flagellar basal 33.7 1.3E+02 0.0029 30.4 7.1 76 64-149 123-201 (218)
447 KOG2063 Vacuolar assembly/sort 33.1 8.8E+02 0.019 29.9 14.7 52 272-323 214-277 (877)
448 PF08801 Nucleoporin_N: Nup133 32.1 5.2E+02 0.011 28.6 12.3 30 218-247 191-220 (422)
449 PF10214 Rrn6: RNA polymerase 31.6 1E+03 0.022 28.9 24.1 42 76-117 133-177 (765)
450 PRK00400 hisE phosphoribosyl-A 31.6 3.3E+02 0.0072 24.3 8.3 82 488-583 6-90 (105)
451 PF10168 Nup88: Nuclear pore c 31.2 1E+03 0.022 28.8 21.6 24 187-210 157-180 (717)
452 PF07894 DUF1669: Protein of u 31.1 71 0.0015 33.6 4.7 53 365-417 134-198 (284)
453 TIGR03066 Gem_osc_para_1 Gemma 31.1 2E+02 0.0044 25.9 6.9 66 89-155 34-105 (111)
454 PF08596 Lgl_C: Lethal giant l 31.0 1.5E+02 0.0032 33.0 7.5 85 64-151 233-325 (395)
455 KOG2444 WD40 repeat protein [G 30.6 1.2E+02 0.0025 31.0 5.8 99 141-245 69-176 (238)
456 KOG2695 WD40 repeat protein [G 30.4 1.2E+02 0.0025 32.9 6.0 60 88-152 253-319 (425)
457 PF07035 Mic1: Colon cancer-as 30.2 2.7E+02 0.0059 27.0 8.2 100 357-472 15-128 (167)
458 KOG4460 Nuclear pore complex, 29.3 5E+02 0.011 29.9 10.8 22 219-240 106-127 (741)
459 PRK13615 lipoprotein LpqB; Pro 29.1 3.9E+02 0.0086 31.1 10.7 61 215-277 415-487 (557)
460 PF14695 LINES_C: Lines C-term 29.0 45 0.00098 24.1 1.9 19 673-691 6-24 (39)
461 KOG3717 Carnitine O-acyltransf 28.3 2.5E+02 0.0054 32.3 8.4 122 388-541 394-523 (612)
462 PF01453 B_lectin: D-mannose b 27.9 3.3E+02 0.0071 24.3 8.0 51 64-115 27-78 (114)
463 PF10214 Rrn6: RNA polymerase 27.0 6E+02 0.013 30.9 12.4 111 33-157 146-273 (765)
464 PRK13615 lipoprotein LpqB; Pro 27.0 1.1E+03 0.023 27.7 18.8 157 33-212 334-505 (557)
465 KOG1008 Uncharacterized conser 27.0 57 0.0012 37.8 3.3 74 194-268 168-252 (783)
466 PRK13613 lipoprotein LpqB; Pro 26.7 4.6E+02 0.01 30.9 10.9 59 217-276 455-523 (599)
467 COG5184 ATS1 Alpha-tubulin sup 26.6 6E+02 0.013 28.8 11.0 42 78-120 221-264 (476)
468 PF01436 NHL: NHL repeat; Int 26.5 1.2E+02 0.0026 19.8 3.6 23 220-242 5-27 (28)
469 TIGR02276 beta_rpt_yvtn 40-res 26.0 2.2E+02 0.0048 19.6 5.3 40 226-267 1-41 (42)
470 PF01453 B_lectin: D-mannose b 25.6 4.8E+02 0.01 23.2 8.7 62 91-163 21-82 (114)
471 KOG4649 PQQ (pyrrolo-quinoline 25.1 8.2E+02 0.018 25.7 19.3 57 189-245 229-299 (354)
472 PF09958 DUF2192: Uncharacteri 25.1 7.5E+02 0.016 25.3 10.5 63 382-466 119-181 (231)
473 KOG0994 Extracellular matrix g 24.4 1.2E+03 0.026 29.7 13.4 120 452-571 1473-1606(1758)
474 PF12341 DUF3639: Protein of u 24.2 1.6E+02 0.0034 19.5 3.7 25 218-244 3-27 (27)
475 PF14655 RAB3GAP2_N: Rab3 GTPa 24.0 1.2E+02 0.0026 33.9 5.2 48 64-114 87-144 (415)
476 KOG4649 PQQ (pyrrolo-quinoline 23.7 8.7E+02 0.019 25.5 21.9 118 43-168 12-131 (354)
477 COG0140 HisI Phosphoribosyl-AT 23.3 5E+02 0.011 22.6 7.9 83 488-583 2-86 (92)
478 KOG1916 Nuclear protein, conta 23.1 2.9E+02 0.0063 33.7 8.1 107 133-245 133-264 (1283)
479 PF13812 PPR_3: Pentatricopept 22.7 1.3E+02 0.0028 19.6 3.4 26 545-570 4-29 (34)
480 PF12768 Rax2: Cortical protei 22.1 9.4E+02 0.02 25.3 14.2 54 65-119 15-75 (281)
481 PF07995 GSDH: Glucose / Sorbo 22.0 7.9E+02 0.017 26.3 11.0 58 36-106 5-71 (331)
482 COG3490 Uncharacterized protei 21.9 2.6E+02 0.0056 29.6 6.6 65 39-113 120-186 (366)
483 PRK13614 lipoprotein LpqB; Pro 21.9 1.3E+03 0.029 27.0 18.0 161 102-276 315-502 (573)
484 TIGR01063 gyrA DNA gyrase, A s 21.7 1.5E+03 0.033 27.6 16.0 146 94-244 491-666 (800)
485 PF10395 Utp8: Utp8 family; I 21.3 1.4E+03 0.031 27.2 13.4 71 133-209 231-305 (670)
486 cd00216 PQQ_DH Dehydrogenases 21.0 1.2E+03 0.027 26.3 17.3 104 64-169 69-192 (488)
487 KOG3630 Nuclear pore complex, 20.3 1.3E+03 0.028 29.4 12.7 184 91-279 55-263 (1405)
No 1
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-158 Score=1284.59 Aligned_cols=671 Identities=40% Similarity=0.664 Sum_probs=635.4
Q ss_pred CCCCcccccccccccEEEecccccccCCCCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEE
Q 005559 1 MANVSVAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE 80 (691)
Q Consensus 1 ~~~~~~~~~W~~l~~~~yr~~~~y~~~w~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~s 80 (691)
|++.+|+++|++|+|+||||.++|.|.|.-+|+....+++||+|||||++|+|+|++++. +..+.|+||+.+|+++++
T Consensus 1 ~a~~~p~~eWell~d~fYrk~eiy~~~W~l~dl~~~~fa~Ap~gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~lL~~ 78 (829)
T KOG2280|consen 1 MAMKYPTAEWELLLDVFYRKQEIYFMKWPLTDLYYVYFACAPFGGPIAVTRSPSKLVPLY--SARPYIRIFNISGQLLGR 78 (829)
T ss_pred CCCcCcccchhhhHhhhhhhhhhcccCCcccccceeEEEecccCCceEEEeccccccccc--ccceeEEEEeccccchHH
Confidence 788999999999999999999999999966899999999999999999999999999865 478999999999999999
Q ss_pred EEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecC
Q 005559 81 TVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADF 160 (691)
Q Consensus 81 i~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~ 160 (691)
+.|++ +++++|+||.+|+|+||..||+|++|+++|++.+ +++.+.|+....|.+|++|.+|++++|.+++++.++++
T Consensus 79 ~~w~~--~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie-~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~ 155 (829)
T KOG2280|consen 79 ILWKH--GELIGMGWSDDEELICVQKDGTVHVYGLLGEFIE-SNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGV 155 (829)
T ss_pred HHhcC--CCeeeecccCCceEEEEeccceEEEeecchhhhc-ccccccccccCceeEEEEecCceEEEecCCcEEEEcCC
Confidence 99998 8999999999999999999999999999999998 55888888888999999999999999999999999999
Q ss_pred CCceEEEcCCCCcCCC-CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEe
Q 005559 161 ATMKVCELARPEVEEL-PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFT 235 (691)
Q Consensus 161 ~~~~~~~l~~~~l~~~-~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t 235 (691)
++|..+++++.|.... ++||++++|+++++.-..|..+....++..+....+ ....+.|.+|++|||+++||++|
T Consensus 156 ~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt 235 (829)
T KOG2280|consen 156 EEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYT 235 (829)
T ss_pred CcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEe
Confidence 9999999998665444 699999998776655555544444555556555444 12347899999999999999999
Q ss_pred eCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecCCCeEEeecCCceEEEecCc
Q 005559 236 HDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSS 315 (691)
Q Consensus 236 ~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d~~~~l~~E~DGvRIit~~~ 315 (691)
.+|+||+++.|++++++||++....+|.||+|||||+|+++|++.+.++||.|++|.|+||..++|++|+|||||||+++
T Consensus 236 ~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvgp~gd~V~f~yd~t~~l~~E~DGVRI~t~t~ 315 (829)
T KOG2280|consen 236 ETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVGPPGDSVQFYYDETAILSAEVDGVRIITSTS 315 (829)
T ss_pred cCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEcCCCCccccccCCCceeeeccCeeEEeccch
Confidence 99999999999999999999888889999999999999999999999999999999999999989999999999999999
Q ss_pred ceeeeccchhhhhhcccCCCChhhHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHHHHHHcccCCCHHHHHHHHHHHhh
Q 005559 316 MEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASY 395 (691)
Q Consensus 316 ~efL~~Vp~~~~~If~igS~~Pga~L~~A~~~~~~~~~~a~e~lr~i~~~L~~AV~~CI~AA~~e~d~~~Qk~LL~AAsf 395 (691)
+|||+|||.++++||+|||++|||+|++|.++|++++++|||+|++++++|.+||++||+||++||.|++||.|||||||
T Consensus 316 ~EFl~rvp~~~enIF~igS~ePgA~L~eA~q~~e~~S~kade~L~~~~e~L~~aV~~CI~aA~~ef~pe~QK~LL~AAsf 395 (829)
T KOG2280|consen 316 HEFLQRVPAETENIFKIGSTEPGALLYEAFQKMEQKSGKADEYLSEIREDLYKAVDDCIEAACDEFQPEEQKSLLRAASF 395 (829)
T ss_pred HHHHHhCChhhhhHhhcCCCCchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhhcCCChHHHHHHHhHhhhhhccCCCCCccccCHHHHhcCChHHHHHHHHHcCCHHHHHHHHHHhCCCh---hHHHH
Q 005559 396 GQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ---EVVIM 472 (691)
Q Consensus 396 Gk~~~~~~~~~~fv~~c~~LRVLN~lr~~~igi~lT~~Q~~~l~~~~li~rL~~r~~~~lA~~I~~~l~~~~---~~Vl~ 472 (691)
||+|+.++|+++|+.+|+.|||||++|++.+|||||++||.+|+.+++|+||+.|++|.+|++||+++++|. ++||.
T Consensus 396 Gk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~ 475 (829)
T KOG2280|consen 396 GKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLL 475 (829)
T ss_pred cccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHhcc--CCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCcCcccccccCCchHHHHH
Q 005559 473 HWACSKITASLAIPDVTLLEILLDKLKL--CKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALV 550 (691)
Q Consensus 473 hWA~~kI~~~~~~~D~~l~~~I~~kl~~--~~~is~a~IA~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl~~~~~~~AL~ 550 (691)
|||+.||+ +++.+|+++++.|.+||+. .+||||++||++||++||++||++|+++||++..|||+||+|++++.||+
T Consensus 476 ~Wa~~kI~-~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 476 EWARRKIK-QSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHHh-ccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 99999995 5588999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCchHHHHHHHHHHhhCChhhHHHHHhcChhhHHHHHHHHHhcCHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC
Q 005559 551 KATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKN 630 (691)
Q Consensus 551 kA~~S~D~dLi~~vll~l~~~~~~~~f~~~l~~~~~a~~l~~~y~~~~~~~~L~~~y~q~d~~~~~~~~~l~~~~~~~~~ 630 (691)
||++|||||||++||+||+++++.++|+++|+..|+|.+||++|+|++|+..|+|||+|+|+++++|.++++.++.....
T Consensus 555 kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~ 634 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETI 634 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887766
Q ss_pred CCCCCCCCCccchHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHHhhc-ccc
Q 005559 631 PMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLSVIQEANKRC-CVF 687 (691)
Q Consensus 631 ~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~f~~~~~~~~~~Ll~~Q~~L~~~~-~~~ 687 (691)
+ +|...|+.|...|.++++..|++|+++||+||+++|++||.+. |+|
T Consensus 635 ~----------~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f 682 (829)
T KOG2280|consen 635 E----------GRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSF 682 (829)
T ss_pred c----------ccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6 8999999999999999999999999999999999999999998 555
No 2
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=100.00 E-value=2.7e-92 Score=775.67 Aligned_cols=397 Identities=44% Similarity=0.768 Sum_probs=358.7
Q ss_pred ccccccccccEEEecccccccCC-CCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCe-EEEEcCCCceeEEEEe
Q 005559 6 VAAEWQLVYNRYYRKPELYQMRW-KHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRK-LRIFNSAGVLISETVW 83 (691)
Q Consensus 6 ~~~~W~~l~~~~yr~~~~y~~~w-~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~-I~Iys~sG~ll~si~~ 83 (691)
||++|++|||+||||+++|+|+| .+.++++++||+||+|||||+.||++|++... +.+|. |+|||++|++|++|+|
T Consensus 1 ps~~W~~L~d~~Yrk~~ly~m~W~~~~~l~~~~va~a~~gGpIAi~~d~~k~~~~~--~~~p~~I~iys~sG~ll~~i~w 78 (410)
T PF04841_consen 1 PSANWEKLGDVYYRKRELYSMSWSLKDDLSDYIVAVAPYGGPIAIIRDESKLVPVG--SAKPNSIQIYSSSGKLLSSIPW 78 (410)
T ss_pred CCcCcEECCCEEEEEEEeccCCCCccccccceeEEEcCCCceEEEEecCccccccc--CCCCcEEEEECCCCCEeEEEEE
Confidence 79999999999999999999999 44688899999999999999999999998772 35665 9999999999999999
Q ss_pred cCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEE-----EEeCCceEEEecCCeEEEEe
Q 005559 84 KNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVEC-----VFWGNGVVCVTEANRYFCMA 158 (691)
Q Consensus 84 ~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~-----~~~~~G~vllt~~~~~~~v~ 158 (691)
++ ++|++|+|+.+|+||||++||+|++||++|++ +++++.. +++.+|.+| .+|++|++++|.+++||.++
T Consensus 79 ~~--~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~--i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 79 DS--GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEE--IEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVN 153 (410)
T ss_pred CC--CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhh--ccccCcccccccccccCCCCEEEECCCCeEEEEe
Confidence 99 89999999999999999999999999999999 6666543 447788888 45779999999999999999
Q ss_pred cCCCc-eEEEcCCCC-cCC---CCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-cccCCCeeEEEECCCCCEEE
Q 005559 159 DFATM-KVCELARPE-VEE---LPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-KVDDTLSQKMAVSPNGNFVA 232 (691)
Q Consensus 159 n~~~~-~~~~l~~~~-l~~---~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-~~~~~~i~~Ia~SpnG~~IA 232 (691)
|++++ +.+.+++.+ ... ....|..+ +.++.++..+++++.+++++.++..... ....++|.+|++||||++||
T Consensus 154 n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iA 232 (410)
T PF04841_consen 154 NIDEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIA 232 (410)
T ss_pred CccccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEE
Confidence 99876 334444322 211 12223222 3577889999999999999988877653 23468999999999999999
Q ss_pred EEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecCCCeEEeecCCceEEEe
Q 005559 233 CFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILS 312 (691)
Q Consensus 233 l~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d~~~~l~~E~DGvRIit 312 (691)
+++.+|++||+++||+++++|++++...+|.||.|||+|+|+++|+++++|+||++++++|+|++++++++|+||+||||
T Consensus 233 l~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg~~~~~~~~~~~~~~~l~~E~DG~riit 312 (410)
T PF04841_consen 233 LFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVGPDGDSISFWYDGPVILVSEIDGVRIIT 312 (410)
T ss_pred EEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEECCCCCceEEeccCceEEeccCCceEEEe
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeeccchhhhhhcccCCCChhhHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHHHHHHcccCCCHHHHHHHHHH
Q 005559 313 NSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRA 392 (691)
Q Consensus 313 ~~~~efL~~Vp~~~~~If~igS~~Pga~L~~A~~~~~~~~~~a~e~lr~i~~~L~~AV~~CI~AA~~e~d~~~Qk~LL~A 392 (691)
++++|||||||+++++||+|||++|||+|++|+++|++++|+|||+||+|+++|++||++||+||++||||++||+||||
T Consensus 313 ~~~~~~l~~Vp~~~~~if~igs~~p~a~L~~a~~~~~~~~~~a~e~lr~i~~~L~~Av~~Ci~AA~~e~d~~~Qk~LL~A 392 (410)
T PF04841_consen 313 STSHEFLQRVPDSTENIFRIGSTSPGAILLDAYEEFEKRSPKADEYLRSIKDQLEEAVDDCIDAAGYEFDPDWQKRLLRA 392 (410)
T ss_pred CCceEEEEECCHHHHHHhcccCCCccHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhchhhcCCChHHHHH
Q 005559 393 ASYGQAFCSNFQRDRIQE 410 (691)
Q Consensus 393 AsfGk~~~~~~~~~~fv~ 410 (691)
|||||+|++.|+++.||+
T Consensus 393 AsfGk~fl~~~~~d~fv~ 410 (410)
T PF04841_consen 393 ASFGKSFLDNYNPDEFVR 410 (410)
T ss_pred HHhchhhhccCCchhccC
Confidence 999999999999999984
No 3
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=100.00 E-value=1e-40 Score=352.85 Aligned_cols=172 Identities=42% Similarity=0.662 Sum_probs=168.4
Q ss_pred CCHHHHHHHHHHhCcHHHHHHHHhcCCCCcCcccccccCCchHHHHHHHHHcCCchHHHHHHHHHHhhCChhhHHHHHhc
Q 005559 504 ISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQT 583 (691)
Q Consensus 504 is~a~IA~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl~~~~~~~AL~kA~~S~D~dLi~~vll~l~~~~~~~~f~~~l~~ 583 (691)
|||++||++|+++||++||++||++||++++|||+||+||+++.||.||++||||||||+||+||+++++.++|+++|++
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~~Ep~~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~~l~~s~f~~il~~ 80 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLELEPRASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKRKLSLSQFFKILNQ 80 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHcCCChHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCCCCCCCCCCccchHHHHHHHHhhhhhccchhHH
Q 005559 584 RPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFE 663 (691)
Q Consensus 584 ~~~a~~l~~~y~~~~~~~~L~~~y~q~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~f~ 663 (691)
+|.|.+||..|||++|+++|++||+|+|++.++|++++++++++.+.+ +|.+.|++|.++|++.+++.|+
T Consensus 81 ~p~a~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~~~~~----------~~~~~L~~a~~~y~~~k~~~f~ 150 (319)
T PF04840_consen 81 NPVASNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQKDVE----------EKISFLKQAQKLYSKSKNDAFE 150 (319)
T ss_pred CcchHHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhCCChH----------HHHHHHHHHHHHHHhcchhHHH
Confidence 999999999999999999999999999999999999999999887777 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 005559 664 SKAAEEHAKLLSVIQEANKRCC 685 (691)
Q Consensus 664 ~~~~~~~~~Ll~~Q~~L~~~~~ 685 (691)
++++++|++||++|++|+++++
T Consensus 151 ~~~~e~q~~Ll~~Q~~Le~~~~ 172 (319)
T PF04840_consen 151 AKLIEEQIKLLEYQKELEEKYN 172 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999984
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=9.8e-20 Score=189.34 Aligned_cols=255 Identities=14% Similarity=0.107 Sum_probs=202.7
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCC---eEEEEEeCCe
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ---TLICVVQDGT 109 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de---~Lv~v~~DGt 109 (691)
....+++|++|..||+.+ ..+.+++|+. +++++.++.+|. ++|.++.|.|.. .+++++.||+
T Consensus 177 Pis~~~fS~ds~~laT~s------------wsG~~kvW~~~~~~~~~~l~gH~--~~v~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGS------------WSGLVKVWSVPQCNLLQTLRGHT--SRVGAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred cceeeEeecCCCeEEEee------------cCCceeEeecCCcceeEEEeccc--cceeeEEEccCCCccceeeeccCCc
Confidence 345789999999999885 7999999996 899999999999 899999999962 4789999999
Q ss_pred EEEEeCCCC-eeccccCCCccccccCeEEEEEeCCceEEEecCC-eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCc
Q 005559 110 VYRYNIHAE-LIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKY 187 (691)
Q Consensus 110 V~ly~~~G~-~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~ 187 (691)
|++|+..++ .++ .+.+| ...|..++|.|+|..+.|++. +.|.+|+++....-.+.+ ++.....++ .|
T Consensus 243 vklw~~~~e~~l~-~l~gH----~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE---GHs~~v~~i---af 311 (459)
T KOG0272|consen 243 VKLWKLSQETPLQ-DLEGH----LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE---GHSKGVFSI---AF 311 (459)
T ss_pred eeeeccCCCcchh-hhhcc----hhhheeeeecCCCceeeecccccchhhcccccchhhHhhc---cccccccee---Ee
Confidence 999999884 556 56555 467999999999999999996 588899986443222211 122333333 47
Q ss_pred CCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCC----
Q 005559 188 TMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES---- 258 (691)
Q Consensus 188 S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~---- 258 (691)
-+||++.+..+.|..-.+||...-. ..|.++|..|+|||||.+||+++.|++++||.--..+.+.....++
T Consensus 312 ~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS 391 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVS 391 (459)
T ss_pred cCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhh
Confidence 7899999999999999999987332 5699999999999999999999999999999866555544333221
Q ss_pred --C---CCCCeEEEecCceEEEEEcC-----eEEEEcCCCC--ceEeecCCCeEEeecCCc-eEEEec
Q 005559 259 --A---LPPEQIAWCGMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSN 313 (691)
Q Consensus 259 --~---~~p~q~~WCG~davvl~~~~-----~l~liGp~~~--~v~f~~d~~~~l~~E~DG-vRIit~ 313 (691)
. ..-.-++=||-|..+-.|.. .-.|.||.+. ++.++||++.++.+..|- +|+|++
T Consensus 392 ~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 392 QVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWRP 459 (459)
T ss_pred heEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeeccC
Confidence 1 12245667899999999975 3468999997 888999999999999997 888863
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=7.9e-17 Score=165.83 Aligned_cols=256 Identities=17% Similarity=0.182 Sum_probs=181.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCc-eeEEEEecCCCCCEEEEEecC-----CC-eEEEEEeC
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGV-LISETVWKNPGGRLIGMSWSE-----DQ-TLICVVQD 107 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~-ll~si~~~~~~~~Iv~~~fs~-----de-~Lv~v~~D 107 (691)
..||.||+|..||... .+++|++|++ +|+ ...+++.|. ..|.+++|-| .. .|++.+.|
T Consensus 161 lcvawsPDgk~iASG~------------~dg~I~lwdpktg~~~g~~l~gH~--K~It~Lawep~hl~p~~r~las~skD 226 (480)
T KOG0271|consen 161 LCVAWSPDGKKIASGS------------KDGSIRLWDPKTGQQIGRALRGHK--KWITALAWEPLHLVPPCRRLASSSKD 226 (480)
T ss_pred EEEEECCCcchhhccc------------cCCeEEEecCCCCCcccccccCcc--cceeEEeecccccCCCccceecccCC
Confidence 3789999999999885 6899999996 454 556699998 8999999976 33 46789999
Q ss_pred CeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCC-ceEEEcCCCCcCCCCceEEEe---
Q 005559 108 GTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFAT-MKVCELARPEVEELPHCVAVI--- 183 (691)
Q Consensus 108 GtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~-~~~~~l~~~~l~~~~~~w~vi--- 183 (691)
|+|+|||..+......+..| ...|..++--+.|++.-.+..+.+.+|.... ...+.|.... +-....++-
T Consensus 227 g~vrIWd~~~~~~~~~lsgH----T~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHa--hwvN~lalsTdy 300 (480)
T KOG0271|consen 227 GSVRIWDTKLGTCVRTLSGH----TASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHA--HWVNHLALSTDY 300 (480)
T ss_pred CCEEEEEccCceEEEEeccC----ccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccc--hheeeeeccchh
Confidence 99999999654333366666 3456665533488877666677777776543 2333333210 001111110
Q ss_pred ---cCCcCC-------------------------CCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCC
Q 005559 184 ---EPKYTM-------------------------TGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGN 229 (691)
Q Consensus 184 ---~~~~S~-------------------------d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~ 229 (691)
.-.|.+ ++...|..+.|.|+++|+..... ..|+.-|.+++|||||+
T Consensus 301 ~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r 380 (480)
T KOG0271|consen 301 VLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR 380 (480)
T ss_pred hhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc
Confidence 000111 34568899999999999987544 46888899999999999
Q ss_pred EEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEec---------CceEEEEEcCe-----EEEEcCCCC--ceEe
Q 005559 230 FVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCG---------MDSVLLYWNDM-----LVMVAPQAE--PVQY 293 (691)
Q Consensus 230 ~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG---------~davvl~~~~~-----l~liGp~~~--~v~f 293 (691)
+||+++-|..+++|+-+-++.+..|-.+ -...+|++|.. .|+++..|+-. .-|.|+..+ .+.+
T Consensus 381 ~IASaSFDkSVkLW~g~tGk~lasfRGH-v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDw 459 (480)
T KOG0271|consen 381 YIASASFDKSVKLWDGRTGKFLASFRGH-VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDW 459 (480)
T ss_pred EEEEeecccceeeeeCCCcchhhhhhhc-cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEe
Confidence 9999999999999998878888888877 34789999974 46666677631 235677666 5677
Q ss_pred ecCCCeEEeecCCc-eEEEe
Q 005559 294 FYDEPLVLIPECDG-VRILS 312 (691)
Q Consensus 294 ~~d~~~~l~~E~DG-vRIit 312 (691)
.+|+.-+...--|- +|+|+
T Consensus 460 spDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 460 SPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCceeecCCCceEEEeec
Confidence 77777777776665 66654
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.68 E-value=1.7e-14 Score=141.59 Aligned_cols=254 Identities=14% Similarity=0.157 Sum_probs=181.3
Q ss_pred ccccccEEEecccccccCCCCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCc--eeEEEEecCC
Q 005559 10 WQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGV--LISETVWKNP 86 (691)
Q Consensus 10 W~~l~~~~yr~~~~y~~~w~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~--ll~si~~~~~ 86 (691)
|+.+..+-||-.. | -|.......+.|+++.+|.+. .+.|++|+. +++ ++.++..|.
T Consensus 25 Wqa~tG~C~rTiq-h------~dsqVNrLeiTpdk~~LAaa~-------------~qhvRlyD~~S~np~Pv~t~e~h~- 83 (311)
T KOG0315|consen 25 WQALTGICSRTIQ-H------PDSQVNRLEITPDKKDLAAAG-------------NQHVRLYDLNSNNPNPVATFEGHT- 83 (311)
T ss_pred eehhcCeEEEEEe-c------CccceeeEEEcCCcchhhhcc-------------CCeeEEEEccCCCCCceeEEeccC-
Confidence 7777777776522 1 256777899999999999985 688999995 444 689999887
Q ss_pred CCCEEEEEecCCCeE-EEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecC--CeEEEEecCCCc
Q 005559 87 GGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFATM 163 (691)
Q Consensus 87 ~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~--~~~~~v~n~~~~ 163 (691)
.+|..+||-.+|+. .+.++||++||||+..--.+-.|.. ...|.++.+.++---++.++ +++ .+|++.+.
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-----~spVn~vvlhpnQteLis~dqsg~i-rvWDl~~~ 156 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-----NSPVNTVVLHPNQTELISGDQSGNI-RVWDLGEN 156 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-----CCCcceEEecCCcceEEeecCCCcE-EEEEccCC
Confidence 79999999999995 7999999999999964212214443 25688989988654444444 444 45565433
Q ss_pred eEE-E-cCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----------cccCCCeeEEEECCCCCE
Q 005559 164 KVC-E-LARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----------KVDDTLSQKMAVSPNGNF 230 (691)
Q Consensus 164 ~~~-~-l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----------~~~~~~i~~Ia~SpnG~~ 230 (691)
... + +++.. ......+|. +||++.+.+..-|+.|+|+..+.+ +.+.+.+.+..+||++|+
T Consensus 157 ~c~~~liPe~~--~~i~sl~v~-----~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 157 SCTHELIPEDD--TSIQSLTVM-----PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred ccccccCCCCC--cceeeEEEc-----CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence 221 1 23211 224555654 599999999999999999987544 357788999999999999
Q ss_pred EEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCC--ceEeecCCCeEEeecCCc-
Q 005559 231 VACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG- 307 (691)
Q Consensus 231 IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~--~v~f~~d~~~~l~~E~DG- 307 (691)
||+.+.|.+++||++|-- ..+| +.+-|+++. -.-|+-|+..++..+.|+
T Consensus 230 lat~ssdktv~iwn~~~~-~kle---------------------------~~l~gh~rWvWdc~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDF-FKLE---------------------------LVLTGHQRWVWDCAFSADGEYLVTASSDHT 281 (311)
T ss_pred EEeecCCceEEEEecCCc-eeeE---------------------------EEeecCCceEEeeeeccCccEEEecCCCCc
Confidence 999999999999997611 2222 233333332 356777888888889999
Q ss_pred eEEEecCcceeeeccchhh
Q 005559 308 VRILSNSSMEFLQRVPAST 326 (691)
Q Consensus 308 vRIit~~~~efL~~Vp~~~ 326 (691)
+|+|.....+-.+.-+.+.
T Consensus 282 ~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 282 ARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred eeecccccCceeeecCCcc
Confidence 9999988777666655553
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.66 E-value=1.2e-14 Score=144.89 Aligned_cols=235 Identities=14% Similarity=0.116 Sum_probs=168.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCC-eEEEEEeCCeEEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ-TLICVVQDGTVYRY 113 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de-~Lv~v~~DGtV~ly 113 (691)
..|+++|+|...-..+ .|+++++|+. .|+....+.+|. ..|.+++|++|. ++|+.+.|.|+++|
T Consensus 67 ~dv~~s~dg~~alS~s------------wD~~lrlWDl~~g~~t~~f~GH~--~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 67 SDVVLSSDGNFALSAS------------WDGTLRLWDLATGESTRRFVGHT--KDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred cceEEccCCceEEecc------------ccceEEEEEecCCcEEEEEEecC--CceEEEEecCCCceeecCCCcceeeee
Confidence 3678899888765553 7999999997 568899999998 789999999975 47899999999999
Q ss_pred eCCCCeeccccCCCccccccCeEEEEEeCC--ceEEEecC-CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCC
Q 005559 114 NIHAELIEPNASMGKECFEENVVECVFWGN--GVVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (691)
Q Consensus 114 ~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~--G~vllt~~-~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d 190 (691)
|.-|+..- +...+.+ .+-|..++|+|+ -..++..+ .+.+.+||+.+.++... ..++....-++ .+|||
T Consensus 133 nt~g~ck~-t~~~~~~--~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~---~~gh~~~v~t~---~vSpD 203 (315)
T KOG0279|consen 133 NTLGVCKY-TIHEDSH--REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT---FIGHSGYVNTV---TVSPD 203 (315)
T ss_pred eecccEEE-EEecCCC--cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc---cccccccEEEE---EECCC
Confidence 99988754 4443322 455788899986 55666655 67999999876544321 12122222233 47899
Q ss_pred CCeEEEEEeCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEE
Q 005559 191 GSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIA 266 (691)
Q Consensus 191 ~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~ 266 (691)
|+..+..+.|+.+++||.++.. ..+..+|.+++||||--.||.++..+ |+||+.+-+.++-++..+..++
T Consensus 204 GslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~~g~----- 277 (315)
T KOG0279|consen 204 GSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDGIGP----- 277 (315)
T ss_pred CCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhhhhcccccccc-----
Confidence 9999999999999999998655 46888999999999987788777654 9999988777776665442221
Q ss_pred EecCceEEEEEcCeEEEEcCCCCceEeecCCCeEEeecCCc-eEEEe
Q 005559 267 WCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILS 312 (691)
Q Consensus 267 WCG~davvl~~~~~l~liGp~~~~v~f~~d~~~~l~~E~DG-vRIit 312 (691)
....-+|..-++.|+.|++..+..--|| ||++-
T Consensus 278 -------------s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 278 -------------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred -------------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 0011112222445555666666666776 67653
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.65 E-value=4.7e-15 Score=165.19 Aligned_cols=179 Identities=15% Similarity=0.099 Sum_probs=136.2
Q ss_pred ceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCCe-
Q 005559 76 VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR- 153 (691)
Q Consensus 76 ~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~- 153 (691)
....++.+|+ |+|++..|+|+-+ |++.++|++||+|++.-.-.-..+.+| ...|++++|.|.|.-++|++++
T Consensus 442 ~~~~~L~GH~--GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH----~~PVwdV~F~P~GyYFatas~D~ 515 (707)
T KOG0263|consen 442 GTSRTLYGHS--GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH----LAPVWDVQFAPRGYYFATASHDQ 515 (707)
T ss_pred ceeEEeecCC--CceeeeeecccccceeeccCCcceeeeecccceeEEEecCC----CcceeeEEecCCceEEEecCCCc
Confidence 3445577888 9999999999988 678999999999988643322255566 4679999999999999999864
Q ss_pred EEEEecCCCceEEEc-CCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCC
Q 005559 154 YFCMADFATMKVCEL-ARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPN 227 (691)
Q Consensus 154 ~~~v~n~~~~~~~~l-~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~Spn 227 (691)
.-.+|..+...+-++ ..+ + ++..| | .|.|+....++.+.|.||.+||..... ..|.+||+.++|||+
T Consensus 516 tArLWs~d~~~PlRifagh-l-sDV~c--v---~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGH-L-SDVDC--V---SFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC 588 (707)
T ss_pred eeeeeecccCCchhhhccc-c-cccce--E---EECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC
Confidence 556676553333222 211 1 22333 3 477899999999999999999987433 579999999999999
Q ss_pred CCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEe
Q 005559 228 GNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (691)
Q Consensus 228 G~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC 268 (691)
|++||++++||.|.||+..-++.+.++-.+ .+....|.+|
T Consensus 589 Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS 628 (707)
T KOG0263|consen 589 GRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFS 628 (707)
T ss_pred CceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEe
Confidence 999999999999999998777777666655 4455566654
No 9
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.2e-13 Score=137.17 Aligned_cols=250 Identities=15% Similarity=0.134 Sum_probs=167.9
Q ss_pred CCCEEEEcCC-CCeEEEEecCchhhhhhcccCCCeEEEEcCCC-ceeEEE--E--ecCCCCCEEEEEecCCCeE-EEEEe
Q 005559 34 SRNKVACAPF-GGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISET--V--WKNPGGRLIGMSWSEDQTL-ICVVQ 106 (691)
Q Consensus 34 ~~~~vA~sp~-GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-~ll~si--~--~~~~~~~Iv~~~fs~de~L-v~v~~ 106 (691)
..+.+|..|- |..||..+ .++.|+||+..| .-..-. - .|+ ..|.+++|+|.|++ ++++-
T Consensus 16 r~W~~awhp~~g~ilAscg------------~Dk~vriw~~~~~~s~~ck~vld~~hk--rsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCG------------TDKAVRIWSTSSGDSWTCKTVLDDGHK--RSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred cEEEEEeccCCceEEEeec------------CCceEEEEecCCCCcEEEEEeccccch--heeeeeeecCCCcEEEEeec
Confidence 4678999998 66788775 689999999884 332221 1 244 46999999999995 68999
Q ss_pred CCeEEEE-eCCCCeec-cccCCCccccccCeEEEEEeCCceEEEecCCe--EEEEecCC-CceEEEcCCCCcCCC-CceE
Q 005559 107 DGTVYRY-NIHAELIE-PNASMGKECFEENVVECVFWGNGVVCVTEANR--YFCMADFA-TMKVCELARPEVEEL-PHCV 180 (691)
Q Consensus 107 DGtV~ly-~~~G~~~~-~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~--~~~v~n~~-~~~~~~l~~~~l~~~-~~~w 180 (691)
|+|+-|| +-+|+|.- ..+.+| +++|-.+.++.+|-.++|-+.+ +|.+ -++ +.......- ++++ ...=
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGH----EnEVK~Vaws~sG~~LATCSRDKSVWiW-e~deddEfec~aV--L~~HtqDVK 154 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGH----ENEVKCVAWSASGNYLATCSRDKSVWIW-EIDEDDEFECIAV--LQEHTQDVK 154 (312)
T ss_pred cceEEEeecCCCceeEEeeeecc----ccceeEEEEcCCCCEEEEeeCCCeEEEE-EecCCCcEEEEee--ecccccccc
Confidence 9999999 66788732 256666 6889999999999999987753 3332 222 111111110 1111 0000
Q ss_pred EEecCCcCCCCCeEEEEEeCCeEEEEecC-Cc----c---cccCCCeeEEEECCCCCEEEEEeeCCeEEEEe--cCCCCc
Q 005559 181 AVIEPKYTMTGSVEVLIGTDAGILMLDED-GV----Q---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN--TNFSSP 250 (691)
Q Consensus 181 ~vi~~~~S~d~~~~vl~s~d~ti~l~d~~-~~----~---~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s--sd~~~~ 250 (691)
.| .+.|+..+++..++|+||++|... +- . ..+.+.|..++|+|+|..+++.++|+++.||. ++....
T Consensus 155 ~V---~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~ 231 (312)
T KOG0645|consen 155 HV---IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGM 231 (312)
T ss_pred EE---EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchh
Confidence 11 255788899999999999999876 32 1 45667899999999999999999999999997 443322
Q ss_pred eeeccCCCCCCCCeEEEe--------cCceEEEEEcC------eEE----EEc-CCCC--ceEeecCCC-eEEeecCCc-
Q 005559 251 VIDESCESALPPEQIAWC--------GMDSVLLYWND------MLV----MVA-PQAE--PVQYFYDEP-LVLIPECDG- 307 (691)
Q Consensus 251 l~e~d~~~~~~p~q~~WC--------G~davvl~~~~------~l~----liG-p~~~--~v~f~~d~~-~~l~~E~DG- 307 (691)
. +.....+.|| |+++++++-+. ... ..| |..+ +|.|.+..+ ..+...-||
T Consensus 232 ~-------sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 232 H-------SRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred c-------ccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence 1 3355678998 67777765432 111 122 2222 788887544 445555689
Q ss_pred eEEEecC
Q 005559 308 VRILSNS 314 (691)
Q Consensus 308 vRIit~~ 314 (691)
+|+|...
T Consensus 305 v~~W~l~ 311 (312)
T KOG0645|consen 305 VNFWELE 311 (312)
T ss_pred EEEEEec
Confidence 9998643
No 10
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.61 E-value=6.4e-13 Score=134.96 Aligned_cols=250 Identities=16% Similarity=0.179 Sum_probs=169.8
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC-CceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-G~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~l 112 (691)
...++++|+|..+|+.. .++.|.+|+.. |+.+..+..+. ..+..+.|+++++ +++++.||++++
T Consensus 12 i~~~~~~~~~~~l~~~~------------~~g~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 12 VTCVAFSPDGKLLATGS------------GDGTIKVWDLETGELLRTLKGHT--GPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred EEEEEEcCCCCEEEEee------------cCcEEEEEEeeCCCcEEEEecCC--cceeEEEECCCCCEEEEEcCCCeEEE
Confidence 45778999999999885 47899999974 56777777776 6788999999985 678888999999
Q ss_pred EeCCC-CeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCc-eEEEcCCCCcCCCCceEEEecCCcCC
Q 005559 113 YNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTM 189 (691)
Q Consensus 113 y~~~G-~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~-~~~~l~~~~l~~~~~~w~vi~~~~S~ 189 (691)
|++.. +... .+..+ ...|..+.+.++|..+++++ .....+++.... ....+.. +.....++ .+++
T Consensus 78 ~~~~~~~~~~-~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~i~~~---~~~~ 145 (289)
T cd00200 78 WDLETGECVR-TLTGH----TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG----HTDWVNSV---AFSP 145 (289)
T ss_pred EEcCcccceE-EEecc----CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc----CCCcEEEE---EEcC
Confidence 99975 3333 44433 35688888888876666665 555566676533 2333331 11122222 3566
Q ss_pred CCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCe
Q 005559 190 TGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQ 264 (691)
Q Consensus 190 d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q 264 (691)
++..++..+.++.|++|+..... ..+.+++..++++|+|+.+++.+.+|.+.+|+..-.+.+.++..+ ...+..
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~ 224 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH-ENGVNS 224 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc-CCceEE
Confidence 77776666669999999987433 346678999999999999999998999999987655666666433 235667
Q ss_pred EEEecC---------ceEEEEEcC-----eEEEEcCCCC--ceEeecCCCeEEeecCCc-eEEE
Q 005559 265 IAWCGM---------DSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRIL 311 (691)
Q Consensus 265 ~~WCG~---------davvl~~~~-----~l~liGp~~~--~v~f~~d~~~~l~~E~DG-vRIi 311 (691)
+.|..+ |..+..|+- ...+.++.+. .+.|..++..+++...|| ++||
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 777643 333334431 1122233332 456666666777777777 7665
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=1.9e-13 Score=151.26 Aligned_cols=286 Identities=15% Similarity=0.141 Sum_probs=188.8
Q ss_pred CcccccccccccEE------Ee-cccccccCCCCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CC
Q 005559 4 VSVAAEWQLVYNRY------YR-KPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AG 75 (691)
Q Consensus 4 ~~~~~~W~~l~~~~------yr-~~~~y~~~w~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG 75 (691)
-|-+++|..+|-.- |. ..|.|=|.-+.--.+...++.||+|+.||+.. .|+.|+|||. +|
T Consensus 315 ~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~------------eDgKVKvWn~~Sg 382 (893)
T KOG0291|consen 315 FNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA------------EDGKVKVWNTQSG 382 (893)
T ss_pred ecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc------------CCCcEEEEeccCc
Confidence 35578898776522 11 12344343322224566899999999999986 5899999996 89
Q ss_pred ceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecCCe
Q 005559 76 VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR 153 (691)
Q Consensus 76 ~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~ 153 (691)
.=+-|+.-|. ..|.++.|+.+++ +++.+=|||||.||+. +.--+ +|.... ...-.++.+=+.|-++..++.+
T Consensus 383 fC~vTFteHt--s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR-Tft~P~---p~QfscvavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 383 FCFVTFTEHT--SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR-TFTSPE---PIQFSCVAVDPSGELVCAGAQD 456 (893)
T ss_pred eEEEEeccCC--CceEEEEEEecCCEEEEeecCCeEEeeeecccceee-eecCCC---ceeeeEEEEcCCCCEEEeeccc
Confidence 9999999888 7899999999998 6799999999999995 43333 333321 1234455556789998888876
Q ss_pred EE--EEecCCCceEE-EcCCCCcCCCC-ceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----c-ccCCCeeEEEE
Q 005559 154 YF--CMADFATMKVC-ELARPEVEELP-HCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----K-VDDTLSQKMAV 224 (691)
Q Consensus 154 ~~--~v~n~~~~~~~-~l~~~~l~~~~-~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~-~~~~~i~~Ia~ 224 (691)
.| .||++...++. .|+.+ +.| ++. .|+|+|+.++..+.|.||.+|+.=+.. . ....-+..++|
T Consensus 457 ~F~IfvWS~qTGqllDiLsGH---EgPVs~l-----~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsf 528 (893)
T KOG0291|consen 457 SFEIFVWSVQTGQLLDILSGH---EGPVSGL-----SFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSF 528 (893)
T ss_pred eEEEEEEEeecCeeeehhcCC---CCcceee-----EEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEE
Confidence 44 45787755443 33321 113 333 378899999999999999999977652 2 34566899999
Q ss_pred CCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecCCCeEEeec
Q 005559 225 SPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPE 304 (691)
Q Consensus 225 SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d~~~~l~~E 304 (691)
+|+|+-||.+|-||.|-+|+..-.-.....|+..+..+--. .+|.+... +. -.|..=.++.|++|+..+|...
T Consensus 529 rPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~---~~D~~ta~-~s---a~~K~Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 529 RPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK---ETDRITAE-NS---AKGKTFTTICYSADGKCILAGG 601 (893)
T ss_pred cCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc---ccceeehh-hc---ccCCceEEEEEcCCCCEEEecC
Confidence 99999999999999999998753333322332111111000 12222110 00 0011113788999988887655
Q ss_pred C-CceEEEecCcceeeecc
Q 005559 305 C-DGVRILSNSSMEFLQRV 322 (691)
Q Consensus 305 ~-DGvRIit~~~~efL~~V 322 (691)
. --+.|++-...-+|+|.
T Consensus 602 ~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 602 ESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred CcccEEEEECchhheeeeE
Confidence 4 55888887766666653
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.59 E-value=1.4e-14 Score=151.14 Aligned_cols=177 Identities=15% Similarity=0.141 Sum_probs=143.4
Q ss_pred cCCCeEEEEcCCC-ceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEE
Q 005559 63 SALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 63 ~~~~~I~Iys~sG-~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
+.|+++++|..++ .+|..+.+|. .+|..+.|.|+|+ |.+.+-|-|-|+||+. +..+-..-++ ..+|.++.
T Consensus 238 s~Dgtvklw~~~~e~~l~~l~gH~--~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH-----s~~v~~ia 310 (459)
T KOG0272|consen 238 SADGTVKLWKLSQETPLQDLEGHL--ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH-----SKGVFSIA 310 (459)
T ss_pred ccCCceeeeccCCCcchhhhhcch--hhheeeeecCCCceeeecccccchhhcccccchhhHhhccc-----ccccceeE
Confidence 3799999999988 8999999998 8999999999999 6799999999999995 3322213333 46799999
Q ss_pred EeCCceEEEecCCe-EEEEecCCCceEEEc-CCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----
Q 005559 140 FWGNGVVCVTEANR-YFCMADFATMKVCEL-ARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----- 212 (691)
Q Consensus 140 ~~~~G~vllt~~~~-~~~v~n~~~~~~~~l-~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----- 212 (691)
|.++|-+++|++.+ +-.||++...+...+ .. +......| +|||+|..+++.+.|+|..+||.....
T Consensus 311 f~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g----H~k~I~~V---~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 311 FQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG----HIKEILSV---AFSPNGYHLATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred ecCCCceeeccCccchhheeecccCcEEEEecc----cccceeeE---eECCCceEEeecCCCCcEEEeeecccccceec
Confidence 99999999998864 667888775554433 21 12334444 899999999999999999999998665
Q ss_pred cccCCCeeEEEECC-CCCEEEEEeeCCeEEEEecCCCCceee
Q 005559 213 KVDDTLSQKMAVSP-NGNFVACFTHDGRLVVNNTNFSSPVID 253 (691)
Q Consensus 213 ~~~~~~i~~Ia~Sp-nG~~IAl~t~dg~i~I~ssd~~~~l~e 253 (691)
..|.+-|++|.++| .|++|++.+.|+++.||++.--+.+..
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks 425 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS 425 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchh
Confidence 56888899999999 889999999999999999864444433
No 13
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.58 E-value=2.4e-13 Score=152.76 Aligned_cols=255 Identities=19% Similarity=0.205 Sum_probs=190.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCc--eeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCe
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGV--LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~--ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGt 109 (691)
+...+.+||+|..+|... .+++|++|.. .++ ++.++..|. ..|.++.|+||++ +++++.|++
T Consensus 161 sv~~~~fs~~g~~l~~~~------------~~~~i~~~~~~~~~~~~~~~l~~h~--~~v~~~~fs~d~~~l~s~s~D~t 226 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAAS------------SDGLIRIWKLEGIKSNLLRELSGHT--RGVSDVAFSPDGSYLLSGSDDKT 226 (456)
T ss_pred ceEEEEEcCCCCeEEEcc------------CCCcEEEeecccccchhhccccccc--cceeeeEECCCCcEEEEecCCce
Confidence 445689999999988774 7899999998 455 677777777 6799999999996 678999999
Q ss_pred EEEEeC-CC-CeeccccCCCccccccCeEEEEEeCCceEEEecCC-eEEEEecCCC-ceEEEcCCCCcCCCCceEEEecC
Q 005559 110 VYRYNI-HA-ELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFAT-MKVCELARPEVEELPHCVAVIEP 185 (691)
Q Consensus 110 V~ly~~-~G-~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~-~~~~~l~~~~l~~~~~~w~vi~~ 185 (691)
+|+|+. .+ ...+ ++..| ...|..+.|.+.|..+++++. ..+.+|++.. .....++. +....-++
T Consensus 227 iriwd~~~~~~~~~-~l~gH----~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~----hs~~is~~--- 294 (456)
T KOG0266|consen 227 LRIWDLKDDGRNLK-TLKGH----STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG----HSDGISGL--- 294 (456)
T ss_pred EEEeeccCCCeEEE-EecCC----CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec----cCCceEEE---
Confidence 999999 43 4556 66666 577999999999977777764 5888888875 33444442 22222223
Q ss_pred CcCCCCCeEEEEEeCCeEEEEecCCcc-------c-ccCC-CeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccC
Q 005559 186 KYTMTGSVEVLIGTDAGILMLDEDGVQ-------K-VDDT-LSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (691)
Q Consensus 186 ~~S~d~~~~vl~s~d~ti~l~d~~~~~-------~-~~~~-~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~ 256 (691)
.|+++|+.++..+.|++|.+||..... . .... +++.+.|||||+++...+.|+++.+|+..-.....++..
T Consensus 295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 295 AFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred EECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 588999999999999999999987333 1 1222 799999999999999999999999998776777777765
Q ss_pred CCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecCCCeEEeecCCc-eEEEecCcceeeeccchh-hhhhcccCC
Q 005559 257 ESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPAS-TEQIFAIGS 334 (691)
Q Consensus 257 ~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~-~~~If~igS 334 (691)
+... .+|....+. ...+..+++...|| |.+|.....+-++++..+ ...+..+..
T Consensus 375 ~~~~-----~~~~~~~~~-------------------~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 375 HSNL-----VRCIFSPTL-------------------STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSS 430 (456)
T ss_pred cCCc-----ceeEecccc-------------------cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceecccc
Confidence 5321 144332211 22456677888898 999999999999999999 555555554
Q ss_pred CChh
Q 005559 335 TSPA 338 (691)
Q Consensus 335 ~~Pg 338 (691)
....
T Consensus 431 ~~~~ 434 (456)
T KOG0266|consen 431 HPTE 434 (456)
T ss_pred CCCc
Confidence 4333
No 14
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=3.7e-14 Score=146.33 Aligned_cols=273 Identities=13% Similarity=0.072 Sum_probs=205.7
Q ss_pred CCCeEEEEcCCCc--------eeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCeeccccCCCccccccC
Q 005559 64 ALRKLRIFNSAGV--------LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEEN 134 (691)
Q Consensus 64 ~~~~I~Iys~sG~--------ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~ 134 (691)
.+....||.+.-. =-++|.+|. +.|+++.|+|++. |++++.|.|||+||+.-+-..++...| ..-
T Consensus 86 e~~l~lvyqpqavfrvrpvtrCssS~~GH~--e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH----~~W 159 (480)
T KOG0271|consen 86 EDVLTLVYQPQAVFRVRPVTRCSSSIAGHG--EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH----KNW 159 (480)
T ss_pred hheeeEEeccchhhcccccceeccccCCCC--CcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCC----ccE
Confidence 3455556665442 135678888 8999999999987 789999999999999866555566666 567
Q ss_pred eEEEEEeCCceEEEecCC-eEEEEecCCC--ceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCc
Q 005559 135 VVECVFWGNGVVCVTEAN-RYFCMADFAT--MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV 211 (691)
Q Consensus 135 V~~~~~~~~G~vllt~~~-~~~~v~n~~~--~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~ 211 (691)
|..+..+|+|..++++.. .-+.+||-.. +.-+.|+... ..+.+.+.=|-+-.|.....+..+.||++.+||....
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~--K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~ 237 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHK--KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG 237 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcc--cceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence 888888899999999884 4667777432 2222232110 0133334434456677778888889999999999974
Q ss_pred c-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCC------------------------CC---
Q 005559 212 Q-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE------------------------SA--- 259 (691)
Q Consensus 212 ~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~------------------------~~--- 259 (691)
. ..|..+|+.|.+--+| +|++++.|+||++|...=+....++..+ ..
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred eEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 3 5688999999999898 9999999999999976533332222211 01
Q ss_pred -----------------CCCCeEEEecCceEEEEEcC------eEEEEcCCCC--ceEeecCCCeEEeecCCc-eEEEec
Q 005559 260 -----------------LPPEQIAWCGMDSVLLYWND------MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSN 313 (691)
Q Consensus 260 -----------------~~p~q~~WCG~davvl~~~~------~l~liGp~~~--~v~f~~d~~~~l~~E~DG-vRIit~ 313 (691)
..|..|+=+.+|-.+..|+. .-.|-||+.- .|.|++|+..+.....|- ||+|..
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 12235888889999999984 2379999885 899999999999999997 999999
Q ss_pred CcceeeeccchhhhhhcccCCCChhhHHHHHH
Q 005559 314 SSMEFLQRVPASTEQIFAIGSTSPAALLYDAL 345 (691)
Q Consensus 314 ~~~efL~~Vp~~~~~If~igS~~Pga~L~~A~ 345 (691)
...+||...-.|...|+.|.=++++.+|+.++
T Consensus 397 ~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S 428 (480)
T KOG0271|consen 397 RTGKFLASFRGHVAAVYQVAWSADSRLLVSGS 428 (480)
T ss_pred CCcchhhhhhhccceeEEEEeccCccEEEEcC
Confidence 99999999999999999998888888877765
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.56 E-value=3.9e-13 Score=142.18 Aligned_cols=211 Identities=16% Similarity=0.165 Sum_probs=154.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEe
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN 114 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~ 114 (691)
..++-+.+|..+|+.. .++.++||+..|.++.++.-|+ |+|.++.|+..|. +++.+-|||..+||
T Consensus 239 T~L~Wn~~G~~LatG~------------~~G~~riw~~~G~l~~tl~~Hk--gPI~slKWnk~G~yilS~~vD~ttilwd 304 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGS------------EDGEARIWNKDGNLISTLGQHK--GPIFSLKWNKKGTYILSGGVDGTTILWD 304 (524)
T ss_pred ceEEecCCCCeEEEee------------cCcEEEEEecCchhhhhhhccC--CceEEEEEcCCCCEEEeccCCccEEEEe
Confidence 4678888999999885 7999999999999999999999 9999999999987 67899999999998
Q ss_pred C-CCCee-ccccCCCc--cc---------------------------------cccCeEEEEEeCCceEEEecCCe-EEE
Q 005559 115 I-HAELI-EPNASMGK--EC---------------------------------FEENVVECVFWGNGVVCVTEANR-YFC 156 (691)
Q Consensus 115 ~-~G~~~-~~sl~~~~--~~---------------------------------~~~~V~~~~~~~~G~vllt~~~~-~~~ 156 (691)
. .|+.. ++.|.... ++ -.++|...++.+.|.+++|.+.+ ...
T Consensus 305 ~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 305 AHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred ccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeE
Confidence 7 46542 23322100 00 14556677777899999997754 666
Q ss_pred EecCCCc-eEEEcCCCC-------cC-CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEE
Q 005559 157 MADFATM-KVCELARPE-------VE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKM 222 (691)
Q Consensus 157 v~n~~~~-~~~~l~~~~-------l~-~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~I 222 (691)
+|+.... -...|.... .. ..|-.|+ ...+.+++.++.|+||.+||...-. .-|..||..+
T Consensus 385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n------~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysv 458 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSN------PNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSV 458 (524)
T ss_pred eeecCCCcchhhhhhhccceeeEeecCCCCccCC------CcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEE
Confidence 7764311 111111000 00 1122222 2356788889999999999987444 4688999999
Q ss_pred EECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEe
Q 005559 223 AVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (691)
Q Consensus 223 a~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC 268 (691)
+|||||+++|+++.||.+.||+....+.+.+|..+. -...+.|.
T Consensus 459 afS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~--~Ifel~Wn 502 (524)
T KOG0273|consen 459 AFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG--GIFELCWN 502 (524)
T ss_pred EecCCCcEEEecCCCCeeEeccccchheeEeecCCC--eEEEEEEc
Confidence 999999999999999999999998888888776432 35678886
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=2.7e-12 Score=142.21 Aligned_cols=187 Identities=18% Similarity=0.199 Sum_probs=140.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC-CceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRY 113 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-G~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly 113 (691)
..+++..-|..||+... .-+.+-||.-. -.-+-...+|. .+|.++.+||||++ +++.+||+|++|
T Consensus 311 ~t~~~N~tGDWiA~g~~-----------klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCS-----------KLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred eEEEecccCCEEEEcCC-----------ccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEE
Confidence 35566666788887751 23678888864 34466667777 78999999999997 589999999999
Q ss_pred eCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCC-eEEEEecCCCce-EEEcCCCCcCCCCceEEEecCCcCCCC
Q 005559 114 NIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTG 191 (691)
Q Consensus 114 ~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~~~-~~~l~~~~l~~~~~~w~vi~~~~S~d~ 191 (691)
|.+.-+--.+|..| ..+|..++|..+|.++++++- ..+..|++...+ .+++..|.- ..-+|.+| .|+|
T Consensus 378 n~~SgfC~vTFteH----ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p-~Qfscvav-----D~sG 447 (893)
T KOG0291|consen 378 NTQSGFCFVTFTEH----TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP-IQFSCVAV-----DPSG 447 (893)
T ss_pred eccCceEEEEeccC----CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc-eeeeEEEE-----cCCC
Confidence 98654433388877 678999999999999999884 366667765333 334443211 22456555 2578
Q ss_pred CeEEEEEeCC-eEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 192 SVEVLIGTDA-GILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 192 ~~~vl~s~d~-ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
.+.+..+.|. .|++|+...-+ ..|.|||..++|||.|..||+++-|.||++|+-
T Consensus 448 elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEe
Confidence 8888888877 79999987443 679999999999999999999999999999964
No 17
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.50 E-value=7.7e-12 Score=126.99 Aligned_cols=208 Identities=16% Similarity=0.198 Sum_probs=152.7
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC-ceeEEEEecCCCCCEEEEEecCCCeEEEEEe-CCeEEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQTLICVVQ-DGTVYRY 113 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~-DGtV~ly 113 (691)
..+.++|+|..+++.. .++.|++|+..+ +.+..+..+. +.|.++.|+++++++++.. ||.+++|
T Consensus 55 ~~~~~~~~~~~l~~~~------------~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 55 RDVAASADGTYLASGS------------SDKTIRLWDLETGECVRTLTGHT--SYVSSVAFSPDGRILSSSSRDKTIKVW 120 (289)
T ss_pred eEEEECCCCCEEEEEc------------CCCeEEEEEcCcccceEEEeccC--CcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence 3678888888888775 579999999864 7888888776 7899999999988876666 9999999
Q ss_pred eCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCce-EEEcCCCCcCCCCceEEEecCCcCCC
Q 005559 114 NIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMT 190 (691)
Q Consensus 114 ~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~-~~~l~~~~l~~~~~~w~vi~~~~S~d 190 (691)
++. ++... .+..+ ...|..+.+.++|..++++. .....+++....+ ...+.. +.....++ .++++
T Consensus 121 ~~~~~~~~~-~~~~~----~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~----~~~~i~~~---~~~~~ 188 (289)
T cd00200 121 DVETGKCLT-TLRGH----TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG----HTGEVNSV---AFSPD 188 (289)
T ss_pred ECCCcEEEE-EeccC----CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec----CccccceE---EECCC
Confidence 997 55544 44433 45688989988787777765 5555666665332 222221 11122233 46678
Q ss_pred CCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeE
Q 005559 191 GSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQI 265 (691)
Q Consensus 191 ~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~ 265 (691)
+..+++.+.++.|.+|+..... ..+.+++..++++|++++++..+.+|++.+|+.+-.+....+..+ ...+..+
T Consensus 189 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~ 267 (289)
T cd00200 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSL 267 (289)
T ss_pred cCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEE
Confidence 8888888889999999987433 256779999999999999999888999999987655565555533 3456788
Q ss_pred EEecC
Q 005559 266 AWCGM 270 (691)
Q Consensus 266 ~WCG~ 270 (691)
.|+.+
T Consensus 268 ~~~~~ 272 (289)
T cd00200 268 AWSPD 272 (289)
T ss_pred EECCC
Confidence 88765
No 18
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.49 E-value=8.9e-12 Score=149.64 Aligned_cols=219 Identities=16% Similarity=0.214 Sum_probs=148.3
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecC-CCe-EEEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEE
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSE-DQT-LICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~-de~-Lv~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
.+++|+||+. .|+.+.++..|. +.|.++.|+| ++. |++++.||+|++||+. |+... ++..+ ..|..+.
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H~--~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~-~~~~~-----~~v~~v~ 624 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEHE--KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG-TIKTK-----ANICCVQ 624 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCCC--CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE-EEecC-----CCeEEEE
Confidence 6899999996 588999999888 8999999996 665 6789999999999985 55544 44332 3577878
Q ss_pred Ee-CCceEEEecCC-eEEEEecCCCce--EEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCc----
Q 005559 140 FW-GNGVVCVTEAN-RYFCMADFATMK--VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV---- 211 (691)
Q Consensus 140 ~~-~~G~vllt~~~-~~~~v~n~~~~~--~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~---- 211 (691)
+. ++|..+++++. ..+.+|+....+ ...+.. +....+.+ .|+ ++..++..+.|++|.+||....
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~----h~~~V~~v---~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG----HSKTVSYV---RFV-DSSTLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC----CCCCEEEE---EEe-CCCEEEEEECCCEEEEEeCCCCcccc
Confidence 75 47888877663 466777765432 122221 22233333 354 6788899999999999998621
Q ss_pred ---c----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEE
Q 005559 212 ---Q----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMV 284 (691)
Q Consensus 212 ---~----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~li 284 (691)
. ..+...+..+++||+|++||+++.||+++||+......+..|..........+...+....|
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V---------- 766 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFI---------- 766 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEE----------
Confidence 1 34667788999999999999999999999998765554444432211111111111111101
Q ss_pred cCCCCceEeecCCCeEEeecCCc-eEEEe
Q 005559 285 APQAEPVQYFYDEPLVLIPECDG-VRILS 312 (691)
Q Consensus 285 Gp~~~~v~f~~d~~~~l~~E~DG-vRIit 312 (691)
..+.|..++..++....|| ||||.
T Consensus 767 ----~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 767 ----SSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred ----EEEEEcCCCCeEEEecCCCcEEEEe
Confidence 1466666777777777888 88874
No 19
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=1.2e-12 Score=144.90 Aligned_cols=242 Identities=15% Similarity=0.203 Sum_probs=182.4
Q ss_pred CCCeEEEEcCC-CceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEE
Q 005559 64 ALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVF 140 (691)
Q Consensus 64 ~~~~I~Iys~s-G~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~ 140 (691)
..+.|+||+.+ ++-|.|+.- +.+++-.|-|.+.. +++..+|.+.+||+ .+.+.+ +...| ++.|+.+..
T Consensus 392 a~~SikiWn~~t~kciRTi~~----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E-ti~AH----dgaIWsi~~ 462 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITC----GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE-TIRAH----DGAIWSISL 462 (888)
T ss_pred CCCcEEEEEccCcceeEEecc----ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh-hhhcc----ccceeeeee
Confidence 56899999986 999999986 57999999998886 57999999999999 466666 66666 678999999
Q ss_pred eCCceEEEecCC-eEEEEecCC------CceEEEcC--CC-CcCCCC-ceEEEecCCcCCCCCeEEEEEeCCeEEEEecC
Q 005559 141 WGNGVVCVTEAN-RYFCMADFA------TMKVCELA--RP-EVEELP-HCVAVIEPKYTMTGSVEVLIGTDAGILMLDED 209 (691)
Q Consensus 141 ~~~G~vllt~~~-~~~~v~n~~------~~~~~~l~--~~-~l~~~~-~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~ 209 (691)
.++|.-++|++. +.+.+|++. +.+.+.|+ +. .+ +.+ ...+| .+||||...+..=-|+||.++-.+
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v---~~Spdgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCV---SVSPDGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEE---EEcCCCcEEEEEeccCeEEEEEec
Confidence 998888888774 466666653 22212121 10 01 112 22333 689999999888889999999888
Q ss_pred Ccc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEE
Q 005559 210 GVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMV 284 (691)
Q Consensus 210 ~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~li 284 (691)
... =+|.-||..|-+|||++.|++.+.|.+++||-.||+++...|-.| +|+|+
T Consensus 539 tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH------------dDSvm---------- 596 (888)
T KOG0306|consen 539 TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH------------DDSVM---------- 596 (888)
T ss_pred ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc------------cCcee----------
Confidence 665 258899999999999999999999999999999999886554333 34444
Q ss_pred cCCCCceEeecCCCeEEeecCCc-eEEEecCcceeeeccchhhhhhcccCCCChhhHHHHHH
Q 005559 285 APQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDAL 345 (691)
Q Consensus 285 Gp~~~~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~~~~If~igS~~Pga~L~~A~ 345 (691)
+|.|-+....++...-|| +|=|..++.+.+|+.+.|...|+...-.+.|..++.++
T Consensus 597 -----~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 597 -----SVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred -----EEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc
Confidence 466666666667777788 88888888888888888888888776666666666554
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.49 E-value=2.4e-11 Score=130.29 Aligned_cols=277 Identities=19% Similarity=0.229 Sum_probs=188.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEE---ecCCCCCEEEEEecCCCe-EEEEEeCCeE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETV---WKNPGGRLIGMSWSEDQT-LICVVQDGTV 110 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~---~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV 110 (691)
+.|.+||+|...|.++ .|++|-||+. +|+++..+. .|+ |.|.++.|+||+. +++++.|.++
T Consensus 194 ~~VRysPDG~~Fat~g------------sDgki~iyDGktge~vg~l~~~~aHk--GsIfalsWsPDs~~~~T~SaDkt~ 259 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAG------------SDGKIYIYDGKTGEKVGELEDSDAHK--GSIFALSWSPDSTQFLTVSADKTI 259 (603)
T ss_pred eeEEECCCCCeEEEec------------CCccEEEEcCCCccEEEEecCCCCcc--ccEEEEEECCCCceEEEecCCceE
Confidence 4789999999999996 7999999997 899999998 677 8999999999976 7899999999
Q ss_pred EEEeCC-CCeeccccCCCccccccCeEEEEEeCCc-eEEEecCCeEEEEecCCCceEEEcCCCCcCCC--CceEEEecCC
Q 005559 111 YRYNIH-AELIEPNASMGKECFEENVVECVFWGNG-VVCVTEANRYFCMADFATMKVCELARPEVEEL--PHCVAVIEPK 186 (691)
Q Consensus 111 ~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G-~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~--~~~w~vi~~~ 186 (691)
|+||.. +++.+ ++.++... ++.-+. .+|.++ ++-++.++.+-+++--+..-+..+.. +. ..+.++
T Consensus 260 KIWdVs~~slv~-t~~~~~~v-~dqqvG-~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G----HnK~ITaLtv---- 328 (603)
T KOG0318|consen 260 KIWDVSTNSLVS-TWPMGSTV-EDQQVG-CLWQKDHLITVSLSGTINYLNPSDPSVLKVISG----HNKSITALTV---- 328 (603)
T ss_pred EEEEeeccceEE-EeecCCch-hceEEE-EEEeCCeEEEEEcCcEEEEecccCCChhheecc----cccceeEEEE----
Confidence 999995 55666 66665332 233333 458755 44455556544443222112222321 22 344444
Q ss_pred cCCCCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC---CCCceeeccCC
Q 005559 187 YTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN---FSSPVIDESCE 257 (691)
Q Consensus 187 ~S~d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd---~~~~l~e~d~~ 257 (691)
+++|.++...++||.|.-|+..... ..|...|..|+.+-+|. +-+.+.|.++++.+-. +...- -++..
T Consensus 329 -~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~-~~~lg 405 (603)
T KOG0318|consen 329 -SPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE-VVKLG 405 (603)
T ss_pred -cCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc-eeecC
Confidence 5799999999999999999987443 34778899999999885 5555678899988642 22110 12333
Q ss_pred CCCCCCeEEEecCc-eEEEEEcCeEEEE-cCCC----------CceEeecCCCeEEeecCCc-eEEEecCcceeeec--c
Q 005559 258 SALPPEQIAWCGMD-SVLLYWNDMLVMV-APQA----------EPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQR--V 322 (691)
Q Consensus 258 ~~~~p~q~~WCG~d-avvl~~~~~l~li-Gp~~----------~~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~--V 322 (691)
..|..++=..++ +.++.....+.+. +..+ ..+-..+++..+++.-.|| |+|++-+..++... .
T Consensus 406 --~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~ 483 (603)
T KOG0318|consen 406 --SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL 483 (603)
T ss_pred --CCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee
Confidence 367766554442 5555555544433 2322 2344556678889999999 99999887555332 2
Q ss_pred chhhhhhcccCCCChhhHHH
Q 005559 323 PASTEQIFAIGSTSPAALLY 342 (691)
Q Consensus 323 p~~~~~If~igS~~Pga~L~ 342 (691)
-++...|-.|.-++.+++|.
T Consensus 484 ~~h~a~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 484 LEHRAAITDVAYSPDGAYLA 503 (603)
T ss_pred ecccCCceEEEECCCCcEEE
Confidence 34556677787788888775
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.48 E-value=5e-12 Score=142.12 Aligned_cols=201 Identities=16% Similarity=0.172 Sum_probs=158.9
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-C-CceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCC
Q 005559 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-A-GVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDG 108 (691)
Q Consensus 32 ~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-s-G~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DG 108 (691)
......+++||+|..++... .|.+|+||+. + |..+.++..|. ..|.++.|+|++++ ++++.||
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s------------~D~tiriwd~~~~~~~~~~l~gH~--~~v~~~~f~p~g~~i~Sgs~D~ 268 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGS------------DDKTLRIWDLKDDGRNLKTLKGHS--TYVTSVAFSPDGNLLVSGSDDG 268 (456)
T ss_pred ccceeeeEECCCCcEEEEec------------CCceEEEeeccCCCeEEEEecCCC--CceEEEEecCCCCEEEEecCCC
Confidence 34567899999999888875 6899999998 4 48899999998 89999999999975 6899999
Q ss_pred eEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceE---EEcCCCCcCCCC-ceEEE
Q 005559 109 TVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKV---CELARPEVEELP-HCVAV 182 (691)
Q Consensus 109 tV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~---~~l~~~~l~~~~-~~w~v 182 (691)
+||+||+. |+..+ .+..| ..+|..+.|.++|-.+++++ ..+..+||...... ..+... ..+ ..+.+
T Consensus 269 tvriWd~~~~~~~~-~l~~h----s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~ 340 (456)
T KOG0266|consen 269 TVRIWDVRTGECVR-KLKGH----SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA---ENSAPVTSV 340 (456)
T ss_pred cEEEEeccCCeEEE-eeecc----CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCC---CCCCceeEE
Confidence 99999996 67777 67666 57899999999999999987 45888999886653 233221 224 44555
Q ss_pred ecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----ccc-CC--CeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeec
Q 005559 183 IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVD-DT--LSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDE 254 (691)
Q Consensus 183 i~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~-~~--~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~ 254 (691)
.||+++..++....|+++.+|+..... ..+ .+ .+.....+++|+++.+++.|+.|.+|+..-...+..+
T Consensus 341 ---~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l 417 (456)
T KOG0266|consen 341 ---QFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL 417 (456)
T ss_pred ---EECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh
Confidence 699999999999999999999998433 222 22 5667777999999999999999999987655555444
Q ss_pred cCC
Q 005559 255 SCE 257 (691)
Q Consensus 255 d~~ 257 (691)
..+
T Consensus 418 ~~h 420 (456)
T KOG0266|consen 418 EGH 420 (456)
T ss_pred cCC
Confidence 433
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.46 E-value=6.5e-13 Score=138.33 Aligned_cols=254 Identities=16% Similarity=0.184 Sum_probs=185.7
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEe-cCCCCCEEEEEecCCCe-EEEEEeCCeEEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVW-KNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~-~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~l 112 (691)
...|.-.|.|.-|-+.. .-+...+|+..+--..+|.- |. ..|.+|.||++|. +|++..+|.|++
T Consensus 99 V~~v~WtPeGRRLltgs------------~SGEFtLWNg~~fnFEtilQaHD--s~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGS------------QSGEFTLWNGTSFNFETILQAHD--SPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred eeeEEEcCCCceeEeec------------ccccEEEecCceeeHHHHhhhhc--ccceeEEEccCCCEEEEcCCCceEEe
Confidence 34556667776666554 45778888875544444432 44 5799999999998 688999999999
Q ss_pred EeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceEE-EcCCCCcCCCCceEEEecCCcCCC
Q 005559 113 YNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKVC-ELARPEVEELPHCVAVIEPKYTMT 190 (691)
Q Consensus 113 y~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~~-~l~~~~l~~~~~~w~vi~~~~S~d 190 (691)
|.+.-+-.+....++ ...|.+++|+++--.++|.+ .....||++..++.. .|. .+.|.|-..++.|.
T Consensus 165 WqpnmnnVk~~~ahh----~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-------GHgwdVksvdWHP~ 233 (464)
T KOG0284|consen 165 WQPNMNNVKIIQAHH----AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-------GHGWDVKSVDWHPT 233 (464)
T ss_pred cccchhhhHHhhHhh----hhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-------cCCCCcceeccCCc
Confidence 988655555344444 35699999999777777755 568899998755432 223 46777777788899
Q ss_pred CCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeE
Q 005559 191 GSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQI 265 (691)
Q Consensus 191 ~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~ 265 (691)
.+.++..+.|+.|++||..... ..|..-|.++.|+|||.+|++++.|..++++++..-+.+..|..+ ......+
T Consensus 234 kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H-kkdv~~~ 312 (464)
T KOG0284|consen 234 KGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH-KKDVTSL 312 (464)
T ss_pred cceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc-hhhheee
Confidence 9999999999999999988444 457888999999999999999999999999987533344445544 2355677
Q ss_pred EEe----------cCceEEEEEc----CeEEEEcCCCC----ceEeecCCCeEEeecCCc-eEEEecC
Q 005559 266 AWC----------GMDSVLLYWN----DMLVMVAPQAE----PVQYFYDEPLVLIPECDG-VRILSNS 314 (691)
Q Consensus 266 ~WC----------G~davvl~~~----~~l~liGp~~~----~v~f~~d~~~~l~~E~DG-vRIit~~ 314 (691)
.|. |.|.-+++|. ..+-.+++.-+ ++.|-+=+.+......|- +|.|+..
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 775 7788787874 34555555443 455555577778888887 9999876
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.46 E-value=1.5e-11 Score=123.08 Aligned_cols=191 Identities=12% Similarity=0.107 Sum_probs=146.0
Q ss_pred CCCeEEEEcC------CCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeCC-CCeeccccCCCccccccCe
Q 005559 64 ALRKLRIFNS------AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIH-AELIEPNASMGKECFEENV 135 (691)
Q Consensus 64 ~~~~I~Iys~------sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V 135 (691)
.|.+|-+|.. -|.++..+.+|+ ..|-++.-++|++. ++++.||++|+||+. |+-.+ .|-+| ...|
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHs--H~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~-~f~GH----~~dV 108 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHS--HFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR-RFVGH----TKDV 108 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccc--eEecceEEccCCceEEeccccceEEEEEecCCcEEE-EEEec----CCce
Confidence 5777888853 578899999988 78999999999997 689999999999996 46655 44444 3669
Q ss_pred EEEEEeCCceEEEecCC-eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCC--CCeEEEEEeCCeEEEEecCCcc
Q 005559 136 VECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT--GSVEVLIGTDAGILMLDEDGVQ 212 (691)
Q Consensus 136 ~~~~~~~~G~vllt~~~-~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d--~~~~vl~s~d~ti~l~d~~~~~ 212 (691)
..+.|+++.-.+++++. +...+||.-+...+++.+- . -+.|- -...|||+ ..+++..+.|+||++||.++++
T Consensus 109 lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~---~-~~~WV-scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 109 LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED---S-HREWV-SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred EEEEecCCCceeecCCCcceeeeeeecccEEEEEecC---C-CcCcE-EEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 99999998888888874 5788889877777777531 1 13341 11146776 5677888889999999999998
Q ss_pred -----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEe
Q 005559 213 -----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (691)
Q Consensus 213 -----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC 268 (691)
..|.+.++.|++||||.++|++..||++.+|+-+-++.+..++.. .+...+++.
T Consensus 184 l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~--~~v~sl~fs 242 (315)
T KOG0279|consen 184 LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF--DIVNSLCFS 242 (315)
T ss_pred hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC--CeEeeEEec
Confidence 468889999999999999999999999999988766665444422 234444443
No 24
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.46 E-value=7.8e-12 Score=126.10 Aligned_cols=247 Identities=15% Similarity=0.128 Sum_probs=177.1
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC--ceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTV 110 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG--~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV 110 (691)
..+...+.|+|..+|..+ .|..|-+|+-.| +-.+.+++|+ +.|.++.|+.|+. +++++.|.+|
T Consensus 49 eI~~~~F~P~gs~~aSgG------------~Dr~I~LWnv~gdceN~~~lkgHs--gAVM~l~~~~d~s~i~S~gtDk~v 114 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGG------------SDRAIVLWNVYGDCENFWVLKGHS--GAVMELHGMRDGSHILSCGTDKTV 114 (338)
T ss_pred eEEEEEECCCCCeEeecC------------CcceEEEEeccccccceeeecccc--ceeEeeeeccCCCEEEEecCCceE
Confidence 346889999999999885 799999999655 5688889999 9999999999876 7899999999
Q ss_pred EEEeC-CCCeeccccCCCccccccCeEEEEEeCCceEEEecC--CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCc
Q 005559 111 YRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKY 187 (691)
Q Consensus 111 ~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~--~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~ 187 (691)
+.||. .|+..+ .+..+. .-|..+....-|..++.+. .....+|+.......+... ..-..-+| .|
T Consensus 115 ~~wD~~tG~~~r-k~k~h~----~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----~kyqltAv---~f 182 (338)
T KOG0265|consen 115 RGWDAETGKRIR-KHKGHT----SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----NKYQLTAV---GF 182 (338)
T ss_pred EEEecccceeee-hhcccc----ceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----cceeEEEE---Ee
Confidence 99999 477765 444442 2355555566777666643 4577778765322222210 11122233 46
Q ss_pred CCCCCeEEEEEeCCeEEEEecC---Ccc--cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCC----CCceeeccCCC
Q 005559 188 TMTGSVEVLIGTDAGILMLDED---GVQ--KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNF----SSPVIDESCES 258 (691)
Q Consensus 188 S~d~~~~vl~s~d~ti~l~d~~---~~~--~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~----~~~l~e~d~~~ 258 (691)
..++...+....|+.|++||.. +.. ..|..+|+.|+.||+|.++-+-+.|.++.+|+--. .+.+.-|..+.
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~ 262 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHI 262 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecch
Confidence 6778888888899999999994 322 67999999999999999999999999999997531 23344444333
Q ss_pred CCCCCeEEEe------------cCceEEEEEcC-----eEEEEcCCCC--ceEeecCCCeEEeecCC
Q 005559 259 ALPPEQIAWC------------GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECD 306 (691)
Q Consensus 259 ~~~p~q~~WC------------G~davvl~~~~-----~l~liGp~~~--~v~f~~d~~~~l~~E~D 306 (691)
-.--+.+-|| ..|--+..|+. ..++-|+.|. .+.|.+.+++++.-..|
T Consensus 263 hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 263 HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC
Confidence 3334566677 24555677874 3567788886 78888888888765555
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.46 E-value=5.3e-11 Score=119.72 Aligned_cols=252 Identities=13% Similarity=0.123 Sum_probs=187.6
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEE-EEEeCCeEEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDGTVYRY 113 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv-~v~~DGtV~ly 113 (691)
+.+-.++++..|..++ .|+.+-||+. .++...-|+..+ .+|..-+|+|.++.| |++=|....||
T Consensus 59 ~~~~ws~Dsr~ivSaS------------qDGklIvWDs~TtnK~haipl~s--~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 59 YAMDWSTDSRRIVSAS------------QDGKLIVWDSFTTNKVHAIPLPS--SWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEecCCcCeEEeec------------cCCeEEEEEcccccceeEEecCc--eeEEEEEECCCCCeEEecCcCceeEEE
Confidence 3455667777776664 6788889996 789999999988 899999999999986 89999999999
Q ss_pred eCC-----CCe-eccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCC-ceEEEcCCCCcCCCCceEEEecCC
Q 005559 114 NIH-----AEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFAT-MKVCELARPEVEELPHCVAVIEPK 186 (691)
Q Consensus 114 ~~~-----G~~-~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~-~~~~~l~~~~l~~~~~~w~vi~~~ 186 (691)
++. |.. ....+.+| ..-+..|+|-+++..+..+....-.+|+++. .+...+.. +....+++ +
T Consensus 125 ~ls~~d~~g~~~v~r~l~gH----tgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G----H~gDV~sl---s 193 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGH----TGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG----HTGDVMSL---S 193 (343)
T ss_pred ecccccccccceeeeeecCc----cceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC----CcccEEEE---e
Confidence 875 222 22256666 5668889999988765554455677899884 44555543 22344444 5
Q ss_pred cCC-CCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCC-C
Q 005559 187 YTM-TGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES-A 259 (691)
Q Consensus 187 ~S~-d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~-~ 259 (691)
++| ++.+.|..+.|.+.++||..+.. ..|..-|..|+|-|||.-+|++++|++.++++.--++.+..|.... .
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 667 88999999999999999988554 5688899999999999999999999999988765556665554221 1
Q ss_pred CCCCeEEE--------e-cCceEEEEEcC-----eEEEEcCCCC--ceEeecCCCeEEeecCCc-eEEEe
Q 005559 260 LPPEQIAW--------C-GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILS 312 (691)
Q Consensus 260 ~~p~q~~W--------C-G~davvl~~~~-----~l~liGp~~~--~v~f~~d~~~~l~~E~DG-vRIit 312 (691)
.....+++ + .+|-.+-.|+. .-.|.||.+. .+.-.+|+..+....=|. +|||.
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 22334444 3 56666777874 3578899885 677788888888888887 88874
No 26
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.44 E-value=6.3e-12 Score=126.91 Aligned_cols=256 Identities=16% Similarity=0.169 Sum_probs=181.4
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC------------------C-ceeEEEEecCCCCCEEEEEecC
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA------------------G-VLISETVWKNPGGRLIGMSWSE 97 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s------------------G-~ll~si~~~~~~~~Iv~~~fs~ 97 (691)
.-++||+|.++|+.+ .|..|+|++-. + -.|.++--|. +.|.++.|-|
T Consensus 117 ~aafs~DG~lvATGs------------aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~--devn~l~FHP 182 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGS------------ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV--DEVNDLDFHP 182 (430)
T ss_pred eeeeCCCCcEEEccC------------CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc--Ccccceeecc
Confidence 568999999999875 67888888743 2 2455555555 7899999999
Q ss_pred CCe-EEEEEeCCeEEEEeCCCCeec---cccCCCccccccCeEEEEEeCCceEEEecCCe-EEEEecCCCceEEEcCCCC
Q 005559 98 DQT-LICVVQDGTVYRYNIHAELIE---PNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKVCELARPE 172 (691)
Q Consensus 98 de~-Lv~v~~DGtV~ly~~~G~~~~---~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~-~~~v~n~~~~~~~~l~~~~ 172 (691)
.|. |++.+.|+||++||+.-.-.+ ..|. + -..|..+.|.|.|-.++.+..| +..+.|++..+...-.+|.
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~q---d--~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQ---D--TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhh---c--cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 988 578999999999998632111 1222 1 3458999999999888887764 6666677666665555543
Q ss_pred cCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc------cccC-CCeeEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 173 VEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDD-TLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 173 l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~------~~~~-~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
-++....-+| .||++|++.|+++.||.|++||--... ..|. ..|.+..|+-||++|.+-+.|.++++|..
T Consensus 258 ~qht~ai~~V---~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 258 DQHTGAITQV---RYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred cccccceeEE---EecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeee
Confidence 3222333334 799999999999999999999854332 2343 56999999999999999999999999988
Q ss_pred CCCCceeeccCC----CCCCCCeEEEe-cCce---------EEEEEcC------eEEEEcCCCC--ceEeecCCCeEEee
Q 005559 246 NFSSPVIDESCE----SALPPEQIAWC-GMDS---------VLLYWND------MLVMVAPQAE--PVQYFYDEPLVLIP 303 (691)
Q Consensus 246 d~~~~l~e~d~~----~~~~p~q~~WC-G~da---------vvl~~~~------~l~liGp~~~--~v~f~~d~~~~l~~ 303 (691)
.-++.+.+|..- ...--.|-.+. .+|- -+|.|+. .+.=.||+|. |+.-++.++.++.-
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTc 414 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTC 414 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeee
Confidence 888998888732 11111233333 1121 2577863 3556688885 78888888888777
Q ss_pred cCCc-eEEEecC
Q 005559 304 ECDG-VRILSNS 314 (691)
Q Consensus 304 E~DG-vRIit~~ 314 (691)
..|- +|.|-..
T Consensus 415 sdD~raRFWyrr 426 (430)
T KOG0640|consen 415 SDDFRARFWYRR 426 (430)
T ss_pred cccceeeeeeec
Confidence 7776 8887654
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.44 E-value=1.4e-11 Score=130.45 Aligned_cols=236 Identities=17% Similarity=0.181 Sum_probs=170.9
Q ss_pred CCEEEEEecCCCeE-EEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCc-e
Q 005559 88 GRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATM-K 164 (691)
Q Consensus 88 ~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~-~ 164 (691)
..|.+++|+.+|.+ ++++.||.+|+|+.+|.+.. +|+.| .++|...|..+.|--+++++ .+...+||.... .
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~-tl~~H----kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIS-TLGQH----KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhh-hhhcc----CCceEEEEEcCCCCEEEeccCCccEEEEeccCceE
Confidence 36999999999995 68999999999999999988 88877 67899999888998888877 445666665433 2
Q ss_pred EEEcCCCCcCCCC---ceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEee
Q 005559 165 VCELARPEVEELP---HCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTH 236 (691)
Q Consensus 165 ~~~l~~~~l~~~~---~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~ 236 (691)
...++-. +.| -.|. +.+..+.-+.|+.|+++..++.. ..|.++|..|.+.|.|++||+.++
T Consensus 311 ~q~f~~~---s~~~lDVdW~--------~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd 379 (524)
T KOG0273|consen 311 KQQFEFH---SAPALDVDWQ--------SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD 379 (524)
T ss_pred EEeeeec---cCCccceEEe--------cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC
Confidence 2223211 112 3443 56677888889988888777554 459999999999999999999999
Q ss_pred CCeEEEEecCCCCceeeccCCC-----------------CCCCCeEEEecCceEEEEEcC----eE-EEEcCCCC--ceE
Q 005559 237 DGRLVVNNTNFSSPVIDESCES-----------------ALPPEQIAWCGMDSVLLYWND----ML-VMVAPQAE--PVQ 292 (691)
Q Consensus 237 dg~i~I~ssd~~~~l~e~d~~~-----------------~~~p~q~~WCG~davvl~~~~----~l-~liGp~~~--~v~ 292 (691)
|+|++||+-.=+.....++.++ +..-.-+.||+.|.+|..|+- .+ .|.+|... .+.
T Consensus 380 D~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva 459 (524)
T KOG0273|consen 380 DGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA 459 (524)
T ss_pred CCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE
Confidence 9999999832121111111111 112247889999999999973 12 34345443 899
Q ss_pred eecCCCeEEeecCCc-eEEEecCcceeeeccchhhhhhcccCCCChhhH
Q 005559 293 YFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAAL 340 (691)
Q Consensus 293 f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~~~~If~igS~~Pga~ 340 (691)
|++++...+....|| |-||+....++.+.-.+. .-||.+--...|.+
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~k 507 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDK 507 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCE
Confidence 999999999999999 999999988887765443 34676544444433
No 28
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=2.8e-11 Score=126.37 Aligned_cols=256 Identities=17% Similarity=0.177 Sum_probs=179.9
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEc--CCCc--eeEEEEecCCCCCEEEEEecCCCe-EEEEEeCC
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN--SAGV--LISETVWKNPGGRLIGMSWSEDQT-LICVVQDG 108 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys--~sG~--ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DG 108 (691)
+.+-+.+|++|..+|.++ .+.+.-||. ++++ +..++..|. .+|..+.||||++ |+..+.|-
T Consensus 226 EVWfl~FS~nGkyLAsaS------------kD~Taiiw~v~~d~~~kl~~tlvgh~--~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASAS------------KDSTAIIWIVVYDVHFKLKKTLVGHS--QPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred cEEEEEEcCCCeeEeecc------------CCceEEEEEEecCcceeeeeeeeccc--CceEEEEECCCCCeEEecCchH
Confidence 567899999999999996 456666665 3454 688899998 7899999999987 67677777
Q ss_pred eEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecCC-eEEEEecCCCceEEEcCCCCcCCCCceEEEecCC
Q 005559 109 TVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (691)
Q Consensus 109 tV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~ 186 (691)
.+++||.+ |+... .++.+. ...+..|...|+|+-++|++. +-...|+.++.....-... ..|..|++ .
T Consensus 292 ~~~lwDv~tgd~~~-~y~~~~---~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv---r~~~v~dl---a 361 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRH-LYPSGL---GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV---RDPKVHDL---A 361 (519)
T ss_pred heeeccCCcchhhh-hcccCc---CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc---ccceeEEE---E
Confidence 79999995 77654 555431 355778777799999999884 4566677775532222210 23666666 4
Q ss_pred cCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCc-eeeccCCCCCC
Q 005559 187 YTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP-VIDESCESALP 261 (691)
Q Consensus 187 ~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~-l~e~d~~~~~~ 261 (691)
.++||...+++..|..|.+++..... -....||+++++|-||+++-.--.+..+++|+-. +.+ ...|..+..+
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~- 439 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQG- 439 (519)
T ss_pred EcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecc-hhhHHHHhhccccc-
Confidence 56899999999999999999887555 2467899999999999755544467899999765 333 3455544221
Q ss_pred CCeEEEe------------cCceEEEEEcC-----eEEEEcCCCC--ceEeecCCCeE-EeecCCc-eEEEecCc
Q 005559 262 PEQIAWC------------GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLV-LIPECDG-VRILSNSS 315 (691)
Q Consensus 262 p~q~~WC------------G~davvl~~~~-----~l~liGp~~~--~v~f~~d~~~~-l~~E~DG-vRIit~~~ 315 (691)
-.-+-=| .+|.-|-.|+. ...|-||... .|.|++..+-. .+..=|| ||||....
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 1222223 24556667763 3467788764 78888766555 4555588 99999874
No 29
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.41 E-value=1.9e-10 Score=123.47 Aligned_cols=262 Identities=18% Similarity=0.188 Sum_probs=171.4
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC--cee-EEEEecCCCCCEEEEEecCCCeEEEEEeCCe--
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--VLI-SETVWKNPGGRLIGMSWSEDQTLICVVQDGT-- 109 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG--~ll-~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGt-- 109 (691)
.....+||.|-.||..- ..++|+||+..+ .+| .+++--. |+|.++.|+.|++-+++..+|.
T Consensus 62 vtVAkySPsG~yiASGD------------~sG~vRIWdtt~~~hiLKnef~v~a--G~I~Di~Wd~ds~RI~avGEGrer 127 (603)
T KOG0318|consen 62 VTVAKYSPSGFYIASGD------------VSGKVRIWDTTQKEHILKNEFQVLA--GPIKDISWDFDSKRIAAVGEGRER 127 (603)
T ss_pred eEEEEeCCCceEEeecC------------CcCcEEEEeccCcceeeeeeeeecc--cccccceeCCCCcEEEEEecCccc
Confidence 34677999999999763 579999999866 233 3355444 8999999999998666555553
Q ss_pred ---EEEEeC---CCCeecc--------------------------------------ccCCCccccccCeEEEEEeCCce
Q 005559 110 ---VYRYNI---HAELIEP--------------------------------------NASMGKECFEENVVECVFWGNGV 145 (691)
Q Consensus 110 ---V~ly~~---~G~~~~~--------------------------------------sl~~~~~~~~~~V~~~~~~~~G~ 145 (691)
+..||- -|++.-+ ++..| ..=|.+++++|+|-
T Consensus 128 fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~H----skFV~~VRysPDG~ 203 (603)
T KOG0318|consen 128 FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREH----SKFVNCVRYSPDGS 203 (603)
T ss_pred eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccc----ccceeeEEECCCCC
Confidence 444432 2443211 11112 22367899999998
Q ss_pred EEEecC--CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----------
Q 005559 146 VCVTEA--NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----------- 212 (691)
Q Consensus 146 vllt~~--~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----------- 212 (691)
.++|.+ +.++..+.-.+.++..|.+. ..+..+..++ .+|||++..++++.|.++++||.....
T Consensus 204 ~Fat~gsDgki~iyDGktge~vg~l~~~-~aHkGsIfal---sWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v 279 (603)
T KOG0318|consen 204 RFATAGSDGKIYIYDGKTGEKVGELEDS-DAHKGSIFAL---SWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV 279 (603)
T ss_pred eEEEecCCccEEEEcCCCccEEEEecCC-CCccccEEEE---EECCCCceEEEecCCceEEEEEeeccceEEEeecCCch
Confidence 888744 67888888888888888641 1133566666 799999999999999999999977221
Q ss_pred -------------------------------------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeec-
Q 005559 213 -------------------------------------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDE- 254 (691)
Q Consensus 213 -------------------------------------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~- 254 (691)
..|+.+|+.+++||+|++|-+++.||.|-=|.+.-+..-.-+
T Consensus 280 ~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g 359 (603)
T KOG0318|consen 280 EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG 359 (603)
T ss_pred hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc
Confidence 157788999999999999999999999988876422221111
Q ss_pred cCCCCCCCCeEEEec-CceEEEEEcCeEEEEcCCC-----C-ceEeecCCCeEEeecCCc-eEEEecCc-ceeee
Q 005559 255 SCESALPPEQIAWCG-MDSVLLYWNDMLVMVAPQA-----E-PVQYFYDEPLVLIPECDG-VRILSNSS-MEFLQ 320 (691)
Q Consensus 255 d~~~~~~p~q~~WCG-~davvl~~~~~l~liGp~~-----~-~v~f~~d~~~~l~~E~DG-vRIit~~~-~efL~ 320 (691)
+.+ .....+|.=.+ ++-+-+.|+|.+..+.-.+ + .+++.+ .|..+..-.|| +-|++..+ +-+|+
T Consensus 360 ~~h-~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~-QP~~lav~~d~~~avv~~~~~iv~l~ 432 (603)
T KOG0318|consen 360 KGH-TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS-QPKGLAVLSDGGTAVVACISDIVLLQ 432 (603)
T ss_pred ccc-cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC-CceeEEEcCCCCEEEEEecCcEEEEe
Confidence 112 11334444444 6777889999998883322 2 233332 33344444453 55555433 34444
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.35 E-value=3.2e-11 Score=133.76 Aligned_cols=276 Identities=14% Similarity=0.197 Sum_probs=194.2
Q ss_pred EEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecC-CCe-EEEEEeCCeEEEEe
Q 005559 38 VACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSE-DQT-LICVVQDGTVYRYN 114 (691)
Q Consensus 38 vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~-de~-Lv~v~~DGtV~ly~ 114 (691)
.++...++.+++. .+..|.+|+- .+++.+.|.+.. +.|.+|.|-- +++ |++++..+.+|+|+
T Consensus 288 ~~~~~~~~~l~vt-------------aeQnl~l~d~~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~ 352 (775)
T KOG0319|consen 288 LAIESMSQLLLVT-------------AEQNLFLYDEDELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYT 352 (775)
T ss_pred eeccccCceEEEE-------------ccceEEEEEccccEEehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEe
Confidence 3444555666555 5789999985 789999999988 8999999964 433 78999999999999
Q ss_pred CCCCeeccccCCCccccccCeEEEEEeCCceEEEecCCe-EEEEecCCCc--eEEEcCCCCcCCC-CceEEEecCCcCCC
Q 005559 115 IHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATM--KVCELARPEVEEL-PHCVAVIEPKYTMT 190 (691)
Q Consensus 115 ~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~-~~~v~n~~~~--~~~~l~~~~l~~~-~~~w~vi~~~~S~d 190 (691)
.+|-.-+ .+.+| .+-|.....|.+|..++|.+.+ -+.+|.+++. +.-.+.. .+++ -+.-+| .++..
T Consensus 353 ~~~~~c~-ii~GH----~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~--~~gH~~svgav---a~~~~ 422 (775)
T KOG0319|consen 353 LPTSYCQ-IIPGH----TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQ--ANGHTNSVGAV---AGSKL 422 (775)
T ss_pred cCCCceE-EEeCc----hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhh--hccccccccee---eeccc
Confidence 9876555 66666 4568888899999888887753 4444433211 1111110 0011 111112 12222
Q ss_pred -CCeEEEEEeCCeEEEEecCC-------cc-------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCc---ee
Q 005559 191 -GSVEVLIGTDAGILMLDEDG-------VQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP---VI 252 (691)
Q Consensus 191 -~~~~vl~s~d~ti~l~d~~~-------~~-------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~---l~ 252 (691)
-+..|+++.|.|+++|+... .. ..|...|..++++||.++||++++|.+.+||.-+-.+. +.
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs 502 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS 502 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee
Confidence 24567778899999998886 22 56999999999999999999999999988887551111 11
Q ss_pred ---------eccCCCCCCCCeEEEecCceEEEEEcC-----eEEEEcCCCC--ceEeecCCCeEEeecCCc-eEEEecCc
Q 005559 253 ---------DESCESALPPEQIAWCGMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSS 315 (691)
Q Consensus 253 ---------e~d~~~~~~p~q~~WCG~davvl~~~~-----~l~liGp~~~--~v~f~~d~~~~l~~E~DG-vRIit~~~ 315 (691)
+|... -.-|+=|..|++|..|.- .-.+-||... -+.|.-++..+++...|| +|||+=++
T Consensus 503 GH~RGvw~V~Fs~~----dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 503 GHTRGVWCVSFSKN----DQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred CCccceEEEEeccc----cceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 23211 135677888999998863 2356677776 577877788889999999 99999999
Q ss_pred ceeeeccchhhhhhcccCCCChhhHHH
Q 005559 316 MEFLQRVPASTEQIFAIGSTSPAALLY 342 (691)
Q Consensus 316 ~efL~~Vp~~~~~If~igS~~Pga~L~ 342 (691)
.+=+..+-.|...|+...-++-+.+.+
T Consensus 579 ~eC~~tlD~H~DrvWaL~~~~~~~~~~ 605 (775)
T KOG0319|consen 579 NECEMTLDAHNDRVWALSVSPLLDMFV 605 (775)
T ss_pred hhhhhhhhhccceeEEEeecCccceeE
Confidence 999999999999998876665555555
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.34 E-value=1.1e-10 Score=117.49 Aligned_cols=252 Identities=13% Similarity=0.127 Sum_probs=186.8
Q ss_pred EEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCC-e---
Q 005559 79 SETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-R--- 153 (691)
Q Consensus 79 ~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~--- 153 (691)
.++++|. ++|.+|.|++|.+ +|+.++||.+.|||-.-....+-+++. ..-|..|.|+|+|..++.+.- +
T Consensus 49 r~LkGH~--~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~----s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 49 RTLKGHL--NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP----SSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred EEecccc--cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC----ceeEEEEEECCCCCeEEecCcCceeE
Confidence 6788888 8999999999988 578999999999987533323355555 567999999999999999774 3
Q ss_pred EEEEecCC-C---ceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEE
Q 005559 154 YFCMADFA-T---MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAV 224 (691)
Q Consensus 154 ~~~v~n~~-~---~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~ 224 (691)
+|-+..-+ + +..+.++... +-.+|= .|. +...+++.+-|.|.-+||....+ ..|.+-|..+++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHt--gylScC-----~f~-dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl 194 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHT--GYLSCC-----RFL-DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSL 194 (343)
T ss_pred EEecccccccccceeeeeecCcc--ceeEEE-----EEc-CCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEec
Confidence 45444221 1 2223333210 002332 243 45568899999999999988554 468899999999
Q ss_pred CC-CCCEEEEEeeCCeEEEEecCCCCceeeccCCCC------CCCCe--EEEecCceEEEEEc----CeEEEEcCCCC--
Q 005559 225 SP-NGNFVACFTHDGRLVVNNTNFSSPVIDESCESA------LPPEQ--IAWCGMDSVLLYWN----DMLVMVAPQAE-- 289 (691)
Q Consensus 225 Sp-nG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~------~~p~q--~~WCG~davvl~~~----~~l~liGp~~~-- 289 (691)
|| +++..++++-|++.++|+.--......|..+.. .-|.. ++=+.+|+.+-.++ .++.++.+.+.
T Consensus 195 ~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~ 274 (343)
T KOG0286|consen 195 SPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC 274 (343)
T ss_pred CCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence 99 999999999999999998654555556654422 12333 33347888887775 47888887664
Q ss_pred ---ceEeecCCCeEEeecCCc-eEEEecCcceeeeccchhhhhhcccCCCChhhHHHHH
Q 005559 290 ---PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDA 344 (691)
Q Consensus 290 ---~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~~~~If~igS~~Pga~L~~A 344 (691)
++.|+-.+...+..-.|+ +-||.+-+.|-...+..|--+|-.+|.++.|-.|..+
T Consensus 275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence 789988888888887787 9999999999999999998889999999988776654
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.34 E-value=1.3e-10 Score=114.61 Aligned_cols=245 Identities=15% Similarity=0.147 Sum_probs=162.3
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCC-CCe--eccccCCCccccccCeEEE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AEL--IEPNASMGKECFEENVVEC 138 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~-G~~--~~~sl~~~~~~~~~~V~~~ 138 (691)
+.|.+|++|-. +|.=..+|+... +.|-.+.-|||.+.+.+..+..||+||+. ++. .. +|..+ ...|..+
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~d--sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~-t~e~h----~kNVtaV 89 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPD--SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVA-TFEGH----TKNVTAV 89 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCc--cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCcee-EEecc----CCceEEE
Confidence 48999999997 899999999877 79999999999999999999999999995 332 33 56555 4679999
Q ss_pred EEeCCceEEEecCCe-EEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEe-CCeEEEEecCCcc----
Q 005559 139 VFWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ---- 212 (691)
Q Consensus 139 ~~~~~G~vllt~~~~-~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~~~~---- 212 (691)
-|--+|--+.|++.+ ...||++..+...+.-. .....-+|+. ..+|.+++.+. ++.|.+||..+..
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~----~~spVn~vvl----hpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ----HNSPVNTVVL----HPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc----CCCCcceEEe----cCCcceEEeecCCCcEEEEEccCCccccc
Confidence 999999999998854 77777766543333321 1111223322 13555655554 7899999988553
Q ss_pred --cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCC-
Q 005559 213 --KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE- 289 (691)
Q Consensus 213 --~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~- 289 (691)
+....++.++++-|+|+++|.++..|+.++|..--.+...++. |. .++-.+.+.
T Consensus 162 liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~------P~-----------------~k~~ah~~~i 218 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE------PV-----------------HKFQAHNGHI 218 (311)
T ss_pred cCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce------Eh-----------------hheecccceE
Confidence 3456789999999999999999999999999753222222211 10 011222222
Q ss_pred -ceEeecCCCeEEeecCCc-eEEEecCcceeeeccc-hhhhhhcccCCCChhhHHHHHH
Q 005559 290 -PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVP-ASTEQIFAIGSTSPAALLYDAL 345 (691)
Q Consensus 290 -~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp-~~~~~If~igS~~Pga~L~~A~ 345 (691)
...|++|+..+.....|- +|||..+....+.++- .+...++.-.++..|.+|+.|.
T Consensus 219 l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTas 277 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTAS 277 (311)
T ss_pred EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecC
Confidence 345555555555555555 6777666553333332 2333455555566666666654
No 33
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.32 E-value=6e-11 Score=132.80 Aligned_cols=173 Identities=13% Similarity=0.052 Sum_probs=136.1
Q ss_pred cCCCeEEEEcCCCc-eeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeCCC-CeeccccCCCccccccCeEEEE
Q 005559 63 SALRKLRIFNSAGV-LISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHA-ELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 63 ~~~~~I~Iys~sG~-ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G-~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
+.|.++++|+..-. -+-.-++|- .+|.++.|+|-|.. ++++.|+|.++|+..- ..++ .+-.| ..+|-.++
T Consensus 470 SED~svRLWsl~t~s~~V~y~GH~--~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR-ifagh----lsDV~cv~ 542 (707)
T KOG0263|consen 470 SEDSSVRLWSLDTWSCLVIYKGHL--APVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR-IFAGH----LSDVDCVS 542 (707)
T ss_pred cCCcceeeeecccceeEEEecCCC--cceeeEEecCCceEEEecCCCceeeeeecccCCchh-hhccc----ccccceEE
Confidence 36899999997532 344445665 78999999999985 7899999999997743 3355 44444 46688899
Q ss_pred EeCCceEEEecC-CeEEEEecCC-CceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----
Q 005559 140 FWGNGVVCVTEA-NRYFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----- 212 (691)
Q Consensus 140 ~~~~G~vllt~~-~~~~~v~n~~-~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----- 212 (691)
|.||+--++|++ .+.+.+|++. +..++.|.. +..+.-++ .|||+|..++.++.|+.|.+||..+..
T Consensus 543 FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----H~~~V~al---~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 543 FHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG----HKGPVTAL---AFSPCGRYLASGDEDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred ECCcccccccCCCCceEEEEEcCCCcEEEEecC----CCCceEEE---EEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence 999999999987 5688899887 556666653 22333344 589999999999999999999998643
Q ss_pred cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCce
Q 005559 213 KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (691)
Q Consensus 213 ~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l 251 (691)
..|.+.+..|+||.+|..||.++.|.++.+| |+.+..
T Consensus 616 ~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lW--D~~~~~ 652 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSRDGNVLASGGADNSVRLW--DLTKVI 652 (707)
T ss_pred hcccCceeEEEEecCCCEEEecCCCCeEEEE--Echhhc
Confidence 4678999999999999999999999999999 444443
No 34
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.31 E-value=1.6e-10 Score=133.30 Aligned_cols=233 Identities=18% Similarity=0.216 Sum_probs=164.7
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC--------c-----------eeEEEEecCCCCCEEE
Q 005559 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--------V-----------LISETVWKNPGGRLIG 92 (691)
Q Consensus 32 ~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG--------~-----------ll~si~~~~~~~~Iv~ 92 (691)
+=+...|.+||+|..+|+.+| |..|.||..++ . -...+..|. +.|.+
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSD------------D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~--~DV~D 134 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSD------------DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD--SDVLD 134 (942)
T ss_pred cCceeEEEECCCCCeEeeccC------------cceEEEeeecccCCcccccccccccccceeeEEEEEecCC--Cccce
Confidence 446679999999999999975 67788888772 1 345567777 89999
Q ss_pred EEecCCCeE-EEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCC-ceEEEc
Q 005559 93 MSWSEDQTL-ICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFAT-MKVCEL 168 (691)
Q Consensus 93 ~~fs~de~L-v~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~-~~~~~l 168 (691)
+.|+|++.+ ++++-|++|.+||.. .+.++ .+..| +..|..+.+=|-|..+++.+ .+...||...+ .....+
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~-vl~~H----~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLK-VLRGH----QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeee-eeecc----cccccceEECCccCeeeeecCCceEEEEEcccceeeEee
Confidence 999999995 789999999999873 46666 55555 56688877678999999866 45777776443 223334
Q ss_pred CCCCcCCCCceEEEecCCcCCCCCeEEEEEe----CCeEEEEecCCcc-----cccCCCeeEEEECC--------CC---
Q 005559 169 ARPEVEELPHCVAVIEPKYTMTGSVEVLIGT----DAGILMLDEDGVQ-----KVDDTLSQKMAVSP--------NG--- 228 (691)
Q Consensus 169 ~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~----d~ti~l~d~~~~~-----~~~~~~i~~Ia~Sp--------nG--- 228 (691)
+.|.. +.|..--+.-+++||||+.++.... ..++-+++.++-. -.|.+|+.-++|+| ||
T Consensus 210 t~pf~-~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 210 TKPFE-ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred ccchh-hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 44322 2344444566689999998876543 3367777775333 46889999999998 22
Q ss_pred --C----EEEEEeeCCeEEEEecCCCCcee-eccCCCCCCCCeEEEe--cCceEEEEEcCeEEEEc
Q 005559 229 --N----FVACFTHDGRLVVNNTNFSSPVI-DESCESALPPEQIAWC--GMDSVLLYWNDMLVMVA 285 (691)
Q Consensus 229 --~----~IAl~t~dg~i~I~ssd~~~~l~-e~d~~~~~~p~q~~WC--G~davvl~~~~~l~liG 285 (691)
. .+|.++.|++|-||++..-+.+. -++.. .....+|.|| |-.=-+|+.+..|.++.
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 1 68889999999999998777764 22221 3367899999 65555666665555554
No 35
>PTZ00421 coronin; Provisional
Probab=99.31 E-value=6.8e-10 Score=125.29 Aligned_cols=207 Identities=10% Similarity=0.063 Sum_probs=140.3
Q ss_pred CCEEEEcC-CCCeEEEEecCchhhhhhcccCCCeEEEEcCC-C-------ceeEEEEecCCCCCEEEEEecCCC--eEEE
Q 005559 35 RNKVACAP-FGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-G-------VLISETVWKNPGGRLIGMSWSEDQ--TLIC 103 (691)
Q Consensus 35 ~~~vA~sp-~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-G-------~ll~si~~~~~~~~Iv~~~fs~de--~Lv~ 103 (691)
...++++| +|..||+.+ .|++|+||+.. + ..+.++..|. ..|.++.|+|++ .|++
T Consensus 78 V~~v~fsP~d~~~LaSgS------------~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~--~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTAS------------EDGTIMGWGIPEEGLTQNISDPIVHLQGHT--KKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred EEEEEEcCCCCCEEEEEe------------CCCEEEEEecCCCccccccCcceEEecCCC--CcEEEEEeCcCCCCEEEE
Confidence 45788999 677888875 68999999964 3 3577788887 789999999974 3678
Q ss_pred EEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCce-EEEcCCCCcCCCCceE
Q 005559 104 VVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMK-VCELARPEVEELPHCV 180 (691)
Q Consensus 104 v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~-~~~l~~~~l~~~~~~w 180 (691)
++.||+|++||+. |+... .+..+ ...|..+.+.++|-.+++++ ...+.+|+..... ...+.... +....-
T Consensus 144 gs~DgtVrIWDl~tg~~~~-~l~~h----~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~ 216 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAVE-VIKCH----SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA--SAKSQR 216 (493)
T ss_pred EeCCCEEEEEECCCCeEEE-EEcCC----CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC--CCcceE
Confidence 9999999999995 55544 55545 45699999999998888766 4577788876433 33332110 111111
Q ss_pred EEecCCcCCCCCeEEEEEe----CCeEEEEecCCcc------ccc-CCCeeEEEECCCCCEEEEEee-CCeEEEEecCCC
Q 005559 181 AVIEPKYTMTGSVEVLIGT----DAGILMLDEDGVQ------KVD-DTLSQKMAVSPNGNFVACFTH-DGRLVVNNTNFS 248 (691)
Q Consensus 181 ~vi~~~~S~d~~~~vl~s~----d~ti~l~d~~~~~------~~~-~~~i~~Ia~SpnG~~IAl~t~-dg~i~I~ssd~~ 248 (691)
. .|++++..++..+. |++|.+||..... ..+ ...+....++|+|+++++++. ||+|++|...-+
T Consensus 217 ~----~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 217 C----LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred E----EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 1 13456677766653 6899999987432 112 234555679999999999874 999999987544
Q ss_pred Ccee--eccCCCCCCCCeEEEe
Q 005559 249 SPVI--DESCESALPPEQIAWC 268 (691)
Q Consensus 249 ~~l~--e~d~~~~~~p~q~~WC 268 (691)
+.+. +|.. ..+...+.|+
T Consensus 293 ~~~~~~~~~s--~~~~~g~~~~ 312 (493)
T PTZ00421 293 RLTFCSSYSS--VEPHKGLCMM 312 (493)
T ss_pred ceEEEeeccC--CCCCcceEec
Confidence 4432 3432 2234566665
No 36
>PTZ00421 coronin; Provisional
Probab=99.31 E-value=6.9e-10 Score=125.27 Aligned_cols=193 Identities=16% Similarity=0.255 Sum_probs=122.6
Q ss_pred EEEecCCCCCEEEEEecC-CCe-EEEEEeCCeEEEEeCCCC-eeccccCCCccccccCeEEEEEeCCceEEEecCCeEEE
Q 005559 80 ETVWKNPGGRLIGMSWSE-DQT-LICVVQDGTVYRYNIHAE-LIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFC 156 (691)
Q Consensus 80 si~~~~~~~~Iv~~~fs~-de~-Lv~v~~DGtV~ly~~~G~-~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~ 156 (691)
.+..|. +.|.++.|+| +++ |++++.||+|++||+... +.. ...
T Consensus 70 ~l~GH~--~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-~~~------------------------------- 115 (493)
T PTZ00421 70 ILLGQE--GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-NIS------------------------------- 115 (493)
T ss_pred eEeCCC--CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-ccC-------------------------------
Confidence 356677 8999999999 665 678999999999998531 110 000
Q ss_pred EecCCCceEEEcCCCCcCCCCceEEEecCCcCCCC-CeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCE
Q 005559 157 MADFATMKVCELARPEVEELPHCVAVIEPKYTMTG-SVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNF 230 (691)
Q Consensus 157 v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~-~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~ 230 (691)
.+ ...+.. +....+++ .|+|++ ..++..+.|++|.+||..... ..+.++|..++|||+|++
T Consensus 116 -----~~-l~~L~g----H~~~V~~l---~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 116 -----DP-IVHLQG----HTKKVGIV---SFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred -----cc-eEEecC----CCCcEEEE---EeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence 00 111111 11233344 466665 577788889999999987443 347788999999999999
Q ss_pred EEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecC-------------ceEEEEEcC-----eEEEEcCCCC---
Q 005559 231 VACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM-------------DSVLLYWND-----MLVMVAPQAE--- 289 (691)
Q Consensus 231 IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~-------------davvl~~~~-----~l~liGp~~~--- 289 (691)
+|+++.||+|+||+..-.+.+.++..+.........|+.+ |..+..|+- .+........
T Consensus 183 Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~ 262 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSAL 262 (493)
T ss_pred EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCce
Confidence 9999999999999876566666666554333445667633 334555642 1222222211
Q ss_pred -ceEeecCCCeEEeec-CCc-eEEEecCcceee
Q 005559 290 -PVQYFYDEPLVLIPE-CDG-VRILSNSSMEFL 319 (691)
Q Consensus 290 -~v~f~~d~~~~l~~E-~DG-vRIit~~~~efL 319 (691)
...|..++..+++.- -|| ||+|.-...+++
T Consensus 263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 123455666665554 588 999987655443
No 37
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=4.7e-11 Score=121.04 Aligned_cols=196 Identities=14% Similarity=0.162 Sum_probs=143.7
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCC------CCCEEEEEecCCCe-EEEEEeCC
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNP------GGRLIGMSWSEDQT-LICVVQDG 108 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~------~~~Iv~~~fs~de~-Lv~v~~DG 108 (691)
...+||+|+.++..+ .|+.|.+|+. +|++-.-+++... ...|.++.||.|.+ |.+++.||
T Consensus 218 cA~FSPDgqyLvsgS------------vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 218 CARFSPDGQYLVSGS------------VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred heeeCCCCceEeecc------------ccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 457999999998774 7999999997 7988776665321 15799999999866 67999999
Q ss_pred eEEEEeC-CCCeeccccC-CCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCce-EEEcCCCCcCCCCceEEEec
Q 005559 109 TVYRYNI-HAELIEPNAS-MGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMK-VCELARPEVEELPHCVAVIE 184 (691)
Q Consensus 109 tV~ly~~-~G~~~~~sl~-~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~-~~~l~~~~l~~~~~~w~vi~ 184 (691)
.+++|.+ .|..++ .|. .| ..+|...+|+.+|--+++++ .+.+.+.++.+.+ +..+. .+.--|-+
T Consensus 286 kIKvWri~tG~ClR-rFdrAH----tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-------GHsSyvn~ 353 (508)
T KOG0275|consen 286 KIKVWRIETGQCLR-RFDRAH----TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-------GHSSYVNE 353 (508)
T ss_pred cEEEEEEecchHHH-Hhhhhh----ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-------Cccccccc
Confidence 9999987 688776 333 44 46799999998777777766 4577777765433 22332 12223444
Q ss_pred CCcCCCCCeEEEEEeCCeEEEEecCC--cc-----cccCCCeeEEEECCCC-CEEEEEeeCCeEEEEecCCCCceeeccC
Q 005559 185 PKYTMTGSVEVLIGTDAGILMLDEDG--VQ-----KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNTNFSSPVIDESC 256 (691)
Q Consensus 185 ~~~S~d~~~~vl~s~d~ti~l~d~~~--~~-----~~~~~~i~~Ia~SpnG-~~IAl~t~dg~i~I~ssd~~~~l~e~d~ 256 (691)
..|++||..++.++.|+||++|+... |. ....-+|..|-+=|.+ .++...+.++++.|.+-. +++...|.+
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsS 432 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSS 432 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeecc
Confidence 46999999999999999999998763 33 2456678887777655 456666788899988765 666666654
Q ss_pred C
Q 005559 257 E 257 (691)
Q Consensus 257 ~ 257 (691)
+
T Consensus 433 G 433 (508)
T KOG0275|consen 433 G 433 (508)
T ss_pred C
Confidence 3
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.30 E-value=8e-11 Score=130.68 Aligned_cols=181 Identities=9% Similarity=0.064 Sum_probs=142.8
Q ss_pred CCCeEEEEc---CCCc--eeEEEEecCCCCCEEEEEecCCCe--EEEEEeCCeEEEEeCCCCe-ec--ccc------CCC
Q 005559 64 ALRKLRIFN---SAGV--LISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNIHAEL-IE--PNA------SMG 127 (691)
Q Consensus 64 ~~~~I~Iys---~sG~--ll~si~~~~~~~~Iv~~~fs~de~--Lv~v~~DGtV~ly~~~G~~-~~--~sl------~~~ 127 (691)
-|+++++|. ..++ .+....+|. +.|-+++++..+- +++|++|+|+++|++.+.. .. ..+ ..|
T Consensus 385 KD~svilWr~~~~~~~~~~~a~~~gH~--~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH 462 (775)
T KOG0319|consen 385 KDKSVILWRLNNNCSKSLCVAQANGHT--NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH 462 (775)
T ss_pred CCceEEEEEecCCcchhhhhhhhcccc--cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh
Confidence 589999993 3444 355567777 7899999987654 7899999999999997621 11 111 123
Q ss_pred ccccccCeEEEEEeCCceEEEecCC-eEEEEecCCCc-eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEE
Q 005559 128 KECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILM 205 (691)
Q Consensus 128 ~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~~-~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l 205 (691)
+-+|..+.+.+|-..++|+++ +...+|+++.. ..-.|.+ +....|+| +||+..+..++.|.|.||++
T Consensus 463 ----dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG----H~RGvw~V---~Fs~~dq~laT~SgD~TvKI 531 (775)
T KOG0319|consen 463 ----DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG----HTRGVWCV---SFSKNDQLLATCSGDKTVKI 531 (775)
T ss_pred ----cccccceEecCCCceEEecccccceeeecccCceEEEEeeC----CccceEEE---EeccccceeEeccCCceEEE
Confidence 456999999999999999996 47778887622 2233332 44789999 89999999999999999999
Q ss_pred EecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCC
Q 005559 206 LDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (691)
Q Consensus 206 ~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~ 257 (691)
|+.++.. ..|...|.+.+|=-||+++.+...||-+++|+..-.++++.+|.|
T Consensus 532 W~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H 588 (775)
T KOG0319|consen 532 WSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH 588 (775)
T ss_pred EEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence 9988543 568899999999999999999999999999998878888888876
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.28 E-value=9.4e-10 Score=132.27 Aligned_cols=183 Identities=11% Similarity=0.154 Sum_probs=133.1
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC-----c----eeEEEEecCCCCCEEEEEecCC-C-eEEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-----V----LISETVWKNPGGRLIGMSWSED-Q-TLIC 103 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-----~----ll~si~~~~~~~~Iv~~~fs~d-e-~Lv~ 103 (691)
...++++|+|..+|+.+ .+++|+||+... . ++.++.. . ..|.++.|++. + .|++
T Consensus 486 V~~i~fs~dg~~latgg------------~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~--~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 486 VCAIGFDRDGEFFATAG------------VNKKIKIFECESIIKDGRDIHYPVVELAS-R--SKLSGICWNSYIKSQVAS 550 (793)
T ss_pred EEEEEECCCCCEEEEEe------------CCCEEEEEECCcccccccccccceEEecc-c--CceeeEEeccCCCCEEEE
Confidence 35688999999999986 689999998642 2 2233332 2 57999999874 3 4778
Q ss_pred EEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeC-CceEEEecC-CeEEEEecCCCce-EEEcCCCCcCCCCce
Q 005559 104 VVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWG-NGVVCVTEA-NRYFCMADFATMK-VCELARPEVEELPHC 179 (691)
Q Consensus 104 v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~-~~~~~v~n~~~~~-~~~l~~~~l~~~~~~ 179 (691)
++.||+|++||+. |+... .+..| ...|..+.+.+ +|-.++|++ ...+.+|++.... ...+.. ....
T Consensus 551 ~~~Dg~v~lWd~~~~~~~~-~~~~H----~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-----~~~v 620 (793)
T PLN00181 551 SNFEGVVQVWDVARSQLVT-EMKEH----EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-----KANI 620 (793)
T ss_pred EeCCCeEEEEECCCCeEEE-EecCC----CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-----CCCe
Confidence 9999999999986 55555 55555 56799999985 787777766 4578888876432 222321 1223
Q ss_pred EEEecCCc-CCCCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 180 VAVIEPKY-TMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 180 w~vi~~~~-S~d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
+++ .| +++|..++..+.|++|++||..... ..|.++|..+.|+ +|..+++++.||+|++|+..
T Consensus 621 ~~v---~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 621 CCV---QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred EEE---EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 333 34 3578889999999999999986432 3577899999997 67899999999999999754
No 40
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.26 E-value=4e-11 Score=125.38 Aligned_cols=245 Identities=18% Similarity=0.161 Sum_probs=173.9
Q ss_pred CCCeEEEEcCCCc---eeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEE
Q 005559 64 ALRKLRIFNSAGV---LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 64 ~~~~I~Iys~sG~---ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
.+..|++|+-.|. +++++.+.. |.|.++.|.++++ .+..+.|+.+++||...-.+.++|.+| .++|..++
T Consensus 195 ~Dr~Ik~W~v~~~k~~~~~tLaGs~--g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGH----tdkVt~ak 268 (459)
T KOG0288|consen 195 SDRIIKLWNVLGEKSELISTLAGSL--GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGH----TDKVTAAK 268 (459)
T ss_pred hhhhhhhhhcccchhhhhhhhhccC--CCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccc----ccceeeeh
Confidence 7899999998876 577777765 8999999999877 568999999999999643344488888 67899999
Q ss_pred EeCCceEEEecC-CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cc
Q 005559 140 FWGNGVVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KV 214 (691)
Q Consensus 140 ~~~~G~vllt~~-~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~ 214 (691)
|.-.-..+++++ .+....|++....+. ..+ + ....|..|+. ++..++..-.|++|..||..+.. ..
T Consensus 269 ~~~~~~~vVsgs~DRtiK~WDl~k~~C~--kt~-l-~~S~cnDI~~-----~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~ 339 (459)
T KOG0288|consen 269 FKLSHSRVVSGSADRTIKLWDLQKAYCS--KTV-L-PGSQCNDIVC-----SISDVISGHFDKKVRFWDIRSADKTRSVP 339 (459)
T ss_pred hhccccceeeccccchhhhhhhhhhhee--ccc-c-ccccccceEe-----cceeeeecccccceEEEeccCCceeeEee
Confidence 986555466666 457777777543222 111 1 1123444432 23444444458899999966444 34
Q ss_pred cCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEee
Q 005559 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYF 294 (691)
Q Consensus 215 ~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~ 294 (691)
-.|.|+++.+|++|..|-+.+.|.++.++..--.++...|... -..||.| | .-+.|+
T Consensus 340 ~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~-------g~k~asD-----w-----------trvvfS 396 (459)
T KOG0288|consen 340 LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE-------GFKCASD-----W-----------TRVVFS 396 (459)
T ss_pred cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc-------ccccccc-----c-----------ceeEEC
Confidence 5678999999999999988899999998765423332222211 1135555 2 246788
Q ss_pred cCCCeEEeecCCc-eEEEecCcceeeeccchhhhh--hcccCCCChhhHHHHHHH
Q 005559 295 YDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQ--IFAIGSTSPAALLYDALD 346 (691)
Q Consensus 295 ~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~~~~--If~igS~~Pga~L~~A~~ 346 (691)
+++..++....|| |.||+..+..+-.++..++.+ |+.+.-+..|..|+.|.+
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 8889999999999 999997766666666666666 999988888999988864
No 41
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.5e-09 Score=109.04 Aligned_cols=235 Identities=14% Similarity=0.090 Sum_probs=165.0
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEe--CCeE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ--DGTV 110 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~--DGtV 110 (691)
...+.++++|..+.+.. .+.+++||+. +|+.+.+|.-++ -.+-.+.|+.... ++..+. |-++
T Consensus 17 i~sl~fs~~G~~litss------------~dDsl~LYd~~~g~~~~ti~skk--yG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 17 INSLDFSDDGLLLITSS------------EDDSLRLYDSLSGKQVKTINSKK--YGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred eeEEEecCCCCEEEEec------------CCCeEEEEEcCCCceeeEeeccc--ccccEEEEecCCceEEEccCCCCCce
Confidence 35788999999998754 6889999997 899999999876 3577778887655 444555 7899
Q ss_pred EEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecCC-eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcC
Q 005559 111 YRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYT 188 (691)
Q Consensus 111 ~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S 188 (691)
|.-++. .++++ -|++| ...|.....+|-+-.+++++. +.+.+|++..+++.-+-. + ..+.+ + .|+
T Consensus 83 ryLsl~dNkylR-YF~GH----~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~--~-~~~pi-~----AfD 149 (311)
T KOG1446|consen 83 RYLSLHDNKYLR-YFPGH----KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN--L-SGRPI-A----AFD 149 (311)
T ss_pred EEEEeecCceEE-EcCCC----CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe--c-CCCcc-e----eEC
Confidence 999995 56788 55555 467999999998888888775 488888876554433211 1 11221 2 377
Q ss_pred CCCCeEEEEEeCCeEEEEecCCcc----------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCC
Q 005559 189 MTGSVEVLIGTDAGILMLDEDGVQ----------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES 258 (691)
Q Consensus 189 ~d~~~~vl~s~d~ti~l~d~~~~~----------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~ 258 (691)
|+|-..+++...+.|.+.|..... ......|..|.||||||.|.+.|..+.+++++.=-++.+..|....
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~ 229 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP 229 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc
Confidence 888887777777799999988443 1335679999999999999999999999988653345444443221
Q ss_pred CCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecCCCeEEeecCCc-eEEEecCcceeee
Q 005559 259 ALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQ 320 (691)
Q Consensus 259 ~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~ 320 (691)
.. |+.. -...|.+|+..++.++-|| |-||.-+...-..
T Consensus 230 ~~--------~~~~----------------~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 230 NA--------GNLP----------------LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred CC--------CCcc----------------eeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 00 0000 1456777778888888888 8888765544333
No 42
>PTZ00420 coronin; Provisional
Probab=99.22 E-value=4e-09 Score=120.12 Aligned_cols=176 Identities=8% Similarity=0.116 Sum_probs=122.2
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCC-Ce-EEEEEeCCeEEEEeCC-CCe-ec------cccCCCcccc
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED-QT-LICVVQDGTVYRYNIH-AEL-IE------PNASMGKECF 131 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~d-e~-Lv~v~~DGtV~ly~~~-G~~-~~------~sl~~~~~~~ 131 (691)
...+.|++|+. ....+.++.+|. +.|.++.|+|+ +. |++++.||+|++|++. +.. .. ..+..|
T Consensus 51 G~~gvI~L~~~~r~~~v~~L~gH~--~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH---- 124 (568)
T PTZ00420 51 GLIGAIRLENQMRKPPVIKLKGHT--SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH---- 124 (568)
T ss_pred CceeEEEeeecCCCceEEEEcCCC--CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC----
Confidence 45788999985 455778888888 89999999996 44 6799999999999985 321 11 123444
Q ss_pred ccCeEEEEEeCCce-EEEecC-CeEEEEecCCCce-EEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEec
Q 005559 132 EENVVECVFWGNGV-VCVTEA-NRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDE 208 (691)
Q Consensus 132 ~~~V~~~~~~~~G~-vllt~~-~~~~~v~n~~~~~-~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~ 208 (691)
...|..+.+.++|. ++++++ ...+.+|++.... ...+.. .....++ .|+++|..++..+.|++|.+||.
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~-----~~~V~Sl---swspdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM-----PKKLSSL---KWNIKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec-----CCcEEEE---EECCCCCEEEEEecCCEEEEEEC
Confidence 46799999999775 445544 5678889987543 233321 1122333 57899999988888999999998
Q ss_pred CCcc-----cccCCCeeE-----EEECCCCCEEEEEeeCC----eEEEEecC-CCCcee
Q 005559 209 DGVQ-----KVDDTLSQK-----MAVSPNGNFVACFTHDG----RLVVNNTN-FSSPVI 252 (691)
Q Consensus 209 ~~~~-----~~~~~~i~~-----Ia~SpnG~~IAl~t~dg----~i~I~ssd-~~~~l~ 252 (691)
.... ..|.+.+.. ..|||++++|++.+.++ +|.||+.. .++.+.
T Consensus 197 Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~ 255 (568)
T PTZ00420 197 RKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV 255 (568)
T ss_pred CCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE
Confidence 8544 345555332 34579999999877664 79999864 444443
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.20 E-value=1.9e-10 Score=113.48 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=126.2
Q ss_pred CCCeEEEEcCCC--ceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEE
Q 005559 64 ALRKLRIFNSAG--VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 64 ~~~~I~Iys~sG--~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
.+..++||+.+- -+...+..|. +.|..+-|...++ +++...|++||+||. .|+..+ ++.. ...|..+.
T Consensus 120 ~ekllrvfdln~p~App~E~~ght--g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~-sL~~-----~s~VtSlE 191 (334)
T KOG0278|consen 120 QEKLLRVFDLNRPKAPPKEISGHT--GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQ-SLEF-----NSPVTSLE 191 (334)
T ss_pred hHHHhhhhhccCCCCCchhhcCCC--CcceeEEEeccCceEEeeccCCceEEEEeccCcEEE-EEec-----CCCCccee
Confidence 577888888653 3566788887 8899999998777 567799999999988 587766 4432 24588999
Q ss_pred EeCCceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc------c
Q 005559 140 FWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------K 213 (691)
Q Consensus 140 ~~~~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~------~ 213 (691)
++++|-.+.++.+.-+.+|+.....+ ++.. ..|. .|-..+.+|+....|-.+.|..+|.+|-+.-. .
T Consensus 192 vs~dG~ilTia~gssV~Fwdaksf~~--lKs~---k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk 264 (334)
T KOG0278|consen 192 VSQDGRILTIAYGSSVKFWDAKSFGL--LKSY---KMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK 264 (334)
T ss_pred eccCCCEEEEecCceeEEeccccccc--eeec---cCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeeccc
Confidence 99999988888887667776543322 1110 1121 12222445677666666777788888866322 5
Q ss_pred ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCce
Q 005559 214 VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (691)
Q Consensus 214 ~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l 251 (691)
.|.|||+.+.|||+|..-|++++||+|++|+....+.+
T Consensus 265 gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 265 GHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 68899999999999999999999999999988765554
No 44
>PTZ00420 coronin; Provisional
Probab=99.19 E-value=4.8e-09 Score=119.46 Aligned_cols=192 Identities=8% Similarity=-0.014 Sum_probs=131.7
Q ss_pred CCCEEEEcCC-CCeEEEEecCchhhhhhcccCCCeEEEEcCC-Cc--------eeEEEEecCCCCCEEEEEecCCCe-E-
Q 005559 34 SRNKVACAPF-GGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GV--------LISETVWKNPGGRLIGMSWSEDQT-L- 101 (691)
Q Consensus 34 ~~~~vA~sp~-GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-G~--------ll~si~~~~~~~~Iv~~~fs~de~-L- 101 (691)
....++++|+ |..||+.+ .|++|+||+.. |. ++.++..|. +.|.++.|+|++. +
T Consensus 76 ~V~~lafsP~~~~lLASgS------------~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~--~~V~sVaf~P~g~~iL 141 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGS------------EDLTIRVWEIPHNDESVKEIKDPQCILKGHK--KKISIIDWNPMNYYIM 141 (568)
T ss_pred CEEEEEEcCCCCCEEEEEe------------CCCeEEEEECCCCCccccccccceEEeecCC--CcEEEEEECCCCCeEE
Confidence 3457888997 67888775 68999999963 32 345667777 7899999999876 3
Q ss_pred EEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCc-eEEEcCCCCcC-CCC
Q 005559 102 ICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATM-KVCELARPEVE-ELP 177 (691)
Q Consensus 102 v~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~-~~~~l~~~~l~-~~~ 177 (691)
++++.||+|++||+. |+... .+.++ ..|..+.+.++|-.++++. .+.+.+|+.... ....+..+... ...
T Consensus 142 aSgS~DgtIrIWDl~tg~~~~-~i~~~-----~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~ 215 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRAF-QINMP-----KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK 215 (568)
T ss_pred EEEeCCCeEEEEECCCCcEEE-EEecC-----CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE
Confidence 468899999999995 44332 44332 4588888888998887764 556778887643 33334321100 001
Q ss_pred ceEEEecCCcCCCCCeEEEEEeCC----eEEEEecCCcc--------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 178 HCVAVIEPKYTMTGSVEVLIGTDA----GILMLDEDGVQ--------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 178 ~~w~vi~~~~S~d~~~~vl~s~d~----ti~l~d~~~~~--------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
..|.. .|++++..++..+.++ +|.+||..... ..+.+++.-...+++|.+++++..|++|++|..
T Consensus 216 ~v~~~---~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 216 NIWID---GLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EEEee---eEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 22432 4677888888888764 79999987422 122344445556788999999999999999976
Q ss_pred CCC
Q 005559 246 NFS 248 (691)
Q Consensus 246 d~~ 248 (691)
..+
T Consensus 293 ~~~ 295 (568)
T PTZ00420 293 SLG 295 (568)
T ss_pred cCC
Confidence 533
No 45
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.19 E-value=2.6e-09 Score=118.18 Aligned_cols=234 Identities=15% Similarity=0.248 Sum_probs=163.6
Q ss_pred CCCeEEEEcCCCc-eeEEEEecCCCCCEEE-EEec--CCCeEEEEEeCCeEEEEeCCCC-eeccccCCCccccccCeEEE
Q 005559 64 ALRKLRIFNSAGV-LISETVWKNPGGRLIG-MSWS--EDQTLICVVQDGTVYRYNIHAE-LIEPNASMGKECFEENVVEC 138 (691)
Q Consensus 64 ~~~~I~Iys~sG~-ll~si~~~~~~~~Iv~-~~fs--~de~Lv~v~~DGtV~ly~~~G~-~~~~sl~~~~~~~~~~V~~~ 138 (691)
.|+++++|...|+ .+.+-.+..+.+-|.. +.+- ..+.|++.+.|+++-+|.+.+. ... ++..| +..|...
T Consensus 33 Rd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~-~LkgH----~snVC~l 107 (745)
T KOG0301|consen 33 RDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLY-TLKGH----KSNVCSL 107 (745)
T ss_pred CCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchh-hhhcc----ccceeee
Confidence 4789999999655 4444444332255555 5554 3566999999999999998654 455 66666 6789888
Q ss_pred EEeCCceEEEecCC-eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc---cc
Q 005559 139 VFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---KV 214 (691)
Q Consensus 139 ~~~~~G~vllt~~~-~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~---~~ 214 (691)
.+...|. +++++- ....+|-..+- ...+.. +..+.|+|+. + |++ +.++.+.|.+|++|.-+.+. ..
T Consensus 108 s~~~~~~-~iSgSWD~TakvW~~~~l-~~~l~g----H~asVWAv~~--l-~e~-~~vTgsaDKtIklWk~~~~l~tf~g 177 (745)
T KOG0301|consen 108 SIGEDGT-LISGSWDSTAKVWRIGEL-VYSLQG----HTASVWAVAS--L-PEN-TYVTGSADKTIKLWKGGTLLKTFSG 177 (745)
T ss_pred ecCCcCc-eEecccccceEEecchhh-hcccCC----cchheeeeee--c-CCC-cEEeccCcceeeeccCCchhhhhcc
Confidence 8888888 778774 35555553321 111221 3468999963 2 344 89999999999999987665 56
Q ss_pred cCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCC--------CCCCCeEEEecCceEEEEEcCe---EEE
Q 005559 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES--------ALPPEQIAWCGMDSVLLYWNDM---LVM 283 (691)
Q Consensus 215 ~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~--------~~~p~q~~WCG~davvl~~~~~---l~l 283 (691)
|..-|..+++=|++.|+.+. .||.|+.|+.+ ++.++|+..+. ...-..+.=||+|..+..|+.. -.+
T Consensus 178 HtD~VRgL~vl~~~~flScs-NDg~Ir~w~~~-ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I 255 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSHFLSCS-NDGSIRLWDLD-GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVI 255 (745)
T ss_pred chhheeeeEEecCCCeEeec-CCceEEEEecc-CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCceEEEE
Confidence 88889999999998666665 59999999987 77777776543 1122456678999999999863 223
Q ss_pred EcCCCC--ceEeecCCCeEEeecCCc-eEEEecCc
Q 005559 284 VAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSS 315 (691)
Q Consensus 284 iGp~~~--~v~f~~d~~~~l~~E~DG-vRIit~~~ 315 (691)
.=|... ++++..++++ ++...|| |||||.++
T Consensus 256 ~lPttsiWsa~~L~NgDI-vvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNGDI-VVGGSDGRVRVFTVDK 289 (745)
T ss_pred ecCccceEEEEEeeCCCE-EEeccCceEEEEEecc
Confidence 334422 5677655554 5677899 99999884
No 46
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.17 E-value=5.9e-09 Score=103.73 Aligned_cols=194 Identities=16% Similarity=0.248 Sum_probs=138.4
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVF 140 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~ 140 (691)
+.+.+|++|+. +|+.+..+.-.. ++| -+.|+|+|+. +++..|--|...|..-......... ...+.++..
T Consensus 84 s~dk~ir~wd~r~~k~~~~i~~~~--eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-----~~e~ne~~w 155 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTARIETKG--ENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-----KFEVNEISW 155 (313)
T ss_pred cCCceEEEEEeccCcEEEEeeccC--cce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-----cceeeeeee
Confidence 36899999995 899999999765 544 4679998775 5777788788777753222213332 234777777
Q ss_pred eC-CceEEEecCCeEEEEecCCCceEEEcCCCCcCCC-CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----c
Q 005559 141 WG-NGVVCVTEANRYFCMADFATMKVCELARPEVEEL-PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----K 213 (691)
Q Consensus 141 ~~-~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~-~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~ 213 (691)
|. +-++++|.....+.|-.+ |.+..+.. ++.+ ..|.+| .|+|+|...++.+.|.-+-+||.++.. .
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsy--psLkpv~s--i~AH~snCicI---~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is 228 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSY--PSLKPVQS--IKAHPSNCICI---EFDPDGRYFATGSADALVSLWDVDELICERCIS 228 (313)
T ss_pred cCCCCEEEEecCCceEEEEec--cccccccc--cccCCcceEEE---EECCCCceEeeccccceeeccChhHhhhheeec
Confidence 64 557777766443433332 22222221 2233 578877 799999999999999999999999765 3
Q ss_pred ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceE
Q 005559 214 VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSV 273 (691)
Q Consensus 214 ~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~dav 273 (691)
-..-||..++||.||++||++++|--|-|-...-++.+.|..+.. +-..++|--.--+
T Consensus 229 RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~--~t~tVAWHPk~~L 286 (313)
T KOG1407|consen 229 RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG--PTFTVAWHPKRPL 286 (313)
T ss_pred cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC--CceeEEecCCCce
Confidence 467899999999999999999999999888877788888877653 5567888754333
No 47
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=8.4e-10 Score=114.06 Aligned_cols=236 Identities=15% Similarity=0.142 Sum_probs=170.2
Q ss_pred ceeEEEEecCCCCCEEEEEecCCCeEE-EEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEeCCceEEEecCCe
Q 005559 76 VLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR 153 (691)
Q Consensus 76 ~ll~si~~~~~~~~Iv~~~fs~de~Lv-~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~ 153 (691)
.+...+..+. ..|..+-|-|++-++ ++++|+|+++||. .|++.+ ++.+| ...|.++.|...|..++|.+.+
T Consensus 99 ~l~~~l~g~r--~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~-~LrGH----t~sv~di~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 99 NLVQKLAGHR--SSVTRVIFHPSEALVVSASEDATIKVFDTETGELER-SLRGH----TDSVFDISFDASGKYLATCSSD 171 (406)
T ss_pred Cchhhhhccc--cceeeeeeccCceEEEEecCCceEEEEEccchhhhh-hhhcc----ccceeEEEEecCccEEEecCCc
Confidence 4444455555 578889999999986 5679999999998 688877 88887 5669999999999999998877
Q ss_pred E-EEEecCCCceEEEcCC-CCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECC
Q 005559 154 Y-FCMADFATMKVCELAR-PEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSP 226 (691)
Q Consensus 154 ~-~~v~n~~~~~~~~l~~-~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~Sp 226 (691)
. ..+|+++.. ...++. .+-.+..++-+++ |.|..++..+.|+||+.|+.+... ..+...|..|.++-
T Consensus 172 l~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~-----P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 172 LSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFL-----PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred cchhheeHHHH-HHHHHHhcCcccceeeEEEE-----ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence 6 778887643 111210 0000124544544 578999999999999999988543 45677888999999
Q ss_pred CCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCC---------------------eEEEe---cCceEEEEEcC---
Q 005559 227 NGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPE---------------------QIAWC---GMDSVLLYWND--- 279 (691)
Q Consensus 227 nG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~---------------------q~~WC---G~davvl~~~~--- 279 (691)
||.++|+.+.|.++.+|...-.+...++..+ .-+.. ++..| ..|.++..|+-
T Consensus 246 DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred CeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 9999999999999999987655333222211 11112 33334 36788888874
Q ss_pred --eEEEEcCCCC--ceEeecCCCeEEeecCCc-eEEEecCcceeeeccchh
Q 005559 280 --MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPAS 325 (691)
Q Consensus 280 --~l~liGp~~~--~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~ 325 (691)
.+.|+|+++. .+.|.+.|..+++---|+ +|||.-+...=....|.+
T Consensus 325 ~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 325 MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence 5678999885 788887787777666677 999998776666666554
No 48
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.5e-09 Score=122.52 Aligned_cols=230 Identities=14% Similarity=0.125 Sum_probs=164.9
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC-CceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVY 111 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-G~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ 111 (691)
....+++.|---.|-+.- ..++|++|++. |.+|..+.-|. |+|.++.|.|..-| |++++|-+|+
T Consensus 11 RvKglsFHP~rPwILtsl------------HsG~IQlWDYRM~tli~rFdeHd--GpVRgv~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSL------------HSGVIQLWDYRMGTLIDRFDEHD--GPVRGVDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred cccceecCCCCCEEEEee------------cCceeeeehhhhhhHHhhhhccC--CccceeeecCCCCeEEecCCccEEE
Confidence 344677888655554443 57999999985 99999999998 99999999999987 6899999999
Q ss_pred EEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceEEE-cCCCCcCCCCceEEEecCCcCC
Q 005559 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKVCE-LARPEVEELPHCVAVIEPKYTM 189 (691)
Q Consensus 112 ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~~~-l~~~~l~~~~~~w~vi~~~~S~ 189 (691)
+||..-...-+++.+| -+-|..+.|.+.---+++.+ .+.+.|||..+.+..- ++. |+=-|+..+|.|
T Consensus 77 VWnYk~rrclftL~GH----lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG-------HnHYVMcAqFhp 145 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTLLGH----LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG-------HNHYVMCAQFHP 145 (1202)
T ss_pred EEecccceehhhhccc----cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec-------CceEEEeeccCC
Confidence 9999876655677766 57799999988776677655 5688999987655433 332 333455558999
Q ss_pred CCCeEEEEEeCCeEEEEecCCcc----------------------------------cccCCCeeEEEECCCCCEEEEEe
Q 005559 190 TGSVEVLIGTDAGILMLDEDGVQ----------------------------------KVDDTLSQKMAVSPNGNFVACFT 235 (691)
Q Consensus 190 d~~~~vl~s~d~ti~l~d~~~~~----------------------------------~~~~~~i~~Ia~SpnG~~IAl~t 235 (691)
+...+|.+|-|.||.+||..|-. ..|...|.-++|.|.-..|.+++
T Consensus 146 tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 146 TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence 99999999999999999998643 12344456667777666777777
Q ss_pred eCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCC--ceEeecCCCeEEeecCCc-eEEEe
Q 005559 236 HDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILS 312 (691)
Q Consensus 236 ~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~--~v~f~~d~~~~l~~E~DG-vRIit 312 (691)
+|..+++|.=+ ...-.|.| .+.||.+. ++-|-+....+|+...|+ +|||.
T Consensus 226 DDRqVKlWrmn-etKaWEvD--------------------------tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 226 DDRQVKLWRMN-ETKAWEVD--------------------------TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred CcceeeEEEec-cccceeeh--------------------------hhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 76666666422 11112222 24456553 666666667777777777 88887
Q ss_pred cCc
Q 005559 313 NSS 315 (691)
Q Consensus 313 ~~~ 315 (691)
-++
T Consensus 279 m~k 281 (1202)
T KOG0292|consen 279 MTK 281 (1202)
T ss_pred ccc
Confidence 655
No 49
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=1.2e-09 Score=112.95 Aligned_cols=197 Identities=15% Similarity=0.104 Sum_probs=142.9
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC--ceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTV 110 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG--~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV 110 (691)
+.+-|++..+|..+|..+ .|-.+++|+..+ +-+.+...|. ..|-++.|-|.+. +++.+.|.||
T Consensus 152 sv~di~~~a~Gk~l~tcS------------sDl~~~LWd~~~~~~c~ks~~gh~--h~vS~V~f~P~gd~ilS~srD~ti 217 (406)
T KOG0295|consen 152 SVFDISFDASGKYLATCS------------SDLSAKLWDFDTFFRCIKSLIGHE--HGVSSVFFLPLGDHILSCSRDNTI 217 (406)
T ss_pred ceeEEEEecCccEEEecC------------CccchhheeHHHHHHHHHHhcCcc--cceeeEEEEecCCeeeecccccce
Confidence 356788999998888875 455599999876 4566677776 6799999999877 5689999999
Q ss_pred EEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecCCe-EEEEecCCCceE-EEcCCCCcCCCCceEEEecCCc
Q 005559 111 YRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMKV-CELARPEVEELPHCVAVIEPKY 187 (691)
Q Consensus 111 ~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~-~~~v~n~~~~~~-~~l~~~~l~~~~~~w~vi~~~~ 187 (691)
+.|+.+ |.... ++..+ ..-|.-+++..+|..+++.+.+ ...+|-+..... ..+.++. ....|-+..|-.+
T Consensus 218 k~We~~tg~cv~-t~~~h----~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hE--h~vEci~wap~~~ 290 (406)
T KOG0295|consen 218 KAWECDTGYCVK-TFPGH----SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHE--HPVECIAWAPESS 290 (406)
T ss_pred eEEecccceeEE-eccCc----hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccc--cceEEEEeccccc
Confidence 999996 44455 78777 3468888999999999997753 445554443211 1122110 1124444444332
Q ss_pred CC----------CCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCce
Q 005559 188 TM----------TGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (691)
Q Consensus 188 S~----------d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l 251 (691)
.| .++.++..+.|+||+.|+..... ..|...|..++|||-||||++..+|+++.||+-.-.+.+
T Consensus 291 ~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 291 YPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred CcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 22 24678888899999999998554 568899999999999999999999999999976544443
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=3.1e-09 Score=116.12 Aligned_cols=232 Identities=14% Similarity=0.120 Sum_probs=166.0
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeCCCCe-eccccCCCccccccCeEEEE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECV 139 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G~~-~~~sl~~~~~~~~~~V~~~~ 139 (691)
+-|..|+||+. .|..+.++.-|+ +-|.++.-.|..-. ++.++|-+|++||+.++. ...+|.+| +.-|.++.
T Consensus 74 sDD~~IrVfnynt~ekV~~FeAH~--DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH----~HyVMqv~ 147 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTGEKVKTFEAHS--DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGH----EHYVMQVA 147 (794)
T ss_pred cCCceEEEEecccceeeEEeeccc--cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCc----ceEEEEEE
Confidence 35899999996 699999999998 89999999998775 689999999999999875 22377777 57799999
Q ss_pred EeC-CceEEEecC-CeEEEEecCCCceE-EEcCCCCcCCC--CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc--
Q 005559 140 FWG-NGVVCVTEA-NRYFCMADFATMKV-CELARPEVEEL--PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-- 212 (691)
Q Consensus 140 ~~~-~G~vllt~~-~~~~~v~n~~~~~~-~~l~~~~l~~~--~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-- 212 (691)
|.| +--.+++.+ .+.+.||++..|.+ .+|.. +. ..|-+..+- .|.-.++..+.|.++++||-+...
T Consensus 148 fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g----HekGVN~Vdyy~~---gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 148 FNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG----HEKGVNCVDYYTG---GDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred ecCCCccceeeeeccccEEEEEcCCCCCceeeec----cccCcceEEeccC---CCcceEEecCCCceEEEeecchHHHH
Confidence 998 555666666 56889999876532 22321 22 344444221 123477888889999999998665
Q ss_pred ---cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEe-----cCceEEEEEcCeEEEE
Q 005559 213 ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC-----GMDSVLLYWNDMLVMV 284 (691)
Q Consensus 213 ---~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC-----G~davvl~~~~~l~li 284 (691)
..|...|..+.|.|.=..|+++++|||++||.+.--+.-..++ --..=.|| |+..|++-+++...++
T Consensus 221 ~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-----~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 221 QTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-----YGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred HHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh-----cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 5688999999999999999999999999999874222211111 11244699 7788899998876666
Q ss_pred cCCCC--ceEeecCCCeE--EeecCCceEEEe
Q 005559 285 APQAE--PVQYFYDEPLV--LIPECDGVRILS 312 (691)
Q Consensus 285 Gp~~~--~v~f~~d~~~~--l~~E~DGvRIit 312 (691)
--+.+ .++....+.++ -.+|+-++.|-|
T Consensus 296 ~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks 327 (794)
T KOG0276|consen 296 KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKS 327 (794)
T ss_pred EccCCCCceeecCCccEEEEcCceeeeeecee
Confidence 54443 55655555444 344555544444
No 51
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.16 E-value=3.3e-09 Score=109.34 Aligned_cols=181 Identities=17% Similarity=0.122 Sum_probs=138.1
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEe
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN 114 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~ 114 (691)
.||+-|+....|+.+ .|++|+||+. +|+|..++.+|- ..+-++.+|+--- |.++++|+.|+.||
T Consensus 156 ~vavdP~n~wf~tgs------------~DrtikIwDlatg~LkltltGhi--~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 156 SVAVDPGNEWFATGS------------ADRTIKIWDLATGQLKLTLTGHI--ETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred EEeeCCCceeEEecC------------CCceeEEEEcccCeEEEeecchh--heeeeeeecccCceEEEecCCCeeEEEe
Confidence 678889888888774 7999999995 899999999998 8999999998765 67999999999999
Q ss_pred CC-CCeeccccCCCccccccCeEEEEEeCCceEEEecCCe-EEEEecCCC-ceEEEcCCCCcCCCCceEEEecCCcCCCC
Q 005559 115 IH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYTMTG 191 (691)
Q Consensus 115 ~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~-~~~v~n~~~-~~~~~l~~~~l~~~~~~w~vi~~~~S~d~ 191 (691)
+. .++++ .+.+| -.+|....+.|+=-+++|++.+ +..||++.. ..+..++. +.-..-.|. +.+..
T Consensus 222 Le~nkvIR-~YhGH----lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G----H~~~V~~V~---~~~~d 289 (460)
T KOG0285|consen 222 LEYNKVIR-HYHGH----LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG----HTNPVASVM---CQPTD 289 (460)
T ss_pred chhhhhHH-Hhccc----cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC----CCCcceeEE---eecCC
Confidence 94 55677 55444 4679999999988889998764 778888753 23444442 111222332 33455
Q ss_pred CeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 192 SVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 192 ~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
..++..+.|+||.+||..... ..|...+..++..|.-...|+++.| .|+-|.
T Consensus 290 pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~ 346 (460)
T KOG0285|consen 290 PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWK 346 (460)
T ss_pred CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceecc
Confidence 668999999999999987433 3577889999999998888888866 444443
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=5.5e-09 Score=104.47 Aligned_cols=189 Identities=13% Similarity=0.110 Sum_probs=140.4
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC-C--ceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCe
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-G--VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-G--~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGt 109 (691)
+...||.+|.|..+|.++ .|.++-||... | +-+.+|.+|. ..|.+++||++|. |++.+.|..
T Consensus 63 sVRsvAwsp~g~~La~aS------------FD~t~~Iw~k~~~efecv~~lEGHE--nEVK~Vaws~sG~~LATCSRDKS 128 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASAS------------FDATVVIWKKEDGEFECVATLEGHE--NEVKCVAWSASGNYLATCSRDKS 128 (312)
T ss_pred eeeeeeecCCCcEEEEee------------ccceEEEeecCCCceeEEeeeeccc--cceeEEEEcCCCCEEEEeeCCCe
Confidence 345899999999999996 89999999964 3 4688899998 7899999999998 569999999
Q ss_pred EEEEeCC--CCeecc-ccCCCccccccCeEEEEEeCCceEEEecCC-eEEEEecCCCceEEEcCCCCcC-CCCceEEEec
Q 005559 110 VYRYNIH--AELIEP-NASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVE-ELPHCVAVIE 184 (691)
Q Consensus 110 V~ly~~~--G~~~~~-sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~~~~~~l~~~~l~-~~~~~w~vi~ 184 (691)
|-+|-.. +++.-. -+..| ...|-.+.+.|+--++++.++ +.+.++..+...-|.+... ++ +....|++
T Consensus 129 VWiWe~deddEfec~aVL~~H----tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t-l~g~~~TVW~~-- 201 (312)
T KOG0645|consen 129 VWIWEIDEDDEFECIAVLQEH----TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT-LDGHENTVWSL-- 201 (312)
T ss_pred EEEEEecCCCcEEEEeeeccc----cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE-ecCccceEEEE--
Confidence 9999665 565321 34444 345777666677667777775 3555544332322322110 11 33588998
Q ss_pred CCcCCCCCeEEEEEeCCeEEEEecCCcc-cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 185 PKYTMTGSVEVLIGTDAGILMLDEDGVQ-KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 185 ~~~S~d~~~~vl~s~d~ti~l~d~~~~~-~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
.|.+.|+..+..+.|+|+.+|..-... ..+.+++..+++- || .||++..|+.|.+...+
T Consensus 202 -~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 202 -AFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKES 261 (312)
T ss_pred -EecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec-cc-ceEeccCCCEEEEEEec
Confidence 699999999999999999999854223 4577888888888 76 89999999999887643
No 53
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.15 E-value=4.6e-09 Score=108.72 Aligned_cols=284 Identities=12% Similarity=0.098 Sum_probs=187.0
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVY 111 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ 111 (691)
+.+.|+.+|+-.+.|+.+ .|..-.+|+. +|..+..+..|+ ..|.+.+||.||.| +++.=+|.|+
T Consensus 66 svFavsl~P~~~l~aTGG------------gDD~AflW~~~~ge~~~eltgHK--DSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGG------------GDDLAFLWDISTGEFAGELTGHK--DSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred ceEEEEeCCCCceEEecC------------CCceEEEEEccCCcceeEecCCC--CceEEEEEccCceEEEecCCCccEE
Confidence 567889999666666553 6899999995 799999999999 89999999999996 5899999999
Q ss_pred EEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecCCe-EEEEecCCC-ceEEEcCCCCcCCCCceEEEecCCcC
Q 005559 112 RYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYT 188 (691)
Q Consensus 112 ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~-~~~v~n~~~-~~~~~l~~~~l~~~~~~w~vi~~~~S 188 (691)
+|... |.... .+-. + -.+|.=.+..|.|-+++.++.+ ...+|++.+ .....++.+. -+|-+ -.|+
T Consensus 132 v~~~stg~~~~-~~~~--e--~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~----~~ct~---G~f~ 199 (399)
T KOG0296|consen 132 VFKVSTGGEQW-KLDQ--E--VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHN----SPCTC---GEFI 199 (399)
T ss_pred EEEcccCceEE-Eeec--c--cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCC----CCccc---cccc
Confidence 99775 33332 3321 1 1223333444788888876633 334455544 4455555421 12221 2466
Q ss_pred CCCCeEEEEEeCCeEEEEecCCccc------ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccC-CC---
Q 005559 189 MTGSVEVLIGTDAGILMLDEDGVQK------VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC-ES--- 258 (691)
Q Consensus 189 ~d~~~~vl~s~d~ti~l~d~~~~~~------~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~-~~--- 258 (691)
|+|..++....|++|++|+...+++ ....+-+-|+++-+|..+-..+.++...+.+...++++.-++. ..
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~ 279 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELK 279 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccc
Confidence 8999999999999999999987761 2244566778888887777777777666665544444432221 11
Q ss_pred ------CCCCCeEEEe---------cCceEEEEEcC---eEEEEcCCCC---ceEeecCCCeEEeecCCc-eEEEecCcc
Q 005559 259 ------ALPPEQIAWC---------GMDSVLLYWND---MLVMVAPQAE---PVQYFYDEPLVLIPECDG-VRILSNSSM 316 (691)
Q Consensus 259 ------~~~p~q~~WC---------G~davvl~~~~---~l~liGp~~~---~v~f~~d~~~~l~~E~DG-vRIit~~~~ 316 (691)
......+.|| +=|..+..|+. .+.-+=+..+ .++|.. .+.++....|| ||+|.....
T Consensus 280 ~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG 358 (399)
T KOG0296|consen 280 PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG 358 (399)
T ss_pred ccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeecccc
Confidence 1123455666 45666777763 2222222222 445543 56777888899 999999999
Q ss_pred eeeeccchhhhhhcccCCCChhhHHHHH
Q 005559 317 EFLQRVPASTEQIFAIGSTSPAALLYDA 344 (691)
Q Consensus 317 efL~~Vp~~~~~If~igS~~Pga~L~~A 344 (691)
.++..--.|+..|..+.=++.+..++.+
T Consensus 359 ~l~~~y~GH~~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 359 QLKFTYTGHQMGILDFALSPQKRLVVTV 386 (399)
T ss_pred ceEEEEecCchheeEEEEcCCCcEEEEe
Confidence 9999888888888876655544444433
No 54
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.15 E-value=4.2e-10 Score=115.31 Aligned_cols=188 Identities=16% Similarity=0.196 Sum_probs=134.9
Q ss_pred CeEEEEecCchhhhhhcccCCCeEEEEcCCC-ceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeC-CCCeec
Q 005559 45 GPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIE 121 (691)
Q Consensus 45 G~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~-~G~~~~ 121 (691)
|.-.+--|+.|+|. ...|++|+||+.+. .-+..+.+|. |.|.++.|. ++ +|++++|.||++||+ .|+.++
T Consensus 199 gVYClQYDD~kiVS---GlrDnTikiWD~n~~~c~~~L~GHt--GSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVS---GLRDNTIKIWDKNSLECLKILTGHT--GSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred ceEEEEecchhhhc---ccccCceEEeccccHHHHHhhhcCC--CcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 44455556667763 23699999999754 5566788888 999999995 44 578999999999999 488888
Q ss_pred cccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCC
Q 005559 122 PNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA 201 (691)
Q Consensus 122 ~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ 201 (691)
++-+|. +.|...+| .+|.++-.+..+-..||+...|.-..+..... ++-..-+++ +| |...+|.++.|.
T Consensus 272 -tlihHc----eaVLhlrf-~ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvV--df--d~kyIVsASgDR 340 (499)
T KOG0281|consen 272 -TLIHHC----EAVLHLRF-SNGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVV--DF--DDKYIVSASGDR 340 (499)
T ss_pred -HHhhhc----ceeEEEEE-eCCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeee--cc--ccceEEEecCCc
Confidence 555563 45777664 57777777778888888888775333322111 222222333 56 456999999999
Q ss_pred eEEEEecCCcc--c---ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCcee
Q 005559 202 GILMLDEDGVQ--K---VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (691)
Q Consensus 202 ti~l~d~~~~~--~---~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~ 252 (691)
||++|+.+.+. . .|...| -+.-.+|+++.+++.|.||.+|...-+..+.
T Consensus 341 TikvW~~st~efvRtl~gHkRGI--AClQYr~rlvVSGSSDntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLR 394 (499)
T ss_pred eEEEEeccceeeehhhhcccccc--eehhccCeEEEecCCCceEEEEeccccHHHH
Confidence 99999999776 2 233333 2456799999999999999999877665553
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=3.9e-09 Score=103.56 Aligned_cols=194 Identities=12% Similarity=0.065 Sum_probs=144.9
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCC-CeEEEEEeCCeEEEEe
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED-QTLICVVQDGTVYRYN 114 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~d-e~Lv~v~~DGtV~ly~ 114 (691)
.|.+.-+|....+.. .+.+|++||+ .|.+|.+-..|. ..|.+.+-+.| .++...+.|..|.+||
T Consensus 22 avryN~dGnY~ltcG------------sdrtvrLWNp~rg~liktYsghG--~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCG------------SDRTVRLWNPLRGALIKTYSGHG--HEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred EEEEccCCCEEEEcC------------CCceEEeecccccceeeeecCCC--ceeeeccccccccccccCCCCceEEEEE
Confidence 444555555554443 6899999997 899999999987 67999998765 5688999999999999
Q ss_pred C-CCCeeccccCCCccccccCeEEEEEeCCceEEEecCCe-EEEEecCC--CceEEEcCCCCcCCCCceEEEecCCcCCC
Q 005559 115 I-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFA--TMKVCELARPEVEELPHCVAVIEPKYTMT 190 (691)
Q Consensus 115 ~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~-~~~v~n~~--~~~~~~l~~~~l~~~~~~w~vi~~~~S~d 190 (691)
. .|+..+ .+..| ..+|..++|....-++++++.+ -..+|+-. .+.|.++-+- ......+|. -.
T Consensus 88 V~TGkv~R-r~rgH----~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde---a~D~V~Si~-----v~ 154 (307)
T KOG0316|consen 88 VNTGKVDR-RFRGH----LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE---AKDGVSSID-----VA 154 (307)
T ss_pred cccCeeee-ecccc----cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh---hcCceeEEE-----ec
Confidence 9 588888 56655 5779999999999999998854 55566533 2223222110 112333331 25
Q ss_pred CCeEEEEEeCCeEEEEecCC-cc--cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCC
Q 005559 191 GSVEVLIGTDAGILMLDEDG-VQ--KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (691)
Q Consensus 191 ~~~~vl~s~d~ti~l~d~~~-~~--~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~ 257 (691)
+.-++..+.||++..+|... .. .--..||+.++|||+|+.....+-++++++...+-++.|.+|..+
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 67788888999999999773 33 335689999999999999888889999999998878887777655
No 56
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.14 E-value=1.2e-09 Score=116.61 Aligned_cols=205 Identities=13% Similarity=0.176 Sum_probs=144.1
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCC-e-EEEEEeCCeEEEE
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ-T-LICVVQDGTVYRY 113 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de-~-Lv~v~~DGtV~ly 113 (691)
-++++++|.-+-.++ .|.+|++|+. .|+-+.++.-.. .+.++.|.||+ + +++++.||.|+.|
T Consensus 263 d~~~s~~g~~fLS~s------------fD~~lKlwDtETG~~~~~f~~~~---~~~cvkf~pd~~n~fl~G~sd~ki~~w 327 (503)
T KOG0282|consen 263 DASFNNCGTSFLSAS------------FDRFLKLWDTETGQVLSRFHLDK---VPTCVKFHPDNQNIFLVGGSDKKIRQW 327 (503)
T ss_pred hhhccccCCeeeeee------------cceeeeeeccccceEEEEEecCC---CceeeecCCCCCcEEEEecCCCcEEEE
Confidence 345666666665553 7999999997 799999988653 68999999988 4 4789999999999
Q ss_pred eC-CCCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceEEEc-CCCCcCCCCceEEEecCCcCCC
Q 005559 114 NI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKVCEL-ARPEVEELPHCVAVIEPKYTMT 190 (691)
Q Consensus 114 ~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~~~l-~~~~l~~~~~~w~vi~~~~S~d 190 (691)
|+ .|++.+ .+..+ -..|.++.|-++|--+++++ ..-+.+|.+..+-+..+ .++.. ....|.++ .|+
T Consensus 328 DiRs~kvvq-eYd~h----Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~-hsmP~~~~-----~P~ 396 (503)
T KOG0282|consen 328 DIRSGKVVQ-EYDRH----LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEM-HTMPCLTL-----HPN 396 (503)
T ss_pred eccchHHHH-HHHhh----hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhh-ccCcceec-----CCC
Confidence 98 588877 77766 46799999999886666655 45666776655544333 22211 22233333 367
Q ss_pred CCeEEEEEeCCeEEEEecCCcc--------ccc--CCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCC
Q 005559 191 GSVEVLIGTDAGILMLDEDGVQ--------KVD--DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESAL 260 (691)
Q Consensus 191 ~~~~vl~s~d~ti~l~d~~~~~--------~~~--~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~ 260 (691)
+...+-=+.|+.|++++..... ..| .|--.++.|||||.+|++++.+|.+++|+-.-.+.+..+..+ ..
T Consensus 397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~ 475 (503)
T KOG0282|consen 397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQ 475 (503)
T ss_pred CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-Cc
Confidence 7777777788888888866432 122 244568999999999999999999999976655555555555 23
Q ss_pred CCCeEEEe
Q 005559 261 PPEQIAWC 268 (691)
Q Consensus 261 ~p~q~~WC 268 (691)
+..++.|-
T Consensus 476 ~ci~v~wH 483 (503)
T KOG0282|consen 476 PCIGVDWH 483 (503)
T ss_pred ceEEEEec
Confidence 44555553
No 57
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.6e-08 Score=102.68 Aligned_cols=250 Identities=16% Similarity=0.274 Sum_probs=158.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEc---CCCceeEEEEecCCCCCEEEEEecCC--CeE-EEEEeCC
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN---SAGVLISETVWKNPGGRLIGMSWSED--QTL-ICVVQDG 108 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys---~sG~ll~si~~~~~~~~Iv~~~fs~d--e~L-v~v~~DG 108 (691)
..-|++-+||.-+|+.+ .|.+++||+ .+|+---|-.|....+.|+.+.|-+- |+. .+++.|+
T Consensus 16 ihdVs~D~~GRRmAtCS------------sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Dr 83 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCS------------SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDR 83 (361)
T ss_pred eeeeeecccCceeeecc------------CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCC
Confidence 35788999999999985 799999999 35766666666554489999999764 664 5999999
Q ss_pred eEEEEeC-------CCC-e-eccccCCCccccccCeEEEEEeC--CceEEEecCC----eEEEEecCCCceEEEc-----
Q 005559 109 TVYRYNI-------HAE-L-IEPNASMGKECFEENVVECVFWG--NGVVCVTEAN----RYFCMADFATMKVCEL----- 168 (691)
Q Consensus 109 tV~ly~~-------~G~-~-~~~sl~~~~~~~~~~V~~~~~~~--~G~vllt~~~----~~~~v~n~~~~~~~~l----- 168 (691)
|++||-- +|. - ...++... ...|.+++|.| -|+.+++.+. ++|...+..+-.-|.|
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~Ds----rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDS----RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecC----CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhh
Confidence 9999932 221 1 12244333 56799999987 7888887553 3555444434444444
Q ss_pred --CCCCcCCCCceEEEecCCcCCC---CCeEEEEEeC-----CeEEEEe--cCCcc-------cccCCCeeEEEECCCC-
Q 005559 169 --ARPEVEELPHCVAVIEPKYTMT---GSVEVLIGTD-----AGILMLD--EDGVQ-------KVDDTLSQKMAVSPNG- 228 (691)
Q Consensus 169 --~~~~l~~~~~~w~vi~~~~S~d---~~~~vl~s~d-----~ti~l~d--~~~~~-------~~~~~~i~~Ia~SpnG- 228 (691)
.+|+....-.|-+| +++++ ...++..+.+ +.+++|. .++.. ..+..||+.|+|+||-
T Consensus 160 ~~~~pp~~~~~~~~Cv---sWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 160 NVIDPPGKNKQPCFCV---SWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred hccCCcccccCcceEE---eeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence 22222222233333 23333 3444555444 1455554 44422 4578999999999984
Q ss_pred ---CEEEEEeeCCeEEEEecCCC-CceeeccCCCCCCCCeEEEecCceEEEEEcCeEE----EEcCCCC--ceEeecCCC
Q 005559 229 ---NFVACFTHDGRLVVNNTNFS-SPVIDESCESALPPEQIAWCGMDSVLLYWNDMLV----MVAPQAE--PVQYFYDEP 298 (691)
Q Consensus 229 ---~~IAl~t~dg~i~I~ssd~~-~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~----liGp~~~--~v~f~~d~~ 298 (691)
..||.++.|| |.|+...-. ..+.| +....|.+|. +-.+. +-+|+++ .++|...+.
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~---ee~~~~~~~~-----------~l~v~~vs~~~~H~~~VWrv~wNmtGt 301 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEE---EEVLAPDLMT-----------DLPVEKVSELDDHNGEVWRVRWNMTGT 301 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhh---hcccCCCCcc-----------ccceEEeeeccCCCCceEEEEEeeeee
Confidence 5899999999 888865321 11111 1112333331 12222 3346665 688888899
Q ss_pred eEEeecCCc-eEEEecCccee
Q 005559 299 LVLIPECDG-VRILSNSSMEF 318 (691)
Q Consensus 299 ~~l~~E~DG-vRIit~~~~ef 318 (691)
+...+.-|| ||+|-.+-...
T Consensus 302 iLsStGdDG~VRLWkany~n~ 322 (361)
T KOG2445|consen 302 ILSSTGDDGCVRLWKANYNNL 322 (361)
T ss_pred EEeecCCCceeeehhhhhhhh
Confidence 999999999 99998764443
No 58
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.12 E-value=7.8e-08 Score=100.32 Aligned_cols=243 Identities=14% Similarity=0.197 Sum_probs=151.0
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeE--EEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEE
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL--ICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~L--v~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
.++.|.+|+. +|+.+.++..+ +.+.++.|+|+++. ++...++++++||.. |+... .+..+ ..+..+.
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~---~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~~-----~~~~~~~ 79 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVG---QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG-TLPSG-----PDPELFA 79 (300)
T ss_pred CCCEEEEEECCCCceEEEEECC---CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE-eccCC-----CCccEEE
Confidence 5789999997 68888888754 35778999999874 345678999999985 55544 44333 2244567
Q ss_pred EeCCceEE-EecC-CeEEEEecCCCce-EEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCC-eEEEEecCCcc---
Q 005559 140 FWGNGVVC-VTEA-NRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA-GILMLDEDGVQ--- 212 (691)
Q Consensus 140 ~~~~G~vl-lt~~-~~~~~v~n~~~~~-~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~-ti~l~d~~~~~--- 212 (691)
++++|-.+ ++.. .....+++....+ ...++. ...+.+ + .++|+|...+..+.++ .++.|+..+..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~--~---~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~ 151 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV---GVEPEG--M---AVSPDGKIVVNTSETTNMAHFIDTKTYEIVD 151 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC---CCCcce--E---EECCCCCEEEEEecCCCeEEEEeCCCCeEEE
Confidence 77877544 4432 3456666766433 222321 112333 2 3678999888777654 46667766433
Q ss_pred -cccCCCeeEEEECCCCCEEEEEe-eCCeEEEEecCCCCceeeccCC------CCCCCCeEEEecCce----------EE
Q 005559 213 -KVDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTNFSSPVIDESCE------SALPPEQIAWCGMDS----------VL 274 (691)
Q Consensus 213 -~~~~~~i~~Ia~SpnG~~IAl~t-~dg~i~I~ssd~~~~l~e~d~~------~~~~p~q~~WCG~da----------vv 274 (691)
.........+++||+|+.++..+ .+|++.+|+..-.+.+..++.. ....|..+.|+.+.. .+
T Consensus 152 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i 231 (300)
T TIGR03866 152 NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRV 231 (300)
T ss_pred EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeE
Confidence 11223456799999999886554 4799999987645444433311 011344455542221 22
Q ss_pred EEEcC----eEE--EEcCCCCceEeecCCCeEEee-cCCc-eEEEecCcceeeeccc
Q 005559 275 LYWND----MLV--MVAPQAEPVQYFYDEPLVLIP-ECDG-VRILSNSSMEFLQRVP 323 (691)
Q Consensus 275 l~~~~----~l~--liGp~~~~v~f~~d~~~~l~~-E~DG-vRIit~~~~efL~~Vp 323 (691)
..|+- .+. ..|.....+.|..++..++++ +.+| |+||..+..+.+.+++
T Consensus 232 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 232 AVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 33431 122 223333478888888877765 4577 9999999999888886
No 59
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=9.3e-10 Score=116.70 Aligned_cols=187 Identities=14% Similarity=0.173 Sum_probs=137.4
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~l 112 (691)
.....+||+|..||+.+ ..+.|.+-+. +|++|.+++-+ |.|.++.|+.|++ |++++.+|.|.+
T Consensus 306 ~e~FeVShd~~fia~~G------------~~G~I~lLhakT~eli~s~Kie---G~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 306 MERFEVSHDSNFIAIAG------------NNGHIHLLHAKTKELITSFKIE---GVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred hheeEecCCCCeEEEcc------------cCceEEeehhhhhhhhheeeec---cEEeeEEEecCCcEEEEEcCCceEEE
Confidence 34788999999999997 4688999987 89999999975 7999999999887 678899999999
Q ss_pred EeCCCCeeccccCCCccccccCeEEEEE--eCCceEEEecCC-eEEEEecCC----CceEEEcCCCCcCCCCceEEEecC
Q 005559 113 YNIHAELIEPNASMGKECFEENVVECVF--WGNGVVCVTEAN-RYFCMADFA----TMKVCELARPEVEELPHCVAVIEP 185 (691)
Q Consensus 113 y~~~G~~~~~sl~~~~~~~~~~V~~~~~--~~~G~vllt~~~-~~~~v~n~~----~~~~~~l~~~~l~~~~~~w~vi~~ 185 (691)
||+.-....+.+.. ++.|..-.+ +.+|-.+++++. .|+-|.+.+ +..++.+.. + . --.-+|-.-
T Consensus 371 ~nl~~~~~~~rf~D-----~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~--~-d-NLtt~Itsl 441 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVD-----DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKT--V-D-NLTTAITSL 441 (514)
T ss_pred EecCCcceEEEEee-----cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhh--h-h-hhheeeeee
Confidence 99965543324432 455654444 579999999885 366665543 222222221 0 0 111233334
Q ss_pred CcCCCCCeEEEEEe--CCeEEEEecCCcc--------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 186 KYTMTGSVEVLIGT--DAGILMLDEDGVQ--------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 186 ~~S~d~~~~vl~s~--d~ti~l~d~~~~~--------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
+|++|+++.+++|. .+.+.+...-.+. ....+.++.|+|||+|-++|.+++.|++.+|..
T Consensus 442 ~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 442 QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred eeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 79999999999987 6678888877665 234567899999999999999999999998853
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.6e-09 Score=107.33 Aligned_cols=230 Identities=15% Similarity=0.163 Sum_probs=154.8
Q ss_pred ccccccCCCCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC--CCceeEEEEecCCCCCEEEEEecCC
Q 005559 21 PELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS--AGVLISETVWKNPGGRLIGMSWSED 98 (691)
Q Consensus 21 ~~~y~~~w~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~--sG~ll~si~~~~~~~~Iv~~~fs~d 98 (691)
.++.++.|.+ .-+-|+-|++-.-++++- ..|++++||+. .-++|..++-|. ..|.++.|++-
T Consensus 52 ~e~~s~d~~D---~LfdV~Wse~~e~~~~~a-----------~GDGSLrl~d~~~~s~Pi~~~kEH~--~EV~Svdwn~~ 115 (311)
T KOG0277|consen 52 QECQSYDTED---GLFDVAWSENHENQVIAA-----------SGDGSLRLFDLTMPSKPIHKFKEHK--REVYSVDWNTV 115 (311)
T ss_pred EEEEeeeccc---ceeEeeecCCCcceEEEE-----------ecCceEEEeccCCCCcchhHHHhhh--hheEEeccccc
Confidence 4555667754 346788888877777664 36999999994 345777777666 68999999983
Q ss_pred --CeEEEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeC-CceEEEecCC-eEEEEecCCCceE-EEcCCCC
Q 005559 99 --QTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWG-NGVVCVTEAN-RYFCMADFATMKV-CELARPE 172 (691)
Q Consensus 99 --e~Lv~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~~-~~~~v~n~~~~~~-~~l~~~~ 172 (691)
+.+++.+-|||||+|++. ++-++ ++.++ +..|..++++| .+-++++.++ ..-.+||+..+-. ..++-
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~-Tf~gh----~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a-- 188 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQ-TFNGH----NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA-- 188 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceE-eecCC----ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe--
Confidence 446777999999999885 44456 56666 56799999987 5555555444 4566777764421 11221
Q ss_pred cCCCCceEEEecCCcCC-CCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCC-CEEEEEeeCCeEEEEe
Q 005559 173 VEELPHCVAVIEPKYTM-TGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNN 244 (691)
Q Consensus 173 l~~~~~~w~vi~~~~S~-d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG-~~IAl~t~dg~i~I~s 244 (691)
+. -.++.-+++. +..+.++.+.|+.|+.||..... ..|.-.|.+|++||.. ..||+.+.|-|.+||+
T Consensus 189 --h~---~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 189 --HN---SEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred --cc---ceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecc
Confidence 11 1122223442 56788899999999999998654 2455669999999986 4799999999999996
Q ss_pred cCCC-Cc------eeeccCC---CCCCCCeEEEecCceEEEEEc
Q 005559 245 TNFS-SP------VIDESCE---SALPPEQIAWCGMDSVLLYWN 278 (691)
Q Consensus 245 sd~~-~~------l~e~d~~---~~~~p~q~~WCG~davvl~~~ 278 (691)
-.-. .. ..||-.+ +.-.|.+|+=||-|..+-.|+
T Consensus 264 ~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 264 PERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 4311 11 2344321 122567787777777666664
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.11 E-value=8.8e-09 Score=107.11 Aligned_cols=240 Identities=15% Similarity=0.161 Sum_probs=162.1
Q ss_pred cCCCeEEEEcCCCceeEEEEecCCCCCEEEEEec-CCCe---EEEEEeCCeEEEEeCC-CCeecccc---CCCccccccC
Q 005559 63 SALRKLRIFNSAGVLISETVWKNPGGRLIGMSWS-EDQT---LICVVQDGTVYRYNIH-AELIEPNA---SMGKECFEEN 134 (691)
Q Consensus 63 ~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs-~de~---Lv~v~~DGtV~ly~~~-G~~~~~sl---~~~~~~~~~~ 134 (691)
+.|++++||+..|+-+.++.+|. ++|.++.|- +|.. +++++.|.|+++|-+. |+...... .+| +..
T Consensus 122 sYDg~~riWd~~Gk~~~~~~Ght--~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH----k~~ 195 (423)
T KOG0313|consen 122 SYDGTSRIWDLKGKSIKTIVGHT--GPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH----KRS 195 (423)
T ss_pred ecCCeeEEEecCCceEEEEecCC--cceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccc----ccc
Confidence 48999999999999999999999 899999984 4444 7899999999999774 44321111 134 467
Q ss_pred eEEEEEeCCceEEEecCC-eEEEEecCCCc----------eEEEc--------CCCC---cCCC-CceEEEecCCcCCCC
Q 005559 135 VVECVFWGNGVVCVTEAN-RYFCMADFATM----------KVCEL--------ARPE---VEEL-PHCVAVIEPKYTMTG 191 (691)
Q Consensus 135 V~~~~~~~~G~vllt~~~-~~~~v~n~~~~----------~~~~l--------~~~~---l~~~-~~~w~vi~~~~S~d~ 191 (691)
|-.+...++|..+++++- ....+|+.+.. +.+.. ...| +.++ ....+| .|++ .
T Consensus 196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V---~w~d-~ 271 (423)
T KOG0313|consen 196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV---VWSD-A 271 (423)
T ss_pred eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE---EEcC-C
Confidence 888888999999999985 46677773210 00000 0011 1122 233344 3544 6
Q ss_pred CeEEEEEeCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCC--CCc-eeeccCCCCCCCCe
Q 005559 192 SVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNF--SSP-VIDESCESALPPEQ 264 (691)
Q Consensus 192 ~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~--~~~-l~e~d~~~~~~p~q 264 (691)
......+-|+||+.||..... .....++..|+.+|..++||+++.|..|.+|+.-- +.+ -..|-.| +.-...
T Consensus 272 ~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH-~nwVss 350 (423)
T KOG0313|consen 272 TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH-KNWVSS 350 (423)
T ss_pred CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc-hhhhhh
Confidence 777788889999999987333 34678899999999999999999999999996421 111 2344444 335667
Q ss_pred EEEe----------cCceEEEEEcC-----eE-EEEcCCCC--ceEeecCCCeEEeecCCc-eEEEecC
Q 005559 265 IAWC----------GMDSVLLYWND-----ML-VMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNS 314 (691)
Q Consensus 265 ~~WC----------G~davvl~~~~-----~l-~liGp~~~--~v~f~~d~~~~l~~E~DG-vRIit~~ 314 (691)
+.|| .-|..+..|+- .+ .+-|++.. .+.|+ ++..++....|. +||+...
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 7777 45677778862 23 45566444 34442 344566666787 8887654
No 62
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.11 E-value=3.3e-09 Score=112.63 Aligned_cols=184 Identities=14% Similarity=0.100 Sum_probs=139.9
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCC-CeEEEEEeCCeEE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED-QTLICVVQDGTVY 111 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~d-e~Lv~v~~DGtV~ 111 (691)
....+|+||+|..+|+.. .++.|+||+. +++.+..++.|. +.|.+++|-.. .+|.+.+.|++|+
T Consensus 204 eil~~avS~Dgkylatgg------------~d~~v~Iw~~~t~ehv~~~~ghr--~~V~~L~fr~gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGG------------RDRHVQIWDCDTLEHVKVFKGHR--GAVSSLAFRKGTSELYSASADRSVK 269 (479)
T ss_pred eeEEEEEcCCCcEEEecC------------CCceEEEecCcccchhhcccccc--cceeeeeeecCccceeeeecCCceE
Confidence 345899999999999875 6899999998 799999999999 99999999875 6699999999999
Q ss_pred EEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEec-CCeEEEEecCC-CceEEEcCCCCcCCCCceEEEecCCcC
Q 005559 112 RYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTE-ANRYFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYT 188 (691)
Q Consensus 112 ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~-~~~~~~v~n~~-~~~~~~l~~~~l~~~~~~w~vi~~~~S 188 (691)
+|+.+ -.+.++.|+++ +.|..+....-+-++..+ ..+...+|.+. +.++.-.++ .+.+.|-+.|
T Consensus 270 vw~~~~~s~vetlyGHq-----d~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~---~~sidcv~~I----- 336 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGHQ-----DGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGG---EGSIDCVAFI----- 336 (479)
T ss_pred EEehhHhHHHHHHhCCc-----cceeeechhcccceEEeccccceeEEEeccccceeeeeCC---CCCeeeEEEe-----
Confidence 99995 35667566664 678888777766666555 34555666653 222222221 1347888876
Q ss_pred CCCCeEEEEEeCCeEEEEecCCcc---------cccCC--------CeeEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 189 MTGSVEVLIGTDAGILMLDEDGVQ---------KVDDT--------LSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 189 ~d~~~~vl~s~d~ti~l~d~~~~~---------~~~~~--------~i~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
+..-.|+.+.+|+|.+|+..... ..... .|+.+++.|+..++|+++.+|-+++|..
T Consensus 337 -n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 337 -NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred -cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 45557888899999999988543 11111 6889999999999999999998888764
No 63
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.08 E-value=3.1e-08 Score=98.99 Aligned_cols=254 Identities=13% Similarity=0.081 Sum_probs=177.2
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEe
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN 114 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~ 114 (691)
-|-...+|-++=... -|.++.+|-+ +|+.|.+..+|. |.|.++.-.-+.+ |++.+.|.++++||
T Consensus 15 qiKyN~eGDLlFsca------------KD~~~~vw~s~nGerlGty~GHt--GavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 15 QIKYNREGDLLFSCA------------KDSTPTVWYSLNGERLGTYDGHT--GAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred eEEecCCCcEEEEec------------CCCCceEEEecCCceeeeecCCC--ceEEEEEecCCcceeeeccccceeEEEE
Confidence 344556666666553 4778888887 999999999999 9999998887755 78999999999999
Q ss_pred C-CCCeeccccCCCccccccCeEEEEEeCCceEEEecCC---------eEEEEecCC------CceEEEcCCCCcCCCCc
Q 005559 115 I-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN---------RYFCMADFA------TMKVCELARPEVEELPH 178 (691)
Q Consensus 115 ~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~---------~~~~v~n~~------~~~~~~l~~~~l~~~~~ 178 (691)
. .|+.+. ++..+ ..|..+.|+.+|-.++.... .++.+.+-+ +| ..+++-+. ..+.
T Consensus 81 v~tGk~la-~~k~~-----~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep-~~kI~t~~--skit 151 (327)
T KOG0643|consen 81 VETGKQLA-TWKTN-----SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP-YLKIPTPD--SKIT 151 (327)
T ss_pred cCCCcEEE-EeecC-----CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc-eEEecCCc--ccee
Confidence 9 588765 54433 45889999887755444322 133333211 12 22232111 1111
Q ss_pred eEEEecCCcCCCCCeEEEEEeCCeEEEEecCCc-c-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCcee
Q 005559 179 CVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV-Q-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (691)
Q Consensus 179 ~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~-~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~ 252 (691)
-++ ++|.++.++....++.|-.||.... + ..|...|+.|.+||+..+..+++.|.+-++++..--+++.
T Consensus 152 -~a~----Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 152 -SAL----WGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred -eee----ecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence 122 5678999999999999999998853 2 4677899999999999999999999999998765445555
Q ss_pred eccCCC------CCCCCeEEEe--cCceEEEEE--------c---------Ce-EEEEcCCCC--ceEeecCCCeEEeec
Q 005559 253 DESCES------ALPPEQIAWC--GMDSVLLYW--------N---------DM-LVMVAPQAE--PVQYFYDEPLVLIPE 304 (691)
Q Consensus 253 e~d~~~------~~~p~q~~WC--G~davvl~~--------~---------~~-l~liGp~~~--~v~f~~d~~~~l~~E 304 (691)
.|.+.. -++..+.+-| |.||--+.- + ++ =.+.||.|- +|-|.+++..+.+.-
T Consensus 227 ty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 227 TYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred EeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence 555432 2233455556 455544321 1 11 257788885 999999999999999
Q ss_pred CCc-eEEEecCccee
Q 005559 305 CDG-VRILSNSSMEF 318 (691)
Q Consensus 305 ~DG-vRIit~~~~ef 318 (691)
.|| |||..=++.+|
T Consensus 307 EDG~VR~h~Fd~~YF 321 (327)
T KOG0643|consen 307 EDGYVRLHHFDSNYF 321 (327)
T ss_pred CCceEEEEEeccchh
Confidence 999 99987665554
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=4.8e-09 Score=102.96 Aligned_cols=209 Identities=15% Similarity=0.137 Sum_probs=152.7
Q ss_pred eeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEeC-CceEEEecCCe
Q 005559 77 LISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANR 153 (691)
Q Consensus 77 ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~~~ 153 (691)
.+..+..++ |.|..+-|+-||+. ++.++|.|||+||+ .|.+++ ++..+ -.+|.++.... |-.+..-+..+
T Consensus 9 r~~~l~~~q--gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-tYsgh----G~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 9 RLSILDCAQ--GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-TYSGH----GHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred hceeecccc--cceEEEEEccCCCEEEEcCCCceEEeecccccceee-eecCC----CceeeeccccccccccccCCCCc
Confidence 456677778 89999999999997 57999999999999 588888 66655 35699988865 55555556667
Q ss_pred EEEEecCCCc-eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-------cccCCCeeEEEEC
Q 005559 154 YFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVS 225 (691)
Q Consensus 154 ~~~v~n~~~~-~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-------~~~~~~i~~Ia~S 225 (691)
.+++|+++.. ..+++.. +.....+| .|..+.++++..+.|.++.+||-.... ......|.+|.++
T Consensus 82 ~v~vwDV~TGkv~Rr~rg----H~aqVNtV---~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRG----HLAQVNTV---RFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred eEEEEEcccCeeeeeccc----ccceeeEE---EecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence 9999999854 4556653 22344444 687788888999999999999987554 1234556666665
Q ss_pred CCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecCCCeEEeecC
Q 005559 226 PNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPEC 305 (691)
Q Consensus 226 pnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d~~~~l~~E~ 305 (691)
+..|..++.||+++.++.-.++....| +|+.=.+++|+.|+.+.|.+..
T Consensus 155 --~heIvaGS~DGtvRtydiR~G~l~sDy-----------------------------~g~pit~vs~s~d~nc~La~~l 203 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRKGTLSSDY-----------------------------FGHPITSVSFSKDGNCSLASSL 203 (307)
T ss_pred --ccEEEeeccCCcEEEEEeecceeehhh-----------------------------cCCcceeEEecCCCCEEEEeec
Confidence 446888889999987765434333222 2233347889999999999999
Q ss_pred Cc-eEEEecCcceeeeccchhhhhhc
Q 005559 306 DG-VRILSNSSMEFLQRVPASTEQIF 330 (691)
Q Consensus 306 DG-vRIit~~~~efL~~Vp~~~~~If 330 (691)
|+ +|++..++.++|+.--.+...=|
T Consensus 204 ~stlrLlDk~tGklL~sYkGhkn~ey 229 (307)
T KOG0316|consen 204 DSTLRLLDKETGKLLKSYKGHKNMEY 229 (307)
T ss_pred cceeeecccchhHHHHHhccccccee
Confidence 99 99999999998876555543333
No 65
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.07 E-value=1.2e-08 Score=103.55 Aligned_cols=207 Identities=14% Similarity=0.139 Sum_probs=139.5
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC--CCceeEEEEecCCCCCEEEEEecCCCeEE-EEEeCCeE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS--AGVLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDGTV 110 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~--sG~ll~si~~~~~~~~Iv~~~fs~de~Lv-~v~~DGtV 110 (691)
+...+++||.-..+..++ +.|++||+|.- +|.++.+-.-.. .++|.++.|+.||..| +++.||.+
T Consensus 29 sIS~l~FSP~~~~~~~A~-----------SWD~tVR~wevq~~g~~~~ka~~~~-~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAG-----------SWDGTVRIWEVQNSGQLVPKAQQSH-DGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred chheeEeccccCceEEec-----------ccCCceEEEEEecCCcccchhhhcc-CCCeEEEEEccCCceEEeeccCCce
Confidence 455889999444443343 48999999984 588887654433 2799999999999875 89999999
Q ss_pred EEEeCCCCeeccccCCCccccccCeEEEEEeCCce--EEEecCC-eEEEEecCCCc------------------------
Q 005559 111 YRYNIHAELIEPNASMGKECFEENVVECVFWGNGV--VCVTEAN-RYFCMADFATM------------------------ 163 (691)
Q Consensus 111 ~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~--vllt~~~-~~~~v~n~~~~------------------------ 163 (691)
++||+...... .+.+| +..|..|++-+.+. .++|++- +....|+...+
T Consensus 97 k~wDL~S~Q~~-~v~~H----d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vV 171 (347)
T KOG0647|consen 97 KLWDLASGQVS-QVAAH----DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVV 171 (347)
T ss_pred EEEEccCCCee-eeeec----ccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEE
Confidence 99999655444 67777 67788888766444 7777773 34455554321
Q ss_pred -------eEEEcCCCCc--C--CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCc-c---------c---cc---C
Q 005559 164 -------KVCELARPEV--E--ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV-Q---------K---VD---D 216 (691)
Q Consensus 164 -------~~~~l~~~~l--~--~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~-~---------~---~~---~ 216 (691)
..+.|.+++- + ..|.-|.+-....-.|++..++.+.+|.+-+-..+.. + + .. .
T Consensus 172 ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 1223333220 0 1132232111112247777799999998777666642 1 1 11 2
Q ss_pred CCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCC
Q 005559 217 TLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (691)
Q Consensus 217 ~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~ 257 (691)
-+|..|+|.|....+|+.+.||+.-.|+.|-...|.++..+
T Consensus 252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred EEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 25788999999999999999999999999988888776544
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.06 E-value=2.6e-08 Score=113.12 Aligned_cols=240 Identities=14% Similarity=0.133 Sum_probs=175.3
Q ss_pred CCCeEEEEcC-CCceeEE-EEecCCCCCEEEEEecC-CCeEEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEE
Q 005559 64 ALRKLRIFNS-AGVLISE-TVWKNPGGRLIGMSWSE-DQTLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~s-i~~~~~~~~Iv~~~fs~-de~Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
.+.+|++|+. .|..+.+ +.+|. +.|.++.|.. +..|++++.|.|+|+||. .|+... ++..+++ ++. .
T Consensus 226 ~~~tl~~~~~~~~~~i~~~l~GH~--g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~-~l~gh~s-----tv~-~ 296 (537)
T KOG0274|consen 226 DDSTLHLWDLNNGYLILTRLVGHF--GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH-SLQGHTS-----SVR-C 296 (537)
T ss_pred CCceeEEeecccceEEEeeccCCC--CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE-EecCCCc-----eEE-E
Confidence 6899999997 7999999 99999 9999999987 455789999999999997 588877 6666622 222 2
Q ss_pred EeCCceEEEecC-CeEEEEecCCCceEEEcCC-CCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----
Q 005559 140 FWGNGVVCVTEA-NRYFCMADFATMKVCELAR-PEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----- 212 (691)
Q Consensus 140 ~~~~G~vllt~~-~~~~~v~n~~~~~~~~l~~-~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----- 212 (691)
+.-.+..+++++ ...+.||+++.+....+-. +. ....+..+ ++...|..+.|++|.+|+.....
T Consensus 297 ~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~--~~V~~v~~-------~~~~lvsgs~d~~v~VW~~~~~~cl~sl 367 (537)
T KOG0274|consen 297 LTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHT--GPVNCVQL-------DEPLLVSGSYDGTVKVWDPRTGKCLKSL 367 (537)
T ss_pred EEccCceEeeccCCceEEEEeccCcceEEEecccc--ccEEEEEe-------cCCEEEEEecCceEEEEEhhhceeeeee
Confidence 344555566645 4588889988665444421 10 11233332 68889999999999999988333
Q ss_pred cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCC-CceeeccCCC------CCCCCeEEEecCceEEEEEcC-----e
Q 005559 213 KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS-SPVIDESCES------ALPPEQIAWCGMDSVLLYWND-----M 280 (691)
Q Consensus 213 ~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~-~~l~e~d~~~------~~~p~q~~WCG~davvl~~~~-----~ 280 (691)
..|.+.|..+.+.++ +.+..++.|++|++|+-.-. +.+..+..+. ......+.+|+-|..+..|+. .
T Consensus 368 ~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 368 SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCcee
Confidence 568999999999987 78999999999999986544 4444333221 234568889999999999963 2
Q ss_pred EEEEcCCCCceEeecCC-CeEEeecCCc-eEEEecCcceeeecc
Q 005559 281 LVMVAPQAEPVQYFYDE-PLVLIPECDG-VRILSNSSMEFLQRV 322 (691)
Q Consensus 281 l~liGp~~~~v~f~~d~-~~~l~~E~DG-vRIit~~~~efL~~V 322 (691)
-.+-|+.-..+.+-..+ +.++.+--|| ++++.-..+.+.+++
T Consensus 447 ~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 447 RTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhhhh
Confidence 24555433456665554 7778888899 999999989998877
No 67
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.06 E-value=8.2e-09 Score=108.18 Aligned_cols=243 Identities=14% Similarity=0.159 Sum_probs=167.3
Q ss_pred CCEEEEEecCCCe-EEEEEeCCeEEEEeC--CCCe-eccccCCCccccccCeEEEEEeCCceEEEe-cCCeEEEEecCCC
Q 005559 88 GRLIGMSWSEDQT-LICVVQDGTVYRYNI--HAEL-IEPNASMGKECFEENVVECVFWGNGVVCVT-EANRYFCMADFAT 162 (691)
Q Consensus 88 ~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~--~G~~-~~~sl~~~~~~~~~~V~~~~~~~~G~vllt-~~~~~~~v~n~~~ 162 (691)
..|.-+.||++|+ |++++.|.|..+|.. ++++ +.+++-++ ..+|.-+.++|+.--+++ +......+||++.
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh----~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH----SQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc----cCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 6899999999999 689999999999944 5554 34466555 467999888886555544 5566778889885
Q ss_pred ceEEEcCCCCcC-CC-CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEe
Q 005559 163 MKVCELARPEVE-EL-PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFT 235 (691)
Q Consensus 163 ~~~~~l~~~~l~-~~-~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t 235 (691)
...+..-...++ +. ..+|+ |||.-.|..+.|++++.|+.+|.. ......|..|+++|||+.+.+.+
T Consensus 301 gd~~~~y~~~~~~S~~sc~W~-------pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 301 GDLRHLYPSGLGFSVSSCAWC-------PDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred chhhhhcccCcCCCcceeEEc-------cCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 544433221221 11 34454 799999999999999999999887 23334589999999999999999
Q ss_pred eCCeEEEEecCC--CC-ceeeccCCCCCCCCeEEEecCceEEE---------EEcC-----eEEEEcCCCC-ce---Eee
Q 005559 236 HDGRLVVNNTNF--SS-PVIDESCESALPPEQIAWCGMDSVLL---------YWND-----MLVMVAPQAE-PV---QYF 294 (691)
Q Consensus 236 ~dg~i~I~ssd~--~~-~l~e~d~~~~~~p~q~~WCG~davvl---------~~~~-----~l~liGp~~~-~v---~f~ 294 (691)
.|..|.+++..- ++ .+.| ..+...+.-.++.-.++ .|+- -.+..|+... .+ -|-
T Consensus 374 ~d~~i~l~~~e~~~dr~lise-----~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLISE-----EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred cccceeeechhhhhhhccccc-----cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 999999886421 11 1222 22334444444444333 3431 1234455543 21 222
Q ss_pred -cCCCeEEeecCCc-eEEEecCcceeeeccchhhhhhcccCCCC-hhhHHHHHHH
Q 005559 295 -YDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTS-PAALLYDALD 346 (691)
Q Consensus 295 -~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~~~~If~igS~~-Pga~L~~A~~ 346 (691)
+++.++++...|+ |+||...+..++..+|+++..|-.+...+ .-.|+..|.|
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 3457888888999 99999999999999999999888876553 3467777764
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=9.4e-09 Score=109.92 Aligned_cols=184 Identities=11% Similarity=0.102 Sum_probs=143.2
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeE-EEEecCCCCCEEEEEecCC-CeE-EEEEeCC
Q 005559 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLIS-ETVWKNPGGRLIGMSWSED-QTL-ICVVQDG 108 (691)
Q Consensus 32 ~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~-si~~~~~~~~Iv~~~fs~d-e~L-v~v~~DG 108 (691)
......+-++|+++.+++..+ -|.++++|+.++.-+. .+..|. +.|-+.+|+|- +++ ++++-||
T Consensus 110 ~apv~~~~f~~~d~t~l~s~s-----------Dd~v~k~~d~s~a~v~~~l~~ht--DYVR~g~~~~~~~hivvtGsYDg 176 (487)
T KOG0310|consen 110 QAPVHVTKFSPQDNTMLVSGS-----------DDKVVKYWDLSTAYVQAELSGHT--DYVRCGDISPANDHIVVTGSYDG 176 (487)
T ss_pred cCceeEEEecccCCeEEEecC-----------CCceEEEEEcCCcEEEEEecCCc--ceeEeeccccCCCeEEEecCCCc
Confidence 345678889999999988874 5889999999876654 678887 89999999994 554 6899999
Q ss_pred eEEEEeCCC--CeeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCC-CceE-EEcCCCCcCCC--CceEEE
Q 005559 109 TVYRYNIHA--ELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFA-TMKV-CELARPEVEEL--PHCVAV 182 (691)
Q Consensus 109 tV~ly~~~G--~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~-~~~~-~~l~~~~l~~~--~~~w~v 182 (691)
+||+||..- +... ++.++ ..|-.+-+-|+|-.+++..|+.+.||++. +.+. ..+.+ +. .+|..+
T Consensus 177 ~vrl~DtR~~~~~v~-elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~----H~KtVTcL~l 246 (487)
T KOG0310|consen 177 KVRLWDTRSLTSRVV-ELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFN----HNKTVTCLRL 246 (487)
T ss_pred eEEEEEeccCCceeE-EecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhc----ccceEEEEEe
Confidence 999998853 3333 66665 44777788899999999999999999987 3222 22221 22 456655
Q ss_pred ecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEeeCCeEEEE
Q 005559 183 IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVN 243 (691)
Q Consensus 183 i~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ 243 (691)
. .+++-.+..+-|+.|.+++.++-. -.-.+||..|++||+++.++.+-.+|.+.+.
T Consensus 247 ~-----s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 247 A-----SDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred e-----cCCceEeecccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 3 477888888889999999976555 2357999999999999999999999998876
No 69
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=8.6e-08 Score=97.84 Aligned_cols=256 Identities=13% Similarity=0.169 Sum_probs=166.4
Q ss_pred cccccccEEEecccccccCCCCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEE---EEecC
Q 005559 9 EWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE---TVWKN 85 (691)
Q Consensus 9 ~W~~l~~~~yr~~~~y~~~w~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~s---i~~~~ 85 (691)
.|.+=+..|-....+-.+.-.. =....+++|.+|..+|+.. .|++|+||+...-+... ++-+-
T Consensus 65 ~~k~~q~~f~Hpl~~~~LKgH~--~~vt~~~FsSdGK~lat~~------------~Dr~Ir~w~~~DF~~~eHr~~R~nv 130 (420)
T KOG2096|consen 65 QWKAKQPTFVHPLNVSVLKGHK--KEVTDVAFSSDGKKLATIS------------GDRSIRLWDVRDFENKEHRCIRQNV 130 (420)
T ss_pred hhcccCCCcccchhhhhhhccC--CceeeeEEcCCCceeEEEe------------CCceEEEEecchhhhhhhhHhhccc
Confidence 4555555555443333333211 1345789999999999996 68999999986643322 22222
Q ss_pred CCCCEEEEEecCCCeE-E-EEEeCCeEEEEeC----CCCeeccccCC---C-ccccccCeEEEEEeCCceEEEecC-CeE
Q 005559 86 PGGRLIGMSWSEDQTL-I-CVVQDGTVYRYNI----HAELIEPNASM---G-KECFEENVVECVFWGNGVVCVTEA-NRY 154 (691)
Q Consensus 86 ~~~~Iv~~~fs~de~L-v-~v~~DGtV~ly~~----~G~~~~~sl~~---~-~~~~~~~V~~~~~~~~G~vllt~~-~~~ 154 (691)
+.+....+.|+||..- | .+-...++++|.+ +|....++..- + .+..+..|+++-+-++|.++++.+ +.-
T Consensus 131 e~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~ 210 (420)
T KOG2096|consen 131 EYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK 210 (420)
T ss_pred cCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc
Confidence 2256778889999873 3 4556667999955 46543322211 0 011245577777889999999977 456
Q ss_pred EEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecC----Ccc---------cccCCCeeE
Q 005559 155 FCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED----GVQ---------KVDDTLSQK 221 (691)
Q Consensus 155 ~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~----~~~---------~~~~~~i~~ 221 (691)
+.+|+..+..+..+.- +......+.+ ||+|..++..+.-..|++|..- |.. ..|...|+.
T Consensus 211 i~lw~lkGq~L~~idt---nq~~n~~aav----SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~ 283 (420)
T KOG2096|consen 211 ICLWDLKGQLLQSIDT---NQSSNYDAAV----SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLA 283 (420)
T ss_pred EEEEecCCceeeeecc---ccccccceee----CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheee
Confidence 7788887766555531 1123444543 5789998888888878887543 322 468888999
Q ss_pred EEECCCCCEEEEEeeCCeEEEEecCCC-------Cceeecc---CCCCCCCCeEEEe-cCceEEEEEcCeEEEEc
Q 005559 222 MAVSPNGNFVACFTHDGRLVVNNTNFS-------SPVIDES---CESALPPEQIAWC-GMDSVLLYWNDMLVMVA 285 (691)
Q Consensus 222 Ia~SpnG~~IAl~t~dg~i~I~ssd~~-------~~l~e~d---~~~~~~p~q~~WC-G~davvl~~~~~l~liG 285 (691)
.+||||...+++.+.||+++||++|-. ..|.++. ...-+.|--++-| .-|..++++...+.++.
T Consensus 284 ~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 284 AAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA 358 (420)
T ss_pred eeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence 999999999999999999999998742 1122331 1123466677777 34566777776666554
No 70
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=1.2e-08 Score=116.21 Aligned_cols=192 Identities=14% Similarity=0.137 Sum_probs=137.2
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCc---eeEEEEecCCCCCEEEEEecCCCeEE-EEEeC
Q 005559 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGV---LISETVWKNPGGRLIGMSWSEDQTLI-CVVQD 107 (691)
Q Consensus 33 l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~---ll~si~~~~~~~~Iv~~~fs~de~Lv-~v~~D 107 (691)
....+.+++-+++..++.. .+++|+.|+- +|+ +|..+. -++..+.|+-+|..+ .+++|
T Consensus 55 ~g~~v~~ia~~s~~f~~~s------------~~~tv~~y~fps~~~~~iL~Rft-----lp~r~~~v~g~g~~iaagsdD 117 (933)
T KOG1274|consen 55 SGELVSSIACYSNHFLTGS------------EQNTVLRYKFPSGEEDTILARFT-----LPIRDLAVSGSGKMIAAGSDD 117 (933)
T ss_pred cCceeEEEeecccceEEee------------ccceEEEeeCCCCCccceeeeee-----ccceEEEEecCCcEEEeecCc
Confidence 4555667777777666654 6899999994 554 555554 368888999999865 68888
Q ss_pred CeEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCce-EEEcCCCCc-CCCCceEEEe
Q 005559 108 GTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMK-VCELARPEV-EELPHCVAVI 183 (691)
Q Consensus 108 GtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~-~~~l~~~~l-~~~~~~w~vi 183 (691)
-.|++-+.. +.... .+..+ +..|..+.+.++|.+++..+ ...+.+|++++.. ...+++..- .+....-.+.
T Consensus 118 ~~vK~~~~~D~s~~~-~lrgh----~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~ 192 (933)
T KOG1274|consen 118 TAVKLLNLDDSSQEK-VLRGH----DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICT 192 (933)
T ss_pred eeEEEEeccccchhe-eeccc----CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceee
Confidence 889999885 33333 55555 57799999999998777766 3466777776432 222332111 0112122233
Q ss_pred cCCcCCCCCeEEEEEeCCeEEEEecCCcc-------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 184 EPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 184 ~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
.|.|+|+|...++.+.+++|.+++..+-. ..+...|.-++|||||++||..+.+|.|.||+.+
T Consensus 193 ~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred eeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 45799999999999999999999988554 2233348999999999999999999999999998
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=3.6e-08 Score=100.68 Aligned_cols=176 Identities=14% Similarity=0.136 Sum_probs=122.3
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEe
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~ 141 (691)
.+.+|+.-+. +-+-|.-+++|. ..|.++.-+|-|+ .++++-|++||+||+.-+--+-.+... ... -+.+-
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~--~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-----~~p-i~AfD 149 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHK--KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-----GRP-IAAFD 149 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCC--ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-----CCc-ceeEC
Confidence 5788888886 567788999998 8999999999555 689999999999999622111111111 111 34677
Q ss_pred CCceEEEecCCe----EEEEecCCCceEEEcCCCCcC-CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecC-Ccc---
Q 005559 142 GNGVVCVTEANR----YFCMADFATMKVCELARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ--- 212 (691)
Q Consensus 142 ~~G~vllt~~~~----~~~v~n~~~~~~~~l~~~~l~-~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~-~~~--- 212 (691)
|.|++++.+.+. +|-+..++..-...+. ++ +.-..|+.+ +||+||..+++-...+.++++|.= |..
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~---i~~~~~~ew~~l--~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFS---ITDNDEAEWTDL--EFSPDGKSILLSTNASFIYLLDAFDGTVKST 224 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEc---cCCCCccceeee--EEcCCCCEEEEEeCCCcEEEEEccCCcEeee
Confidence 899999998764 4444444322222232 21 235679887 599999999888888889998854 333
Q ss_pred -cccC--CCe-eEEEECCCCCEEEEEeeCCeEEEEecCCCCcee
Q 005559 213 -KVDD--TLS-QKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (691)
Q Consensus 213 -~~~~--~~i-~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~ 252 (691)
..+. +.+ ..-+|+|+|+||-+++.||+|.||+-.-+....
T Consensus 225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 1111 212 467899999999999999999999875444433
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.03 E-value=2e-08 Score=107.44 Aligned_cols=220 Identities=17% Similarity=0.154 Sum_probs=160.0
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC-ceeEEEEecCCCCCEEEEEecCCCe--EEEEEeCCeEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVY 111 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-~ll~si~~~~~~~~Iv~~~fs~de~--Lv~v~~DGtV~ 111 (691)
.+.+.+..+|.++|.. | ..+.|+||+..- ..+.++..|+ .++....|+|++. |+.+++|++++
T Consensus 71 v~s~~fR~DG~LlaaG-D-----------~sG~V~vfD~k~r~iLR~~~ah~--apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAG-D-----------ESGHVKVFDMKSRVILRQLYAHQ--APVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred eeEEEeecCCeEEEcc-C-----------CcCcEEEeccccHHHHHHHhhcc--CceeEEEecccCCeEEEecCCCceEE
Confidence 3566677778877754 3 468899999543 3677888888 7899999999766 46799999999
Q ss_pred EEeCCCCeeccccCCCccccccCeEEEEEeC-CceEEEecCC-eEEEEecCC--CceEEEcCCCCcCCCC-ceEEEecCC
Q 005559 112 RYNIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEAN-RYFCMADFA--TMKVCELARPEVEELP-HCVAVIEPK 186 (691)
Q Consensus 112 ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~~-~~~~v~n~~--~~~~~~l~~~~l~~~~-~~w~vi~~~ 186 (691)
+|++.+...+..+..| ++-|.+..+.+ ++-.++|+++ +.+.+|+.. ++....+.. +.| .....+
T Consensus 137 ~~d~s~a~v~~~l~~h----tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh----g~pVe~vl~l--- 205 (487)
T KOG0310|consen 137 YWDLSTAYVQAELSGH----TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH----GCPVESVLAL--- 205 (487)
T ss_pred EEEcCCcEEEEEecCC----cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC----CCceeeEEEc---
Confidence 9999887766677777 67899988887 8999999996 488888865 244444432 223 333333
Q ss_pred cCCCCCeEEEEEeCCeEEEEecC-Ccc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEe-cCCCCceeeccCCCC
Q 005559 187 YTMTGSVEVLIGTDAGILMLDED-GVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN-TNFSSPVIDESCESA 259 (691)
Q Consensus 187 ~S~d~~~~vl~s~d~ti~l~d~~-~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s-sd~~~~l~e~d~~~~ 259 (691)
|+|+.+++++ ++.|++||.. |++ ..|...|+.+.+..+|..|-+++-||.++|++ ++++-+ ..++ -+
T Consensus 206 --psgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv-~s~~--~~ 279 (487)
T KOG0310|consen 206 --PSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV-HSWK--YP 279 (487)
T ss_pred --CCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEE-Eeee--cc
Confidence 5777666554 5569999998 666 34889999999999999999999999999998 444332 2222 23
Q ss_pred CCCCeEEEe-cCceEEEEEcCeEEEEc
Q 005559 260 LPPEQIAWC-GMDSVLLYWNDMLVMVA 285 (691)
Q Consensus 260 ~~p~q~~WC-G~davvl~~~~~l~liG 285 (691)
++..+|+-. |++++|+--.+.+.+++
T Consensus 280 ~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 280 GPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred cceeeEEecCCCceEEEecccceeeee
Confidence 445555554 66777777777666665
No 73
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=3.5e-08 Score=108.15 Aligned_cols=250 Identities=14% Similarity=0.177 Sum_probs=159.4
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCC---eEEEEEeCCeEEEEeCCCCe-eccccCCCccccccCeEE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ---TLICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVE 137 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de---~Lv~v~~DGtV~ly~~~G~~-~~~sl~~~~~~~~~~V~~ 137 (691)
+.|+||++|+. +-....|+.+|. ..|-++.|-+-| -|+++++|-++++||.+-+- .+ ++.+| ...|..
T Consensus 160 sLDrTVKVWslgs~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~-TLeGH----t~Nvs~ 232 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLEGHE--KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ-TLEGH----TNNVSF 232 (794)
T ss_pred eccccEEEEEcCCCCCceeeeccc--cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH-Hhhcc----cccceE
Confidence 37999999995 667888899888 679999999877 58999999999999998654 56 77777 467889
Q ss_pred EEEeCCceEEEecCC-eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeE-------------
Q 005559 138 CVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGI------------- 203 (691)
Q Consensus 138 ~~~~~~G~vllt~~~-~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti------------- 203 (691)
+.|.|.--.++|++. ..+.+|+-...+....-+ . +.-..|+|-.- .++.. |.++.|...
T Consensus 233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn--~-gleRvW~I~~~---k~~~~-i~vG~Deg~i~v~lgreeP~vs 305 (794)
T KOG0276|consen 233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN--Y-GLERVWCIAAH---KGDGK-IAVGFDEGSVTVKLGREEPAVS 305 (794)
T ss_pred EEecCCCcEEEEecCCccEEEecCcceehhhhhh--c-CCceEEEEeec---CCCCe-EEEeccCCcEEEEccCCCCcee
Confidence 899998888888774 477888854443322211 1 33677887421 12222 333322211
Q ss_pred ------EEEecCCcc------------cccCC-----------C----eeEEEECCCCCEEEEEeeCCeEEEEecCCCCc
Q 005559 204 ------LMLDEDGVQ------------KVDDT-----------L----SQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP 250 (691)
Q Consensus 204 ------~l~d~~~~~------------~~~~~-----------~----i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~ 250 (691)
.+|...+.. ...+| . -..++-||||++++..+ ||.-.|+++-
T Consensus 306 Md~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTal---- 380 (794)
T KOG0276|consen 306 MDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTAL---- 380 (794)
T ss_pred ecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEee----
Confidence 112211110 00011 0 13578999999998876 7877777541
Q ss_pred eeeccCCCCCCCCeEEEecCceEEEEE--cCeEEEE---------cCCCCceEeecCCCeEEeecCCceEEEecCcceee
Q 005559 251 VIDESCESALPPEQIAWCGMDSVLLYW--NDMLVMV---------APQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFL 319 (691)
Q Consensus 251 l~e~d~~~~~~p~q~~WCG~davvl~~--~~~l~li---------Gp~~~~v~f~~d~~~~l~~E~DGvRIit~~~~efL 319 (691)
-+..+..+.-..++|..+....... +..+++. .|.. ...+.|.++.+-+-..|++++++=++++|+
T Consensus 381 --a~RnK~fG~~~eFvw~~dsne~avRes~~~vki~knfke~ksi~~~~-~~e~i~gg~Llg~~ss~~~~fydW~~~~lV 457 (794)
T KOG0276|consen 381 --ALRNKAFGSGLEFVWAADSNEFAVRESNGNVKIFKNFKEHKSIRPDM-SAEGIFGGPLLGVRSSDFLCFYDWESGELV 457 (794)
T ss_pred --ehhhcccccceeEEEcCCCCeEEEEecCCceEEEecceecccccccc-ceeeecCCceEEEEeCCeEEEEEcccceEE
Confidence 1111234456788887552221112 2223333 2222 144456677777888899999998889999
Q ss_pred eccchhhhhhcccCC
Q 005559 320 QRVPASTEQIFAIGS 334 (691)
Q Consensus 320 ~~Vp~~~~~If~igS 334 (691)
+|+--...+||..++
T Consensus 458 rrI~v~~k~v~w~d~ 472 (794)
T KOG0276|consen 458 RRIEVTSKHVYWSDN 472 (794)
T ss_pred EEEeeccceeEEecC
Confidence 999888888887665
No 74
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.01 E-value=2.1e-08 Score=102.18 Aligned_cols=185 Identities=14% Similarity=0.256 Sum_probs=130.8
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCC---eEEEEEeCCeEEEEeCCC-CeeccccCCCccccccCeEE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ---TLICVVQDGTVYRYNIHA-ELIEPNASMGKECFEENVVE 137 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de---~Lv~v~~DGtV~ly~~~G-~~~~~sl~~~~~~~~~~V~~ 137 (691)
+.|.+|+||+. .-..++++.-|. |.|.++.|+++- +|+++.+||.|-+|+... ++.. ++..| ...|.+
T Consensus 60 ssDetI~IYDm~k~~qlg~ll~Ha--gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~-slK~H----~~~Vt~ 132 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRKQLGILLSHA--GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK-SLKAH----KGQVTD 132 (362)
T ss_pred CCCCcEEEEeccchhhhcceeccc--cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee-eeccc----ccccce
Confidence 37999999997 456788888887 999999999976 899999999999997742 4455 77777 456999
Q ss_pred EEEeCCceEEEecC-CeEEEEecCCCce---EEEcCCCC-c-----------------------------C--CCC-ceE
Q 005559 138 CVFWGNGVVCVTEA-NRYFCMADFATMK---VCELARPE-V-----------------------------E--ELP-HCV 180 (691)
Q Consensus 138 ~~~~~~G~vllt~~-~~~~~v~n~~~~~---~~~l~~~~-l-----------------------------~--~~~-~~w 180 (691)
+.+.|.|...++-. .++...||+...+ +..|.+.+ + . ..| ...
T Consensus 133 lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l 212 (362)
T KOG0294|consen 133 LSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRIL 212 (362)
T ss_pred eEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccce
Confidence 99999997766644 5677888875321 11111100 0 0 001 011
Q ss_pred EEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEE--ECCCCCEEEEEeeCCeEEEEecCCC-----
Q 005559 181 AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMA--VSPNGNFVACFTHDGRLVVNNTNFS----- 248 (691)
Q Consensus 181 ~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia--~SpnG~~IAl~t~dg~i~I~ssd~~----- 248 (691)
++ + | .+++..+....|.+|.+||.++.. ..|..+|..|+ -.|.+.+|++++.||.|.||..|..
T Consensus 213 ~~-~--~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~ 288 (362)
T KOG0294|consen 213 CA-T--F-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRP 288 (362)
T ss_pred ee-e--e-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCc
Confidence 11 1 1 245566666667889999988543 45788898887 4577889999999999999998876
Q ss_pred CceeeccCCC
Q 005559 249 SPVIDESCES 258 (691)
Q Consensus 249 ~~l~e~d~~~ 258 (691)
+.+.|+|++.
T Consensus 289 ~~l~e~n~~~ 298 (362)
T KOG0294|consen 289 TLLAELNTNV 298 (362)
T ss_pred ceeEEeecCC
Confidence 4567777653
No 75
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.01 E-value=9.7e-09 Score=114.47 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=139.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC----C--CceeEEEEecC-----CCCCEEEEEecCCCeE-EE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS----A--GVLISETVWKN-----PGGRLIGMSWSEDQTL-IC 103 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~----s--G~ll~si~~~~-----~~~~Iv~~~fs~de~L-v~ 103 (691)
+.++.+|+|.-.++.+ .|.+|++|+. + |..-.-+..++ ....|.++.+|||+++ ++
T Consensus 458 Wsi~~~pD~~g~vT~s------------aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 458 WSISLSPDNKGFVTGS------------ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred eeeeecCCCCceEEec------------CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 4566666666666553 7999999984 2 32211122211 1257999999999996 57
Q ss_pred EEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceEEEcCCCCcCCCCceEE
Q 005559 104 VVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVA 181 (691)
Q Consensus 104 v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~ 181 (691)
..=|.||++|-++ -+|.-..++| .-+|....|++++..++|++ .+-+.+|+++-..+.+- ...++.+.++
T Consensus 526 sLLdnTVkVyflDtlKFflsLYGH-----kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS---~fAHdDSvm~ 597 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKFFLSLYGH-----KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS---FFAHDDSVMS 597 (888)
T ss_pred EeccCeEEEEEecceeeeeeeccc-----ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh---hhcccCceeE
Confidence 8889999999764 2443324444 36699999999999999987 56788888763222110 0113356666
Q ss_pred EecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCcee
Q 005559 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (691)
Q Consensus 182 vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~ 252 (691)
| +|-|........+.|+.|+.||-+.-. ..|...+..++++|||.++.+.+.|.+|.+|..+=+..++
T Consensus 598 V---~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~l 670 (888)
T KOG0306|consen 598 V---QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILIL 670 (888)
T ss_pred E---EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceee
Confidence 6 788888888888999999999887443 5688899999999999999999999999999765233333
No 76
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.00 E-value=1e-08 Score=110.06 Aligned_cols=228 Identities=15% Similarity=0.250 Sum_probs=146.1
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEE-e------------cCCCCCEEEEEecCC--C
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETV-W------------KNPGGRLIGMSWSED--Q 99 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~-~------------~~~~~~Iv~~~fs~d--e 99 (691)
...++.||.|++|.++. ..-.++||+.+|..+..+. + |- ..|.+-.|.|+ +
T Consensus 217 i~sl~ys~Tg~~iLvvs------------g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi--a~lt~g~whP~~k~ 282 (641)
T KOG0772|consen 217 INSLQYSVTGDQILVVS------------GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI--AELTCGCWHPDNKE 282 (641)
T ss_pred cceeeecCCCCeEEEEe------------cCcceeEEccCCceeeeeeccchhhhhhhccCCce--eeeeccccccCccc
Confidence 35789999999999986 4567999999998877653 2 33 45788899996 5
Q ss_pred eEEEEEeCCeEEEEeCCCCe--ecc--ccCCCccccccCeEEEEEeCCceEEEecCCe-EEEEecCCCc---eEEEcCCC
Q 005559 100 TLICVVQDGTVYRYNIHAEL--IEP--NASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATM---KVCELARP 171 (691)
Q Consensus 100 ~Lv~v~~DGtV~ly~~~G~~--~~~--sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~-~~~v~n~~~~---~~~~l~~~ 171 (691)
+.++.+.|||+|+|+..-.. ++. +-..+ .....|..|.+.++|..++++=.+ -+++|+..+. -...+.+-
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~--g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A 360 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG--GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA 360 (641)
T ss_pred ceEEecCCCcEEEEecCCchhheeEEeeccCC--CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec
Confidence 67899999999999885322 111 11211 224557889988999887775422 3344443211 01112211
Q ss_pred CcCCCC--ceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc--------cccCCCeeEEEECCCCCEEEEEee-----
Q 005559 172 EVEELP--HCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDTLSQKMAVSPNGNFVACFTH----- 236 (691)
Q Consensus 172 ~l~~~~--~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~--------~~~~~~i~~Ia~SpnG~~IAl~t~----- 236 (691)
+.+ ..-+| .||+||+.++.=+.|+++++||..... -...-+-+..+|||+-++|.+++.
T Consensus 361 ---H~~g~~Itsi---~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 361 ---HLPGQDITSI---SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGM 434 (641)
T ss_pred ---cCCCCceeEE---EeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCC
Confidence 112 33334 599999999999999999999998554 123445678999999999998865
Q ss_pred -CCeEEEEec-CCCCceeeccCCCCCCCCeEEEecCceEEEEEcCe--EEEEcCCCCceEeecC
Q 005559 237 -DGRLVVNNT-NFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDM--LVMVAPQAEPVQYFYD 296 (691)
Q Consensus 237 -dg~i~I~ss-d~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~--l~liGp~~~~v~f~~d 296 (691)
.|++.+++. .|+.++ .+...+-..|.+.|.-. ..++|..+-.+.-+||
T Consensus 435 ~~g~L~f~d~~t~d~v~------------ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 435 TAGTLFFFDRMTLDTVY------------KIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CCceEEEEeccceeeEE------------EecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 356776654 233332 22222555677888742 2444444333444444
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.99 E-value=2e-08 Score=116.40 Aligned_cols=288 Identities=15% Similarity=0.161 Sum_probs=189.2
Q ss_pred cCC-CCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCc-------------eeEEEEecCCCCCEE
Q 005559 26 MRW-KHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-------------LISETVWKNPGGRLI 91 (691)
Q Consensus 26 ~~w-~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~-------------ll~si~~~~~~~~Iv 91 (691)
..| ..-+.+.+.|.++|+|-.+|+... ..|+.+.||+.+-- .+.+..-|. +.|-
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~~~aTgGq----------~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~--~sv~ 73 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGVKFATGGQ----------VLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHD--GSVN 73 (942)
T ss_pred ccccccCCeeEEEEEecCCceeEecCCc----------cccccceeeccccccchhhhhhcccchhheeecccc--Ccee
Confidence 457 333667889999999999988752 36788889986532 345555555 8999
Q ss_pred EEEecCCCe-EEEEEeCCeEEEEeCCC--------C---e-------eccccCCCccccccCeEEEEEeCCceEEEecCC
Q 005559 92 GMSWSEDQT-LICVVQDGTVYRYNIHA--------E---L-------IEPNASMGKECFEENVVECVFWGNGVVCVTEAN 152 (691)
Q Consensus 92 ~~~fs~de~-Lv~v~~DGtV~ly~~~G--------~---~-------~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~ 152 (691)
++-||+||+ |+++++|+.|-+|...+ . . ....+..| +.+|.++.-+++|..+++.+.
T Consensus 74 CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H----~~DV~Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 74 CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH----DSDVLDVNWSPDDSLLVSVSL 149 (942)
T ss_pred EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC----CCccceeccCCCccEEEEecc
Confidence 999999999 57999999999996552 1 0 00123334 677999888889999998774
Q ss_pred -eEEEEecCCCc-eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCC--ccc---------ccCCCe
Q 005559 153 -RYFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG--VQK---------VDDTLS 219 (691)
Q Consensus 153 -~~~~v~n~~~~-~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~--~~~---------~~~~~i 219 (691)
+-+.+||.... +...+.++. +.+..- .|.|-|+..+.-+.|++|++|...+ ... ....-+
T Consensus 150 DnsViiwn~~tF~~~~vl~~H~--s~VKGv-----s~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLRGHQ--SLVKGV-----SWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred cceEEEEccccceeeeeeeccc--ccccce-----EECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence 46666775432 333443211 112222 3558999999999999999999664 221 122348
Q ss_pred eEEEECCCCCEEEEEeeC----CeEEEEecCCCCc------------eeeccC---------CCCCCCCeEEEe-----c
Q 005559 220 QKMAVSPNGNFVACFTHD----GRLVVNNTNFSSP------------VIDESC---------ESALPPEQIAWC-----G 269 (691)
Q Consensus 220 ~~Ia~SpnG~~IAl~t~d----g~i~I~ssd~~~~------------l~e~d~---------~~~~~p~q~~WC-----G 269 (691)
.++++||||++||+.+.- .++.|+..+--+. ...|+. .....|. -..| +
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~-~~y~i~AvgS 301 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPN-CYYCIAAVGS 301 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCC-cceEEEEEec
Confidence 899999999999997652 2566665432111 012220 1111222 1222 6
Q ss_pred CceEEEEEcC----eEEEEc-CCCC---ceEeecCCCeEEeecCCc-eEEEecCcceeeeccchhhhh---hcccCCCCh
Q 005559 270 MDSVLLYWND----MLVMVA-PQAE---PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQ---IFAIGSTSP 337 (691)
Q Consensus 270 ~davvl~~~~----~l~liG-p~~~---~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~~~~---If~igS~~P 337 (691)
.|.-+..|.. .++++= -.+. -++|+.||--.++-..|| |..|.=++-||=..+|+.-.. .++-|...|
T Consensus 302 qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls~ee~~~~~l~~yg~~~~ 381 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALSEEEISELDLSRYGKSRP 381 (942)
T ss_pred CCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccChhhhchhhHHHhcCCch
Confidence 7888888875 222221 1222 478888999999999999 999999999999998876443 445555533
No 78
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.98 E-value=1e-08 Score=109.55 Aligned_cols=236 Identities=14% Similarity=0.197 Sum_probs=166.7
Q ss_pred eeEEEEecCCCCCEEEEEecC-CCeE-EEEEeCCeEEEEeC--CCCeeccccCCCccccccCeEEEEEeCCceEEEecCC
Q 005559 77 LISETVWKNPGGRLIGMSWSE-DQTL-ICVVQDGTVYRYNI--HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN 152 (691)
Q Consensus 77 ll~si~~~~~~~~Iv~~~fs~-de~L-v~v~~DGtV~ly~~--~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~ 152 (691)
++.+..+|. ..|-++.|.| .++| ++.+-||+|+||+. .|++++ +|.+| ...|.+++++..|.-+++.+.
T Consensus 206 ~~~~~~gH~--kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr-tf~gH----~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 206 LSHNLSGHT--KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR-TFKGH----RKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred heeeccCCc--cccchhhhccceeeEEEecCCCceEEEEEEecCcceeh-hhhcc----hhhhhhhhccccCCeeeeeec
Confidence 344455555 5688999999 7887 58999999999987 477888 77777 467999999999999999996
Q ss_pred e-EEEEecCCCceE-EEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEe-CCeEEEEecCCcc-----cccCCCeeEEEE
Q 005559 153 R-YFCMADFATMKV-CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ-----KVDDTLSQKMAV 224 (691)
Q Consensus 153 ~-~~~v~n~~~~~~-~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~~~~-----~~~~~~i~~Ia~ 224 (691)
+ +..+|+.+..+. .++.. ...|.| | .|-||++.+++++. |+.|..||..... .-|-++|..|.|
T Consensus 279 D~~lKlwDtETG~~~~~f~~---~~~~~c--v---kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFHL---DKVPTC--V---KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred ceeeeeeccccceEEEEEec---CCCcee--e---ecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 5 778899885543 33431 122443 3 46688866666665 8899999988554 458899999999
Q ss_pred CCCCCEEEEEeeCCeEEEEecCCCCce---eeccCCC----CCCCCeEEEe---cCceEEEEEc-------CeEEEEcCC
Q 005559 225 SPNGNFVACFTHDGRLVVNNTNFSSPV---IDESCES----ALPPEQIAWC---GMDSVLLYWN-------DMLVMVAPQ 287 (691)
Q Consensus 225 SpnG~~IAl~t~dg~i~I~ssd~~~~l---~e~d~~~----~~~p~q~~WC---G~davvl~~~-------~~l~liGp~ 287 (691)
=|+|+.-++.++++++.||..+-.-.+ .+...++ ...|.+=..| =++.+++.=- ..=.+-|+.
T Consensus 351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 999999999999999999975422211 1111110 1122221112 2344444211 111334443
Q ss_pred ----CCceEeecCCCeEEeecCCc-eEEEecCcceeeeccchhhh
Q 005559 288 ----AEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTE 327 (691)
Q Consensus 288 ----~~~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~~~ 327 (691)
+-.+.|++|+..++...-|| +-+|.-+.+.++.+.+.+.+
T Consensus 431 vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~ 475 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ 475 (503)
T ss_pred ccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc
Confidence 33799999999999999999 99999999999999988744
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.98 E-value=4.8e-08 Score=103.16 Aligned_cols=171 Identities=11% Similarity=0.144 Sum_probs=131.2
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEE-EEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEe
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv-~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~ 141 (691)
.|.++-+|+. +++++.++++|. -.|.++-|.++..++ +.+.|-.+++|+..-.-.......+ +..|......
T Consensus 239 ~d~~av~~d~~s~q~l~~~~Gh~--kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h----~~~V~~ls~h 312 (506)
T KOG0289|consen 239 EDKTAVLFDKPSNQILATLKGHT--KKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPH----EEPVTGLSLH 312 (506)
T ss_pred CCCceEEEecchhhhhhhccCcc--eEEEEEEeccchhheeecCCcceEEeeccccccCccccccc----cccceeeeec
Confidence 5768888885 789999999998 789999999998875 8999999999976433233244444 6789999999
Q ss_pred CCceEEEecCC-eEEEEecCCCce-EEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cc
Q 005559 142 GNGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KV 214 (691)
Q Consensus 142 ~~G~vllt~~~-~~~~v~n~~~~~-~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~ 214 (691)
++|--++.+++ ..|.+.++.... .....+ ..+.-.+-.-.|.|||-...+...|+.|.+||..+.. +.
T Consensus 313 ~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-----~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 313 PTGEYLLSASNDGTWAFSDISSGSQLTVVSD-----ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred cCCcEEEEecCCceEEEEEccCCcEEEEEee-----ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence 99988888775 467777766433 222222 0111112222477899999999999999999988655 57
Q ss_pred cCCCeeEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 215 ~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
|.+||..|+||-||=++|+.++||.+++|+-
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 9999999999999999999999999999964
No 80
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.7e-08 Score=107.20 Aligned_cols=250 Identities=15% Similarity=0.176 Sum_probs=163.9
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCe
Q 005559 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (691)
Q Consensus 32 ~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGt 109 (691)
||....+.-| .++.+|++- ...|.+|+. +|....-...+. +.|.++.|+++|. |+++..+|+
T Consensus 177 DfY~nlldWs-s~n~laVal-------------g~~vylW~~~s~~v~~l~~~~~--~~vtSv~ws~~G~~LavG~~~g~ 240 (484)
T KOG0305|consen 177 DFYLNLLDWS-SANVLAVAL-------------GQSVYLWSASSGSVTELCSFGE--ELVTSVKWSPDGSHLAVGTSDGT 240 (484)
T ss_pred cHhhhHhhcc-cCCeEEEEe-------------cceEEEEecCCCceEEeEecCC--CceEEEEECCCCCEEEEeecCCe
Confidence 4555555556 566888874 578999997 677555555544 7899999999988 679999999
Q ss_pred EEEEeCCCC-eeccccCC-CccccccCeEEEEEeCCceEEEecCCe-EEEEecCCCc--eEEEcCCCCcCCCCceEEEec
Q 005559 110 VYRYNIHAE-LIEPNASM-GKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATM--KVCELARPEVEELPHCVAVIE 184 (691)
Q Consensus 110 V~ly~~~G~-~~~~sl~~-~~~~~~~~V~~~~~~~~G~vllt~~~~-~~~v~n~~~~--~~~~l~~~~l~~~~~~w~vi~ 184 (691)
|.|||..-. ..+ .+.. | ... +.+.-|. +.++.++++. -+...++..+ ....+. ++...-|-+
T Consensus 241 v~iwD~~~~k~~~-~~~~~h----~~r-vg~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~-----~H~qeVCgL- 307 (484)
T KOG0305|consen 241 VQIWDVKEQKKTR-TLRGSH----ASR-VGSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQ-----GHRQEVCGL- 307 (484)
T ss_pred EEEEehhhccccc-cccCCc----Cce-eEEEecc-CceEEEecCCCcEEEEEEecchhhhhhhh-----cccceeeee-
Confidence 999998533 334 4433 4 222 3444576 5555555543 2222232111 111111 222222333
Q ss_pred CCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCC-CEEEEEe--eCCeEEEEecCCCCceeeccC
Q 005559 185 PKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNG-NFVACFT--HDGRLVVNNTNFSSPVIDESC 256 (691)
Q Consensus 185 ~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG-~~IAl~t--~dg~i~I~ssd~~~~l~e~d~ 256 (691)
.+++|+...+..+.|+.+.+||..... ..|.+.|..|+++|-- ..||+++ .|++|++|+...+..+...|+
T Consensus 308 -kws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt 386 (484)
T KOG0305|consen 308 -KWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT 386 (484)
T ss_pred -EECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc
Confidence 367899999999999999999996544 4688999999999954 4888864 589999999998888888887
Q ss_pred CCCCCCCeEEEe------------c-CceEEEEEcC---eEEEEcCCCC--ceEeecCCCeEEeecCCc-eEEEec
Q 005559 257 ESALPPEQIAWC------------G-MDSVLLYWND---MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSN 313 (691)
Q Consensus 257 ~~~~~p~q~~WC------------G-~davvl~~~~---~l~liGp~~~--~v~f~~d~~~~l~~E~DG-vRIit~ 313 (691)
.+ ..-.|.|. + ++..+..|.. ...|-||..- +...++|+..+++.--|. +|.|.-
T Consensus 387 gs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 387 GS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred CC--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 65 67789997 1 2223333332 4456677664 455556666666666666 666653
No 81
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.98 E-value=3.3e-09 Score=107.89 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=129.4
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
+.|.+++|-.. +|+.+..+++|+ .-|...-|++||+ ++++++||||++|+. .++.+. +|....+ +..|..+.
T Consensus 325 sfD~tvRiHGlKSGK~LKEfrGHs--Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~-Tfk~~~~--d~~vnsv~ 399 (508)
T KOG0275|consen 325 SFDQTVRIHGLKSGKCLKEFRGHS--SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLS-TFKPLGT--DYPVNSVI 399 (508)
T ss_pred cccceEEEeccccchhHHHhcCcc--ccccceEEcCCCCeEEEecCCccEEEecCcchhhhh-hccCCCC--cccceeEE
Confidence 37999999996 899999999999 7899999999998 578999999999987 467776 4443322 56688877
Q ss_pred EeC---CceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecC-Ccc---
Q 005559 140 FWG---NGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ--- 212 (691)
Q Consensus 140 ~~~---~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~-~~~--- 212 (691)
+.| .-+++...++.+|.+ |..+.-++.+..-.-.+..-.-++ .||.|..+--++.|+.+|.++.. |..
T Consensus 400 ~~PKnpeh~iVCNrsntv~im-n~qGQvVrsfsSGkREgGdFi~~~----lSpkGewiYcigED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 400 LLPKNPEHFIVCNRSNTVYIM-NMQGQVVRSFSSGKREGGDFINAI----LSPKGEWIYCIGEDGVLYCFSVLSGKLERT 474 (508)
T ss_pred EcCCCCceEEEEcCCCeEEEE-eccceEEeeeccCCccCCceEEEE----ecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence 764 445555555555544 777777777753111011122233 45789999999999999999866 333
Q ss_pred -cccCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 213 -KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 213 -~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
..|..-+..++-.|..+.||++++||.+++|.
T Consensus 475 l~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 475 LPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eecccccccccccCcccchhhhhcccchhhhcC
Confidence 56777888999999999999999999999884
No 82
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.97 E-value=1.1e-08 Score=107.47 Aligned_cols=188 Identities=12% Similarity=0.114 Sum_probs=124.4
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
+.++..++|+- ++++..++.+|+ +.|.++.|...+. .|.++.|.|+++||++ +...+..++.. .+.++.
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHt--dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S------~cnDI~ 309 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHT--DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS------QCNDIV 309 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccc--cceeeehhhccccceeeccccchhhhhhhhhhheeccccccc------cccceE
Confidence 47899999995 799999999999 9999999998766 6789999999999996 44555444432 122222
Q ss_pred EeCCceEEEecCC-eEEEEecCCCceEE-EcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----
Q 005559 140 FWGNGVVCVTEAN-RYFCMADFATMKVC-ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----- 212 (691)
Q Consensus 140 ~~~~G~vllt~~~-~~~~v~n~~~~~~~-~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----- 212 (691)
.. +..++++-. .-+..|+..++.+. ..+ +++...+. +.|++|.-+...+.|+++.++|..+..
T Consensus 310 ~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~---~gg~vtSl-----~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~ 379 (459)
T KOG0288|consen 310 CS--ISDVISGHFDKKVRFWDIRSADKTRSVP---LGGRVTSL-----DLSMDGLELLSSSRDDTLKVIDLRTKEIRQTF 379 (459)
T ss_pred ec--ceeeeecccccceEEEeccCCceeeEee---cCcceeeE-----eeccCCeEEeeecCCCceeeeecccccEEEEe
Confidence 11 333333221 23455565444322 222 21223333 345677777777779999999988665
Q ss_pred ---c-ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCC---CCCCCeEEEecC
Q 005559 213 ---K-VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES---ALPPEQIAWCGM 270 (691)
Q Consensus 213 ---~-~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~---~~~p~q~~WCG~ 270 (691)
. -...-|+++.|||+|.++|.++.||.++||+.+-+++ |+-... ......++||+.
T Consensus 380 sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl--E~~l~~s~s~~aI~s~~W~~s 442 (459)
T KOG0288|consen 380 SAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL--EKVLSLSTSNAAITSLSWNPS 442 (459)
T ss_pred eccccccccccceeEECCCCceeeeccCCCcEEEEEccCceE--EEEeccCCCCcceEEEEEcCC
Confidence 0 1223499999999999999999999999998764433 333211 113467778753
No 83
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.97 E-value=1.4e-08 Score=114.40 Aligned_cols=217 Identities=16% Similarity=0.225 Sum_probs=142.9
Q ss_pred ccccccccEEEecccccccCC---------------CCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEc
Q 005559 8 AEWQLVYNRYYRKPELYQMRW---------------KHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN 72 (691)
Q Consensus 8 ~~W~~l~~~~yr~~~~y~~~w---------------~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys 72 (691)
.+|..+--.-.-++.+|+.+| ++.|..-..|+++++|...-+.. +.++|.+||
T Consensus 409 ~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~------------S~G~Id~fN 476 (910)
T KOG1539|consen 409 KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY------------SKGTIDRFN 476 (910)
T ss_pred hhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec------------cCCeEEEEE
Confidence 467766556666666776555 11344556788899887655442 689999999
Q ss_pred C-CCceeEEE---EecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEe-CCceE
Q 005559 73 S-AGVLISET---VWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW-GNGVV 146 (691)
Q Consensus 73 ~-sG~ll~si---~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~-~~G~v 146 (691)
. +|-.-.++ +.|. +.|.+++-..-.+ +|+.+.+|.++.||..++.+..++..+.. +..+.-. ..|++
T Consensus 477 mQSGi~r~sf~~~~ah~--~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~-----~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHK--GEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS-----ITGIVYHRVSDLL 549 (910)
T ss_pred cccCeeecccccCcccc--CceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC-----cceeeeeehhhhh
Confidence 7 67777777 4566 7899998876555 57899999999999987654436554422 2222212 24444
Q ss_pred EEe-cCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCeeE
Q 005559 147 CVT-EANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQK 221 (691)
Q Consensus 147 llt-~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~ 221 (691)
++. .+..+..++...-.-.+.+... +.....+ .|||||..++.++.|++|.+||.-... -.-..|.+.
T Consensus 550 a~~~ddf~I~vvD~~t~kvvR~f~gh--~nritd~-----~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~s 622 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVVREFWGH--GNRITDM-----TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTS 622 (910)
T ss_pred hhhcCceeEEEEEchhhhhhHHhhcc--ccceeee-----EeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCccee
Confidence 333 3334444433211222333210 0112333 589999999999999999999976443 345688999
Q ss_pred EEECCCCCEEEEEeeC-CeEEEEec--CCCCc
Q 005559 222 MAVSPNGNFVACFTHD-GRLVVNNT--NFSSP 250 (691)
Q Consensus 222 Ia~SpnG~~IAl~t~d-g~i~I~ss--d~~~~ 250 (691)
|++||||++||+...| .-|.+|+. -|...
T Consensus 623 ls~SPngD~LAT~Hvd~~gIylWsNkslF~~v 654 (910)
T KOG1539|consen 623 LSFSPNGDFLATVHVDQNGIYLWSNKSLFKSV 654 (910)
T ss_pred eEECCCCCEEEEEEecCceEEEEEchhHheec
Confidence 9999999999999988 45777764 35444
No 84
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.97 E-value=2.5e-08 Score=110.50 Aligned_cols=226 Identities=16% Similarity=0.160 Sum_probs=163.1
Q ss_pred ccccccEEEecccccc-cCCCCcCCCCCEEEEc-CCCCeEEEEecCchhhhhhcccCCCeEEEEcCC-CceeEEEEecCC
Q 005559 10 WQLVYNRYYRKPELYQ-MRWKHIDLSRNKVACA-PFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNP 86 (691)
Q Consensus 10 W~~l~~~~yr~~~~y~-~~w~~~~l~~~~vA~s-p~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-G~ll~si~~~~~ 86 (691)
|.+-++.|-....+|. ..| +..+ +... .++|.|.+.+ .|.+|.+|..+ +.++.++.+|+
T Consensus 40 w~~~~~~~l~~~~~~~~~g~--i~~~---i~y~e~~~~~l~~g~------------~D~~i~v~~~~~~~P~~~LkgH~- 101 (745)
T KOG0301|consen 40 WAKKGKQYLETHAFEGPKGF--IANS---ICYAESDKGRLVVGG------------MDTTIIVFKLSQAEPLYTLKGHK- 101 (745)
T ss_pred eeccCcccccceecccCcce--eecc---ceeccccCcceEeec------------ccceEEEEecCCCCchhhhhccc-
Confidence 7777776666555553 334 1111 2222 4666676665 68999999975 68999999999
Q ss_pred CCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceE
Q 005559 87 GGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKV 165 (691)
Q Consensus 87 ~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~ 165 (691)
..|-+++--.++.+++.+-|.|+++|.. |++.. ++..| +..|+.+++.+.+ .++|++ .+...+|+- +...
T Consensus 102 -snVC~ls~~~~~~~iSgSWD~TakvW~~-~~l~~-~l~gH----~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~~l 172 (745)
T KOG0301|consen 102 -SNVCSLSIGEDGTLISGSWDSTAKVWRI-GELVY-SLQGH----TASVWAVASLPEN-TYVTGSADKTIKLWKG-GTLL 172 (745)
T ss_pred -cceeeeecCCcCceEecccccceEEecc-hhhhc-ccCCc----chheeeeeecCCC-cEEeccCcceeeeccC-Cchh
Confidence 8999999887888999999999999965 34444 56667 6779999999988 666655 567777775 4445
Q ss_pred EEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEeeCCeEE
Q 005559 166 CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLV 241 (691)
Q Consensus 166 ~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~ 241 (691)
..|..+. .-.+..+++ ++...+..+.|+.|.+|+.+|.. ..|..-+..|+..++++.|++.++|++++
T Consensus 173 ~tf~gHt--D~VRgL~vl------~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 173 KTFSGHT--DCVRGLAVL------DDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred hhhccch--hheeeeEEe------cCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 5565310 115667776 45567888999999999997654 45777788999889999999999999999
Q ss_pred EEecCCCCceeeccCCCCCCCCeEEEe------------cCceEEEEE
Q 005559 242 VNNTNFSSPVIDESCESALPPEQIAWC------------GMDSVLLYW 277 (691)
Q Consensus 242 I~ssd~~~~l~e~d~~~~~~p~q~~WC------------G~davvl~~ 277 (691)
||..+ .+... -.-|..=.|| |+|.+|-.|
T Consensus 245 iW~~~--e~~q~-----I~lPttsiWsa~~L~NgDIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 245 IWKKD--ECVQV-----ITLPTTSIWSAKVLLNGDIVVGGSDGRVRVF 285 (745)
T ss_pred EeecC--ceEEE-----EecCccceEEEEEeeCCCEEEeccCceEEEE
Confidence 99877 22222 1246666687 677777666
No 85
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.95 E-value=8.4e-09 Score=108.07 Aligned_cols=169 Identities=12% Similarity=0.081 Sum_probs=127.1
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCC-CeEEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEE
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED-QTLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVF 140 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~d-e~Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~ 140 (691)
.|++|+||+. .++.=..+.+|. -.|.++.|-|. +.+++.+.|..|++||+ .|+.+. ++..| ...|..++|
T Consensus 200 dDg~ikiWdf~~~kee~vL~GHg--wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~-tlh~H----KntVl~~~f 272 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKEERVLRGHG--WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA-TLHGH----KNTVLAVKF 272 (464)
T ss_pred CCCeEEEEeccCCchhheeccCC--CCcceeccCCccceeEEccCCceeEeecCCCcchhh-hhhhc----cceEEEEEE
Confidence 5899999996 577777788876 67999999997 55578999999999999 588887 66666 577999999
Q ss_pred eCCceEEEecCCe-EEEEecCCC-ceEEEcCCCCcCCCCceEEEecCCcCC-CCCeEEEEEeCCeEEEEecCCcc-----
Q 005559 141 WGNGVVCVTEANR-YFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYTM-TGSVEVLIGTDAGILMLDEDGVQ----- 212 (691)
Q Consensus 141 ~~~G~vllt~~~~-~~~v~n~~~-~~~~~l~~~~l~~~~~~w~vi~~~~S~-d~~~~vl~s~d~ti~l~d~~~~~----- 212 (691)
.++|-.++|.+.+ ...+-++.. ..+..+.. +....|++ .++| ..++.++.+.|+.|+.|......
T Consensus 273 ~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~----Hkkdv~~~---~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 273 NPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG----HKKDVTSL---TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI 345 (464)
T ss_pred cCCCCeeEEccCCceEEEEehhHhHHHHHhhc----chhhheee---ccccccccceeeccCCCceEEEeccccccccCC
Confidence 9999999998854 444444431 11112221 22344444 2222 45677888889999999888333
Q ss_pred -cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 213 -KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 213 -~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
..|.+.|..|+..|=|.++|+++.|.+++.|+..
T Consensus 346 ~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 346 PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred CcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 4588899999999999999999999999999753
No 86
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=4.6e-08 Score=104.09 Aligned_cols=159 Identities=17% Similarity=0.195 Sum_probs=121.9
Q ss_pred CCCEEEEEecCCCeE-EEEEeCCeEEEEeCCCCeecc--ccCCCccccccCeEEEEEeCCce-EEEecCC-eEEEEecCC
Q 005559 87 GGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAELIEP--NASMGKECFEENVVECVFWGNGV-VCVTEAN-RYFCMADFA 161 (691)
Q Consensus 87 ~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G~~~~~--sl~~~~~~~~~~V~~~~~~~~G~-vllt~~~-~~~~v~n~~ 161 (691)
.+.|.+|.|-|.-.| ++++-||++++|-++|+.... ++... ...|..|.|.++|. ++++++. .+++.||+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~----~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE----KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec----cCccceeeecCCCceEEEecccceEEEEeecc
Confidence 368999999999885 689999999999999985431 32222 56799999999998 8888775 577889998
Q ss_pred CceEEEcCCCCcCCC--CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEe
Q 005559 162 TMKVCELARPEVEEL--PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFT 235 (691)
Q Consensus 162 ~~~~~~l~~~~l~~~--~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t 235 (691)
..++.++..+...+. .+...| |++++.+++.+..|-|+++...... --..|.+..++||.+|+.|-..+
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeV-----Shd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEV-----SHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred ccccccccCCCCcccchhheeEe-----cCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc
Confidence 877777764322122 233333 6799999999999999999887655 22568899999999999998888
Q ss_pred eCCeEEEEecCCCCceeec
Q 005559 236 HDGRLVVNNTNFSSPVIDE 254 (691)
Q Consensus 236 ~dg~i~I~ssd~~~~l~e~ 254 (691)
.+|.+|+|+..-..++..|
T Consensus 364 ~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 364 GTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred CCceEEEEecCCcceEEEE
Confidence 9999999986544444443
No 87
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.94 E-value=3.4e-08 Score=108.61 Aligned_cols=243 Identities=13% Similarity=0.111 Sum_probs=150.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVY 111 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ 111 (691)
..+-+|+.|+|..+.++ .+..+-||+. +|.++.++++|. +.|.+++|+.||++ .++++|..|.
T Consensus 14 ci~d~afkPDGsqL~lA-------------Ag~rlliyD~ndG~llqtLKgHK--DtVycVAys~dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-------------AGSRLLVYDTSDGTLLQPLKGHK--DTVYCVAYAKDGKRFASGSADKSVI 78 (1081)
T ss_pred chheeEECCCCceEEEe-------------cCCEEEEEeCCCccccccccccc--ceEEEEEEccCCceeccCCCceeEE
Confidence 56789999999999887 4677999995 799999999999 89999999999997 5899999999
Q ss_pred EEeCCCC-eeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCC
Q 005559 112 RYNIHAE-LIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (691)
Q Consensus 112 ly~~~G~-~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d 190 (691)
+|+.+-| .++++ +. +.|....|.|-...+++-+-.-+-+|+-+...+.+.. ....+-+. +++.|
T Consensus 79 ~W~~klEG~LkYS--H~-----D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~k-----ss~R~~~C---sWtnD 143 (1081)
T KOG1538|consen 79 IWTSKLEGILKYS--HN-----DAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHK-----SSSRIICC---SWTND 143 (1081)
T ss_pred Eecccccceeeec--cC-----CeeeEeecCchHHHhhhcchhhccccChhhhhHHhhh-----hheeEEEe---eecCC
Confidence 9988533 23333 22 3355556667666666655433344443322221111 11222222 46679
Q ss_pred CCeEEEEEeCCeEEEEecCCcc-------cccCCCeeEEEECCCCC-----EEEEEeeCCeEEEEecCCCCc-----eee
Q 005559 191 GSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGN-----FVACFTHDGRLVVNNTNFSSP-----VID 253 (691)
Q Consensus 191 ~~~~vl~s~d~ti~l~d~~~~~-------~~~~~~i~~Ia~SpnG~-----~IAl~t~dg~i~I~ssd~~~~-----l~e 253 (691)
|+..++.-.+|||-+-+..|.. ...+.||.+|+++|+.- .+|...-..|+-..+-+ ++. -++
T Consensus 144 GqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~ 222 (1081)
T KOG1538|consen 144 GQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALN 222 (1081)
T ss_pred CcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCC
Confidence 9999998889999888777654 35778999999999853 45554444454444333 211 234
Q ss_pred ccCCCCCCCCeEEEe---cCceEEEEEcCeEEEEcCCC---C---ceEeecCCCeEEeecCCc
Q 005559 254 ESCESALPPEQIAWC---GMDSVLLYWNDMLVMVAPQA---E---PVQYFYDEPLVLIPECDG 307 (691)
Q Consensus 254 ~d~~~~~~p~q~~WC---G~davvl~~~~~l~liGp~~---~---~v~f~~d~~~~l~~E~DG 307 (691)
||...-+-...-.+| |.|..+-.+..+=...|.-| . +|.--+++..+.+...||
T Consensus 223 FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 223 FDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred CCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccC
Confidence 442211111112222 56665554443222223322 2 234445677777777787
No 88
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.93 E-value=2.8e-08 Score=98.32 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=153.5
Q ss_pred CCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEeCCceEEEecC
Q 005559 74 AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA 151 (691)
Q Consensus 74 sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~ 151 (691)
.|..|.++.+|. |.|.+-....|-.. .++..|=|-++||. .|..+. +|.+. .=|..|.|..+---++|+.
T Consensus 48 tgdwigtfeghk--gavw~~~l~~na~~aasaaadftakvw~a~tgdelh-sf~hk-----hivk~~af~~ds~~lltgg 119 (334)
T KOG0278|consen 48 TGDWIGTFEGHK--GAVWSATLNKNATRAASAAADFTAKVWDAVTGDELH-SFEHK-----HIVKAVAFSQDSNYLLTGG 119 (334)
T ss_pred CCCcEEeeeccC--cceeeeecCchhhhhhhhcccchhhhhhhhhhhhhh-hhhhh-----heeeeEEecccchhhhccc
Confidence 688999999999 99988877766665 58999999999976 787766 66543 3377889999998999988
Q ss_pred Ce-EEEEecCCCc--eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCeeEEEE
Q 005559 152 NR-YFCMADFATM--KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAV 224 (691)
Q Consensus 152 ~~-~~~v~n~~~~--~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~ 224 (691)
+. +..|-+.+.| .+..+...+-.-..-.|+- ..+.++..+.|+||.+||...-. -..+.|++++-+
T Consensus 120 ~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-------eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEv 192 (334)
T KOG0278|consen 120 QEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-------EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEV 192 (334)
T ss_pred hHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-------cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceee
Confidence 63 4444443322 1333332111011234542 55666666889999999987443 346789999999
Q ss_pred CCCCCEEEEEeeCCeEEEEecCCCCceeeccC-----CCCCCC-CeEEEec-CceEEEEEc----CeEE--EEcCCCC--
Q 005559 225 SPNGNFVACFTHDGRLVVNNTNFSSPVIDESC-----ESALPP-EQIAWCG-MDSVLLYWN----DMLV--MVAPQAE-- 289 (691)
Q Consensus 225 SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~-----~~~~~p-~q~~WCG-~davvl~~~----~~l~--liGp~~~-- 289 (691)
|++|++|-+.- -+.|..|+.+-=..+.+|+. ..+..| +.+-=|| +|.-+-.|+ .++- ..|+.|-
T Consensus 193 s~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 193 SQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH 271 (334)
T ss_pred ccCCCEEEEec-CceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE
Confidence 99998877654 45677787653344445541 112234 3455574 555555453 2333 4688775
Q ss_pred ceEeecCCCeEEeecCCc-eEEEecC
Q 005559 290 PVQYFYDEPLVLIPECDG-VRILSNS 314 (691)
Q Consensus 290 ~v~f~~d~~~~l~~E~DG-vRIit~~ 314 (691)
.|+|++|+..+.+...|| ||||-.+
T Consensus 272 cVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred EEEECCCCceeeccCCCceEEEEEec
Confidence 899999999999999999 9999765
No 89
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.92 E-value=7.2e-08 Score=97.84 Aligned_cols=253 Identities=10% Similarity=0.064 Sum_probs=175.2
Q ss_pred eeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCeecc-ccCCCccccccCeEEEEEeCCceEEEecC-Ce
Q 005559 77 LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEP-NASMGKECFEENVVECVFWGNGVVCVTEA-NR 153 (691)
Q Consensus 77 ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~~~~-sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~ 153 (691)
++-.+++|. |.|..+.|+|+|. +++.+.|..|.+|+..|+...+ .+..| .+.|.++.+..+|-.+++.+ .+
T Consensus 39 p~m~l~gh~--geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgH----sgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 39 PIMLLPGHK--GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGH----SGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred hhhhcCCCc--ceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccc----cceeEeeeeccCCCEEEEecCCc
Confidence 445567777 8999999999988 5789999999999999876443 23344 57799999999888877755 56
Q ss_pred EEEEecCC-CceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCeeEEEECCCC
Q 005559 154 YFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNG 228 (691)
Q Consensus 154 ~~~v~n~~-~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG 228 (691)
.+..|+.+ +.+.++++ .+..+.++++|.- -.-+++...+.|+|+++||..... ....-+++++.|.-.+
T Consensus 113 ~v~~wD~~tG~~~rk~k-----~h~~~vNs~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s 186 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKHK-----GHTSFVNSLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTS 186 (338)
T ss_pred eEEEEecccceeeehhc-----cccceeeecCccc-cCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccc
Confidence 77778877 45555555 3456777776531 122345556669999999998554 2345678999999999
Q ss_pred CEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEe---------cCceEEEEEcC---------eEEEEcCCC--
Q 005559 229 NFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC---------GMDSVLLYWND---------MLVMVAPQA-- 288 (691)
Q Consensus 229 ~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC---------G~davvl~~~~---------~l~liGp~~-- 288 (691)
..+-++.-|+.|++|+---.+.+.....+ ..+...|.=. +-|+.+..|+- ...+.|+.-
T Consensus 187 ~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 187 DQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred cceeeccccCceeeeccccCcceEEeecc-cCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 99999999999999975212222222222 2223333222 45788888862 234445422
Q ss_pred ----CceEeecCCCeEEeecCCc-eEEEecCcceeeeccchhhhhhcccCCCChhhHHH
Q 005559 289 ----EPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLY 342 (691)
Q Consensus 289 ----~~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~~~~If~igS~~Pga~L~ 342 (691)
-+..+++++.-+-....|- +-||.+..-.++.+.|.+...|-.+.+-+--.+|+
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iil 324 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIIL 324 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEE
Confidence 1677777777777777776 99999999999999999998877665544333333
No 90
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.92 E-value=2.6e-08 Score=103.11 Aligned_cols=259 Identities=15% Similarity=0.151 Sum_probs=173.9
Q ss_pred CeEEEEecCchhhhhhcccCCCeEEEEcCC-CceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccc
Q 005559 45 GPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPN 123 (691)
Q Consensus 45 G~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-G~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~s 123 (691)
|.=+++++|.++..+..++.|+.|+|||.+ -+.+.++.-|. |-|.+++++. +..+++++|.||+.|.+.|...+ +
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~--G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~p~~-t 143 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE--GLVRGICVTQ-TSFFTVGDDKTVKQWKIDGPPLH-T 143 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc--CceeeEEecc-cceEEecCCcceeeeeccCCcce-e
Confidence 445677888887777667789999999975 57889999998 9999999996 88999999999999999997655 4
Q ss_pred cCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCC-eEEEEEeCCe
Q 005559 124 ASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGS-VEVLIGTDAG 202 (691)
Q Consensus 124 l~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~-~~vl~s~d~t 202 (691)
+.+ +..+.++.-...+-+++|. |..+.+|+..-. ..+..... +-++.-++ .|+|-.. +++..+.|++
T Consensus 144 ilg-----~s~~~gIdh~~~~~~FaTc-Ge~i~IWD~~R~--~Pv~smsw-G~Dti~sv---kfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 144 ILG-----KSVYLGIDHHRKNSVFATC-GEQIDIWDEQRD--NPVSSMSW-GADSISSV---KFNPVETSILASCASDRS 211 (433)
T ss_pred eec-----ccccccccccccccccccc-CceeeecccccC--Cccceeec-CCCceeEE---ecCCCcchheeeeccCCc
Confidence 433 2345554443344444444 444566664311 11111112 22322233 4665443 4455557999
Q ss_pred EEEEecCCcccc----cCCCeeEEEECCCCCEEEEEeeCCeEEEEec-CCCCceeeccCCCCCCCCeEEEe--cCceEEE
Q 005559 203 ILMLDEDGVQKV----DDTLSQKMAVSPNGNFVACFTHDGRLVVNNT-NFSSPVIDESCESALPPEQIAWC--GMDSVLL 275 (691)
Q Consensus 203 i~l~d~~~~~~~----~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss-d~~~~l~e~d~~~~~~p~q~~WC--G~davvl 275 (691)
|+++|......+ ..-.=..|+++|++-....+++|-.++..+. .+++.+.-|..+ -+...++.+. |.+-|.-
T Consensus 212 IvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred eEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEeccCCCcchhccc
Confidence 999998855411 1223357999998866777788888776542 334444434333 2244566665 8888888
Q ss_pred EEcCeEEEEcCCCC---------------ceEeecCCCeEEeecCCc-eEEEecCcceeee
Q 005559 276 YWNDMLVMVAPQAE---------------PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQ 320 (691)
Q Consensus 276 ~~~~~l~liGp~~~---------------~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~ 320 (691)
+++..+.+++-+.. .|+|+-|+..+++..=|| ||+|-....|=|.
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 89999988875432 489999999999999999 9999988655543
No 91
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.6e-08 Score=106.68 Aligned_cols=188 Identities=15% Similarity=0.187 Sum_probs=133.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEc-CCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRY 113 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys-~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly 113 (691)
..||++++|+.+|+.. .|+++|||+ ++=+.+....-|+ +.|-++.||||++ |+.++.| ..+||
T Consensus 148 k~vaf~~~gs~latgg------------~dg~lRv~~~Ps~~t~l~e~~~~--~eV~DL~FS~dgk~lasig~d-~~~VW 212 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG------------TDGTLRVWEWPSMLTILEEIAHH--AEVKDLDFSPDGKFLASIGAD-SARVW 212 (398)
T ss_pred eEEEEcCCCCEeeecc------------ccceEEEEecCcchhhhhhHhhc--CccccceeCCCCcEEEEecCC-ceEEE
Confidence 6899999999999985 699999999 8988888888777 8999999999998 5689999 79999
Q ss_pred eC-CCCeeccccCCCccccccCeEEEEEeCCc----eEEEecCC--eEEEEecC---CCceEEEcCCCC-cCCCCceEEE
Q 005559 114 NI-HAELIEPNASMGKECFEENVVECVFWGNG----VVCVTEAN--RYFCMADF---ATMKVCELARPE-VEELPHCVAV 182 (691)
Q Consensus 114 ~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G----~vllt~~~--~~~~v~n~---~~~~~~~l~~~~-l~~~~~~w~v 182 (691)
+. .|..++ ..+.. .++.....|+|..++ +.+++... ..+..++. .....-++...- -....++++|
T Consensus 213 ~~~~g~~~a-~~t~~--~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 213 SVNTGAALA-RKTPF--SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred EeccCchhh-hcCCc--ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 88 575544 22211 013445677887533 44444332 11111111 111111111100 0023678887
Q ss_pred ecCCcCCCCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 183 IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 183 i~~~~S~d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
|++|...++.+.+|.|-+++....+ +.|.+-|+.+.|||+-+.++..+.+.+..|.+..
T Consensus 290 -----S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 290 -----SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred -----cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 5799999999999999999988777 5688899999999999999998888877776543
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=7.1e-07 Score=87.21 Aligned_cols=208 Identities=19% Similarity=0.203 Sum_probs=130.9
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC-------ceeEEEEecCCCCCEEEEEecCCCeEE-EEE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-------VLISETVWKNPGGRLIGMSWSEDQTLI-CVV 105 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-------~ll~si~~~~~~~~Iv~~~fs~de~Lv-~v~ 105 (691)
....|++-|.||+-|+.++ +|..++.. ....|++-...- .+-..-+.|. |.|.+.+|||+|+|+ +.+
T Consensus 34 airav~fhp~g~lyavgsn-skt~ric~--yp~l~~~r~~hea~~~pp~v~~kr~khhk--gsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSN-SKTFRICA--YPALIDLRHAHEAAKQPPSVLCKRNKHHK--GSIYCTAWSPCGELIATGS 108 (350)
T ss_pred heeeEEecCCCceEEeccC-CceEEEEc--cccccCcccccccccCCCeEEeeeccccC--ccEEEEEecCccCeEEecC
Confidence 3458999999999999875 34333221 122222211100 0112223344 899999999999985 789
Q ss_pred eCCeEEEEeCCCCee-----ccccCCCccccccCeEEEEEeC---CceEEEecC--C--eEEEEecCCCceEEEcCCCCc
Q 005559 106 QDGTVYRYNIHAELI-----EPNASMGKECFEENVVECVFWG---NGVVCVTEA--N--RYFCMADFATMKVCELARPEV 173 (691)
Q Consensus 106 ~DGtV~ly~~~G~~~-----~~sl~~~~~~~~~~V~~~~~~~---~G~vllt~~--~--~~~~v~n~~~~~~~~l~~~~l 173 (691)
.|.+|++-.++.+-. ...|.++ ++.|.+..|-+ .|-.++.+. + ++|.-.--.+.-+.-+..
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmh----dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg--- 181 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMH----DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG--- 181 (350)
T ss_pred CCceEEEEecccccccccCcceeeeec----CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC---
Confidence 999999875542211 1134556 67899999863 454444433 2 355433222222222321
Q ss_pred CCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc------------cccCCCeeEEEECCCCCEEEEEeeCCeEE
Q 005559 174 EELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------------KVDDTLSQKMAVSPNGNFVACFTHDGRLV 241 (691)
Q Consensus 174 ~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~------------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~ 241 (691)
+..+..++ ||=+|-+.+..+.|.||..||..-.. .+....|..+++.|.|+++|++..|..-.
T Consensus 182 -htghilal----yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ 256 (350)
T KOG0641|consen 182 -HTGHILAL----YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCM 256 (350)
T ss_pred -CcccEEEE----EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceE
Confidence 22455554 55688899999999999999987221 23446699999999999999999987776
Q ss_pred EEecCCCCceeeccCCC
Q 005559 242 VNNTNFSSPVIDESCES 258 (691)
Q Consensus 242 I~ssd~~~~l~e~d~~~ 258 (691)
++..--.+.+..|..++
T Consensus 257 lydirg~r~iq~f~phs 273 (350)
T KOG0641|consen 257 LYDIRGGRMIQRFHPHS 273 (350)
T ss_pred EEEeeCCceeeeeCCCc
Confidence 66665567777776553
No 93
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.7e-07 Score=104.69 Aligned_cols=200 Identities=12% Similarity=0.060 Sum_probs=150.8
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC-CceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCe
Q 005559 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (691)
Q Consensus 32 ~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-G~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGt 109 (691)
|=....|++.|.+-.....+ -|.+|++||.. -+.+.++.+|- +-|..+.|.+.-- ++++++|.|
T Consensus 51 dGpVRgv~FH~~qplFVSGG------------DDykIkVWnYk~rrclftL~GHl--DYVRt~~FHheyPWIlSASDDQT 116 (1202)
T KOG0292|consen 51 DGPVRGVDFHPTQPLFVSGG------------DDYKIKVWNYKTRRCLFTLLGHL--DYVRTVFFHHEYPWILSASDDQT 116 (1202)
T ss_pred CCccceeeecCCCCeEEecC------------CccEEEEEecccceehhhhcccc--ceeEEeeccCCCceEEEccCCCe
Confidence 33556888988765554444 47889999985 56788999998 8899999998766 568999999
Q ss_pred EEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceEEEcCCC----------------
Q 005559 110 VYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKVCELARP---------------- 171 (691)
Q Consensus 110 V~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~~~l~~~---------------- 171 (691)
||||||+ ++.+. .+.+| ..-|..|+|.|+--.+++++ .+.+.||++.+-+....+.-
T Consensus 117 IrIWNwqsr~~ia-vltGH----nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLf 191 (1202)
T KOG0292|consen 117 IRIWNWQSRKCIA-VLTGH----NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLF 191 (1202)
T ss_pred EEEEeccCCceEE-EEecC----ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhc
Confidence 9999996 56666 66666 56799999999665666665 56888999875443322111
Q ss_pred ---C------cCCC--CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-------cccCCCeeEEEECCCCCEEEE
Q 005559 172 ---E------VEEL--PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVAC 233 (691)
Q Consensus 172 ---~------l~~~--~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-------~~~~~~i~~Ia~SpnG~~IAl 233 (691)
. +.++ .-.|+. |.|.-.++|..+.|..|++|..++.. ..|.++|+.+-|.|+..+|.+
T Consensus 192 g~~DaVVK~VLEGHDRGVNwaA----fhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlS 267 (1202)
T KOG0292|consen 192 GQTDAVVKHVLEGHDRGVNWAA----FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILS 267 (1202)
T ss_pred CCcCeeeeeeecccccccceEE----ecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEe
Confidence 0 0011 345664 55677888888899999999888665 579999999999999999999
Q ss_pred EeeCCeEEEEecCCCCceeec
Q 005559 234 FTHDGRLVVNNTNFSSPVIDE 254 (691)
Q Consensus 234 ~t~dg~i~I~ssd~~~~l~e~ 254 (691)
.++|++|.||+-+-.+.+..|
T Consensus 268 nsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 268 NSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred cCCCccEEEEecccccceeee
Confidence 999999999987644445444
No 94
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.90 E-value=3e-07 Score=95.84 Aligned_cols=208 Identities=14% Similarity=0.165 Sum_probs=128.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC-CceeEEEEecCCCCCEEEEEecCCCeEEE-EEeCC-eEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTLIC-VVQDG-TVY 111 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-G~ll~si~~~~~~~~Iv~~~fs~de~Lv~-v~~DG-tV~ 111 (691)
...++++|+|+.+++.. ..++.|++|+.. ++.+.++... ..+.++.|+|++++++ ...++ .+.
T Consensus 75 ~~~~~~~~~g~~l~~~~-----------~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 75 PELFALHPNGKILYIAN-----------EDDNLVTVIDIETRKVLAEIPVG---VEPEGMAVSPDGKIVVNTSETTNMAH 140 (300)
T ss_pred ccEEEECCCCCEEEEEc-----------CCCCeEEEEECCCCeEEeEeeCC---CCcceEEECCCCCEEEEEecCCCeEE
Confidence 35678889988777664 146789999975 5667777642 3578899999999764 44444 466
Q ss_pred EEeCC-CCeeccccCCCccccccCeEEEEEeCCceEE-EecC-CeEEEEecCCCce-EEEcC--CCCcCCCCceEEEecC
Q 005559 112 RYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVC-VTEA-NRYFCMADFATMK-VCELA--RPEVEELPHCVAVIEP 185 (691)
Q Consensus 112 ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vl-lt~~-~~~~~v~n~~~~~-~~~l~--~~~l~~~~~~w~vi~~ 185 (691)
.|+.. ++... ....+ ..+..+.++++|..+ ++.. ..-+.+++..+.. ...+. .+.. .+........
T Consensus 141 ~~d~~~~~~~~-~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~i 212 (300)
T TIGR03866 141 FIDTKTYEIVD-NVLVD-----QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV--HPEAVQPVGI 212 (300)
T ss_pred EEeCCCCeEEE-EEEcC-----CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccc--ccccCCccce
Confidence 77875 34433 22211 234556788888655 4432 3345556665432 22222 1111 0111111111
Q ss_pred CcCCCCCeEEEE-EeCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEe-eCCeEEEEecCCCCceeeccCCCC
Q 005559 186 KYTMTGSVEVLI-GTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFT-HDGRLVVNNTNFSSPVIDESCESA 259 (691)
Q Consensus 186 ~~S~d~~~~vl~-s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t-~dg~i~I~ssd~~~~l~e~d~~~~ 259 (691)
.|++++...++. +.++++.+||..+.. ....+.+..++|||+|++|++.+ .+|+|.||+.+-.+.+.++..+
T Consensus 213 ~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-- 290 (300)
T TIGR03866 213 KLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-- 290 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc--
Confidence 367888875443 446789999987443 12446788999999999998875 4799999998766666666543
Q ss_pred CCCCeEE
Q 005559 260 LPPEQIA 266 (691)
Q Consensus 260 ~~p~q~~ 266 (691)
..|.+++
T Consensus 291 ~~~~~~~ 297 (300)
T TIGR03866 291 RLPWGVV 297 (300)
T ss_pred cccceeE
Confidence 3566554
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=7.7e-08 Score=95.14 Aligned_cols=183 Identities=15% Similarity=0.198 Sum_probs=124.1
Q ss_pred CCCCeEEEEecCchhhhhhcccCCCeEEEEc--CCC--ceeEEEEecCCCCCEEEEEecC--CCe-EEEEEeCCeEEEEe
Q 005559 42 PFGGPIAVIRDDSKIVQLYAESALRKLRIFN--SAG--VLISETVWKNPGGRLIGMSWSE--DQT-LICVVQDGTVYRYN 114 (691)
Q Consensus 42 p~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys--~sG--~ll~si~~~~~~~~Iv~~~fs~--de~-Lv~v~~DGtV~ly~ 114 (691)
=||..||+.+ .|++|+||. ++| +++.++.+|+ |++..++|-+ -|. |.+.+-||+|.||.
T Consensus 21 yygkrlATcs------------SD~tVkIf~v~~n~~s~ll~~L~Gh~--GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 21 YYGKRLATCS------------SDGTVKIFEVRNNGQSKLLAELTGHS--GPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhcceeeeec------------CCccEEEEEEcCCCCceeeeEecCCC--CCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 4788889886 799999998 356 6999999999 9999999987 566 56999999999997
Q ss_pred C-CCCeec-cccCCCccccccCeEEEEEeC--CceEEEe--cCCeEEEEecCCC-c-eEEEcCC-CCcCCCCceEEEecC
Q 005559 115 I-HAELIE-PNASMGKECFEENVVECVFWG--NGVVCVT--EANRYFCMADFAT-M-KVCELAR-PEVEELPHCVAVIEP 185 (691)
Q Consensus 115 ~-~G~~~~-~sl~~~~~~~~~~V~~~~~~~--~G~vllt--~~~~~~~v~n~~~-~-~~~~l~~-~~l~~~~~~w~vi~~ 185 (691)
- .|...+ +....| +..|.++.+-| .|+.++. +++.+-.+.--.+ . ...++.. .+.+-..-+|+ |+
T Consensus 87 e~~g~w~k~~e~~~h----~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswa--pa 160 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAH----SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWA--PA 160 (299)
T ss_pred cCCCchhhhhhhhhh----cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeec--Cc
Confidence 6 455433 122333 56678877644 7776655 4465554431111 1 1111111 01111123443 11
Q ss_pred CcCCCC-----------CeEEEEEeCCeEEEEecCCcc-------cccCCCeeEEEECCCC----CEEEEEeeCCeEEEE
Q 005559 186 KYTMTG-----------SVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNG----NFVACFTHDGRLVVN 243 (691)
Q Consensus 186 ~~S~d~-----------~~~vl~s~d~ti~l~d~~~~~-------~~~~~~i~~Ia~SpnG----~~IAl~t~dg~i~I~ 243 (691)
. ..| ...|..+.|+.|++|+.++-. ..|.+-|..++..|+- ..||+.++||++.||
T Consensus 161 ~--~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 161 S--APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred C--CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 1 112 346777889999999988633 4688889999999986 379999999999999
Q ss_pred ecC
Q 005559 244 NTN 246 (691)
Q Consensus 244 ssd 246 (691)
+.+
T Consensus 239 t~~ 241 (299)
T KOG1332|consen 239 TKD 241 (299)
T ss_pred Eec
Confidence 987
No 96
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=3.4e-07 Score=93.43 Aligned_cols=254 Identities=14% Similarity=0.225 Sum_probs=162.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEE-EEecCCCCCEEEEEecCCCe-EEEEEeCCeEEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE-TVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYR 112 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~s-i~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~l 112 (691)
-....+++.|..+|+.- .++.|-||+-.-.-++. +..|. -+|.+++||+||+ |++.+.|..+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc------------~nG~vvI~D~~T~~iar~lsaH~--~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGC------------ANGRVVIYDFDTFRIARMLSAHV--RPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred cceEEeccCcceeeeec------------cCCcEEEEEccccchhhhhhccc--cceeEEEecCCCCEeeeecCCceeEE
Confidence 45778999999999986 68999999986555554 56666 5899999999998 679999999999
Q ss_pred EeC-CCCeec-cccCCCccccccCeEEEEEeC--CceEEEecCCeEEEEecCCCceEEEcCC-CC--cCCCCceEEEecC
Q 005559 113 YNI-HAELIE-PNASMGKECFEENVVECVFWG--NGVVCVTEANRYFCMADFATMKVCELAR-PE--VEELPHCVAVIEP 185 (691)
Q Consensus 113 y~~-~G~~~~-~sl~~~~~~~~~~V~~~~~~~--~G~vllt~~~~~~~v~n~~~~~~~~l~~-~~--l~~~~~~w~vi~~ 185 (691)
||+ .|..++ +-|. ..|+.|.+.| ...++++--..--.+-.++.|.-..|+. ++ ++..++|-
T Consensus 92 wDl~~gs~l~rirf~-------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~----- 159 (405)
T KOG1273|consen 92 WDLLKGSPLKRIRFD-------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHG----- 159 (405)
T ss_pred EeccCCCceeEEEcc-------CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccc-----
Confidence 998 687644 3343 4599998876 4444444222112222333355555542 11 11112221
Q ss_pred CcCCCCCeEEEEEeCCeEEEEecCCcc-----ccc-CCCeeEEEECCCCCEEEEEeeCCeEEEEecC-CCCc----e--e
Q 005559 186 KYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVD-DTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSP----V--I 252 (691)
Q Consensus 186 ~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~-~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd-~~~~----l--~ 252 (691)
.|...|..++....-|.+.+++..... +.. ...|.+|-||-+|+++++=+.|.+|+++... .... - .
T Consensus 160 ~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~ 239 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEP 239 (405)
T ss_pred cccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcCh
Confidence 266778877777777888888877443 233 3678899999999999999999999988642 2111 0 0
Q ss_pred eccCCCCCCCCeEEE--e--cCceE----------EE-EEcC----eE-EEEcCCCC---ceEeecCCCeEEeecCCceE
Q 005559 253 DESCESALPPEQIAW--C--GMDSV----------LL-YWND----ML-VMVAPQAE---PVQYFYDEPLVLIPECDGVR 309 (691)
Q Consensus 253 e~d~~~~~~p~q~~W--C--G~dav----------vl-~~~~----~l-~liGp~~~---~v~f~~d~~~~l~~E~DGvR 309 (691)
++... .-.....| | .+|+- ++ .|+. .+ .|-|+.|+ -|.+-+-.++++.-+.+-++
T Consensus 240 ~~K~q--DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~ 317 (405)
T KOG1273|consen 240 EHKLQ--DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVY 317 (405)
T ss_pred hHHHH--HHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceE
Confidence 11110 12235566 2 11221 22 3653 33 35688876 34455555666666666699
Q ss_pred EEecCcc
Q 005559 310 ILSNSSM 316 (691)
Q Consensus 310 Iit~~~~ 316 (691)
||+....
T Consensus 318 iw~~~~~ 324 (405)
T KOG1273|consen 318 IWAVVQV 324 (405)
T ss_pred EEEeecc
Confidence 9998753
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.87 E-value=2.4e-07 Score=97.95 Aligned_cols=199 Identities=12% Similarity=0.144 Sum_probs=140.1
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeC-CCCeec-cccCCCccccccCeEEE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIE-PNASMGKECFEENVVEC 138 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~-~G~~~~-~sl~~~~~~~~~~V~~~ 138 (691)
+.+..|+||+. ...--..+.-|. ++|.++.-.|.++ |+..+.||+.-..+. .|..+. .+-... +-++..+
T Consensus 280 Sad~~i~vws~~~~s~~~~~~~h~--~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s----~v~~ts~ 353 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPTSSRPHE--EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETS----DVEYTSA 353 (506)
T ss_pred CCcceEEeeccccccCcccccccc--ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccc----cceeEEe
Confidence 47899999995 222333444466 7899999999888 678999999998888 465433 222111 3558899
Q ss_pred EEeCCceEEEecCC-eEEEEecCCCce-EEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----
Q 005559 139 VFWGNGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---- 212 (691)
Q Consensus 139 ~~~~~G~vllt~~~-~~~~v~n~~~~~-~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~---- 212 (691)
.|.|+|+.+.|+.. .++.+|++.++. .-.|+. +....-++ +||.+|-..+..+.|+.|++||.....
T Consensus 354 ~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg----ht~~vk~i---~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 354 AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG----HTGPVKAI---SFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred eEcCCceEEeccCCCceEEEEEcCCccccccCCC----CCCceeEE---EeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 99999999999884 588889887553 223332 22223344 699999999999999999999988443
Q ss_pred -c-ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCC--CceeeccCCCCCCCCeEEEecCceEEEE
Q 005559 213 -K-VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS--SPVIDESCESALPPEQIAWCGMDSVLLY 276 (691)
Q Consensus 213 -~-~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~--~~l~e~d~~~~~~p~q~~WCG~davvl~ 276 (691)
. ....++..++|-+.|++++.++.+=+|+++.+.-. +.+.++..++ .+...+|-|+++.+|.
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEHAQYLA 492 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeecccceEEe
Confidence 1 23347999999999999999987777777654311 2233443332 4667788888887764
No 98
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.1e-06 Score=97.59 Aligned_cols=197 Identities=13% Similarity=0.159 Sum_probs=138.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEE--EEecCCCCCEEEEEecCCCeEEEEEeCCeEEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE--TVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY 113 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~s--i~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly 113 (691)
-.+|+|...+.+|+.| .+++|.||+..-..... |.++. .+.|-++.|++.++|.+++-+|+|--|
T Consensus 29 ~slA~s~kS~~lAvsR------------t~g~IEiwN~~~~w~~~~vi~g~~-drsIE~L~W~e~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSR------------TDGNIEIWNLSNNWFLEPVIHGPE-DRSIESLAWAEGGRLFSSGLSGSITEW 95 (691)
T ss_pred EEEEEeccCCceeeec------------cCCcEEEEccCCCceeeEEEecCC-CCceeeEEEccCCeEEeecCCceEEEE
Confidence 4778999999999998 68999999987654444 55543 257999999999999999999999999
Q ss_pred eCC-CCeeccccCCCccccccCeEEEEEeCCceEEEec--CCeEEEEecCCCceEEEcCCCCcC-CCCceEEEecCCcCC
Q 005559 114 NIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFATMKVCELARPEVE-ELPHCVAVIEPKYTM 189 (691)
Q Consensus 114 ~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~--~~~~~~v~n~~~~~~~~l~~~~l~-~~~~~w~vi~~~~S~ 189 (691)
|++ |+... .+... -+.||.+.+.+.+-.++-+ +|.++.+.. +|...++... +. ......++ +|.+
T Consensus 96 Dl~~lk~~~-~~d~~----gg~IWsiai~p~~~~l~IgcddGvl~~~s~--~p~~I~~~r~-l~rq~sRvLsl---sw~~ 164 (691)
T KOG2048|consen 96 DLHTLKQKY-NIDSN----GGAIWSIAINPENTILAIGCDDGVLYDFSI--GPDKITYKRS-LMRQKSRVLSL---SWNP 164 (691)
T ss_pred ecccCceeE-EecCC----CcceeEEEeCCccceEEeecCCceEEEEec--CCceEEEEee-cccccceEEEE---EecC
Confidence 995 55433 22211 3568999998866555544 454444432 2333333211 11 22344444 6889
Q ss_pred CCCeEEEEEeCCeEEEEecCCccccc----------C---CCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccC
Q 005559 190 TGSVEVLIGTDAGILMLDEDGVQKVD----------D---TLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (691)
Q Consensus 190 d~~~~vl~s~d~ti~l~d~~~~~~~~----------~---~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~ 256 (691)
++..++..+.|+.|.+||...++.++ . .-|+++.+=-+| .||++...|++..|+++|.+.+..+..
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~ 243 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSC 243 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhh
Confidence 99999999999999999998665211 1 225666555565 799998899999999999988765553
Q ss_pred C
Q 005559 257 E 257 (691)
Q Consensus 257 ~ 257 (691)
+
T Consensus 244 h 244 (691)
T KOG2048|consen 244 H 244 (691)
T ss_pred h
Confidence 3
No 99
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=1.9e-08 Score=112.62 Aligned_cols=196 Identities=14% Similarity=0.140 Sum_probs=136.1
Q ss_pred CCCeEEEEcCCC----ceeEEEEecCCCCCEEEEEecCCCe--EEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEE
Q 005559 64 ALRKLRIFNSAG----VLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVE 137 (691)
Q Consensus 64 ~~~~I~Iys~sG----~ll~si~~~~~~~~Iv~~~fs~de~--Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~ 137 (691)
..+.|-+|+.+- +++..+.-|. -.+.++.|.+-|- |+++++||+|++||+.-+-...++... .+.|.|
T Consensus 108 ~nG~i~vWdlnk~~rnk~l~~f~EH~--Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n----SESiRD 181 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKLLTVFNEHE--RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN----SESIRD 181 (839)
T ss_pred CCCcEEEEecCccccchhhhHhhhhc--cceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc----chhhhc
Confidence 457777787543 3455556565 5699999988654 678999999999999765543244333 356999
Q ss_pred EEEeC-CceEEEe-cCCeEEEEecCCCceEEEcCCCCcC-CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc--
Q 005559 138 CVFWG-NGVVCVT-EANRYFCMADFATMKVCELARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-- 212 (691)
Q Consensus 138 ~~~~~-~G~vllt-~~~~~~~v~n~~~~~~~~l~~~~l~-~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-- 212 (691)
++|++ .|..+++ .++.+...|++..|..+.+. +. +.....++ +++|++..+++.+.|++|++|+.++..
T Consensus 182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k---~~AH~GpV~c~---nwhPnr~~lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKK---LTAHNGPVLCL---NWHPNREWLATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred eeeccCCCceEEEecCCceEEEeeccCchhHHHH---hhcccCceEEE---eecCCCceeeecCCCccEEEEeccCCCcc
Confidence 99996 5544444 45668888998766544332 11 22344455 688999999999999999999999655
Q ss_pred ----cccCCCeeEEEECCCCC-EEEEEee--CCeEEEEecCCCCce---eeccCCCCCCCCeEEEecCceEE
Q 005559 213 ----KVDDTLSQKMAVSPNGN-FVACFTH--DGRLVVNNTNFSSPV---IDESCESALPPEQIAWCGMDSVL 274 (691)
Q Consensus 213 ----~~~~~~i~~Ia~SpnG~-~IAl~t~--dg~i~I~ssd~~~~l---~e~d~~~~~~p~q~~WCG~davv 274 (691)
-.+..|+.++.+=|..+ +||+-+. |-.|.||+. .+.+ ..|+.+. .....|.|-+.|..+
T Consensus 256 ~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv--rRPYIP~~t~~eH~-~~vt~i~W~~~d~~~ 324 (839)
T KOG0269|consen 256 PKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV--RRPYIPYATFLEHT-DSVTGIAWDSGDRIN 324 (839)
T ss_pred ceeEEeecceeeeeeeccCccchhhhhhccccceEEEEee--ccccccceeeeccC-ccccceeccCCCcee
Confidence 24678999999999886 4666543 568899964 4554 3444442 345688887766554
No 100
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=8.3e-08 Score=108.78 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=112.5
Q ss_pred EEEecccccccCC-C-CcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC------------------
Q 005559 16 RYYRKPELYQMRW-K-HIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG------------------ 75 (691)
Q Consensus 16 ~~yr~~~~y~~~w-~-~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG------------------ 75 (691)
.+|....+|.++| . ..+=+.+..-|||+|..+|+++ .|+.|+||.--+
T Consensus 249 ~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaG------------eD~virVWkVie~e~~~~~~~~~~~~~~~~ 316 (712)
T KOG0283|consen 249 SPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAG------------EDGVIRVWKVIESERMRVAEGDSSCMYFEY 316 (712)
T ss_pred CcccceeeEEeeccccccCCcEEEEEeCCCCceeeecC------------CCceEEEEEEeccchhcccccccchhhhhh
Confidence 4555556666666 2 2233567888999999999996 578888886433
Q ss_pred -------------------------------------------ceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEE
Q 005559 76 -------------------------------------------VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYR 112 (691)
Q Consensus 76 -------------------------------------------~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~l 112 (691)
+++..+.+|. +.|.++.||.++-|++.+-|.|||+
T Consensus 317 ~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt--~DILDlSWSKn~fLLSSSMDKTVRL 394 (712)
T KOG0283|consen 317 NANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHT--ADILDLSWSKNNFLLSSSMDKTVRL 394 (712)
T ss_pred hhccccCccccccccccccccccccccCCccccCCCccccccccchhhhhccc--hhheecccccCCeeEeccccccEEe
Confidence 2333344565 7899999999999999999999999
Q ss_pred EeCCCC-eeccccCCCccccccCeEEEEEeC-CceEEEecC-CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCC
Q 005559 113 YNIHAE-LIEPNASMGKECFEENVVECVFWG-NGVVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTM 189 (691)
Q Consensus 113 y~~~G~-~~~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~-~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~ 189 (691)
|.+.-+ .+. .|.|. +-|..+.|.| +--.+++++ ..-..+|++.+.++..-.+.. ...+. | .|+|
T Consensus 395 Wh~~~~~CL~-~F~Hn-----dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITA--v---cy~P 461 (712)
T KOG0283|consen 395 WHPGRKECLK-VFSHN-----DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITA--V---CYSP 461 (712)
T ss_pred ecCCCcceee-EEecC-----CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh--hhhee--E---Eecc
Confidence 999654 455 66553 5588889988 666677766 345666776555443333210 11222 2 3667
Q ss_pred CCCeEEEEEeCCeEEEEecCCc
Q 005559 190 TGSVEVLIGTDAGILMLDEDGV 211 (691)
Q Consensus 190 d~~~~vl~s~d~ti~l~d~~~~ 211 (691)
||+-.|+.+.+|..+.++..+.
T Consensus 462 dGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 462 DGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred CCceEEEEEeccEEEEEEccCC
Confidence 7777777777776666655544
No 101
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.85 E-value=1.1e-07 Score=104.62 Aligned_cols=229 Identities=12% Similarity=0.200 Sum_probs=156.9
Q ss_pred CEEEEEecCCCeEEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceEE
Q 005559 89 RLIGMSWSEDQTLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKVC 166 (691)
Q Consensus 89 ~Iv~~~fs~de~Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~~ 166 (691)
-|..++|-|||.-+++..+..+.+||+ .|.+++ ++..| .+.|..+..+.+|..+++++ .+.+.+|+-.-.-.-
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llq-tLKgH----KDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQ-PLKGH----KDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCccccc-ccccc----cceEEEEEEccCCceeccCCCceeEEEeccccccee
Confidence 599999999998777777778999999 588888 77777 57788888888999999977 568888884311111
Q ss_pred EcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc---cccCCCeeEEEECCCCCEEEEEeeCCeEEEE
Q 005559 167 ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVN 243 (691)
Q Consensus 167 ~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~---~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ 243 (691)
+.+.. ....|+.. .|=.+..+.-+-+. .=+|+.+... .-....+...++..||+++|++-.+|||.|.
T Consensus 89 kYSH~---D~IQCMsF-----NP~~h~LasCsLsd-FglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 89 KYSHN---DAIQCMSF-----NPITHQLASCSLSD-FGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIR 159 (1081)
T ss_pred eeccC---CeeeEeec-----CchHHHhhhcchhh-ccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEee
Confidence 22210 12566654 33334333333332 4567766443 2234567888999999999999999999998
Q ss_pred ecCCCCc-eeeccCCCCCCCCeEEEe-----c-CceE-EEEEcCeEE-------EEcCC------CCceEeecCCCeEEe
Q 005559 244 NTNFSSP-VIDESCESALPPEQIAWC-----G-MDSV-LLYWNDMLV-------MVAPQ------AEPVQYFYDEPLVLI 302 (691)
Q Consensus 244 ssd~~~~-l~e~d~~~~~~p~q~~WC-----G-~dav-vl~~~~~l~-------liGp~------~~~v~f~~d~~~~l~ 302 (691)
+..-... ..+-..++.++...++|| | +|.+ |+-|+..+. ++|.. .-.++|..++..+|+
T Consensus 160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEE
Confidence 6542322 234445556678899999 3 3333 457887654 44522 125888889999999
Q ss_pred ecCCc-eEEEecCcceeeeccchhhhhhccc
Q 005559 303 PECDG-VRILSNSSMEFLQRVPASTEQIFAI 332 (691)
Q Consensus 303 ~E~DG-vRIit~~~~efL~~Vp~~~~~If~i 332 (691)
...|| ++++|.+ .-.|-.|.+--..|+.+
T Consensus 240 GGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV 269 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRD-GVRLGTVGEQDSWIWTV 269 (1081)
T ss_pred ccCCCceEEEeec-CeEEeeccccceeEEEE
Confidence 99998 9999999 56667776654455543
No 102
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.84 E-value=1.3e-07 Score=101.70 Aligned_cols=189 Identities=11% Similarity=0.069 Sum_probs=118.7
Q ss_pred cCCCeEEEEcCCCcee--EEEEe--cCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCe-eccccCCCc------c-
Q 005559 63 SALRKLRIFNSAGVLI--SETVW--KNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAEL-IEPNASMGK------E- 129 (691)
Q Consensus 63 ~~~~~I~Iys~sG~ll--~si~~--~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~-~~~sl~~~~------~- 129 (691)
+.|.+|++|+-+|-=- .+++- ......|.++.||+.+. ++||+.....+++|..|.. .++.-+... .
T Consensus 186 s~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTK 265 (641)
T KOG0772|consen 186 SLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTK 265 (641)
T ss_pred cccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccC
Confidence 5899999999988321 11111 11114699999999866 7899999999999999864 332222100 0
Q ss_pred ccccCeEEEEEeC-C-ceEEEecCCeEEEEecCCCc--eEEEcCCCCcC-CC-CceEEEecCCcCCCCCeEEEEEeCCeE
Q 005559 130 CFEENVVECVFWG-N-GVVCVTEANRYFCMADFATM--KVCELARPEVE-EL-PHCVAVIEPKYTMTGSVEVLIGTDAGI 203 (691)
Q Consensus 130 ~~~~~V~~~~~~~-~-G~vllt~~~~~~~v~n~~~~--~~~~l~~~~l~-~~-~~~w~vi~~~~S~d~~~~vl~s~d~ti 203 (691)
.-..++.+..+.| + +.++-++......+|+++.+ ....+...+.+ .. |..-| .|++||..++....||.|
T Consensus 266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC----~~nrdg~~iAagc~DGSI 341 (641)
T KOG0772|consen 266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC----AWNRDGKLIAAGCLDGSI 341 (641)
T ss_pred CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee----ecCCCcchhhhcccCCce
Confidence 0012233434334 3 44444444434445554433 22233221111 11 32223 488999998888889999
Q ss_pred EEEecCCcc--------cccCC--CeeEEEECCCCCEEEEEeeCCeEEEEec-CCCCceeecc
Q 005559 204 LMLDEDGVQ--------KVDDT--LSQKMAVSPNGNFVACFTHDGRLVVNNT-NFSSPVIDES 255 (691)
Q Consensus 204 ~l~d~~~~~--------~~~~~--~i~~Ia~SpnG~~IAl~t~dg~i~I~ss-d~~~~l~e~d 255 (691)
..|+..+.. ..|.. .|+.|+||++|++|++=+.|+++++|+. .|.+.+.++.
T Consensus 342 Q~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~t 404 (641)
T KOG0772|consen 342 QIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRT 404 (641)
T ss_pred eeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhc
Confidence 999975433 23444 7999999999999999999999999985 4666665543
No 103
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=5.6e-07 Score=102.86 Aligned_cols=219 Identities=16% Similarity=0.243 Sum_probs=139.7
Q ss_pred CCEEEEEecCCCe-EEEEEeCCeEEEEeCCCC--eeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCCc-
Q 005559 88 GRLIGMSWSEDQT-LICVVQDGTVYRYNIHAE--LIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATM- 163 (691)
Q Consensus 88 ~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~--~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~~- 163 (691)
+....+.|+|+|+ ++++++||.||+|+-... .-+ ++... ...|..+....+ ..+.++.++.+.+..+.++
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-ti~~~----g~~v~~ia~~s~-~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-TIDIS----GELVSSIACYSN-HFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-hhhcc----CceeEEEeeccc-ceEEeeccceEEEeeCCCCC
Confidence 4578889999988 468999999999965422 112 22211 123444443334 4444444555555555433
Q ss_pred ---eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEe
Q 005559 164 ---KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFT 235 (691)
Q Consensus 164 ---~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t 235 (691)
.+.+++- +..+.+| +-+|..++..+.|-.|++++.++.. ..+.+||.++.++|+|++||..+
T Consensus 88 ~~~iL~Rftl-----p~r~~~v-----~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss 157 (933)
T KOG1274|consen 88 EDTILARFTL-----PIRDLAV-----SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS 157 (933)
T ss_pred ccceeeeeec-----cceEEEE-----ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe
Confidence 3333331 1344444 4688999999999999999887543 67999999999999999999999
Q ss_pred eCCeEEEEecCCCCcee-------eccCCCCCCCCeEEEe----------cCceEEEE----EcCeEEEEcCCCC----c
Q 005559 236 HDGRLVVNNTNFSSPVI-------DESCESALPPEQIAWC----------GMDSVLLY----WNDMLVMVAPQAE----P 290 (691)
Q Consensus 236 ~dg~i~I~ssd~~~~l~-------e~d~~~~~~p~q~~WC----------G~davvl~----~~~~l~liGp~~~----~ 290 (691)
-||+++||+.+-+.+.. .++........+++|. -+++|+++ |.....|-+-... .
T Consensus 158 ~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 158 CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 99999999875222211 1111112345677886 34455443 2223333332222 4
Q ss_pred eEeecCCCeEEeecCCc-eEEEecCc---ceeeecc
Q 005559 291 VQYFYDEPLVLIPECDG-VRILSNSS---MEFLQRV 322 (691)
Q Consensus 291 v~f~~d~~~~l~~E~DG-vRIit~~~---~efL~~V 322 (691)
++|++.|..+..+..|| |-||..++ ++|..+|
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~~~~~~~~V 273 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTHERHEFKRAV 273 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccchhcccccee
Confidence 67777788889999999 99998884 4466555
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=1.5e-07 Score=96.09 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=128.2
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEE-EEEeCCeEEEEeC
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDGTVYRYNI 115 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv-~v~~DGtV~ly~~ 115 (691)
.+-+|-.|..|+.++ .+.+|.||+..|++|++|.-++ ..-..-.-||+|+.+ +..=.--|++|-+
T Consensus 192 ~iGiA~~~k~imsas------------~dt~i~lw~lkGq~L~~idtnq--~~n~~aavSP~GRFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 192 NIGIAGNAKYIMSAS------------LDTKICLWDLKGQLLQSIDTNQ--SSNYDAAVSPDGRFIAVSGFTPDVKVWEP 257 (420)
T ss_pred EEeecCCceEEEEec------------CCCcEEEEecCCceeeeecccc--ccccceeeCCCCcEEEEecCCCCceEEEE
Confidence 355666777777774 7899999999999999999988 677888899999965 4444556899954
Q ss_pred ----CCCeec----cccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCC-----CceEEEcCC--CCcC---CC
Q 005559 116 ----HAELIE----PNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFA-----TMKVCELAR--PEVE---EL 176 (691)
Q Consensus 116 ----~G~~~~----~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~-----~~~~~~l~~--~~l~---~~ 176 (691)
+|++.+ +++.+| +..|..+.|+++.--++|.+ ..-|.+||.+ +..++.|.. .|+- +.
T Consensus 258 ~f~kdG~fqev~rvf~LkGH----~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~ 333 (420)
T KOG2096|consen 258 IFTKDGTFQEVKRVFSLKGH----QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSE 333 (420)
T ss_pred EeccCcchhhhhhhheeccc----hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCC
Confidence 577643 567777 67899999999877776655 4478888765 223333322 1221 22
Q ss_pred CceEEEecCCcCCCCCeEEEEEeCCeEEEEecC-Ccc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 177 ~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~-~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
|--.+ .||+|+.. .++.+.++.++... |.. ..+.+-|..|++||+|+++|+.+ |..+.|+.
T Consensus 334 p~RL~-----lsP~g~~l-A~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 334 PVRLE-----LSPSGDSL-AVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ceEEE-----eCCCCcEE-EeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 43333 45777754 45567777777544 333 56889999999999999999987 44555553
No 105
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.83 E-value=1.9e-08 Score=104.17 Aligned_cols=171 Identities=15% Similarity=0.214 Sum_probs=126.4
Q ss_pred CCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe--EEEEEeCCeEEEEeC-CCCeec-cccCCCccccccCeEEEE
Q 005559 65 LRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNI-HAELIE-PNASMGKECFEENVVECV 139 (691)
Q Consensus 65 ~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~--Lv~v~~DGtV~ly~~-~G~~~~-~sl~~~~~~~~~~V~~~~ 139 (691)
...|.||+. .-++++++.|-. +.|.++.|+|.|. |.+..+|+.+.+||+ ++..++ ..+.+. -..+.
T Consensus 166 Ge~i~IWD~~R~~Pv~smswG~--Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR-------TN~Is 236 (433)
T KOG0268|consen 166 GEQIDIWDEQRDNPVSSMSWGA--DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMR-------TNTIC 236 (433)
T ss_pred CceeeecccccCCccceeecCC--CceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecc-------cccee
Confidence 456999997 468999999987 7899999999887 457789999999999 466544 233333 23445
Q ss_pred EeCCceEEEecCC--eEEEEecCCCceEEEcCCCCcC-CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----
Q 005559 140 FWGNGVVCVTEAN--RYFCMADFATMKVCELARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---- 212 (691)
Q Consensus 140 ~~~~G~vllt~~~--~~~~v~n~~~~~~~~l~~~~l~-~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~---- 212 (691)
+.|++..+++++. ++|..+ .+-|..| ++ ...+.-+|+..+|||.|+-.|..++|.+|.++..++..
T Consensus 237 wnPeafnF~~a~ED~nlY~~D------mR~l~~p-~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 237 WNPEAFNFVAANEDHNLYTYD------MRNLSRP-LNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred cCccccceeeccccccceehh------hhhhccc-chhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhh
Confidence 5678887777664 344431 1112221 21 23566678888999999999999999999999988654
Q ss_pred --cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCce
Q 005559 213 --KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV 251 (691)
Q Consensus 213 --~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l 251 (691)
.--...|..+.+|-|.++|.++++|+.+.+|...-++.+
T Consensus 310 YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 310 YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred hhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 123356899999999999999999999999987644443
No 106
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.81 E-value=1.2e-06 Score=91.02 Aligned_cols=254 Identities=13% Similarity=0.144 Sum_probs=162.0
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVY 111 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ 111 (691)
+...+++|.+|+.+|+.. .++.|+||.. .|...+++-... +.|.-|.|-|-.++ +..+.||.+-
T Consensus 108 SVt~~~FshdgtlLATGd------------msG~v~v~~~stg~~~~~~~~e~--~dieWl~WHp~a~illAG~~DGsvW 173 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGD------------MSGKVLVFKVSTGGEQWKLDQEV--EDIEWLKWHPRAHILLAGSTDGSVW 173 (399)
T ss_pred ceEEEEEccCceEEEecC------------CCccEEEEEcccCceEEEeeccc--CceEEEEecccccEEEeecCCCcEE
Confidence 455788999999999874 7899999996 688888887555 78999999999884 6899999999
Q ss_pred EEeCCC-CeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCC-ceEEEcCC------CCcCCCCceEEE
Q 005559 112 RYNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFAT-MKVCELAR------PEVEELPHCVAV 182 (691)
Q Consensus 112 ly~~~G-~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~-~~~~~l~~------~~l~~~~~~w~v 182 (691)
.|++.. ...+ .+.++ +..+..-+|.|+|.-++|.. ...+.+||... ....++.. |.....-..|.+
T Consensus 174 mw~ip~~~~~k-v~~Gh----~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~ 248 (399)
T KOG0296|consen 174 MWQIPSQALCK-VMSGH----NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTL 248 (399)
T ss_pred EEECCCcceee-EecCC----CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccccee
Confidence 998864 4445 55555 45677889999999999866 34777788653 33334431 111111122333
Q ss_pred ecCCcCCCCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCC--ceeec
Q 005559 183 IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS--PVIDE 254 (691)
Q Consensus 183 i~~~~S~d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~--~l~e~ 254 (691)
+. -+.+++..+.....+.|+........ ......|-.+.+|..=.+.|+++-||+|-||...-.+ .++++
T Consensus 249 ~~--g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h 326 (399)
T KOG0296|consen 249 TK--GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH 326 (399)
T ss_pred Ee--ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccC
Confidence 21 12233322222223333333321111 1122345666777777889999999999999875332 23443
Q ss_pred cCCCCCCCCeEEEec--------CceEEEEEcC-----eEEEEcCCCCceEeec--CCCeEEeecCCc-eEEEe
Q 005559 255 SCESALPPEQIAWCG--------MDSVLLYWND-----MLVMVAPQAEPVQYFY--DEPLVLIPECDG-VRILS 312 (691)
Q Consensus 255 d~~~~~~p~q~~WCG--------~davvl~~~~-----~l~liGp~~~~v~f~~--d~~~~l~~E~DG-vRIit 312 (691)
.....++.|-+ -|++|-.|+- .....||+-.-..|.+ +...++....|+ .|||-
T Consensus 327 ----e~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 327 ----EDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ----CCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 34578999976 4556667763 3456788776555544 456666666666 66653
No 107
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=4.1e-07 Score=101.73 Aligned_cols=204 Identities=16% Similarity=0.145 Sum_probs=121.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEE-EeCCeEEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICV-VQDGTVYR 112 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v-~~DGtV~l 112 (691)
....+.||+|..||..+.. ..++.|.+|+..+.....+.... +......|+||++ |+++ ..+|...+
T Consensus 206 v~~p~wSPDG~~la~~s~~---------~~~~~i~i~dl~tg~~~~l~~~~--g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFE---------NKKSQLVVHDLRSGARKVVASFR--GHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred cccceEcCCCCEEEEEEec---------CCCcEEEEEeCCCCceEEEecCC--CccCceeECCCCCEEEEEEecCCcEEE
Confidence 4568999999999988642 24678999998654333333222 4455789999998 4544 46888777
Q ss_pred E--eCCCCeeccccCCCccccccCeEEEEEeCCceEEE-ecC--C--eEEEEecCCCceEEEcCCCCcCCCCceEEEecC
Q 005559 113 Y--NIHAELIEPNASMGKECFEENVVECVFWGNGVVCV-TEA--N--RYFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (691)
Q Consensus 113 y--~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vll-t~~--~--~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~ 185 (691)
| |+.+...+ .+..+ ...+....++++|..++ +++ + ++|.++. .+.....+.. ... .+
T Consensus 275 y~~d~~~~~~~-~lt~~----~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~-~~~~~~~l~~-------~~~---~~ 338 (429)
T PRK01742 275 YVMGANGGTPS-QLTSG----AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA-SGGGASLVGG-------RGY---SA 338 (429)
T ss_pred EEEECCCCCeE-eeccC----CCCcCCEEECCCCCEEEEEECCCCCceEEEEEC-CCCCeEEecC-------CCC---Cc
Confidence 7 66543333 23222 23456778888986433 332 2 3555432 2222222221 111 34
Q ss_pred CcCCCCCeEEEEEeCCeEEEEecCCcc--cc-cCCCeeEEEECCCCCEEEEEeeCCeEEEE---ecCCCCceeeccCCCC
Q 005559 186 KYTMTGSVEVLIGTDAGILMLDEDGVQ--KV-DDTLSQKMAVSPNGNFVACFTHDGRLVVN---NTNFSSPVIDESCESA 259 (691)
Q Consensus 186 ~~S~d~~~~vl~s~d~ti~l~d~~~~~--~~-~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~---ssd~~~~l~e~d~~~~ 259 (691)
.+||||+.+++.+.++ ++.||..+.. .. .......++|||||++|++.+.+|...+| +.+ ++...++..+ .
T Consensus 339 ~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~-G~~~~~l~~~-~ 415 (429)
T PRK01742 339 QISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSAD-GRFKARLPGS-D 415 (429)
T ss_pred cCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCceEEccCC-C
Confidence 7899999988887754 6678876432 11 11233568899999999999988765544 333 4455555432 2
Q ss_pred CCCCeEEEe
Q 005559 260 LPPEQIAWC 268 (691)
Q Consensus 260 ~~p~q~~WC 268 (691)
......+|.
T Consensus 416 g~~~~p~ws 424 (429)
T PRK01742 416 GQVKFPAWS 424 (429)
T ss_pred CCCCCcccC
Confidence 234455564
No 108
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.80 E-value=2.5e-07 Score=104.95 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=143.7
Q ss_pred ecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCC--------------------------------Cee-cccc----
Q 005559 83 WKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHA--------------------------------ELI-EPNA---- 124 (691)
Q Consensus 83 ~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G--------------------------------~~~-~~sl---- 124 (691)
-|. |.|.+|.||+||+ |+++++||.||||..-+ +.. +.+.
T Consensus 265 ah~--gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 265 AHK--GAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccC--CcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 455 8999999999999 57999999999996643 000 0000
Q ss_pred -----------------------CCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCCc-eEEEcCCCCcCCCCceE
Q 005559 125 -----------------------SMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATM-KVCELARPEVEELPHCV 180 (691)
Q Consensus 125 -----------------------~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~~-~~~~l~~~~l~~~~~~w 180 (691)
.+| .++|.|+..+.+++.+-.+-.+.+.+|+.... -+..|..+.. .+|-
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GH----t~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hndf---VTcV 415 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGH----TADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDF---VTCV 415 (712)
T ss_pred cCCccccCCCccccccccchhhhhcc----chhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCe---eEEE
Confidence 012 34577877566777666666779999998733 3444443222 4554
Q ss_pred EEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccC
Q 005559 181 AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (691)
Q Consensus 181 ~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~ 256 (691)
+.-| -|....+..+-|+.+.+|+..++. ..-..-|++|+++|||+....++.+|...++.+.--+....+..
T Consensus 416 aFnP----vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 416 AFNP----VDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred Eecc----cCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 4433 256677888889999999999887 22336799999999999999999999999998752222222221
Q ss_pred --C----C-CCCCCeEEEe-cCce-EEEEEcC-e------------EEEEcCCCC----ceEeecCCCeEEeecCCc-eE
Q 005559 257 --E----S-ALPPEQIAWC-GMDS-VLLYWND-M------------LVMVAPQAE----PVQYFYDEPLVLIPECDG-VR 309 (691)
Q Consensus 257 --~----~-~~~p~q~~WC-G~da-vvl~~~~-~------------l~liGp~~~----~v~f~~d~~~~l~~E~DG-vR 309 (691)
+ . ..+...++.+ |+-. |++.=+| . .++.|..+. ..+|.-|+..++.+.-|- |-
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 1 0 1135577777 3322 4444333 1 245566442 577888887777666654 99
Q ss_pred EEecCc
Q 005559 310 ILSNSS 315 (691)
Q Consensus 310 Iit~~~ 315 (691)
||..+.
T Consensus 572 iW~~~~ 577 (712)
T KOG0283|consen 572 IWKNDS 577 (712)
T ss_pred EEeCCC
Confidence 999644
No 109
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.77 E-value=1e-07 Score=98.50 Aligned_cols=160 Identities=13% Similarity=0.035 Sum_probs=118.9
Q ss_pred EEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEeC-CceEEEecCCeEEEE
Q 005559 81 TVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANRYFCM 157 (691)
Q Consensus 81 i~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~~~~~~v 157 (691)
|.+|- |+|.++++.|-.+ +++.+.|+|++|||+ .|++.- ++.++ ...|.++++++ .-.++-.+.+..+..
T Consensus 147 i~gHl--gWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-tltGh----i~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 147 ISGHL--GWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-TLTGH----IETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred hhhcc--ceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-eecch----hheeeeeeecccCceEEEecCCCeeEE
Confidence 44454 8999999999766 678999999999999 576655 88777 45688999997 445555566778888
Q ss_pred ecCCCceEEEcCCCCcCCC-CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEE
Q 005559 158 ADFATMKVCELARPEVEEL-PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFV 231 (691)
Q Consensus 158 ~n~~~~~~~~l~~~~l~~~-~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~I 231 (691)
|+++..++.+--. ++ ....++ +.-|.-..++..+.|.++.+||..... ..|.++|.++.+-|-.-.|
T Consensus 220 wDLe~nkvIR~Yh----GHlS~V~~L---~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 220 WDLEYNKVIRHYH----GHLSGVYCL---DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQV 292 (460)
T ss_pred EechhhhhHHHhc----cccceeEEE---eccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCce
Confidence 8887544332211 11 222222 334677889999999999999988655 5689999999998876789
Q ss_pred EEEeeCCeEEEEecCCCCceeec
Q 005559 232 ACFTHDGRLVVNNTNFSSPVIDE 254 (691)
Q Consensus 232 Al~t~dg~i~I~ssd~~~~l~e~ 254 (691)
.+.+.|++|.+|+--.++..+..
T Consensus 293 it~S~D~tvrlWDl~agkt~~tl 315 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITL 315 (460)
T ss_pred EEecCCceEEEeeeccCceeEee
Confidence 99999999999987666665443
No 110
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=7.6e-07 Score=99.55 Aligned_cols=206 Identities=16% Similarity=0.168 Sum_probs=124.1
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEE-EeCCe--EE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICV-VQDGT--VY 111 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v-~~DGt--V~ 111 (691)
...+.||+|..||.++.+ ..++.|.+|+..|.....+.-.. +......|||||+ |+++ ..+|. +.
T Consensus 202 ~~p~wSPDG~~la~~s~~---------~g~~~i~i~dl~~G~~~~l~~~~--~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFE---------SGRSALVIQTLANGAVRQVASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred eeeEEcCCCCEEEEEEec---------CCCcEEEEEECCCCCeEEccCCC--CCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 468999999999988632 24678999997654444443222 4456789999998 4443 44664 77
Q ss_pred EEeCCC-CeeccccCCCccccccCeEEEEEeCCceEE-EecC-C---eEEEEecCCCceEEEcCCCCcCCCCceEEEecC
Q 005559 112 RYNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVC-VTEA-N---RYFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (691)
Q Consensus 112 ly~~~G-~~~~~sl~~~~~~~~~~V~~~~~~~~G~vl-lt~~-~---~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~ 185 (691)
+||+.+ +..+ +..+ ...+....++++|-.+ .+++ . ++|.+ +.++....++... ... ...|
T Consensus 271 ~~d~~tg~~~~--lt~~----~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~-d~~~g~~~~lt~~----~~~---~~~~ 336 (429)
T PRK03629 271 VMDLASGQIRQ--VTDG----RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV-NINGGAPQRITWE----GSQ---NQDA 336 (429)
T ss_pred EEECCCCCEEE--ccCC----CCCcCceEECCCCCEEEEEeCCCCCceEEEE-ECCCCCeEEeecC----CCC---ccCE
Confidence 778864 4433 2222 2345677888888644 3332 1 45554 4444444455321 111 1124
Q ss_pred CcCCCCCeEEEEEeC---CeEEEEecCCcc--cccC-CCeeEEEECCCCCEEEEEeeCC---eEEEEecCCCCceeeccC
Q 005559 186 KYTMTGSVEVLIGTD---AGILMLDEDGVQ--KVDD-TLSQKMAVSPNGNFVACFTHDG---RLVVNNTNFSSPVIDESC 256 (691)
Q Consensus 186 ~~S~d~~~~vl~s~d---~ti~l~d~~~~~--~~~~-~~i~~Ia~SpnG~~IAl~t~dg---~i~I~ssd~~~~l~e~d~ 256 (691)
.+||||..+++.+.+ ..|++++.++.. .+.. ......+|||||+.|+..+.++ .+++++.| ++....+..
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~ 415 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPA 415 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECcc
Confidence 578999999888764 358889876443 2222 2234678999999999998875 36677765 433333332
Q ss_pred CCCCCCCeEEEe
Q 005559 257 ESALPPEQIAWC 268 (691)
Q Consensus 257 ~~~~~p~q~~WC 268 (691)
+ .......+|.
T Consensus 416 ~-~~~~~~p~Ws 426 (429)
T PRK03629 416 T-DGQVKFPAWS 426 (429)
T ss_pred C-CCCcCCcccC
Confidence 2 2234455564
No 111
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=6.6e-07 Score=100.26 Aligned_cols=187 Identities=12% Similarity=0.133 Sum_probs=118.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EE-EEEeCCe--EE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDGT--VY 111 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv-~v~~DGt--V~ 111 (691)
...++||+|..||..+.. ..++.|.+|+..+.....+.... +.+....|||||+ |+ +...+|. +.
T Consensus 205 ~~p~wSpDG~~lay~s~~---------~g~~~i~~~dl~~g~~~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYA---------NGRPRVYLLDLETGQRELVGNFP--GMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EeeEECCCCCEEEEEEec---------CCCCEEEEEECCCCcEEEeecCC--CcccCcEECCCCCEEEEEEecCCCceEE
Confidence 457889999999998743 24689999998766555666444 6788999999997 43 4555666 55
Q ss_pred EEeCCCCeeccccCCCccccccCeEEEEEeCCceEEE-ecC----CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCC
Q 005559 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCV-TEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (691)
Q Consensus 112 ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vll-t~~----~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~ 186 (691)
+||+.+...+ .+..+ ........++++|--++ +++ .++|.+ +.++....++... ... +..|.
T Consensus 274 ~~d~~~~~~~-~Lt~~----~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~-d~~g~~~~~lt~~-----~~~--~~~~~ 340 (435)
T PRK05137 274 TMDLRSGTTT-RLTDS----PAIDTSPSYSPDGSQIVFESDRSGSPQLYVM-NADGSNPRRISFG-----GGR--YSTPV 340 (435)
T ss_pred EEECCCCceE-EccCC----CCccCceeEcCCCCEEEEEECCCCCCeEEEE-ECCCCCeEEeecC-----CCc--ccCeE
Confidence 5587654333 23322 12244567788885333 322 245555 4555555555421 111 12346
Q ss_pred cCCCCCeEEEEEeC---CeEEEEecCCcc--cc-cCCCeeEEEECCCCCEEEEEeeCC------eEEEEecC
Q 005559 187 YTMTGSVEVLIGTD---AGILMLDEDGVQ--KV-DDTLSQKMAVSPNGNFVACFTHDG------RLVVNNTN 246 (691)
Q Consensus 187 ~S~d~~~~vl~s~d---~ti~l~d~~~~~--~~-~~~~i~~Ia~SpnG~~IAl~t~dg------~i~I~ssd 246 (691)
+||||+.+++.+.+ ..|++++.++.. .. ....+..++|||||+.|++.+.++ .+++++.+
T Consensus 341 ~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 341 WSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 88999999988764 368889876543 12 223466789999999999877542 46666554
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=3.6e-07 Score=97.54 Aligned_cols=241 Identities=14% Similarity=0.098 Sum_probs=158.1
Q ss_pred ccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEE-eCCeEEEEeC-CCCeeccccCCCccccccCeEEEE
Q 005559 62 ESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVV-QDGTVYRYNI-HAELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 62 ~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~-~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
+..+|.|++|.-.=+..-. ...-.+|.|.++.=+|+|.+++++ ..|.+++|-+ .|+++. .+..| =..|...+
T Consensus 57 q~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~-v~~aH----YQ~ITcL~ 130 (476)
T KOG0646|consen 57 QLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN-VLSAH----YQSITCLK 130 (476)
T ss_pred cccCccccccccCchhhhh-hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH-HHHhh----ccceeEEE
Confidence 3468899999864322211 222234899999999999988777 9999999998 699887 44544 24589999
Q ss_pred EeCCceEEEecCCe----EEEEecCCCceEEEcCCCC--cCCCCceEEEecC--CcCCCCCeEEEEEeCCeEEEEecCCc
Q 005559 140 FWGNGVVCVTEANR----YFCMADFATMKVCELARPE--VEELPHCVAVIEP--KYTMTGSVEVLIGTDAGILMLDEDGV 211 (691)
Q Consensus 140 ~~~~G~vllt~~~~----~~~v~n~~~~~~~~l~~~~--l~~~~~~w~vi~~--~~S~d~~~~vl~s~d~ti~l~d~~~~ 211 (691)
|++||-.++|++.+ +|.+.++-.+....-+.|. ..+ |...|..- .+.+.+..+.+++.|+|+++||...-
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~--HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD--HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc--CcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 99999999998864 4444443322111111110 111 11222211 23334567788888999999998844
Q ss_pred c----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCC
Q 005559 212 Q----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQ 287 (691)
Q Consensus 212 ~----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~ 287 (691)
. -..+.++..|+++|-+..+=+++++|.|++..-- . . ++..+.=- .-+-...-...-.++|+.
T Consensus 209 ~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~-~-------~----~~~~~~v~-~k~~~~~~t~~~~~~Gh~ 275 (476)
T KOG0646|consen 209 VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLF-K-------L----SGQSAGVN-QKGRHEENTQINVLVGHE 275 (476)
T ss_pred eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehh-c-------C----Cccccccc-ccccccccceeeeecccc
Confidence 4 3467889999999999999999999999976421 0 0 00000000 000000001123677887
Q ss_pred CC----ceEeecCCCeEEeecCCc-eEEEecCcceeeeccc
Q 005559 288 AE----PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVP 323 (691)
Q Consensus 288 ~~----~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp 323 (691)
+. .+.++.|+...++...|| |+||...+.+.|+++.
T Consensus 276 ~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 276 NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 72 567788999999999999 9999999999888876
No 113
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=7.9e-07 Score=99.38 Aligned_cols=187 Identities=18% Similarity=0.175 Sum_probs=116.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EE-EEEeCCeEEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDGTVYRY 113 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv-~v~~DGtV~ly 113 (691)
...+.||+|..||..++. ...+.|.+|+..+.....+.-.. +.+....||||++ |+ +...+|...+|
T Consensus 199 ~~p~wSPDG~~la~~s~~---------~~~~~I~~~dl~~g~~~~l~~~~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFE---------SKKPVVYVHDLATGRRRVVANFK--GSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred ccceEcCCCCEEEEEEcc---------CCCcEEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEccCCCceEE
Confidence 357899999999998743 24678999998655444454223 5677899999997 44 45678887777
Q ss_pred --eCCCCeeccccCCCccccccCeEEEEEeCCceEEE-ecC----CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCC
Q 005559 114 --NIHAELIEPNASMGKECFEENVVECVFWGNGVVCV-TEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (691)
Q Consensus 114 --~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vll-t~~----~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~ 186 (691)
|..|...+ .+..+ ...+..+.++++|--++ +++ .++|.++ .++....++.. .... ...|.
T Consensus 268 ~~d~~~~~~~-~lt~~----~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~-~~~g~~~~lt~----~g~~---~~~~~ 334 (427)
T PRK02889 268 TVNADGSGLR-RLTQS----SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP-ASGGAAQRVTF----TGSY---NTSPR 334 (427)
T ss_pred EEECCCCCcE-ECCCC----CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE-CCCCceEEEec----CCCC---cCceE
Confidence 55544333 23222 12234567788885443 332 1455553 33333333321 1111 12457
Q ss_pred cCCCCCeEEEEEeCC---eEEEEecCCcc--cc-cCCCeeEEEECCCCCEEEEEeeCC---eEEEEecC
Q 005559 187 YTMTGSVEVLIGTDA---GILMLDEDGVQ--KV-DDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (691)
Q Consensus 187 ~S~d~~~~vl~s~d~---ti~l~d~~~~~--~~-~~~~i~~Ia~SpnG~~IAl~t~dg---~i~I~ssd 246 (691)
|||||+.+++.+.++ .|++|+.++.. .. ..+.....+|||||+.|++.+.++ .+++.+.+
T Consensus 335 ~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 335 ISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 889999999887754 69999976443 22 222345789999999999988653 35555544
No 114
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=3.3e-07 Score=90.76 Aligned_cols=191 Identities=18% Similarity=0.182 Sum_probs=129.4
Q ss_pred CCEEEEcC--CCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEE---EEecCCCCCEEEEEecCCCe---EEEEEe
Q 005559 35 RNKVACAP--FGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE---TVWKNPGGRLIGMSWSEDQT---LICVVQ 106 (691)
Q Consensus 35 ~~~vA~sp--~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~s---i~~~~~~~~Iv~~~fs~de~---Lv~v~~ 106 (691)
.+.|+.+. ||+.+|..+ .|+.|-||...|..-.+ ..-|+ +.|.++.|-|.|- |+|+++
T Consensus 59 Vwqv~wahPk~G~iLAScs------------YDgkVIiWke~~g~w~k~~e~~~h~--~SVNsV~wapheygl~LacasS 124 (299)
T KOG1332|consen 59 VWKVAWAHPKFGTILASCS------------YDGKVIIWKEENGRWTKAYEHAAHS--ASVNSVAWAPHEYGLLLACASS 124 (299)
T ss_pred eeEEeecccccCcEeeEee------------cCceEEEEecCCCchhhhhhhhhhc--ccceeecccccccceEEEEeeC
Confidence 35777777 899998885 89999999986653332 23344 6899999999765 579999
Q ss_pred CCeEEEEeCCCC--e-eccccCCCccccccCeEEEEEeCC---c-----------eEEEecC-CeEEEEecCCCceEEEc
Q 005559 107 DGTVYRYNIHAE--L-IEPNASMGKECFEENVVECVFWGN---G-----------VVCVTEA-NRYFCMADFATMKVCEL 168 (691)
Q Consensus 107 DGtV~ly~~~G~--~-~~~sl~~~~~~~~~~V~~~~~~~~---G-----------~vllt~~-~~~~~v~n~~~~~~~~l 168 (691)
||+|.+.+...+ - .......| +.+|..+.-.|. | .-++++. .+.+.||.+++. .|.+
T Consensus 125 DG~vsvl~~~~~g~w~t~ki~~aH----~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~ 199 (299)
T KOG1332|consen 125 DGKVSVLTYDSSGGWTTSKIVFAH----EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKL 199 (299)
T ss_pred CCcEEEEEEcCCCCccchhhhhcc----ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhh
Confidence 999999977544 1 11122223 466776665443 4 2245544 357788887754 3333
Q ss_pred CCCCcCCC-----CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc--------cccCCCeeEEEECCCCCEEEEEe
Q 005559 169 ARPEVEEL-----PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDTLSQKMAVSPNGNFVACFT 235 (691)
Q Consensus 169 ~~~~l~~~-----~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~--------~~~~~~i~~Ia~SpnG~~IAl~t 235 (691)
... +..+ .-.|+ |.......+++..+.|+++++|..++.. ...+.++.++++|+.|.+||...
T Consensus 200 e~~-l~~H~dwVRDVAwa---P~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 200 ERT-LEGHKDWVRDVAWA---PSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred hhh-hhhcchhhhhhhhc---cccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 211 1111 12232 3444456788999999999999888442 23457799999999999999999
Q ss_pred eCCeEEEEecCCC
Q 005559 236 HDGRLVVNNTNFS 248 (691)
Q Consensus 236 ~dg~i~I~ssd~~ 248 (691)
.|+++.+|.-+.+
T Consensus 276 GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 276 GDNKVTLWKENVD 288 (299)
T ss_pred CCcEEEEEEeCCC
Confidence 9999999976544
No 115
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=1.2e-06 Score=97.97 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=106.7
Q ss_pred CCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeC---CeEEEEeCC-C
Q 005559 43 FGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQD---GTVYRYNIH-A 117 (691)
Q Consensus 43 ~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~D---GtV~ly~~~-G 117 (691)
+|.-||.+..... ...+..|.+|+.+|.-...+..+. +.+.+..|||||+ |+.++.+ .++++||+. |
T Consensus 167 f~~ria~v~~~~~------~~~~~~i~i~d~dg~~~~~lt~~~--~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg 238 (429)
T PRK01742 167 FRTRIAYVVQKNG------GSQPYEVRVADYDGFNQFIVNRSS--QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG 238 (429)
T ss_pred cCCEEEEEEEEcC------CCceEEEEEECCCCCCceEeccCC--CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC
Confidence 3567777653211 123579999999998777766555 6799999999998 4555543 369999986 4
Q ss_pred Ceec-cccCCCccccccCeEEEEEeCCceEEEe-c--CC--eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCC
Q 005559 118 ELIE-PNASMGKECFEENVVECVFWGNGVVCVT-E--AN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG 191 (691)
Q Consensus 118 ~~~~-~sl~~~~~~~~~~V~~~~~~~~G~vllt-~--~~--~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~ 191 (691)
+... ..+..+ .....++++|-.++. . ++ ++|.+ +.++....++... . ..+..|.|||||
T Consensus 239 ~~~~l~~~~g~-------~~~~~wSPDG~~La~~~~~~g~~~Iy~~-d~~~~~~~~lt~~-----~--~~~~~~~wSpDG 303 (429)
T PRK01742 239 ARKVVASFRGH-------NGAPAFSPDGSRLAFASSKDGVLNIYVM-GANGGTPSQLTSG-----A--GNNTEPSWSPDG 303 (429)
T ss_pred ceEEEecCCCc-------cCceeECCCCCEEEEEEecCCcEEEEEE-ECCCCCeEeeccC-----C--CCcCCEEECCCC
Confidence 3322 123222 335688899954433 2 23 24433 4454555555431 1 123345788999
Q ss_pred CeEEEEEe-CC--eEEEEecCCcc--cccCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 192 SVEVLIGT-DA--GILMLDEDGVQ--KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 192 ~~~vl~s~-d~--ti~l~d~~~~~--~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
+.+++.+. ++ .||.++.++.. ...... ...++||||++||+.+.++ +.+++
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~~~~-i~~~D 359 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMINGDN-VVKQD 359 (429)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEcCCC-EEEEE
Confidence 98887775 44 45555555433 221111 3578999999999887644 33343
No 116
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.71 E-value=4.1e-07 Score=96.65 Aligned_cols=176 Identities=11% Similarity=0.130 Sum_probs=118.1
Q ss_pred CCeEEEEecCchhhhhhcccCCCeEEEEcCCCc-------eeE----E-----------EEecCCCCCEEEEEecCC--C
Q 005559 44 GGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-------LIS----E-----------TVWKNPGGRLIGMSWSED--Q 99 (691)
Q Consensus 44 GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~-------ll~----s-----------i~~~~~~~~Iv~~~fs~d--e 99 (691)
|..+|+.. .++.|.||+.+=. .|+ + -.+|. ..|.++.|..+ .
T Consensus 192 gNyvAiGt------------mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHT--davl~Ls~n~~~~n 257 (463)
T KOG0270|consen 192 GNYVAIGT------------MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHT--DAVLALSWNRNFRN 257 (463)
T ss_pred cceEEEec------------cCceeEEeccccccccccceeechhhhhhhhhhcccccccccch--HHHHHHHhccccce
Confidence 44778763 7899999997631 111 1 11333 45788999875 3
Q ss_pred eEEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEeC-CceEEEecCCe-EEEEecCC----CceEEEcCCCC
Q 005559 100 TLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANR-YFCMADFA----TMKVCELARPE 172 (691)
Q Consensus 100 ~Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~~~-~~~v~n~~----~~~~~~l~~~~ 172 (691)
-|++++.|.||++||+ .|+..+ ++.++ ..+|....+.+ .+.++++++++ .+.+.+.. .++-|++..-
T Consensus 258 VLaSgsaD~TV~lWD~~~g~p~~-s~~~~----~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~- 331 (463)
T KOG0270|consen 258 VLASGSADKTVKLWDVDTGKPKS-SITHH----GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE- 331 (463)
T ss_pred eEEecCCCceEEEEEcCCCCcce-ehhhc----CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc-
Confidence 3789999999999999 488776 66655 46798888877 89999999964 44444432 2233433210
Q ss_pred cCCCCceEEEecCCcCCCCCeEEEE-EeCCeEEEEecCCcc------cccCCCeeEEEECCCCC-EEEEEeeCCeEEEEe
Q 005559 173 VEELPHCVAVIEPKYTMTGSVEVLI-GTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGN-FVACFTHDGRLVVNN 244 (691)
Q Consensus 173 l~~~~~~w~vi~~~~S~d~~~~vl~-s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~-~IAl~t~dg~i~I~s 244 (691)
-..-.|. +.....++. ..||+||-+|..... ..|.++|..+++++.-. ++++.+.++++++|+
T Consensus 332 --VEkv~w~-------~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 332 --VEKVAWD-------PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred --eEEEEec-------CCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 0022232 122222333 348899999988553 56999999999998654 789999999999998
Q ss_pred cCCC
Q 005559 245 TNFS 248 (691)
Q Consensus 245 sd~~ 248 (691)
.+-.
T Consensus 403 ~~~~ 406 (463)
T KOG0270|consen 403 FDVD 406 (463)
T ss_pred ecCC
Confidence 6543
No 117
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2.8e-05 Score=91.31 Aligned_cols=209 Identities=10% Similarity=0.173 Sum_probs=143.8
Q ss_pred CCCeEEEEcCCC-------ceeEEEEecCCCCCEEEEEecCCCe--EEEEEeCCeEEEEeCCCCeeccccCCCccccccC
Q 005559 64 ALRKLRIFNSAG-------VLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNIHAELIEPNASMGKECFEEN 134 (691)
Q Consensus 64 ~~~~I~Iys~sG-------~ll~si~~~~~~~~Iv~~~fs~de~--Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~ 134 (691)
.++.|-+|+.+- .+|.+..-|. |.|.++.|++... |..+.+||.|.|||+.---..++++..+- .++
T Consensus 88 edG~I~ly~p~~~~~~~~~~~la~~~~h~--G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~--~~e 163 (1049)
T KOG0307|consen 88 EDGNIVLYDPASIIANASEEVLATKSKHT--GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP--PSE 163 (1049)
T ss_pred cCCceEEecchhhccCcchHHHhhhcccC--CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC--ccc
Confidence 589999999753 2566677777 9999999999644 56899999999999974223334432211 344
Q ss_pred eEEEEEeCCc--eEEEecCC-eEEEEecCCCc-eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCC----eEEEE
Q 005559 135 VVECVFWGNG--VVCVTEAN-RYFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA----GILML 206 (691)
Q Consensus 135 V~~~~~~~~G--~vllt~~~-~~~~v~n~~~~-~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~----ti~l~ 206 (691)
|..+ -|+.. -++++++. ....|||+... .+..+.+. ..-..|+++ .|.|++.+-++++.+. .|.+|
T Consensus 164 I~~l-sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~---~~~~~~S~l--~WhP~~aTql~~As~dd~~PviqlW 237 (1049)
T KOG0307|consen 164 IKCL-SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT---PGRMHCSVL--AWHPDHATQLLVASGDDSAPVIQLW 237 (1049)
T ss_pred ceEe-ccchhhhHHhhccCCCCCceeccccCCCcccccccC---CCccceeee--eeCCCCceeeeeecCCCCCceeEee
Confidence 5443 37644 33444443 36677887633 22333331 112457777 5889998888877743 79999
Q ss_pred ecCCcc------cccCCCeeEEEECCCC-CEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEE---EE
Q 005559 207 DEDGVQ------KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVL---LY 276 (691)
Q Consensus 207 d~~~~~------~~~~~~i~~Ia~SpnG-~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davv---l~ 276 (691)
|..... ..|...|.+|+++|.+ .++++-..|+++.+|+..-++++.++.+. .....++.||..+.=+ .+
T Consensus 238 DlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 238 DLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSVMAAAS 316 (1049)
T ss_pred cccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcchhhhhe
Confidence 966333 4688889999999998 66777778999999999888999999874 4477899999877632 35
Q ss_pred EcCeEEE
Q 005559 277 WNDMLVM 283 (691)
Q Consensus 277 ~~~~l~l 283 (691)
++..|-+
T Consensus 317 fdgkI~I 323 (1049)
T KOG0307|consen 317 FDGKISI 323 (1049)
T ss_pred eccceee
Confidence 6654433
No 118
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.71 E-value=8.5e-07 Score=99.34 Aligned_cols=187 Identities=15% Similarity=0.109 Sum_probs=116.9
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeE-E-EEEeCCe--EE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-I-CVVQDGT--VY 111 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~L-v-~v~~DGt--V~ 111 (691)
...+.||+|..||..+.. ...+.|.+|+.++.....+.-.. +......||||++. + +...+|. ++
T Consensus 207 ~~p~wSpDg~~la~~s~~---------~~~~~l~~~dl~~g~~~~l~~~~--g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFE---------RGRSAIYVQDLATGQRELVASFR--GINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred ccccCCCCCCEEEEEecC---------CCCcEEEEEECCCCCEEEeccCC--CCccCceECCCCCEEEEEEeCCCCceEE
Confidence 356789999999998743 24678999998765555554333 55667899999974 3 3455664 77
Q ss_pred EEeCCCCeeccccCCCccccccCeEEEEEeCCceEEE-ecC----CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCC
Q 005559 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCV-TEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (691)
Q Consensus 112 ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vll-t~~----~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~ 186 (691)
+||+.+...+ .+..+ ........++++|-.++ +++ .++|.+ ++++....++... ... ...|.
T Consensus 276 ~~d~~~g~~~-~lt~~----~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~-dl~~g~~~~lt~~---g~~----~~~~~ 342 (433)
T PRK04922 276 VMDLGSRQLT-RLTNH----FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRV-AASGGSAERLTFQ---GNY----NARAS 342 (433)
T ss_pred EEECCCCCeE-ECccC----CCCccceEECCCCCEEEEEECCCCCceEEEE-ECCCCCeEEeecC---CCC----ccCEE
Confidence 7888643322 22222 12234567888885443 332 136655 4444444444311 111 11346
Q ss_pred cCCCCCeEEEEEeCC---eEEEEecCCcc--cccCC-CeeEEEECCCCCEEEEEeeC---CeEEEEecC
Q 005559 187 YTMTGSVEVLIGTDA---GILMLDEDGVQ--KVDDT-LSQKMAVSPNGNFVACFTHD---GRLVVNNTN 246 (691)
Q Consensus 187 ~S~d~~~~vl~s~d~---ti~l~d~~~~~--~~~~~-~i~~Ia~SpnG~~IAl~t~d---g~i~I~ssd 246 (691)
+||||+.+++.+.++ .|++|+.++.. .+..+ .....++||||++|+..+.+ +.|++++.+
T Consensus 343 ~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 343 VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred ECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 889999998887643 68999976543 23222 34567999999999988764 367777765
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=4.8e-06 Score=85.14 Aligned_cols=215 Identities=18% Similarity=0.245 Sum_probs=147.3
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeC
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI 115 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~ 115 (691)
..|.++|.++-+.+.+ .|+++++|+-.++.+.-.--+. ++|.+-.|.++-+.+++.-||.||.||+
T Consensus 17 S~v~f~~~~~~LLvss------------WDgslrlYdv~~~~l~~~~~~~--~plL~c~F~d~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSS------------WDGSLRLYDVPANSLKLKFKHG--APLLDCAFADESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred eeEEEcCcCCcEEEEe------------ccCcEEEEeccchhhhhheecC--CceeeeeccCCceEEEeccCceEEEEEe
Confidence 3677889989888875 8999999998877443333244 6899999998888999999999999999
Q ss_pred CCCeeccccCCCccccccCeEEEEEe-CCceEEEecCCeEEEEecCCCceEEEcCC-CCcCCCCceEEEecCCcCCCCCe
Q 005559 116 HAELIEPNASMGKECFEENVVECVFW-GNGVVCVTEANRYFCMADFATMKVCELAR-PEVEELPHCVAVIEPKYTMTGSV 193 (691)
Q Consensus 116 ~G~~~~~sl~~~~~~~~~~V~~~~~~-~~G~vllt~~~~~~~v~n~~~~~~~~l~~-~~l~~~~~~w~vi~~~~S~d~~~ 193 (691)
.+.-.. .++.| +.+|..+... ..|.++..+=.+.+.+|+... ..... .......-|+.+ .|..
T Consensus 83 n~~~~~-~igth----~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~---~~~~~~~d~~kkVy~~~v-------~g~~ 147 (323)
T KOG1036|consen 83 NTGNED-QIGTH----DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN---KVVVGTFDQGKKVYCMDV-------SGNR 147 (323)
T ss_pred cCCcce-eeccC----CCceEEEEeeccCCeEEEcccCccEEEEeccc---cccccccccCceEEEEec-------cCCE
Confidence 754433 55666 4567766655 478877776677888888432 11110 000011344444 6788
Q ss_pred EEEEEeCCeEEEEecCCcc-c------ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCC----CceeeccCCC----
Q 005559 194 EVLIGTDAGILMLDEDGVQ-K------VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS----SPVIDESCES---- 258 (691)
Q Consensus 194 ~vl~s~d~ti~l~d~~~~~-~------~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~----~~l~e~d~~~---- 258 (691)
+|....+..+..||...+. . .-.-++..|++=||+.=-|+.+-+|++-|=.-|.+ +.-.-|.+|.
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~ 227 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK 227 (323)
T ss_pred EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC
Confidence 8888889999999998665 1 11234778999999888888888999987655544 1112333332
Q ss_pred ----CCCCCeEEEe---------cCceEEEEEcC
Q 005559 259 ----ALPPEQIAWC---------GMDSVLLYWND 279 (691)
Q Consensus 259 ----~~~p~q~~WC---------G~davvl~~~~ 279 (691)
-.+...|++. |+|.+|..|+-
T Consensus 228 ~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 228 DTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred CceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 1233455553 99999999973
No 120
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=2.9e-06 Score=95.06 Aligned_cols=185 Identities=15% Similarity=0.237 Sum_probs=118.8
Q ss_pred CCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEe---CCeEEEEeCCC
Q 005559 42 PFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ---DGTVYRYNIHA 117 (691)
Q Consensus 42 p~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~---DGtV~ly~~~G 117 (691)
.+++.||-+.+... .......|.+++.+|.....+..+. +.+....|||||+ |+.++. ++.+.+||+.+
T Consensus 163 ~f~~~iafv~~~~~-----~~~~~~~l~~~d~dg~~~~~lt~~~--~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~ 235 (435)
T PRK05137 163 YFDTRIVYVAESGP-----KNKRIKRLAIMDQDGANVRYLTDGS--SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET 235 (435)
T ss_pred cCCCeEEEEEeeCC-----CCCcceEEEEECCCCCCcEEEecCC--CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC
Confidence 34456776653210 0012568999999999988888766 7899999999998 455543 46799999864
Q ss_pred CeeccccCCCccccccCeEEEEEeCCceEE-EecC----CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCC
Q 005559 118 ELIEPNASMGKECFEENVVECVFWGNGVVC-VTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGS 192 (691)
Q Consensus 118 ~~~~~sl~~~~~~~~~~V~~~~~~~~G~vl-lt~~----~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~ 192 (691)
...+ .+... ...+....++++|-.+ ++.+ .++|.+ +.++....++... +. ....|.|||||+
T Consensus 236 g~~~-~l~~~----~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~-d~~~~~~~~Lt~~-----~~--~~~~~~~spDG~ 302 (435)
T PRK05137 236 GQRE-LVGNF----PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTM-DLRSGTTTRLTDS-----PA--IDTSPSYSPDGS 302 (435)
T ss_pred CcEE-EeecC----CCcccCcEECCCCCEEEEEEecCCCceEEEE-ECCCCceEEccCC-----CC--ccCceeEcCCCC
Confidence 3222 22221 2345667888899543 3332 346555 5555556666531 11 123467889999
Q ss_pred eEEEEEeC---CeEEEEecCCcc--cc--cCCCeeEEEECCCCCEEEEEeeC-C--eEEEEecC
Q 005559 193 VEVLIGTD---AGILMLDEDGVQ--KV--DDTLSQKMAVSPNGNFVACFTHD-G--RLVVNNTN 246 (691)
Q Consensus 193 ~~vl~s~d---~ti~l~d~~~~~--~~--~~~~i~~Ia~SpnG~~IAl~t~d-g--~i~I~ssd 246 (691)
.+++.+.. ..||+++.++.. .. ..+.+...++||||+.||+.+.+ + .|++++.+
T Consensus 303 ~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 303 QIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred EEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 99888753 369999987654 22 24556778999999999998754 2 56666644
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=5.1e-07 Score=96.43 Aligned_cols=193 Identities=13% Similarity=0.118 Sum_probs=131.2
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRY 113 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly 113 (691)
..++.+|.|-.++.. +..+.|.+|.. +|.+|..+..|. -.|.++-||.|+. +++++.||-|++|
T Consensus 85 ~al~s~n~G~~l~ag------------~i~g~lYlWelssG~LL~v~~aHY--Q~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 85 HALASSNLGYFLLAG------------TISGNLYLWELSSGILLNVLSAHY--QSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred eeeecCCCceEEEee------------cccCcEEEEEeccccHHHHHHhhc--cceeEEEEeCCCcEEEecCCCccEEEE
Confidence 345566666655433 26899999994 899999999998 7899999999987 5799999999999
Q ss_pred eCC--------CC--eeccccCCCccccccCeEEEEEeCC---ceEEEecCCeEEEEecCCCc-eEEEcCCCCcCCCCce
Q 005559 114 NIH--------AE--LIEPNASMGKECFEENVVECVFWGN---GVVCVTEANRYFCMADFATM-KVCELARPEVEELPHC 179 (691)
Q Consensus 114 ~~~--------G~--~~~~sl~~~~~~~~~~V~~~~~~~~---G~vllt~~~~~~~v~n~~~~-~~~~l~~~~l~~~~~~ 179 (691)
.+. +. .. +.+..| .-.|.+..+... +.++-.+..+...+|++... .+..+.-| ..+++
T Consensus 151 ~l~~lv~a~~~~~~~p~-~~f~~H----tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp---~si~a 222 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPL-HIFSDH----TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP---SSIKA 222 (476)
T ss_pred EEEeecccccCCCccce-eeeccC----cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC---Cccee
Confidence 542 11 11 244455 455888887643 34444444678889988743 22222211 22455
Q ss_pred EEEecCCcCCCCCeEEEEEeCCeEEEEecCCc-----------------c----cccCC--CeeEEEECCCCCEEEEEee
Q 005559 180 VAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV-----------------Q----KVDDT--LSQKMAVSPNGNFVACFTH 236 (691)
Q Consensus 180 w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~-----------------~----~~~~~--~i~~Ia~SpnG~~IAl~t~ 236 (691)
.++- |.+......+.+|.|++.+..+. + ..+.+ +|+.+++|.||..|++++.
T Consensus 223 v~lD-----pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~ 297 (476)
T KOG0646|consen 223 VALD-----PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE 297 (476)
T ss_pred EEEc-----ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence 5542 34444444455777777554311 1 13445 8999999999999999999
Q ss_pred CCeEEEEecCCCCceeecc
Q 005559 237 DGRLVVNNTNFSSPVIDES 255 (691)
Q Consensus 237 dg~i~I~ssd~~~~l~e~d 255 (691)
||++.||...-.+++....
T Consensus 298 dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 298 DGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CCCEEEEecchHHHHHHHh
Confidence 9999999887566665443
No 122
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.68 E-value=2.1e-07 Score=95.90 Aligned_cols=183 Identities=13% Similarity=0.176 Sum_probs=127.3
Q ss_pred EcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCC
Q 005559 40 CAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAE 118 (691)
Q Consensus 40 ~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~ 118 (691)
....|..+.+--|+. +.+. .++|.+|+||+- .|+.+.++-.|. +.|..+-|+ +|-.|+.+.|.++.+|++...
T Consensus 234 ~GHtGSVLCLqyd~r--viis-GSSDsTvrvWDv~tge~l~tlihHc--eaVLhlrf~-ng~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 234 TGHTGSVLCLQYDER--VIVS-GSSDSTVRVWDVNTGEPLNTLIHHC--EAVLHLRFS-NGYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred hcCCCcEEeeeccce--EEEe-cCCCceEEEEeccCCchhhHHhhhc--ceeEEEEEe-CCEEEEecCCceeEEEeccCc
Confidence 344455555544433 2222 358999999995 899999999998 899999999 888999999999999998642
Q ss_pred e---eccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceEE-EcCCCCcCCCCceEEEecCCcCCCCCe
Q 005559 119 L---IEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKVC-ELARPEVEELPHCVAVIEPKYTMTGSV 193 (691)
Q Consensus 119 ~---~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~~-~l~~~~l~~~~~~w~vi~~~~S~d~~~ 193 (691)
- ...-+-+| ...|.-+.|.+. .+++++ .+...+|+....... .+. ++....+.+ +| .|..
T Consensus 308 s~it~rrVLvGH----rAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~-----gHkRGIACl--QY--r~rl 372 (499)
T KOG0281|consen 308 TDITLRRVLVGH----RAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLN-----GHKRGIACL--QY--RDRL 372 (499)
T ss_pred hHHHHHHHHhhh----hhheeeeccccc--eEEEecCCceEEEEeccceeeehhhh-----cccccceeh--hc--cCeE
Confidence 1 11123333 244655555544 444444 568888887754433 333 334444443 44 7889
Q ss_pred EEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 194 EVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 194 ~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
+|..+.|+||.+|+...-. ..|..-|..|.| |.+.|.++..||+|+||+-
T Consensus 373 vVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 373 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred EEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEec
Confidence 9999999999999987332 456667777776 4568999999999999964
No 123
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.67 E-value=8.8e-06 Score=87.80 Aligned_cols=236 Identities=16% Similarity=0.173 Sum_probs=146.1
Q ss_pred ccccccEEEecccccccCCCCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEE-ecCCCC
Q 005559 10 WQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETV-WKNPGG 88 (691)
Q Consensus 10 W~~l~~~~yr~~~~y~~~w~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~-~~~~~~ 88 (691)
|..=|+.+.++..+++-.=.+ -...|.+.++|..| +.| +.++|.||+..|..+..-. -|. |
T Consensus 227 w~~~~~~l~k~~~~fek~ekk---~Vl~v~F~engdvi--TgD-----------S~G~i~Iw~~~~~~~~k~~~aH~--g 288 (626)
T KOG2106|consen 227 WTLRGGSLVKRQGIFEKREKK---FVLCVTFLENGDVI--TGD-----------SGGNILIWSKGTNRISKQVHAHD--G 288 (626)
T ss_pred EEccCCceEEEeeccccccce---EEEEEEEcCCCCEE--eec-----------CCceEEEEeCCCceEEeEeeecC--C
Confidence 655566777776666422111 23478899999965 443 6899999999988877644 444 8
Q ss_pred CEEEEEecCCCeEEEEEeCCeEEEEeCCCCe-eccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCC------
Q 005559 89 RLIGMSWSEDQTLICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFA------ 161 (691)
Q Consensus 89 ~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~-~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~------ 161 (691)
.|.++.--.+|.|++...|..|..||-.=+. ..+.++.. -+.|..+.--..++.+-|+.+.+.. -+++
T Consensus 289 gv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~----~G~iRtv~e~~~di~vGTtrN~iL~-Gt~~~~f~~~ 363 (626)
T KOG2106|consen 289 GVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQ----FGPIRTVAEGKGDILVGTTRNFILQ-GTLENGFTLT 363 (626)
T ss_pred ceEEEEEecCccEeecCccceEEeccccccccccccCchh----cCCeeEEecCCCcEEEeeccceEEE-eeecCCceEE
Confidence 8999999999999999999999999832222 22233322 2345544333344444443332111 1111
Q ss_pred ----CceEEEcCCCC-----cC-----------CCCceEEEe------cCCcCCCCCeEEEEEeCCeEEEEecCCcc---
Q 005559 162 ----TMKVCELARPE-----VE-----------ELPHCVAVI------EPKYTMTGSVEVLIGTDAGILMLDEDGVQ--- 212 (691)
Q Consensus 162 ----~~~~~~l~~~~-----l~-----------~~~~~w~vi------~~~~S~d~~~~vl~s~d~ti~l~d~~~~~--- 212 (691)
+..+|-|.-.+ ++ .+...|+.+ ..+|.|+| ++++....|.-+++|.+...
T Consensus 364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~ 442 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT 442 (626)
T ss_pred EEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE
Confidence 11222221100 00 112233321 22577888 77777778888888888655
Q ss_pred -cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC-CCCceeeccCCCCCCCCeEEEec
Q 005559 213 -KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSPVIDESCESALPPEQIAWCG 269 (691)
Q Consensus 213 -~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd-~~~~l~e~d~~~~~~p~q~~WCG 269 (691)
.....|++.|++||+|.++|.++.|+.|+|+..+ -++.+..+...+-++..-+.|..
T Consensus 443 ~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 443 IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC
Confidence 3357899999999999999999999999887643 25666555432224556777764
No 124
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.65 E-value=8.9e-07 Score=88.74 Aligned_cols=189 Identities=14% Similarity=0.144 Sum_probs=124.4
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC-------Cc-eeEEEEecCCCCCEEEEEecCCCe-EEEE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-------GV-LISETVWKNPGGRLIGMSWSEDQT-LICV 104 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-------G~-ll~si~~~~~~~~Iv~~~fs~de~-Lv~v 104 (691)
....+-+++.|..|+...|... ...+.|.+|+.. ++ ++..|+-+. ..|..+.|+|-++ ++..
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~m-------g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQM-------GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIAG 165 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhc-------CcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEEe
Confidence 4457788888888877765321 256788888754 44 478888776 7899999999766 6789
Q ss_pred EeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecCCe-EEEEecCCCce-EEEcCCCCcCCCCceEE
Q 005559 105 VQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-YFCMADFATMK-VCELARPEVEELPHCVA 181 (691)
Q Consensus 105 ~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~-~~~v~n~~~~~-~~~l~~~~l~~~~~~w~ 181 (691)
.+||.+..||.. |+....+-..| ...|.+.++++++-.++|++.+ .-.+.++..-. ..++. ...|-.-+
T Consensus 166 he~G~is~~da~~g~~~v~s~~~h----~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~----te~PvN~a 237 (327)
T KOG0643|consen 166 HEDGSISIYDARTGKELVDSDEEH----SSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT----TERPVNTA 237 (327)
T ss_pred cCCCcEEEEEcccCceeeechhhh----ccccccccccCCcceEEecccCccceeeeccceeeEEEee----ecccccce
Confidence 999999999994 65443355555 4679999999999999998854 33444443221 11121 01232223
Q ss_pred EecCCcCCCCCeEEEEEeCCeEEEEecC----C----------------cccccCCCeeEEEECCCCCEEEEEeeCCeEE
Q 005559 182 VIEPKYTMTGSVEVLIGTDAGILMLDED----G----------------VQKVDDTLSQKMAVSPNGNFVACFTHDGRLV 241 (691)
Q Consensus 182 vi~~~~S~d~~~~vl~s~d~ti~l~d~~----~----------------~~~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~ 241 (691)
+| ||....+|+.+-.. -.-+..+ | ..+.|-|||..++|+|+|+--|++++||.++
T Consensus 238 ai----sP~~d~VilgGGqe-A~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 238 AI----SPLLDHVILGGGQE-AMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred ec----ccccceEEecCCce-eeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence 33 34444444333211 1111111 1 1147899999999999999999999999998
Q ss_pred EEe
Q 005559 242 VNN 244 (691)
Q Consensus 242 I~s 244 (691)
+-.
T Consensus 313 ~h~ 315 (327)
T KOG0643|consen 313 LHH 315 (327)
T ss_pred EEE
Confidence 863
No 125
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=1.1e-05 Score=90.23 Aligned_cols=163 Identities=13% Similarity=0.203 Sum_probs=104.4
Q ss_pred CCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeE-EEEEe---CCeEEEEeCC-CCeec-cccCCCccccccCeEEE
Q 005559 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQ---DGTVYRYNIH-AELIE-PNASMGKECFEENVVEC 138 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~---DGtV~ly~~~-G~~~~-~sl~~~~~~~~~~V~~~ 138 (691)
...|.+++.+|.-...+.... +.+....|||||+. +.++. +..+.+|++. |+... ..+.. .+...
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~--~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~-------~~~~~ 248 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSP--QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR-------HNGAP 248 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCC--CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-------CcCCe
Confidence 558999999998777776554 68999999999984 44432 3467888886 44322 12322 23456
Q ss_pred EEeCCceEEE-e-c-CC--eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCC---eEEEEecCC
Q 005559 139 VFWGNGVVCV-T-E-AN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA---GILMLDEDG 210 (691)
Q Consensus 139 ~~~~~G~vll-t-~-~~--~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~---ti~l~d~~~ 210 (691)
.++++|..++ + . ++ ++|. ++.++....++... + ..+..|.|||||+.+++.+..+ .||.++.++
T Consensus 249 ~~SPDG~~La~~~~~~g~~~I~~-~d~~tg~~~~lt~~-----~--~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 249 AFSPDGSKLAFALSKTGSLNLYV-MDLASGQIRQVTDG-----R--SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred EECCCCCEEEEEEcCCCCcEEEE-EECCCCCEEEccCC-----C--CCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 8889995444 2 2 22 3444 46665556666531 1 1234567899999998888643 688888775
Q ss_pred cc--cc--cCCCeeEEEECCCCCEEEEEeeC-C--eEEEEe
Q 005559 211 VQ--KV--DDTLSQKMAVSPNGNFVACFTHD-G--RLVVNN 244 (691)
Q Consensus 211 ~~--~~--~~~~i~~Ia~SpnG~~IAl~t~d-g--~i~I~s 244 (691)
.. .+ ..+.....++||||++||+.+.+ | .|++++
T Consensus 321 g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~d 361 (429)
T PRK03629 321 GAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 361 (429)
T ss_pred CCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEE
Confidence 43 22 23345678999999999987754 2 355554
No 126
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=5.7e-07 Score=89.54 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=124.9
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCC-CeE-EEEEeCCeEEEEeC--CCCeeccccCCCccccccCeEE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED-QTL-ICVVQDGTVYRYNI--HAELIEPNASMGKECFEENVVE 137 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~d-e~L-v~v~~DGtV~ly~~--~G~~~~~sl~~~~~~~~~~V~~ 137 (691)
+.|++|++|++ -++-+.|+++|. ..|....|+|- ..| ..++.||+.++||+ .|+.+. +..| +.+|..
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~gh~--~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~--i~ah----~~Eil~ 195 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFNGHN--SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS--IEAH----NSEILC 195 (311)
T ss_pred ccCCceEeecCCCCcceEeecCCc--cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE--EEec----cceeEe
Confidence 47999999997 588999999987 78999999994 455 68999999999987 477654 3434 456888
Q ss_pred EEEeC-CceEEEecC-CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCC-CeEEEEEeCCeEEEEecCCcc--
Q 005559 138 CVFWG-NGVVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG-SVEVLIGTDAGILMLDEDGVQ-- 212 (691)
Q Consensus 138 ~~~~~-~G~vllt~~-~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~-~~~vl~s~d~ti~l~d~~~~~-- 212 (691)
|-.+. +--+++|++ .+.+..|++...+.- +.. + ..+..+|-...|||.. ++++.+++|=|+.+|+.....
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p-l~e--L--~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~ 270 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLRTP-LFE--L--NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA 270 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhcccc-cee--e--cCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence 88765 667777766 567777776533211 110 1 1455666666788765 567888899999999977332
Q ss_pred ----cccCCCeeEEEECC-CCCEEEEEeeCCeEEEEecC
Q 005559 213 ----KVDDTLSQKMAVSP-NGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 213 ----~~~~~~i~~Ia~Sp-nG~~IAl~t~dg~i~I~ssd 246 (691)
..|..-+..+-+|+ ++..+|..+-|+.++||+..
T Consensus 271 ~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p~ 309 (311)
T KOG0277|consen 271 IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNPG 309 (311)
T ss_pred hhhhhccceEEeccccccccCceeeecccccceeeeccc
Confidence 34555566777776 44589999999999999743
No 127
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.61 E-value=6.7e-06 Score=92.12 Aligned_cols=166 Identities=17% Similarity=0.243 Sum_probs=105.2
Q ss_pred CCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEe---CCeEEEEeCCC-CeeccccCCCccccccCeEEEE
Q 005559 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ---DGTVYRYNIHA-ELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~---DGtV~ly~~~G-~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
...|.+|+.+|.-...+.-+. +.+.+..||||++ |+.++. +..+.+||+.+ +... +... .......+
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~--~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~~~----~g~~~~~~ 254 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSA--EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--VASF----RGINGAPS 254 (433)
T ss_pred eEEEEEECCCCCCceEeecCC--CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--eccC----CCCccCce
Confidence 457999999998777777555 6799999999998 455553 34688889964 4322 1111 12234567
Q ss_pred EeCCce-EEEec--CC--eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEe-CC--eEEEEecCCc
Q 005559 140 FWGNGV-VCVTE--AN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DA--GILMLDEDGV 211 (691)
Q Consensus 140 ~~~~G~-vllt~--~~--~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~-d~--ti~l~d~~~~ 211 (691)
++++|- ++++. ++ ++|.+ +..+....++... +. ....|.||+||+.+++.+. ++ .||.++.++.
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~-d~~~g~~~~lt~~-----~~--~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVM-DLGSRQLTRLTNH-----FG--IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEE-ECCCCCeEECccC-----CC--CccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 888884 33332 22 35444 5555555555421 11 1224578899998888775 33 4888887654
Q ss_pred c--cc--cCCCeeEEEECCCCCEEEEEeeCC---eEEEEecC
Q 005559 212 Q--KV--DDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (691)
Q Consensus 212 ~--~~--~~~~i~~Ia~SpnG~~IAl~t~dg---~i~I~ssd 246 (691)
. .. ........++||||++||..+.++ .|++++.+
T Consensus 327 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 327 SAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred CeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 3 22 223345789999999999987543 57777654
No 128
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.61 E-value=3.2e-06 Score=84.56 Aligned_cols=243 Identities=13% Similarity=0.167 Sum_probs=151.5
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCc-eeEEEEecCCCCCEEEEEecCC--CeEEEEEeCCeEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-LISETVWKNPGGRLIGMSWSED--QTLICVVQDGTVY 111 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~-ll~si~~~~~~~~Iv~~~fs~d--e~Lv~v~~DGtV~ 111 (691)
...|+..-+|.-+|... .+.++.+|+..+. +.........++.|..+.|.|. ..+++++.|.+|+
T Consensus 23 v~Sv~wn~~g~~lasgs------------~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGS------------FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred ceEEEEcccCceeeecc------------cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 45788888999888764 7899999998754 4444443332267999999984 4568999999999
Q ss_pred EEeC-CCCeeccccCCCccccccCeEEEEEeCCceEEEecCC--eEEEEecCCCceEE-EcCCCCcCCCCceEEEecCCc
Q 005559 112 RYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN--RYFCMADFATMKVC-ELARPEVEELPHCVAVIEPKY 187 (691)
Q Consensus 112 ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~--~~~~v~n~~~~~~~-~l~~~~l~~~~~~w~vi~~~~ 187 (691)
+||. .|+.....-..+ +. +-+.-||+|.-++.++. .+..+..- ..+.. ....+.. ..-.+|.
T Consensus 91 ~wd~r~~k~~~~i~~~~-----en-i~i~wsp~g~~~~~~~kdD~it~id~r-~~~~~~~~~~~~e-~ne~~w~------ 156 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKG-----EN-INITWSPDGEYIAVGNKDDRITFIDAR-TYKIVNEEQFKFE-VNEISWN------ 156 (313)
T ss_pred EEEeccCcEEEEeeccC-----cc-eEEEEcCCCCEEEEecCcccEEEEEec-ccceeehhcccce-eeeeeec------
Confidence 9987 677654222211 12 23345677755555443 34444321 11111 0000000 1133444
Q ss_pred CCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCC
Q 005559 188 TMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPP 262 (691)
Q Consensus 188 S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p 262 (691)
.++.+.++-.-.|+|-+++--+.. ..|...-..|.|+|+|+++|+++.|-.+-+|+. ++.+|+-- .
T Consensus 157 -~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~--~ELiC~R~------i 227 (313)
T KOG1407|consen 157 -NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV--DELICERC------I 227 (313)
T ss_pred -CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccCh--hHhhhhee------e
Confidence 366666655556877776654332 346666778999999999999999988888854 45555421 1
Q ss_pred CeEEEecCceEEEEEcCeEEEEcCCCCceEeecCCCeEEeecCCc-eEEEecCcceeeeccchhhhhhccc
Q 005559 263 EQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAI 332 (691)
Q Consensus 263 ~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~~~~If~i 332 (691)
..|.|= | ..++|+||+..+.....|- |-|=-.+.++-+.+||-. ...|.+
T Consensus 228 sRldwp-----V--------------RTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~-~~t~tV 278 (313)
T KOG1407|consen 228 SRLDWP-----V--------------RTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE-GPTFTV 278 (313)
T ss_pred ccccCc-----e--------------EEEEeccCcceeeccCccceEEeEecccCCeEEEeecc-CCceeE
Confidence 122220 1 1578888988888888887 777777777777777643 344444
No 129
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.59 E-value=1.7e-06 Score=92.29 Aligned_cols=173 Identities=14% Similarity=0.139 Sum_probs=116.0
Q ss_pred cCCCeEEEEcCC---CceeE--------EEEecCCCCCEEEEEecCC--CeEEEEEeCCeEEEEeCCCCee-------cc
Q 005559 63 SALRKLRIFNSA---GVLIS--------ETVWKNPGGRLIGMSWSED--QTLICVVQDGTVYRYNIHAELI-------EP 122 (691)
Q Consensus 63 ~~~~~I~Iys~s---G~ll~--------si~~~~~~~~Iv~~~fs~d--e~Lv~v~~DGtV~ly~~~G~~~-------~~ 122 (691)
+..+.|.||+.. +.... ++.+|+ +.=.++.|++. +.|+..++|++|.+||+++.-. +.
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~--~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~ 221 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE--KEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKT 221 (422)
T ss_pred CCCCCEEEEEeccCCCcccccccCCCceEEEeec--ccccccccccccceeEeeccCCCcEEEEeccccccCCccccceE
Confidence 356778888753 22221 788887 55778899984 7799999999999999974322 12
Q ss_pred ccCCCccccccCeEEEEEeC--CceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCC-CCeEEEEEe
Q 005559 123 NASMGKECFEENVVECVFWG--NGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT-GSVEVLIGT 199 (691)
Q Consensus 123 sl~~~~~~~~~~V~~~~~~~--~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d-~~~~vl~s~ 199 (691)
.+..+ +..|-++++.+ ..++...+++....+|+.... .-+.......+....|++ .|+|- +-.+++++.
T Consensus 222 ~~~~h----~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~---~fnp~~~~ilAT~S~ 293 (422)
T KOG0264|consen 222 IFSGH----EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCV---AFNPFNEFILATGSA 293 (422)
T ss_pred EeecC----CcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEE---EeCCCCCceEEeccC
Confidence 34444 45677888764 555555566666667775421 111111111122344555 45554 456677778
Q ss_pred CCeEEEEecCCcc------cccCCCeeEEEECCCCC-EEEEEeeCCeEEEEec
Q 005559 200 DAGILMLDEDGVQ------KVDDTLSQKMAVSPNGN-FVACFTHDGRLVVNNT 245 (691)
Q Consensus 200 d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~-~IAl~t~dg~i~I~ss 245 (691)
|+||.+||..+.. ..|...|.+|.+||+.. .+|+.+.|+++.||+.
T Consensus 294 D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 294 DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 9999999998654 46888999999999985 6888888999999974
No 130
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.58 E-value=1.9e-05 Score=81.19 Aligned_cols=159 Identities=18% Similarity=0.277 Sum_probs=100.2
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeC
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWG 142 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~ 142 (691)
..+.+-||+- ..+.+.++...+ .|.++.++ -+++|+|.++ ++++|+..-++.+ ..+.+.+-.|
T Consensus 73 ~pNkviIWDD~k~~~i~el~f~~---~I~~V~l~-r~riVvvl~~-~I~VytF~~n~k~-----------l~~~et~~NP 136 (346)
T KOG2111|consen 73 PPNKVIIWDDLKERCIIELSFNS---EIKAVKLR-RDRIVVVLEN-KIYVYTFPDNPKL-----------LHVIETRSNP 136 (346)
T ss_pred CCceEEEEecccCcEEEEEEecc---ceeeEEEc-CCeEEEEecC-eEEEEEcCCChhh-----------eeeeecccCC
Confidence 4788999995 678899999875 79999998 4556666655 5899987644322 1123323334
Q ss_pred CceEEEecCC-e-----------EEEEecCCCceE---EEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeE-EEE
Q 005559 143 NGVVCVTEAN-R-----------YFCMADFATMKV---CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGI-LML 206 (691)
Q Consensus 143 ~G~vllt~~~-~-----------~~~v~n~~~~~~---~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti-~l~ 206 (691)
+|+..+.... . -+++-++..... ..++- -.+...|.++ +.+|..++++|..||+ .+|
T Consensus 137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A--H~s~Iacv~L-----n~~Gt~vATaStkGTLIRIF 209 (346)
T KOG2111|consen 137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA--HDSDIACVAL-----NLQGTLVATASTKGTLIRIF 209 (346)
T ss_pred CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc--ccCceeEEEE-----cCCccEEEEeccCcEEEEEE
Confidence 5543333221 1 222222221111 11110 0022555554 4689999999999985 557
Q ss_pred ecCCcc-------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 207 DEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 207 d~~~~~-------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
|..... ......+..|+||||+.+||..++.||++|.+.
T Consensus 210 dt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 210 DTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred EcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 765332 235567999999999999999999999999864
No 131
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.57 E-value=2.4e-06 Score=91.11 Aligned_cols=169 Identities=12% Similarity=0.145 Sum_probs=117.0
Q ss_pred CCCeEEEEcCCCc--------eeEEEEecCCCCCEEEEEecC-CCeE-EEEEeCCeEEEEeCCC--CeeccccCCCcccc
Q 005559 64 ALRKLRIFNSAGV--------LISETVWKNPGGRLIGMSWSE-DQTL-ICVVQDGTVYRYNIHA--ELIEPNASMGKECF 131 (691)
Q Consensus 64 ~~~~I~Iys~sG~--------ll~si~~~~~~~~Iv~~~fs~-de~L-v~v~~DGtV~ly~~~G--~~~~~sl~~~~~~~ 131 (691)
.+.+|++|+-++. +...+..|. ..|-++.|.+ ++.| .+|++||.+.|||..- +..+.+...+
T Consensus 198 ~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~--~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah---- 271 (422)
T KOG0264|consen 198 DDHTICLWDINAESKEDKVVDPKTIFSGHE--DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH---- 271 (422)
T ss_pred CCCcEEEEeccccccCCccccceEEeecCC--cceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc----
Confidence 4666677765432 234455666 7899999988 4555 6899999999998863 1222233334
Q ss_pred ccCeEEEEEeC-CceEEEecC-CeEEEEecCCCc--eEEEcCCCCcCCCCceEEEecCCcCCCCCeEE-EEEeCCeEEEE
Q 005559 132 EENVVECVFWG-NGVVCVTEA-NRYFCMADFATM--KVCELARPEVEELPHCVAVIEPKYTMTGSVEV-LIGTDAGILML 206 (691)
Q Consensus 132 ~~~V~~~~~~~-~G~vllt~~-~~~~~v~n~~~~--~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~v-l~s~d~ti~l~ 206 (691)
..+|..++|.+ ++.+++|++ ...+.+|++.+. .+..+.. +.+....| +|||+..+++ ..+.|+.+.+|
T Consensus 272 ~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~----H~dev~~V---~WSPh~etvLASSg~D~rl~vW 344 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG----HEDEVFQV---EWSPHNETVLASSGTDRRLNVW 344 (422)
T ss_pred CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC----CCcceEEE---EeCCCCCceeEecccCCcEEEE
Confidence 57799999988 889999988 567777775422 1222221 22444455 8999887654 44559999999
Q ss_pred ecCCcc-------------------cccCCCeeEEEECCCCC-EEEEEeeCCeEEEEec
Q 005559 207 DEDGVQ-------------------KVDDTLSQKMAVSPNGN-FVACFTHDGRLVVNNT 245 (691)
Q Consensus 207 d~~~~~-------------------~~~~~~i~~Ia~SpnG~-~IAl~t~dg~i~I~ss 245 (691)
|.+..- .+|...|..+++.|+-. .||+.++|+.++||.-
T Consensus 345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 988221 24666788999999985 5899999999999964
No 132
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.55 E-value=5.8e-06 Score=91.70 Aligned_cols=187 Identities=19% Similarity=0.229 Sum_probs=112.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEE-EEeCC--eEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LIC-VVQDG--TVY 111 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~-v~~DG--tV~ 111 (691)
...++||+|..||..... ...+.|.+|+..+.....+.-.. +.+..+.|+||++ +++ ...+| .++
T Consensus 193 ~~p~~Spdg~~la~~~~~---------~~~~~i~v~d~~~g~~~~~~~~~--~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFE---------SGKPEIYVQDLATGQREKVASFP--GMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred ecccCCCCCCEEEEEEcC---------CCCcEEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEECCCCCccEE
Confidence 346789999999987632 13478999998654444444333 5677899999987 443 34444 477
Q ss_pred EEeCCCCeeccccCCCccccccCeEEEEEeCCceEEE-ecC----CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCC
Q 005559 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCV-TEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (691)
Q Consensus 112 ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vll-t~~----~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~ 186 (691)
+|++.+...+ .+..+ ........++++|.-++ +++ .++|.+ +..+....++.. .... ...|.
T Consensus 262 ~~d~~~~~~~-~l~~~----~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~-d~~~~~~~~l~~----~~~~---~~~~~ 328 (417)
T TIGR02800 262 VMDLDGKQLT-RLTNG----PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMM-DADGGEVRRLTF----RGGY---NASPS 328 (417)
T ss_pred EEECCCCCEE-ECCCC----CCCCCCEEECCCCCEEEEEECCCCCceEEEE-ECCCCCEEEeec----CCCC---ccCeE
Confidence 7788654332 22222 11233456778885443 332 145554 444444444432 1111 12335
Q ss_pred cCCCCCeEEEEEeCC---eEEEEecCCcc--cc-cCCCeeEEEECCCCCEEEEEeeCC---eEEEEecC
Q 005559 187 YTMTGSVEVLIGTDA---GILMLDEDGVQ--KV-DDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (691)
Q Consensus 187 ~S~d~~~~vl~s~d~---ti~l~d~~~~~--~~-~~~~i~~Ia~SpnG~~IAl~t~dg---~i~I~ssd 246 (691)
+|++|..+++.+.++ .|++++.++.. .. ........++||||++|++.+.++ .+++.+.+
T Consensus 329 ~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 329 WSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred ECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 788999988888776 79999987543 11 122344568999999999887753 45566555
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=4.7e-06 Score=85.19 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=134.9
Q ss_pred cCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCC-CeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEe
Q 005559 63 SALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSED-QTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 63 ~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~d-e~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~ 141 (691)
..++.|+.|+.++..-..+--|. +.|.+|.+++. +.+|+++-|++|++||+.++....++..+ ..|....+.
T Consensus 72 ~~dg~vr~~Dln~~~~~~igth~--~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-----kkVy~~~v~ 144 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNEDQIGTHD--EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-----KKVYCMDVS 144 (323)
T ss_pred ccCceEEEEEecCCcceeeccCC--CceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-----ceEEEEecc
Confidence 37999999999888888888777 78999999984 66889999999999999875544344332 468887778
Q ss_pred CCceEEEecCCe--EEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-------
Q 005559 142 GNGVVCVTEANR--YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------- 212 (691)
Q Consensus 142 ~~G~vllt~~~~--~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~------- 212 (691)
++-+++.+.+.+ +|-+.+.+.+. +.....++-...|.+.+ |++.=.+..+.||.|.+=..+...
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~-----pn~eGy~~sSieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALV-----PNGEGYVVSSIEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEe-----cCCCceEEEeecceEEEEccCCchHHhhhce
Confidence 888888787765 34444444332 11111121225666665 367777888899988774333221
Q ss_pred -----------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecC
Q 005559 213 -----------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM 270 (691)
Q Consensus 213 -----------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~ 270 (691)
....-||..|+|+|-.+.+|+++.||.+-+|+-.-.+.|.+|..- +...-.+++|-+
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~d 285 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMD 285 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccC
Confidence 122358999999999999999999999999987767777777533 223445555533
No 134
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.52 E-value=8.1e-06 Score=92.71 Aligned_cols=213 Identities=14% Similarity=0.146 Sum_probs=146.4
Q ss_pred CCCeEEEEcCCCceeEEEEecC-----CCCCEEEEEecCCCeEE-EEEeCCeEEEEeCCCCeeccccC---CCccccccC
Q 005559 64 ALRKLRIFNSAGVLISETVWKN-----PGGRLIGMSWSEDQTLI-CVVQDGTVYRYNIHAELIEPNAS---MGKECFEEN 134 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~-----~~~~Iv~~~fs~de~Lv-~v~~DGtV~ly~~~G~~~~~sl~---~~~~~~~~~ 134 (691)
.+..+..|+..-+.++....+. ....+.+++-|+.|..+ ++++.|+|-+||++.-+.+.+|+ .+ ...
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah----~~~ 495 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH----KGE 495 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc----cCc
Confidence 4666778887666665544433 12479999999999985 78999999999998777776885 33 567
Q ss_pred eEEEEEeCCceEEEecC-CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-
Q 005559 135 VVECVFWGNGVVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ- 212 (691)
Q Consensus 135 V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~- 212 (691)
|..+..=+.+..+++.+ ..+..+|++.+..+ +....++..+.+.. +.-.....+++..+-.|.++|.-...
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l--~~~l~l~~~~~~iv-----~hr~s~l~a~~~ddf~I~vvD~~t~kv 568 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVL--KKSLRLGSSITGIV-----YHRVSDLLAIALDDFSIRVVDVVTRKV 568 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcce--eeeeccCCCcceee-----eeehhhhhhhhcCceeEEEEEchhhhh
Confidence 99988877776555544 55788888865431 12111212222221 22344555666667778888876443
Q ss_pred ----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCC
Q 005559 213 ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQA 288 (691)
Q Consensus 213 ----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~ 288 (691)
..|.+.++.++|||+|+.|++++.|++|++|+--.+..+ |.+ ++....
T Consensus 569 vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI-------------------D~~---------~vd~~~ 620 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI-------------------DGL---------LVDSPC 620 (910)
T ss_pred hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee-------------------eeE---------ecCCcc
Confidence 468999999999999999999999999999965423222 111 111112
Q ss_pred CceEeecCCCeEEeecCC--ceEEEecCc
Q 005559 289 EPVQYFYDEPLVLIPECD--GVRILSNSS 315 (691)
Q Consensus 289 ~~v~f~~d~~~~l~~E~D--GvRIit~~~ 315 (691)
.+++|+++++..+..-+| ||-+|++..
T Consensus 621 ~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 621 TSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 368899999999999998 699999884
No 135
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=1.2e-05 Score=89.92 Aligned_cols=166 Identities=16% Similarity=0.207 Sum_probs=102.9
Q ss_pred CCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeE-EEEEe-C--CeEEEEeCC-CCeeccccCCCccccccCeEEEE
Q 005559 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQ-D--GTVYRYNIH-AELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~-D--GtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
...|.+++.+|.....+..+. +.+.+..||||++. +.++. + ..+.+||+. |+....+ .. ...+....
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~--~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~--~~----~g~~~~~~ 246 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSP--EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA--NF----KGSNSAPA 246 (427)
T ss_pred ccEEEEECCCCCCceEeccCC--CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee--cC----CCCccceE
Confidence 467999999998877776555 67999999999985 44443 2 358888986 4443311 11 12345667
Q ss_pred EeCCceEE-EecC--C--eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeC-C--eEEEEecCCc
Q 005559 140 FWGNGVVC-VTEA--N--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD-A--GILMLDEDGV 211 (691)
Q Consensus 140 ~~~~G~vl-lt~~--~--~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d-~--ti~l~d~~~~ 211 (691)
++++|-.+ ++.+ + ++|.++ ..+....++... .. ....|.|||||+.+++.+.. + .||.++.++.
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d-~~~~~~~~lt~~-----~~--~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g 318 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVN-ADGSGLRRLTQS-----SG--IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG 318 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEE-CCCCCcEECCCC-----CC--CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC
Confidence 88888543 3322 2 466553 333444555431 11 12345688999988887652 2 5777776543
Q ss_pred c--cc--cCCCeeEEEECCCCCEEEEEeeCC---eEEEEecC
Q 005559 212 Q--KV--DDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (691)
Q Consensus 212 ~--~~--~~~~i~~Ia~SpnG~~IAl~t~dg---~i~I~ssd 246 (691)
. .. ..+.....++||||++||..+.++ .|++++.+
T Consensus 319 ~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 319 AAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred ceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence 3 21 223344689999999999887654 57777643
No 136
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=8.2e-06 Score=91.79 Aligned_cols=206 Identities=17% Similarity=0.165 Sum_probs=118.6
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EE-EEEeCCe--EEE
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDGT--VYR 112 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv-~v~~DGt--V~l 112 (691)
..+.||+|..||..+++. ..+.|.+++..|.....+.... +......||||++ |+ +...+|. +.+
T Consensus 222 ~p~wSPDG~~La~~s~~~---------g~~~L~~~dl~tg~~~~lt~~~--g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFEN---------RKAEIFVQDIYTQVREKVTSFP--GINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred CceECCCCCEEEEEEecC---------CCcEEEEEECCCCCeEEecCCC--CCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 568999999999987431 3567999998655444444222 4455789999998 54 3566776 555
Q ss_pred EeCCCCeeccccCCCccccccCeEEEEEeCCceEE-EecC----CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCc
Q 005559 113 YNIHAELIEPNASMGKECFEENVVECVFWGNGVVC-VTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKY 187 (691)
Q Consensus 113 y~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vl-lt~~----~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~ 187 (691)
+|+.+...+ .+..+ ...+....++++|-.+ .+++ .++|.+ +.++....++... ..+ ...|.+
T Consensus 291 ~dl~tg~~~-~lt~~----~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~-dl~~g~~~~Lt~~------g~~-~~~~~~ 357 (448)
T PRK04792 291 VDIATKALT-RITRH----RAIDTEPSWHPDGKSLIFTSERGGKPQIYRV-NLASGKVSRLTFE------GEQ-NLGGSI 357 (448)
T ss_pred EECCCCCeE-ECccC----CCCccceEECCCCCEEEEEECCCCCceEEEE-ECCCCCEEEEecC------CCC-CcCeeE
Confidence 577644332 22222 1224566777888544 3332 235554 4444444444310 111 123468
Q ss_pred CCCCCeEEEEEeCC---eEEEEecCCcc--cccCC-CeeEEEECCCCCEEEEEeeC-C--eEEEEecCCCCceeeccCCC
Q 005559 188 TMTGSVEVLIGTDA---GILMLDEDGVQ--KVDDT-LSQKMAVSPNGNFVACFTHD-G--RLVVNNTNFSSPVIDESCES 258 (691)
Q Consensus 188 S~d~~~~vl~s~d~---ti~l~d~~~~~--~~~~~-~i~~Ia~SpnG~~IAl~t~d-g--~i~I~ssd~~~~l~e~d~~~ 258 (691)
||||..+++.+.++ .|++++.++.. .+..+ .-...++||||+.|++.+.+ | .+++++.+ ++........
T Consensus 358 SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~- 435 (448)
T PRK04792 358 TPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAG- 435 (448)
T ss_pred CCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCC-
Confidence 89999988887643 57778876543 22222 12245899999999987754 3 46777665 3333333321
Q ss_pred CCCCCeEEEe
Q 005559 259 ALPPEQIAWC 268 (691)
Q Consensus 259 ~~~p~q~~WC 268 (691)
........|.
T Consensus 436 ~g~~~~p~Ws 445 (448)
T PRK04792 436 QGEVKSPAWS 445 (448)
T ss_pred CCCcCCCccC
Confidence 2233455554
No 137
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.52 E-value=1.9e-06 Score=96.00 Aligned_cols=202 Identities=16% Similarity=0.148 Sum_probs=131.4
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC-ceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCe
Q 005559 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGT 109 (691)
Q Consensus 32 ~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGt 109 (691)
.++.+.++++|.|..||.+-..+. ...-.|++|+..- ..+..+..|+ =.|..|.|||||+ |+.|+.|.|
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~-------~ehAvI~lw~t~~W~~~~~L~~Hs--LTVT~l~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSL-------KEHAVIRLWNTANWLQVQELEGHS--LTVTRLAFSPDGRYLLSVSRDRT 595 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCC-------ccceEEEEEeccchhhhheecccc--eEEEEEEECCCCcEEEEeecCce
Confidence 467789999999999999853211 2467899999654 4555699998 4799999999999 579999999
Q ss_pred EEEEeCCCC-eeccc---cCCCccccccCeEEEEEeCCceEEEecCC-eEEEEecCCCceEEEcCC---CCcCCCCceEE
Q 005559 110 VYRYNIHAE-LIEPN---ASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELAR---PEVEELPHCVA 181 (691)
Q Consensus 110 V~ly~~~G~-~~~~s---l~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~~~~~~l~~---~~l~~~~~~w~ 181 (691)
+.+|+.+-. ...+. ...| ..=|++|...|++.-++|++. +.+.||...+.+...+++ +......+.-+
T Consensus 596 ~sl~~~~~~~~~e~~fa~~k~H----tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~ 671 (764)
T KOG1063|consen 596 VSLYEVQEDIKDEFRFACLKAH----TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA 671 (764)
T ss_pred EEeeeeecccchhhhhcccccc----ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence 999976322 11222 2223 223789998899988999885 477777765443333332 11111123333
Q ss_pred EecCCcCCCCCeEEEEEeCCeEEEEecC--Ccc---------------cccCCCeeEEEECCC----------CCEEEEE
Q 005559 182 VIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ---------------KVDDTLSQKMAVSPN----------GNFVACF 234 (691)
Q Consensus 182 vi~~~~S~d~~~~vl~s~d~ti~l~d~~--~~~---------------~~~~~~i~~Ia~Spn----------G~~IAl~ 234 (691)
+.+......+..++..-..|.|++|... ..+ ..+.+.|.++.++|. +.++|++
T Consensus 672 ~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~ 751 (764)
T KOG1063|consen 672 YLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVG 751 (764)
T ss_pred eeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeee
Confidence 3332222233344444457889998844 110 234456888999976 2367888
Q ss_pred eeCCeEEEEecC
Q 005559 235 THDGRLVVNNTN 246 (691)
Q Consensus 235 t~dg~i~I~ssd 246 (691)
++|..++|.+-+
T Consensus 752 g~D~~vri~nv~ 763 (764)
T KOG1063|consen 752 GDDESVRIFNVD 763 (764)
T ss_pred cccceeEEeecc
Confidence 888888877644
No 138
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.52 E-value=4.7e-06 Score=87.15 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=127.8
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEc--------------------------CCCceeEEEEecCCCC
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN--------------------------SAGVLISETVWKNPGG 88 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys--------------------------~sG~ll~si~~~~~~~ 88 (691)
...|++.++|..++..+ .|++|+||+ ..+.++.++.+|. +
T Consensus 196 V~sVsv~~sgtr~~SgS------------~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt--~ 261 (423)
T KOG0313|consen 196 VDSVSVDSSGTRFCSGS------------WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT--E 261 (423)
T ss_pred eeEEEecCCCCeEEeec------------ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc--c
Confidence 34778888888887774 899999999 2346888999998 8
Q ss_pred CEEEEEecCCCeEEEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCc--e
Q 005559 89 RLIGMSWSEDQTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATM--K 164 (691)
Q Consensus 89 ~Iv~~~fs~de~Lv~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~--~ 164 (691)
.|-++-|++.+.+.+++.|-||+.||+. |.... ++... ..+.++...+.--.+++++ .+...+++-..+ .
T Consensus 262 ~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~-~~~~~-----ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 262 PVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKS-TLTTN-----KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred ceeeEEEcCCCceEeecccceEEEEEeeccccee-eeecC-----cceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence 9999999999999999999999999994 54433 33222 2356666667554555544 556666663211 1
Q ss_pred EEEcCCCCcCCCCceEEEecCCcCCCC-CeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEeeC
Q 005559 165 VCELARPEVEELPHCVAVIEPKYTMTG-SVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHD 237 (691)
Q Consensus 165 ~~~l~~~~l~~~~~~w~vi~~~~S~d~-~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~d 237 (691)
..... +.++.. | |-...++|.. ...+..++|+++++||...+. ..|...|..+.++- |..|++++.|
T Consensus 336 ~v~~s---~~gH~n-w-Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD 409 (423)
T KOG0313|consen 336 VVSQS---LIGHKN-W-VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGAD 409 (423)
T ss_pred eeEEe---eecchh-h-hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCc
Confidence 11111 101211 3 1111455544 466888899999999998665 35777888888874 4599999999
Q ss_pred CeEEEEecC
Q 005559 238 GRLVVNNTN 246 (691)
Q Consensus 238 g~i~I~ssd 246 (691)
.+|+|..++
T Consensus 410 ~~l~i~~~~ 418 (423)
T KOG0313|consen 410 NKLRIFKGS 418 (423)
T ss_pred ceEEEeccc
Confidence 999998653
No 139
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=8.4e-06 Score=90.31 Aligned_cols=225 Identities=11% Similarity=0.082 Sum_probs=148.6
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEe-cCCCCCEEEEEecCCCeEEEEEeCCeEE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVW-KNPGGRLIGMSWSEDQTLICVVQDGTVY 111 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~-~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ 111 (691)
....|+.+++|+.||+.. .+++|.||+. .-+.+.++.. |. ++|-+++|. +..+.+++.||.+.
T Consensus 219 ~vtSv~ws~~G~~LavG~------------~~g~v~iwD~~~~k~~~~~~~~h~--~rvg~laW~-~~~lssGsr~~~I~ 283 (484)
T KOG0305|consen 219 LVTSVKWSPDGSHLAVGT------------SDGTVQIWDVKEQKKTRTLRGSHA--SRVGSLAWN-SSVLSSGSRDGKIL 283 (484)
T ss_pred ceEEEEECCCCCEEEEee------------cCCeEEEEehhhccccccccCCcC--ceeEEEecc-CceEEEecCCCcEE
Confidence 456889999999999986 6899999996 6778888988 66 899999999 56678999999999
Q ss_pred EEeCCC-C-eeccccCCCccccccCeEEEEEeCCceEEEecCC-eEEEEecCCCce-EEEcCCCCcCCCCceEEEecCCc
Q 005559 112 RYNIHA-E-LIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMK-VCELARPEVEELPHCVAVIEPKY 187 (691)
Q Consensus 112 ly~~~G-~-~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~~~-~~~l~~~~l~~~~~~w~vi~~~~ 187 (691)
.+|+.- + ... .+.+| ..+|...+..++|..++++.+ +...||+...+. +..+.+ +.=+|---.|
T Consensus 284 ~~dvR~~~~~~~-~~~~H----~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~-------H~aAVKA~aw 351 (484)
T KOG0305|consen 284 NHDVRISQHVVS-TLQGH----RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE-------HTAAVKALAW 351 (484)
T ss_pred EEEEecchhhhh-hhhcc----cceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec-------cceeeeEeee
Confidence 998852 2 233 35555 466888888899999999774 577788864332 122221 1111111134
Q ss_pred CCCC-CeEEEEE--eCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEe--eCCeEEEEecCCCCceeeccCCC
Q 005559 188 TMTG-SVEVLIG--TDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFT--HDGRLVVNNTNFSSPVIDESCES 258 (691)
Q Consensus 188 S~d~-~~~vl~s--~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t--~dg~i~I~ssd~~~~l~e~d~~~ 258 (691)
+|-. +++++.+ .|++|+.|+..... ....+.|..|.+||.++-|++.. .++.|.||+----+...++..|
T Consensus 352 cP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH- 430 (484)
T KOG0305|consen 352 CPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH- 430 (484)
T ss_pred CCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC-
Confidence 4433 3333333 27799999988544 34667899999999997666643 3466666643212223344344
Q ss_pred CCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEee
Q 005559 259 ALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYF 294 (691)
Q Consensus 259 ~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~ 294 (691)
..+...++|.-+ .+-.++|...+.++||
T Consensus 431 ~~RVl~la~SPd--------g~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 431 TSRVLYLALSPD--------GETIVTGAADETLRFW 458 (484)
T ss_pred cceeEEEEECCC--------CCEEEEecccCcEEec
Confidence 234445555432 2344556666778886
No 140
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.49 E-value=1.6e-06 Score=95.87 Aligned_cols=185 Identities=14% Similarity=0.144 Sum_probs=133.3
Q ss_pred CCCeEEEEcC---CCc---e-eEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCC--eeccccCCCcccccc
Q 005559 64 ALRKLRIFNS---AGV---L-ISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAE--LIEPNASMGKECFEE 133 (691)
Q Consensus 64 ~~~~I~Iys~---sG~---l-l~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~--~~~~sl~~~~~~~~~ 133 (691)
.|+.|++|+. +++ . +.++.-|. +++-++.-..+++ ||+++.|-||++|+.+-. +-..+++.| .+
T Consensus 45 RDg~i~~W~~~~d~~~~s~~~~asme~Hs--DWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H----~D 118 (735)
T KOG0308|consen 45 RDGIIRLWSVTQDSNEPSTPYIASMEHHS--DWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTH----KD 118 (735)
T ss_pred CCceEEEeccccccCCcccchhhhhhhhH--hHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcc----cc
Confidence 6899999985 342 2 77888888 8899998888885 899999999999988522 322367766 45
Q ss_pred CeEEEEE-eCCceEEEecC-CeEEEEecCCCc---eEEEcCCC---CcC-CC-CceEEEecCCcCCCCCeEEEEEeCCeE
Q 005559 134 NVVECVF-WGNGVVCVTEA-NRYFCMADFATM---KVCELARP---EVE-EL-PHCVAVIEPKYTMTGSVEVLIGTDAGI 203 (691)
Q Consensus 134 ~V~~~~~-~~~G~vllt~~-~~~~~v~n~~~~---~~~~l~~~---~l~-~~-~~~w~vi~~~~S~d~~~~vl~s~d~ti 203 (691)
-|..... ..+-..+++++ ++-+.+|+++.. .+-.+.+. .+. +. .+..+. .-.++|..+|..+.++.+
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL---A~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL---AMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee---ecCCcceEEEecCcccce
Confidence 6766666 66777777776 566677787633 11111111 121 11 233443 223566677888889999
Q ss_pred EEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCC
Q 005559 204 LMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCE 257 (691)
Q Consensus 204 ~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~ 257 (691)
.+||...+. ..|...|..+.++++|..+.+++.||+|++|+-.-++++..|-.+
T Consensus 196 r~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH 254 (735)
T KOG0308|consen 196 RLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH 254 (735)
T ss_pred EEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence 999998765 578899999999999999999999999999988766777666544
No 141
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.48 E-value=6.9e-06 Score=93.54 Aligned_cols=228 Identities=12% Similarity=0.099 Sum_probs=158.1
Q ss_pred CCEEEEEecCCCeEEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceE
Q 005559 88 GRLIGMSWSEDQTLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKV 165 (691)
Q Consensus 88 ~~Iv~~~fs~de~Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~ 165 (691)
..+++..|. ++.++..+.|+++++|+. .|......+.+| .++|+.+.+-..|-.+++++ .....||+......
T Consensus 209 ~~~~~~q~~-~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH----~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 209 HVVLCLQLH-DGFFKSGSDDSTLHLWDLNNGYLILTRLVGH----FGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred chhhhheee-cCeEEecCCCceeEEeecccceEEEeeccCC----CCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 468888888 889999999999999977 577777447777 68899999876566666666 56777888764433
Q ss_pred E-EcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCe
Q 005559 166 C-ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGR 239 (691)
Q Consensus 166 ~-~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~ 239 (691)
. .+.. .++...|... .+-..+..+.|.||++|+.++.. ..|.++|..|..+ +.++.+++.||+
T Consensus 284 ~~~l~g--h~stv~~~~~-------~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 284 THSLQG--HTSSVRCLTI-------DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT 352 (537)
T ss_pred EEEecC--CCceEEEEEc-------cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce
Confidence 3 2321 0011233332 34445556789999999999444 3488999999998 679999999999
Q ss_pred EEEEecCCCCceeeccCCCCCCCCeEEEe--------cCceEEEEEcCeE------EEEcCCCCceEeecCCCeEEeecC
Q 005559 240 LVVNNTNFSSPVIDESCESALPPEQIAWC--------GMDSVLLYWNDML------VMVAPQAEPVQYFYDEPLVLIPEC 305 (691)
Q Consensus 240 i~I~ssd~~~~l~e~d~~~~~~p~q~~WC--------G~davvl~~~~~l------~liGp~~~~v~f~~d~~~~l~~E~ 305 (691)
|.||.....+.+..+..|. ...+.+.-- +-|..+..|+-.. .+-||.+-.-.....+..++..+.
T Consensus 353 v~VW~~~~~~cl~sl~gH~-~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~a 431 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHT-GRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSA 431 (537)
T ss_pred EEEEEhhhceeeeeecCCc-ceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccc
Confidence 9999887666666665542 233333222 3456677776422 344554433333345678889999
Q ss_pred Cc-eEEEecCcceeeeccch-hhhhhccc
Q 005559 306 DG-VRILSNSSMEFLQRVPA-STEQIFAI 332 (691)
Q Consensus 306 DG-vRIit~~~~efL~~Vp~-~~~~If~i 332 (691)
|| ||+|..+..+-++.+.. +...|+-.
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l 460 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSAL 460 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEe
Confidence 99 99999999999999888 44444433
No 142
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.47 E-value=2.3e-06 Score=92.65 Aligned_cols=158 Identities=13% Similarity=0.150 Sum_probs=110.2
Q ss_pred cCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEe
Q 005559 63 SALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 63 ~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~ 141 (691)
+.|+.+.|-+.+|+.=.++.-|. +.|.+-.|+|||- |+++++||.|++|+..|-+.. ++-.. +..|..++.-
T Consensus 82 s~DGkf~il~k~~rVE~sv~AH~--~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRS-tl~Q~----~~~v~c~~W~ 154 (737)
T KOG1524|consen 82 SNDGRFVILNKSARVERSISAHA--AAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRS-TVVQN----EESIRCARWA 154 (737)
T ss_pred cCCceEEEecccchhhhhhhhhh--hhhhhcccCCCCceeeeecCCceEEEEeccchHHH-HHhhc----CceeEEEEEC
Confidence 47899999999999999999998 8999999999998 899999999999999996644 33222 3457766643
Q ss_pred C-CceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cccC
Q 005559 142 G-NGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDD 216 (691)
Q Consensus 142 ~-~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~ 216 (691)
| ..-++.+..++++.=.--...++.+..- ++.. |+.-++++....++..+.|-..++||..|.. ..+.
T Consensus 155 p~S~~vl~c~g~h~~IKpL~~n~k~i~WkA----HDGi---iL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~e 227 (737)
T KOG1524|consen 155 PNSNSIVFCQGGHISIKPLAANSKIIRWRA----HDGL---VLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEE 227 (737)
T ss_pred CCCCceEEecCCeEEEeecccccceeEEec----cCcE---EEEeecCccccceeecCCceeEEeecccCcccccCChhc
Confidence 4 4466666667765421111112222211 1122 3334788888899999999999999999876 4566
Q ss_pred CCeeEEEECCCCCEEEEEe
Q 005559 217 TLSQKMAVSPNGNFVACFT 235 (691)
Q Consensus 217 ~~i~~Ia~SpnG~~IAl~t 235 (691)
-||++|+|.|+ +.-|+.+
T Consensus 228 y~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 228 YAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred cceeeeeeccc-cceeeee
Confidence 67777777777 4445444
No 143
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.47 E-value=9.9e-06 Score=80.61 Aligned_cols=153 Identities=13% Similarity=0.204 Sum_probs=95.0
Q ss_pred CEEEEEecCCCeEEEEEeC-----------CeEEEEeC--CCCeeccccCCCccccccCeEEEEEeCCce--EEEecC-C
Q 005559 89 RLIGMSWSEDQTLICVVQD-----------GTVYRYNI--HAELIEPNASMGKECFEENVVECVFWGNGV--VCVTEA-N 152 (691)
Q Consensus 89 ~Iv~~~fs~de~Lv~v~~D-----------GtV~ly~~--~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~--vllt~~-~ 152 (691)
.=+.|.|+++|+-+++..+ |...+|-+ .+.... .+... .++.|.++..+|+|- +++++. .
T Consensus 7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~-~i~l~---~~~~I~~~~WsP~g~~favi~g~~~ 82 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE-SIELK---KEGPIHDVAWSPNGNEFAVIYGSMP 82 (194)
T ss_pred ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc-eeecc---CCCceEEEEECcCCCEEEEEEccCC
Confidence 4567889998874332222 22334422 222222 22221 134599999888874 455443 3
Q ss_pred eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeC---CeEEEEecCCcc---cccCCCeeEEEECC
Q 005559 153 RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDGVQ---KVDDTLSQKMAVSP 226 (691)
Q Consensus 153 ~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d---~ti~l~d~~~~~---~~~~~~i~~Ia~Sp 226 (691)
..+.+++........+.. . ..-.| .|||+|+.+++++.+ |.+.+||.+... .......+.+++||
T Consensus 83 ~~v~lyd~~~~~i~~~~~-----~-~~n~i---~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsP 153 (194)
T PF08662_consen 83 AKVTLYDVKGKKIFSFGT-----Q-PRNTI---SWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSP 153 (194)
T ss_pred cccEEEcCcccEeEeecC-----C-CceEE---EECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcC
Confidence 456667766555555542 1 11233 588999999999864 569999998655 33344578999999
Q ss_pred CCCEEEEEee------CCeEEEEecCCCCceeecc
Q 005559 227 NGNFVACFTH------DGRLVVNNTNFSSPVIDES 255 (691)
Q Consensus 227 nG~~IAl~t~------dg~i~I~ssd~~~~l~e~d 255 (691)
||+++|+++. |+.++||+-. ++.+.+.+
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999999875 5677888765 66665543
No 144
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.46 E-value=7.2e-06 Score=83.83 Aligned_cols=194 Identities=21% Similarity=0.234 Sum_probs=128.9
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEE-EEEeCCeEEEEe----CC-----------CCe-ecccc
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDGTVYRYN----IH-----------AEL-IEPNA 124 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv-~v~~DGtV~ly~----~~-----------G~~-~~~sl 124 (691)
+.|.+.+||+. +|.-+.+-.+|. |.|.++.|.+.|.|+ +++.|++..||. +. ||- ...+-
T Consensus 167 SADhTA~iWs~Esg~CL~~Y~GH~--GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD 244 (481)
T KOG0300|consen 167 SADHTARIWSLESGACLATYTGHT--GSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD 244 (481)
T ss_pred ccccceeEEeeccccceeeecccc--cceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc
Confidence 47999999996 899999999999 999999999999974 899999999995 21 110 00000
Q ss_pred -----CCCcccc--------------ccCeEEEEEe-CCceEEEecC-CeEEEEecCCCceEE-EcCCCCcCCCCceEEE
Q 005559 125 -----SMGKECF--------------EENVVECVFW-GNGVVCVTEA-NRYFCMADFATMKVC-ELARPEVEELPHCVAV 182 (691)
Q Consensus 125 -----~~~~~~~--------------~~~V~~~~~~-~~G~vllt~~-~~~~~v~n~~~~~~~-~l~~~~l~~~~~~w~v 182 (691)
..+.+.. ...|+.|.=| ..|.-++|++ .+.-.+|+++...+. .|..... +..+|-+
T Consensus 245 e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~-ELtHcst- 322 (481)
T KOG0300|consen 245 EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS-ELTHCST- 322 (481)
T ss_pred ccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcch-hcccccc-
Confidence 0000000 1112222234 4677777877 456677787754333 3332110 1133321
Q ss_pred ecCCcCCCCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEec-CCCCceeecc
Q 005559 183 IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT-NFSSPVIDES 255 (691)
Q Consensus 183 i~~~~S~d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss-d~~~~l~e~d 255 (691)
.|+..+.++.+.|.|..+||..+.. ..|...|+.+.|.-+. .+.++++|.+++||.- ++...+...-
T Consensus 323 -----HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR 396 (481)
T KOG0300|consen 323 -----HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR 396 (481)
T ss_pred -----CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee
Confidence 1566778888889999999988554 5688889999999886 6889999999999974 5566666555
Q ss_pred CCCCCCCCeEEEe
Q 005559 256 CESALPPEQIAWC 268 (691)
Q Consensus 256 ~~~~~~p~q~~WC 268 (691)
+++ +..-++=|
T Consensus 397 tdS--~~NRvavs 407 (481)
T KOG0300|consen 397 TDS--PANRVAVS 407 (481)
T ss_pred cCC--ccceeEee
Confidence 543 44455555
No 145
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=1.9e-05 Score=88.27 Aligned_cols=187 Identities=16% Similarity=0.182 Sum_probs=112.6
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeE-E-EEEeCCe--EE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-I-CVVQDGT--VY 111 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~L-v-~v~~DGt--V~ 111 (691)
...+.||+|..||..+.+. ..+.|.+|+..+.....+.... +.+....|||||+. + +...+|. +.
T Consensus 202 ~~p~wSpDG~~la~~s~~~---------~~~~l~~~~l~~g~~~~l~~~~--g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQ---------KRPRIFVQNLDTGRREQITNFE--GLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eeeeECCCCCEEEEEEcCC---------CCCEEEEEECCCCCEEEccCCC--CCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3558899999999887431 3578999998765555554333 55667899999874 3 3455664 66
Q ss_pred EEeCCCCeeccccCCCccccccCeEEEEEeCCceE-EEecC----CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCC
Q 005559 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGVV-CVTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (691)
Q Consensus 112 ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~v-llt~~----~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~ 186 (691)
+||+.+...+ .+..+ ........++++|-- +.+++ .++|.+ +..+....++... .... ..|.
T Consensus 271 ~~d~~~~~~~-~lt~~----~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~-d~~~g~~~~lt~~----~~~~---~~~~ 337 (430)
T PRK00178 271 VMDLASRQLS-RVTNH----PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKV-NVNGGRAERVTFV----GNYN---ARPR 337 (430)
T ss_pred EEECCCCCeE-EcccC----CCCcCCeEECCCCCEEEEEECCCCCceEEEE-ECCCCCEEEeecC----CCCc---cceE
Confidence 6688654333 22222 122345567777743 33332 245554 4444444444311 1111 1346
Q ss_pred cCCCCCeEEEEEeCC---eEEEEecCCcc--cccC-CCeeEEEECCCCCEEEEEeeC---CeEEEEecC
Q 005559 187 YTMTGSVEVLIGTDA---GILMLDEDGVQ--KVDD-TLSQKMAVSPNGNFVACFTHD---GRLVVNNTN 246 (691)
Q Consensus 187 ~S~d~~~~vl~s~d~---ti~l~d~~~~~--~~~~-~~i~~Ia~SpnG~~IAl~t~d---g~i~I~ssd 246 (691)
+||||..+++.+.++ .|++++..+.. .+.. +.-...++||||+.|+..+.+ +.|++++.+
T Consensus 338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred ECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 789999988887643 58888877543 2221 222356899999999998764 356666655
No 146
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.45 E-value=6.8e-06 Score=83.91 Aligned_cols=190 Identities=14% Similarity=0.160 Sum_probs=132.4
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCc--eeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV--LISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYR 112 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~--ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~l 112 (691)
..+++-|.|..+++.. ..|++++|+-+-. .++..+-++..+.|.++.+|+.+.| ++++.||.|++
T Consensus 220 rsiSfHPsGefllvgT------------dHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~Ikl 287 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGT------------DHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKL 287 (430)
T ss_pred eeEeecCCCceEEEec------------CCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEe
Confidence 4678899999998875 5799999996432 3444444443378999999999998 68999999999
Q ss_pred EeC-CCCeeccccCCCccccccCeEEEEEeCCceEEEecCC-eEEEEecCCCceEE-EcCCCCcCCC-Cc-eEEEecCCc
Q 005559 113 YNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVC-ELARPEVEEL-PH-CVAVIEPKY 187 (691)
Q Consensus 113 y~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~~~~~-~l~~~~l~~~-~~-~w~vi~~~~ 187 (691)
||- .++..+ +++..-. ...|..+.|..||..++++.. .++.+|-+...+.. +...-+..+. .+ .-++ |
T Consensus 288 wDGVS~rCv~-t~~~AH~--gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv----F 360 (430)
T KOG0640|consen 288 WDGVSNRCVR-TIGNAHG--GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV----F 360 (430)
T ss_pred eccccHHHHH-HHHhhcC--CceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh----h
Confidence 964 677776 5543211 356999999999999999885 48888888755433 3333222111 11 1122 4
Q ss_pred CCCCCeEEEEEe-CCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 188 TMTGSVEVLIGT-DAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 188 S~d~~~~vl~s~-d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
..+....++.+. .+.+..||..... ..|++++.-|.=||++--..+.+.|...+.|.
T Consensus 361 NhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 361 NHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred cCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 444444444443 4567888877443 46899999999999998777778888888875
No 147
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=3.2e-05 Score=86.15 Aligned_cols=184 Identities=12% Similarity=0.083 Sum_probs=112.0
Q ss_pred EEEEcCCCCe-EEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EE-EEEeCCe--EE
Q 005559 37 KVACAPFGGP-IAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDGT--VY 111 (691)
Q Consensus 37 ~vA~sp~GG~-IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv-~v~~DGt--V~ 111 (691)
.-+.||+|.- ++.++.+ ..++.|.+++..+.....+.-.. +......|||||+ ++ +...+|. +.
T Consensus 192 ~p~wSpDG~~~i~y~s~~---------~~~~~Iyv~dl~tg~~~~lt~~~--g~~~~~~~SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYG---------ERKPTLYKYNLYTGKKEKIASSQ--GMLVVSDVSKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred eEEECCCCCcEEEEEEcc---------CCCCEEEEEECCCCcEEEEecCC--CcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence 4677999985 7766532 13678999998766555554333 5677788999996 44 3444544 55
Q ss_pred EEeCCCCeeccccCCCccccccCeEEEEEeCCce-EEEecCC----eEEEEecCCCceEEEcCCCCcCCCCceEEEecCC
Q 005559 112 RYNIHAELIEPNASMGKECFEENVVECVFWGNGV-VCVTEAN----RYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (691)
Q Consensus 112 ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~-vllt~~~----~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~ 186 (691)
++++.|...+ .+..+ ........++++|- ++.+++. ++|.+ ++++....++... .. +. +.
T Consensus 261 ~~dl~~g~~~-~LT~~----~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~-dl~~g~~~rlt~~-----g~-~~---~~ 325 (419)
T PRK04043 261 LYDTNTKTLT-QITNY----PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK-KLNSGSVEQVVFH-----GK-NN---SS 325 (419)
T ss_pred EEECCCCcEE-EcccC----CCccCccEECCCCCEEEEEECCCCCceEEEE-ECCCCCeEeCccC-----CC-cC---ce
Confidence 5577554333 22222 11123457778883 4444432 46665 5555555555421 11 11 25
Q ss_pred cCCCCCeEEEEEeC---------CeEEEEecCCcc--cccC-CCeeEEEECCCCCEEEEEeeCC---eEEEEecC
Q 005559 187 YTMTGSVEVLIGTD---------AGILMLDEDGVQ--KVDD-TLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (691)
Q Consensus 187 ~S~d~~~~vl~s~d---------~ti~l~d~~~~~--~~~~-~~i~~Ia~SpnG~~IAl~t~dg---~i~I~ssd 246 (691)
+||||..+++.+.. ..|++.+.++.. .++. +.....+|||||+.|+..+..+ .|.+++.+
T Consensus 326 ~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 326 VSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred ECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 78999999988864 268898876544 3322 2334589999999999988643 46666665
No 148
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.43 E-value=0.00011 Score=81.96 Aligned_cols=156 Identities=15% Similarity=0.157 Sum_probs=87.0
Q ss_pred CEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeC-CceEEEecCCeEEEEecCCCceEEE
Q 005559 89 RLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANRYFCMADFATMKVCE 167 (691)
Q Consensus 89 ~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~~~~~~v~n~~~~~~~~ 167 (691)
.+..+.++|+|+.|+|..||.+.+|+-.+-..+ .++.+ .++.+.+ +-.+++..+..+....|+++.....
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k-~~G~g--------~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK-AFGSG--------LSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEE-EEEE---------SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCccc-ccCce--------eEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence 478899999999999999999999985443333 33322 2334434 4466666656555557876544333
Q ss_pred cCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc---cccCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 168 LARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 168 l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~---~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
++.+ -++=.+. .|. .+....++.|.++|..... .....++..|.+|++|+++|+.+.+ ++.|.+
T Consensus 105 i~~~-----~~~~~If------~G~-LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 105 IKLP-----FSVEKIF------GGN-LLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp ---S-----S-EEEEE-------SS-SEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred EcCC-----cccceEE------cCc-EEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 3310 1223332 144 4444555579999988555 4555668999999999999999854 777887
Q ss_pred cCCC--------------CceeeccCCCCCCCCeEEEecC
Q 005559 245 TNFS--------------SPVIDESCESALPPEQIAWCGM 270 (691)
Q Consensus 245 sd~~--------------~~l~e~d~~~~~~p~q~~WCG~ 270 (691)
.+++ ..+.|. ..+++...|.|+
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~----~~~IkSg~W~~d 207 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI----SERIKSGCWVED 207 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT
T ss_pred ecchhcccccccCchhceEEEEEe----cceeEEEEEEcC
Confidence 7755 222332 347889999998
No 149
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.42 E-value=2.2e-05 Score=80.80 Aligned_cols=221 Identities=14% Similarity=0.147 Sum_probs=144.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCce----eEEEEecCCCCCEEEEEecCCC-eEEEEEeCCe
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVL----ISETVWKNPGGRLIGMSWSEDQ-TLICVVQDGT 109 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~l----l~si~~~~~~~~Iv~~~fs~de-~Lv~v~~DGt 109 (691)
.+.-|.++++..||+.+ ....|+||...|.- ..+++-|. ..|.++.|+|.. ++|.++.|..
T Consensus 13 itchAwn~drt~iAv~~------------~~~evhiy~~~~~~~w~~~htls~Hd--~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSP------------NNHEVHIYSMLGADLWEPAHTLSEHD--KIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred eeeeeecCCCceEEecc------------CCceEEEEEecCCCCceeceehhhhC--cceeEEeecCCCCceeEccCCCC
Confidence 34668889999999986 45789999987764 55666666 789999999986 6899999999
Q ss_pred EEEEeC-C-CCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCC
Q 005559 110 VYRYNI-H-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVIEPK 186 (691)
Q Consensus 110 V~ly~~-~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~ 186 (691)
-++|.. . |+... ++-.- ..+.....++-++++--+++++ .++..|.-++....|=.... + ..|.-=+|..-+
T Consensus 79 ayVw~~~~~~~Wkp-tlvLl--RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKh-i-kkPirStv~sld 153 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKP-TLVLL--RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKH-I-KKPIRSTVTSLD 153 (361)
T ss_pred ccccccCCCCeecc-ceeEE--EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhh-h-CCccccceeeee
Confidence 999977 4 44333 22110 0023456666667776666655 57888887776555533210 0 113222333335
Q ss_pred cCCCCCeEEEEEeCCeEEEEe-----cCCcc------------------cccCCCeeEEEECCCCCEEEEEeeCCeEEEE
Q 005559 187 YTMTGSVEVLIGTDAGILMLD-----EDGVQ------------------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVN 243 (691)
Q Consensus 187 ~S~d~~~~vl~s~d~ti~l~d-----~~~~~------------------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ 243 (691)
+.|++-+.+..+.|+..++++ .++.. ....|.++.+.|||+|..||..+.|+++-+.
T Consensus 154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 667777777777777544443 33221 1345779999999999999999999999887
Q ss_pred ecCCCC-ceeeccCCCCCCCCeEEEecCceEEE
Q 005559 244 NTNFSS-PVIDESCESALPPEQIAWCGMDSVLL 275 (691)
Q Consensus 244 ssd~~~-~l~e~d~~~~~~p~q~~WCG~davvl 275 (691)
...-.. ......+. ..+-..+.|-.+..||.
T Consensus 234 da~~p~~~v~~~~~~-~lP~ls~~~ise~~vv~ 265 (361)
T KOG1523|consen 234 DAAGPSERVQSVATA-QLPLLSVSWISENSVVA 265 (361)
T ss_pred ecCCCchhccchhhc-cCCceeeEeecCCceee
Confidence 654222 22222222 23556888887777663
No 150
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.42 E-value=5.5e-05 Score=79.20 Aligned_cols=212 Identities=14% Similarity=0.207 Sum_probs=132.1
Q ss_pred CCeEEEEcCCCcee-EEEEecCCCCCEEEEEecCCCeEEEEEeCCe--EEEEeCC-C-CeeccccCCCccccccCeEEEE
Q 005559 65 LRKLRIFNSAGVLI-SETVWKNPGGRLIGMSWSEDQTLICVVQDGT--VYRYNIH-A-ELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 65 ~~~I~Iys~sG~ll-~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGt--V~ly~~~-G-~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
+.--++|+.+-... .+.. ..+..|+.|=|| ..-+++|+.+.. .++++.. + .+-+.+|+. .|.+++
T Consensus 25 ~~Gyk~~~~~~~~k~~~~~--~~~~~IvEmLFS-SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt-------~IL~Vr 94 (391)
T KOG2110|consen 25 KDGYKIFSCSPFEKCFSKD--TEGVSIVEMLFS-SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPT-------SILAVR 94 (391)
T ss_pred CCceeEEecCchHHhhccc--CCCeEEEEeecc-cceeEEEecCCCceEEEEEcccCceEEEEecCC-------ceEEEE
Confidence 34467777643222 1111 211479999998 334455555554 7788774 2 233556654 499999
Q ss_pred EeCCceEEEecCCeEEEEecCCCceE-EEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEe--CCeEEEEecCCcc----
Q 005559 140 FWGNGVVCVTEANRYFCMADFATMKV-CELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT--DAGILMLDEDGVQ---- 212 (691)
Q Consensus 140 ~~~~G~vllt~~~~~~~v~n~~~~~~-~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~--d~ti~l~d~~~~~---- 212 (691)
+..+-++++.... .+|.|+.+.++ .++...+ ..|...+.+.| +..+...++=+. .|.|++||....+
T Consensus 95 mNr~RLvV~Lee~--IyIydI~~MklLhTI~t~~--~n~~gl~AlS~--n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~ 168 (391)
T KOG2110|consen 95 MNRKRLVVCLEES--IYIYDIKDMKLLHTIETTP--PNPKGLCALSP--NNANCYLAYPGSTTSGDVVLFDTINLQPVNT 168 (391)
T ss_pred EccceEEEEEccc--EEEEecccceeehhhhccC--CCccceEeecc--CCCCceEEecCCCCCceEEEEEcccceeeeE
Confidence 9888877777665 23445544432 1221100 22444444432 233344444332 5689999998776
Q ss_pred -cccCCCeeEEEECCCCCEEEEEeeCCeE-EEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCc
Q 005559 213 -KVDDTLSQKMAVSPNGNFVACFTHDGRL-VVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEP 290 (691)
Q Consensus 213 -~~~~~~i~~Ia~SpnG~~IAl~t~dg~i-~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~ 290 (691)
..|.+++-.++|||+|.+||++++.||| +|.+..-++.+.||--+. .|-++ + +
T Consensus 169 I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~--~~~~I----------y-------------S 223 (391)
T KOG2110|consen 169 INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT--YPVSI----------Y-------------S 223 (391)
T ss_pred EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc--eeeEE----------E-------------E
Confidence 5699999999999999999999999987 677766578888885332 12111 1 5
Q ss_pred eEeecCCCeE-EeecCCceEEEecCcce
Q 005559 291 VQYFYDEPLV-LIPECDGVRILSNSSME 317 (691)
Q Consensus 291 v~f~~d~~~~-l~~E~DGvRIit~~~~e 317 (691)
+.|..|++.. .+++-+-|.||--++..
T Consensus 224 L~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECCCCCeEEEecCCCeEEEEEecccc
Confidence 7787787766 44555669999877655
No 151
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.40 E-value=8.6e-06 Score=89.72 Aligned_cols=144 Identities=21% Similarity=0.347 Sum_probs=90.9
Q ss_pred CCEEEEEecC--CCeEEEEEeCCeEEEEeCCCC-eeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCCce
Q 005559 88 GRLIGMSWSE--DQTLICVVQDGTVYRYNIHAE-LIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMK 164 (691)
Q Consensus 88 ~~Iv~~~fs~--de~Lv~v~~DGtV~ly~~~G~-~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~~~ 164 (691)
..|.++.|.| +++|.++.+||.|++|.+.-+ +.+ .... ..+|+.+ ...+++.+ +
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e-~~~t-----Pe~~lt~-----------h~eKI~sl------R 684 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE-NEMT-----PEKILTI-----------HGEKITSL------R 684 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCc-ccCC-----cceeeec-----------ccceEEEE------E
Confidence 4688888887 677999999999999977422 222 1110 1223221 00112221 1
Q ss_pred EEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCe
Q 005559 165 VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGR 239 (691)
Q Consensus 165 ~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~ 239 (691)
.. |- -..+.+.+++|.||.+||..... ..|.+.|..+++||+|+.+|+...||+
T Consensus 685 fH----------PL-----------AadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 685 FH----------PL-----------AADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred ec----------ch-----------hhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce
Confidence 10 11 12345677889999999988554 568899999999999999999999999
Q ss_pred EEEEecCC-CCceeeccCCCCCCCCeEEE-ecCceEEE
Q 005559 240 LVVNNTNF-SSPVIDESCESALPPEQIAW-CGMDSVLL 275 (691)
Q Consensus 240 i~I~ssd~-~~~l~e~d~~~~~~p~q~~W-CG~davvl 275 (691)
|+|+.--- .+.+.|=+.-....---+.| |....|++
T Consensus 744 ~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 744 LRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred EEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEE
Confidence 99997532 33455543222234457888 54444444
No 152
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.40 E-value=0.00023 Score=76.56 Aligned_cols=187 Identities=7% Similarity=0.042 Sum_probs=111.7
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC--Cce--eEEEEecCCCCCEEEEEecCCCeEEEEE--eCCe
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA--GVL--ISETVWKNPGGRLIGMSWSEDQTLICVV--QDGT 109 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s--G~l--l~si~~~~~~~~Iv~~~fs~de~Lv~v~--~DGt 109 (691)
..++++|+|..+++... .+..|.+|+.+ |++ +.+++ .++....+.|+|+++.+.+. .+|.
T Consensus 38 ~~l~~spd~~~lyv~~~-----------~~~~i~~~~~~~~g~l~~~~~~~---~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 38 QPMVISPDKRHLYVGVR-----------PEFRVLSYRIADDGALTFAAESP---LPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred ccEEECCCCCEEEEEEC-----------CCCcEEEEEECCCCceEEeeeec---CCCCceEEEECCCCCEEEEEEcCCCe
Confidence 35788999988877642 35778888754 543 33333 22567899999999965433 3899
Q ss_pred EEEEeCC--CCeec--cccCCCccccccCeEEEEEeCCceEEEecC--CeEEEEecCCC-ceEEEcC----CCCcCCCCc
Q 005559 110 VYRYNIH--AELIE--PNASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFAT-MKVCELA----RPEVEELPH 178 (691)
Q Consensus 110 V~ly~~~--G~~~~--~sl~~~~~~~~~~V~~~~~~~~G~vllt~~--~~~~~v~n~~~-~~~~~l~----~~~l~~~~~ 178 (691)
+.+|++. |.... ..+.. ......+.+.++|..+++.+ .+.+.+++++. ..+.... ..+.+..|+
T Consensus 104 v~v~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~ 178 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIEG-----LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR 178 (330)
T ss_pred EEEEEECCCCCCCCceeeccC-----CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc
Confidence 9999874 43321 01211 12356677888886554433 24455555543 1111000 011113466
Q ss_pred eEEEecCCcCCCCCeEEEEEe-CCeEEEEecCC---cc----cc----c--CCC--eeEEEECCCCCEEEEEee-CCeEE
Q 005559 179 CVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDG---VQ----KV----D--DTL--SQKMAVSPNGNFVACFTH-DGRLV 241 (691)
Q Consensus 179 ~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~~---~~----~~----~--~~~--i~~Ia~SpnG~~IAl~t~-dg~i~ 241 (691)
+.. |+++|+....... +++|.+|+.+. .. .. . .++ -..|.+||||+++...+. +++|.
T Consensus 179 ~~~-----~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~ 253 (330)
T PRK11028 179 HMV-----FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLIS 253 (330)
T ss_pred eEE-----ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEE
Confidence 543 5678887766665 88999998762 11 11 0 111 235999999999888865 57888
Q ss_pred EEecC
Q 005559 242 VNNTN 246 (691)
Q Consensus 242 I~ssd 246 (691)
++..+
T Consensus 254 v~~i~ 258 (330)
T PRK11028 254 VFSVS 258 (330)
T ss_pred EEEEe
Confidence 87654
No 153
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=2.3e-05 Score=87.44 Aligned_cols=199 Identities=14% Similarity=0.197 Sum_probs=123.9
Q ss_pred eEEEEecCCCCCEEEEEecCC-CeEEEEEeCCeEEEEeCCCC-eeccccCCCccccccCeEEEEEeCCceEEEecCC-eE
Q 005559 78 ISETVWKNPGGRLIGMSWSED-QTLICVVQDGTVYRYNIHAE-LIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RY 154 (691)
Q Consensus 78 l~si~~~~~~~~Iv~~~fs~d-e~Lv~v~~DGtV~ly~~~G~-~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~ 154 (691)
...+.|.. ..|++|+||.+ .+|++.-+||.+-+||+... +.+..+..+ ++.=++.-.|..|.-+++.+. ..
T Consensus 18 crf~d~~P--s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~----~drsIE~L~W~e~~RLFS~g~sg~ 91 (691)
T KOG2048|consen 18 CRFVDYKP--SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGP----EDRSIESLAWAEGGRLFSSGLSGS 91 (691)
T ss_pred EEEEeeec--cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecC----CCCceeeEEEccCCeEEeecCCce
Confidence 34566766 78999999986 55889999999999999654 344344444 344445556766666666553 23
Q ss_pred EEEecCCC-ceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-------cccCCCeeEEEECC
Q 005559 155 FCMADFAT-MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSP 226 (691)
Q Consensus 155 ~~v~n~~~-~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-------~~~~~~i~~Ia~Sp 226 (691)
+.-||+.. ...+.+.. .....|++ ...|.+..+.+...||.++.++..... .-..+.+..++++|
T Consensus 92 i~EwDl~~lk~~~~~d~----~gg~IWsi---ai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~ 164 (691)
T KOG2048|consen 92 ITEWDLHTLKQKYNIDS----NGGAIWSI---AINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP 164 (691)
T ss_pred EEEEecccCceeEEecC----CCcceeEE---EeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC
Confidence 33345442 22333321 22567876 345666666666678877777665222 23458899999999
Q ss_pred CCCEEEEEeeCCeEEEEecCCCCcee----eccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeec
Q 005559 227 NGNFVACFTHDGRLVVNNTNFSSPVI----DESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFY 295 (691)
Q Consensus 227 nG~~IAl~t~dg~i~I~ssd~~~~l~----e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~ 295 (691)
+|..||.++.||.|.+|+-.-.+.+. .+|.-.+ .-.-++|. |++..+.+..-|-..-.|+||-
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k-~~~~iVWS-----v~~Lrd~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK-REPTIVWS-----VLFLRDSTIASGDSAGTVTFWD 231 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeeeccccccc-CCceEEEE-----EEEeecCcEEEecCCceEEEEc
Confidence 99999999999999999865444433 2332111 12355563 2233444455555555777763
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.39 E-value=1.9e-05 Score=84.42 Aligned_cols=228 Identities=14% Similarity=0.105 Sum_probs=140.2
Q ss_pred CCCEEEEcCCCCeEEEEecCch---hhhhhcccCCCeEEEEcCCC--ceeEEE-EecCCCCCEEEEEecCC--CeEEEEE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSK---IVQLYAESALRKLRIFNSAG--VLISET-VWKNPGGRLIGMSWSED--QTLICVV 105 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k---~~~~~~~~~~~~I~Iys~sG--~ll~si-~~~~~~~~Iv~~~fs~d--e~Lv~v~ 105 (691)
....|+-=.+|..-+++-.|++ +|.++ +-.+.|=+||-.| +-.-.+ .++...++|-+|.|+|. .+.+..+
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~G--dK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVG--DKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEc--cCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 3334444445555555544443 33222 3578999999853 322222 22222278999999995 4578999
Q ss_pred eCCeEEEEeCCCCeeccccCCCccccccCeEEEEEe-CCceEEEecCCeEEEEecCCCc----eEEEcCCCCcCCCCceE
Q 005559 106 QDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW-GNGVVCVTEANRYFCMADFATM----KVCELARPEVEELPHCV 180 (691)
Q Consensus 106 ~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~-~~G~vllt~~~~~~~v~n~~~~----~~~~l~~~~l~~~~~~w 180 (691)
.|||+|+-|+.+...+..+....+ ......+.|. .++.++...+..++.+++...+ ..+++.. ....+.
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d--~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~----kKI~sv 328 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTD--NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK----KKITSV 328 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCcc--ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh----ccccee
Confidence 999999999987765534444322 3344556665 4777776666445555554311 2222221 124555
Q ss_pred EEecCCcCCCCCeEEEEEeCCeEEEEecCCcc---------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC-CCCc
Q 005559 181 AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSP 250 (691)
Q Consensus 181 ~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~---------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd-~~~~ 250 (691)
++-| ......++.+.|+|..+||..... -.|..+|.+.+|||.|-.|++...|.+|.||++. ++..
T Consensus 329 ~~NP----~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 329 ALNP----VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred ecCC----CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence 5543 245678889999999999988544 2467889999999999889999999999999873 3322
Q ss_pred ---eee--cc--CCCCCCCCeEEEecCceE
Q 005559 251 ---VID--ES--CESALPPEQIAWCGMDSV 273 (691)
Q Consensus 251 ---l~e--~d--~~~~~~p~q~~WCG~dav 273 (691)
+++ ++ ++.-..|.+-+|-=++.+
T Consensus 405 ~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~l 434 (498)
T KOG4328|consen 405 DEPLGTIPHNNRTGRWLTPFKAAWDPDYNL 434 (498)
T ss_pred CCccceeeccCcccccccchhheeCCCccE
Confidence 222 11 222335667777654443
No 155
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.37 E-value=5.6e-05 Score=83.83 Aligned_cols=167 Identities=17% Similarity=0.272 Sum_probs=105.6
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEE-EEEeC---CeEEEEeCC-CCeeccccCCCccccccCeEEE
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLI-CVVQD---GTVYRYNIH-AELIEPNASMGKECFEENVVEC 138 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv-~v~~D---GtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~ 138 (691)
....|.+++.+|.....+..+. +.+....||||++.+ .+..+ ..+++|++. |+..... . . ...+..+
T Consensus 168 ~~~~l~~~d~~g~~~~~l~~~~--~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~-~----~~~~~~~ 239 (417)
T TIGR02800 168 RRYELQVADYDGANPQTITRSR--EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-S-F----PGMNGAP 239 (417)
T ss_pred CcceEEEEcCCCCCCEEeecCC--CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-c-C----CCCccce
Confidence 4567889999888777777554 579999999999854 44433 478899986 4443211 1 1 1234556
Q ss_pred EEeCCceEE-EecC----CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeC---CeEEEEecCC
Q 005559 139 VFWGNGVVC-VTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDG 210 (691)
Q Consensus 139 ~~~~~G~vl-lt~~----~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d---~ti~l~d~~~ 210 (691)
.++++|..+ ++.+ .++|.+ ++.+.....+... +. ....|.|++||+.+++.+.. ..||+++.++
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~-d~~~~~~~~l~~~-----~~--~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~ 311 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVM-DLDGKQLTRLTNG-----PG--IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG 311 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEE-ECCCCCEEECCCC-----CC--CCCCEEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 788888533 3322 235544 5554445555421 10 12244678899988877653 2699999875
Q ss_pred cc--c--ccCCCeeEEEECCCCCEEEEEeeCC---eEEEEecC
Q 005559 211 VQ--K--VDDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTN 246 (691)
Q Consensus 211 ~~--~--~~~~~i~~Ia~SpnG~~IAl~t~dg---~i~I~ssd 246 (691)
.. . ........+++||+|++|+..+.++ .|++++.+
T Consensus 312 ~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 312 GEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred CCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 44 2 2344566889999999999988764 56666543
No 156
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.37 E-value=4.9e-05 Score=79.59 Aligned_cols=176 Identities=11% Similarity=0.183 Sum_probs=114.9
Q ss_pred eEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCC-CCeeccc
Q 005559 46 PIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AELIEPN 123 (691)
Q Consensus 46 ~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~-G~~~~~s 123 (691)
++|++.- ...+.+++++- .+..|-.+.+.. .|+++-++ -.+|||+.++. +.|||+. -+++. +
T Consensus 58 LvaiV~~----------~qpr~Lkv~~~Kk~~~ICe~~fpt---~IL~VrmN-r~RLvV~Lee~-IyIydI~~MklLh-T 121 (391)
T KOG2110|consen 58 LVAIVSI----------KQPRKLKVVHFKKKTTICEIFFPT---SILAVRMN-RKRLVVCLEES-IYIYDIKDMKLLH-T 121 (391)
T ss_pred eeEEEec----------CCCceEEEEEcccCceEEEEecCC---ceEEEEEc-cceEEEEEccc-EEEEecccceeeh-h
Confidence 7777752 13477999986 688999999864 79999998 56677777776 9999995 35555 4
Q ss_pred cCCCccccccCeEEEEEeCCceEEEe----cCCeEEEEecCCCceE-EEcCCCCcCCCCceEEEecCCcCCCCCeEEEEE
Q 005559 124 ASMGKECFEENVVECVFWGNGVVCVT----EANRYFCMADFATMKV-CELARPEVEELPHCVAVIEPKYTMTGSVEVLIG 198 (691)
Q Consensus 124 l~~~~~~~~~~V~~~~~~~~G~vllt----~~~~~~~v~n~~~~~~-~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s 198 (691)
+..- +....++....+..++.-++- ..|+++.. |..+-++ ..+. .+....+++ .||++|.++++++
T Consensus 122 I~t~-~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~-d~~nl~~v~~I~-----aH~~~lAal--afs~~G~llATAS 192 (391)
T KOG2110|consen 122 IETT-PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF-DTINLQPVNTIN-----AHKGPLAAL--AFSPDGTLLATAS 192 (391)
T ss_pred hhcc-CCCccceEeeccCCCCceEEecCCCCCceEEEE-EcccceeeeEEE-----ecCCceeEE--EECCCCCEEEEec
Confidence 3321 011345666566555544443 22444433 3322211 1221 233334444 5899999999999
Q ss_pred eCCeEEE-EecCCcc-------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 199 TDAGILM-LDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 199 ~d~ti~l-~d~~~~~-------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
..|||.. ++..+.+ +.....|.+++|||++++||+.+.++||+|..-+
T Consensus 193 eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 193 EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 9888554 5554333 1234458899999999999999999999999765
No 157
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=2.5e-06 Score=95.40 Aligned_cols=191 Identities=14% Similarity=0.225 Sum_probs=125.7
Q ss_pred CCCeEEEEcCC-CceeEEEEecCCCCCEEEEEecCCCeEE-EEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEE
Q 005559 64 ALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVF 140 (691)
Q Consensus 64 ~~~~I~Iys~s-G~ll~si~~~~~~~~Iv~~~fs~de~Lv-~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~ 140 (691)
.+..+-+|+.. =.-+.++..|. +.|-++.|..+|.|+ .+..+|+|++||+ .++..+ ++..+ -..+..+.|
T Consensus 48 ~~~k~~L~~i~kp~~i~S~~~he--spIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr-tLtgh----~~~~~sv~f 120 (825)
T KOG0267|consen 48 EDEKVNLWAIGKPNAITSLTGHE--SPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR-TLTGH----LLNITSVDF 120 (825)
T ss_pred CceeeccccccCCchhheeeccC--CcceeeecCcchhhhcccccCCceeeeehhhhhhhh-hhhcc----ccCcceeee
Confidence 45666677742 23455677887 789999999999976 7889999999999 466666 44433 234555555
Q ss_pred eCCceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecC--Ccc---ccc
Q 005559 141 WGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ---KVD 215 (691)
Q Consensus 141 ~~~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~--~~~---~~~ 215 (691)
.|.|...+.++ .|..+.+||.. ||. ..|
T Consensus 121 ~P~~~~~a~gS-----------------------------------------------tdtd~~iwD~Rk~Gc~~~~~s~ 153 (825)
T KOG0267|consen 121 HPYGEFFASGS-----------------------------------------------TDTDLKIWDIRKKGCSHTYKSH 153 (825)
T ss_pred ccceEEecccc-----------------------------------------------ccccceehhhhccCceeeecCC
Confidence 55555443322 22223334333 332 235
Q ss_pred CCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEe---------cCceEEEEEcCe-EEEEc
Q 005559 216 DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC---------GMDSVLLYWNDM-LVMVA 285 (691)
Q Consensus 216 ~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC---------G~davvl~~~~~-l~liG 285 (691)
.+-+.-+.|||+|+++|.+++|.+++||+.--++.+.||.+++ .+...+.+- |.|.++-.|+-+ ..++|
T Consensus 154 ~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e-~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 154 TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE-GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred cceeEEEeecCCCceeeccCCcceeeeeccccccccccccccc-ccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 5667788999999999999999999999876567777887652 333344432 789999999876 66776
Q ss_pred CCCC------ceEeecCCCeEEeecCCceE
Q 005559 286 PQAE------PVQYFYDEPLVLIPECDGVR 309 (691)
Q Consensus 286 p~~~------~v~f~~d~~~~l~~E~DGvR 309 (691)
..+. ...|..++..++..|-+.++
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchhhhh
Confidence 5442 56676666555555444444
No 158
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=5.8e-06 Score=90.40 Aligned_cols=212 Identities=15% Similarity=0.132 Sum_probs=133.6
Q ss_pred CCCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEc------C-CC----ceeEEEEecCCCCCEEEEEec
Q 005559 28 WKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN------S-AG----VLISETVWKNPGGRLIGMSWS 96 (691)
Q Consensus 28 w~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys------~-sG----~ll~si~~~~~~~~Iv~~~fs 96 (691)
|.........|+++++|.-+=..+ .|++|+.|+ + ++ .+...+.+|. +.+..+.+|
T Consensus 340 fraH~gPVl~v~v~~n~~~~ysgg------------~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght--davw~l~~s 405 (577)
T KOG0642|consen 340 FRAHEGPVLCVVVPSNGEHCYSGG------------IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT--DAVWLLALS 405 (577)
T ss_pred EecccCceEEEEecCCceEEEeec------------cCceeeeeccCCCCCcccccCcchhccceeccc--cceeeeeec
Confidence 333344555677777777665543 799999992 2 12 4566678887 889999999
Q ss_pred CC-CeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCC-CceEEEcCCCCcC
Q 005559 97 ED-QTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFA-TMKVCELARPEVE 174 (691)
Q Consensus 97 ~d-e~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~-~~~~~~l~~~~l~ 174 (691)
+. .+|++.+.|||||.|++.++-.. +|+...+-...-..+..-|.--..+......++.+.+.+ ......+.....+
T Consensus 406 ~~~~~Llscs~DgTvr~w~~~~~~~~-~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~ 484 (577)
T KOG0642|consen 406 STKDRLLSCSSDGTVRLWEPTEESPC-TFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASP 484 (577)
T ss_pred ccccceeeecCCceEEeeccCCcCcc-ccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCC
Confidence 85 56899999999999988765543 454432211111233222333344444444455555544 2233333221111
Q ss_pred ---CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 175 ---ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 175 ---~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
..|..--|+. -+++...+.+-.|.+|..+|..... ..+...++.+++-|||-++++.+.||.+.+|+.|
T Consensus 485 ~~~~~~~in~vVs---~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 485 GPRRYPQINKVVS---HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred cccccCccceEEe---cCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 1144444442 2456666666668888888766433 3477889999999999999999999999999987
Q ss_pred CCCceeeccCC
Q 005559 247 FSSPVIDESCE 257 (691)
Q Consensus 247 ~~~~l~e~d~~ 257 (691)
-.....|...+
T Consensus 562 ~k~~~~es~~~ 572 (577)
T KOG0642|consen 562 VKTCVLESTAH 572 (577)
T ss_pred chheeeccccc
Confidence 67766665543
No 159
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.35 E-value=2.3e-05 Score=78.05 Aligned_cols=160 Identities=16% Similarity=0.184 Sum_probs=102.4
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccC--CCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEE--eCCe
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESA--LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVV--QDGT 109 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~--~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~--~DGt 109 (691)
+..+.-+|.|..+++.-+. +... .+.+. .-.|...+..+..+..+.-+.. +.|.++.|+|+++ ++++. .+++
T Consensus 8 ~~~~~W~~~G~~l~~~~~~-~~~~-~~ks~~~~~~l~~~~~~~~~~~~i~l~~~-~~I~~~~WsP~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQT-RVDK-SGKSYYGEFELFYLNEKNIPVESIELKKE-GPIHDVAWSPNGNEFAVIYGSMPAK 84 (194)
T ss_pred eEEEEecccCCEEEEEEEE-eecc-CcceEEeeEEEEEEecCCCccceeeccCC-CceEEEEECcCCCEEEEEEccCCcc
Confidence 3455566777777766431 1110 01122 3445555557888888887652 5799999999977 44443 5679
Q ss_pred EEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecC-Ce---EEEEecCCCceEEEcCCCCcCCCCceEEEecC
Q 005559 110 VYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NR---YFCMADFATMKVCELARPEVEELPHCVAVIEP 185 (691)
Q Consensus 110 V~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~---~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~ 185 (691)
|.+||..|+.+. +++. ..+..+.++|+|..+++++ ++ ...+||..+... +... +.+.+-.+
T Consensus 85 v~lyd~~~~~i~-~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~--i~~~---~~~~~t~~--- 149 (194)
T PF08662_consen 85 VTLYDVKGKKIF-SFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK--ISTF---EHSDATDV--- 149 (194)
T ss_pred cEEEcCcccEeE-eecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE--eecc---ccCcEEEE---
Confidence 999999988766 5542 3466778889997777754 22 366777664433 2210 22333223
Q ss_pred CcCCCCCeEEEEEe------CCeEEEEecCCcc
Q 005559 186 KYTMTGSVEVLIGT------DAGILMLDEDGVQ 212 (691)
Q Consensus 186 ~~S~d~~~~vl~s~------d~ti~l~d~~~~~ 212 (691)
.|||||...++++. |+.+.+|+.+|.+
T Consensus 150 ~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 150 EWSPDGRYLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EEcCCCCEEEEEEeccceeccccEEEEEecCeE
Confidence 69999999988874 7788888888755
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.34 E-value=0.00025 Score=75.25 Aligned_cols=181 Identities=18% Similarity=0.238 Sum_probs=125.0
Q ss_pred cCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC--ceeEEEEecCCCCCEEEEEecCCCeE-EEEEe-CCeEEEEeCC
Q 005559 41 APFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--VLISETVWKNPGGRLIGMSWSEDQTL-ICVVQ-DGTVYRYNIH 116 (691)
Q Consensus 41 sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG--~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~-DGtV~ly~~~ 116 (691)
+++|..++.... ..++.+++|+..+ ..+..+..|. ..|..+.|+|++.. +.... ||++++|+..
T Consensus 119 ~~~~~~~~~~~~----------~~d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (466)
T COG2319 119 SPDGNSILLASS----------SLDGTVKLWDLSTPGKLIRTLEGHS--ESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186 (466)
T ss_pred CCCcceEEeccC----------CCCccEEEEEecCCCeEEEEEecCc--ccEEEEEECCCCCEEEecCCCCCceEEEEcC
Confidence 777774444421 2488999999985 8888899988 78999999999974 45554 9999999987
Q ss_pred C-CeeccccCCCccccccCeEEEEEeCCce-EEEe-cCCeEEEEecCCCc-eEE-EcCCCCcCCCCceEEEecCCcCCCC
Q 005559 117 A-ELIEPNASMGKECFEENVVECVFWGNGV-VCVT-EANRYFCMADFATM-KVC-ELARPEVEELPHCVAVIEPKYTMTG 191 (691)
Q Consensus 117 G-~~~~~sl~~~~~~~~~~V~~~~~~~~G~-vllt-~~~~~~~v~n~~~~-~~~-~l~~~~l~~~~~~w~vi~~~~S~d~ 191 (691)
. +... .+..+ ...|..+.+.++|- .+++ +......+|+.... ... .+. .+.... +. .|++++
T Consensus 187 ~~~~~~-~~~~~----~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-----~~~~~~-~~--~~~~~~ 253 (466)
T COG2319 187 TGKPLS-TLAGH----TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-----GHSDSV-VS--SFSPDG 253 (466)
T ss_pred CCceEE-eeccC----CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-----CCCcce-eE--eECCCC
Confidence 4 4444 44433 46688888888885 6665 33333336654422 222 122 112221 11 477888
Q ss_pred CeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 192 SVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 192 ~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
...+..+.++++.+|+..... ..+..++..+.++|++..++..+.++.+.+|...
T Consensus 254 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 254 SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence 777778889999999987444 1457889999999988888888778888888443
No 161
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.34 E-value=2.1e-05 Score=92.60 Aligned_cols=190 Identities=20% Similarity=0.285 Sum_probs=119.0
Q ss_pred EcCCCceeEEEEecCCCCCEEEEEecCCC-eE-EEEEeCCeEEEEeCC---CCe----eccccCCCccccccCeEEEEE-
Q 005559 71 FNSAGVLISETVWKNPGGRLIGMSWSEDQ-TL-ICVVQDGTVYRYNIH---AEL----IEPNASMGKECFEENVVECVF- 140 (691)
Q Consensus 71 ys~sG~ll~si~~~~~~~~Iv~~~fs~de-~L-v~v~~DGtV~ly~~~---G~~----~~~sl~~~~~~~~~~V~~~~~- 140 (691)
|+..|.+++.+--|+ +.+..++-++++ .+ ++++.|||||+||.. |+. .+-++.. + ...+..+..
T Consensus 1034 W~p~G~lVAhL~Ehs--~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~--~--~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHS--SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP--E--GSRVEKVTMC 1107 (1431)
T ss_pred CCccceEeehhhhcc--ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec--c--CCceEEEEec
Confidence 899999999999888 778899888766 55 789999999999874 331 0112221 1 234444444
Q ss_pred -eCCceEEEecCCeEE--EEecCCCce--EEEcCCCCcCCCCceEEEecCCcC-CCCC-eEEEEEeCCeEEEEecCCcc-
Q 005559 141 -WGNGVVCVTEANRYF--CMADFATMK--VCELARPEVEELPHCVAVIEPKYT-MTGS-VEVLIGTDAGILMLDEDGVQ- 212 (691)
Q Consensus 141 -~~~G~vllt~~~~~~--~v~n~~~~~--~~~l~~~~l~~~~~~w~vi~~~~S-~d~~-~~vl~s~d~ti~l~d~~~~~- 212 (691)
|++-+++.|.+|.+. .|+..+.++ ......+.+...+..-..- .|. .+++ .++.+...+.|..||.....
T Consensus 1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~--a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMH--AFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEee--cccccccceeEEEEEeccceEEecchhhhh
Confidence 555566666666432 233222111 1111112221112111111 122 2344 55666667889999987544
Q ss_pred ------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEe
Q 005559 213 ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (691)
Q Consensus 213 ------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC 268 (691)
.+..|-|+.++++|-|..++++|..|.+-+|+--|+..++++.--...++..|.=|
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~ 1247 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLC 1247 (1431)
T ss_pred HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEee
Confidence 45678899999999999999999999999999999998886653333344444333
No 162
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.33 E-value=3.4e-06 Score=90.19 Aligned_cols=219 Identities=13% Similarity=0.131 Sum_probs=155.7
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeE
Q 005559 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTV 110 (691)
Q Consensus 32 ~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV 110 (691)
+|.-+.+-.+.+|..+++.. .++-|--|+- +++|+..|... ..|.++.|-++++++.|.+..-+
T Consensus 129 eFGPY~~~ytrnGrhlllgG------------rKGHlAa~Dw~t~~L~~Ei~v~---Etv~Dv~~LHneq~~AVAQK~y~ 193 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGG------------RKGHLAAFDWVTKKLHFEINVM---ETVRDVTFLHNEQFFAVAQKKYV 193 (545)
T ss_pred ccCCeeeeecCCccEEEecC------------Cccceeeeecccceeeeeeehh---hhhhhhhhhcchHHHHhhhhceE
Confidence 46678999999999998875 5788888885 89999999875 47999999999999988888889
Q ss_pred EEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCC-eEEEEecCCCc-eEEEcCCCCcC-CCCceEEEecCCc
Q 005559 111 YRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATM-KVCELARPEVE-ELPHCVAVIEPKY 187 (691)
Q Consensus 111 ~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~~-~~~~l~~~~l~-~~~~~w~vi~~~~ 187 (691)
.+||-.|.-+. -+..+ .+|....|-|.-+.+++.+. .+....|++.. .+-.+. .+ +....+. .
T Consensus 194 yvYD~~GtElH-Clk~~-----~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~---t~~G~~~vm~-----q 259 (545)
T KOG1272|consen 194 YVYDNNGTELH-CLKRH-----IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR---TGAGRTDVMK-----Q 259 (545)
T ss_pred EEecCCCcEEe-ehhhc-----CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH---ccCCccchhh-----c
Confidence 99999997665 44433 55777788898877777664 34444565522 221221 10 1123333 2
Q ss_pred CCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEec-CCCCceeeccCCCCCC
Q 005559 188 TMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT-NFSSPVIDESCESALP 261 (691)
Q Consensus 188 S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss-d~~~~l~e~d~~~~~~ 261 (691)
.|-+.++.+...+|||-+|+.+... .-|.+||..|++-|+|+++|+.+.|..++||+. .|.+... +-+ +.+
T Consensus 260 NP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t-~~t--p~~ 336 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT-YRT--PHP 336 (545)
T ss_pred CCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccce-eec--CCC
Confidence 3567778888889999999999766 348999999999999999999999999999985 4554432 222 223
Q ss_pred CCeEEEecCceEEEEEcCeEE
Q 005559 262 PEQIAWCGMDSVLLYWNDMLV 282 (691)
Q Consensus 262 p~q~~WCG~davvl~~~~~l~ 282 (691)
...+..+.-.-++++|.+-+.
T Consensus 337 a~~ls~SqkglLA~~~G~~v~ 357 (545)
T KOG1272|consen 337 ASNLSLSQKGLLALSYGDHVQ 357 (545)
T ss_pred ccccccccccceeeecCCeee
Confidence 334444444445555554443
No 163
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.31 E-value=1.2e-05 Score=86.64 Aligned_cols=228 Identities=11% Similarity=0.108 Sum_probs=152.5
Q ss_pred CEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccc--cccCeEEEEEeCCceEEEecCC-eEEEEecCCCceE
Q 005559 89 RLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKEC--FEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKV 165 (691)
Q Consensus 89 ~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~--~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~~~~ 165 (691)
-|..+..|..-+-|--...|.|+|||+.+.-.++.... -+| .++-|..|++.++|-.++++.. ..+.||++..|.+
T Consensus 421 vVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~Pvsq-Ldcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp 499 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQ-LDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP 499 (705)
T ss_pred EEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccc-ccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc
Confidence 35556666666666666778899999965433322211 111 2566999999999999999774 5778899887654
Q ss_pred EEcCCCCcC-CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCe
Q 005559 166 CELARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGR 239 (691)
Q Consensus 166 ~~l~~~~l~-~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~ 239 (691)
+.=.+ +. ..|.|.++ ..|||..+...--.||.|.+||..+.. ..+......|.+|++|..|=+++-|++
T Consensus 500 rikae--ltssapaCyAL---a~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 500 RIKAE--LTSSAPACYAL---AISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred chhhh--cCCcchhhhhh---hcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 42121 22 34888887 578888888777789999999998765 567888999999999999999999999
Q ss_pred EEEEecCCCCceeeccCCCCCCCCeEEEe-cCceEEEEEcC-----------eEEEEcCCCC---ceEeecCCCeEEeec
Q 005559 240 LVVNNTNFSSPVIDESCESALPPEQIAWC-GMDSVLLYWND-----------MLVMVAPQAE---PVQYFYDEPLVLIPE 304 (691)
Q Consensus 240 i~I~ssd~~~~l~e~d~~~~~~p~q~~WC-G~davvl~~~~-----------~l~liGp~~~---~v~f~~d~~~~l~~E 304 (691)
++-|+---.+.+.++|-.+ ....+..| ..|=+++--++ +-++++-... +++|.|-+.-++.+.
T Consensus 575 vRcWDlregrqlqqhdF~S--QIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDFSS--QIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred eeehhhhhhhhhhhhhhhh--hheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecC
Confidence 9999765566677776433 44555566 23333333322 2223332222 688888888888888
Q ss_pred CCc-eEEEecCcceeeeccch
Q 005559 305 CDG-VRILSNSSMEFLQRVPA 324 (691)
Q Consensus 305 ~DG-vRIit~~~~efL~~Vp~ 324 (691)
.|. +-.|.+--.--+-.+++
T Consensus 653 kDnlLnawrtPyGasiFqskE 673 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASIFQSKE 673 (705)
T ss_pred chhhhhhccCccccceeeccc
Confidence 776 55555443333333433
No 164
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.28 E-value=3.1e-05 Score=79.32 Aligned_cols=155 Identities=14% Similarity=0.188 Sum_probs=116.5
Q ss_pred eeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEeCCceEEEecCC-e
Q 005559 77 LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-R 153 (691)
Q Consensus 77 ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~ 153 (691)
++..+.+|. +.|++-.|-..++ .|+++-|.|..+||. .|+..+ .+.+| +.+...|.-.++--.++|++. .
T Consensus 264 Pl~~ltgH~--~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~-~LtGH----d~ELtHcstHptQrLVvTsSrDt 336 (481)
T KOG0300|consen 264 PLMRLTGHR--AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN-ILTGH----DSELTHCSTHPTQRLVVTSSRDT 336 (481)
T ss_pred eeeeeeccc--cceEehhhhcCcceeeeeeccccceeeeeccCceec-cccCc----chhccccccCCcceEEEEeccCc
Confidence 566678887 8899999988776 688999999999999 588888 77766 567888888898877888775 4
Q ss_pred EEEEecCCCc--eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECC
Q 005559 154 YFCMADFATM--KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSP 226 (691)
Q Consensus 154 ~~~v~n~~~~--~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~Sp 226 (691)
.+.+|+|.+. .+-.|.. +....-++ .|. .+..+|..+.|.||++|+..+.. --...|+.++++|-
T Consensus 337 TFRLWDFReaI~sV~VFQG----HtdtVTS~---vF~-~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~ 408 (481)
T KOG0300|consen 337 TFRLWDFREAIQSVAVFQG----HTDTVTSV---VFN-TDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSK 408 (481)
T ss_pred eeEeccchhhcceeeeecc----cccceeEE---EEe-cCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeec
Confidence 7888887532 1222221 11222222 243 45667888889999999998766 13678999999999
Q ss_pred CCCEEEEEeeCCeEEEEecC
Q 005559 227 NGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 227 nG~~IAl~t~dg~i~I~ssd 246 (691)
-++.||+-.++..+.+++-+
T Consensus 409 g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 409 GHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred CCceEEeccCCceEEEEecC
Confidence 99999999888888888655
No 165
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=9.1e-05 Score=82.84 Aligned_cols=187 Identities=9% Similarity=0.024 Sum_probs=109.4
Q ss_pred EEEEcCCCCeEEE--EecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeE-EEEEe-CC----
Q 005559 37 KVACAPFGGPIAV--IRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQ-DG---- 108 (691)
Q Consensus 37 ~vA~sp~GG~IA~--~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~-DG---- 108 (691)
.=+.||+|.-+|+ ++.+ ...+.|.+.+.+|..-..+.-.. +......|||||+. +.+++ +|
T Consensus 189 sP~wSPDG~~~~~~y~S~~---------~g~~~I~~~~l~~g~~~~lt~~~--g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYK---------LGVPKIFLGSLENPAGKKILALQ--GNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred cceEccCCCceEEEEEEcc---------CCCceEEEEECCCCCceEeecCC--CCccceEECCCCCEEEEEECCCCCcce
Confidence 3479999987554 5532 24688999998876655555433 56667899999974 44432 33
Q ss_pred eEEEEeCC----CCeeccccCCCccccccCeEEEEEeCCceEEE-ecC--C--eEEEEec-CCCceEEEcCCCCcCCCCc
Q 005559 109 TVYRYNIH----AELIEPNASMGKECFEENVVECVFWGNGVVCV-TEA--N--RYFCMAD-FATMKVCELARPEVEELPH 178 (691)
Q Consensus 109 tV~ly~~~----G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vll-t~~--~--~~~~v~n-~~~~~~~~l~~~~l~~~~~ 178 (691)
.+..|++. |+..+.+ ... ........++++|.-++ +++ + ++|.++- ..+.....++.. ..
T Consensus 258 ~~~~~~~~~g~~g~~~~lt-~~~----~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~----~~- 327 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLL-NEA----FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK----YR- 327 (428)
T ss_pred eEEEeecccCCCCcceEee-cCC----CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC----CC-
Confidence 23335553 2322211 111 11224567788986333 322 2 3555431 112223444321 11
Q ss_pred eEEEecCCcCCCCCeEEEEEeC---CeEEEEecCCcc--ccc--CCCeeEEEECCCCCEEEEEeeC---CeEEEEecC
Q 005559 179 CVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDGVQ--KVD--DTLSQKMAVSPNGNFVACFTHD---GRLVVNNTN 246 (691)
Q Consensus 179 ~w~vi~~~~S~d~~~~vl~s~d---~ti~l~d~~~~~--~~~--~~~i~~Ia~SpnG~~IAl~t~d---g~i~I~ssd 246 (691)
.+..|.+||||+.+++.+.+ ..|++++.++.. .+. ...+...++||||+.|++.+.+ +.|++++.+
T Consensus 328 --~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 328 --NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred --CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECC
Confidence 12345688999999888764 368999987554 222 2356789999999999876543 457777655
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.27 E-value=1.8e-05 Score=83.31 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=29.4
Q ss_pred EEEecCCCCCEEEEEecC--CCeEEEEEeCCeEEEEeCCCC
Q 005559 80 ETVWKNPGGRLIGMSWSE--DQTLICVVQDGTVYRYNIHAE 118 (691)
Q Consensus 80 si~~~~~~~~Iv~~~fs~--de~Lv~v~~DGtV~ly~~~G~ 118 (691)
.+.+|. +++.++.|+| |..+.++++|.||.+|.+.-+
T Consensus 76 ~v~GHt--~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~ 114 (472)
T KOG0303|consen 76 LVCGHT--APVLDIDWCPFNDCVIASGSEDTKVMVWQIPEN 114 (472)
T ss_pred CccCcc--ccccccccCccCCceeecCCCCceEEEEECCCc
Confidence 345677 8999999999 344678999999999977533
No 167
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1e-05 Score=85.76 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=88.4
Q ss_pred EEEEecCCCe-EEEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCCceEEEc
Q 005559 91 IGMSWSEDQT-LICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCEL 168 (691)
Q Consensus 91 v~~~fs~de~-Lv~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~~~~~~l 168 (691)
..|+|+.++. |.++..||++|+|++. -+... ....+ ..+|-+..|+++|.++++-+.+--.||+.+....+.-
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-~e~~~----~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-EEIAH----HAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh-hhHhh----cCccccceeCCCCcEEEEecCCceEEEEeccCchhhh
Confidence 6678888855 6799999999999964 33222 22222 3569999999999999987776667777654322111
Q ss_pred CCCCcC-CC-CceEEEecCCcCCCC---CeEEEEEe--CCeEE-----EEecCCcc----c-ccCCCeeEEEECCCCCEE
Q 005559 169 ARPEVE-EL-PHCVAVIEPKYTMTG---SVEVLIGT--DAGIL-----MLDEDGVQ----K-VDDTLSQKMAVSPNGNFV 231 (691)
Q Consensus 169 ~~~~l~-~~-~~~w~vi~~~~S~d~---~~~vl~s~--d~ti~-----l~d~~~~~----~-~~~~~i~~Ia~SpnG~~I 231 (691)
..|.-+ .. ..| .|+.|+ ...+.+.. .+.|. +|+.+... . .....++.|++|+||+|+
T Consensus 223 ~t~~~k~~~~~~c------RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 223 KTPFSKDEMFSSC------RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFL 296 (398)
T ss_pred cCCcccchhhhhc------eecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEE
Confidence 111000 00 122 344444 22222222 22233 34443221 1 234579999999999999
Q ss_pred EEEeeCCeEEEEec
Q 005559 232 ACFTHDGRLVVNNT 245 (691)
Q Consensus 232 Al~t~dg~i~I~ss 245 (691)
|++|.+|-+-|+..
T Consensus 297 AlGT~dGsVai~~~ 310 (398)
T KOG0771|consen 297 ALGTMDGSVAIYDA 310 (398)
T ss_pred EEeccCCcEEEEEe
Confidence 99999999988764
No 168
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.23 E-value=0.00075 Score=73.31 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=101.1
Q ss_pred CCCeEEEEcCCCceeEEEEe---cCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEE
Q 005559 64 ALRKLRIFNSAGVLISETVW---KNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVF 140 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~---~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~ 140 (691)
.+.-+.+|+..|.-+..-.. ......|.+|.|.+||+.+++.++|++.||+..|.........| +.+|.....
T Consensus 220 Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH----~ggv~~L~~ 295 (626)
T KOG2106|consen 220 GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAH----DGGVFSLCM 295 (626)
T ss_pred CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeec----CCceEEEEE
Confidence 57889999998765554332 11124699999999999999999999999999877643233355 688988888
Q ss_pred eCCceEEEecCCeEEEEecCC--CceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEe-CCeEEEEecCCcc----c
Q 005559 141 WGNGVVCVTEANRYFCMADFA--TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ----K 213 (691)
Q Consensus 141 ~~~G~vllt~~~~~~~v~n~~--~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~~~~----~ 213 (691)
-.+|..+--+..+-+..|+-+ ..+..++|+ .....-.|.+ |...++++. .++|..=+..+.. .
T Consensus 296 lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe----~~G~iRtv~e------~~~di~vGTtrN~iL~Gt~~~~f~~~v~ 365 (626)
T KOG2106|consen 296 LRDGTLLSGGKDRKIILWDDNYRKLRETELPE----QFGPIRTVAE------GKGDILVGTTRNFILQGTLENGFTLTVQ 365 (626)
T ss_pred ecCccEeecCccceEEeccccccccccccCch----hcCCeeEEec------CCCcEEEeeccceEEEeeecCCceEEEE
Confidence 899988774445666666622 122222221 1111223332 111133333 3333332322211 2
Q ss_pred ccCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 214 VDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 214 ~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
.|......++..|+...+++.++|+.+.+|+
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 3445566677777766677777777777775
No 169
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.23 E-value=3.5e-06 Score=86.57 Aligned_cols=213 Identities=15% Similarity=0.234 Sum_probs=128.5
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-E-EEEEeCCeEEEEe
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-L-ICVVQDGTVYRYN 114 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-L-v~v~~DGtV~ly~ 114 (691)
-..+||+|..||+..+. .+|. +....-...++|+. ...|+.+.|..|.. . .+...||.|.+|+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlvi-Rd~~tlq~~qlf~c-------------ldki~yieW~ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVI-RDSETLQLHQLFLC-------------LDKIVYIEWKADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEE-eccchhhHHHHHHH-------------HHHhhheeeeccceeeeeeeeccceEEEEE
Confidence 56899999999998643 1110 11001111222222 15788999998755 3 4678899999998
Q ss_pred C-CCCeeccccCCCccccccCeEEEEEeCCc-eEEEecCCe-EEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCC
Q 005559 115 I-HAELIEPNASMGKECFEENVVECVFWGNG-VVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG 191 (691)
Q Consensus 115 ~-~G~~~~~sl~~~~~~~~~~V~~~~~~~~G-~vllt~~~~-~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~ 191 (691)
+ +-+..- .+..+ +.++..++.+|+| -.+.|+..+ -..||++.......++
T Consensus 78 l~Qpew~c-kIdeg----~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~---------------------- 130 (447)
T KOG4497|consen 78 LVQPEWYC-KIDEG----QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP---------------------- 130 (447)
T ss_pred eecceeEE-EeccC----CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec----------------------
Confidence 8 444433 34444 5677777777888 444554443 1122222212111111
Q ss_pred CeEEEEEeCCeEEEEecCCcccccCCCeeEEEECCCCCEEEEEeeCC---eEEEEecCCCCceeeccCCCCCCCCeEEEe
Q 005559 192 SVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDG---RLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (691)
Q Consensus 192 ~~~vl~s~d~ti~l~d~~~~~~~~~~~i~~Ia~SpnG~~IAl~t~dg---~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC 268 (691)
-....+..++|.|+|+|.|+.+.-. .+.|.+-.-=..+.+|+.+.. .-..+.|.
T Consensus 131 ----------------------~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~-DltgieWs 187 (447)
T KOG4497|consen 131 ----------------------HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTI-DLTGIEWS 187 (447)
T ss_pred ----------------------ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcc-cccCceEC
Confidence 1122357899999999999998632 122221110123457776532 45689999
Q ss_pred cCceEEEEEcCeE----EEE--cCCCCceEeecCCCeEEeecCCc-eEEEecC
Q 005559 269 GMDSVLLYWNDML----VMV--APQAEPVQYFYDEPLVLIPECDG-VRILSNS 314 (691)
Q Consensus 269 G~davvl~~~~~l----~li--Gp~~~~v~f~~d~~~~l~~E~DG-vRIit~~ 314 (691)
-|++.+..|++-+ +.+ |-+=..+.|++-+..+.+...|| +||+..-
T Consensus 188 Pdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 188 PDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred CCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhcee
Confidence 9999999999732 222 22234788888899999999999 9997643
No 170
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.22 E-value=0.00014 Score=74.37 Aligned_cols=180 Identities=16% Similarity=0.170 Sum_probs=102.5
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCC-----CCCEEEEEecCC-------CeEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP-----GGRLIGMSWSED-------QTLIC 103 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~-----~~~Iv~~~fs~d-------e~Lv~ 103 (691)
.+++.||+|+.+|.++ ..++|++|+.-|..+..|+-... ...|.+|.|.+. .+|++
T Consensus 47 Rkl~WSpD~tlLa~a~------------S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAE------------STGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred eEEEECCCCcEEEEEc------------CCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEE
Confidence 4899999999999997 57999999999999988875431 135888888763 37889
Q ss_pred EEeCCeEEEEeC-CC---Cee---ccccCCCccccccCeEEEEEeC-CceEEEecCCeEEEEecCCCceEEEcCCCCcCC
Q 005559 104 VVQDGTVYRYNI-HA---ELI---EPNASMGKECFEENVVECVFWG-NGVVCVTEANRYFCMADFATMKVCELARPEVEE 175 (691)
Q Consensus 104 v~~DGtV~ly~~-~G---~~~---~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~ 175 (691)
+.-+|.++-|-+ .| ++. .++|..+. ..+|..+...+ ..+.++.+.... .....+=.. .
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~y---p~Gi~~~vy~p~h~LLlVgG~~~~-------~~~~s~a~~----~ 180 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHY---PHGINSAVYHPKHRLLLVGGCEQN-------QDGMSKASS----C 180 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccC---CCceeEEEEcCCCCEEEEeccCCC-------CCccccccc----c
Confidence 999998888844 12 221 12332221 13454443333 233333322210 000000001 1
Q ss_pred CCceEEEecCCcCCCCCeEEEEEeCCeEE-------EEecCC-----cccccCCCeeEEEECCCCCEEEEEeeCCeEEEE
Q 005559 176 LPHCVAVIEPKYTMTGSVEVLIGTDAGIL-------MLDEDG-----VQKVDDTLSQKMAVSPNGNFVACFTHDGRLVVN 243 (691)
Q Consensus 176 ~~~~w~vi~~~~S~d~~~~vl~s~d~ti~-------l~d~~~-----~~~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ 243 (691)
.-.+|-++. -+|.-.. +. +.+..+. ++..-. .+......|.+|++||||++||+...+|.|-+|
T Consensus 181 GLtaWRiL~--~~Pyyk~-v~-~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 181 GLTAWRILS--DSPYYKQ-VT-SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLW 256 (282)
T ss_pred CceEEEEcC--CCCcEEE-cc-ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEE
Confidence 245666652 1111111 11 1111111 111110 001235668999999999999999999999999
Q ss_pred ec
Q 005559 244 NT 245 (691)
Q Consensus 244 ss 245 (691)
.-
T Consensus 257 ~i 258 (282)
T PF15492_consen 257 EI 258 (282)
T ss_pred ec
Confidence 74
No 171
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.21 E-value=0.00014 Score=78.09 Aligned_cols=191 Identities=9% Similarity=0.052 Sum_probs=111.5
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC--Cce---eEEEEecCCCCCEEEEEecCCCeEE--EEEeCC
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA--GVL---ISETVWKNPGGRLIGMSWSEDQTLI--CVVQDG 108 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s--G~l---l~si~~~~~~~~Iv~~~fs~de~Lv--~v~~DG 108 (691)
..++++|+|..+.+... .++.|.+|+.+ |.+ +..+.+. ....++.|+|+++.+ +-..++
T Consensus 83 ~~i~~~~~g~~l~v~~~-----------~~~~v~v~~~~~~g~~~~~~~~~~~~---~~~~~~~~~p~g~~l~v~~~~~~ 148 (330)
T PRK11028 83 THISTDHQGRFLFSASY-----------NANCVSVSPLDKDGIPVAPIQIIEGL---EGCHSANIDPDNRTLWVPCLKED 148 (330)
T ss_pred eEEEECCCCCEEEEEEc-----------CCCeEEEEEECCCCCCCCceeeccCC---CcccEeEeCCCCCEEEEeeCCCC
Confidence 47888888888887752 46889999653 543 3333322 357888899998854 344569
Q ss_pred eEEEEeCC--CCeecc-----ccCCCccccccCeEEEEEeCCceEEEecC--CeEEEEecCCC--ceE---EEcCCCCcC
Q 005559 109 TVYRYNIH--AELIEP-----NASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFAT--MKV---CELARPEVE 174 (691)
Q Consensus 109 tV~ly~~~--G~~~~~-----sl~~~~~~~~~~V~~~~~~~~G~vllt~~--~~~~~v~n~~~--~~~---~~l~~~~l~ 174 (691)
+|.+|++. |.+... .... ..+...+.|+++|..+...+ .+-..+++++. ... ..+...+..
T Consensus 149 ~v~v~d~~~~g~l~~~~~~~~~~~~-----g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~ 223 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQEPAEVTTVE-----GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD 223 (330)
T ss_pred EEEEEEECCCCcccccCCCceecCC-----CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence 99999884 443210 1111 13356778899886554433 34444444431 111 122111110
Q ss_pred CCCceEEEecCCcCCCCCeEEEEEe-CCeEEEEecC--Ccc-----c-ccCCCeeEEEECCCCCEEEEEee-CCeEEEEe
Q 005559 175 ELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDED--GVQ-----K-VDDTLSQKMAVSPNGNFVACFTH-DGRLVVNN 244 (691)
Q Consensus 175 ~~~~~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~--~~~-----~-~~~~~i~~Ia~SpnG~~IAl~t~-dg~i~I~s 244 (691)
.....|.. .-.++|+|........ +++|.+|+.+ +.. . ........+++||+|++|...+. +++|.|++
T Consensus 224 ~~~~~~~~-~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 224 FSDTRWAA-DIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCCCccce-eEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 00112321 1136688886666544 6788888764 211 1 11123358999999999999886 78999997
Q ss_pred cC
Q 005559 245 TN 246 (691)
Q Consensus 245 sd 246 (691)
.|
T Consensus 303 ~~ 304 (330)
T PRK11028 303 ID 304 (330)
T ss_pred Ec
Confidence 65
No 172
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.21 E-value=0.00032 Score=78.96 Aligned_cols=156 Identities=13% Similarity=0.166 Sum_probs=95.6
Q ss_pred CCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeE-EEEE-eCCe--EEEEeCCC-Ceecc-ccCCCccccccCeEEE
Q 005559 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVV-QDGT--VYRYNIHA-ELIEP-NASMGKECFEENVVEC 138 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~-~DGt--V~ly~~~G-~~~~~-sl~~~~~~~~~~V~~~ 138 (691)
...|.+++.+|.-...+.... +.+.+..|||||+. +.++ .+|. +.+||+.+ +..+. .+. ......
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~--~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-------g~~~~~ 267 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSP--EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-------GINGAP 267 (448)
T ss_pred ceEEEEEeCCCCCceEeecCC--CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-------CCcCCe
Confidence 357888899998666666555 67889999999985 4443 3444 55668754 43221 222 112355
Q ss_pred EEeCCceEEE-e--cCC--eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeC---CeEEEEecCC
Q 005559 139 VFWGNGVVCV-T--EAN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDG 210 (691)
Q Consensus 139 ~~~~~G~vll-t--~~~--~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d---~ti~l~d~~~ 210 (691)
.++++|..++ + .++ ++|.+ +.++....++... .. ....|.|||||+.+++.+.. ..||+++.++
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~-dl~tg~~~~lt~~-----~~--~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVV-DIATKALTRITRH-----RA--IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEE-ECCCCCeEECccC-----CC--CccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 7778886443 2 223 35544 5555556666531 11 12345688999988887752 3688888764
Q ss_pred cc--cc--cCCCeeEEEECCCCCEEEEEeeC
Q 005559 211 VQ--KV--DDTLSQKMAVSPNGNFVACFTHD 237 (691)
Q Consensus 211 ~~--~~--~~~~i~~Ia~SpnG~~IAl~t~d 237 (691)
.. .+ ........++||||++|++.+.+
T Consensus 340 g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 340 GKVSRLTFEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred CCEEEEecCCCCCcCeeECCCCCEEEEEEec
Confidence 43 22 12223457999999999998764
No 173
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.21 E-value=4.6e-05 Score=82.19 Aligned_cols=196 Identities=13% Similarity=0.149 Sum_probs=129.6
Q ss_pred CCCeEEEEcCCCceeEE-EEecCCCCCEEEEEecC-CCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccC-eEEEEE
Q 005559 64 ALRKLRIFNSAGVLISE-TVWKNPGGRLIGMSWSE-DQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEEN-VVECVF 140 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~s-i~~~~~~~~Iv~~~fs~-de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~-V~~~~~ 140 (691)
..+.|+||+..-+++.. ++.|+ ..|.+|.++- ||.+..|+..|-+.+-+..-+...++|+.+ .+. |.-.++
T Consensus 99 ~~~~Vkiwdl~~kl~hr~lkdh~--stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~----sgqsvRll~y 172 (673)
T KOG4378|consen 99 QSGCVKIWDLRAKLIHRFLKDHQ--STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID----SGQSVRLLRY 172 (673)
T ss_pred cCceeeehhhHHHHHhhhccCCc--ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC----CCCeEEEeec
Confidence 57899999998887665 55666 7899999876 566889999999999988655555566654 233 446677
Q ss_pred eCCc--eEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCC-CeEEEEEeCCeEEEEecCCcc----c
Q 005559 141 WGNG--VVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG-SVEVLIGTDAGILMLDEDGVQ----K 213 (691)
Q Consensus 141 ~~~G--~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~-~~~vl~s~d~ti~l~d~~~~~----~ 213 (691)
++.- +....++...+.+|++.+..++--.. ..+...|-.| .|||.+ ..+|.+++|..|+++|..... -
T Consensus 173 s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--~~HsAP~~gi---cfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 173 SPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--EAHSAPCRGI---CFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred ccccceeeEeeccCCeEEEEeccCCCcccchh--hhccCCcCcc---eecCCccceEEEecccceEEEeeccccccccee
Confidence 6633 33333445688889987665432211 1122122222 255655 467888999999999988554 2
Q ss_pred ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC-CCCceeeccCCCCCCCCeEEEecCc
Q 005559 214 VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSPVIDESCESALPPEQIAWCGMD 271 (691)
Q Consensus 214 ~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd-~~~~l~e~d~~~~~~p~q~~WCG~d 271 (691)
.-..|+..++|+|||-+||.++..|+|..++-- ....+.-...+ +.....++|--.-
T Consensus 248 ~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah-~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH-DASVTRVAFQPSP 305 (673)
T ss_pred eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec-ccceeEEEeeecc
Confidence 466899999999999999999999999876532 12222222222 1235566776554
No 174
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.20 E-value=0.00024 Score=79.39 Aligned_cols=163 Identities=13% Similarity=0.189 Sum_probs=99.9
Q ss_pred CeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeC-C--eEEEEeCC-CCeeccccCCCccccccCeEEEEE
Q 005559 66 RKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQD-G--TVYRYNIH-AELIEPNASMGKECFEENVVECVF 140 (691)
Q Consensus 66 ~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~D-G--tV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~ 140 (691)
..|.+++.+|.....+.-+. +.+....|||||+ |+.++.+ | .+.+|++. |+..+ +... ...+....+
T Consensus 179 ~~l~~~d~~g~~~~~l~~~~--~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~----~g~~~~~~~ 250 (430)
T PRK00178 179 YTLQRSDYDGARAVTLLQSR--EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNF----EGLNGAPAW 250 (430)
T ss_pred eEEEEECCCCCCceEEecCC--CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCC----CCCcCCeEE
Confidence 36888899998777766554 6789999999987 5555433 3 47777886 44333 2111 122345677
Q ss_pred eCCceEEE-ec--CC--eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeC---CeEEEEecCCcc
Q 005559 141 WGNGVVCV-TE--AN--RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDGVQ 212 (691)
Q Consensus 141 ~~~G~vll-t~--~~--~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d---~ti~l~d~~~~~ 212 (691)
+++|--++ +. ++ ++|.+ +.++....++..... ....|.|||||+.+++.+.. ..||.++..+..
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~-d~~~~~~~~lt~~~~-------~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVM-DLASRQLSRVTNHPA-------IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEE-ECCCCCeEEcccCCC-------CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 88885433 32 22 35544 555555566653111 12345688999988887752 369999876443
Q ss_pred --cc--cCCCeeEEEECCCCCEEEEEeeC-C--eEEEEe
Q 005559 213 --KV--DDTLSQKMAVSPNGNFVACFTHD-G--RLVVNN 244 (691)
Q Consensus 213 --~~--~~~~i~~Ia~SpnG~~IAl~t~d-g--~i~I~s 244 (691)
.. ........++||||+.||+.+.. | .|++++
T Consensus 323 ~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~d 361 (430)
T PRK00178 323 AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQD 361 (430)
T ss_pred EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEE
Confidence 22 12223457899999999998754 3 344444
No 175
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.20 E-value=3.1e-05 Score=79.92 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=73.3
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCC-eE-EEEEeCCeEEEEeCCCC-eeccccCCCccccccCeEEEE
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQ-TL-ICVVQDGTVYRYNIHAE-LIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de-~L-v~v~~DGtV~ly~~~G~-~~~~sl~~~~~~~~~~V~~~~ 139 (691)
..+.|+|.+. +|+....+..|. +.|-.+.|-|+. +| ++++.|-+||+||++-. .+. -|++ .|+-.+.|..+-
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG--~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~-VfGG-~egHrdeVLSvD 188 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHG--GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVA-VFGG-VEGHRDEVLSVD 188 (385)
T ss_pred ceeEEEEEecchhhhccceeccC--ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEE-Eecc-cccccCcEEEEE
Confidence 6899999996 789999999998 889999999975 55 68999999999999754 343 4442 233367899999
Q ss_pred EeCCceEEEecCC-eEEEEecCC
Q 005559 140 FWGNGVVCVTEAN-RYFCMADFA 161 (691)
Q Consensus 140 ~~~~G~vllt~~~-~~~~v~n~~ 161 (691)
|..+|--+++... +-..+|.+.
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred EcCCCCeeeccCCcceEEEEecC
Confidence 9999999988774 445555554
No 176
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.16 E-value=0.00015 Score=74.28 Aligned_cols=187 Identities=11% Similarity=0.052 Sum_probs=123.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCC---eEEEEEeCCeE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQ---TLICVVQDGTV 110 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de---~Lv~v~~DGtV 110 (691)
...-|+.+-+|..+++.. .|+.+++|+..-....++.-|. +.|..+.|-+.. .|++.+-|.|+
T Consensus 74 PvL~v~WsddgskVf~g~------------~Dk~~k~wDL~S~Q~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDKTl 139 (347)
T KOG0647|consen 74 PVLDVCWSDDGSKVFSGG------------CDKQAKLWDLASGQVSQVAAHD--APVKTCHWVPGMNYQCLVTGSWDKTL 139 (347)
T ss_pred CeEEEEEccCCceEEeec------------cCCceEEEEccCCCeeeeeecc--cceeEEEEecCCCcceeEecccccce
Confidence 335677777887777764 7999999998666788999998 899999998643 46899999999
Q ss_pred EEEeCCCCeeccccCCCcc-------------------------------------ccccCeEEEEEeC--CceEEEecC
Q 005559 111 YRYNIHAELIEPNASMGKE-------------------------------------CFEENVVECVFWG--NGVVCVTEA 151 (691)
Q Consensus 111 ~ly~~~G~~~~~sl~~~~~-------------------------------------~~~~~V~~~~~~~--~G~vllt~~ 151 (691)
|.||+.....-.++.+... ...-.+..+.++. +|.++-.-.
T Consensus 140 KfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 140 KFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred eecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 9999863221112221100 0112233444442 555555555
Q ss_pred CeEEEEecCCCc------eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCee
Q 005559 152 NRYFCMADFATM------KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQ 220 (691)
Q Consensus 152 ~~~~~v~n~~~~------~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~ 220 (691)
|++. +.+++.+ ..+.-...+. ......+|-+..|.|--++.++++.||++-.||.+... +.+..||+
T Consensus 220 Grv~-iq~id~~~~~~nFtFkCHR~~~~-~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpIt 297 (347)
T KOG0647|consen 220 GRVA-IQYIDDPNPKDNFTFKCHRSTNS-VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPIT 297 (347)
T ss_pred ceEE-EEecCCCCccCceeEEEeccCCC-CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccc
Confidence 5422 2222222 1111111000 11346677666788889999999999999999999665 45789999
Q ss_pred EEEECCCCCEEEEEee
Q 005559 221 KMAVSPNGNFVACFTH 236 (691)
Q Consensus 221 ~Ia~SpnG~~IAl~t~ 236 (691)
.-+|+-||++.|.+..
T Consensus 298 cc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 298 CCSFNRNGSIFAYALG 313 (347)
T ss_pred eeEecCCCCEEEEEee
Confidence 9999999999998753
No 177
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.14 E-value=0.00074 Score=66.46 Aligned_cols=188 Identities=15% Similarity=0.201 Sum_probs=123.2
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-------CCceeEEEEecCCCCCEEEEEecCC----CeEE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-------AGVLISETVWKNPGGRLIGMSWSED----QTLI 102 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-------sG~ll~si~~~~~~~~Iv~~~fs~d----e~Lv 102 (691)
+.+.++-||+|.+||+.+ .+++|++.-- .|.-+ .+..|. |.|.+|+|-.+ +.++
T Consensus 91 siyc~~ws~~geliatgs------------ndk~ik~l~fn~dt~~~~g~dl-e~nmhd--gtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGS------------NDKTIKVLPFNADTCNATGHDL-EFNMHD--GTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred cEEEEEecCccCeEEecC------------CCceEEEEecccccccccCcce-eeeecC--CceeeeEEecCCCcCceEE
Confidence 457899999999999986 4666766432 23333 456677 89999999764 3455
Q ss_pred EEEeCCeEEEEeC---CCCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCc-eEEEcCCCCcCCC-
Q 005559 103 CVVQDGTVYRYNI---HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATM-KVCELARPEVEEL- 176 (691)
Q Consensus 103 ~v~~DGtV~ly~~---~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~-~~~~l~~~~l~~~- 176 (691)
.-..-|-.++|-. .|+-.+ -++.+ .+-|...--| +|-++++++ .+.+.+|++.-+ -+..+.+-.-.+.
T Consensus 156 ~s~gagdc~iy~tdc~~g~~~~-a~sgh----tghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRGQGFH-ALSGH----TGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL 229 (350)
T ss_pred EecCCCcceEEEeecCCCCcce-eecCC----cccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence 5555666788844 354444 55555 4557765555 455666666 456677776532 2333322111011
Q ss_pred -CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 177 -PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 177 -~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
.+..+.+ ...|+|...+..-.|..-.+.|..|.. -.|...|..+.|||...++.+.+.|.+|++-.
T Consensus 230 essavaav--~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 230 ESSAVAAV--AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred ccceeEEE--EECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEee
Confidence 1222211 234789988888888888888888765 35677899999999999999999999998753
No 178
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.13 E-value=3.2e-05 Score=84.03 Aligned_cols=140 Identities=13% Similarity=0.133 Sum_probs=95.4
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHhCCChhHHHHHHHHH---HhhhcCCCChHHHHHH-H--------HHHhccCCCCCHH
Q 005559 440 ASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACS---KITASLAIPDVTLLEI-L--------LDKLKLCKGISYA 507 (691)
Q Consensus 440 ~~~li~rL~~r~~~~lA~~I~~~l~~~~~~Vl~hWA~~---kI~~~~~~~D~~l~~~-I--------~~kl~~~~~is~a 507 (691)
..+++-+....+++.-|+|+|.+.+-.+ -|||- -+ ...+|.-.|++-+ + .+-++..+ -+=.
T Consensus 576 y~~iL~e~~sssKWeqavRLCrfv~eqT-----MWAtlAa~Av-~~~~m~~~EiAYaA~~~idKVsyin~iK~lt-ske~ 648 (737)
T KOG1524|consen 576 YPEILHEYLSSSKWEQAVRLCRFVQEQT-----MWATLAAVAV-RKHQMQISEIAYAAALQIDKVSYINHIKALT-SKEE 648 (737)
T ss_pred cHHHHHHHhccchHHHHHHHHHhccchH-----HHHHHHHHHH-hhccccHHHHHHHHhhchhhHHHHHHHhccC-cHHH
Confidence 3566677788999999999999998763 37764 11 1122222222211 1 12222333 4456
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCCCCcCcccccccCCchHHHHHHHHHcCCchHHHHHHHHHHhhCChhhHHHHHhcChhh
Q 005559 508 AVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLA 587 (691)
Q Consensus 508 ~IA~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl~~~~~~~AL~kA~~S~D~dLi~~vll~l~~~~~~~~f~~~l~~~~~a 587 (691)
..|+...-.||..=|..+|++-....+-|.+=+.|-.|++||+-+.+-. +++-.||-+ ++ .|++.+.+ ...
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~RALEl~~K~K--~~v~~Vl~y-R~-----KyLk~~g~-~Et 719 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILLHGGLIEQAVGLNIRMHNWRRALELSQKHK--ELVPRVLQY-RR-----KYLKALGR-EET 719 (737)
T ss_pred HHHHHHHHhccchhhhHHHHhcchHHHhhhhhhhhhhHHHHHHHHHhHH--HHHHHHHHH-HH-----HHHHHhcc-ccc
Confidence 6788888899999999999999999999999999999999999999877 777776644 22 25555544 444
Q ss_pred HHHHHHHH
Q 005559 588 CDLFTVYA 595 (691)
Q Consensus 588 ~~l~~~y~ 595 (691)
..+|..|.
T Consensus 720 dplyL~~~ 727 (737)
T KOG1524|consen 720 DPLYLPLV 727 (737)
T ss_pred Cchhhhhh
Confidence 45555555
No 179
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=0.00027 Score=73.97 Aligned_cols=187 Identities=17% Similarity=0.154 Sum_probs=121.8
Q ss_pred CCCCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe--EEEE
Q 005559 27 RWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT--LICV 104 (691)
Q Consensus 27 ~w~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~--Lv~v 104 (691)
.|.++|+. .+|-.++ .||.+. ...|.+|+||+.+-+.-..++-... .+|.+|+|-|.+. |+++
T Consensus 95 ~ws~~dlr--~~aWhqH--~~~fav----------a~nddvVriy~ksst~pt~Lks~sQ-rnvtclawRPlsaselavg 159 (445)
T KOG2139|consen 95 LWSEIDLR--GVAWHQH--IIAFAV----------ATNDDVVRIYDKSSTCPTKLKSVSQ-RNVTCLAWRPLSASELAVG 159 (445)
T ss_pred hhhhccee--eEeechh--hhhhhh----------hccCcEEEEeccCCCCCceecchhh-cceeEEEeccCCcceeeee
Confidence 36555554 6677775 444332 0268999999998877777776543 5799999999644 6677
Q ss_pred EeCCeEEEEeC--CCCeeccccCCC---cc----ccccCeEEEEEeCCceEEEecCC--eEEEEecCCCceEEEcCCCCc
Q 005559 105 VQDGTVYRYNI--HAELIEPNASMG---KE----CFEENVVECVFWGNGVVCVTEAN--RYFCMADFATMKVCELARPEV 173 (691)
Q Consensus 105 ~~DGtV~ly~~--~G~~~~~sl~~~---~~----~~~~~V~~~~~~~~G~vllt~~~--~~~~v~n~~~~~~~~l~~~~l 173 (691)
-..| +-+|.. .++..+..-.+. .+ .-...|...+-.++|..++|++. .-+.+|+.+......|.. .
T Consensus 160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--~ 236 (445)
T KOG2139|consen 160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--K 236 (445)
T ss_pred ecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--c
Confidence 7777 788944 344333100100 00 01344666554569999999884 356678877544444431 1
Q ss_pred CCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEe
Q 005559 174 EELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFT 235 (691)
Q Consensus 174 ~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t 235 (691)
+ +...+.+ .|||||..+..+..|.+..+|+.+..- ....|.++.-.+||+|++|-+..
T Consensus 237 -g-lgg~slL--kwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 237 -G-LGGFSLL--KWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred -C-CCceeeE--EEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE
Confidence 1 2222333 589999999999999999999766332 45677999999999999887654
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.12 E-value=8.1e-05 Score=76.73 Aligned_cols=263 Identities=17% Similarity=0.234 Sum_probs=155.5
Q ss_pred CEEEEEecCCCe-EEEEEeCCeEEEEeCCCCeecc------ccCCCcc--c-cccCeEEEEEe-------C-CceEEEec
Q 005559 89 RLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEP------NASMGKE--C-FEENVVECVFW-------G-NGVVCVTE 150 (691)
Q Consensus 89 ~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~~~~------sl~~~~~--~-~~~~V~~~~~~-------~-~G~vllt~ 150 (691)
-..+..|||||. +++.+.|.+.++|++.-++... .++++.+ . +-..|.++..+ | +-++++++
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 477888999988 6789999999999885332110 1111100 0 12335554433 2 44555555
Q ss_pred CCeEEEEecCCCceEE-EcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecC--Ccc-----------cccC
Q 005559 151 ANRYFCMADFATMKVC-ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ-----------KVDD 216 (691)
Q Consensus 151 ~~~~~~v~n~~~~~~~-~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~--~~~-----------~~~~ 216 (691)
..+=+.+||.-...++ .+.. ..+.-...+.++..|||||.. ++++...+|.++|.. |+. ....
T Consensus 131 r~~PIh~wdaftG~lraSy~~--ydh~de~taAhsL~Fs~DGeq-lfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRA--YDHQDEYTAAHSLQFSPDGEQ-LFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccCceeeeeccccccccchhh--hhhHHhhhhheeEEecCCCCe-EeecccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 4444445554332222 1111 111122233444479999985 677888999999984 332 1234
Q ss_pred CCeeEEEECCCCC-EEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEe--cC--------ceEEEEEcC-----e
Q 005559 217 TLSQKMAVSPNGN-FVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC--GM--------DSVLLYWND-----M 280 (691)
Q Consensus 217 ~~i~~Ia~SpnG~-~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC--G~--------davvl~~~~-----~ 280 (691)
|-+..++|||-.. .+|.++.-.++=|+..+-.+.+.-.-.+ ..-..++.|| || |.-++-|+- .
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 5678899999764 8999988888888887755554322233 5678899999 32 455667862 2
Q ss_pred -EEEEcC---CCCceEeecC--CCeEEeecCCc-eEEEecCc-ceeeeccchhhhhhcccCCCChh-hHHHHHHHHHhcc
Q 005559 281 -LVMVAP---QAEPVQYFYD--EPLVLIPECDG-VRILSNSS-MEFLQRVPASTEQIFAIGSTSPA-ALLYDALDHFDRR 351 (691)
Q Consensus 281 -l~liGp---~~~~v~f~~d--~~~~l~~E~DG-vRIit~~~-~efL~~Vp~~~~~If~igS~~Pg-a~L~~A~~~~~~~ 351 (691)
..|.++ .++.|.|..+ +.......-|| ||+|..+. .+-.+..|.+..-+-.+. -+|. -||..++-++.=.
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs-lnP~mpilatssGqr~f~ 365 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS-LNPIMPILATSSGQRIFK 365 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccccee-cCcccceeeeccCceeec
Confidence 234444 4457888765 45666666899 99999887 554444444433333332 3443 5666777655555
Q ss_pred CchhH
Q 005559 352 SAKAD 356 (691)
Q Consensus 352 ~~~a~ 356 (691)
.|++|
T Consensus 366 ~~~dD 370 (406)
T KOG2919|consen 366 YPKDD 370 (406)
T ss_pred CCCcc
Confidence 55554
No 181
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00026 Score=72.74 Aligned_cols=203 Identities=14% Similarity=0.133 Sum_probs=116.2
Q ss_pred CCCCCEEEEcC--CCCeEEEEecCchhhhhhcccCCCeEEEEcC-------CC---ceeEEEEecCCCCCEEEEEecCC-
Q 005559 32 DLSRNKVACAP--FGGPIAVIRDDSKIVQLYAESALRKLRIFNS-------AG---VLISETVWKNPGGRLIGMSWSED- 98 (691)
Q Consensus 32 ~l~~~~vA~sp--~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-------sG---~ll~si~~~~~~~~Iv~~~fs~d- 98 (691)
+=+.++|+-++ ||+.+|+.+ .|+++.||-- .| .+..++.-.. +.|.++.|.|-
T Consensus 59 ~~Si~rV~WAhPEfGqvvA~cS------------~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr--ssV~DV~FaP~h 124 (361)
T KOG2445|consen 59 DGSIWRVVWAHPEFGQVVATCS------------YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR--SSVTDVKFAPKH 124 (361)
T ss_pred CCcEEEEEecCccccceEEEEe------------cCCceeeeeecccccccccceeEEEEEeecCC--cceeEEEecchh
Confidence 33455555554 999999996 7999999975 23 2344455444 78999999995
Q ss_pred --CeEEEEEeCCeEEEEeCC--CCeeccccCCCcc------ccccCeEEEEEeC-----CceEEEecCC------eEEEE
Q 005559 99 --QTLICVVQDGTVYRYNIH--AELIEPNASMGKE------CFEENVVECVFWG-----NGVVCVTEAN------RYFCM 157 (691)
Q Consensus 99 --e~Lv~v~~DGtV~ly~~~--G~~~~~sl~~~~~------~~~~~V~~~~~~~-----~G~vllt~~~------~~~~v 157 (691)
-.|++++.||++|||... +++.+-++.+.-. .....-..|.-|. .-.+.+..+. +.+..
T Consensus 125 lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iy 204 (361)
T KOG2445|consen 125 LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIY 204 (361)
T ss_pred cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEE
Confidence 346899999999999552 3443323322100 0011122333343 1222222222 33333
Q ss_pred ecCCCc-eEEEcCCCC-cCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----------------------
Q 005559 158 ADFATM-KVCELARPE-VEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----------------------- 212 (691)
Q Consensus 158 ~n~~~~-~~~~l~~~~-l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----------------------- 212 (691)
...+.. +...+...+ .+...+..+..| +.--+-.++++++.|| |.+|......
T Consensus 205 e~~e~~rKw~kva~L~d~~dpI~di~wAP-n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs 282 (361)
T KOG2445|consen 205 EYNENGRKWLKVAELPDHTDPIRDISWAP-NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVS 282 (361)
T ss_pred EecCCcceeeeehhcCCCCCcceeeeecc-ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEee
Confidence 333333 332332211 111122222211 1111123555666677 8887766210
Q ss_pred --cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCc
Q 005559 213 --KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP 250 (691)
Q Consensus 213 --~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~ 250 (691)
..|++++.+|.+.-.|..|++.+.||.+++|.+.|.+.
T Consensus 283 ~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~ 322 (361)
T KOG2445|consen 283 ELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNL 322 (361)
T ss_pred eccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhh
Confidence 25788999999999999999999999999998876543
No 182
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.046 Score=63.46 Aligned_cols=346 Identities=12% Similarity=0.126 Sum_probs=189.6
Q ss_pred cccccccEEEecccccccCCCCcCCCC-CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCC
Q 005559 9 EWQLVYNRYYRKPELYQMRWKHIDLSR-NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPG 87 (691)
Q Consensus 9 ~W~~l~~~~yr~~~~y~~~w~~~~l~~-~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~ 87 (691)
+|.+. .||..+++-+ .-++.. -+-.+++.||.||+.. .++.|-+++++=+++..+..++
T Consensus 5 qWrrF--~lFq~~~i~~----~~~~~G~~isc~~s~~~~vvigt------------~~G~V~~Ln~s~~~~~~fqa~~-- 64 (933)
T KOG2114|consen 5 QWRRF--SLFQWKEIPS----LENFVGNAISCCSSSTGSVVIGT------------ADGRVVILNSSFQLIRGFQAYE-- 64 (933)
T ss_pred hccee--eeeeeeecCC----cccCCCCceeEEcCCCceEEEee------------ccccEEEecccceeeehheecc--
Confidence 45533 3455444443 123433 5678899999999885 7899999999999989999887
Q ss_pred CCEEEEEecCCCe--EEEEEeCCe-----EEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecC
Q 005559 88 GRLIGMSWSEDQT--LICVVQDGT-----VYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADF 160 (691)
Q Consensus 88 ~~Iv~~~fs~de~--Lv~v~~DGt-----V~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~ 160 (691)
..|+.+=|..+++ |++|.+|+. +++|++.- ... +-+++ -+.+.
T Consensus 65 ~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek-~~~-n~sP~------c~~~~---------------------- 114 (933)
T KOG2114|consen 65 QSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK-VDK-NNSPQ------CLYEH---------------------- 114 (933)
T ss_pred hhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc-cCC-CCCcc------eeeee----------------------
Confidence 4477777877763 677777764 78887741 001 10000 01111
Q ss_pred CCceEEEcCCCCcCCCC-ceEEEecCCcCCCCCeEEEEEeCCeEEEEecC-----Ccc----cccCCCeeEEEECCCCCE
Q 005559 161 ATMKVCELARPEVEELP-HCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-----GVQ----KVDDTLSQKMAVSPNGNF 230 (691)
Q Consensus 161 ~~~~~~~l~~~~l~~~~-~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~-----~~~----~~~~~~i~~Ia~SpnG~~ 230 (691)
+...+++|.- ..| ++.+| |.+-+++|..-.||.|++..-| |.. ....+||+.+++--+|+.
T Consensus 115 ---ri~~~~np~~-~~p~s~l~V-----s~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 115 ---RIFTIKNPTN-PSPASSLAV-----SEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred ---eeeccCCCCC-CCcceEEEE-----EccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 1111222211 123 34444 2456677777778888887655 111 245689999999999988
Q ss_pred EEEEeeCCeEEEEecCCCCc--eeeccCCCCCCCCeEEEe---cCceEEEEEcCeEEEEcCCCCceEeecC-CCeE--Ee
Q 005559 231 VACFTHDGRLVVNNTNFSSP--VIDESCESALPPEQIAWC---GMDSVLLYWNDMLVMVAPQAEPVQYFYD-EPLV--LI 302 (691)
Q Consensus 231 IAl~t~dg~i~I~ssd~~~~--l~e~d~~~~~~p~q~~WC---G~davvl~~~~~l~liGp~~~~v~f~~d-~~~~--l~ 302 (691)
+.+......+.+++.. ++. +...|.+- ..--.|. |....+|.-.+.+.++.+.+....|.|+ +.-. ++
T Consensus 186 ~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G---~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLS-GRTPSLKVLDNNG---ISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred eEEEEecceeEEEEec-CCCcceeeeccCC---ccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 6555555666665544 222 22233220 0011121 2223455556677788888887777777 5433 33
Q ss_pred ecCCceEEEecCcceeeecc-chhhhhhcccCCCChhhHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHHHHHHcccCC
Q 005559 303 PECDGVRILSNSSMEFLQRV-PASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEF 381 (691)
Q Consensus 303 ~E~DGvRIit~~~~efL~~V-p~~~~~If~igS~~Pga~L~~A~~~~~~~~~~a~e~lr~i~~~L~~AV~~CI~AA~~e~ 381 (691)
...+-+-++|++.+---+.. |.+...||.+-...--++++. -+-+++-+-+-+-+
T Consensus 262 ~~~g~~L~v~~~~~~~~~s~s~ss~~~i~~~~d~~n~~v~ys---------------------~vl~~l~d~l~~w~--- 317 (933)
T KOG2114|consen 262 FSFGLLLCVTTDKGTENTSLSNSSSNRIFKAYDLRNRYVLYS---------------------SVLEDLSDNLIEWS--- 317 (933)
T ss_pred EecCEEEEEEccCCCCCcccCccchhheeehhhhcCcccchH---------------------HhHHHHHHHHHhcC---
Confidence 33334667776643332221 112222333221111111111 11122211111111
Q ss_pred CHHHHHHHHHHHhhhchhhcCCChHHHHHHHhHhhhhhccCCCCCccccCHHHHhcCChHHHHHHHHHcCCHHHHHHHHH
Q 005559 382 DISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISE 461 (691)
Q Consensus 382 d~~~Qk~LL~AAsfGk~~~~~~~~~~fv~~c~~LRVLN~lr~~~igi~lT~~Q~~~l~~~~li~rL~~r~~~~lA~~I~~ 461 (691)
|+--++. + =|.+ -++...+.+.-++.|+.-++|.+|+.+|+
T Consensus 318 -------------~~~~vlt---------------------s--dg~~---~~L~ek~le~kL~iL~kK~ly~~Ai~LAk 358 (933)
T KOG2114|consen 318 -------------FDCLVLT---------------------S--DGVV---HELIEKDLETKLDILFKKNLYKVAINLAK 358 (933)
T ss_pred -------------CcEEEEe---------------------c--CCce---eeeeeccHHHHHHHHHHhhhHHHHHHHHH
Confidence 2221111 0 0110 13455678899999999999999999999
Q ss_pred HhCCChh---HHHHHHHHHHhh
Q 005559 462 YLGMNQE---VVIMHWACSKIT 480 (691)
Q Consensus 462 ~l~~~~~---~Vl~hWA~~kI~ 480 (691)
..+++.+ .|....|-+--+
T Consensus 359 ~~~~d~d~~~~i~~kYgd~Ly~ 380 (933)
T KOG2114|consen 359 SQHLDEDTLAEIHRKYGDYLYG 380 (933)
T ss_pred hcCCCHHHHHHHHHHHHHHHHh
Confidence 9999964 577777776543
No 183
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.08 E-value=6.2e-05 Score=85.14 Aligned_cols=179 Identities=12% Similarity=0.154 Sum_probs=115.0
Q ss_pred EEEEEecC-CCeE-EEEEeCCeEEEEeCCC---CeeccccCCCccccccCeEEEEEeC-CceEEEecCCe-EEEEecCCC
Q 005559 90 LIGMSWSE-DQTL-ICVVQDGTVYRYNIHA---ELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANR-YFCMADFAT 162 (691)
Q Consensus 90 Iv~~~fs~-de~L-v~v~~DGtV~ly~~~G---~~~~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~~~-~~~v~n~~~ 162 (691)
.-++.|.. +++| ++.+.+|.|.+||+.- +.+-+.|..| +..|..+-|.. .--++++++++ ++..|++..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH----~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~ 165 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEH----ERSANKLDFHSTEPNILISGSQDGTVKCWDLRS 165 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhh----ccceeeeeeccCCccEEEecCCCceEEEEeeec
Confidence 44556764 4565 5899999999999853 2222256666 56688888876 56777887754 788888653
Q ss_pred ceEEEcCCCCcCCCCceEEEecCCcCCCCC-eEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEe
Q 005559 163 MKVCELARPEVEELPHCVAVIEPKYTMTGS-VEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFT 235 (691)
Q Consensus 163 ~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~-~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t 235 (691)
..-.... ....-+.-.| .|||.-. ..+.+..+|.+.+||..--. ..|.|||..+.++||+.+||+++
T Consensus 166 ~~S~~t~---~~nSESiRDV---~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG 239 (839)
T KOG0269|consen 166 KKSKSTF---RSNSESIRDV---KFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG 239 (839)
T ss_pred ccccccc---cccchhhhce---eeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC
Confidence 3211110 0011122233 5666544 44555557889999988432 46999999999999999999999
Q ss_pred eCCeEEEEecCCCCceeeccCCCCCCCCeEEE----------e--cCceEEEEEc
Q 005559 236 HDGRLVVNNTNFSSPVIDESCESALPPEQIAW----------C--GMDSVLLYWN 278 (691)
Q Consensus 236 ~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~W----------C--G~davvl~~~ 278 (691)
.|++++||..+-.+.-.....+.-.+..-+.| | ++|+-|-.|+
T Consensus 240 RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 99999999865333322222222224445555 4 5677676675
No 184
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=0.0011 Score=73.44 Aligned_cols=251 Identities=16% Similarity=0.243 Sum_probs=143.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeE--EEEEeCCeEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL--ICVVQDGTVYR 112 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~L--v~v~~DGtV~l 112 (691)
..+++.|-|..+|..+ .+++++||-- .|.-+.++..+. .|.++.|+|...+ +.|.-.+++.+
T Consensus 404 r~iSvdp~G~wlasGs------------dDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~~~~~i 468 (733)
T KOG0650|consen 404 RSISVDPSGEWLASGS------------DDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVGECVLI 468 (733)
T ss_pred EEEEecCCcceeeecC------------CCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEecCceEE
Confidence 3677888899998876 5899999995 799999999874 8999999998775 45566666777
Q ss_pred EeC-CCCeec-----cccCCC-ccccccCeEEEEEe----------------------------CCceEEEe--c--CCe
Q 005559 113 YNI-HAELIE-----PNASMG-KECFEENVVECVFW----------------------------GNGVVCVT--E--ANR 153 (691)
Q Consensus 113 y~~-~G~~~~-----~sl~~~-~~~~~~~V~~~~~~----------------------------~~G~vllt--~--~~~ 153 (691)
-|. +|+.+. -.|... ++ ......+..| ..|=-+.| . ..+
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~--~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNE--SEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCc--cCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 765 774221 011111 11 1111122233 23322222 1 112
Q ss_pred EEEEecCCCceEEEcCCCCcC-CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc---c--ccCCCeeEEEECCC
Q 005559 154 YFCMADFATMKVCELARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---K--VDDTLSQKMAVSPN 227 (691)
Q Consensus 154 ~~~v~n~~~~~~~~l~~~~l~-~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~---~--~~~~~i~~Ia~Spn 227 (691)
-+.|..+...+ ...+.. ......++ .|.|... ..++++...|.+.|...+. . .....+..|+++|+
T Consensus 547 ~VliHQLSK~~----sQ~PF~kskG~vq~v---~FHPs~p-~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 547 SVLIHQLSKRK----SQSPFRKSKGLVQRV---KFHPSKP-YLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN 618 (733)
T ss_pred eEEEEeccccc----ccCchhhcCCceeEE---EecCCCc-eEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCC
Confidence 22222221111 111121 22233333 3555444 4566666778888877544 2 23345789999999
Q ss_pred CCEEEEEeeCCeEEEEecCCCCc-eeeccCCCCCCCC---------eEEEecCceEEEEEc-----Ce-----E----EE
Q 005559 228 GNFVACFTHDGRLVVNNTNFSSP-VIDESCESALPPE---------QIAWCGMDSVLLYWN-----DM-----L----VM 283 (691)
Q Consensus 228 G~~IAl~t~dg~i~I~ssd~~~~-l~e~d~~~~~~p~---------q~~WCG~davvl~~~-----~~-----l----~l 283 (691)
|..|.+++.++++....-|++.. +.....+.. ... =|+=|.+|+.|..+. |. + .|
T Consensus 619 GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~-avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcchhHHhhhhhh-hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 99999999999987777777644 211111110 111 233345656655443 22 1 34
Q ss_pred EcCCCC------ceEeecCCCeEEeecCCc-eEEEe
Q 005559 284 VAPQAE------PVQYFYDEPLVLIPECDG-VRILS 312 (691)
Q Consensus 284 iGp~~~------~v~f~~d~~~~l~~E~DG-vRIit 312 (691)
-||... .+.|-+..+-++.+--|| ||+||
T Consensus 698 ~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 455432 345777778888888998 99987
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.05 E-value=0.00034 Score=71.31 Aligned_cols=269 Identities=19% Similarity=0.295 Sum_probs=148.7
Q ss_pred cccccCCCCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEc---CCCceeEEEEecCCCCCEEEEEecCC
Q 005559 22 ELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN---SAGVLISETVWKNPGGRLIGMSWSED 98 (691)
Q Consensus 22 ~~y~~~w~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys---~sG~ll~si~~~~~~~~Iv~~~fs~d 98 (691)
.+|.|.|....-..+.+|+..+ +- ...+.|+|-. -+|+++..-.++.+ =++..+.|.|+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~---~E--------------e~~Nkvqiv~ld~~s~e~~~~a~fd~~-YP~tK~~wiPd 107 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSF---IE--------------EYNNKVQIVQLDEDSGELVEDANFDHP-YPVTKLMWIPD 107 (364)
T ss_pred ceeeeccccCCCcceeEEEeee---cc--------------ccCCeeEEEEEccCCCceeccCCCCCC-CCccceEecCC
Confidence 4566778433334555655442 11 1334444443 46777766555542 37899999998
Q ss_pred Ce-E---EEEEeCCeEEEEeCC---CCee-ccccCCCcccc-ccCeEEEEEeC--CceEEEecC-CeEEEEecCCCc---
Q 005559 99 QT-L---ICVVQDGTVYRYNIH---AELI-EPNASMGKECF-EENVVECVFWG--NGVVCVTEA-NRYFCMADFATM--- 163 (691)
Q Consensus 99 e~-L---v~v~~DGtV~ly~~~---G~~~-~~sl~~~~~~~-~~~V~~~~~~~--~G~vllt~~-~~~~~v~n~~~~--- 163 (691)
.+ . +.++.+-..|+|... ++.. +-.+......+ -..+...- |. +--.+.|++ ...-.||+++..
T Consensus 108 ~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFD-Wne~dp~~igtSSiDTTCTiWdie~~~~~ 186 (364)
T KOG0290|consen 108 SKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFD-WNEVDPNLIGTSSIDTTCTIWDIETGVSG 186 (364)
T ss_pred ccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccc-cccCCcceeEeecccCeEEEEEEeecccc
Confidence 64 2 466667779999664 2221 11222111000 01111111 32 333444444 234455665532
Q ss_pred --eEEEcCCCCcCCCCceEEEecCCcCCCCC--eEEEEEeCCeEEEEecCCcc--------cccCCCeeEEEECCCC-CE
Q 005559 164 --KVCELARPEVEELPHCVAVIEPKYTMTGS--VEVLIGTDAGILMLDEDGVQ--------KVDDTLSQKMAVSPNG-NF 230 (691)
Q Consensus 164 --~~~~l~~~~l~~~~~~w~vi~~~~S~d~~--~~vl~s~d~ti~l~d~~~~~--------~~~~~~i~~Ia~SpnG-~~ 230 (691)
+...++ +......| .|+- |+ +.+..+.||.|.++|..... .....|..+++.+++- ++
T Consensus 187 ~vkTQLIA-----HDKEV~DI---af~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpny 257 (364)
T KOG0290|consen 187 TVKTQLIA-----HDKEVYDI---AFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNY 257 (364)
T ss_pred ceeeEEEe-----cCcceeEE---Eecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchH
Confidence 222222 33444444 4654 44 44555559999999988554 1235677788777654 58
Q ss_pred EEEEeeC-CeEEEEecC-CCCceeeccCCCCCCCCeEEE----------ecCceEEEEEcCeEEEEcCCCC--ceEeecC
Q 005559 231 VACFTHD-GRLVVNNTN-FSSPVIDESCESALPPEQIAW----------CGMDSVLLYWNDMLVMVAPQAE--PVQYFYD 296 (691)
Q Consensus 231 IAl~t~d-g~i~I~ssd-~~~~l~e~d~~~~~~p~q~~W----------CG~davvl~~~~~l~liGp~~~--~v~f~~d 296 (691)
+|++..| ..+.|.+.- ....+.+...| ......++| ||+|+.++.|+-.- +.++.+. -..|.-.
T Consensus 258 mATf~~dS~~V~iLDiR~P~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q-~~~~~~~dPilay~a~ 335 (364)
T KOG0290|consen 258 MATFAMDSNKVVILDIRVPCTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ-MPRENGEDPILAYTAG 335 (364)
T ss_pred HhhhhcCCceEEEEEecCCCcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEeccc-ccccCCCCchhhhhcc
Confidence 9999887 567776543 34556666655 456777888 69999999997422 1222221 1222211
Q ss_pred C---CeEEe-ecCCceEEEecCcceeee
Q 005559 297 E---PLVLI-PECDGVRILSNSSMEFLQ 320 (691)
Q Consensus 297 ~---~~~l~-~E~DGvRIit~~~~efL~ 320 (691)
+ .+.-. +-.|++-|...+++|.|+
T Consensus 336 ~EVNqi~Ws~~~~Dwiai~~~kkleiLR 363 (364)
T KOG0290|consen 336 GEVNQIQWSSSQPDWIAICFGKKLEILR 363 (364)
T ss_pred ceeeeeeecccCCCEEEEEecCeeeEEe
Confidence 1 22333 456999999999999885
No 186
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.04 E-value=3.3e-05 Score=85.30 Aligned_cols=177 Identities=23% Similarity=0.342 Sum_probs=104.9
Q ss_pred cccccCCCCcCCCCCEEEEcCCCCeEEEEecCc-----------hhhhh------------------hcccCCCeEEEEc
Q 005559 22 ELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDS-----------KIVQL------------------YAESALRKLRIFN 72 (691)
Q Consensus 22 ~~y~~~w~~~~l~~~~vA~sp~GG~IA~~~~~~-----------k~~~~------------------~~~~~~~~I~Iys 72 (691)
-+-++.|+. |+....|++.+-|.|-+.|-+. |+... ...+.+-+|+||+
T Consensus 629 ~vtDl~WdP--FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 629 LVTDLHWDP--FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred eeeecccCC--CChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 344677866 5677889999999988875322 11110 1135799999999
Q ss_pred C-CCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEE-eC-Cc-eEE
Q 005559 73 S-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVF-WG-NG-VVC 147 (691)
Q Consensus 73 ~-sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~-~~-~G-~vl 147 (691)
. +|++-.++.+|. +.|.+++|||||++ .+|..||++|+|++...... +..+.. .-+-..++| |- +| +++
T Consensus 707 l~~~~~~~~l~gHt--dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p--v~Eg~g--pvgtRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHT--DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP--VYEGKG--PVGTRGARILWACDGRIVI 780 (1012)
T ss_pred hhhhhhhheeccCc--CceeEEEECCCCcceeeeecCceEEEeCCCCCCCc--cccCCC--CccCcceeEEEEecCcEEE
Confidence 6 799999999999 89999999999996 58999999999998532222 111111 112234444 43 34 444
Q ss_pred EecC----CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEe-CCeEEEEecC
Q 005559 148 VTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDED 209 (691)
Q Consensus 148 lt~~----~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~ 209 (691)
+++- .+.+.+.+...-....|.-..+...|+ .+-|.|..|.++..+.+. |.+|+.+...
T Consensus 781 v~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps---~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS---PLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred EecccccchhhhhhhhhhhccCCcceeeeecccCc---cccccccCCCceEEEecCCCceEEEEEec
Confidence 4421 122233222111000010000101122 233578888888777777 5677777654
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=0.00021 Score=74.20 Aligned_cols=172 Identities=12% Similarity=0.094 Sum_probs=111.8
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCC--CeE-EEEEeCCeEEEEeCC--CCeeccccCCCccccccCeEE
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED--QTL-ICVVQDGTVYRYNIH--AELIEPNASMGKECFEENVVE 137 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~d--e~L-v~v~~DGtV~ly~~~--G~~~~~sl~~~~~~~~~~V~~ 137 (691)
+.+.|+||+. .|+.+..++++. +.+-.+.|..+ .+. .+++.||+||+||+. ++.-++.+..+.. ..-+.
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~--~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~---~~f~~ 122 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPP--ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSG---TPFIC 122 (376)
T ss_pred cCCeEEEEeccchhhhheecCCC--CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCC---CcceE
Confidence 4689999996 799999999988 78889999863 444 589999999999884 5554444443310 11122
Q ss_pred EEEeCCceEEEecC-----CeEEEEecCCCc-e-EEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCC
Q 005559 138 CVFWGNGVVCVTEA-----NRYFCMADFATM-K-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210 (691)
Q Consensus 138 ~~~~~~G~vllt~~-----~~~~~v~n~~~~-~-~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~ 210 (691)
....-++-++.++. .-.+++|++... + +..+.+... ....+....| .+..+++..|.||-|-++|..+
T Consensus 123 ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~-DDVT~lrFHP----~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 123 LDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN-DDVTQLRFHP----SDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred eeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc-CcceeEEecC----CCCCeEEeecccceEEeeecCC
Confidence 12221444554433 336777776522 1 222322100 1245555443 3557888889999999998875
Q ss_pred cc--------cccCCCeeEEEECCCC-CEEEEEeeCCeEEEEec
Q 005559 211 VQ--------KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNT 245 (691)
Q Consensus 211 ~~--------~~~~~~i~~Ia~SpnG-~~IAl~t~dg~i~I~ss 245 (691)
-. -.+...|..+.|+.+| +.|-++|..++..+|.-
T Consensus 198 d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 198 DNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred CcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 43 1355679999998887 55888888888887753
No 188
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.01 E-value=0.00069 Score=72.88 Aligned_cols=235 Identities=12% Similarity=0.112 Sum_probs=148.4
Q ss_pred eEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeC-CCCeeccccCC-------Cccc------cccCeEEEEEeC
Q 005559 78 ISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASM-------GKEC------FEENVVECVFWG 142 (691)
Q Consensus 78 l~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~-~G~~~~~sl~~-------~~~~------~~~~V~~~~~~~ 142 (691)
+..+.-|+ -.|++|.+|||.+ .+.++.||++.-|+. .|+-.++.... +.+. -...|+...+++
T Consensus 135 ~~~~~~H~--~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIGKHQ--LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred ceeecccc--CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 44556666 5899999999877 579999999999977 56522111111 1000 124578889999
Q ss_pred CceEEEecCC-eEEEEecCCCceEE-EcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----ccc
Q 005559 143 NGVVCVTEAN-RYFCMADFATMKVC-ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVD 215 (691)
Q Consensus 143 ~G~vllt~~~-~~~~v~n~~~~~~~-~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~ 215 (691)
+|-.++|+.. +.+.||+.++.... .++. ++=.|..-.|-...+-...++.|.+|.+|+.+... -.|
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~g-------hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKG-------HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhcccc-------cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC
Confidence 9999999884 56778887643322 2232 11122222233333455667789999999998554 368
Q ss_pred CCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEe--------cCceEEEEEcC----eEEE
Q 005559 216 DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC--------GMDSVLLYWND----MLVM 283 (691)
Q Consensus 216 ~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC--------G~davvl~~~~----~l~l 283 (691)
++.|..|..+.-++.+..+..|.++.+|..- ++.-+-|..+ .+.+.-++.. ++|..+..|.- .++.
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~-~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGG-EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCC-CCCeeeEEEecccceeeccCCceEEEeeecccCceeE
Confidence 8999999999999888888899999999763 3333344433 3344444443 56777778852 2221
Q ss_pred E------cCCCC--ceEeec-------CCCeEEeecCCc-eEEEecCc----ceeeeccc
Q 005559 284 V------APQAE--PVQYFY-------DEPLVLIPECDG-VRILSNSS----MEFLQRVP 323 (691)
Q Consensus 284 i------Gp~~~--~v~f~~-------d~~~~l~~E~DG-vRIit~~~----~efL~~Vp 323 (691)
. .|..+ ...||- .++.++....|| ||+|-.+. ++.|...|
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc
Confidence 1 11111 111232 256777888899 99997554 46676666
No 189
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.00 E-value=0.0002 Score=80.23 Aligned_cols=186 Identities=16% Similarity=0.176 Sum_probs=129.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCC---Ce-EEEEEeCCeE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED---QT-LICVVQDGTV 110 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~d---e~-Lv~v~~DGtV 110 (691)
..+++||+|+.+|..- .-++|+||+. +-..+.++..|. ..|.++.||.. .+ |..++.|.-|
T Consensus 463 R~~~vSp~gqhLAsGD------------r~GnlrVy~Lq~l~~~~~~eAHe--sEilcLeyS~p~~~~kLLASasrdRlI 528 (1080)
T KOG1408|consen 463 RALAVSPDGQHLASGD------------RGGNLRVYDLQELEYTCFMEAHE--SEILCLEYSFPVLTNKLLASASRDRLI 528 (1080)
T ss_pred EEEEECCCcceecccC------------ccCceEEEEehhhhhhhheeccc--ceeEEEeecCchhhhHhhhhccCCceE
Confidence 4799999999999652 4689999997 456777888888 78999999952 23 4689999999
Q ss_pred EEEeCCCCe-eccccCCCccccccCeEEEEEeCCc--eEEEe-cCCe-EEEEecCCCceEEEcCCCCcC-CC--CceEEE
Q 005559 111 YRYNIHAEL-IEPNASMGKECFEENVVECVFWGNG--VVCVT-EANR-YFCMADFATMKVCELARPEVE-EL--PHCVAV 182 (691)
Q Consensus 111 ~ly~~~G~~-~~~sl~~~~~~~~~~V~~~~~~~~G--~vllt-~~~~-~~~v~n~~~~~~~~l~~~~l~-~~--~~~w~v 182 (691)
.+||..-++ +.-++..| ...|..++|-.+| .-+++ +..+ ++.-.+-....-..++..... .. .-.++|
T Consensus 529 HV~Dv~rny~l~qtld~H----SssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 529 HVYDVKRNYDLVQTLDGH----SSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred EEEecccccchhhhhccc----ccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence 999997665 22377666 5679999998877 33344 3333 222112111112223221100 11 222333
Q ss_pred ecCCcCCCCCeEEEEEeCCeEEEEecC-Ccc-------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 183 IEPKYTMTGSVEVLIGTDAGILMLDED-GVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 183 i~~~~S~d~~~~vl~s~d~ti~l~d~~-~~~-------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
.|+-..++++..|..|.+++.. |.+ ..+.|...++..-|.|-+||+-..|.++-+++
T Consensus 605 -----dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 605 -----DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred -----CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEE
Confidence 3577888999999999999977 333 34668888999999999999998888887764
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=0.0006 Score=78.49 Aligned_cols=239 Identities=16% Similarity=0.180 Sum_probs=130.4
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe----EEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEE
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT----LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVE 137 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~----Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~ 137 (691)
....|+||+. .|..+.++..|. .++.++.+.|..+ +++.+.||+|++|++ .|++++ ++..+ .+|..
T Consensus 35 ~~~~V~VyS~~Tg~~i~~l~~~~--a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk-t~~~~-----~~v~~ 106 (792)
T KOG1963|consen 35 TGNFVKVYSTATGECITSLEDHT--APLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK-TFDNN-----LPVHA 106 (792)
T ss_pred eCCEEEEEecchHhhhhhccccc--CccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE-EEecC-----CceeE
Confidence 4689999996 699999999888 7899999988654 358999999999998 577766 43322 22322
Q ss_pred EEE----eC----------CceEEEecCCeEEEEecCCCceEE--EcCCCC---cCCC--CceEEEecCCcCCCCCeEEE
Q 005559 138 CVF----WG----------NGVVCVTEANRYFCMADFATMKVC--ELARPE---VEEL--PHCVAVIEPKYTMTGSVEVL 196 (691)
Q Consensus 138 ~~~----~~----------~G~vllt~~~~~~~v~n~~~~~~~--~l~~~~---l~~~--~~~w~vi~~~~S~d~~~~vl 196 (691)
..+ .. +-.++-+.+.+.- ..+.+.. +...+. +.+. |.+.. +++.|+ ...
T Consensus 107 ~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~----~q~~~~~~~t~~~~~~d~~~~~~~~~~I~-----~~~~ge-~~~ 176 (792)
T KOG1963|consen 107 LVYKPAQADISANVYVSVEDYSILTTFSKKLS----KQSSRFVLATFDSAKGDFLKEHQEPKSIV-----DNNSGE-FKG 176 (792)
T ss_pred EEechhHhCccceeEeecccceeeeecccccc----cceeeeEeeeccccchhhhhhhcCCccEE-----EcCCce-EEE
Confidence 222 11 1111111111100 0000000 111111 1111 33322 223333 444
Q ss_pred EEeCCeEEEEecCC--cc-------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCc-----eeeccCCCCCCC
Q 005559 197 IGTDAGILMLDEDG--VQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP-----VIDESCESALPP 262 (691)
Q Consensus 197 ~s~d~ti~l~d~~~--~~-------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~-----l~e~d~~~~~~p 262 (691)
+..+..++.|.... .. ..|.-+++..++||||+++|.+..||+|.||+ ||+.. ...+.=| ..+.
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~-d~~~~~~~~t~t~lHWH-~~~V 254 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR-DFGSSDDSETCTLLHWH-HDEV 254 (792)
T ss_pred EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEe-ccccccccccceEEEec-cccc
Confidence 55555566666553 11 23555688999999999999999999999994 44421 1111111 1134
Q ss_pred CeEEEe---------cCceEEEEEcCeE---EEEcCCCC---ceEeecCCCeEEeecCCc-eEEEecCcceeeecc
Q 005559 263 EQIAWC---------GMDSVLLYWNDML---VMVAPQAE---PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRV 322 (691)
Q Consensus 263 ~q~~WC---------G~davvl~~~~~l---~liGp~~~---~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~V 322 (691)
..+.|. |.++|+..|..+. .+.--=|. ++.++.|+..+.+---|. +-+|....++..+.|
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tI 330 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTI 330 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhc
Confidence 455554 7888888886421 11101111 344455555553333354 666666556665554
No 191
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.99 E-value=0.00016 Score=80.42 Aligned_cols=168 Identities=13% Similarity=0.180 Sum_probs=120.7
Q ss_pred CCCeEEEEcCC-C--ceeEEEEecCCCCCEEEEEe-cCCCeE-EEEEeCCeEEEEeCC-C--Cee-------ccccCCCc
Q 005559 64 ALRKLRIFNSA-G--VLISETVWKNPGGRLIGMSW-SEDQTL-ICVVQDGTVYRYNIH-A--ELI-------EPNASMGK 128 (691)
Q Consensus 64 ~~~~I~Iys~s-G--~ll~si~~~~~~~~Iv~~~f-s~de~L-v~v~~DGtV~ly~~~-G--~~~-------~~sl~~~~ 128 (691)
.|.+|++|+.. | --+++|.-|. +.|.+++. -++..| ++++=|+.|.+||+. | .+. .-+++.+.
T Consensus 93 sDtTVK~W~~~~~~~~c~stir~H~--DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~ 170 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNTFCMSTIRTHK--DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP 170 (735)
T ss_pred CCceEEEeecccCcchhHhhhhccc--chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC
Confidence 68999999974 4 3467788787 88999999 666666 589999999999986 3 111 11333121
Q ss_pred cccccCeEEEEEeCCceEEEecC-CeEEEEecCC-CceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEE
Q 005559 129 ECFEENVVECVFWGNGVVCVTEA-NRYFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILML 206 (691)
Q Consensus 129 ~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~-~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~ 206 (691)
...|....-.++|.+++.++ .....+|+-. ..+..+|.. +.-..-+++ .++||...+.++.|+||.+|
T Consensus 171 ---k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG----HTdNVr~ll---~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 171 ---KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG----HTDNVRVLL---VNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred ---ccceeeeecCCcceEEEecCcccceEEeccccccceeeeec----cccceEEEE---EcCCCCeEeecCCCceEEee
Confidence 46688878789998888877 5577777733 233444432 112222332 34699999999999999999
Q ss_pred ecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEE
Q 005559 207 DEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVN 243 (691)
Q Consensus 207 d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ 243 (691)
|..-+. ..|...++.+..||+=+++-+++.||.|..-
T Consensus 241 dLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 241 DLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred eccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEec
Confidence 987433 4677779999999999999999999988653
No 192
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.98 E-value=0.0053 Score=66.42 Aligned_cols=248 Identities=10% Similarity=0.015 Sum_probs=137.1
Q ss_pred EEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCC-----CCCEEEEEecCCCeEEEEEe---CCe
Q 005559 39 ACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNP-----GGRLIGMSWSEDQTLICVVQ---DGT 109 (691)
Q Consensus 39 A~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~-----~~~Iv~~~fs~de~Lv~v~~---DGt 109 (691)
.+||+|+.+.++..-.... .-......|.+|+. +++.+.+|+-... +.....+++||||+.+.|+. ++.
T Consensus 52 ~~spDg~~lyva~~~~~R~--~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~ 129 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRI--ARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPA 129 (352)
T ss_pred eECCCCCEEEEEecccccc--ccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCE
Confidence 4999999999886311100 00124789999996 7999999986321 12356899999999665443 899
Q ss_pred EEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcC
Q 005559 110 VYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYT 188 (691)
Q Consensus 110 V~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S 188 (691)
|-++|+. ++.+. .+.-+ ++..-.-..+++..+...++....+.+-++.+.. ....+....-..-....|.|+
T Consensus 130 V~VvD~~~~kvv~-ei~vp-----~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~~~~v~~rP~~~ 202 (352)
T TIGR02658 130 VGVVDLEGKAFVR-MMDVP-----DCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPEDEYLINHPAYS 202 (352)
T ss_pred EEEEECCCCcEEE-EEeCC-----CCcEEEEecCCccEEEeecCceEEEEecCCCceE-EeeeeeecCCccccccCCceE
Confidence 9999995 55554 32221 1111112233445555555554444332211111 111000000000001112345
Q ss_pred CCCCeEEEEEeCCeEEEEecCCcc-------c----------ccCCCeeEEEECCCCCEEEEEeeC----------CeEE
Q 005559 189 MTGSVEVLIGTDAGILMLDEDGVQ-------K----------VDDTLSQKMAVSPNGNFVACFTHD----------GRLV 241 (691)
Q Consensus 189 ~d~~~~vl~s~d~ti~l~d~~~~~-------~----------~~~~~i~~Ia~SpnG~~IAl~t~d----------g~i~ 241 (691)
+.++..++.+.+|+|+++|..+.. . -..+.+.-|+++|+|+.+=.+... ++++
T Consensus 203 ~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 203 NKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred cCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 645678888888999999965432 0 122345568888888765553321 2455
Q ss_pred EEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecCCC-eE-EeecCCc-eEEEecCccee
Q 005559 242 VNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEP-LV-LIPECDG-VRILSNSSMEF 318 (691)
Q Consensus 242 I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d~~-~~-l~~E~DG-vRIit~~~~ef 318 (691)
+++..-.+.+..+ .+|.....+.++.|+. .+ ...+.+| |-||...+.+.
T Consensus 283 ViD~~t~kvi~~i----------------------------~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 283 VVDAKTGKRLRKI----------------------------ELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EEECCCCeEEEEE----------------------------eCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 5543322222222 2344555677777765 33 3455666 99999988888
Q ss_pred eeccc
Q 005559 319 LQRVP 323 (691)
Q Consensus 319 L~~Vp 323 (691)
+.+|+
T Consensus 335 i~~i~ 339 (352)
T TIGR02658 335 LSSVN 339 (352)
T ss_pred Eeeec
Confidence 88873
No 193
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=4.7e-05 Score=89.46 Aligned_cols=263 Identities=15% Similarity=0.186 Sum_probs=161.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC---CC----ceeEEEEecCCCCCEEEEEecCCCe-----EEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS---AG----VLISETVWKNPGGRLIGMSWSEDQT-----LIC 103 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~---sG----~ll~si~~~~~~~~Iv~~~fs~de~-----Lv~ 103 (691)
-.+|.||.|-+.-.+.+-.+.+-.. -+...++.||.. ++ +++.++.-. .+-..+.|++.+. ++-
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~s-fst~~slEifeld~~~~~~dlk~~~s~~s~---~rF~kL~W~~~g~~~~GlIaG 85 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDAS-FSTSASLEIFELDFSDESSDLKPVGSLQSS---NRFNKLAWGSYGSHSHGLIAG 85 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccc-cccccccceeeecccCcccccccccccccc---ccceeeeecccCCCccceeec
Confidence 3678899984222222222221111 134677777764 33 367777654 4788899988533 456
Q ss_pred EEeCCeEEEEeCCC----C---eeccccCCCccccccCeEEEEEeC-CceEEEecCCe-EEEEecCCCce-EEEcCCCCc
Q 005559 104 VVQDGTVYRYNIHA----E---LIEPNASMGKECFEENVVECVFWG-NGVVCVTEANR-YFCMADFATMK-VCELARPEV 173 (691)
Q Consensus 104 v~~DGtV~ly~~~G----~---~~~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~~~-~~~v~n~~~~~-~~~l~~~~l 173 (691)
+.+||.|-+||+.- + .+. ++..| .+.|....|.. .|.++++++++ -+.+||+..+. +........
T Consensus 86 G~edG~I~ly~p~~~~~~~~~~~la-~~~~h----~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 86 GLEDGNIVLYDPASIIANASEEVLA-TKSKH----TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred cccCCceEEecchhhccCcchHHHh-hhccc----CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence 89999999998852 1 122 34444 67799999997 66677776643 44556655431 111111111
Q ss_pred CCCCceEEEecCCcCCCCC---eEEEEEeCCeEEEEecCCcc---c----ccCCCeeEEEECCCCC-EEEEEeeCC---e
Q 005559 174 EELPHCVAVIEPKYTMTGS---VEVLIGTDAGILMLDEDGVQ---K----VDDTLSQKMAVSPNGN-FVACFTHDG---R 239 (691)
Q Consensus 174 ~~~~~~w~vi~~~~S~d~~---~~vl~s~d~ti~l~d~~~~~---~----~~~~~i~~Ia~SpnG~-~IAl~t~dg---~ 239 (691)
.+.++|.+. +++ +.+.++.+++..+||..... . .....+..+++.||+- .|++.++|. .
T Consensus 161 ~~eI~~lsW-------NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 161 PSEIKCLSW-------NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPV 233 (1049)
T ss_pred cccceEecc-------chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCce
Confidence 122333322 333 33444457789999999764 1 1224488999999984 577777653 6
Q ss_pred EEEEecCCC-CceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecCCCeEEeecCCc-eEEEecCcce
Q 005559 240 LVVNNTNFS-SPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSME 317 (691)
Q Consensus 240 i~I~ssd~~-~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d~~~~l~~E~DG-vRIit~~~~e 317 (691)
|.+|+.-|- ..+.++..| ..-+..|.||+.|.-. .|.+-.|| +-+|..++.|
T Consensus 234 iqlWDlR~assP~k~~~~H-~~GilslsWc~~D~~l-------------------------llSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 234 IQLWDLRFASSPLKILEGH-QRGILSLSWCPQDPRL-------------------------LLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred eEeecccccCCchhhhccc-ccceeeeccCCCCchh-------------------------hhcccCCCCeeEecCCCce
Confidence 788875543 335566555 4467899999986432 33445677 7777888889
Q ss_pred eeeccchhhhhhcccCCC--ChhhH
Q 005559 318 FLQRVPASTEQIFAIGST--SPAAL 340 (691)
Q Consensus 318 fL~~Vp~~~~~If~igS~--~Pga~ 340 (691)
.|..+|.....+|.+-.+ .|+-+
T Consensus 288 vl~~~p~~~nW~fdv~w~pr~P~~~ 312 (1049)
T KOG0307|consen 288 VLGELPAQGNWCFDVQWCPRNPSVM 312 (1049)
T ss_pred EeeecCCCCcceeeeeecCCCcchh
Confidence 999999987788888766 45543
No 194
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.96 E-value=0.0003 Score=78.25 Aligned_cols=213 Identities=11% Similarity=0.132 Sum_probs=120.8
Q ss_pred cCCCeEEEEcCC-CceeEE--EEecCCCCCEEEEEecCCCeE--EEEEeCCeEEEEeCCCCee-------ccccCCCcc-
Q 005559 63 SALRKLRIFNSA-GVLISE--TVWKNPGGRLIGMSWSEDQTL--ICVVQDGTVYRYNIHAELI-------EPNASMGKE- 129 (691)
Q Consensus 63 ~~~~~I~Iys~s-G~ll~s--i~~~~~~~~Iv~~~fs~de~L--v~v~~DGtV~ly~~~G~~~-------~~sl~~~~~- 129 (691)
+.|.+|+.|+-. ++++.. ..+|. +.|.+++|.+.+.. ++++.||.+.|||+..+.. .-.++++.+
T Consensus 119 sGDsT~r~Wdvk~s~l~G~~~~~GH~--~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ 196 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVGGRLNLGHT--GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA 196 (720)
T ss_pred cCCceeeeeeeccceeecceeecccc--cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence 379999999974 566666 77888 89999999998884 5799999999998853321 001222211
Q ss_pred -----c----------cccCe---EEEEEeCCceEEEecC--CeEEEEecCCCce-EEEcCCCC---cC-CCCceEEEec
Q 005559 130 -----C----------FEENV---VECVFWGNGVVCVTEA--NRYFCMADFATMK-VCELARPE---VE-ELPHCVAVIE 184 (691)
Q Consensus 130 -----~----------~~~~V---~~~~~~~~G~vllt~~--~~~~~v~n~~~~~-~~~l~~~~---l~-~~~~~w~vi~ 184 (691)
+ ....| +++.++.+-..+++.+ .....|||+..+. .++...++ .. +.....-++.
T Consensus 197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 0 01112 1244555555555544 3577888875321 11111100 00 1000111110
Q ss_pred CCcCCCCCeEEEEEeCCeEEEEecCCcc----c-----ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCC-CCceeec
Q 005559 185 PKYTMTGSVEVLIGTDAGILMLDEDGVQ----K-----VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNF-SSPVIDE 254 (691)
Q Consensus 185 ~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~-----~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~-~~~l~e~ 254 (691)
--....|.....-..|++||.|+..+.. . ....-+.+=..||+|.+|++++.|+..+||..+- .....-+
T Consensus 277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l 356 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL 356 (720)
T ss_pred EEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence 0112345666555669999999988543 1 1122245668999999999999998777776542 2111111
Q ss_pred cCCCCCCCCeEEE----------ecCceEEEEEc
Q 005559 255 SCESALPPEQIAW----------CGMDSVLLYWN 278 (691)
Q Consensus 255 d~~~~~~p~q~~W----------CG~davvl~~~ 278 (691)
-.+ ......+.| |.+|.-+..|+
T Consensus 357 ~Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 357 LGH-TREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred hCc-ceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 111 112334445 57888888885
No 195
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.95 E-value=0.00054 Score=72.06 Aligned_cols=127 Identities=18% Similarity=0.277 Sum_probs=93.6
Q ss_pred CcCCCC-CeEEEEEeCCeEEEEecCCcc-------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEec---CCCCceeec
Q 005559 186 KYTMTG-SVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT---NFSSPVIDE 254 (691)
Q Consensus 186 ~~S~d~-~~~vl~s~d~ti~l~d~~~~~-------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss---d~~~~l~e~ 254 (691)
++||+. .+.+..+.|++|.+||..... ..|.+-|.-|+++-+..+||++.++|++.||+. .+++...+|
T Consensus 264 qWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~f 343 (440)
T KOG0302|consen 264 QWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATF 343 (440)
T ss_pred ccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeE
Confidence 456654 566777889999999988653 457888999999999999999999999999974 345667778
Q ss_pred cCCCCCCCCeEEEe----------cCceEEEEEcC---------------e------EEEEcCCCC----ceEeecC-CC
Q 005559 255 SCESALPPEQIAWC----------GMDSVLLYWND---------------M------LVMVAPQAE----PVQYFYD-EP 298 (691)
Q Consensus 255 d~~~~~~p~q~~WC----------G~davvl~~~~---------------~------l~liGp~~~----~v~f~~d-~~ 298 (691)
+-+ ..+...+.|. |.|-.+..|+- . .+|+-|.|+ -+.|-.. ..
T Consensus 344 k~H-k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 344 KYH-KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred Eec-cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC
Confidence 766 5578899997 77777788851 1 144446664 3445443 34
Q ss_pred eEEeecCCceEEEec
Q 005559 299 LVLIPECDGVRILSN 313 (691)
Q Consensus 299 ~~l~~E~DGvRIit~ 313 (691)
.++.+-+||+-||-+
T Consensus 423 ~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 423 LLVSTAIDGFNVFKT 437 (440)
T ss_pred eEEEecccceeEEEe
Confidence 667888999888754
No 196
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.95 E-value=0.00016 Score=78.19 Aligned_cols=171 Identities=13% Similarity=0.164 Sum_probs=111.4
Q ss_pred cCCCeEEEEcCCCceeEEEEecCC-CC----CEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEE
Q 005559 63 SALRKLRIFNSAGVLISETVWKNP-GG----RLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVE 137 (691)
Q Consensus 63 ~~~~~I~Iys~sG~ll~si~~~~~-~~----~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~ 137 (691)
..+..|++|.-+|+ +.+++--.. .| =|-+..+| -.++.++.+|+|+|||+.-++....+..| +..|..
T Consensus 54 ~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~~~Cv~~~s~S--~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh----~stvt~ 126 (673)
T KOG4378|consen 54 AGDKVMRIKEKDGK-TPEVPRVRKLTGDNAFCVACASQS--LYEISGGQSGCVKIWDLRAKLIHRFLKDH----QSTVTY 126 (673)
T ss_pred CCceeEEEecccCC-CCccceeeccccchHHHHhhhhcc--eeeeccCcCceeeehhhHHHHHhhhccCC----cceeEE
Confidence 36888999999998 444432110 01 14444454 44678999999999999988766577766 456666
Q ss_pred EEEeCC--ceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCC-CeEEEEEeCCeEEEEecCCcc--
Q 005559 138 CVFWGN--GVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG-SVEVLIGTDAGILMLDEDGVQ-- 212 (691)
Q Consensus 138 ~~~~~~--G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~-~~~vl~s~d~ti~l~d~~~~~-- 212 (691)
+.-..+ -++-+.-+|++....--.+.+...|..+. .... -.+ .||+.. ..+.+++.+|+|-+||.+|..
T Consensus 127 v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s---gqsv-Rll--~ys~skr~lL~~asd~G~VtlwDv~g~sp~ 200 (673)
T KOG4378|consen 127 VDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS---GQSV-RLL--RYSPSKRFLLSIASDKGAVTLWDVQGMSPI 200 (673)
T ss_pred EEecCCcceeEEeccCCcEEEEecccCccccceecCC---CCeE-EEe--ecccccceeeEeeccCCeEEEEeccCCCcc
Confidence 544322 34444444565544322233334444311 1111 122 577654 566778889999999999886
Q ss_pred ----cccCCCeeEEEECCCC-CEEEEEeeCCeEEEEecC
Q 005559 213 ----KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 213 ----~~~~~~i~~Ia~SpnG-~~IAl~t~dg~i~I~ssd 246 (691)
..|..|-..|+|||.. .++++.+.|.+|.++++.
T Consensus 201 ~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 201 FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred cchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 4688999999999977 578889999999998775
No 197
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.95 E-value=0.00067 Score=69.94 Aligned_cols=219 Identities=9% Similarity=0.084 Sum_probs=132.9
Q ss_pred eeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCc---eEEEecCC
Q 005559 77 LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNG---VVCVTEAN 152 (691)
Q Consensus 77 ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G---~vllt~~~ 152 (691)
++....-|. +.|.+++-+ +. +++.++|-||++||+.-+..--.+..| .+.|..++|++.- -.+-.++.
T Consensus 35 ~lF~~~aH~--~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~H----agsitaL~F~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 35 PLFAFSAHA--GSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSH----AGSITALKFYPPLSKSHLLSGSDD 106 (362)
T ss_pred ccccccccc--cceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceecc----ccceEEEEecCCcchhheeeecCC
Confidence 355566666 889999885 66 578999999999999744321144444 4668888887643 23333333
Q ss_pred eEEEEecCCCc-eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecC-Ccc----cccCCCeeEEEECC
Q 005559 153 RYFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ----KVDDTLSQKMAVSP 226 (691)
Q Consensus 153 ~~~~v~n~~~~-~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~-~~~----~~~~~~i~~Ia~Sp 226 (691)
....+|+...- .+..++.. .+.....+| .|+|..-+.++.|+.+..|+.- |.. .+... -+.|.|||
T Consensus 107 G~i~iw~~~~W~~~~slK~H--~~~Vt~lsi-----HPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~ 178 (362)
T KOG0294|consen 107 GHIIIWRVGSWELLKSLKAH--KGQVTDLSI-----HPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSP 178 (362)
T ss_pred CcEEEEEcCCeEEeeeeccc--ccccceeEe-----cCCCceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcC
Confidence 34455554311 11122210 011333343 3789999999999999999965 332 22222 23499999
Q ss_pred CCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEe--------cCceEEEEEcC-----eEEEEcCCCC-ceE
Q 005559 227 NGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC--------GMDSVLLYWND-----MLVMVAPQAE-PVQ 292 (691)
Q Consensus 227 nG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC--------G~davvl~~~~-----~l~liGp~~~-~v~ 292 (691)
.|.+.+.... ..|-|+..|...++.+..- +..+.-+.|- |+|..+..|+. .-.+.+|.+. ---
T Consensus 179 ~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i 255 (362)
T KOG0294|consen 179 QGDHFVVSGR-NKIDIYQLDNASVFREIEN--PKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDI 255 (362)
T ss_pred CCCEEEEEec-cEEEEEecccHhHhhhhhc--cccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeee
Confidence 9998887765 4677888886666554321 1234444443 67778878864 2345566654 112
Q ss_pred eecC---CCeEEeecCCc-eEEEecC
Q 005559 293 YFYD---EPLVLIPECDG-VRILSNS 314 (691)
Q Consensus 293 f~~d---~~~~l~~E~DG-vRIit~~ 314 (691)
|+|+ +..++....|| ||||.-+
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEcc
Confidence 2233 23445666799 9999866
No 198
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.94 E-value=0.00024 Score=76.05 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=111.1
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe--EEEEEeCCeEEEEeCCC--Ce-eccccCCCccccccCeE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNIHA--EL-IEPNASMGKECFEENVV 136 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~--Lv~v~~DGtV~ly~~~G--~~-~~~sl~~~~~~~~~~V~ 136 (691)
+.|.||++|+- .|+.-.++..|. +.|.++.|.|.+- |++++-||+|+++|..- +. ....+. ++|-
T Consensus 263 saD~TV~lWD~~~g~p~~s~~~~~--k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-------g~VE 333 (463)
T KOG0270|consen 263 SADKTVKLWDVDTGKPKSSITHHG--KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-------GEVE 333 (463)
T ss_pred CCCceEEEEEcCCCCcceehhhcC--CceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-------cceE
Confidence 58999999996 799999999777 8999999999643 78899999999998862 11 111222 2233
Q ss_pred EEEE---eCCceEEEecCCeEEEEecCC-CceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc
Q 005559 137 ECVF---WGNGVVCVTEANRYFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ 212 (691)
Q Consensus 137 ~~~~---~~~G~vllt~~~~~~~v~n~~-~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~ 212 (691)
.+.. +++-+++-|.+|.++...-.. +..+|.+.-+. +..++.++- ...-.+.++.+.+++|.+|+.++..
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd--~~ISgl~~n----~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD--DEISGLSVN----IQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEecc--CCcceEEec----CCCCcceeeccccceEEEEeecCCC
Confidence 3222 235566666677777764322 23456554210 225666652 2345678888999999999988655
Q ss_pred -------cccCCCeeEEEECCCCC-EEEEEeeCCeEEEEec
Q 005559 213 -------KVDDTLSQKMAVSPNGN-FVACFTHDGRLVVNNT 245 (691)
Q Consensus 213 -------~~~~~~i~~Ia~SpnG~-~IAl~t~dg~i~I~ss 245 (691)
...-+..+.+++-|+-. ++|+++..+.++||+.
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeec
Confidence 12234455566666654 5677777788888864
No 199
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.93 E-value=0.0031 Score=66.84 Aligned_cols=188 Identities=18% Similarity=0.217 Sum_probs=120.5
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCc--eeEEEEecCCCCCEEEEEe-cCCCe-E-EEEEe-CC
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV--LISETVWKNPGGRLIGMSW-SEDQT-L-ICVVQ-DG 108 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~--ll~si~~~~~~~~Iv~~~f-s~de~-L-v~v~~-DG 108 (691)
...+.+.+.|..++..+ .+..+.+|+..+. .+..+..... ..+..+.+ ++++. . ...+. |+
T Consensus 68 i~~~~~~~~~~~~~~~~------------~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 68 ITSIAFSPDGELLLSGS------------SDGTIKLWDLDNGEKLIKSLEGLHD-SSVSKLALSSPDGNSILLASSSLDG 134 (466)
T ss_pred EEEEEECCCCcEEEEec------------CCCcEEEEEcCCCceeEEEEeccCC-CceeeEEEECCCcceEEeccCCCCc
Confidence 34566777777776664 5889999998776 6777777541 26777777 77776 3 34445 99
Q ss_pred eEEEEeCCC--CeeccccCCCccccccCeEEEEEeCCceEEEecC--CeEEEEecCCC-ceEEEcCCCCcCCCCceEEEe
Q 005559 109 TVYRYNIHA--ELIEPNASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCMADFAT-MKVCELARPEVEELPHCVAVI 183 (691)
Q Consensus 109 tV~ly~~~G--~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~--~~~~~v~n~~~-~~~~~l~~~~l~~~~~~w~vi 183 (691)
++++|+..+ .... .+..+ ...|..+.+.++|..++... .....+|+... .....+..+. ....+++
T Consensus 135 ~~~~~~~~~~~~~~~-~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~-- 205 (466)
T COG2319 135 TVKLWDLSTPGKLIR-TLEGH----SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHT--DPVSSLA-- 205 (466)
T ss_pred cEEEEEecCCCeEEE-EEecC----cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCC--CceEEEE--
Confidence 999999985 4444 34434 35677889999996555554 45666777654 3333333200 1123333
Q ss_pred cCCcCCCCC-eEEEEEeCCeEEEEecCCcc--c----ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCC
Q 005559 184 EPKYTMTGS-VEVLIGTDAGILMLDEDGVQ--K----VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS 248 (691)
Q Consensus 184 ~~~~S~d~~-~~vl~s~d~ti~l~d~~~~~--~----~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~ 248 (691)
+++++. ..+..+.|++|.+|+..... . .+.... -..|+|+|.++++.+.++.+.+|+....
T Consensus 206 ---~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 273 (466)
T COG2319 206 ---FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSS 273 (466)
T ss_pred ---EcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCC
Confidence 446776 33444779999999655222 1 122222 2289999999999999999999977533
No 200
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.92 E-value=0.00014 Score=78.75 Aligned_cols=218 Identities=11% Similarity=0.137 Sum_probs=147.2
Q ss_pred EEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCcee-EEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeC
Q 005559 38 VACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLI-SETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI 115 (691)
Q Consensus 38 vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll-~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~ 115 (691)
.-..|+|..+-+.. .--++.||+..--.. -.-...+.+-.-..++-|||.++ ....+||.|+|||+
T Consensus 471 ckL~pdgrtLivGG------------eastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDL 538 (705)
T KOG0639|consen 471 CKLLPDGRTLIVGG------------EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDL 538 (705)
T ss_pred eEecCCCceEEecc------------ccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEc
Confidence 44578888776554 467899999754221 11222222135778889999998 47999999999999
Q ss_pred CCCeeccccCCCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeE
Q 005559 116 HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVE 194 (691)
Q Consensus 116 ~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~ 194 (691)
+.+.+.-.|.++ .+++..+.|+++|.-+-|+. .+.+.-|++.+.+ ++.. ++.. -.|.+-.+.|++..+
T Consensus 539 hnq~~VrqfqGh----tDGascIdis~dGtklWTGGlDntvRcWDlregr--qlqq----hdF~-SQIfSLg~cP~~dWl 607 (705)
T KOG0639|consen 539 HNQTLVRQFQGH----TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR--QLQQ----HDFS-SQIFSLGYCPTGDWL 607 (705)
T ss_pred ccceeeecccCC----CCCceeEEecCCCceeecCCCccceeehhhhhhh--hhhh----hhhh-hhheecccCCCccce
Confidence 877543378877 67888889999999998877 4566667754321 1111 1100 012223567788877
Q ss_pred EEEEeCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecC
Q 005559 195 VLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGM 270 (691)
Q Consensus 195 vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~ 270 (691)
++.-.++.+.+...++.. ..|..-|..+.|++.|++.++.+.|+-+-.|++-++..+.+..-. +. +.=|
T Consensus 608 avGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~--Ss---VlsC-- 680 (705)
T KOG0639|consen 608 AVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES--SS---VLSC-- 680 (705)
T ss_pred eeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc--Cc---ceee--
Confidence 777777788888888765 456777999999999999999999998889988888776553321 11 1112
Q ss_pred ceEEEEEcCeEEEEcCCC
Q 005559 271 DSVLLYWNDMLVMVAPQA 288 (691)
Q Consensus 271 davvl~~~~~l~liGp~~ 288 (691)
=++.+|...+.|.+.
T Consensus 681 ---DIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 681 ---DISFDDKYIVTGSGD 695 (705)
T ss_pred ---eeccCceEEEecCCC
Confidence 135566777777655
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.92 E-value=0.0005 Score=75.19 Aligned_cols=184 Identities=13% Similarity=0.059 Sum_probs=111.2
Q ss_pred CCeEEEEcCCC-----ceeEEEEecCCCCCEEEEEec-----CCC-eEEEEEeCCeEEEEeCCCCeeccccC--CCcccc
Q 005559 65 LRKLRIFNSAG-----VLISETVWKNPGGRLIGMSWS-----EDQ-TLICVVQDGTVYRYNIHAELIEPNAS--MGKECF 131 (691)
Q Consensus 65 ~~~I~Iys~sG-----~ll~si~~~~~~~~Iv~~~fs-----~de-~Lv~v~~DGtV~ly~~~G~~~~~sl~--~~~~~~ 131 (691)
...+.+|+..| +.|.+..+.. ....+=+|. +.+ +|++...-|.|.++++.-+-....+. .+.+
T Consensus 143 g~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~-- 218 (636)
T KOG2394|consen 143 GRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLIN-- 218 (636)
T ss_pred CCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhccccc--
Confidence 45677777765 2333333433 234444552 333 48899999999999885322111222 1211
Q ss_pred ccCeEEEEEe--CCceEEEe-cCCeEEEEec-----CCCceEEEcCCCC----------cCCC-CceEEE-----ecCCc
Q 005559 132 EENVVECVFW--GNGVVCVT-EANRYFCMAD-----FATMKVCELARPE----------VEEL-PHCVAV-----IEPKY 187 (691)
Q Consensus 132 ~~~V~~~~~~--~~G~vllt-~~~~~~~v~n-----~~~~~~~~l~~~~----------l~~~-~~~w~v-----i~~~~ 187 (691)
...|..++.- +++++++. .+++.|..+- ...|...-++++. .... ..+|++ ..-.|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 3445555532 35655554 5677665521 1122111111111 0011 255653 23348
Q ss_pred CCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCcee
Q 005559 188 TMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (691)
Q Consensus 188 S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~ 252 (691)
|+||+..+.++.|+.+.+++-+... +.--|....+++|||||+||++++|.-+.||+---.++..
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE
Confidence 9999999999999999999988665 3345778999999999999999999999999754444443
No 202
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.90 E-value=0.0028 Score=70.65 Aligned_cols=155 Identities=14% Similarity=0.157 Sum_probs=95.6
Q ss_pred CCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEE-EEeC---CeEEEEeCC-CCeeccccCCCccccccCeEEE
Q 005559 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LIC-VVQD---GTVYRYNIH-AELIEPNASMGKECFEENVVEC 138 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~-v~~D---GtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~ 138 (691)
...|.+=+.+|.-...+.- . +.+..-.||||++ ++. ++.+ ..+.++|+. |+..+.+.. .+.+...
T Consensus 168 ~~~l~~~d~dg~~~~~~~~-~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~------~g~~~~~ 238 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVK-G--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS------QGMLVVS 238 (419)
T ss_pred cceEEEECCCCCceeEEcc-C--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC------CCcEEee
Confidence 4577777888886555542 2 4788999999997 443 3333 346667885 444332211 2334456
Q ss_pred EEeCCce-EEEecC----CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeC---CeEEEEecCC
Q 005559 139 VFWGNGV-VCVTEA----NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---AGILMLDEDG 210 (691)
Q Consensus 139 ~~~~~G~-vllt~~----~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d---~ti~l~d~~~ 210 (691)
.++++|- ++++.+ .++|.++ .++....+++.. +. ....|.|||||+.+++.+.. ..||+++.++
T Consensus 239 ~~SPDG~~la~~~~~~g~~~Iy~~d-l~~g~~~~LT~~-----~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 239 DVSKDGSKLLLTMAPKGQPDIYLYD-TNTKTLTQITNY-----PG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EECCCCCEEEEEEccCCCcEEEEEE-CCCCcEEEcccC-----CC--ccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 6778883 444332 3566664 444556666531 11 13356788999999988863 2699999875
Q ss_pred cc--cccC-CCeeEEEECCCCCEEEEEeeC
Q 005559 211 VQ--KVDD-TLSQKMAVSPNGNFVACFTHD 237 (691)
Q Consensus 211 ~~--~~~~-~~i~~Ia~SpnG~~IAl~t~d 237 (691)
.. .... +.. ..++||+|+.||..+..
T Consensus 311 g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 311 GSVEQVVFHGKN-NSSVSTYKNYIVYSSRE 339 (419)
T ss_pred CCeEeCccCCCc-CceECCCCCEEEEEEcC
Confidence 44 2222 222 35899999999988753
No 203
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=97.86 E-value=0.00045 Score=77.56 Aligned_cols=234 Identities=13% Similarity=0.110 Sum_probs=137.6
Q ss_pred CCCeEEEEcCCCc-eeEEEEecCCCCCEEEEEecCCCe----EEEEEeCCeEEEEeCCCCe--eccccCCCccccccCeE
Q 005559 64 ALRKLRIFNSAGV-LISETVWKNPGGRLIGMSWSEDQT----LICVVQDGTVYRYNIHAEL--IEPNASMGKECFEENVV 136 (691)
Q Consensus 64 ~~~~I~Iys~sG~-ll~si~~~~~~~~Iv~~~fs~de~----Lv~v~~DGtV~ly~~~G~~--~~~sl~~~~~~~~~~V~ 136 (691)
..+.|-+|++.-. ...++++|. ++|.++.|-|+.+ +|++..||+|++|-+.-+. ..++++++ ...+.
T Consensus 32 a~~~Iav~dp~k~~i~t~l~GH~--a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~----~~~~~ 105 (764)
T KOG1063|consen 32 AGPAIAVADPEKILIVTTLDGHV--ARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGH----CKECV 105 (764)
T ss_pred CCceEEEeCcccceeEEeccCCc--cceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCc----ceeEE
Confidence 4677888887544 566788998 8999999998776 8999999999999775332 22355553 12222
Q ss_pred EEEEeCCceEEEe--cCCeEEEEecCCCceEEEcCCCCcC-C--CCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCc
Q 005559 137 ECVFWGNGVVCVT--EANRYFCMADFATMKVCELARPEVE-E--LPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV 211 (691)
Q Consensus 137 ~~~~~~~G~vllt--~~~~~~~v~n~~~~~~~~l~~~~l~-~--~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~ 211 (691)
.+.. +..+++ .+..++.+|+.+.+.+..+...... . -|.|.+.++ ++-.++++.+++...++.-+.
T Consensus 106 --cv~a-~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~------~~~~~lla~Ggs~~~v~~~s~ 176 (764)
T KOG1063|consen 106 --CVVA-RSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK------NNKTFLLACGGSKFVVDLYSS 176 (764)
T ss_pred --EEEe-eeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc------cCCcEEEEecCcceEEEEecc
Confidence 2222 222222 3556777888754442222111111 1 167777653 222344444443333222211
Q ss_pred -----c-----cccCCCeeEEEECCCCC---EEEEEeeCCeEEEEecC----CCCceeeccCCCCCCCCeEE-EecCceE
Q 005559 212 -----Q-----KVDDTLSQKMAVSPNGN---FVACFTHDGRLVVNNTN----FSSPVIDESCESALPPEQIA-WCGMDSV 273 (691)
Q Consensus 212 -----~-----~~~~~~i~~Ia~SpnG~---~IAl~t~dg~i~I~ssd----~~~~l~e~d~~~~~~p~q~~-WCG~dav 273 (691)
. ..|...|+.++|+--|. ++|+.++|..|+||..- -++...|.+... .+.+=. -|++ .+
T Consensus 177 ~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~--~~~~~~f~~l~-~i 253 (764)
T KOG1063|consen 177 SADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT--LSNLPVFMILE-EI 253 (764)
T ss_pred CCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccc--ccCCceeeeee-eE
Confidence 1 46888999999998776 89999999999988642 222334444322 122212 2332 33
Q ss_pred EEEEcCeEEEEcCCCC--ceEeecCCCeEEeecCCc-eEEEecCc
Q 005559 274 LLYWNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSS 315 (691)
Q Consensus 274 vl~~~~~l~liGp~~~--~v~f~~d~~~~l~~E~DG-vRIit~~~ 315 (691)
.....-+.+|.||.+- ++.+.+++-.+|.+..|- +-||-+++
T Consensus 254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~ 298 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDE 298 (764)
T ss_pred EEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCC
Confidence 3444456678888875 666766666667777776 66665554
No 204
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.83 E-value=0.00092 Score=70.39 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=106.3
Q ss_pred ceeEEEEecCCCCCEEEEEecC--CCeEEEEEeCCeEEEEeC-CCCe--eccccCCCccccccCeEEEEEeC--CceEEE
Q 005559 76 VLISETVWKNPGGRLIGMSWSE--DQTLICVVQDGTVYRYNI-HAEL--IEPNASMGKECFEENVVECVFWG--NGVVCV 148 (691)
Q Consensus 76 ~ll~si~~~~~~~~Iv~~~fs~--de~Lv~v~~DGtV~ly~~-~G~~--~~~sl~~~~~~~~~~V~~~~~~~--~G~vll 148 (691)
.+|-++..|. +.=.++.||| .|.|+++.--+.+++|.+ .|.- -+..|..| ...|-+..-++ +|++.-
T Consensus 202 ~Pl~t~~ghk--~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH----~~SVEDLqWSptE~~vfaS 275 (440)
T KOG0302|consen 202 RPLFTFNGHK--GEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH----TKSVEDLQWSPTEDGVFAS 275 (440)
T ss_pred CceEEecccC--ccceeeecccccccccccCccccceEeeeeccCceeecCcccccc----ccchhhhccCCccCceEEe
Confidence 4677788887 7889999999 677886666667999966 3543 23344445 34566666554 565554
Q ss_pred ecCCeEEEEecCC-CceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc--------cccCCCe
Q 005559 149 TEANRYFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDTLS 219 (691)
Q Consensus 149 t~~~~~~~v~n~~-~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~--------~~~~~~i 219 (691)
.+-..-+.||++. +|+.-.+. .+.+.+.-+|| +|+-.-..++..+.||++.+||....+ .-|.+||
T Consensus 276 cS~DgsIrIWDiRs~~~~~~~~---~kAh~sDVNVI--SWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPKKAAVS---TKAHNSDVNVI--SWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred eecCceEEEEEecCCCccceeE---eeccCCceeeE--EccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 4445566777765 22211111 01334455666 365555567777789999999988443 4588999
Q ss_pred eEEEECCCCC-EEEEEeeCCeEEEEecC
Q 005559 220 QKMAVSPNGN-FVACFTHDGRLVVNNTN 246 (691)
Q Consensus 220 ~~Ia~SpnG~-~IAl~t~dg~i~I~ssd 246 (691)
+.|.++|+-. .||..+.|.+|.||.-.
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEEee
Confidence 9999999764 57777788999888654
No 205
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.82 E-value=0.00076 Score=69.74 Aligned_cols=206 Identities=15% Similarity=0.089 Sum_probs=128.6
Q ss_pred CCCeEEEEcC--CCce--eEEEEec-CC--CCCEEEEEecCC-C-eEEEEEeCCeEEEEeCCCC-eeccccCCCcccccc
Q 005559 64 ALRKLRIFNS--AGVL--ISETVWK-NP--GGRLIGMSWSED-Q-TLICVVQDGTVYRYNIHAE-LIEPNASMGKECFEE 133 (691)
Q Consensus 64 ~~~~I~Iys~--sG~l--l~si~~~-~~--~~~Iv~~~fs~d-e-~Lv~v~~DGtV~ly~~~G~-~~~~sl~~~~~~~~~ 133 (691)
.+..|++|+. -|.- .-+...+ .. .|-|-++.|+|- . .+.+.+--.++-||+.+|. .+. .++.+ ++
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~-llggh----~g 251 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ-LLGGH----GG 251 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee-eeccc----CC
Confidence 5788999986 3532 2222222 11 167899999994 4 3678888999999988754 455 66666 68
Q ss_pred CeEEEEEeCCceEEEecCCe--EEEEecCCCce--EEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecC
Q 005559 134 NVVECVFWGNGVVCVTEANR--YFCMADFATMK--VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED 209 (691)
Q Consensus 134 ~V~~~~~~~~G~vllt~~~~--~~~v~n~~~~~--~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~ 209 (691)
+|...++.++|--+.++... -...|++...+ ++.|...--.......- +..|+++.++..+.+|.|.+||..
T Consensus 252 GvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~F----Dld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 252 GVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILF----DLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred CeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEE----ecCCCCceeeccCCCccEEEEecC
Confidence 99999999999888887753 44556654211 22221100001122222 233688888888899999999998
Q ss_pred Ccc------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC-CCCceeeccCCCCCCCCeEEEecCceEEEEEcC
Q 005559 210 GVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSPVIDESCESALPPEQIAWCGMDSVLLYWND 279 (691)
Q Consensus 210 ~~~------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd-~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~ 279 (691)
+-- ..+..-+..+++.|-=.++|+.+.. .++-..+| -.+...|........-.|+-||+..++++-|++
T Consensus 328 ~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq-r~f~~~~dD~ge~~~el~~~ad~n~~qlw~~y~~a~~~w~d~ 403 (406)
T KOG2919|consen 328 DLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ-RIFKYPKDDNGELETELEEEADENEKQLWTGYVSALQVWMDG 403 (406)
T ss_pred CCCCcccccccccccccceecCcccceeeeccCc-eeecCCCcccccccccccchhhhhhhheeeeecccceeeecC
Confidence 522 3456668899999997777776543 33333333 222222222222345578999988888766653
No 206
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.81 E-value=0.0018 Score=72.53 Aligned_cols=171 Identities=14% Similarity=0.109 Sum_probs=99.4
Q ss_pred CCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-E-E--EEEeCCe--EEEEeCCCCeeccccCCCccccccCeEEE
Q 005559 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-L-I--CVVQDGT--VYRYNIHAELIEPNASMGKECFEENVVEC 138 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-L-v--~v~~DGt--V~ly~~~G~~~~~sl~~~~~~~~~~V~~~ 138 (691)
...|.+.+.+|.-...+.-.. +....=.|||||+ + + +-..+|. |.+.++.|.-.+ .+... .......
T Consensus 164 ~~~l~~~d~dG~~~~~lt~~~--~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~----~g~~~~p 236 (428)
T PRK01029 164 QGELWSVDYDGQNLRPLTQEH--SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILAL----QGNQLMP 236 (428)
T ss_pred cceEEEEcCCCCCceEcccCC--CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecC----CCCccce
Confidence 457888899998776666544 5677779999986 3 2 3444555 555587643222 11111 1223456
Q ss_pred EEeCCceEE-EecC----CeEEEE-ecCCC---ceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEe-CC--eEEEE
Q 005559 139 VFWGNGVVC-VTEA----NRYFCM-ADFAT---MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DA--GILML 206 (691)
Q Consensus 139 ~~~~~G~vl-lt~~----~~~~~v-~n~~~---~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~-d~--ti~l~ 206 (691)
+++++|.-+ .+.+ .++|.. ++... ....++.... ... ...|.|||||+.+++.+. ++ .||++
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~---~~~---~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA---FGT---QGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC---CCC---cCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 788999444 3332 245443 34332 2233343210 011 123578899999888875 33 57777
Q ss_pred ecCC--c-c-cc--cCCCeeEEEECCCCCEEEEEeeC---CeEEEEecCCC
Q 005559 207 DEDG--V-Q-KV--DDTLSQKMAVSPNGNFVACFTHD---GRLVVNNTNFS 248 (691)
Q Consensus 207 d~~~--~-~-~~--~~~~i~~Ia~SpnG~~IAl~t~d---g~i~I~ssd~~ 248 (691)
+.++ . . .+ ..+.+...++||||+.||+.+.+ ..|++++.+-+
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 6642 1 1 22 33456788999999999988654 36778765533
No 207
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=0.0045 Score=71.47 Aligned_cols=257 Identities=14% Similarity=0.131 Sum_probs=158.8
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC-----ceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCC
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-----VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDG 108 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-----~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DG 108 (691)
...+++||+|..+|.+- .++.|.+|+..| .-...+.||. ..|.++.|++||. |++++..|
T Consensus 208 ~t~~~~spn~~~~Aa~d------------~dGrI~vw~d~~~~~~~~t~t~lHWH~--~~V~~L~fS~~G~~LlSGG~E~ 273 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGD------------SDGRILVWRDFGSSDDSETCTLLHWHH--DEVNSLSFSSDGAYLLSGGREG 273 (792)
T ss_pred ceeEEeccccceEEEec------------cCCcEEEEeccccccccccceEEEecc--cccceeEEecCCceEeecccce
Confidence 35699999999999884 578899999988 3466789998 8999999999988 67999999
Q ss_pred eEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCc--eEEEecCCeEEEEecCCCceEEEcCCC--C---cC----CC
Q 005559 109 TVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNG--VVCVTEANRYFCMADFATMKVCELARP--E---VE----EL 176 (691)
Q Consensus 109 tV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G--~vllt~~~~~~~v~n~~~~~~~~l~~~--~---l~----~~ 176 (691)
...+|.+. |+ .+ .++.- ...|..+.++++| ..+..+++.+..+.-.+-.....+..+ + .. ..
T Consensus 274 VLv~Wq~~T~~-kq-fLPRL----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 274 VLVLWQLETGK-KQ-FLPRL----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSL 347 (792)
T ss_pred EEEEEeecCCC-cc-ccccc----CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccccc
Confidence 99999773 44 33 44332 2458999999866 566778888877754331111112111 1 00 11
Q ss_pred CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCc-----------c----c-ccCCCeeEEEECCCCCEEEEEee----
Q 005559 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV-----------Q----K-VDDTLSQKMAVSPNGNFVACFTH---- 236 (691)
Q Consensus 177 ~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~-----------~----~-~~~~~i~~Ia~SpnG~~IAl~t~---- 236 (691)
+...++ +|.-+..++-+..++|..+|.-.. . . ...-++++++.|-+|.++|++-.
T Consensus 348 ~t~~~i-----dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~ 422 (792)
T KOG1963|consen 348 TTGVSI-----DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDK 422 (792)
T ss_pred ceeEEE-----cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehh
Confidence 333333 233344555555555555544321 1 1 23456889999999999999743
Q ss_pred ----CC--eEEEEecCCCCc--ee--ecc-CCCC--------CCCC--eEEEecCceEEEEEcC-------------eEE
Q 005559 237 ----DG--RLVVNNTNFSSP--VI--DES-CESA--------LPPE--QIAWCGMDSVLLYWND-------------MLV 282 (691)
Q Consensus 237 ----dg--~i~I~ssd~~~~--l~--e~d-~~~~--------~~p~--q~~WCG~davvl~~~~-------------~l~ 282 (691)
+| .++.|..+-... .+ +.+ .|.. .++. ...--|.|+++..|.- .-.
T Consensus 423 ~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~ 502 (792)
T KOG1963|consen 423 FNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCK 502 (792)
T ss_pred hhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEe
Confidence 33 344565432222 11 111 1110 0111 1222378888888831 345
Q ss_pred EEcCCC----CceEeecCCCeEEeecCCceEEEecCcc
Q 005559 283 MVAPQA----EPVQYFYDEPLVLIPECDGVRILSNSSM 316 (691)
Q Consensus 283 liGp~~----~~v~f~~d~~~~l~~E~DGvRIit~~~~ 316 (691)
.+|.+. ...-|+-||.++.++=-|-|-||...+.
T Consensus 503 ~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 503 AIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred eeeccccCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence 677542 2566777787777777777999998874
No 208
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=5.6e-05 Score=84.90 Aligned_cols=163 Identities=10% Similarity=0.056 Sum_probs=117.1
Q ss_pred ccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEE
Q 005559 62 ESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 62 ~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
.+.+++|++|+. .|+.+.++.+|. .++.++.|.|-++. ...+.|+-.++||..-+=..+.+..| ...|.-.+
T Consensus 88 gsasgtiK~wDleeAk~vrtLtgh~--~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~----~~vv~~l~ 161 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTLTGHL--LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH----TRVVDVLR 161 (825)
T ss_pred cccCCceeeeehhhhhhhhhhhccc--cCcceeeeccceEEeccccccccceehhhhccCceeeecCC----cceeEEEe
Confidence 357999999997 799999999998 78999999999886 57999999999988522223366655 23355558
Q ss_pred EeCCceEEEecCC-eEEEEecCC-CceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----
Q 005559 140 FWGNGVVCVTEAN-RYFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----- 212 (691)
Q Consensus 140 ~~~~G~vllt~~~-~~~~v~n~~-~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----- 212 (691)
|.|+|-.+..++. +...+||.. +.....|+. +.-.+..++|.|..-.+...+.|.++..||.....
T Consensus 162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~-------~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~ 234 (825)
T KOG0267|consen 162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS-------HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSG 234 (825)
T ss_pred ecCCCceeeccCCcceeeeeccccccccccccc-------ccccccccccCchhhhhccCCCCceeeeeccceeEEeecc
Confidence 9999977777665 788998864 222223321 11123333565666666667778999999998444
Q ss_pred cccCCCeeEEEECCCCCEEEEEeeC
Q 005559 213 KVDDTLSQKMAVSPNGNFVACFTHD 237 (691)
Q Consensus 213 ~~~~~~i~~Ia~SpnG~~IAl~t~d 237 (691)
.....+|...+|+|+|+.++++-+.
T Consensus 235 ~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CCccCCceeeeecCCceeeecCchh
Confidence 3346778999999999887776543
No 209
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.76 E-value=0.00088 Score=71.14 Aligned_cols=194 Identities=17% Similarity=0.262 Sum_probs=117.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC--------C-----c----eeEEEEecCCCCCEEEEEec
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA--------G-----V----LISETVWKNPGGRLIGMSWS 96 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s--------G-----~----ll~si~~~~~~~~Iv~~~fs 96 (691)
....|.++|+|..+|...|. +.|.+|-.. + + ....+..|. ..|+++.|+
T Consensus 67 aVN~vRf~p~gelLASg~D~------------g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~--~diydL~Ws 132 (434)
T KOG1009|consen 67 AVNVVRFSPDGELLASGGDG------------GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR--DDIYDLAWS 132 (434)
T ss_pred eeEEEEEcCCcCeeeecCCC------------ceEEEEEecCcCCccccchhhhCccceEEEEEecccc--cchhhhhcc
Confidence 34588999999999998764 555555433 4 2 122344455 689999999
Q ss_pred CCCeE-EEEEeCCeEEEEeCC-CCeeccccCCCc--------------------cc------------------------
Q 005559 97 EDQTL-ICVVQDGTVYRYNIH-AELIEPNASMGK--------------------EC------------------------ 130 (691)
Q Consensus 97 ~de~L-v~v~~DGtV~ly~~~-G~~~~~sl~~~~--------------------~~------------------------ 130 (691)
||+.. ++.+-|.++++||.. |++.. .+..+. ..
T Consensus 133 ~d~~~l~s~s~dns~~l~Dv~~G~l~~-~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 133 PDSNFLVSGSVDNSVRLWDVHAGQLLA-ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred CCCceeeeeeccceEEEEEeccceeEe-eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 99995 688999999999984 66554 222110 00
Q ss_pred ----cccCeE-------------EEEEeCCceEEEecCCeEEEEecC--------CCc---e-EEEcCCCCcCCCCceEE
Q 005559 131 ----FEENVV-------------ECVFWGNGVVCVTEANRYFCMADF--------ATM---K-VCELARPEVEELPHCVA 181 (691)
Q Consensus 131 ----~~~~V~-------------~~~~~~~G~vllt~~~~~~~v~n~--------~~~---~-~~~l~~~~l~~~~~~w~ 181 (691)
.++.+. ..+|.++|..++|.++-+-.=.++ ... + .-+++.+. .| ..+
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~-~la 287 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KP-ALA 287 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cc-eEE
Confidence 000000 345568898888877632111111 000 0 11111110 01 111
Q ss_pred E--------ecCC------cCCCCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEeeCCeEE
Q 005559 182 V--------IEPK------YTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLV 241 (691)
Q Consensus 182 v--------i~~~------~S~d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~ 241 (691)
| +.|- |+.--...+.++..+.||++|.+.+. ..|-.+++.+++|+||..++.-+.||..-
T Consensus 288 vr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 288 VRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred EEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence 1 0110 11122456777888889999988654 56889999999999999999999999776
Q ss_pred EEecC
Q 005559 242 VNNTN 246 (691)
Q Consensus 242 I~ssd 246 (691)
.++-.
T Consensus 368 ~vtfe 372 (434)
T KOG1009|consen 368 LVTFE 372 (434)
T ss_pred EEEEc
Confidence 65433
No 210
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.72 E-value=0.00039 Score=73.74 Aligned_cols=161 Identities=12% Similarity=0.124 Sum_probs=108.5
Q ss_pred eEEEEecCCCCCEEEEEecCCC--eEEEEEeCCeEEEEeC----CCC------eeccccCCCccccccCeEEEEEeCCce
Q 005559 78 ISETVWKNPGGRLIGMSWSEDQ--TLICVVQDGTVYRYNI----HAE------LIEPNASMGKECFEENVVECVFWGNGV 145 (691)
Q Consensus 78 l~si~~~~~~~~Iv~~~fs~de--~Lv~v~~DGtV~ly~~----~G~------~~~~sl~~~~~~~~~~V~~~~~~~~G~ 145 (691)
.-+|.||.. .++..+.|-++. .|.+++.|..||+|-. .|+ +.. +++.| +..|..++|.++|-
T Consensus 5 ~~ei~wH~~-~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s-~Ls~H----~~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 5 PIEISWHDH-EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLS-SLSRH----TRAVNVVRFSPDGE 78 (434)
T ss_pred eeEEEecCC-CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEee-cccCC----cceeEEEEEcCCcC
Confidence 346889863 689999998864 4789999999999933 222 233 66667 56799999999999
Q ss_pred EEEecC-CeEEEEecCCCceEEEcCCCCcCCCCceEE-----------EecCCcCCCCCeEEEEEeCCeEEEEecCCcc-
Q 005559 146 VCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVA-----------VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ- 212 (691)
Q Consensus 146 vllt~~-~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~-----------vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~- 212 (691)
.++++. +..+.+|-....++. -.+-+....+..|- +..-.+++++...+..+.|+++++||...-+
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~-~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIF-DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL 157 (434)
T ss_pred eeeecCCCceEEEEEecCcCCc-cccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee
Confidence 999976 344444433211110 00000001122232 2223467899999999999999999988433
Q ss_pred ----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 213 ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 213 ----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
..|..-+..+++-|-++++|..+.|...++.+.
T Consensus 158 ~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 158 LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred EeeccccccccceeecchhhhhhhhhccCcccceeee
Confidence 356677899999999999999988764444433
No 211
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.72 E-value=0.0055 Score=74.68 Aligned_cols=232 Identities=19% Similarity=0.193 Sum_probs=124.3
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccC-CCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeC----CeEE
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESA-LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQD----GTVY 111 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~-~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~D----GtV~ 111 (691)
.++-=.||...|+..-. .... .+.|+||+..|.+.++-.--. |-=..++|.|.|.|+...+- -.|.
T Consensus 214 ~ISWRGDG~yFAVss~~-------~~~~~~R~iRVy~ReG~L~stSE~v~--gLe~~l~WrPsG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVE-------PETGSRRVIRVYSREGELQSTSEPVD--GLEGALSWRPSGNLIASSQRLPDRHDVV 284 (928)
T ss_pred EEEECCCCcEEEEEEEE-------cCCCceeEEEEECCCceEEeccccCC--CccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence 45555677777776521 1122 689999999999888766222 45567899999999755543 5577
Q ss_pred EEeCCCCe-eccccCCCccccccCeEEEEEeCCceEEEecCC---eEEEEecCCCceEEEc--CCC-C---cC---CCCc
Q 005559 112 RYNIHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEAN---RYFCMADFATMKVCEL--ARP-E---VE---ELPH 178 (691)
Q Consensus 112 ly~~~G~~-~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~---~~~~v~n~~~~~~~~l--~~~-~---l~---~~~~ 178 (691)
+|-.+|-. -+|.++...+ +..|.......+|-+++.--. ++|...|..-.....+ +.. . +. +.|.
T Consensus 285 FfErNGLrhgeF~l~~~~~--~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 285 FFERNGLRHGEFTLRFDPE--EEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred EEecCCcEeeeEecCCCCC--CceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 77665532 1233332111 456777665557765554332 3444444331111111 110 0 00 1122
Q ss_pred eEEEecC-----------------CcCCCCCeEEEEEeCCeEEEEecCCcc---------cccCCCeeEEEECCCCCEEE
Q 005559 179 CVAVIEP-----------------KYTMTGSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKMAVSPNGNFVA 232 (691)
Q Consensus 179 ~w~vi~~-----------------~~S~d~~~~vl~s~d~ti~l~d~~~~~---------~~~~~~i~~Ia~SpnG~~IA 232 (691)
...++.. ..+++..-.|.+-.+.++++-...... -.-..++..++|||++..+|
T Consensus 363 ~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a 442 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA 442 (928)
T ss_pred EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE
Confidence 2222110 011111111222222233332222111 02457899999999999899
Q ss_pred EEeeCCeEEEEecCCCCce--------eeccC---------CCCCCCCeEEEecCceEEEEEcC
Q 005559 233 CFTHDGRLVVNNTNFSSPV--------IDESC---------ESALPPEQIAWCGMDSVLLYWND 279 (691)
Q Consensus 233 l~t~dg~i~I~ssd~~~~l--------~e~d~---------~~~~~p~q~~WCG~davvl~~~~ 279 (691)
.++.||++.++..++.... .++.. .....+.++.|++++.+++.+..
T Consensus 443 vl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (928)
T PF04762_consen 443 VLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDS 506 (928)
T ss_pred EEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEec
Confidence 9999999998875543211 12211 12345789999999987766543
No 212
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=97.72 E-value=0.0052 Score=67.96 Aligned_cols=209 Identities=10% Similarity=0.084 Sum_probs=133.6
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCC--CeEEEEEeCCeEEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSED--QTLICVVQDGTVYR 112 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~d--e~Lv~v~~DGtV~l 112 (691)
...+.+||+|..+-.++ ..+|.|++|+.+- +--.+.-|-. ..++.+.--.| .+.|.+..|.+|-+
T Consensus 54 st~ik~s~DGqY~lAtG-----------~YKP~ikvydlan-LSLKFERhlD-ae~V~feiLsDD~SK~v~L~~DR~Ief 120 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATG-----------TYKPQIKVYDLAN-LSLKFERHLD-AEVVDFEILSDDYSKSVFLQNDRTIEF 120 (703)
T ss_pred cceeEecCCCcEEEEec-----------ccCCceEEEEccc-ceeeeeeccc-ccceeEEEeccchhhheEeecCceeee
Confidence 35889999999986665 4799999999763 2222332321 35666655433 35788999999998
Q ss_pred EeCCCCeeccccCCCccccccCeEEEEE--eCCceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCC
Q 005559 113 YNIHAELIEPNASMGKECFEENVVECVF--WGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (691)
Q Consensus 113 y~~~G~~~~~sl~~~~~~~~~~V~~~~~--~~~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d 190 (691)
-...|.--..-++.. + .+.+. |..-+.++.++..+|.++--.+.-+..+. ...+..|+| +.++-
T Consensus 121 Hak~G~hy~~RIP~~-----G--RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~----~~~~~lN~v---~in~~ 186 (703)
T KOG2321|consen 121 HAKYGRHYRTRIPKF-----G--RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE----TDSGELNVV---SINEE 186 (703)
T ss_pred hhhcCeeeeeecCcC-----C--ccccccCCCccEEEeecCcceEEEEccccccccccc----cccccceee---eecCc
Confidence 877775432222211 0 11122 34455566666678887432232222221 122445555 44566
Q ss_pred CCeEEEEEeCCeEEEEecCCcc-----------cccCCC-----eeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeec
Q 005559 191 GSVEVLIGTDAGILMLDEDGVQ-----------KVDDTL-----SQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDE 254 (691)
Q Consensus 191 ~~~~vl~s~d~ti~l~d~~~~~-----------~~~~~~-----i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~ 254 (691)
.++++....+|.|-.||..... ..+++. |+.++|+-||-.+|.+|.+|.+.|++.--++.+..=
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK 266 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec
Confidence 7778888889999999988443 112333 999999999999999999999999987656666544
Q ss_pred cCCCCCCCCeEEEecC
Q 005559 255 SCESALPPEQIAWCGM 270 (691)
Q Consensus 255 d~~~~~~p~q~~WCG~ 270 (691)
|-....+...+.|-..
T Consensus 267 dh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 267 DHGYELPIKKLDWQDT 282 (703)
T ss_pred ccCCccceeeeccccc
Confidence 4333556778999633
No 213
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=0.0041 Score=62.22 Aligned_cols=168 Identities=14% Similarity=0.140 Sum_probs=108.9
Q ss_pred EEEEEecCCCe-EEEEEeCCeEEEEeCC----------CCeeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEE-
Q 005559 90 LIGMSWSEDQT-LICVVQDGTVYRYNIH----------AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCM- 157 (691)
Q Consensus 90 Iv~~~fs~de~-Lv~v~~DGtV~ly~~~----------G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v- 157 (691)
|..=+|+|..+ |+++..+|++.+.++. |+..-+.+..+ +..|.+.+|. +-..+..+++.++-+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqah----dgpiy~~~f~-d~~Lls~gdG~V~gw~ 87 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAH----DGPIYYLAFH-DDFLLSGGDGLVYGWE 87 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecccc----CCCeeeeeee-hhheeeccCceEEEee
Confidence 55557899888 5688899999999774 33322233344 6778888887 444455566766644
Q ss_pred ecCC-----CceEEEcCCCCcC---CCC--ceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEE
Q 005559 158 ADFA-----TMKVCELARPEVE---ELP--HCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKM 222 (691)
Q Consensus 158 ~n~~-----~~~~~~l~~~~l~---~~~--~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~I 222 (691)
|+-. ..++|++..|-.. +.| ..+.+. |..+.+++++-|+.+|.||...-. +.|..-++.+
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ld-----P~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLD-----PSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV 162 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEec-----cCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee
Confidence 4422 1234444433211 223 444443 456667888899999999977443 5788889888
Q ss_pred EE-CCCCCEEEEEeeCCeEEEEecCCCCc---eeeccCCCCCCCCeEEEe
Q 005559 223 AV-SPNGNFVACFTHDGRLVVNNTNFSSP---VIDESCESALPPEQIAWC 268 (691)
Q Consensus 223 a~-SpnG~~IAl~t~dg~i~I~ssd~~~~---l~e~d~~~~~~p~q~~WC 268 (691)
+- +.+| .|-++++||+++||+..-.+. +--|+-..-.+|.--.|.
T Consensus 163 v~R~~~~-qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 163 VGRNANG-QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred eecccCc-ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence 87 7777 577889999999998865544 334554445567665664
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=0.0022 Score=67.39 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=112.7
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeC
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI 115 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~ 115 (691)
..+..++|+.++.++ ..+..|.||+.+-..-.-++|... |.+--+-||||++ |.+++-|++.++|+.
T Consensus 200 smqwn~dgt~l~tAS-----------~gsssi~iWdpdtg~~~pL~~~gl-gg~slLkwSPdgd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 200 SMQWNEDGTILVTAS-----------FGSSSIMIWDPDTGQKIPLIPKGL-GGFSLLKWSPDGDVLFAATCDAVFRLWQE 267 (445)
T ss_pred EEEEcCCCCEEeecc-----------cCcceEEEEcCCCCCcccccccCC-CceeeEEEcCCCCEEEEecccceeeeehh
Confidence 456677788887775 358899999987544445556664 6788899999988 679999999999966
Q ss_pred CCCe--eccccCCCccccccCeEEEEEeCCceEEE-ecC--CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCC
Q 005559 116 HAEL--IEPNASMGKECFEENVVECVFWGNGVVCV-TEA--NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMT 190 (691)
Q Consensus 116 ~G~~--~~~sl~~~~~~~~~~V~~~~~~~~G~vll-t~~--~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d 190 (691)
.-.. .+-.++ .+.|..+.-.+.|-.++ +.. -.+|.+.-...+.. +. .....|.+..
T Consensus 268 ~q~wt~erw~lg------sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~--~~-----~~~~~k~~ll------ 328 (445)
T KOG2139|consen 268 NQSWTKERWILG------SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSV--FL-----RPQSIKRVLL------ 328 (445)
T ss_pred cccceecceecc------CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCcc--cc-----Ccccceeeee------
Confidence 4332 222333 34577765556775443 222 34554432111100 00 1124444422
Q ss_pred CCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeE
Q 005559 191 GSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQI 265 (691)
Q Consensus 191 ~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~ 265 (691)
+.|..++. ..--|+...|+.-|.|.++|..-. |+=.| -++.-.+..||+. .++|..+
T Consensus 329 --------------iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK-g~~~v--~~~k~~i~~fdtr-~sp~vel 390 (445)
T KOG2139|consen 329 --------------IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK-GQSFV--LLCKLHISRFDTR-KSPPVEL 390 (445)
T ss_pred --------------eccchhhhhhcCcccccCccceeeECCCCCEEEEEEc-CCchh--hhhhhhhhhhccc-ccCceEE
Confidence 11222111 334578899999999999998643 22211 1335556678876 5688888
Q ss_pred EEecCc
Q 005559 266 AWCGMD 271 (691)
Q Consensus 266 ~WCG~d 271 (691)
.-||.+
T Consensus 391 s~cg~i 396 (445)
T KOG2139|consen 391 SYCGMI 396 (445)
T ss_pred Eecccc
Confidence 888854
No 215
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.70 E-value=0.013 Score=71.50 Aligned_cols=149 Identities=14% Similarity=0.233 Sum_probs=89.9
Q ss_pred CCEEEEEecCCCeE-EEEEeCCeEEEEeCCCCee-----------------------ccccCCCcccc-------c----
Q 005559 88 GRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAELI-----------------------EPNASMGKECF-------E---- 132 (691)
Q Consensus 88 ~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G~~~-----------------------~~sl~~~~~~~-------~---- 132 (691)
+.|.++.||||++| ++++.+|++.+-+-+-+.+ ++.|.+. +.+ +
T Consensus 121 ~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs-~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 121 SGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGS-AGKAAARQLRDPTVP 199 (928)
T ss_pred CcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcc-hhhhhhhhccCCCCC
Confidence 57999999999996 5788899988774432211 0111110 000 0
Q ss_pred ----cCe----EEEEE-e-CCceEEEecC-----C--eEEEEecCCCceEEEcCCCCcC-CCCceEEEecCCcCCCCCeE
Q 005559 133 ----ENV----VECVF-W-GNGVVCVTEA-----N--RYFCMADFATMKVCELARPEVE-ELPHCVAVIEPKYTMTGSVE 194 (691)
Q Consensus 133 ----~~V----~~~~~-~-~~G~vllt~~-----~--~~~~v~n~~~~~~~~l~~~~l~-~~~~~w~vi~~~~S~d~~~~ 194 (691)
+.+ ..++| | ++|..++.+. + +.+.|++-++.. .-..++.-+ +++-+|. |+|+.+
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L-~stSE~v~gLe~~l~Wr-------PsG~lI 271 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGEL-QSTSEPVDGLEGALSWR-------PSGNLI 271 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceE-EeccccCCCccCCccCC-------CCCCEE
Confidence 111 12344 4 5775544422 2 566777765432 222222111 3345554 799988
Q ss_pred EEEEe---CCeEEEEecCCcc------c--ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 195 VLIGT---DAGILMLDEDGVQ------K--VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 195 vl~s~---d~ti~l~d~~~~~------~--~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
+..-. ...|..+..+|.. + .....+..+++|+|+..||.-..+ .|++|+..
T Consensus 272 A~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~ 333 (928)
T PF04762_consen 272 ASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRS 333 (928)
T ss_pred EEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEee
Confidence 87766 4567788888765 1 245679999999999999998755 48899764
No 216
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0059 Score=67.48 Aligned_cols=187 Identities=17% Similarity=0.246 Sum_probs=120.2
Q ss_pred cCCCeEEEEcCCCc----eeEEEEecCCCCCEEEEEecCCCe--EEEEEe-----------CCeEEEEeCCCCeeccccC
Q 005559 63 SALRKLRIFNSAGV----LISETVWKNPGGRLIGMSWSEDQT--LICVVQ-----------DGTVYRYNIHAELIEPNAS 125 (691)
Q Consensus 63 ~~~~~I~Iys~sG~----ll~si~~~~~~~~Iv~~~fs~de~--Lv~v~~-----------DGtV~ly~~~G~~~~~sl~ 125 (691)
.....++||...-. +++.-.+-. ..=+.|-|++-+. ||+++. ..++++++.+|+-....+.
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFk--adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFK--ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccc--cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 46889999998722 233323333 4678899998776 444443 3467777888776544554
Q ss_pred CCccccccCeEEEEEeCCc--eEEEecCC-eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCC-
Q 005559 126 MGKECFEENVVECVFWGNG--VVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA- 201 (691)
Q Consensus 126 ~~~~~~~~~V~~~~~~~~G--~vllt~~~-~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~- 201 (691)
. ++.|.++..+++| ++++-+=+ --+.+-|..+.-+..++ +.|..-.. |||.|..+++++.++
T Consensus 269 k-----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~-----egpRN~~~----fnp~g~ii~lAGFGNL 334 (566)
T KOG2315|consen 269 K-----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP-----EGPRNTAF----FNPHGNIILLAGFGNL 334 (566)
T ss_pred C-----CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC-----CCCccceE----ECCCCCEEEEeecCCC
Confidence 2 5789999988888 66655443 23334454444444444 23443333 889999999999865
Q ss_pred --eEEEEecCCcc---cccCCCeeEEEECCCCCEEEEEee------CCeEEEEecCCCCceeeccCCCCCCCCeEEEe
Q 005559 202 --GILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFTH------DGRLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (691)
Q Consensus 202 --ti~l~d~~~~~---~~~~~~i~~Ia~SpnG~~IAl~t~------dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC 268 (691)
.+-+||..+.. ...-..-+-..+||||+++.++|. |+-++||.-+ ++.+.+.+-.+ .-.|+.|-
T Consensus 335 ~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f~s--EL~qv~W~ 409 (566)
T KOG2315|consen 335 PGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMFKS--ELLQVEWR 409 (566)
T ss_pred CCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-CceeehhhhhH--hHhheeee
Confidence 78899988644 222222345799999999998876 5667777665 66665544332 46788886
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.67 E-value=0.0064 Score=72.57 Aligned_cols=248 Identities=11% Similarity=0.053 Sum_probs=142.6
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC------CceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCC
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA------GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDG 108 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s------G~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DG 108 (691)
.+.+.+|+|...++.+ .|++|++|+.. |.--+...|+..++++..+..-++++ +++.++||
T Consensus 1053 k~a~s~~~~s~FvsgS------------~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGS------------DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred ceeecCCCCceEEEec------------CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 3445555556666664 68999999963 33445577875556888888888766 78999999
Q ss_pred eEEEEeCCC---Cee---ccccCCCccccccCeEEEEEe----CC-ceEEEecCCeEEEEecCCCceEEEcCCCCcCCCC
Q 005559 109 TVYRYNIHA---ELI---EPNASMGKECFEENVVECVFW----GN-GVVCVTEANRYFCMADFATMKVCELARPEVEELP 177 (691)
Q Consensus 109 tV~ly~~~G---~~~---~~sl~~~~~~~~~~V~~~~~~----~~-G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~ 177 (691)
.|++.+++- +.. +-..... .+++.|+++.-+ .. +++.+|..++++.+.-......|++..++--+..
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~--~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNL--KKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred eEEEEEccccccccceeeeeecccc--cCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999997742 211 1001111 123445554432 23 6777777777665543334456666543221223
Q ss_pred ceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCC---EEEEEe--eCCeEEEEecC
Q 005559 178 HCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGN---FVACFT--HDGRLVVNNTN 246 (691)
Q Consensus 178 ~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~---~IAl~t--~dg~i~I~ssd 246 (691)
++.++ ++.++..++....|.+.+||..=.. ..+..++.+|...|-.+ .+.+++ ..+.+-+|+-.
T Consensus 1199 TSi~i-----dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1199 TSIVI-----DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred eEEEe-----cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence 44333 3567778888889999999998443 35668888888887665 222222 23445555321
Q ss_pred CCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCC--ce---EeecCCCeEEeecCCc-eEEEecCc
Q 005559 247 FSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE--PV---QYFYDEPLVLIPECDG-VRILSNSS 315 (691)
Q Consensus 247 ~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~--~v---~f~~d~~~~l~~E~DG-vRIit~~~ 315 (691)
.+.-.+..|-++++..+.|--..- ..+... .. -+.-.+.+.+.+.-|+ ||-|....
T Consensus 1274 ------------~g~~~~vl~~s~~~p~ls~~~Ps~-~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1274 ------------TGLRQTVLWASDGAPILSYALPSN-DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred ------------cCcceEEEEcCCCCcchhhhcccc-cCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 123456777777777776632111 111111 11 1111234556666665 77776654
No 218
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.64 E-value=0.013 Score=63.61 Aligned_cols=192 Identities=17% Similarity=0.220 Sum_probs=108.3
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC--CceeEEEE-e----------cCCCCCEEEEEecCCCeEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA--GVLISETV-W----------KNPGGRLIGMSWSEDQTLI 102 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s--G~ll~si~-~----------~~~~~~Iv~~~fs~de~Lv 102 (691)
+.++++|+|..+.++. -..++|.+|+.+ |.+-.... + .+...+.+.+.|+||++.+
T Consensus 90 ~~i~~~~~g~~l~van-----------y~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVAN-----------YGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp EEEEECTTSSEEEEEE-----------TTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred EEEEEecCCCEEEEEE-----------ccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 5678888888888875 147889999863 66555432 1 1222579999999999976
Q ss_pred EEEeCC--eEEEEeCCC---Ceec---cccCCCccccccCeEEEEEeCCceEE-EecC--CeEEEEecCC--CceEEEc-
Q 005559 103 CVVQDG--TVYRYNIHA---ELIE---PNASMGKECFEENVVECVFWGNGVVC-VTEA--NRYFCMADFA--TMKVCEL- 168 (691)
Q Consensus 103 ~v~~DG--tV~ly~~~G---~~~~---~sl~~~~~~~~~~V~~~~~~~~G~vl-lt~~--~~~~~v~n~~--~~~~~~l- 168 (691)
.|.+-| .|++|++.. ++.. ..++.+ .+-..+.|+++|..+ +... +.+..+ +++ ...+..+
T Consensus 159 ~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G-----~GPRh~~f~pdg~~~Yv~~e~s~~v~v~-~~~~~~g~~~~~~ 232 (345)
T PF10282_consen 159 YVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG-----SGPRHLAFSPDGKYAYVVNELSNTVSVF-DYDPSDGSLTEIQ 232 (345)
T ss_dssp EEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT-----SSEEEEEE-TTSSEEEEEETTTTEEEEE-EEETTTTEEEEEE
T ss_pred EEEecCCCEEEEEEEeCCCceEEEeeccccccC-----CCCcEEEEcCCcCEEEEecCCCCcEEEE-eecccCCceeEEE
Confidence 555433 488887743 2321 122322 456788899987443 3322 333333 222 2222222
Q ss_pred --CCCC--cCCCCceEEEecCCcCCCCCeEEEEEe-CCeEEEEecCC---cc------cccCCCeeEEEECCCCCEEEEE
Q 005559 169 --ARPE--VEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDG---VQ------KVDDTLSQKMAVSPNGNFVACF 234 (691)
Q Consensus 169 --~~~~--l~~~~~~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~~---~~------~~~~~~i~~Ia~SpnG~~IAl~ 234 (691)
+..+ .........+ .+||||..+..... .++|-+++.++ .. ......-..|++||+|++|+..
T Consensus 233 ~~~~~~~~~~~~~~~~~i---~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 233 TISTLPEGFTGENAPAEI---AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA 309 (345)
T ss_dssp EEESCETTSCSSSSEEEE---EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred EeeeccccccccCCceeE---EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence 1111 1111233333 35678886555444 56777777743 22 1122224789999999999999
Q ss_pred ee-CCeEEEEecCC
Q 005559 235 TH-DGRLVVNNTNF 247 (691)
Q Consensus 235 t~-dg~i~I~ssd~ 247 (691)
+. +++|.++..|-
T Consensus 310 ~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 310 NQDSNTVSVFDIDP 323 (345)
T ss_dssp ETTTTEEEEEEEET
T ss_pred ecCCCeEEEEEEeC
Confidence 86 47888887653
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.63 E-value=0.002 Score=69.01 Aligned_cols=194 Identities=18% Similarity=0.205 Sum_probs=134.6
Q ss_pred hhHHHHHHHHHHHcccCCCHHHHHHHHHHHh--hhchhhcCCChHHHHHHHhHhhhhhccCCCCCccccCHHHHhcCChH
Q 005559 364 ASLPKAVEACIDAAGHEFDISRQRTLLRAAS--YGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTAS 441 (691)
Q Consensus 364 ~~L~~AV~~CI~AA~~e~d~~~Qk~LL~AAs--fGk~~~~~~~~~~fv~~c~~LRVLN~lr~~~igi~lT~~Q~~~l~~~ 441 (691)
++..++-.-.+..|..+-++..-...|+.|+ |++.-...|.....-+-.+.|+.=..|.. ..+ ..|..++..
T Consensus 108 d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~y~~~k~~~f~~~~~e~q~~Ll~~Q~~Le~-~~~-----~~f~~~Sl~ 181 (319)
T PF04840_consen 108 DRFQELANLHLQEALSQKDVEEKISFLKQAQKLYSKSKNDAFEAKLIEEQIKLLEYQKELEE-KYN-----TNFVGLSLN 181 (319)
T ss_pred chHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH-Hhc-----cchhcCCHH
Confidence 4555555566666655566655555665554 33322223333323333334444444433 122 236678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhCCChhHHHHHHHHHHhhhcCCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcHHH
Q 005559 442 VLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKL 521 (691)
Q Consensus 442 ~li~rL~~r~~~~lA~~I~~~l~~~~~~Vl~hWA~~kI~~~~~~~D~~l~~~I~~kl~~~~~is~a~IA~~A~~~GR~~L 521 (691)
..|.+|+.+|++..|-+|.+-+++|..+-. |..-+.-... -.=++|.+.-..| .+.|.|.-++.+..+.|++..
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw--~lki~aLa~~-~~w~eL~~fa~sk---KsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFW--WLKIKALAEN-KDWDELEKFAKSK---KSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHH--HHHHHHHHhc-CCHHHHHHHHhCC---CCCCChHHHHHHHHHCCCHHH
Confidence 999999999999999999999999866553 5443332221 1336666655443 456999999999999999999
Q ss_pred HHHHHhcCCCCcCcccccccCCchHHHHHHHHHcCCchHHHHHHHHHHh
Q 005559 522 AAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQ 570 (691)
Q Consensus 522 A~~Ll~~E~~~~~qVplLl~~~~~~~AL~kA~~S~D~dLi~~vll~l~~ 570 (691)
|.+.+..=+. .++|.++++.|++..|.+.|.+.+|++++..+.-+...
T Consensus 256 A~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~~ 303 (319)
T PF04840_consen 256 ASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCPG 303 (319)
T ss_pred HHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 9999999776 99999999999999999999999999998776655543
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.60 E-value=0.003 Score=65.38 Aligned_cols=112 Identities=14% Similarity=0.210 Sum_probs=81.8
Q ss_pred CCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCcee---EEEEecCCCCCEEEEEecCCCeEE-EEEeCCe-EEEEeC-
Q 005559 42 PFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLI---SETVWKNPGGRLIGMSWSEDQTLI-CVVQDGT-VYRYNI- 115 (691)
Q Consensus 42 p~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll---~si~~~~~~~~Iv~~~fs~de~Lv-~v~~DGt-V~ly~~- 115 (691)
|.| +.++.....|.+....+...+.|+|-+.+-... ..|+.|. +.|-+|+-+.+|.+| +++..|| |||||.
T Consensus 136 PkG-lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 136 PKG-LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHD--SDIACVALNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred CCc-eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEccc--CceeEEEEcCCccEEEEeccCcEEEEEEEcC
Confidence 555 555554444444433334568899988877766 6788888 899999999999975 8999999 899977
Q ss_pred CCCeeccccCCCccccccCeEEEEEeCCceEEEecCC----eEEEEec
Q 005559 116 HAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN----RYFCMAD 159 (691)
Q Consensus 116 ~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~----~~~~v~n 159 (691)
.|++++ .+..+.+ ...|....|++++..++.++. |++.+.+
T Consensus 213 ~g~~l~-E~RRG~d--~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 213 DGTLLQ-ELRRGVD--RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CCcEee-eeecCCc--hheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 688877 5655544 678999999999877766554 3555443
No 221
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.0026 Score=74.71 Aligned_cols=194 Identities=15% Similarity=0.193 Sum_probs=129.2
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCC-CCEEEEEecCCC--e-EEEEEeCCe
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPG-GRLIGMSWSEDQ--T-LICVVQDGT 109 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~-~~Iv~~~fs~de--~-Lv~v~~DGt 109 (691)
-..+-++|+--.||++- .+..|+||+. .|+.+..+.-..++ .+|-+|.+-.+. . |++++.||.
T Consensus 1067 pk~~~~hpf~p~i~~ad------------~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAAD------------DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGV 1134 (1387)
T ss_pred CceeeecCCCceeEEcC------------CcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCce
Confidence 35788899988888774 3688999996 78898888765533 479999997532 2 579999999
Q ss_pred EEEE-eCC-C--C--eec--cccCCCc-cccccCeEEEEEeC--CceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCc
Q 005559 110 VYRY-NIH-A--E--LIE--PNASMGK-ECFEENVVECVFWG--NGVVCVTEANRYFCMADFATMKVCELARPEVEELPH 178 (691)
Q Consensus 110 V~ly-~~~-G--~--~~~--~sl~~~~-~~~~~~V~~~~~~~--~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~ 178 (691)
|||| |.. + + +.. ..+...- .....+ -+.=|. +|..+.|++-+++.||+.+...+ ..+++.. .-+
T Consensus 1135 IRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~--~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~--~~diP~~-s~t 1209 (1387)
T KOG1517|consen 1135 IRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG--LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQV--VADIPYG-SST 1209 (1387)
T ss_pred EEEecccccccCCceeEEeeccccccCccCCCCC--eeeehhhhCCeEEecCCeeEEEEEeccccee--EeecccC-CCc
Confidence 9999 332 2 2 221 1121110 001222 112274 99999999999999999874432 2344442 223
Q ss_pred eEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc--------cccCCC--eeEEEECCCCC-EEEEEeeCCeEEEEecC
Q 005559 179 CVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDTL--SQKMAVSPNGN-FVACFTHDGRLVVNNTN 246 (691)
Q Consensus 179 ~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~--------~~~~~~--i~~Ia~SpnG~-~IAl~t~dg~i~I~ssd 246 (691)
+-..++++ ...|++++..-.||.|.++|..-.. +.|..+ |.++++-++|- .|.+++.+|.|.+|+--
T Consensus 1210 ~vTaLS~~-~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1210 LVTALSAD-LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred cceeeccc-ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence 33444433 3456777777779999999987322 345544 99999999884 48899999999998653
No 222
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.59 E-value=0.0013 Score=67.32 Aligned_cols=175 Identities=12% Similarity=0.106 Sum_probs=102.4
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe--EEEEEeCCeEEEEeCC---CCeeccccCCCc---------
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVYRYNIH---AELIEPNASMGK--------- 128 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~--Lv~v~~DGtV~ly~~~---G~~~~~sl~~~~--------- 128 (691)
.++.|++-+. +|.--.++.+|. +.|.++.|+|..+ |.+++.||+||+||+. |-|.. +..++
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr--~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~--lD~hn~k~~p~~~~ 241 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHR--DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRV--LDQHNTKRPPILKT 241 (397)
T ss_pred CCCcEEEEeccCCcceeeecccc--CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEE--eecccCccCccccc
Confidence 5889999995 899999999999 8999999999877 4589999999999884 54321 11110
Q ss_pred -cccccCeEEEEEeCCceEEEecC-CeEEEEecCCCceEE--EcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEE
Q 005559 129 -ECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKVC--ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGIL 204 (691)
Q Consensus 129 -~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~~~~--~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~ 204 (691)
..-.+.|..+.+..+|.-+++-. .+-..+||.++.+.. .+... ......+..+.- + +.+.+..+++..+++++
T Consensus 242 n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~-~~n~~~~~~~~~-~-~~~s~vfv~~p~~~~la 318 (397)
T KOG4283|consen 242 NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPI-IHNQTTSFAVHI-Q-SMDSDVFVLFPNDGSLA 318 (397)
T ss_pred cccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccc-cccccccceEEE-e-ecccceEEEEecCCeEE
Confidence 00134455555556665544422 334455665533221 11110 101122222221 2 56777888888888888
Q ss_pred EEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 205 MLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 205 l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
+++.-+-. ..|...+.--++-||=+..-++..|+.|..|..
T Consensus 319 ll~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 319 LLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 88765322 223334444455555544444555566655543
No 223
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.57 E-value=0.019 Score=65.70 Aligned_cols=241 Identities=12% Similarity=0.098 Sum_probs=137.6
Q ss_pred eEEEEcCCCc--eeEEEEecCCCCCEEEEEecCC-CeE-EEEEeCCeEEEEeCCCCee--ccccCCCccccccCeEEEEE
Q 005559 67 KLRIFNSAGV--LISETVWKNPGGRLIGMSWSED-QTL-ICVVQDGTVYRYNIHAELI--EPNASMGKECFEENVVECVF 140 (691)
Q Consensus 67 ~I~Iys~sG~--ll~si~~~~~~~~Iv~~~fs~d-e~L-v~v~~DGtV~ly~~~G~~~--~~sl~~~~~~~~~~V~~~~~ 140 (691)
.+.||+..-. +=..+.+. ..|.++.|+|. ..| +.+..+|.|-+||..+.-. ...++....+-...|+. .+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~---s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~-vv 298 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESP---SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA-VV 298 (555)
T ss_pred eEEEEecCCCCCceEEEecC---CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE-EE
Confidence 7889986544 43334433 47999999994 555 5799999999999864322 21222111000233444 34
Q ss_pred e---CCc--eEEEecCCeE--EEEecCCCceEEEcCCCCc----C-CCCceEEEecCCcCCCCCeEEEE-EeCCeEEEEe
Q 005559 141 W---GNG--VVCVTEANRY--FCMADFATMKVCELARPEV----E-ELPHCVAVIEPKYTMTGSVEVLI-GTDAGILMLD 207 (691)
Q Consensus 141 ~---~~G--~vllt~~~~~--~~v~n~~~~~~~~l~~~~l----~-~~~~~w~vi~~~~S~d~~~~vl~-s~d~ti~l~d 207 (691)
| ..+ ++-...+|.+ |.+..+..|....+.++.. . ....+-..+ .|.+..-...++ +.+|.|+..+
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~--~F~~~~p~~FiVGTe~G~v~~~~ 376 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSL--KFEPTDPNHFIVGTEEGKVYKGC 376 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeE--eeccCCCceEEEEcCCcEEEEEe
Confidence 5 233 5555566653 3333433332222222211 0 111111111 344444444444 4477788866
Q ss_pred cCCcc-------------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC-CCCceeeccCCCCCCCCeEEEe-----
Q 005559 208 EDGVQ-------------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSPVIDESCESALPPEQIAWC----- 268 (691)
Q Consensus 208 ~~~~~-------------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd-~~~~l~e~d~~~~~~p~q~~WC----- 268 (691)
..|.. ..+.|+|..|.+||=+..+-+...|.+++||+-+ -...+..++.+. .....++||
T Consensus 377 r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~-~~v~~vaWSptrpa 455 (555)
T KOG1587|consen 377 RKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSP-DYVTDVAWSPTRPA 455 (555)
T ss_pred ccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhcc-ceeeeeEEcCcCce
Confidence 55433 3578999999999988766666669999999877 455577777553 246789998
Q ss_pred -----cCceEEEEEcCeEEEEcC---------CCCceEeecCCCeEEeecCCc-eEEEecC
Q 005559 269 -----GMDSVLLYWNDMLVMVAP---------QAEPVQYFYDEPLVLIPECDG-VRILSNS 314 (691)
Q Consensus 269 -----G~davvl~~~~~l~liGp---------~~~~v~f~~d~~~~l~~E~DG-vRIit~~ 314 (691)
..|+.+=.|+-..---|| --..+.++..+..+.+..--| +.++.-.
T Consensus 456 vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 456 VFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred EEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 336666667632222222 222455555577777777777 7766544
No 224
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.53 E-value=0.0097 Score=61.07 Aligned_cols=234 Identities=14% Similarity=0.214 Sum_probs=135.6
Q ss_pred CCEEEEEecCC-Ce-EEEEEeCCeEEEEeCCCC--eec-----cc---cCC-CccccccCeEEEEEeC--CceEEEecCC
Q 005559 88 GRLIGMSWSED-QT-LICVVQDGTVYRYNIHAE--LIE-----PN---ASM-GKECFEENVVECVFWG--NGVVCVTEAN 152 (691)
Q Consensus 88 ~~Iv~~~fs~d-e~-Lv~v~~DGtV~ly~~~G~--~~~-----~s---l~~-~~~~~~~~V~~~~~~~--~G~vllt~~~ 152 (691)
|.|-++.-.+- |+ ++++..||.+.+||++.- +.. .. ... +...-.-.|.++..+| +|++.-.+=.
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD 123 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD 123 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence 66777777664 55 478999999999998621 111 00 111 1011123455654444 8887766667
Q ss_pred eEEEEecCCCce-EEEcCCCCcCCC--CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEE
Q 005559 153 RYFCMADFATMK-VCELARPEVEEL--PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAV 224 (691)
Q Consensus 153 ~~~~v~n~~~~~-~~~l~~~~l~~~--~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~ 224 (691)
+...||+.+..+ ...|+-+ +. .+.|+-+. .+--+++....+..|.+.|...-. ..|.+.|..+.+
T Consensus 124 htlKVWDtnTlQ~a~~F~me---~~VYshamSp~a----~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFKME---GKVYSHAMSPMA----MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ceEEEeecccceeeEEeecC---ceeehhhcChhh----hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 888999876432 2223211 11 34554322 223334444447789999987433 578899999999
Q ss_pred CCCCCE-EEEEeeCCeEEEEecC-CCCceeeccCC-------------CCCCCCeEEE---------ecCceEEEEEcC-
Q 005559 225 SPNGNF-VACFTHDGRLVVNNTN-FSSPVIDESCE-------------SALPPEQIAW---------CGMDSVLLYWND- 279 (691)
Q Consensus 225 SpnG~~-IAl~t~dg~i~I~ssd-~~~~l~e~d~~-------------~~~~p~q~~W---------CG~davvl~~~~- 279 (691)
||...+ ||+++.||.+++|+.- -+-.+.-.|.+ -.++...++| ||-|.-+-.|+.
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 999987 7888999999999642 11122222211 1233456777 577777777863
Q ss_pred ----eEEEEcCCC--Cc--eEe---ecC-CCeEEeecCCceEEEecCcceeeeccchhhhh
Q 005559 280 ----MLVMVAPQA--EP--VQY---FYD-EPLVLIPECDGVRILSNSSMEFLQRVPASTEQ 328 (691)
Q Consensus 280 ----~l~liGp~~--~~--v~f---~~d-~~~~l~~E~DGvRIit~~~~efL~~Vp~~~~~ 328 (691)
.++=.||-. +. ..+ .-+ +.+++++--||+-+++--+.+|+++...+..+
T Consensus 277 ~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~ 337 (397)
T KOG4283|consen 277 SGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKR 337 (397)
T ss_pred cCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccce
Confidence 344444421 11 111 112 23445555577888887778888877666443
No 225
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.49 E-value=0.00024 Score=50.71 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=34.5
Q ss_pred CceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEe
Q 005559 75 GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN 114 (691)
Q Consensus 75 G~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~ 114 (691)
|+++.++..|. +.|.+|.|+|++. +++++.||+|++||
T Consensus 1 g~~~~~~~~h~--~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHS--SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSS--SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCC--CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 67899999998 8999999999977 57899999999997
No 226
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.42 E-value=0.0064 Score=65.63 Aligned_cols=213 Identities=12% Similarity=0.132 Sum_probs=130.8
Q ss_pred eeEEEEecCCCCCEEEEEecCCCe--EE-EEEeCCeEEEEeCCCCee---c-cccCCCccccccCeEEEEEeC--CceEE
Q 005559 77 LISETVWKNPGGRLIGMSWSEDQT--LI-CVVQDGTVYRYNIHAELI---E-PNASMGKECFEENVVECVFWG--NGVVC 147 (691)
Q Consensus 77 ll~si~~~~~~~~Iv~~~fs~de~--Lv-~v~~DGtV~ly~~~G~~~---~-~sl~~~~~~~~~~V~~~~~~~--~G~vl 147 (691)
....++.+. ++|.++.|-|.+. || ++..-|+|=+||+.++.. . +-+..+ ...|...+|++ .-.++
T Consensus 178 ~~~v~kv~~--~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h----s~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 178 ILNVAKVTD--RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH----SGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ecceeEecc--cceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC----CccccceEecCCChhhee
Confidence 344456666 8999999999765 54 677789999999964321 1 122223 35588888987 44555
Q ss_pred EecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecC--Ccc----cccCCCeeE
Q 005559 148 VTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ----KVDDTLSQK 221 (691)
Q Consensus 148 lt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~--~~~----~~~~~~i~~ 221 (691)
.++-.......++++.....+-. + .....|-- .-+|+.+....+++..=|..-+||.. +.. ..|...|..
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s--~-~~d~~~fs-~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~s 327 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLS--L-DTDNIWFS-SLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITS 327 (498)
T ss_pred eeccCceeeeeeecchhhHHHhh--c-Cccceeee-eccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccce
Confidence 55444455555665433222211 0 11222321 23677777777777775555666655 332 567789999
Q ss_pred EEECCCC-CEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCC--CceEeecCCC
Q 005559 222 MAVSPNG-NFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQA--EPVQYFYDEP 298 (691)
Q Consensus 222 Ia~SpnG-~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~--~~v~f~~d~~ 298 (691)
|++.|-. .++|+++-|+|.+||+. .+. ..+ ..| ++ ..+-|.- .+..|++++-
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~--R~l----~~K--~sp----------~l-------st~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDL--RQL----RGK--ASP----------FL-------STLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred eecCCCCchheeecccCcceeeeeh--hhh----cCC--CCc----------ce-------ecccccceeeeeEEcCCCC
Confidence 9999987 47999999999999963 111 111 112 11 1111111 2677888877
Q ss_pred eEEeecCCc-eEEEec----Ccceeeeccch
Q 005559 299 LVLIPECDG-VRILSN----SSMEFLQRVPA 324 (691)
Q Consensus 299 ~~l~~E~DG-vRIit~----~~~efL~~Vp~ 324 (691)
.++.+.-|. ||||+. ...+.+..+|-
T Consensus 383 tl~TT~~D~~IRv~dss~~sa~~~p~~~I~H 413 (498)
T KOG4328|consen 383 TLLTTCQDNEIRVFDSSCISAKDEPLGTIPH 413 (498)
T ss_pred ceEeeccCCceEEeecccccccCCccceeec
Confidence 788888888 999998 45555555543
No 227
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.38 E-value=0.034 Score=60.46 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=126.4
Q ss_pred EEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCC----C------CCEEEEE-ecC-CCeEEEEE
Q 005559 38 VACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP----G------GRLIGMS-WSE-DQTLICVV 105 (691)
Q Consensus 38 vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~----~------~~Iv~~~-fs~-de~Lv~v~ 105 (691)
--.+.+|..|.-. .-+.|.+|++.-..+.++.-.-+ . .+...+. |++ +|++++.-
T Consensus 272 R~~nsDGkrIvFq-------------~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V 338 (668)
T COG4946 272 RNANSDGKRIVFQ-------------NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV 338 (668)
T ss_pred cccCCCCcEEEEe-------------cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEE
Confidence 3456677777543 46889999998888887754310 0 0111222 555 78888877
Q ss_pred eCCeEEEEeCCCCeeccccCCCccccccCeEEEEEe--CCceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEe
Q 005559 106 QDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW--GNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVI 183 (691)
Q Consensus 106 ~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~--~~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi 183 (691)
+-|.+.+.+..+...- .+++ ..+|.-.++. ++|.++-|.+++...|-+.++....++.. ++ ...-++
T Consensus 339 SRGkaFi~~~~~~~~i-qv~~-----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~-~l---g~I~av- 407 (668)
T COG4946 339 SRGKAFIMRPWDGYSI-QVGK-----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK-DL---GNIEAV- 407 (668)
T ss_pred ecCcEEEECCCCCeeE-EcCC-----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-Cc---cceEEE-
Confidence 8899999987665533 3333 3568877776 57899999999888888888777666642 12 222333
Q ss_pred cCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCC----eEEEEecC
Q 005559 184 EPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDG----RLVVNNTN 246 (691)
Q Consensus 184 ~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg----~i~I~ssd 246 (691)
..|++|...+.+.....++++|.+.-. +...+-|+.+.+|||+++||.+-.+| .|++..-+
T Consensus 408 --~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 408 --KVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred --EEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 346788888887777889999887443 34557799999999999999987776 45666555
No 228
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.35 E-value=0.001 Score=68.84 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=96.8
Q ss_pred CCCeEEEEcCC-CceeEEEEecCCCCCEEEEEecCCCe-EE-EEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEE
Q 005559 64 ALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQT-LI-CVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVF 140 (691)
Q Consensus 64 ~~~~I~Iys~s-G~ll~si~~~~~~~~Iv~~~fs~de~-Lv-~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~ 140 (691)
.+|.|++|+.. -+--.+|.-.+ ..+.+..|||||+ ++ .-.=|-.+.+|++.-+--. .++.. ..++....|
T Consensus 69 k~~~vqvwsl~Qpew~ckIdeg~--agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~p----K~~~kg~~f 141 (447)
T KOG4497|consen 69 KDPKVQVWSLVQPEWYCKIDEGQ--AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHP----KTNVKGYAF 141 (447)
T ss_pred ccceEEEEEeecceeEEEeccCC--CcceeeeECCCcceEeeeecceeEEEEEEeccceeE-Eeccc----ccCceeEEE
Confidence 47899999963 44455566555 6899999999995 43 4555777999988533211 22222 345777889
Q ss_pred eCCceEEEecCCe----EEEEecCCCceEEEc-CCCCcCCCCceEEEecCCcCCCCCeEEEEEe--CCeEEEEecCCccc
Q 005559 141 WGNGVVCVTEANR----YFCMADFATMKVCEL-ARPEVEELPHCVAVIEPKYTMTGSVEVLIGT--DAGILMLDEDGVQK 213 (691)
Q Consensus 141 ~~~G~vllt~~~~----~~~v~n~~~~~~~~l-~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~--d~ti~l~d~~~~~~ 213 (691)
.++|....-.+.+ ++.+. .-+-|.+ .+..+.. . ....-.+||||..++.... +-.||....
T Consensus 142 ~~dg~f~ai~sRrDCkdyv~i~---~c~~W~ll~~f~~dT-~---DltgieWsPdg~~laVwd~~Leykv~aYe~----- 209 (447)
T KOG4497|consen 142 HPDGQFCAILSRRDCKDYVQIS---SCKAWILLKEFKLDT-I---DLTGIEWSPDGNWLAVWDNVLEYKVYAYER----- 209 (447)
T ss_pred CCCCceeeeeecccHHHHHHHH---hhHHHHHHHhcCCCc-c---cccCceECCCCcEEEEecchhhheeeeeee-----
Confidence 9999876665543 22221 1111222 1110100 0 0011135689988776665 444443322
Q ss_pred ccCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 214 VDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 214 ~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
.-.+..++.||.|++||.++.|+.++|.+
T Consensus 210 --~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 210 --GLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred --ccceeEEEeccccceEEeeccchhhhhhc
Confidence 12467899999999999999999887653
No 229
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.31 E-value=0.13 Score=64.02 Aligned_cols=194 Identities=11% Similarity=0.102 Sum_probs=112.2
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCC------------CCCEEEEEecCCCe-EEE
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP------------GGRLIGMSWSEDQT-LIC 103 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~------------~~~Iv~~~fs~de~-Lv~ 103 (691)
.+|+++.+|-|-++- +..+.|++|+.+|+.+..+..... .....++.+++++. |.+
T Consensus 572 gvavd~~~g~lyVaD-----------s~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 572 KLAIDLLNNRLFISD-----------SNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred eEEEECCCCeEEEEE-----------CCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 578887777666653 357889999999998877654211 12478999998876 444
Q ss_pred E-EeCCeEEEEeCCCCeeccccCCCcc------------ccccCeEEEEEeC-CceEEEecC-CeEEEEecCCCceEEEc
Q 005559 104 V-VQDGTVYRYNIHAELIEPNASMGKE------------CFEENVVECVFWG-NGVVCVTEA-NRYFCMADFATMKVCEL 168 (691)
Q Consensus 104 v-~~DGtV~ly~~~G~~~~~sl~~~~~------------~~~~~V~~~~~~~-~G~vllt~~-~~~~~v~n~~~~~~~~l 168 (691)
+ ..++.|+++|+.+....+.-+.+.. ..-..-.++.+.+ +|.++++.. ++.+.+.+..+.....+
T Consensus 641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVF 720 (1057)
T ss_pred EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 3 3457799999876655422111100 0001224677777 676666643 33333344443333333
Q ss_pred CCCC----------cC---CCCceEEEecCCcCCCCCeEEEE-EeCCeEEEEecCCcc-c--c---------------cC
Q 005559 169 ARPE----------VE---ELPHCVAVIEPKYTMTGSVEVLI-GTDAGILMLDEDGVQ-K--V---------------DD 216 (691)
Q Consensus 169 ~~~~----------l~---~~~~~w~vi~~~~S~d~~~~vl~-s~d~ti~l~d~~~~~-~--~---------------~~ 216 (691)
.... .. ..|...+ ++++|+.+.++ +.+++|..||.++.. . . ..
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIa-----vspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGIS-----LSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEE-----EeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 2100 00 2255544 45677744444 447899999876321 0 0 00
Q ss_pred --------CCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 217 --------TLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 217 --------~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
..-..|+++|+|+..+.-+.+++|++++.+
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 012488999999876666678899988765
No 230
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.0092 Score=61.77 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=95.9
Q ss_pred CEEEEEecCCCeE-EEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCC-eEEEEecCCCc-eE
Q 005559 89 RLIGMSWSEDQTL-ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATM-KV 165 (691)
Q Consensus 89 ~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~~~-~~ 165 (691)
.-.+..|++.|.+ .++..||.|.+||+.---....++.| -..|.....+++|-.++|++. ....+|++-.+ .+
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH----~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAH----VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcc----ccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 3667889999885 68999999999998522233356666 345777776789999999885 46677777533 23
Q ss_pred EE--cCCCCcCCCCceEEEecCCcCCCCCeEEEEE-eCCeEEEEecC-Ccc---c-ccC----CCeeEEEECCCCCEEEE
Q 005559 166 CE--LARPEVEELPHCVAVIEPKYTMTGSVEVLIG-TDAGILMLDED-GVQ---K-VDD----TLSQKMAVSPNGNFVAC 233 (691)
Q Consensus 166 ~~--l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s-~d~ti~l~d~~-~~~---~-~~~----~~i~~Ia~SpnG~~IAl 233 (691)
.+ |+. ..|.+ +|.|-....+++. .+..-++++.+ ... . ... ..-.+..|.+.|++|-+
T Consensus 101 ~rirf~s-------pv~~~---q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 101 KRIRFDS-------PVWGA---QWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred eEEEccC-------cccee---eeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE
Confidence 33 332 23433 2333222222221 12212222222 111 0 001 11123478899999999
Q ss_pred EeeCCeEEEEecCCCCceeeccCCCCCCCCeEEE
Q 005559 234 FTHDGRLVVNNTNFSSPVIDESCESALPPEQIAW 267 (691)
Q Consensus 234 ~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~W 267 (691)
+|..|.+.|+..+--++...|...+-...+|+..
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~ 204 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIV 204 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEE
Confidence 9999999999876555555554333234455444
No 231
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.27 E-value=0.014 Score=65.32 Aligned_cols=243 Identities=15% Similarity=0.216 Sum_probs=131.8
Q ss_pred CCCeEEEEcCCCceeE-------EEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCC-Ceecc--ccCCCccccc
Q 005559 64 ALRKLRIFNSAGVLIS-------ETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHA-ELIEP--NASMGKECFE 132 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~-------si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G-~~~~~--sl~~~~~~~~ 132 (691)
.++.|.+|+..-.... ....|. +.|.++.|-|.+. ||.++.|.|+++||..+ ++.-. .++ | +
T Consensus 72 E~G~i~l~dt~~~~fr~ee~~lk~~~aH~--nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G-H----~ 144 (720)
T KOG0321|consen 72 EDGGIILFDTKSIVFRLEERQLKKPLAHK--NAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG-H----T 144 (720)
T ss_pred CCCceeeecchhhhcchhhhhhccccccc--ceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc-c----c
Confidence 4677777776543222 222344 6799999999443 68899999999999964 34332 333 3 3
Q ss_pred cCeEEEEEeC-CceEEEecCCe-EEEEecCCCce-------EEEc---------CCCCcCCCCceE--------EEecCC
Q 005559 133 ENVVECVFWG-NGVVCVTEANR-YFCMADFATMK-------VCEL---------ARPEVEELPHCV--------AVIEPK 186 (691)
Q Consensus 133 ~~V~~~~~~~-~G~vllt~~~~-~~~v~n~~~~~-------~~~l---------~~~~l~~~~~~w--------~vi~~~ 186 (691)
..|-.+.|.+ |-.+++|+..+ -+.+|+..... ...+ +..++....+.| .-|..-
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv 224 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVV 224 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEE
Confidence 5677778876 55666666543 44555542110 0000 000011001111 101113
Q ss_pred cCCCCCeEEEEEe-CCeEEEEecCCcc--------c-----cc---CCCeeEEEECCCCCEEEEEeeCCeEEEEecC-CC
Q 005559 187 YTMTGSVEVLIGT-DAGILMLDEDGVQ--------K-----VD---DTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FS 248 (691)
Q Consensus 187 ~S~d~~~~vl~s~-d~ti~l~d~~~~~--------~-----~~---~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd-~~ 248 (691)
+..|..+++.++. |++|++||..... . -+ .-.+..+..-..|.++-.-..|++|+.|+.- ++
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC
Confidence 5578888888887 9999999998554 0 11 1235667777777655444449999988642 11
Q ss_pred -Cceeecc--------CCCCCCCCeEEEe--cCceEEEEEc------CeEEEEcCCCC--ceEeecC--CCeEEeecCCc
Q 005559 249 -SPVIDES--------CESALPPEQIAWC--GMDSVLLYWN------DMLVMVAPQAE--PVQYFYD--EPLVLIPECDG 307 (691)
Q Consensus 249 -~~l~e~d--------~~~~~~p~q~~WC--G~davvl~~~------~~l~liGp~~~--~v~f~~d--~~~~l~~E~DG 307 (691)
....+|. ..+...|.++.-- ..|.-+..|. ..+.+.|+.-+ +|.+-.. .+++-.+|=-+
T Consensus 305 ~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~ 384 (720)
T KOG0321|consen 305 ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFR 384 (720)
T ss_pred cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcc
Confidence 1122222 1222233322111 2444455554 34567777654 5666543 34444444345
Q ss_pred eEEEec
Q 005559 308 VRILSN 313 (691)
Q Consensus 308 vRIit~ 313 (691)
++||-.
T Consensus 385 ~kiW~l 390 (720)
T KOG0321|consen 385 VKIWRL 390 (720)
T ss_pred eEEEec
Confidence 888876
No 232
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.26 E-value=0.00084 Score=72.35 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=114.2
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEe
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~ 141 (691)
.+..+.||+..|..+.-++-+ .++..+.|-|.--| +.++..|..+.-|. .|++.. ++..+ .+.+.-.+-.
T Consensus 189 QK~y~yvYD~~GtElHClk~~---~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa-~~~t~----~G~~~vm~qN 260 (545)
T KOG1272|consen 189 QKKYVYVYDNNGTELHCLKRH---IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA-SIRTG----AGRTDVMKQN 260 (545)
T ss_pred hhceEEEecCCCcEEeehhhc---CchhhhcccchhheeeecccCCceEEEeechhhhhH-HHHcc----CCccchhhcC
Confidence 489999999999999999865 48999999998876 56888887775588 488765 43332 1223333445
Q ss_pred C-CceEEEecCCeEEEEecCC--CceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCccc----c
Q 005559 142 G-NGVVCVTEANRYFCMADFA--TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQK----V 214 (691)
Q Consensus 142 ~-~G~vllt~~~~~~~v~n~~--~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~~----~ 214 (691)
| |+++-+-.++..+.+|+-. +|....++.. +..+..+| .++|...++.+.|..+.+||...... -
T Consensus 261 P~NaVih~GhsnGtVSlWSP~skePLvKiLcH~---g~V~siAv-----~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 261 PYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR---GPVSSIAV-----DRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred CccceEEEcCCCceEEecCCCCcchHHHHHhcC---CCcceEEE-----CCCCcEEeecccccceeEeeeccccccceee
Confidence 5 6666666667788888744 4444444421 22355554 36899999999999999999986651 1
Q ss_pred cCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 215 ~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
...|...+++|-.| .||+...+ .+.||.
T Consensus 333 tp~~a~~ls~Sqkg-lLA~~~G~-~v~iw~ 360 (545)
T KOG1272|consen 333 TPHPASNLSLSQKG-LLALSYGD-HVQIWK 360 (545)
T ss_pred cCCCcccccccccc-ceeeecCC-eeeeeh
Confidence 35678899999998 67776543 566674
No 233
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.18 E-value=0.09 Score=65.38 Aligned_cols=198 Identities=14% Similarity=0.087 Sum_probs=109.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCC---------------CCCEEEEEecC-CC
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP---------------GGRLIGMSWSE-DQ 99 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~---------------~~~Iv~~~fs~-de 99 (691)
..+++.++|+.|.++- .....|+.++..+..+.++..... .....++.|+| ++
T Consensus 627 ~GIavd~~gn~LYVaD-----------t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g 695 (1057)
T PLN02919 627 QGLAYNAKKNLLYVAD-----------TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNE 695 (1057)
T ss_pred cEEEEeCCCCEEEEEe-----------CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCC
Confidence 3455555555554442 245778999888777877753210 12457899999 56
Q ss_pred eE-EEEEeCCeEEEEeCCCCeeccccCCCcc-c---------cccCeEEEEEeCCce-EEEe-cCCeEEEEecCCCceEE
Q 005559 100 TL-ICVVQDGTVYRYNIHAELIEPNASMGKE-C---------FEENVVECVFWGNGV-VCVT-EANRYFCMADFATMKVC 166 (691)
Q Consensus 100 ~L-v~v~~DGtV~ly~~~G~~~~~sl~~~~~-~---------~~~~V~~~~~~~~G~-vllt-~~~~~~~v~n~~~~~~~ 166 (691)
.+ |+-..++.|++||..+......-+.+.. . .-.....+.+.++|- ++++ ...+-+.+.+.++....
T Consensus 696 ~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 696 KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR 775 (1057)
T ss_pred eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 66 4556788899998853332211111100 0 001223466677663 3333 33333333444322111
Q ss_pred EcC--CC-------------C-----cCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc--c--c--------
Q 005559 167 ELA--RP-------------E-----VEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--K--V-------- 214 (691)
Q Consensus 167 ~l~--~~-------------~-----l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~--~--~-------- 214 (691)
.+. ++ . .-..|...+ ++++|.+.|.-..+++|.+|+.++.. . .
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva-----vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~d 850 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL-----CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKD 850 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceee-----EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCC
Confidence 110 00 0 001355444 35688877777779999999986443 0 0
Q ss_pred ------cCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCC
Q 005559 215 ------DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS 249 (691)
Q Consensus 215 ------~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~ 249 (691)
....-..|+++|+|+.+..=+.+++|++++.+-.+
T Consensus 851 G~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 851 GKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 01135689999999976666678899999876443
No 234
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.081 Score=56.01 Aligned_cols=192 Identities=15% Similarity=0.213 Sum_probs=111.4
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC--CCceeEEEE--ecCC--------CCCEEEEEecCCCeEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS--AGVLISETV--WKNP--------GGRLIGMSWSEDQTLIC 103 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~--sG~ll~si~--~~~~--------~~~Iv~~~fs~de~Lv~ 103 (691)
+.|+++++|..+.++.= ..+.|.+|-. +|.+...+. -|.. ..+.+...|+|+++.++
T Consensus 92 ~yvsvd~~g~~vf~AnY-----------~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~ 160 (346)
T COG2706 92 CYVSVDEDGRFVFVANY-----------HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLV 160 (346)
T ss_pred eEEEECCCCCEEEEEEc-----------cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEE
Confidence 68888888888877751 3567777764 466544432 2220 12399999999999776
Q ss_pred EEeCCe--EEEEeC-CCCeec---cccCCCccccccCeEEEEEeCCceEEEe--cCCeEEEEecCCC--ceEEEcCCCC-
Q 005559 104 VVQDGT--VYRYNI-HAELIE---PNASMGKECFEENVVECVFWGNGVVCVT--EANRYFCMADFAT--MKVCELARPE- 172 (691)
Q Consensus 104 v~~DGt--V~ly~~-~G~~~~---~sl~~~~~~~~~~V~~~~~~~~G~vllt--~~~~~~~v~n~~~--~~~~~l~~~~- 172 (691)
+-+=|+ |.+|++ +|.+.. ..+.. -.+-.-+.|.+||.++-. +=...+.++..+. .++.++..+.
T Consensus 161 v~DLG~Dri~~y~~~dg~L~~~~~~~v~~-----G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t 235 (346)
T COG2706 161 VPDLGTDRIFLYDLDDGKLTPADPAEVKP-----GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT 235 (346)
T ss_pred EeecCCceEEEEEcccCccccccccccCC-----CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc
Confidence 555444 777777 576643 12222 245678889999976533 3344444444432 3444443211
Q ss_pred cC----CCCceEEEecCCcCCCCCeEEEEEeCC---eEEEEecCCcc------cccCCC-eeEEEECCCCCEEEEEeeC-
Q 005559 173 VE----ELPHCVAVIEPKYTMTGSVEVLIGTDA---GILMLDEDGVQ------KVDDTL-SQKMAVSPNGNFVACFTHD- 237 (691)
Q Consensus 173 l~----~~~~~w~vi~~~~S~d~~~~vl~s~d~---ti~l~d~~~~~------~~~~~~-i~~Ia~SpnG~~IAl~t~d- 237 (691)
+. +...+=+| +.|+||..+.....+. .++.++.++.. ....+. =....++|.|++|..++++
T Consensus 236 lP~dF~g~~~~aaI---his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 236 LPEDFTGTNWAAAI---HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred CccccCCCCceeEE---EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 11 11222233 4677887655444433 34445555432 122233 3568899999999888876
Q ss_pred CeEEEEecC
Q 005559 238 GRLVVNNTN 246 (691)
Q Consensus 238 g~i~I~ssd 246 (691)
++|.|+..|
T Consensus 313 d~i~vf~~d 321 (346)
T COG2706 313 DNITVFERD 321 (346)
T ss_pred CcEEEEEEc
Confidence 577777665
No 235
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=97.17 E-value=0.0022 Score=73.57 Aligned_cols=175 Identities=15% Similarity=0.071 Sum_probs=107.4
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeecccc-CCCccccccCeEEEEE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNA-SMGKECFEENVVECVF 140 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl-~~~~~~~~~~V~~~~~ 140 (691)
+.|..|++|.. +|.+++-+.+|. |.|.+++|+|-- .-+.|||+++||..-+...+.- +.... ....+....+
T Consensus 251 S~D~vIrvWrl~~~~pvsvLrght--gavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~-~~~~~~s~~~ 324 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPDGAPVSVLRGHT--GAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFT-EKDLVDSILF 324 (1113)
T ss_pred ccCceEEEEecCCCchHHHHhccc--cceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcc-cccceeeeec
Confidence 47999999995 899999999999 999999999965 7788999999999744333221 11110 1233444455
Q ss_pred eCCceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEE-EEEeCCeEEEEecCCcc-----cc
Q 005559 141 WGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEV-LIGTDAGILMLDEDGVQ-----KV 214 (691)
Q Consensus 141 ~~~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~v-l~s~d~ti~l~d~~~~~-----~~ 214 (691)
-.+|...+|++..- +...+++..... +..-++=.+++.+-+.++ +.-.+..+.+|+.-.-+ ..
T Consensus 325 ~~~~~~f~Tgs~d~-------ea~n~e~~~l~~----~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g 393 (1113)
T KOG0644|consen 325 ENNGDRFLTGSRDG-------EARNHEFEQLAW----RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG 393 (1113)
T ss_pred cccccccccccCCc-------ccccchhhHhhh----hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc
Confidence 56888777766430 111222211000 000011112332333333 33446677888766443 56
Q ss_pred cCCCeeEEEECCCCCEEEE-EeeCCeEEEEecCCCCceeec
Q 005559 215 DDTLSQKMAVSPNGNFVAC-FTHDGRLVVNNTNFSSPVIDE 254 (691)
Q Consensus 215 ~~~~i~~Ia~SpnG~~IAl-~t~dg~i~I~ssd~~~~l~e~ 254 (691)
+..++.-+-+.|=.-.||. +..||...||++-=+..+.-|
T Consensus 394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence 7788888999998777776 567899999987544444333
No 236
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.17 E-value=0.0067 Score=63.09 Aligned_cols=139 Identities=14% Similarity=0.176 Sum_probs=98.5
Q ss_pred CCCeEEEEcCCCc----eeEEEEecCCCCCEEEEEecCC---Ce--EEEEEeCCeEEEEeC-CCCeeccccCCCcccccc
Q 005559 64 ALRKLRIFNSAGV----LISETVWKNPGGRLIGMSWSED---QT--LICVVQDGTVYRYNI-HAELIEPNASMGKECFEE 133 (691)
Q Consensus 64 ~~~~I~Iys~sG~----ll~si~~~~~~~~Iv~~~fs~d---e~--Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~ 133 (691)
..+.+.||...|. ++.+..-...........|+-| ++ |++++.-|.+|+.|+ .|++...-.+++ .
T Consensus 62 G~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG-----~ 136 (385)
T KOG1034|consen 62 GGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHG-----G 136 (385)
T ss_pred CCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccC-----c
Confidence 5788999997654 4555544322257888999864 23 578889999999999 566766444555 5
Q ss_pred CeEEEEEeCCc-eEEEe-cCCeEEEEecCCCceEEEc-CCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCC
Q 005559 134 NVVECVFWGNG-VVCVT-EANRYFCMADFATMKVCEL-ARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210 (691)
Q Consensus 134 ~V~~~~~~~~G-~vllt-~~~~~~~v~n~~~~~~~~l-~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~ 210 (691)
.|.++++.|.- ..+++ +..+-+.+||+.+....-+ .. + ..|.-.|++.+||++|..++.-++|+++++|+.+.
T Consensus 137 sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--~--egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 137 SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--V--EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc--c--ccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence 69999999844 44444 5567889999987655443 32 1 12333455559999999999999999999999983
Q ss_pred c
Q 005559 211 V 211 (691)
Q Consensus 211 ~ 211 (691)
.
T Consensus 213 ~ 213 (385)
T KOG1034|consen 213 K 213 (385)
T ss_pred h
Confidence 3
No 237
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.16 E-value=0.0064 Score=64.60 Aligned_cols=135 Identities=19% Similarity=0.276 Sum_probs=83.9
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
..|++|.|||. .|.-+-++. |. +-|.+|.|+.||.+ ++...|.+||+||+. |+....- ..|.. ..=.-+.
T Consensus 151 g~Dn~v~iWnv~tgeali~l~-hp--d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG---~k~~Rai 223 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLD-HP--DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEG---AKPARAI 223 (472)
T ss_pred cCCceEEEEeccCCceeeecC-CC--CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccC---CCcceeE
Confidence 47999999996 798888888 66 89999999999885 679999999999994 7765522 22211 1223445
Q ss_pred EeCCceEEEecC----CeEEEEecCCCceEEEcCCCC-cCCCCceEEEecCCcCCCCCeEEEEEe-CCeEEEEecC
Q 005559 140 FWGNGVVCVTEA----NRYFCMADFATMKVCELARPE-VEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDED 209 (691)
Q Consensus 140 ~~~~G~vllt~~----~~~~~v~n~~~~~~~~l~~~~-l~~~~~~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~ 209 (691)
|-++|.++.|+- .+.+.+|+-+ .|..|. +.+...+--|+=|=|.+|.+++-+.+. |+.|.-+..+
T Consensus 224 fl~~g~i~tTGfsr~seRq~aLwdp~-----nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 224 FLASGKIFTTGFSRMSERQIALWDPN-----NLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred EeccCceeeeccccccccceeccCcc-----cccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 568898555532 3466666522 111110 101112223444456667776666666 5555555444
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.021 Score=64.62 Aligned_cols=242 Identities=16% Similarity=0.187 Sum_probs=136.2
Q ss_pred cCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeCCCCe
Q 005559 41 APFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAEL 119 (691)
Q Consensus 41 sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G~~ 119 (691)
..+|.-|+++- .|+.|-+=+-+|+.|+.-.... .....+-||+|.++ +....+|...+||.+|+|
T Consensus 124 n~dG~kIcIvY------------eDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF 189 (1189)
T KOG2041|consen 124 NLDGTKICIVY------------EDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNF 189 (1189)
T ss_pred cCCCcEEEEEE------------ccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccH
Confidence 35788888875 5788888888888887655443 35667889998664 689999999999999998
Q ss_pred eccccCCCcccc--------ccCeEEEEEeCCce-----------EEEecCCeEEEEecCCCceEEEcCCCCcCCCCceE
Q 005559 120 IEPNASMGKECF--------EENVVECVFWGNGV-----------VCVTEANRYFCMADFATMKVCELARPEVEELPHCV 180 (691)
Q Consensus 120 ~~~sl~~~~~~~--------~~~V~~~~~~~~G~-----------vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w 180 (691)
.. .+....++. ...|.+. -|.+|- ++.-.+|+.-.+.+.+++.+..+. ..+
T Consensus 190 ~~-Kl~~~c~Vn~tg~~s~~~~kia~i-~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--------tgm 259 (1189)
T KOG2041|consen 190 ER-KLEKDCEVNGTGIFSNFPTKIAEI-EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--------TGM 259 (1189)
T ss_pred HH-hhhhceEEeeeeeecCCCccccce-eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--------ccc
Confidence 54 222111100 0111111 133332 222233333333333333332221 235
Q ss_pred EEecCCcCCCCCeEEEEEeCC---------eEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEec--
Q 005559 181 AVIEPKYTMTGSVEVLIGTDA---------GILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT-- 245 (691)
Q Consensus 181 ~vi~~~~S~d~~~~vl~s~d~---------ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss-- 245 (691)
-++..+++++|.+.+..+.+. .|...+.-|.. +....-|+.+++-..|-.||++- |+.|.+.+.
T Consensus 260 ~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Av-dsfiyfanIRP 338 (1189)
T KOG2041|consen 260 KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAV-DSFIYFANIRP 338 (1189)
T ss_pred EeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEe-cceEEEEeecc
Confidence 666667888999888777643 23333333333 34556688888888887788765 444443322
Q ss_pred CCC--------------C-----ceeeccCCCC-------CCCCeEEEecCceEEEEEcC-----------------eEE
Q 005559 246 NFS--------------S-----PVIDESCESA-------LPPEQIAWCGMDSVLLYWND-----------------MLV 282 (691)
Q Consensus 246 d~~--------------~-----~l~e~d~~~~-------~~p~q~~WCG~davvl~~~~-----------------~l~ 282 (691)
+|. + .+.-+|+.+. .....|+.||+.||+..-.+ .+.
T Consensus 339 ~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~ 418 (1189)
T KOG2041|consen 339 EYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQ 418 (1189)
T ss_pred cceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcchhhhhcccceEEEe
Confidence 111 0 0112232211 12248889999998875432 234
Q ss_pred EEcCCCCceEeecCCCeEEeecCCc
Q 005559 283 MVAPQAEPVQYFYDEPLVLIPECDG 307 (691)
Q Consensus 283 liGp~~~~v~f~~d~~~~l~~E~DG 307 (691)
|-..-|.++.+-|....=.+.-+.|
T Consensus 419 LCNSIGT~lD~kytdirP~Fv~vn~ 443 (1189)
T KOG2041|consen 419 LCNSIGTSLDYKYTDIRPKFVCVNG 443 (1189)
T ss_pred eecccCCcCCCCcceeeeeEEEecc
Confidence 5555666787877654444445555
No 239
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.0028 Score=69.88 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=80.8
Q ss_pred CCEEEEEecC-CCeEEEEEeCCeEEEEeCC-------CCee-ccccCCCccccccCeEEEEEeCCceEEEecCC-eEEEE
Q 005559 88 GRLIGMSWSE-DQTLICVVQDGTVYRYNIH-------AELI-EPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCM 157 (691)
Q Consensus 88 ~~Iv~~~fs~-de~Lv~v~~DGtV~ly~~~-------G~~~-~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v 157 (691)
.-|..+.|-+ ...|+.++.||++++|+++ +.+. -.+|..| ++.|+.+.+..+|..+.+++- ..+..
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH----~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH----EGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc----cCceEEEEecCCceEEEeeccCceeee
Confidence 3466666766 4568999999999999993 2222 1356666 788999999999999999874 35556
Q ss_pred ecCC-------CceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc
Q 005559 158 ADFA-------TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ 212 (691)
Q Consensus 158 ~n~~-------~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~ 212 (691)
||+- +..+..+.++..++.-..|-+ .+|+..+.++..+.|+|++.|...+..
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l---~~s~~~~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLL---ALSSTKDRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeee---eecccccceeeecCCceEEeeccCCcC
Confidence 6542 112223333333233567777 477788888888889999999887654
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.06 E-value=0.039 Score=60.54 Aligned_cols=238 Identities=14% Similarity=0.152 Sum_probs=114.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCC-----CCCEEEEEecCCCe-EEE-EEeC
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNP-----GGRLIGMSWSEDQT-LIC-VVQD 107 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~-----~~~Iv~~~fs~de~-Lv~-v~~D 107 (691)
..+++||+|..+++.. -.++.+.|++. +.+++.+|+-... ..++.++..+|... .++ +-+.
T Consensus 81 ~~i~~s~DG~~~~v~n-----------~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~ 149 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVAN-----------YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT 149 (369)
T ss_dssp EEEEE--TTTEEEEEE-----------EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred ceEEEcCCCCEEEEEe-----------cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC
Confidence 4788999999998875 25799999995 7899999876421 14789999999877 444 4445
Q ss_pred CeEEEEeCCC-Ceec-cccCCCccccccCeEEEEEeCCceEEEe---cCCeEEEEecCCCceEE-EcC---CCC-c---C
Q 005559 108 GTVYRYNIHA-ELIE-PNASMGKECFEENVVECVFWGNGVVCVT---EANRYFCMADFATMKVC-ELA---RPE-V---E 174 (691)
Q Consensus 108 GtV~ly~~~G-~~~~-~sl~~~~~~~~~~V~~~~~~~~G~vllt---~~~~~~~v~n~~~~~~~-~l~---~~~-l---~ 174 (691)
|.|-+.|... +... ..+..+ ....+.-+.++|--++. .++.+..+ +..+.+.. .+. .|. . +
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~~g-----~~~~D~~~dpdgry~~va~~~sn~i~vi-D~~~~k~v~~i~~g~~p~~~~~~~ 223 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIKVG-----RFPHDGGFDPDGRYFLVAANGSNKIAVI-DTKTGKLVALIDTGKKPHPGPGAN 223 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE-------TTEEEEEE-TTSSEEEEEEGGGTEEEEE-ETTTTEEEEEEE-SSSBEETTEEE
T ss_pred CeEEEEEeccccccceeeeccc-----ccccccccCcccceeeecccccceeEEE-eeccceEEEEeecccccccccccc
Confidence 8777778743 2221 122221 23567777778843332 22334433 44333222 221 010 0 0
Q ss_pred -CCCc---eEEEecCCcCCCCCeE-EEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEE---ee-CCeE
Q 005559 175 -ELPH---CVAVIEPKYTMTGSVE-VLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACF---TH-DGRL 240 (691)
Q Consensus 175 -~~~~---~w~vi~~~~S~d~~~~-vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~---t~-dg~i 240 (691)
.+|. .|+.- ..+... -.++.+ .+.+++...-. ....++ .-|..|||++++..- +. .++|
T Consensus 224 ~php~~g~vw~~~-----~~~~~~~~~ig~~-~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v 296 (369)
T PF02239_consen 224 FPHPGFGPVWATS-----GLGYFAIPLIGTD-PVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTV 296 (369)
T ss_dssp EEETTTEEEEEEE-----BSSSSEEEEEE---TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-E
T ss_pred ccCCCcceEEeec-----cccceecccccCC-ccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceE
Confidence 1122 26542 123332 233333 33445544322 334455 788999999998887 33 3678
Q ss_pred EEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecCCCeEEeec--CCc-eEEEecCcce
Q 005559 241 VVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPE--CDG-VRILSNSSME 317 (691)
Q Consensus 241 ~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d~~~~l~~E--~DG-vRIit~~~~e 317 (691)
.|++..--+....+.......+. .+.|+.|+.-+.++. -+| |.|+...+++
T Consensus 297 ~viD~~tl~~~~~i~~~~~~~~~--------------------------h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 297 QVIDKKTLKVVKTITPGPGKRVV--------------------------HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp EEEECCGTEEEE-HHHHHT--EE--------------------------EEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred EEEECcCcceeEEEeccCCCcEe--------------------------ccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 87765322222222211101122 344444554444333 343 8889999999
Q ss_pred eeeccc
Q 005559 318 FLQRVP 323 (691)
Q Consensus 318 fL~~Vp 323 (691)
.+.++|
T Consensus 351 ~~~~i~ 356 (369)
T PF02239_consen 351 EKKRIP 356 (369)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999998
No 241
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.02 E-value=0.17 Score=51.86 Aligned_cols=190 Identities=17% Similarity=0.173 Sum_probs=118.0
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEec-CCCeEEEEEeCCeEEEEeCC-CCeeccccCC--CccccccCeEEEE
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWS-EDQTLICVVQDGTVYRYNIH-AELIEPNASM--GKECFEENVVECV 139 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs-~de~Lv~v~~DGtV~ly~~~-G~~~~~sl~~--~~~~~~~~V~~~~ 139 (691)
..+.|.-|+..+.....+.. ....++.+. +++.|+++..+|. .++|+. |+... .... +. .......++.
T Consensus 20 ~~~~i~~~~~~~~~~~~~~~----~~~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~-~~~~~~~~-~~~~~~ND~~ 92 (246)
T PF08450_consen 20 PGGRIYRVDPDTGEVEVIDL----PGPNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTV-LADLPDGG-VPFNRPNDVA 92 (246)
T ss_dssp TTTEEEEEETTTTEEEEEES----SSEEEEEEECTTSEEEEEETTCE-EEEETTTTEEEE-EEEEETTC-SCTEEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEec----CCCceEEEEccCCEEEEEEcCce-EEEecCCCcEEE-EeeccCCC-cccCCCceEE
Confidence 46889999998887766553 238888888 7888888877774 555875 54432 2111 10 0145578899
Q ss_pred EeCCceEEEecC----------CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEE-EeCCeEEEEec
Q 005559 140 FWGNGVVCVTEA----------NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLI-GTDAGILMLDE 208 (691)
Q Consensus 140 ~~~~G~vllt~~----------~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~-s~d~ti~l~d~ 208 (691)
+-++|-+.+|.. +.+|.+..- .....+.. .+ ..|...+ ||++++..... +..+.|+.++.
T Consensus 93 vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~~~~~~~-~~-~~pNGi~-----~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 93 VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GKVTVVAD-GL-GFPNGIA-----FSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp E-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SEEEEEEE-EE-SSEEEEE-----EETTSSEEEEEETTTTEEEEEEE
T ss_pred EcCCCCEEEEecCCCccccccccceEEECCC--CeEEEEec-Cc-ccccceE-----ECCcchheeecccccceeEEEec
Confidence 999998888855 346666543 22222211 01 2255554 45788766544 44778888887
Q ss_pred C--Cc-c-------cccCC--CeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCc
Q 005559 209 D--GV-Q-------KVDDT--LSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 271 (691)
Q Consensus 209 ~--~~-~-------~~~~~--~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~d 271 (691)
+ +. . ..... ..-.|++.++|++.++....+.|++++.+ ++.+.++.... ..|..++|-|.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~-~~~t~~~fgg~~ 236 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV-PRPTNCAFGGPD 236 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS-SSEEEEEEESTT
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC-CCEEEEEEECCC
Confidence 5 32 1 12222 36689999999977766678999999988 88877776542 267777776554
No 242
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.01 E-value=0.033 Score=55.91 Aligned_cols=165 Identities=12% Similarity=0.112 Sum_probs=92.9
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEe-cCCCeEEEEEeCCeEEEEeCC-CCeeccccCCCc--ccc---ccCe
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSW-SEDQTLICVVQDGTVYRYNIH-AELIEPNASMGK--ECF---EENV 135 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~f-s~de~Lv~v~~DGtV~ly~~~-G~~~~~sl~~~~--~~~---~~~V 135 (691)
.|+.|.-|+. +|+.-.++++|. +.|+++.= +.++++++.++|||||+||.. ++..+ .+.... ++. .+..
T Consensus 134 GD~~~y~~dlE~G~i~r~~rGHt--DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~-~ie~yk~~~~lRp~~g~w 210 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRGHT--DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS-MIEPYKNPNLLRPDWGKW 210 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcCCc--ceeeeeeecccCcceeecCCCccEEEEeccccceeE-EeccccChhhcCcccCce
Confidence 6899999996 899999999999 89999987 678999999999999999984 55433 222110 100 1222
Q ss_pred EEEEEeCCceEEEecCCeEEEEecCCCceEE-EcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCccc-
Q 005559 136 VECVFWGNGVVCVTEANRYFCMADFATMKVC-ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQK- 213 (691)
Q Consensus 136 ~~~~~~~~G~vllt~~~~~~~v~n~~~~~~~-~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~~- 213 (691)
+.| +-.+---++.+.+.-..+|++....+. .++-| ...+.-. | ....++..+.++.|-.|..+|...
T Consensus 211 iga-la~~edWlvCGgGp~lslwhLrsse~t~vfpip---a~v~~v~-----F--~~d~vl~~G~g~~v~~~~l~Gvl~a 279 (325)
T KOG0649|consen 211 IGA-LAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIP---ARVHLVD-----F--VDDCVLIGGEGNHVQSYTLNGVLQA 279 (325)
T ss_pred eEE-EeccCceEEecCCCceeEEeccCCCceEEEecc---cceeEee-----e--ecceEEEeccccceeeeeeccEEEE
Confidence 221 111112222333333344444322221 12211 1111111 2 334455555577788888887651
Q ss_pred -c----cCCCeeEEEECCCCCEEEEEeeCCeEEEE
Q 005559 214 -V----DDTLSQKMAVSPNGNFVACFTHDGRLVVN 243 (691)
Q Consensus 214 -~----~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ 243 (691)
. +.--......||- |+|..++.+.++.|.
T Consensus 280 ~ip~~s~~c~s~s~~~~p~-k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 280 NIPVESTACYSASWQTSPI-KFISIAGFSNKLHIL 313 (325)
T ss_pred eccCCccceeeecccCCce-EEEEecccceeeeee
Confidence 1 1111223445564 577777767777776
No 243
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.97 E-value=0.058 Score=58.74 Aligned_cols=162 Identities=16% Similarity=0.168 Sum_probs=89.5
Q ss_pred CCCeEEEEEeCCeEEEEeCCCCeec---cccCCCccccccCeEE-EE----Ee-CCceEEEe-cCCeEEEEecCCCceEE
Q 005559 97 EDQTLICVVQDGTVYRYNIHAELIE---PNASMGKECFEENVVE-CV----FW-GNGVVCVT-EANRYFCMADFATMKVC 166 (691)
Q Consensus 97 ~de~Lv~v~~DGtV~ly~~~G~~~~---~sl~~~~~~~~~~V~~-~~----~~-~~G~vllt-~~~~~~~v~n~~~~~~~ 166 (691)
.||+-++-+.-|.+.+||+.-+-++ .-++..-..++..... .+ |. -+|-.+++ +.++.+.+...+++ ..
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~-~i 354 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGY-SI 354 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCe-eE
Confidence 3778899999999999999644322 1222111111222211 11 12 14443333 33444444443333 23
Q ss_pred EcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCC-eEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEeeCCeEE
Q 005559 167 ELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA-GILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLV 241 (691)
Q Consensus 167 ~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~-ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~ 241 (691)
+++.+ ...-- .+++.++.-.|....|+ .+-+++.++.. ....|.|-+|.+|||||+++.+++.+.||
T Consensus 355 qv~~~-----~~VrY---~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 355 QVGKK-----GGVRY---RRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred EcCCC-----CceEE---EEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 33321 11111 12334555556666665 66777777655 34668899999999999999999999999
Q ss_pred EEecCCCCceeeccCCCCCCCCeEEEe
Q 005559 242 VNNTNFSSPVIDESCESALPPEQIAWC 268 (691)
Q Consensus 242 I~ssd~~~~l~e~d~~~~~~p~q~~WC 268 (691)
++..|-++.- +.|-....-...+.|.
T Consensus 427 vididngnv~-~idkS~~~lItdf~~~ 452 (668)
T COG4946 427 VIDIDNGNVR-LIDKSEYGLITDFDWH 452 (668)
T ss_pred EEEecCCCee-EecccccceeEEEEEc
Confidence 9987755442 3332222334455555
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.93 E-value=0.45 Score=52.22 Aligned_cols=249 Identities=12% Similarity=0.163 Sum_probs=125.2
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEE
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVF 140 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~ 140 (691)
.++.|.+.+. +++.+.+|+... +.-..+.||||++ +.+.+.||.|.++|+ .++... ++..+ ..-..+.+
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~--~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~-~i~~G-----~~~~~i~~ 85 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGG--APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA-TIKVG-----GNPRGIAV 85 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-ST--TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE-EEE-S-----SEEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCC--CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE-EEecC-----CCcceEEE
Confidence 4678888886 578899998643 3345578999998 567888999999999 566665 44433 22467788
Q ss_pred eCCceEEEecC---CeEEEEecCCCceEEEcCCCCcC---CCCceEEEecCCcCCCCCeEEEEEe-CCeEEEEecCCcc-
Q 005559 141 WGNGVVCVTEA---NRYFCMADFATMKVCELARPEVE---ELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ- 212 (691)
Q Consensus 141 ~~~G~vllt~~---~~~~~v~n~~~~~~~~l~~~~l~---~~~~~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~~~~- 212 (691)
+++|-.++.++ +.+..++.-.-.....++..... ..+..-+|+. |+.+...++.-. .+.|.++|.....
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~---s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA---SPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE----SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEe---cCCCCEEEEEEccCCeEEEEEeccccc
Confidence 89997766655 34555443222333344321111 1123334432 334443333333 4678888855432
Q ss_pred ----cc-cCCCeeEEEECCCCCEE-EEEeeCCeEEEEecCCCCceeeccCCCCCCC----------CeEEEe----cCce
Q 005559 213 ----KV-DDTLSQKMAVSPNGNFV-ACFTHDGRLVVNNTNFSSPVIDESCESALPP----------EQIAWC----GMDS 272 (691)
Q Consensus 213 ----~~-~~~~i~~Ia~SpnG~~I-Al~t~dg~i~I~ssd~~~~l~e~d~~~~~~p----------~q~~WC----G~da 272 (691)
.. .....+...++|+|+++ +.++.++++-+++..-.+.....+....-.| ....|. |..+
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE
T ss_pred cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee
Confidence 11 22345679999999974 4455667887777653333333333211011 133465 2222
Q ss_pred EEEE-------Ec-----C--eEEEEcCCCCceEeecCCCeEEee-----cCCceEEEecCcceeeeccch
Q 005559 273 VLLY-------WN-----D--MLVMVAPQAEPVQYFYDEPLVLIP-----ECDGVRILSNSSMEFLQRVPA 324 (691)
Q Consensus 273 vvl~-------~~-----~--~l~liGp~~~~v~f~~d~~~~l~~-----E~DGvRIit~~~~efL~~Vp~ 324 (691)
+... |+ - .+.+-|+. -.++-.++++-+.+. +-+-|-||..+.++...++..
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred cccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence 2111 11 1 22222222 345555665555443 345588998888877777643
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.91 E-value=0.37 Score=52.34 Aligned_cols=194 Identities=16% Similarity=0.269 Sum_probs=107.6
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC---Cc--eeEEEEecCCCCCEEEEEecCCCeEEEEE--eCCe
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA---GV--LISETVWKNPGGRLIGMSWSEDQTLICVV--QDGT 109 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s---G~--ll~si~~~~~~~~Iv~~~fs~de~Lv~v~--~DGt 109 (691)
.++++|+|+.+=+..... ...+.|..|..+ |+ ++.++.-.. .....+..+|+++.+.+. .+|+
T Consensus 41 ~l~~~~~~~~LY~~~e~~--------~~~g~v~~~~i~~~~g~L~~~~~~~~~g--~~p~~i~~~~~g~~l~vany~~g~ 110 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGS--------GDSGGVSSYRIDPDTGTLTLLNSVPSGG--SSPCHIAVDPDGRFLYVANYGGGS 110 (345)
T ss_dssp CEEE-TTSSEEEEEETTS--------STTTEEEEEEEETTTTEEEEEEEEEESS--SCEEEEEECTTSSEEEEEETTTTE
T ss_pred eEEEEeCCCEEEEEEccc--------cCCCCEEEEEECCCcceeEEeeeeccCC--CCcEEEEEecCCCEEEEEEccCCe
Confidence 455666666665554210 146778888754 43 455555433 578899999999966544 5999
Q ss_pred EEEEeCC--CCeecc--ccCC---Cc--cc-cccCeEEEEEeCCceEEEecC---CeEEEEecCCCc--eEEEcC--CCC
Q 005559 110 VYRYNIH--AELIEP--NASM---GK--EC-FEENVVECVFWGNGVVCVTEA---NRYFCMADFATM--KVCELA--RPE 172 (691)
Q Consensus 110 V~ly~~~--G~~~~~--sl~~---~~--~~-~~~~V~~~~~~~~G~vllt~~---~~~~~v~n~~~~--~~~~l~--~~~ 172 (691)
|.+|++. |.+... .+.+ +. +. .......+.+.++|..+...+ ..++.+ +++.. .+.... ..+
T Consensus 111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~-~~~~~~~~l~~~~~~~~~ 189 (345)
T PF10282_consen 111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY-DIDDDTGKLTPVDSIKVP 189 (345)
T ss_dssp EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE-EE-TTS-TEEEEEEEECS
T ss_pred EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE-EEeCCCceEEEeeccccc
Confidence 9999774 665331 1110 00 00 124467888899886544422 333333 22211 121111 112
Q ss_pred cCCCCceEEEecCCcCCCCCeEEEEEe-CCeEEEEecC---Ccc-------cc----cC-CCeeEEEECCCCCEEEEEee
Q 005559 173 VEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDED---GVQ-------KV----DD-TLSQKMAVSPNGNFVACFTH 236 (691)
Q Consensus 173 l~~~~~~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~---~~~-------~~----~~-~~i~~Ia~SpnG~~IAl~t~ 236 (691)
.+..|++.. |+++|....++.. +++|.+++.+ +.. .. .. ..-..|++||||++|-..+.
T Consensus 190 ~G~GPRh~~-----f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 190 PGSGPRHLA-----FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp TTSSEEEEE-----E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred cCCCCcEEE-----EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 224487776 4567776555544 7778887766 111 01 11 13568999999999888775
Q ss_pred -CCeEEEEecC
Q 005559 237 -DGRLVVNNTN 246 (691)
Q Consensus 237 -dg~i~I~ssd 246 (691)
.++|.++..|
T Consensus 265 ~~~sI~vf~~d 275 (345)
T PF10282_consen 265 GSNSISVFDLD 275 (345)
T ss_dssp TTTEEEEEEEC
T ss_pred cCCEEEEEEEe
Confidence 4678887764
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.88 E-value=0.028 Score=62.46 Aligned_cols=189 Identities=16% Similarity=0.167 Sum_probs=122.0
Q ss_pred EEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEec-CCCeEEEEEeCCeEEEEeC-CCCeeccccCC
Q 005559 49 VIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWS-EDQTLICVVQDGTVYRYNI-HAELIEPNASM 126 (691)
Q Consensus 49 ~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs-~de~Lv~v~~DGtV~ly~~-~G~~~~~sl~~ 126 (691)
+.-|-+|.|-+. .|.+|.+-...|.--.+ +-..+ |+ +|.++ |+.+|.++++..-|+.+|+ +|.++. +|..
T Consensus 102 LsDD~SK~v~L~---~DR~IefHak~G~hy~~-RIP~~-GR--Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~-P~~~ 173 (703)
T KOG2321|consen 102 LSDDYSKSVFLQ---NDRTIEFHAKYGRHYRT-RIPKF-GR--DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLN-PFET 173 (703)
T ss_pred eccchhhheEee---cCceeeehhhcCeeeee-ecCcC-Cc--cccccCCCccEEEeecCcceEEEEcccccccc-cccc
Confidence 455667777664 48899888777754332 22221 22 22332 4677888777777888888 799988 6654
Q ss_pred CccccccCeEEEEEeC-CceEEEecCCeEEEEecCC-CceEEEc------C-CCCcCCCCceEEEecCCcCCCCCeEEEE
Q 005559 127 GKECFEENVVECVFWG-NGVVCVTEANRYFCMADFA-TMKVCEL------A-RPEVEELPHCVAVIEPKYTMTGSVEVLI 197 (691)
Q Consensus 127 ~~~~~~~~V~~~~~~~-~G~vllt~~~~~~~v~n~~-~~~~~~l------~-~~~l~~~~~~w~vi~~~~S~d~~~~vl~ 197 (691)
. ..+++.|.+.+ +|++.+-+....+..|+-. ..++-.+ + .|.....|+.-++ .|+.+|=.....
T Consensus 174 ~----~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal---~F~d~gL~~aVG 246 (703)
T KOG2321|consen 174 D----SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL---KFRDDGLHVAVG 246 (703)
T ss_pred c----cccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEE---EecCCceeEEee
Confidence 3 35688888987 8888777766677777732 1222222 1 1111122554444 688777777777
Q ss_pred EeCCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEeeC-CeEEEEecCCCCcee
Q 005559 198 GTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHD-GRLVVNNTNFSSPVI 252 (691)
Q Consensus 198 s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~d-g~i~I~ssd~~~~l~ 252 (691)
..+|.|++.|..... ....-||..+.+-++++.=++++.| ..++||.-.-++.+.
T Consensus 247 ts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 247 TSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMA 308 (703)
T ss_pred ccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCcee
Confidence 778999999998665 2334578899998886666666666 466899776565543
No 247
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=96.87 E-value=0.012 Score=66.57 Aligned_cols=176 Identities=10% Similarity=0.073 Sum_probs=118.2
Q ss_pred cCCCeEEEEcCCC--ceeEEEEecCCCCCEEEEEecCCC---eEEEEEeCCeEEEEeCC----CCe-eccccCCCccccc
Q 005559 63 SALRKLRIFNSAG--VLISETVWKNPGGRLIGMSWSEDQ---TLICVVQDGTVYRYNIH----AEL-IEPNASMGKECFE 132 (691)
Q Consensus 63 ~~~~~I~Iys~sG--~ll~si~~~~~~~~Iv~~~fs~de---~Lv~v~~DGtV~ly~~~----G~~-~~~sl~~~~~~~~ 132 (691)
+.+..|+||+..- .++.++..|+ ..|.++.|--+| +.++.+.|..+..=..+ |.+ .+++-. ...
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HS--ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t----~~k 596 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHS--SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT----LSK 596 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccc--cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc----ccc
Confidence 4689999999643 4889999998 789999998766 46788888866533333 443 221111 124
Q ss_pred cCeEEEEEeCCceEEEecC-CeEEEEecCC-CceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecC-
Q 005559 133 ENVVECVFWGNGVVCVTEA-NRYFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED- 209 (691)
Q Consensus 133 ~~V~~~~~~~~G~vllt~~-~~~~~v~n~~-~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~- 209 (691)
..+.+..+-++-..++|.- .+-+.|-+++ +...+.|+...- +...-.-| .-.|+|-.++.-..|.|+-++|--
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~-~eG~lIKv---~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD-HEGDLIKV---ILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccccc-CCCceEEE---EECCCccEEEEeecCCceEEEEecc
Confidence 6688888877655555543 3333333444 445555653111 11222222 344788888888889998888755
Q ss_pred -Ccc---cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCC
Q 005559 210 -GVQ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS 248 (691)
Q Consensus 210 -~~~---~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~ 248 (691)
+|. ..|..-|+.|.|++|-++|.+.+.||-|+||.-...
T Consensus 673 gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 673 GECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred chhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 333 467888999999999999999999999999976543
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.87 E-value=0.045 Score=57.43 Aligned_cols=193 Identities=12% Similarity=0.187 Sum_probs=105.2
Q ss_pred CCEEEEEecCCCeE---EEEEeCCeEEEEeCCCCeecc---cc-----------------CCCcc---cc---------c
Q 005559 88 GRLIGMSWSEDQTL---ICVVQDGTVYRYNIHAELIEP---NA-----------------SMGKE---CF---------E 132 (691)
Q Consensus 88 ~~Iv~~~fs~de~L---v~v~~DGtV~ly~~~G~~~~~---sl-----------------~~~~~---~~---------~ 132 (691)
..|..+.|-+++.+ ++.+.|.|+++|...-+-.+. .+ +.+.. .. .
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 46888899887764 588999999999664221110 11 11000 00 0
Q ss_pred cCeEEEEEeCCceEEEecCCeEEEEecCCC----ceEEEcCCCCcCCCCceEEEe-cCCcCCCC-CeEEEEEeCCeEEEE
Q 005559 133 ENVVECVFWGNGVVCVTEANRYFCMADFAT----MKVCELARPEVEELPHCVAVI-EPKYTMTG-SVEVLIGTDAGILML 206 (691)
Q Consensus 133 ~~V~~~~~~~~G~vllt~~~~~~~v~n~~~----~~~~~l~~~~l~~~~~~w~vi-~~~~S~d~-~~~vl~s~d~ti~l~ 206 (691)
--|..+.+..++..+++++.--+-+|+++- .....++.... +. -..|| ...|+|.. .+.+.-+.-|+|.+.
T Consensus 165 yhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nm-Ee--LteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANM-EE--LTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred eEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCH-HH--HHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 012244455677777777765556666651 12222221000 00 00011 11244433 355666667888888
Q ss_pred ecCCcc---------c------------ccCCCeeEEEECCCCCEEEEEeeC-CeEEEEecCCCCc-eeeccCC------
Q 005559 207 DEDGVQ---------K------------VDDTLSQKMAVSPNGNFVACFTHD-GRLVVNNTNFSSP-VIDESCE------ 257 (691)
Q Consensus 207 d~~~~~---------~------------~~~~~i~~Ia~SpnG~~IAl~t~d-g~i~I~ssd~~~~-l~e~d~~------ 257 (691)
|....- . .....|..|.||++|++|.+ .| -++++|.-..... +..|..+
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryils--RDyltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILS--RDYLTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEE--eccceeEEEeccccCCcceEEeehHhHHHH
Confidence 876211 0 12345888999999999876 44 6888897755432 1111111
Q ss_pred --------CCCCCCeEEEecCceEEE--EEcCeEEEEc
Q 005559 258 --------SALPPEQIAWCGMDSVLL--YWNDMLVMVA 285 (691)
Q Consensus 258 --------~~~~p~q~~WCG~davvl--~~~~~l~liG 285 (691)
.-..-....|.|+|.+++ ++++.+.+++
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 111224778889998886 4556666665
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.34 Score=51.42 Aligned_cols=197 Identities=16% Similarity=0.208 Sum_probs=111.2
Q ss_pred CCCeEEEEcCC---Cc--eeEEEEecCCCCCEEEEEecCCCeEE--EEEeCCeEEEEeC--CCCeecc------ccCCCc
Q 005559 64 ALRKLRIFNSA---GV--LISETVWKNPGGRLIGMSWSEDQTLI--CVVQDGTVYRYNI--HAELIEP------NASMGK 128 (691)
Q Consensus 64 ~~~~I~Iys~s---G~--ll~si~~~~~~~~Iv~~~fs~de~Lv--~v~~DGtV~ly~~--~G~~~~~------sl~~~~ 128 (691)
.++.|--|.-+ |+ ++....-.. .....++.++++++| ....-|.|.+|-+ +|.+... +-+...
T Consensus 62 ~~ggvaay~iD~~~G~Lt~ln~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~ 139 (346)
T COG2706 62 EEGGVAAYRIDPDDGRLTFLNRQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPH 139 (346)
T ss_pred CcCcEEEEEEcCCCCeEEEeeccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCC
Confidence 35666666654 43 333333322 345889999999865 3456788999955 5765331 111111
Q ss_pred cccccC-eEEEEEeCCceEEEecC---CeEEEEecCCCceEEEcCCCCcC--CCCceEEEecCCcCCCCCeEEEEEe-CC
Q 005559 129 ECFEEN-VVECVFWGNGVVCVTEA---NRYFCMADFATMKVCELARPEVE--ELPHCVAVIEPKYTMTGSVEVLIGT-DA 201 (691)
Q Consensus 129 ~~~~~~-V~~~~~~~~G~vllt~~---~~~~~v~n~~~~~~~~l~~~~l~--~~~~~w~vi~~~~S~d~~~~vl~s~-d~ 201 (691)
+.++.. +..+.+.|+|..+++-+ .+++.. ++++.++.......+. ..|.+.. |.|+++..-++.. ++
T Consensus 140 ~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y-~~~dg~L~~~~~~~v~~G~GPRHi~-----FHpn~k~aY~v~EL~s 213 (346)
T COG2706 140 ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY-DLDDGKLTPADPAEVKPGAGPRHIV-----FHPNGKYAYLVNELNS 213 (346)
T ss_pred ccccCCccceeeeCCCCCEEEEeecCCceEEEE-EcccCccccccccccCCCCCcceEE-----EcCCCcEEEEEeccCC
Confidence 222222 77889999996555533 333332 3333333222111111 3488765 5678887666665 89
Q ss_pred eEEEEecCCcc--------------c-ccCCCeeEEEECCCCCEEEEEeeC-CeEEEEecCCCCceeecc---CCCCCCC
Q 005559 202 GILMLDEDGVQ--------------K-VDDTLSQKMAVSPNGNFVACFTHD-GRLVVNNTNFSSPVIDES---CESALPP 262 (691)
Q Consensus 202 ti~l~d~~~~~--------------~-~~~~~i~~Ia~SpnG~~IAl~t~d-g~i~I~ssd~~~~l~e~d---~~~~~~p 262 (691)
+|.+|.-++.. . .....-..|.+||||+||-..+.- ..|++...|-..-.+++- ...-..|
T Consensus 214 tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~P 293 (346)
T COG2706 214 TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFP 293 (346)
T ss_pred EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCC
Confidence 99999877531 0 122335579999999999887753 477777665432222221 1112247
Q ss_pred CeEEEe
Q 005559 263 EQIAWC 268 (691)
Q Consensus 263 ~q~~WC 268 (691)
+.+...
T Consensus 294 R~F~i~ 299 (346)
T COG2706 294 RDFNIN 299 (346)
T ss_pred ccceeC
Confidence 777665
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=96.81 E-value=0.0097 Score=70.01 Aligned_cols=133 Identities=13% Similarity=0.120 Sum_probs=91.4
Q ss_pred CCCeEEEEcCCCceeEE-EEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeCC-CCeec-cccCCCccccccCeEEEE
Q 005559 64 ALRKLRIFNSAGVLISE-TVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIH-AELIE-PNASMGKECFEENVVECV 139 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~s-i~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~-G~~~~-~sl~~~~~~~~~~V~~~~ 139 (691)
.-+.|-+|...+.-... +.+|. |.|.++.|+.||.. +++++|.++|+|.+. ++... +-|++. .+|+.+.
T Consensus 153 v~~~iivW~~~~dn~p~~l~GHe--G~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs-----aRvw~~~ 225 (967)
T KOG0974|consen 153 VFGEIIVWKPHEDNKPIRLKGHE--GSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS-----ARVWACC 225 (967)
T ss_pred ccccEEEEeccccCCcceecccC--CceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc-----ceeEEEE
Confidence 44556666665554444 77888 89999999999985 689999999999884 44443 456654 6799999
Q ss_pred EeCCceEEEecCCe-EEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCc
Q 005559 140 FWGNGVVCVTEANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV 211 (691)
Q Consensus 140 ~~~~G~vllt~~~~-~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~ 211 (691)
|.++ -+.|.+-+ .-.+|..++..+..+... ...+.|.++- .++....++...|+++.+|+..+.
T Consensus 226 ~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h---~g~~iw~~~~---~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 226 FLPN--RIITVGEDCTCRVWGVNGTQLEVYDEH---SGKGIWKIAV---PIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eccc--eeEEeccceEEEEEecccceehhhhhh---hhcceeEEEE---cCCceEEEeeccCcchhhhhhhcc
Confidence 9999 55555543 445666655554444321 1278898864 234455566677999999887743
No 251
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.79 E-value=0.064 Score=55.13 Aligned_cols=178 Identities=15% Similarity=0.211 Sum_probs=104.2
Q ss_pred CCeEEEEc--C-CCceeEEEEecCCCCCEEEEEecCCCe--EEEEEe---CC----eEEEEeCCCCeeccc-cC------
Q 005559 65 LRKLRIFN--S-AGVLISETVWKNPGGRLIGMSWSEDQT--LICVVQ---DG----TVYRYNIHAELIEPN-AS------ 125 (691)
Q Consensus 65 ~~~I~Iys--~-sG~ll~si~~~~~~~~Iv~~~fs~de~--Lv~v~~---DG----tV~ly~~~G~~~~~s-l~------ 125 (691)
++.|++-. . .|.+++..-.|+. |.|..++=+|-.+ |.++.. |. ..-+|++.-++.+.. .+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~a-gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHA-GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCC-cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 45555543 3 4455555555553 8899999999544 445554 22 367888864432200 00
Q ss_pred CCccccccCeEEEEEeCCceEEEecCCeEEEEecCCC-ce-EEEcCCCCcCCCCceEEEecCCcCC-CCCeEEEEEeCCe
Q 005559 126 MGKECFEENVVECVFWGNGVVCVTEANRYFCMADFAT-MK-VCELARPEVEELPHCVAVIEPKYTM-TGSVEVLIGTDAG 202 (691)
Q Consensus 126 ~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~-~~-~~~l~~~~l~~~~~~w~vi~~~~S~-d~~~~vl~s~d~t 202 (691)
...+ .-+.|..+.+-|||.-++.-..+-+.+|+.++ +. ...++.+...+..+ ..-.-.+|| .....+....|+|
T Consensus 118 Ldte-avg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~--~ftsg~WspHHdgnqv~tt~d~t 194 (370)
T KOG1007|consen 118 LDTE-AVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRH--SFTSGAWSPHHDGNQVATTSDST 194 (370)
T ss_pred CCHH-HhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccc--eecccccCCCCccceEEEeCCCc
Confidence 1111 12345555555888777776655556666653 32 33333221111111 111223445 3344566677899
Q ss_pred EEEEecCCcc------cccCCCeeEEEECCCCCE-EEEEeeCCeEEEEecC
Q 005559 203 ILMLDEDGVQ------KVDDTLSQKMAVSPNGNF-VACFTHDGRLVVNNTN 246 (691)
Q Consensus 203 i~l~d~~~~~------~~~~~~i~~Ia~SpnG~~-IAl~t~dg~i~I~ssd 246 (691)
+..||..... ..|...+..|-|.||-++ ||+.++||.++||+.-
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence 9999988544 356777999999999875 7888889999999763
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.74 E-value=0.48 Score=51.48 Aligned_cols=200 Identities=12% Similarity=0.117 Sum_probs=115.0
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeC
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI 115 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~ 115 (691)
.+++||+|..+-+..- +.++.+.+.+. +|+.+.+|.-.. +..+ +-++ ++...+...||....+.+
T Consensus 109 ~~~ls~dgk~l~V~n~----------~p~~~V~VvD~~~~kvv~ei~vp~--~~~v-y~t~-e~~~~~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQF----------SPSPAVGVVDLEGKAFVRMMDVPD--CYHI-FPTA-NDTFFMHCRDGSLAKVGY 174 (352)
T ss_pred eEEECCCCCEEEEecC----------CCCCEEEEEECCCCcEEEEEeCCC--CcEE-EEec-CCccEEEeecCceEEEEe
Confidence 7788898888877641 24788999996 788999998633 3322 2343 333445556777666533
Q ss_pred --CCCeeccccCC-CccccccCeEE-EEEeC-Cc-eEEEecCCeEEEEecCC----CceEEEc-CCCCc--CCCCceEEE
Q 005559 116 --HAELIEPNASM-GKECFEENVVE-CVFWG-NG-VVCVTEANRYFCMADFA----TMKVCEL-ARPEV--EELPHCVAV 182 (691)
Q Consensus 116 --~G~~~~~sl~~-~~~~~~~~V~~-~~~~~-~G-~vllt~~~~~~~v~n~~----~~~~~~l-~~~~l--~~~~~~w~v 182 (691)
.|+....+..- +.+ +..|.. -.+++ +| .+.+|..+.++.+.--. ....+.+ +.-.. .=.|..|..
T Consensus 175 d~~g~~~~~~~~vf~~~--~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHPE--DEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred cCCCceEEeeeeeecCC--ccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 45532212110 000 011111 13344 44 55677777777775211 1122222 11000 012666666
Q ss_pred ecCCcCCCCCeEEEEEe----------CCeEEEEecCCcc---c-ccCCCeeEEEECCCCC-EEEEEee-CCeEEEEecC
Q 005559 183 IEPKYTMTGSVEVLIGT----------DAGILMLDEDGVQ---K-VDDTLSQKMAVSPNGN-FVACFTH-DGRLVVNNTN 246 (691)
Q Consensus 183 i~~~~S~d~~~~vl~s~----------d~ti~l~d~~~~~---~-~~~~~i~~Ia~SpnG~-~IAl~t~-dg~i~I~ssd 246 (691)
+ .++++|+....+.. +++|.++|..... . ....+..+|++||||+ ++...+. ++.+.|++..
T Consensus 253 i--a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 253 V--AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred E--EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 4 47778876666432 3579999987655 2 2355788999999999 6666663 6889998876
Q ss_pred CCCceeec
Q 005559 247 FSSPVIDE 254 (691)
Q Consensus 247 ~~~~l~e~ 254 (691)
-.+.+...
T Consensus 331 t~k~i~~i 338 (352)
T TIGR02658 331 TGKELSSV 338 (352)
T ss_pred CCeEEeee
Confidence 55555554
No 253
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.73 E-value=0.0027 Score=69.68 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=66.4
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYR 112 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~l 112 (691)
...-.++||+|..+|+++ .|+.++||+.+-+.|--+--..+ |.+.++.|||||++ ++.++|--|.|
T Consensus 292 ~in~f~FS~DG~~LA~VS------------qDGfLRvF~fdt~eLlg~mkSYF-GGLLCvcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVS------------QDGFLRIFDFDTQELLGVMKSYF-GGLLCVCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred cccceeEcCCCceEEEEe------------cCceEEEeeccHHHHHHHHHhhc-cceEEEEEcCCccEEEecCCcceEEE
Confidence 556789999999999996 79999999997765544332333 78999999999996 57999999999
Q ss_pred EeCC-CCeeccccCCCccccccCeEEEEEe
Q 005559 113 YNIH-AELIEPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 113 y~~~-G~~~~~sl~~~~~~~~~~V~~~~~~ 141 (691)
|++. ++... -=..| ..-|..++|=
T Consensus 359 wSf~erRVVA-RGqGH----kSWVs~VaFD 383 (636)
T KOG2394|consen 359 WSFEERRVVA-RGQGH----KSWVSVVAFD 383 (636)
T ss_pred EEeccceEEE-ecccc----ccceeeEeec
Confidence 9985 33333 22223 3456666653
No 254
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=96.72 E-value=0.05 Score=57.08 Aligned_cols=159 Identities=13% Similarity=0.168 Sum_probs=90.7
Q ss_pred EEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEe----CCceEEEecCCeEEEEecCCC---ceEEEcCCCC
Q 005559 101 LICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFW----GNGVVCVTEANRYFCMADFAT---MKVCELARPE 172 (691)
Q Consensus 101 Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~----~~G~vllt~~~~~~~v~n~~~---~~~~~l~~~~ 172 (691)
+++..++|+|++||+ .|+.++ .+..+ ...+..++|. ++|+...+.+| .+.+|++.. .-.....+
T Consensus 43 vav~lSngsv~lyd~~tg~~l~-~fk~~----~~~~N~vrf~~~ds~h~v~s~ssDG-~Vr~wD~Rs~~e~a~~~~~~-- 114 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLE-EFKGP----PATTNGVRFISCDSPHGVISCSSDG-TVRLWDIRSQAESARISWTQ-- 114 (376)
T ss_pred EEEEecCCeEEEEeccchhhhh-eecCC----CCcccceEEecCCCCCeeEEeccCC-eEEEEEeecchhhhheeccC--
Confidence 568899999999998 476665 33333 2345566664 35555555555 345555431 11111111
Q ss_pred cCCCCceEEEecCCcCCCCCeEEEEEe----CCeEEEEecCCcc-------cccCCCeeEEEECCCC-CEEEEEeeCCeE
Q 005559 173 VEELPHCVAVIEPKYTMTGSVEVLIGT----DAGILMLDEDGVQ-------KVDDTLSQKMAVSPNG-NFVACFTHDGRL 240 (691)
Q Consensus 173 l~~~~~~w~vi~~~~S~d~~~~vl~s~----d~ti~l~d~~~~~-------~~~~~~i~~Ia~SpnG-~~IAl~t~dg~i 240 (691)
..+.....+. -...++.++.... +-.|++||....+ ..|..-|+++.|.|+. .+|++++-||-+
T Consensus 115 --~~~~~f~~ld--~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLv 190 (376)
T KOG1188|consen 115 --QSGTPFICLD--LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLV 190 (376)
T ss_pred --CCCCcceEee--ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceE
Confidence 1111111111 1123444443322 4478999988554 4588899999999987 689999999999
Q ss_pred EEEecCCC--CceeeccCCCCCCCCeEEEecCc
Q 005559 241 VVNNTNFS--SPVIDESCESALPPEQIAWCGMD 271 (691)
Q Consensus 241 ~I~ssd~~--~~l~e~d~~~~~~p~q~~WCG~d 271 (691)
-|++..-+ +.-+..-.+..+...-+.|.|+-
T Consensus 191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred EeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 88876422 11111112223356677887665
No 255
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=96.71 E-value=0.21 Score=52.13 Aligned_cols=151 Identities=16% Similarity=0.075 Sum_probs=95.8
Q ss_pred EecCCCCCEEEEEecCCCeEEEEEeCC-eEEEEeCCCCe---eccccCCCccccccCeEEEEEeCCceEEEecCC-eEEE
Q 005559 82 VWKNPGGRLIGMSWSEDQTLICVVQDG-TVYRYNIHAEL---IEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFC 156 (691)
Q Consensus 82 ~~~~~~~~Iv~~~fs~de~Lv~v~~DG-tV~ly~~~G~~---~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~ 156 (691)
.+|...++|.+++|++|..-+.++.+. -|.||...|.- .-+++.+| +..|..+-..+.+--|+|-+. +=.+
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H----d~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH----DKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh----CcceeEEeecCCCCceeEccCCCCcc
Confidence 444444789999999998866555544 79999887643 22467766 333444443455544444332 2223
Q ss_pred EecC-CC----ceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc---------cccCCCeeEE
Q 005559 157 MADF-AT----MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKM 222 (691)
Q Consensus 157 v~n~-~~----~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~---------~~~~~~i~~I 222 (691)
||.. ++ |.+..+. .....-+| ++||.+...+..+....|-+|-.++.. ......|..+
T Consensus 81 Vw~~~~~~~WkptlvLlR-----iNrAAt~V---~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sl 152 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLR-----INRAATCV---KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL 152 (361)
T ss_pred ccccCCCCeeccceeEEE-----eccceeeE---eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeee
Confidence 3333 22 2222111 11122233 688999999999888888887766443 2344568999
Q ss_pred EECCCCCEEEEEeeCCeEEEEe
Q 005559 223 AVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 223 a~SpnG~~IAl~t~dg~i~I~s 244 (691)
++.||+-++|.++.|++.+|.+
T Consensus 153 dWhpnnVLlaaGs~D~k~rVfS 174 (361)
T KOG1523|consen 153 DWHPNNVLLAAGSTDGKCRVFS 174 (361)
T ss_pred eccCCcceecccccCcceeEEE
Confidence 9999999999999999988875
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=1.8 Score=49.75 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=55.1
Q ss_pred EEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCC
Q 005559 38 VACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH 116 (691)
Q Consensus 38 vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~ 116 (691)
.--+|+|..+|+.+..+.-+. ....+.|++|++-|+.+.+++-.. ..|.++.|--.|--+.+.-|+++.+=++.
T Consensus 264 akWnh~G~vLAvcG~~~da~~---~~d~n~v~Fysp~G~i~gtlkvpg--~~It~lsWEg~gLriA~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 264 AKWNHNGAVLAVCGNDSDADE---PTDSNKVHFYSPYGHIVGTLKVPG--SCITGLSWEGTGLRIAIAVDSFIYFANIR 337 (1189)
T ss_pred ceecCCCcEEEEccCcccccC---ccccceEEEeccchhheEEEecCC--ceeeeeEEcCCceEEEEEecceEEEEeec
Confidence 345789999999986554332 123468999999999999999876 67999999755555777778877665554
No 257
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=96.68 E-value=0.06 Score=54.72 Aligned_cols=254 Identities=13% Similarity=0.109 Sum_probs=133.6
Q ss_pred EEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccC-CCccccccCeEEEEEeCCceEEEecCCeEEEEe
Q 005559 80 ETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNAS-MGKECFEENVVECVFWGNGVVCVTEANRYFCMA 158 (691)
Q Consensus 80 si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~-~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~ 158 (691)
.++-|. +.+.++.|-.+|.|..+++-|.|++|.++++.-...+. .+ ...|...+.-+++..+.-+.+-...+|
T Consensus 9 vLRp~~--~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g----~~~it~lq~~p~d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 9 VLRPHS--SSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFG----RLFITNLQSIPNDSLDTQGRDPLLILW 82 (323)
T ss_pred Eecccc--chheehhhccchhhhcccccceEEEEEeecCccchhhhhhc----cceeeceeecCCcchhhcCCCceEEEE
Confidence 344555 78999999999999999999999999999886443433 22 123444444444433333333333444
Q ss_pred cCCCceEEEcCCCCcC------------CCCceEEEecCCcCCCCCeEE-EEEeCCeEEEEecCCcccccCCCeeEEEEC
Q 005559 159 DFATMKVCELARPEVE------------ELPHCVAVIEPKYTMTGSVEV-LIGTDAGILMLDEDGVQKVDDTLSQKMAVS 225 (691)
Q Consensus 159 n~~~~~~~~l~~~~l~------------~~~~~w~vi~~~~S~d~~~~v-l~s~d~ti~l~d~~~~~~~~~~~i~~Ia~S 225 (691)
.+.......+..+.++ ..+..|....|. .|.-++ ....+.+.-+.-.++......|.+ |+++
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~---rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv--mc~~ 157 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPS---RGSDETHKQDGGDTTQVQIADDSERSKLGSV--MCQD 157 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCC---cccchhhhhccCccceeEccCchhccccCce--eeee
Confidence 4443222222111111 112223222111 111110 000000100100111111222333 3333
Q ss_pred ---CCC-CEEEEEe-eCCeEEEEecCCCCceeecc----------CCCCCCCCeEEE----------ecCceEE------
Q 005559 226 ---PNG-NFVACFT-HDGRLVVNNTNFSSPVIDES----------CESALPPEQIAW----------CGMDSVL------ 274 (691)
Q Consensus 226 ---pnG-~~IAl~t-~dg~i~I~ssd~~~~l~e~d----------~~~~~~p~q~~W----------CG~davv------ 274 (691)
-+| +++++++ ++|.+-+|.-+.++++..|. .+ +.+..++.. |-.|.++
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash-~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASH-KQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhc-cCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 223 3444443 57877777655443333322 11 112222222 1123333
Q ss_pred ----EEEcCeEEEEcCCCCceEeecCCCeEEeecCCc-eEEEecCcceeeeccchhhhhhcccCCCChhhHHHHHH
Q 005559 275 ----LYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDAL 345 (691)
Q Consensus 275 ----l~~~~~l~liGp~~~~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~~~~If~igS~~Pga~L~~A~ 345 (691)
+....++.+.-|+-.-++.-+|+.+.....-|| +||++=.++.-|--+.-|..-|-.+.+++...++..|+
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas 312 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS 312 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc
Confidence 222347888888888999999999999999999 99999988888877777777777777666656665554
No 258
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=96.67 E-value=0.054 Score=55.71 Aligned_cols=206 Identities=14% Similarity=0.170 Sum_probs=120.9
Q ss_pred CCCeEEEEcCC---Cce--eEEEEec---CCCCCEEEEEecCCC-eE-EEEEeCCeEEEEeCC-CC--eeccccCCCccc
Q 005559 64 ALRKLRIFNSA---GVL--ISETVWK---NPGGRLIGMSWSEDQ-TL-ICVVQDGTVYRYNIH-AE--LIEPNASMGKEC 130 (691)
Q Consensus 64 ~~~~I~Iys~s---G~l--l~si~~~---~~~~~Iv~~~fs~de-~L-v~v~~DGtV~ly~~~-G~--~~~~sl~~~~~~ 130 (691)
....+++|..+ ++. ...+.-+ +..+++.+|.|+.-+ .+ .+-+-|-|..+|++. |. ..++.+-.|
T Consensus 119 s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH--- 195 (364)
T KOG0290|consen 119 SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH--- 195 (364)
T ss_pred ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec---
Confidence 45779999865 222 1112211 223689999998743 45 477789999999985 31 133355555
Q ss_pred cccCeEEEEEeCCceE-EEe--cCC--eEEEEecCCCc-eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeC-CeE
Q 005559 131 FEENVVECVFWGNGVV-CVT--EAN--RYFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD-AGI 203 (691)
Q Consensus 131 ~~~~V~~~~~~~~G~v-llt--~~~--~~~~v~n~~~~-~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d-~ti 203 (691)
+.+|.+++|...|.- +++ ++| +++-+.+++-. -.+.=+.+.-.-..-+|+= .|-...++++.| +.|
T Consensus 196 -DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk------qDpnymATf~~dS~~V 268 (364)
T KOG0290|consen 196 -DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK------QDPNYMATFAMDSNKV 268 (364)
T ss_pred -CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc------CCchHHhhhhcCCceE
Confidence 567999999875533 333 333 35555454322 1111111000000234442 233344555553 357
Q ss_pred EEEecCCcc------cccCCCeeEEEECCCC-CEEEEEeeCCeEEEEecC--CC----CceeeccCCCCCCCCeEEEe--
Q 005559 204 LMLDEDGVQ------KVDDTLSQKMAVSPNG-NFVACFTHDGRLVVNNTN--FS----SPVIDESCESALPPEQIAWC-- 268 (691)
Q Consensus 204 ~l~d~~~~~------~~~~~~i~~Ia~SpnG-~~IAl~t~dg~i~I~ssd--~~----~~l~e~d~~~~~~p~q~~WC-- 268 (691)
.++|..--- +.|.++|..|++.|.. .+||++++|-...||..+ +. +.++-|.. .....|+.|.
T Consensus 269 ~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a--~~EVNqi~Ws~~ 346 (364)
T KOG0290|consen 269 VILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA--GGEVNQIQWSSS 346 (364)
T ss_pred EEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc--cceeeeeeeccc
Confidence 777766221 5799999999999976 589999999888888642 22 22444542 3367899997
Q ss_pred cCceEEEEEcCeE
Q 005559 269 GMDSVLLYWNDML 281 (691)
Q Consensus 269 G~davvl~~~~~l 281 (691)
-.|-+++-+++.+
T Consensus 347 ~~Dwiai~~~kkl 359 (364)
T KOG0290|consen 347 QPDWIAICFGKKL 359 (364)
T ss_pred CCCEEEEEecCee
Confidence 5677777776644
No 259
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=96.64 E-value=0.0023 Score=64.61 Aligned_cols=68 Identities=13% Similarity=0.194 Sum_probs=60.8
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVY 111 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ 111 (691)
....|.+=|+|...|++. .|+.|+||+. .++++.-+++|+ +.|.+++|+|+..| ..++.|++|-
T Consensus 253 Gv~gvrIRpD~KIlATAG------------WD~RiRVyswrtl~pLAVLkyHs--agvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAG------------WDHRIRVYSWRTLNPLAVLKYHS--AGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred CccceEEccCCcEEeecc------------cCCcEEEEEeccCCchhhhhhhh--cceeEEEeCCCCchhhhccCCceEE
Confidence 445788999999999886 8999999996 899999999999 89999999999665 6899999999
Q ss_pred EEeC
Q 005559 112 RYNI 115 (691)
Q Consensus 112 ly~~ 115 (691)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9975
No 260
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.63 E-value=0.052 Score=55.82 Aligned_cols=149 Identities=11% Similarity=0.187 Sum_probs=91.5
Q ss_pred CCEEEEEecCCCeEEEEEeCCeEEEEeCC-CCe-eccccCCCcccc-ccCeEEEEEeC--CceEEEecCCeEEEEecCCC
Q 005559 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIH-AEL-IEPNASMGKECF-EENVVECVFWG--NGVVCVTEANRYFCMADFAT 162 (691)
Q Consensus 88 ~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~-G~~-~~~sl~~~~~~~-~~~V~~~~~~~--~G~vllt~~~~~~~v~n~~~ 162 (691)
|+|.++.|-||+.-++...|..|.+|++. +.. .. .+....+.. +......+.+| +|-.++|.++.....|+...
T Consensus 124 g~i~cvew~Pns~klasm~dn~i~l~~l~ess~~va-ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT 202 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVA-EVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRT 202 (370)
T ss_pred CceeeEEEcCCCCeeEEeccCceEEEEcccCcchhe-eecccccccccceecccccCCCCccceEEEeCCCcEEEEEccc
Confidence 78999999999886555558889999995 222 22 111111100 12233444444 88888877766555555432
Q ss_pred c-eEEEcCCCCcCCCCceEEEecCCcCCCCC-eEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCCE-EEE
Q 005559 163 M-KVCELARPEVEELPHCVAVIEPKYTMTGS-VEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNF-VAC 233 (691)
Q Consensus 163 ~-~~~~l~~~~l~~~~~~w~vi~~~~S~d~~-~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~-IAl 233 (691)
. ..+.+. ..+.=-|...+|.|+.+ .+|..+.|+.|.+||..... ..|...+..|.|.|-... |.+
T Consensus 203 ~~~~~sI~------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 203 MKKNNSIE------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred hhhhcchh------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 1 222222 23333455558888887 44666678999999988654 356777999999998865 444
Q ss_pred EeeCCeEEEE
Q 005559 234 FTHDGRLVVN 243 (691)
Q Consensus 234 ~t~dg~i~I~ 243 (691)
++.|..+-++
T Consensus 277 ~~SDs~V~Ls 286 (370)
T KOG1007|consen 277 GGSDSAVNLS 286 (370)
T ss_pred cCCCceeEEE
Confidence 5556665544
No 261
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=96.61 E-value=0.11 Score=59.47 Aligned_cols=180 Identities=14% Similarity=0.109 Sum_probs=109.6
Q ss_pred cCCCeEEEEcCCCc-e--eEEEEe--cCCCCCEEEEEecCCCe---EEEEEeCCeEEEEeCCCC-------eeccccCCC
Q 005559 63 SALRKLRIFNSAGV-L--ISETVW--KNPGGRLIGMSWSEDQT---LICVVQDGTVYRYNIHAE-------LIEPNASMG 127 (691)
Q Consensus 63 ~~~~~I~Iys~sG~-l--l~si~~--~~~~~~Iv~~~fs~de~---Lv~v~~DGtV~ly~~~G~-------~~~~sl~~~ 127 (691)
...+.|-+|+..+. . .+.+.- +...+.++.+-|..++. +++++.||.|..|+++.- +......-+
T Consensus 262 ~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~ 341 (555)
T KOG1587|consen 262 CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKG 341 (555)
T ss_pred ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccc
Confidence 57899999997543 2 233222 22226899999998643 789999999999976531 111011000
Q ss_pred c-cccccCeEEEEEe---CCceEEEecCCeEEEEecCC-CceE-EEcCCC-CcC-CCCceEEEecCCcCCCCCeEEEEEe
Q 005559 128 K-ECFEENVVECVFW---GNGVVCVTEANRYFCMADFA-TMKV-CELARP-EVE-ELPHCVAVIEPKYTMTGSVEVLIGT 199 (691)
Q Consensus 128 ~-~~~~~~V~~~~~~---~~G~vllt~~~~~~~v~n~~-~~~~-~~l~~~-~l~-~~~~~w~vi~~~~S~d~~~~vl~s~ 199 (691)
. .....++..++|- ++-+++-|..|.++.-..-. .+.. ..++.. ... +...+.+| +++|=+...++.+.
T Consensus 342 ~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v---~~nPF~~k~fls~g 418 (555)
T KOG1587|consen 342 QQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAV---SRNPFYPKNFLSVG 418 (555)
T ss_pred cccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEee---ecCCCccceeeeec
Confidence 0 0123446666764 47788888889888754332 2222 111111 011 22233344 45566667777777
Q ss_pred CCeEEEEecC-Ccc-----cccCCCeeEEEECCCCC-EEEEEeeCCeEEEEec
Q 005559 200 DAGILMLDED-GVQ-----KVDDTLSQKMAVSPNGN-FVACFTHDGRLVVNNT 245 (691)
Q Consensus 200 d~ti~l~d~~-~~~-----~~~~~~i~~Ia~SpnG~-~IAl~t~dg~i~I~ss 245 (691)
|-+|.+|+.+ ... ..+...++.+++||--- ..|+...+|+|.||+-
T Consensus 419 DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 419 DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 9999999988 332 34556699999999863 4666667899999964
No 262
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=96.57 E-value=0.0046 Score=43.97 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=29.5
Q ss_pred cccCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 213 KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 213 ~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
..+.++|..|+++|+++++|+++.|++|++|+
T Consensus 8 ~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45789999999999999999999999999985
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.54 E-value=1.4 Score=48.28 Aligned_cols=246 Identities=14% Similarity=0.151 Sum_probs=122.1
Q ss_pred CCCeEEEEc-CCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEe
Q 005559 64 ALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 64 ~~~~I~Iys-~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~ 141 (691)
.++.|.-|+ .+|+++++..... ...-...- .++.+++.+.||.+..+|. .|+..- ..... ..+...-+-
T Consensus 73 ~~g~v~a~d~~tG~~~W~~~~~~--~~~~~p~v-~~~~v~v~~~~g~l~ald~~tG~~~W-~~~~~-----~~~~~~p~v 143 (377)
T TIGR03300 73 ADGTVVALDAETGKRLWRVDLDE--RLSGGVGA-DGGLVFVGTEKGEVIALDAEDGKELW-RAKLS-----SEVLSPPLV 143 (377)
T ss_pred CCCeEEEEEccCCcEeeeecCCC--CcccceEE-cCCEEEEEcCCCEEEEEECCCCcEee-eeccC-----ceeecCCEE
Confidence 467899999 5899999887654 11111111 2566778889999999998 688753 22211 112222222
Q ss_pred CCceEEE-ecCCeEEEEecCCCceEEEcCCCCcCCCCceE--EEecCCcCCCCCeEEEEEeCCeEEEEecC-Ccc--c--
Q 005559 142 GNGVVCV-TEANRYFCMADFATMKVCELARPEVEELPHCV--AVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ--K-- 213 (691)
Q Consensus 142 ~~G~vll-t~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w--~vi~~~~S~d~~~~vl~s~d~ti~l~d~~-~~~--~-- 213 (691)
.+|.+++ +.++.++.++--.+...|+..... +... ...+|.. .+...++...++.++.+|.. |.. .
T Consensus 144 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~----~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 144 ANGLVVVRTNDGRLTALDAATGERLWTYSRVT----PALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred ECCEEEEECCCCeEEEEEcCCCceeeEEccCC----CceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 3455555 455677777654566677764311 1000 0001111 12344444456788888863 432 1
Q ss_pred c--cCC-----CeeEEEECC--CCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCC----CeEEEecCceEEEEEcC-
Q 005559 214 V--DDT-----LSQKMAVSP--NGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPP----EQIAWCGMDSVLLYWND- 279 (691)
Q Consensus 214 ~--~~~-----~i~~Ia~Sp--nG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p----~q~~WCG~davvl~~~~- 279 (691)
. ..+ +...+.-+| .+..+-+.+.+|.+..++..-++.+...+......| ..+.-+..|..+..++.
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred cccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECC
Confidence 0 000 001111112 234555566677777776654555544442222222 12323333444433331
Q ss_pred --eEEEEc--CCCC-ceEeecCCCeEEeecCCc-eEEEecCcceeeeccch
Q 005559 280 --MLVMVA--PQAE-PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPA 324 (691)
Q Consensus 280 --~l~liG--p~~~-~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~ 324 (691)
++..-- ..+. ...-...+..+++.+.|| +.++..++.+++.+.+-
T Consensus 298 tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 298 SGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred CCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 111100 0000 000011234556677788 99999988999988764
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.04 Score=61.12 Aligned_cols=131 Identities=14% Similarity=0.177 Sum_probs=88.3
Q ss_pred CCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEE--EEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEe
Q 005559 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LIC--VVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~--v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~ 141 (691)
..++++++-.|.-. .++.... |+|+++.|++++. .++ +.--.+|-+||+.|+..- .++.+ .=.++.|+
T Consensus 250 Eq~Lyll~t~g~s~-~V~L~k~-GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~-df~eg------pRN~~~fn 320 (566)
T KOG2315|consen 250 EQTLYLLATQGESV-SVPLLKE-GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF-DFPEG------PRNTAFFN 320 (566)
T ss_pred cceEEEEEecCceE-EEecCCC-CCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE-eCCCC------CccceEEC
Confidence 67899999887654 4455543 8999999999986 432 566788999999999866 77644 23566667
Q ss_pred CCceEEEecC-Ce---EEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEe------CCeEEEEecCCc
Q 005559 142 GNGVVCVTEA-NR---YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT------DAGILMLDEDGV 211 (691)
Q Consensus 142 ~~G~vllt~~-~~---~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~------d~ti~l~d~~~~ 211 (691)
+.|-+++... |+ -..|||+.+. ..+..+. -.|+.+. .|+|||+..+++.. |+.+.+|+-+|.
T Consensus 321 p~g~ii~lAGFGNL~G~mEvwDv~n~--K~i~~~~-----a~~tt~~-eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 321 PHGNIILLAGFGNLPGDMEVWDVPNR--KLIAKFK-----AANTTVF-EWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CCCCEEEEeecCCCCCceEEEeccch--hhccccc-----cCCceEE-EEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 8886665543 32 3455555432 2233211 1122221 58899999988875 788999999987
Q ss_pred c
Q 005559 212 Q 212 (691)
Q Consensus 212 ~ 212 (691)
.
T Consensus 393 ~ 393 (566)
T KOG2315|consen 393 L 393 (566)
T ss_pred e
Confidence 6
No 265
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.44 E-value=0.35 Score=53.40 Aligned_cols=254 Identities=9% Similarity=0.076 Sum_probs=132.2
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCe
Q 005559 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGT 109 (691)
Q Consensus 32 ~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGt 109 (691)
+.....+..||.|..+|... ..-|.+|.. ++-.+.++.. ..|..++|||+|+. ++=...+.
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~-------------~~~V~~~~g~~~~~l~~~~~----~~V~~~~fSP~~kYL~tw~~~pi 94 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEH-------------AAGVECWGGPSKAKLVRFRH----PDVKYLDFSPNEKYLVTWSREPI 94 (561)
T ss_pred CcchhheeecCcchheehhh-------------ccceEEccccchhheeeeec----CCceecccCcccceeeeeccCCc
Confidence 45566889999999999884 456888885 4445545442 47999999999995 44444333
Q ss_pred ---------------EEEEeCCCCeeccccCCCccccccCeE-EEEEe--C-CceEEEecCCeEEEEe-cCCCceEEEcC
Q 005559 110 ---------------VYRYNIHAELIEPNASMGKECFEENVV-ECVFW--G-NGVVCVTEANRYFCMA-DFATMKVCELA 169 (691)
Q Consensus 110 ---------------V~ly~~~G~~~~~sl~~~~~~~~~~V~-~~~~~--~-~G~vllt~~~~~~~v~-n~~~~~~~~l~ 169 (691)
+.+||.-+..+-+++..... .--.+ -.+++ + .+.-+++.+-.++.+. |++..-...+.
T Consensus 95 ~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q--~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr 172 (561)
T COG5354 95 IEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQ--PYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLR 172 (561)
T ss_pred cChhhccCCccccCceeEEeccCceeEeeccccCC--cccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhcc
Confidence 78888866555446654321 10022 23333 2 2222333333444432 22211111111
Q ss_pred CCCcCCCCceEEEecCCcCCC--CCeEEEEEe-----CCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeC
Q 005559 170 RPEVEELPHCVAVIEPKYTMT--GSVEVLIGT-----DAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHD 237 (691)
Q Consensus 170 ~~~l~~~~~~w~vi~~~~S~d--~~~~vl~s~-----d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~d 237 (691)
. ....... +||. +..+++... ..++.+|..-... .+-.-.=.++.+.++|++|++....
T Consensus 173 ~----~gi~dFs-----isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 173 P----VGILDFS-----ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred c----cceeeEE-----ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 0 1112222 2222 122233322 2244444433111 1111112367888999999998765
Q ss_pred CeEEEEecCCCCc--e-e---ecc----CCCCCCCCeEEE--ecCceEEEE---------Ec--CeEEEEcCCCC--ceE
Q 005559 238 GRLVVNNTNFSSP--V-I---DES----CESALPPEQIAW--CGMDSVLLY---------WN--DMLVMVAPQAE--PVQ 292 (691)
Q Consensus 238 g~i~I~ssd~~~~--l-~---e~d----~~~~~~p~q~~W--CG~davvl~---------~~--~~l~liGp~~~--~v~ 292 (691)
.+ +.-.+-|++. + + +.+ .+..++..++.| -++.-.+++ ++ .-+..++|.+. .+.
T Consensus 244 ~~-ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~ 322 (561)
T COG5354 244 HT-KSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIF 322 (561)
T ss_pred ee-ecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCccccccc
Confidence 44 3333334221 1 1 222 122456789999 355444444 22 24777888774 777
Q ss_pred eecCCCeEEeecCCc----eEEEecC
Q 005559 293 YFYDEPLVLIPECDG----VRILSNS 314 (691)
Q Consensus 293 f~~d~~~~l~~E~DG----vRIit~~ 314 (691)
|++.+..+|+.+.|- +-|+..-
T Consensus 323 fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 323 FSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred ccCcccEEEEecCCccccceEEeccC
Confidence 777777888877763 5555544
No 266
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=96.43 E-value=0.35 Score=51.57 Aligned_cols=211 Identities=13% Similarity=0.068 Sum_probs=116.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC-------ceeEEEEecCCCCCEEEEEecCCCe-EEEEEeC
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-------VLISETVWKNPGGRLIGMSWSEDQT-LICVVQD 107 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-------~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~D 107 (691)
..+-+|.+|+.+|...| +..+++|+-.- ++|.-.. |....+|.++.|..... +.++..+
T Consensus 60 NAlqFS~N~~~L~SGGD------------D~~~~~W~~de~~~~k~~KPI~~~~-~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 60 NALQFSHNDRFLASGGD------------DMHGRVWNVDELMVRKTPKPIGVME-HPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred ceeeeccCCeEEeecCC------------cceeeeechHHHHhhcCCCCceecc-CccccceEEEEEccCCeeEecCCCc
Confidence 36778999999998764 67789998654 3333222 33226899999986554 6789999
Q ss_pred CeEEEEeCCCCeeccccCCCccccccCeEEEEEeC--CceEEEecCCeEEEEecCCCceE---EEcCCCCcCCCCceE-E
Q 005559 108 GTVYRYNIHAELIEPNASMGKECFEENVVECVFWG--NGVVCVTEANRYFCMADFATMKV---CELARPEVEELPHCV-A 181 (691)
Q Consensus 108 GtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~--~G~vllt~~~~~~~v~n~~~~~~---~~l~~~~l~~~~~~w-~ 181 (691)
|+|..-|+..+..-.-+.+... .+.|.....+| |-+++.|..+.+..+.+-+.+.+ ..+++. |... +
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~--~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~-----~~~F~t 199 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNN--RGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS-----GKNFYT 199 (609)
T ss_pred ceeEeeecccceeeeeecccCc--ccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCC-----Ccccee
Confidence 9999999865432222322211 34687777776 33444444455444444444322 222221 2211 2
Q ss_pred EecCCcCCCCC-eEEEEEeCCeEEEEecCCcc----------cc--cCCCeeEEEECCCCCE-EEEEee---------CC
Q 005559 182 VIEPKYTMTGS-VEVLIGTDAGILMLDEDGVQ----------KV--DDTLSQKMAVSPNGNF-VACFTH---------DG 238 (691)
Q Consensus 182 vi~~~~S~d~~-~~vl~s~d~ti~l~d~~~~~----------~~--~~~~i~~Ia~SpnG~~-IAl~t~---------dg 238 (691)
+ -|.|-.- ++++.+.-+.+-+||..-.+ .+ ....|..+.|||+|.. +|+--. +.
T Consensus 200 ~---~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 200 A---EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ 276 (609)
T ss_pred e---eecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc
Confidence 2 2444333 33344445567788877443 12 2356889999999964 444111 12
Q ss_pred eEEEEecCCCC-ceeeccCCCCCCCCeEEEecCceEE
Q 005559 239 RLVVNNTNFSS-PVIDESCESALPPEQIAWCGMDSVL 274 (691)
Q Consensus 239 ~i~I~ssd~~~-~l~e~d~~~~~~p~q~~WCG~davv 274 (691)
++.|..+|..+ -++. ..+.+.|.+.|+-+|+
T Consensus 277 R~~V~k~D~N~~GY~N-----~~T~KS~~F~~D~~v~ 308 (609)
T KOG4227|consen 277 RCFVLKSDHNPNGYCN-----IKTIKSMTFIDDYTVA 308 (609)
T ss_pred cceeEeccCCCCccee-----eeeeeeeeeecceeee
Confidence 44455555332 1221 1244567776655543
No 267
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.29 E-value=1.2 Score=49.43 Aligned_cols=192 Identities=9% Similarity=0.010 Sum_probs=109.9
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhc---ccCCCeEEEEcC-CCceeEEEEecCCCCCEE-EEEecCCCeEEEEEeCC
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYA---ESALRKLRIFNS-AGVLISETVWKNPGGRLI-GMSWSEDQTLICVVQDG 108 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~---~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv-~~~fs~de~Lv~v~~DG 108 (691)
+.+.+.+||.|..+.+..++.+.-.-.. -..++.+.+|+. +|.++.+++....+--.. -+.||-++.++.=.-..
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~ 152 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS 152 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence 4567889999999999887665321111 124567999996 788999988866321133 46789899886322333
Q ss_pred eEEEEeCCCCeeccccCCCccccccCeEEEEEeCC--ce--EEEecC-C---eEEEEecCCCceEEEcCCC-CcCCCCce
Q 005559 109 TVYRYNIHAELIEPNASMGKECFEENVVECVFWGN--GV--VCVTEA-N---RYFCMADFATMKVCELARP-EVEELPHC 179 (691)
Q Consensus 109 tV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~--G~--vllt~~-~---~~~~v~n~~~~~~~~l~~~-~l~~~~~~ 179 (691)
.+.+|.+.+++.+..+..- +..+|.+..|+|. +- +..|.. + -.+.++.+....+....+. ....-.-.
T Consensus 153 sl~i~e~t~n~~~~p~~~l---r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 153 SLYIHEITDNIEEHPFKNL---RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred eEEEEecCCccccCchhhc---cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 4888988666654333211 1356888888874 33 333311 1 1222333221111111100 01011345
Q ss_pred EEEecCCcCCCCCeEEEEEe-----------CCeEEEEecCCcc-c---ccCCCeeEEEECCCCCEEEEEe
Q 005559 180 VAVIEPKYTMTGSVEVLIGT-----------DAGILMLDEDGVQ-K---VDDTLSQKMAVSPNGNFVACFT 235 (691)
Q Consensus 180 w~vi~~~~S~d~~~~vl~s~-----------d~ti~l~d~~~~~-~---~~~~~i~~Ia~SpnG~~IAl~t 235 (691)
|.+ .|..++.+.. ++++|+++.++.. + ...+||+..+++|.++..|..+
T Consensus 230 W~~-------~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 230 WQV-------LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred Eec-------CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEe
Confidence 654 4444433321 3478898888655 2 3479999999999998666554
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.28 E-value=0.95 Score=54.95 Aligned_cols=98 Identities=20% Similarity=0.355 Sum_probs=60.5
Q ss_pred CCceEEEe-----cCC-eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEe---CCeEEEEecCCcc
Q 005559 142 GNGVVCVT-----EAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT---DAGILMLDEDGVQ 212 (691)
Q Consensus 142 ~~G~vllt-----~~~-~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~---d~ti~l~d~~~~~ 212 (691)
++|..+++ .++ +-+.|++-++. +.....|.. ...++.+ +-|+|+.++.+-. +++|..+..+|-.
T Consensus 205 gDg~~fAVs~~~~~~~~RkirV~drEg~-Lns~se~~~-~l~~~Ls-----WkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 205 GDGEYFAVSFVESETGTRKIRVYDREGA-LNSTSEPVE-GLQHSLS-----WKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred cCCcEEEEEEEeccCCceeEEEecccch-hhcccCccc-cccccee-----ecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 68855555 444 66666665522 222222211 1123332 2257887777754 5578888888765
Q ss_pred --------cccCCCeeEEEECCCCCEEEEEeeC---CeEEEEecC
Q 005559 213 --------KVDDTLSQKMAVSPNGNFVACFTHD---GRLVVNNTN 246 (691)
Q Consensus 213 --------~~~~~~i~~Ia~SpnG~~IAl~t~d---g~i~I~ssd 246 (691)
+....++..++++.|+..||.-+.. ..|.+|.+.
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec
Confidence 2455669999999999999996543 458899764
No 269
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.22 E-value=1.6 Score=49.02 Aligned_cols=141 Identities=18% Similarity=0.316 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEE
Q 005559 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVY 111 (691)
Q Consensus 32 ~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ 111 (691)
++.-..++.+|+|..|++.. ++...||+..+-.-.. . |.-.++.|.++++.++...+++|+
T Consensus 32 ~~~p~~ls~npngr~v~V~g-------------~geY~iyt~~~~r~k~-~-----G~g~~~vw~~~n~yAv~~~~~~I~ 92 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-------------DGEYEIYTALAWRNKA-F-----GSGLSFVWSSRNRYAVLESSSTIK 92 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-------------TTEEEEEETTTTEEEE-E-----EE-SEEEE-TSSEEEEE-TTS-EE
T ss_pred CcCCeeEEECCCCCEEEEEc-------------CCEEEEEEccCCcccc-c-----CceeEEEEecCccEEEEECCCeEE
Confidence 44567899999999999963 6889999955433322 2 345567799999999999999999
Q ss_pred EE-eCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCCc-eEEEcCCCCcCCCCceEEEecCCcCC
Q 005559 112 RY-NIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTM 189 (691)
Q Consensus 112 ly-~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~~-~~~~l~~~~l~~~~~~w~vi~~~~S~ 189 (691)
+| ++.++... ++..+ .. .+ ++++ |.++...+.+++.+.+++.. .++++.- +.+-.|+ +|+
T Consensus 93 I~kn~~~~~~k-~i~~~-----~~-~~-~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v------~~vk~V~---Ws~ 154 (443)
T PF04053_consen 93 IYKNFKNEVVK-SIKLP-----FS-VE-KIFG-GNLLGVKSSDFICFYDWETGKLIRRIDV------SAVKYVI---WSD 154 (443)
T ss_dssp EEETTEE-TT------S-----S--EE-EEE--SSSEEEEETTEEEEE-TTT--EEEEESS-------E-EEEE---E-T
T ss_pred EEEcCccccce-EEcCC-----cc-cc-eEEc-CcEEEEECCCCEEEEEhhHcceeeEEec------CCCcEEE---EEC
Confidence 97 55443322 33222 01 22 5677 76666656567777787743 4444432 2223342 667
Q ss_pred CCCeEEEEEeCCeEEEEecCC
Q 005559 190 TGSVEVLIGTDAGILMLDEDG 210 (691)
Q Consensus 190 d~~~~vl~s~d~ti~l~d~~~ 210 (691)
+|+.+++++.+ ++++++.+.
T Consensus 155 ~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 155 DGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp TSSEEEEE-S--SEEEEEE-H
T ss_pred CCCEEEEEeCC-eEEEEEecc
Confidence 88888888644 578877663
No 270
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.21 E-value=1.2 Score=50.40 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=52.6
Q ss_pred CcCCCCCeEEEEEeCCeEEEEecCCcc-cccC--CCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCc
Q 005559 186 KYTMTGSVEVLIGTDAGILMLDEDGVQ-KVDD--TLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP 250 (691)
Q Consensus 186 ~~S~d~~~~vl~s~d~ti~l~d~~~~~-~~~~--~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~ 250 (691)
.++|+....++...||+|.+||.+... .... -..+.++++|+|..++.+++.|.+++++..++..
T Consensus 266 a~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 266 ARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred ecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcc
Confidence 467899999999999999999987554 2222 2346899999999999999999999998766544
No 271
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.13 Score=59.60 Aligned_cols=179 Identities=17% Similarity=0.306 Sum_probs=103.3
Q ss_pred CEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCcccccc-CeEEEEEeCCceEEEecCCeEEEEecCCCceEEE
Q 005559 89 RLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEE-NVVECVFWGNGVVCVTEANRYFCMADFATMKVCE 167 (691)
Q Consensus 89 ~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~-~V~~~~~~~~G~vllt~~~~~~~v~n~~~~~~~~ 167 (691)
.+.+..++ +..+..++-+|.|++++.+|+. ...+.+.....++ -|..| +.+|.+++++.+. + ++.....
T Consensus 41 ~is~~av~-~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~~~~Gey~asC--S~DGkv~I~sl~~-----~-~~~~~~d 110 (846)
T KOG2066|consen 41 AISCCAVH-DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSSILEGEYVASC--SDDGKVVIGSLFT-----D-DEITQYD 110 (846)
T ss_pred HHHHHHhh-cceeeeccccceEEEEecCCcc-cccccccccccCCceEEEe--cCCCcEEEeeccC-----C-ccceeEe
Confidence 45556665 6668899999999999999997 3244432110011 13332 5677666654432 0 0011111
Q ss_pred cCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecC--Ccc-----cccCCCeeEEEECCCCCEEEEEeeCCeE
Q 005559 168 LARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED--GVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRL 240 (691)
Q Consensus 168 l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~--~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i 240 (691)
+.. .+.. -.+.|+||-..+.-++.+....+++...+ |.. ....|||++| +.+|.+||.++++| +
T Consensus 111 f~r-----piks-ial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i--~W~g~lIAWand~G-v 181 (846)
T KOG2066|consen 111 FKR-----PIKS-IALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSI--KWRGNLIAWANDDG-V 181 (846)
T ss_pred cCC-----ccee-EEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEE--EecCcEEEEecCCC-c
Confidence 221 1222 34566766443333333333335554333 211 2356888655 55788999999887 5
Q ss_pred EEEecCCCCceeec--cC---CCCCCCCeEEEecCceEEEEEcCeEEEEcC
Q 005559 241 VVNNTNFSSPVIDE--SC---ESALPPEQIAWCGMDSVLLYWNDMLVMVAP 286 (691)
Q Consensus 241 ~I~ssd~~~~l~e~--d~---~~~~~p~q~~WCG~davvl~~~~~l~liGp 286 (691)
+|++..+++.+... +. ....-|-++.|-.++.+|+-|.+.+.+..-
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I 232 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSI 232 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEE
Confidence 67888777776532 21 223345699999999999999998776643
No 272
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.042 Score=61.32 Aligned_cols=165 Identities=13% Similarity=0.114 Sum_probs=107.8
Q ss_pred CCeEEEEcCC----Cce--eEEEEecCCCCCEEEEEecCCCe-EEEEEeC---CeEEEEeCCCCeeccccCCCccccccC
Q 005559 65 LRKLRIFNSA----GVL--ISETVWKNPGGRLIGMSWSEDQT-LICVVQD---GTVYRYNIHAELIEPNASMGKECFEEN 134 (691)
Q Consensus 65 ~~~I~Iys~s----G~l--l~si~~~~~~~~Iv~~~fs~de~-Lv~v~~D---GtV~ly~~~G~~~~~sl~~~~~~~~~~ 134 (691)
+..+-.|+.. ++. -..|. +. ..|..|.|...|+ |.+|..+ ..|.|+.+.-...+..|... .+.
T Consensus 496 ~~~~~~W~~~~~~e~~~~v~~~I~-~~--k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks----kG~ 568 (733)
T KOG0650|consen 496 DAAVVTWSRASLDELEKGVCIVIK-HP--KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS----KGL 568 (733)
T ss_pred cccceeechhhhhhhccceEEEEe-cC--CccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhc----CCc
Confidence 5567788876 221 12333 33 5799999999998 5566654 34777777533333234322 456
Q ss_pred eEEEEEeCCceEEEecCCeEEEEecCCCc-eEEEc-CCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc
Q 005559 135 VVECVFWGNGVVCVTEANRYFCMADFATM-KVCEL-ARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ 212 (691)
Q Consensus 135 V~~~~~~~~G~vllt~~~~~~~v~n~~~~-~~~~l-~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~ 212 (691)
|..++|.|.--.++.++.+-+.+.|+... .+.++ ++. --.+.++| ++.|..+++.+.|+.+.-+|.+-..
T Consensus 569 vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~---kwiS~msi-----hp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 569 VQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGS---KWISSMSI-----HPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred eeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCC---eeeeeeee-----cCCCCeEEEecCCCeeEEEEcccCc
Confidence 88999998554444444444444454322 11112 110 01445554 4689999999999998888888442
Q ss_pred ------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 213 ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 213 ------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
+.|...+..|+|.+...+.|+++.||++.|.-
T Consensus 641 kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 641 KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 57888899999999999999999999998764
No 273
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.0068 Score=66.51 Aligned_cols=173 Identities=11% Similarity=0.146 Sum_probs=103.7
Q ss_pred EEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCC--e-----eccccCCCccccccCeEEEEEe
Q 005559 70 IFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAE--L-----IEPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 70 Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~--~-----~~~sl~~~~~~~~~~V~~~~~~ 141 (691)
-++-+--.+.++.+|+ ..|..+.=-.+|. .++++.|.||++|++..+ - -++++..| ...|.+.-|-
T Consensus 720 ~ln~~~irL~nf~GH~--~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aH----kk~i~~igfL 793 (1034)
T KOG4190|consen 720 NLNFDHIRLCNFTGHQ--EKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAH----KKPIHDIGFL 793 (1034)
T ss_pred ccccceeeeecccCcH--HHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhc----cCcccceeee
Confidence 3344444456667777 6677776666666 789999999999977532 1 24566666 4457776666
Q ss_pred CCceEEEecCCeEEEEecCCCceEEEcCC-CCcCCCCceEEEecCCcCCCCCeEEEE-EeCCeEEEEecCCcc-------
Q 005559 142 GNGVVCVTEANRYFCMADFATMKVCELAR-PEVEELPHCVAVIEPKYTMTGSVEVLI-GTDAGILMLDEDGVQ------- 212 (691)
Q Consensus 142 ~~G~vllt~~~~~~~v~n~~~~~~~~l~~-~~l~~~~~~w~vi~~~~S~d~~~~vl~-s~d~ti~l~d~~~~~------- 212 (691)
.+---+++-++.+..+.-+-+..+-++-+ |..+......++ + +-++...+.. +...||+++|...+.
T Consensus 794 ~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl-~---nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 794 ADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL-E---NVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred eccceeeeccCcceeecccccchhHhhhcCcccCCCceeEec-c---cCcchheeeeccchhhheeeecccccceeeEEe
Confidence 55444555555444433332222222211 111111222222 2 1133333333 458899999998765
Q ss_pred ---cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCcee
Q 005559 213 ---KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (691)
Q Consensus 213 ---~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~ 252 (691)
.+.++-+..+++-|.|+.+|.+-.+|.|-+.+.--+.++.
T Consensus 870 cna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred ccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence 2334558899999999999999889999888776566553
No 274
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.14 E-value=0.24 Score=53.10 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=30.5
Q ss_pred ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeecc
Q 005559 214 VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES 255 (691)
Q Consensus 214 ~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d 255 (691)
+|..-|..|++-+|. .|.+++.|+++++|+-.-++.+.++|
T Consensus 192 GH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 192 GHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence 355667888888885 68888889999999865566666665
No 275
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.06 E-value=0.51 Score=47.55 Aligned_cols=173 Identities=12% Similarity=0.077 Sum_probs=93.9
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEe-CCCCeeccccCCCccccc-cCeEEEEE
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYN-IHAELIEPNASMGKECFE-ENVVECVF 140 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~-~~G~~~~~sl~~~~~~~~-~~V~~~~~ 140 (691)
.++.|..|+. +|+++++..... .+...-...++.++++..||.++.+| ..|+.+-.......+... .......+
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~~~---~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 120 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDLPG---PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV 120 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEECSS---CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE
T ss_pred CCCEEEEEECCCCCEEEEeeccc---cccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE
Confidence 6899999996 999999999744 22211244578888888999999999 579875421111111001 01122333
Q ss_pred eCCceEEEecCCeEEEEecCCCceEEEcCC--CCcCCC------CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc
Q 005559 141 WGNGVVCVTEANRYFCMADFATMKVCELAR--PEVEEL------PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ 212 (691)
Q Consensus 141 ~~~G~vllt~~~~~~~v~n~~~~~~~~l~~--~~l~~~------~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~ 212 (691)
.++.+++.+.++.++.++--.+...|..+- ++.... ...-.++ ++..+...+.++.++.+|.....
T Consensus 121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI------SDGRVYVSSGDGRVVAVDLATGE 194 (238)
T ss_dssp ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC------CTTEEEEECCTSSEEEEETTTTE
T ss_pred ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE------ECCEEEEEcCCCeEEEEECCCCC
Confidence 445566666688888887555666666642 111000 0111121 22344444445545555655332
Q ss_pred c---ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 213 K---VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 213 ~---~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
. ...+.+.. .+.++|..|.+.+.+|++..++..
T Consensus 195 ~~w~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 195 KLWSKPISGIYS-LPSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EEEEECSS-ECE-CEECCCTEEEEEETTTEEEEEETT
T ss_pred EEEEecCCCccC-CceeeCCEEEEEeCCCEEEEEECC
Confidence 1 11112111 145677777777777888777654
No 276
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=96.04 E-value=0.23 Score=58.92 Aligned_cols=157 Identities=10% Similarity=0.047 Sum_probs=100.1
Q ss_pred CCEEEEEecCCC-eEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCc---eEEEecC-CeEEEEecCC-
Q 005559 88 GRLIGMSWSEDQ-TLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNG---VVCVTEA-NRYFCMADFA- 161 (691)
Q Consensus 88 ~~Iv~~~fs~de-~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G---~vllt~~-~~~~~v~n~~- 161 (691)
++|.+-.+..++ ++++++.+..+.+|++.+.-.-...+.. | ......+.+++++ +-+..++ ..-..+|...
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~-e--r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~ 164 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSD-E--RCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE 164 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCC-c--eEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence 344443344343 4578999999999999755432233322 1 2223455666533 3333333 2333445432
Q ss_pred CceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEe
Q 005559 162 TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFT 235 (691)
Q Consensus 162 ~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t 235 (691)
...+..+.. +...+..+ .+|.||..++.+|.|.++.+|..+... -.|...+.++.|+|| .|++.+
T Consensus 165 dn~p~~l~G----HeG~iF~i---~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~g 235 (967)
T KOG0974|consen 165 DNKPIRLKG----HEGSIFSI---VTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVG 235 (967)
T ss_pred cCCcceecc----cCCceEEE---EEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEec
Confidence 111112221 33455555 688999999999999999999998655 257888999999999 899999
Q ss_pred eCCeEEEEecCCCCceeeccCC
Q 005559 236 HDGRLVVNNTNFSSPVIDESCE 257 (691)
Q Consensus 236 ~dg~i~I~ssd~~~~l~e~d~~ 257 (691)
+|-|..+|+-+ ...+.+|+.+
T Consensus 236 edctcrvW~~~-~~~l~~y~~h 256 (967)
T KOG0974|consen 236 EDCTCRVWGVN-GTQLEVYDEH 256 (967)
T ss_pred cceEEEEEecc-cceehhhhhh
Confidence 99999999655 5555566543
No 277
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=0.14 Score=60.84 Aligned_cols=172 Identities=13% Similarity=0.118 Sum_probs=107.1
Q ss_pred CCeEEEEcCCCc-eeEEEEecCCCCCEEEEEecC-CCe-EEEEEeCCeEEEEeCCCCe----eccccCCCccccccCeEE
Q 005559 65 LRKLRIFNSAGV-LISETVWKNPGGRLIGMSWSE-DQT-LICVVQDGTVYRYNIHAEL----IEPNASMGKECFEENVVE 137 (691)
Q Consensus 65 ~~~I~Iys~sG~-ll~si~~~~~~~~Iv~~~fs~-de~-Lv~v~~DGtV~ly~~~G~~----~~~sl~~~~~~~~~~V~~ 137 (691)
-..|+||+..-+ ....|+..+. .-|.++.=+. .|. ++.+..||.||+||..--. .. ....|.. ..+|+.
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~-~~R~h~~--~~~Iv~ 1261 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC-VYREHND--VEPIVH 1261 (1387)
T ss_pred eeEEEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCccccce-eecccCC--ccccee
Confidence 578999998754 5677887662 3466665543 345 5689999999999875322 22 2233322 234999
Q ss_pred EEEeCCceE-EEecC-CeEEEEecCCC-ceEEEcCCC-C--cCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCc
Q 005559 138 CVFWGNGVV-CVTEA-NRYFCMADFAT-MKVCELARP-E--VEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV 211 (691)
Q Consensus 138 ~~~~~~G~v-llt~~-~~~~~v~n~~~-~~~~~l~~~-~--l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~ 211 (691)
+.+-.+|.. +++++ ..-+.++++.. ++...+... + .++.-+++.|- ....+++..+. +.|.+|+..|.
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH-----~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH-----EHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeec-----cCCCeeeecCc-ceEEEEecChh
Confidence 999887766 55544 22344455543 221111100 0 11113444442 23334444444 78999999877
Q ss_pred c-----------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 212 Q-----------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 212 ~-----------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
+ ....+++..++|.|---++|.++.|.++-|++..
T Consensus 1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 6 1345778999999999899999999999998754
No 278
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.95 E-value=0.022 Score=62.88 Aligned_cols=151 Identities=16% Similarity=0.161 Sum_probs=88.0
Q ss_pred eEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeC--CceEEEecCC-e
Q 005559 78 ISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWG--NGVVCVTEAN-R 153 (691)
Q Consensus 78 l~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~--~G~vllt~~~-~ 153 (691)
-..+.+|+ |=|-++.|+.||.| +++++|-.+.|||++-..+.+++..+- ...|..+||-| +.-.++|+.+ .
T Consensus 43 E~eL~GH~--GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH---taNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 43 EAELTGHT--GCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGH---TANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhhcccc--ceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccc---ccceeEEeeeccCCCeEEEeccCcc
Confidence 34567888 89999999999996 588999999999998544333443221 46699999976 4455556554 4
Q ss_pred EEEEecCCCceEEEcCCCCcCCCCceEEEecC-----CcCCCC-CeEEEEEeCCeEEEEecCCcc-cccCCCeeEEEECC
Q 005559 154 YFCMADFATMKVCELARPEVEELPHCVAVIEP-----KYTMTG-SVEVLIGTDAGILMLDEDGVQ-KVDDTLSQKMAVSP 226 (691)
Q Consensus 154 ~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~-----~~S~d~-~~~vl~s~d~ti~l~d~~~~~-~~~~~~i~~Ia~Sp 226 (691)
++.+-|++..+-.-..+ +......+|..-.. .--|++ .+.-.++.|||+...|..+.. -.+.+.+..+..+-
T Consensus 118 ~i~lfdl~~~~~~~~d~-~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDH-GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred eEEEEeccccccccccc-CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 66666654322111111 01012345542100 000233 344455567777777766544 23445577777777
Q ss_pred CCCEEEEE
Q 005559 227 NGNFVACF 234 (691)
Q Consensus 227 nG~~IAl~ 234 (691)
++++|-+.
T Consensus 197 ~~~lielk 204 (758)
T KOG1310|consen 197 NPQLIELK 204 (758)
T ss_pred chhhheee
Confidence 77764443
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.66 Score=54.31 Aligned_cols=134 Identities=16% Similarity=0.184 Sum_probs=79.2
Q ss_pred CC-eEEEEcCC---Cce---------eEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEE--eCC---CCeeccccC
Q 005559 65 LR-KLRIFNSA---GVL---------ISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRY--NIH---AELIEPNAS 125 (691)
Q Consensus 65 ~~-~I~Iys~s---G~l---------l~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly--~~~---G~~~~~sl~ 125 (691)
.+ .|+||+.+ |+- +.+++....+.++-.+.-+.+-+. ||+..||+|..| |+- |... .+.
T Consensus 90 np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~--~~~ 167 (933)
T KOG2114|consen 90 NPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQ--DYS 167 (933)
T ss_pred CceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccce--eee
Confidence 45 89999863 322 222222211245667777777664 689999999998 442 3322 222
Q ss_pred CCccccccCeEEEEEeCCceE---EEecCC-eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCC
Q 005559 126 MGKECFEENVVECVFWGNGVV---CVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA 201 (691)
Q Consensus 126 ~~~~~~~~~V~~~~~~~~G~v---llt~~~-~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ 201 (691)
+. ....|....+..+|.. ++|.+. +.|.+.+-. |....+.+.+. .-.||+. .++...++.+.+.
T Consensus 168 ~~---~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~--~lnCss~------~~~t~qfIca~~e 235 (933)
T KOG2114|consen 168 HR---GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGI--SLNCSSF------SDGTYQFICAGSE 235 (933)
T ss_pred cc---CCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cceeeeccCCc--cceeeec------CCCCccEEEecCc
Confidence 21 1466888788776654 334332 577776543 66666654321 2477765 2344457777788
Q ss_pred eEEEEecCCcc
Q 005559 202 GILMLDEDGVQ 212 (691)
Q Consensus 202 ti~l~d~~~~~ 212 (691)
.++.++.++..
T Consensus 236 ~l~fY~sd~~~ 246 (933)
T KOG2114|consen 236 FLYFYDSDGRG 246 (933)
T ss_pred eEEEEcCCCcc
Confidence 89999988754
No 280
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.66 Score=49.72 Aligned_cols=153 Identities=8% Similarity=0.088 Sum_probs=97.0
Q ss_pred CCEEEEEecCCCe-EE-EEEeC--CeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEec--CCeEEEEecCC
Q 005559 88 GRLIGMSWSEDQT-LI-CVVQD--GTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTE--ANRYFCMADFA 161 (691)
Q Consensus 88 ~~Iv~~~fs~de~-Lv-~v~~D--GtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~--~~~~~~v~n~~ 161 (691)
+.+..|.=++... ++ .++.. .-+++||+++- .+ .+.....+.+.-=..+-+|..++.++.. .++|..++...
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-~q-iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h 226 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-KQ-IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH 226 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccc-ee-eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecce
Confidence 4678888776544 43 35555 56899999765 23 3332111001112355678888888777 45555555543
Q ss_pred CceEEEcC-------CCCcCCC-CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCC
Q 005559 162 TMKVCELA-------RPEVEEL-PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPN 227 (691)
Q Consensus 162 ~~~~~~l~-------~~~l~~~-~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~Spn 227 (691)
.-+++... ..+..+. .++.... |+|..+.+...-+.+..+|..+.. ..-.|.+..|-..|+
T Consensus 227 qvR~YDt~~qRRPV~~fd~~E~~is~~~l~-----p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~ 301 (412)
T KOG3881|consen 227 QVRLYDTRHQRRPVAQFDFLENPISSTGLT-----PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT 301 (412)
T ss_pred eEEEecCcccCcceeEeccccCcceeeeec-----CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCC
Confidence 22222211 1111122 3554443 588888888888888999988554 345688999999999
Q ss_pred CCEEEEEeeCCeEEEEecCC
Q 005559 228 GNFVACFTHDGRLVVNNTNF 247 (691)
Q Consensus 228 G~~IAl~t~dg~i~I~ssd~ 247 (691)
++++|+.+-|..++|...+-
T Consensus 302 ~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 302 HPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CceEEeeccceeEEEeeccc
Confidence 99999999999999988764
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.71 E-value=1.6 Score=44.61 Aligned_cols=184 Identities=21% Similarity=0.259 Sum_probs=104.3
Q ss_pred EEEecC-CCeEEEEE-eCCeEEEEeCCCCeeccccCCCccccccCeEEEEEe-CCceEEEecCCeEEEEecCCCceEEEc
Q 005559 92 GMSWSE-DQTLICVV-QDGTVYRYNIHAELIEPNASMGKECFEENVVECVFW-GNGVVCVTEANRYFCMADFATMKVCEL 168 (691)
Q Consensus 92 ~~~fs~-de~Lv~v~-~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~-~~G~vllt~~~~~~~v~n~~~~~~~~l 168 (691)
+..|.+ ++.|..+. .+|.|..|++.+.... .+.. .....+.+. ++|.++++..+.+..+ +..+.....+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~------~~~~G~~~~~~~g~l~v~~~~~~~~~-d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDL------PGPNGMAFDRPDGRLYVADSGGIAVV-DPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEES------SSEEEEEEECTTSEEEEEETTCEEEE-ETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEec------CCCceEEEEccCCEEEEEEcCceEEE-ecCCCcEEEE
Confidence 456887 77776655 5888999999876544 2221 125666777 7888888888776666 5555444444
Q ss_pred CCCCcCC----CCceEEEecCCcCCCCCeEEEEEeC--------CeEEEEecCCcc---cccCCCeeEEEECCCCCEEEE
Q 005559 169 ARPEVEE----LPHCVAVIEPKYTMTGSVEVLIGTD--------AGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVAC 233 (691)
Q Consensus 169 ~~~~l~~----~~~~w~vi~~~~S~d~~~~vl~s~d--------~ti~l~d~~~~~---~~~~~~i~~Ia~SpnG~~IAl 233 (691)
...+... .|...+ ++++|...+.-... +.|+.++.++.. ......-..|++||+|+.|-.
T Consensus 76 ~~~~~~~~~~~~~ND~~-----vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv 150 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVA-----VDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYV 150 (246)
T ss_dssp EEEETTCSCTEEEEEEE-----E-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEE
T ss_pred eeccCCCcccCCCceEE-----EcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheee
Confidence 3221011 133333 34688866655543 569999998544 112333468999999987643
Q ss_pred -EeeCCeEEEEecCCCCc-------eeeccCCCCCCCCeEEEecCceEEEE-E-cCeEEEEcCCCC
Q 005559 234 -FTHDGRLVVNNTNFSSP-------VIDESCESALPPEQIAWCGMDSVLLY-W-NDMLVMVAPQAE 289 (691)
Q Consensus 234 -~t~dg~i~I~ssd~~~~-------l~e~d~~~~~~p~q~~WCG~davvl~-~-~~~l~liGp~~~ 289 (691)
-+..++|+.+..+-... +.++... ...|..|+.-.+..+.+. | ...|..+-|.|.
T Consensus 151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK 215 (246)
T ss_dssp EETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC
T ss_pred cccccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc
Confidence 34467888776542222 1122211 123666766544444332 2 345666666654
No 282
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.64 E-value=3.4 Score=43.78 Aligned_cols=197 Identities=15% Similarity=0.146 Sum_probs=106.5
Q ss_pred CCEEEEcC-CCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEE--EEEecCCCeEEEEEe----
Q 005559 35 RNKVACAP-FGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLI--GMSWSEDQTLICVVQ---- 106 (691)
Q Consensus 35 ~~~vA~sp-~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv--~~~fs~de~Lv~v~~---- 106 (691)
-+-++++| .+..+|.+|-| -....+|+. +|+.+..+.-.. ++-. .-.||+||+++..++
T Consensus 7 gH~~a~~p~~~~avafaRRP-----------G~~~~v~D~~~g~~~~~~~a~~--gRHFyGHg~fs~dG~~LytTEnd~~ 73 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRP-----------GTFALVFDCRTGQLLQRLWAPP--GRHFYGHGVFSPDGRLLYTTENDYE 73 (305)
T ss_pred ccceeeCCCCCeEEEEEeCC-----------CcEEEEEEcCCCceeeEEcCCC--CCEEecCEEEcCCCCEEEEeccccC
Confidence 35678899 67777778743 456777776 677777665332 3321 234999999876665
Q ss_pred --CCeEEEEeCCCCeecc-ccCCCccccccCeEEEEEeCCceEEEecCCe--------------------EEEEecCCCc
Q 005559 107 --DGTVYRYNIHAELIEP-NASMGKECFEENVVECVFWGNGVVCVTEANR--------------------YFCMADFATM 163 (691)
Q Consensus 107 --DGtV~ly~~~G~~~~~-sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~--------------------~~~v~n~~~~ 163 (691)
.|.|-|||....+.+. .++.+ -.+=.++.+.++|-.++..++- +.+++..++.
T Consensus 74 ~g~G~IgVyd~~~~~~ri~E~~s~----GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 74 TGRGVIGVYDAARGYRRIGEFPSH----GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred CCcEEEEEEECcCCcEEEeEecCC----CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc
Confidence 5889999998444220 12211 1123466778898555554443 2222222222
Q ss_pred eEEE--cCCCCcC-CCCceEEEecCCcCCCCCeEEEEEeCC-------eEEEEecCCcc----------cccCCCeeEEE
Q 005559 164 KVCE--LARPEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDA-------GILMLDEDGVQ----------KVDDTLSQKMA 223 (691)
Q Consensus 164 ~~~~--l~~~~l~-~~~~~w~vi~~~~S~d~~~~vl~s~d~-------ti~l~d~~~~~----------~~~~~~i~~Ia 223 (691)
.+.+ ++. ... -...+.++ +.+|.+.+-.-..+ -|.+++.++.. ..-.+-+-+|+
T Consensus 150 ll~q~~Lp~-~~~~lSiRHLa~-----~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa 223 (305)
T PF07433_consen 150 LLEQVELPP-DLHQLSIRHLAV-----DGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIA 223 (305)
T ss_pred eeeeeecCc-cccccceeeEEe-----cCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEE
Confidence 2211 110 000 01333333 12333222221111 23334443322 12235677999
Q ss_pred ECCCCCEEEEEeeC-CeEEEEecCCCCceeec
Q 005559 224 VSPNGNFVACFTHD-GRLVVNNTNFSSPVIDE 254 (691)
Q Consensus 224 ~SpnG~~IAl~t~d-g~i~I~ssd~~~~l~e~ 254 (691)
++++|..+|..+.- |.+.+|+..-++.+...
T Consensus 224 ~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 224 ADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred EeCCCCEEEEECCCCCEEEEEECCCCCEeecc
Confidence 99999999998876 57788977656665443
No 283
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=95.58 E-value=0.53 Score=50.29 Aligned_cols=157 Identities=11% Similarity=0.046 Sum_probs=94.7
Q ss_pred EecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCeec---cccCCCccccccCeEEEEEeC-CceEEEecCCeEEE
Q 005559 82 VWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIE---PNASMGKECFEENVVECVFWG-NGVVCVTEANRYFC 156 (691)
Q Consensus 82 ~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~~~---~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~~~~~~ 156 (691)
..|. |-|-++.||.+++ |+++++|-.+++|++.--... ..++...+.-...|....|-- |-+++--+....+.
T Consensus 53 ~~H~--GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 53 REHT--GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhc--cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 3455 7899999999999 678999999999988632211 112211111134566666643 33333333334556
Q ss_pred EecCCCce-EEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc--------cccCCCeeEEEECCC
Q 005559 157 MADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDTLSQKMAVSPN 227 (691)
Q Consensus 157 v~n~~~~~-~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~--------~~~~~~i~~Ia~Spn 227 (691)
..+++... +..+..-.-.+..-++ +.+|...+.+..+.++.|..||..+.+ ......|..+-|.|-
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m-----~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHM-----DQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eeecccceeeeeecccCcccceeec-----ccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 66666443 3333211000112222 445677788888889999999988765 124456888899987
Q ss_pred C-CEEEEEeeCCeEEEEec
Q 005559 228 G-NFVACFTHDGRLVVNNT 245 (691)
Q Consensus 228 G-~~IAl~t~dg~i~I~ss 245 (691)
- .+||+.+..|-.-+|..
T Consensus 206 ~P~Li~~~~~~~G~~~~D~ 224 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDR 224 (609)
T ss_pred CceeEEeccccCCCCceee
Confidence 6 46777777776666654
No 284
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.51 E-value=0.21 Score=55.79 Aligned_cols=159 Identities=16% Similarity=0.209 Sum_probs=95.3
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEE---EEEeCCe--EEEEeCC-CCeec-cccCCCccccccCeE
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLI---CVVQDGT--VYRYNIH-AELIE-PNASMGKECFEENVV 136 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv---~v~~DGt--V~ly~~~-G~~~~-~sl~~~~~~~~~~V~ 136 (691)
....+.+=+.+|.-...+.-.. ..+..=.|+|+++.+ .....++ +.++++. |+-.+ .++... -.
T Consensus 171 ~~~~l~~~D~dg~~~~~l~~~~--~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~-------~~ 241 (425)
T COG0823 171 LPYELALGDYDGYNQQKLTDSG--SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN-------NG 241 (425)
T ss_pred CCceEEEEccCCcceeEecccC--cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc-------cC
Confidence 3455555556666655555433 467778899998852 3334443 5666774 32211 122211 12
Q ss_pred EEEEeCCceEE-EecCC----eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCC---eEEEEec
Q 005559 137 ECVFWGNGVVC-VTEAN----RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDA---GILMLDE 208 (691)
Q Consensus 137 ~~~~~~~G~vl-lt~~~----~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~---ti~l~d~ 208 (691)
.-+|+|+|.-+ ++... ++|.+ |+.+...++|.+ ..+++. .|.+||||+.+|+.+..+ .|++.+.
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~-dl~~~~~~~Lt~------~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~ 313 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLM-DLDGKNLPRLTN------GFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDL 313 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEE-cCCCCcceeccc------CCcccc-CccCCCCCCEEEEEeCCCCCcceEEECC
Confidence 33678888443 33222 35544 555555555543 233344 789999999999998843 6888888
Q ss_pred CCcc----cccCCCeeEEEECCCCCEEEEEeeC-Ce
Q 005559 209 DGVQ----KVDDTLSQKMAVSPNGNFVACFTHD-GR 239 (691)
Q Consensus 209 ~~~~----~~~~~~i~~Ia~SpnG~~IAl~t~d-g~ 239 (691)
++.. ....+....=.+||||++||+-+.+ |.
T Consensus 314 ~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~ 349 (425)
T COG0823 314 EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ 349 (425)
T ss_pred CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCc
Confidence 8775 2233333467899999999998854 44
No 285
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=95.37 E-value=4.3 Score=44.30 Aligned_cols=182 Identities=13% Similarity=0.089 Sum_probs=94.3
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeC-CCCeeccccCCCccccc-cCeEEEEE
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI-HAELIEPNASMGKECFE-ENVVECVF 140 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~-~~V~~~~~ 140 (691)
.++.+.-++. +|+++++..-. +.+.+---..++.+++...+|.+..||. .|+..- .+........ .......+
T Consensus 113 ~~g~l~ald~~tG~~~W~~~~~---~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W-~~~~~~~~~~~~~~~sp~~ 188 (377)
T TIGR03300 113 EKGEVIALDAEDGKELWRAKLS---SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLW-TYSRVTPALTLRGSASPVI 188 (377)
T ss_pred CCCEEEEEECCCCcEeeeeccC---ceeecCCEEECCEEEEECCCCeEEEEEcCCCceee-EEccCCCceeecCCCCCEE
Confidence 4678888886 79988876643 2222111112567778888999999998 687642 2211100000 00011122
Q ss_pred eCCceEEEe-cCCeEEEEecCCCceEEEcCCC-CcC-CCCce-EEEe-cCCcCCCCCeEEEEEeCCeEEEEecCC-cc--
Q 005559 141 WGNGVVCVT-EANRYFCMADFATMKVCELARP-EVE-ELPHC-VAVI-EPKYTMTGSVEVLIGTDAGILMLDEDG-VQ-- 212 (691)
Q Consensus 141 ~~~G~vllt-~~~~~~~v~n~~~~~~~~l~~~-~l~-~~~~~-w~vi-~~~~S~d~~~~vl~s~d~ti~l~d~~~-~~-- 212 (691)
.+ |.+++. .++.++.++-..+...|+.... +.. ..... ..+. +|. ..++.+.+.+.++.++.++... ..
T Consensus 189 ~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~--~~~~~vy~~~~~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 189 AD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPV--VDGGQVYAVSYQGRVAALDLRSGRVLW 265 (377)
T ss_pred EC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccE--EECCEEEEEEcCCEEEEEECCCCcEEE
Confidence 33 555444 4467777754445556654210 000 00000 1110 111 1355666677788999998753 22
Q ss_pred cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeec
Q 005559 213 KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDE 254 (691)
Q Consensus 213 ~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~ 254 (691)
......... +...+..|...+.+|.+..++.+-++.+.++
T Consensus 266 ~~~~~~~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 266 KRDASSYQG--PAVDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred eeccCCccC--ceEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 111111222 2234556777778899988887666666555
No 286
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.05 E-value=4.5 Score=41.83 Aligned_cols=161 Identities=13% Similarity=0.169 Sum_probs=88.0
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEe-CCeEEEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQ-DGTVYRY 113 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~-DGtV~ly 113 (691)
-..++..|+++.++.+.| .++.|-.++.+|+++.+++.... +..-++.+..++.++++.+ ++++.++
T Consensus 24 ~SGLTy~pd~~tLfaV~d-----------~~~~i~els~~G~vlr~i~l~g~-~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQD-----------EPGEIYELSLDGKVLRRIPLDGF-GDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EEEEEEETTTTEEEEEET-----------TTTEEEEEETT--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred ccccEEcCCCCeEEEEEC-----------CCCEEEEEcCCCCEEEEEeCCCC-CCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 357889998887777764 47889999999999999998764 6799999998888888775 8888888
Q ss_pred eC--CCCe------eccccCCCccccccCeEEEEEeC--CceEEEecC--CeEEEEecCCCc-eEE--E---cCCCCcC-
Q 005559 114 NI--HAEL------IEPNASMGKECFEENVVECVFWG--NGVVCVTEA--NRYFCMADFATM-KVC--E---LARPEVE- 174 (691)
Q Consensus 114 ~~--~G~~------~~~sl~~~~~~~~~~V~~~~~~~--~G~vllt~~--~~~~~v~n~~~~-~~~--~---l~~~~l~- 174 (691)
+. .++. .++.++.. ...+.++-.+..-+ +.++++... ..+|.+..+..+ ... . +......
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp EE----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred EEeccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 66 2321 12223222 01123344444433 445555444 246777653211 111 0 1100111
Q ss_pred CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc
Q 005559 175 ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ 212 (691)
Q Consensus 175 ~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~ 212 (691)
..++..++-| .+|...++-+.++.|..+|.+|..
T Consensus 171 ~d~S~l~~~p----~t~~lliLS~es~~l~~~d~~G~~ 204 (248)
T PF06977_consen 171 RDLSGLSYDP----RTGHLLILSDESRLLLELDRQGRV 204 (248)
T ss_dssp S---EEEEET----TTTEEEEEETTTTEEEEE-TT--E
T ss_pred ccccceEEcC----CCCeEEEEECCCCeEEEECCCCCE
Confidence 3367766643 367777777778888888888764
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=94.86 E-value=1.1 Score=45.96 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC--CCceeEEEEecCCCCCEEEEEecCC-CeEEEEEeCCe
Q 005559 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS--AGVLISETVWKNPGGRLIGMSWSED-QTLICVVQDGT 109 (691)
Q Consensus 33 l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~--sG~ll~si~~~~~~~~Iv~~~fs~d-e~Lv~v~~DGt 109 (691)
+.....++||+|...+.+.| -+.|..|.. +|..+-.+.-....+.=.+..|+.+ ++.+++++||+
T Consensus 159 ~~~ns~~~snd~~~~~~Vgd------------s~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~ 226 (344)
T KOG4532|consen 159 LTQNSLHYSNDPSWGSSVGD------------SRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT 226 (344)
T ss_pred cceeeeEEcCCCceEEEecC------------CCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc
Confidence 55678899999999999985 355677764 5766666544332246778889885 45689999999
Q ss_pred EEEEeCC--CCeec---cccCCCccccccCeEEEEEeCCc---eEEEecCC
Q 005559 110 VYRYNIH--AELIE---PNASMGKECFEENVVECVFWGNG---VVCVTEAN 152 (691)
Q Consensus 110 V~ly~~~--G~~~~---~sl~~~~~~~~~~V~~~~~~~~G---~vllt~~~ 152 (691)
+-|||.. |.... .+-+++ .+.|..|+|+..| +.+.++-.
T Consensus 227 ~~I~DVR~~~tpm~~~sstrp~h----nGa~R~c~Fsl~g~lDLLf~sEhf 273 (344)
T KOG4532|consen 227 CAIYDVRNMATPMAEISSTRPHH----NGAFRVCRFSLYGLLDLLFISEHF 273 (344)
T ss_pred EEEEEecccccchhhhcccCCCC----CCceEEEEecCCCcceEEEEecCc
Confidence 9999884 44322 133444 6779999999655 34444443
No 288
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.81 E-value=0.083 Score=35.08 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=30.7
Q ss_pred CceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEe
Q 005559 75 GVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN 114 (691)
Q Consensus 75 G~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~ 114 (691)
++.+.++..+. +.|.++.|.+++. +++++.||++++|+
T Consensus 2 ~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHT--GPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecC--CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 55667777666 7899999998766 46899999999995
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.80 E-value=5 Score=40.24 Aligned_cols=135 Identities=12% Similarity=0.114 Sum_probs=85.5
Q ss_pred CCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeC-CCCee-ccccCCCccccccCeEEEEEe
Q 005559 65 LRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI-HAELI-EPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 65 ~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~-~G~~~-~~sl~~~~~~~~~~V~~~~~~ 141 (691)
+++|..|+. +|+.+++.......+..+......++.+++...+|.+..||. .|+.+ ++.++.... .. ....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~----~~--~~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS----GA--PVVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG----SG--EEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc----ce--eeec
Confidence 578999997 999999998743113445434445777888889999999998 89874 334432211 11 2445
Q ss_pred CCceEEEecCCeEEEEecCCCceEEEc-CC--CCcC-CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecC-Ccc
Q 005559 142 GNGVVCVTEANRYFCMADFATMKVCEL-AR--PEVE-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED-GVQ 212 (691)
Q Consensus 142 ~~G~vllt~~~~~~~v~n~~~~~~~~l-~~--~~l~-~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~-~~~ 212 (691)
++.+++.+.++.++.++--.+...|+. .. ++.. ..+.... .++...++...++.|+.+|.. |..
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-------VDGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-------EETTEEEEEETCSEEEEEETTTTEE
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCce-------EecCEEEEEeccCcEEEEecCCCcE
Confidence 677777777788888876667778874 21 1111 0111112 246666666668899999955 444
No 290
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.14 Score=57.77 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=71.8
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEE-EEEecCCCeE-EEEEeCCeEEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLI-GMSWSEDQTL-ICVVQDGTVYRY 113 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv-~~~fs~de~L-v~v~~DGtV~ly 113 (691)
..+--+|---.||+.. .++.|-|+..+=+.|++|+.+. .++. +++|.|||+| +++.+||||++-
T Consensus 24 ~~~ewnP~~dLiA~~t------------~~gelli~R~n~qRlwtip~p~--~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 24 KRIEWNPKMDLIATRT------------EKGELLIHRLNWQRLWTIPIPG--ENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred EEEEEcCccchhheec------------cCCcEEEEEeccceeEeccCCC--CccceeeeecCCCCEEEEEecCCeEEEE
Confidence 3445555555777763 5788888888899999999876 5666 9999999996 589999999999
Q ss_pred eCC-CCeec-cccCCCccccccCeEEEEEeCCceEEEecCCeEEEE
Q 005559 114 NIH-AELIE-PNASMGKECFEENVVECVFWGNGVVCVTEANRYFCM 157 (691)
Q Consensus 114 ~~~-G~~~~-~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v 157 (691)
|.. |..++ +.+.- +..| ...+|+-+-+..-++.+-+..
T Consensus 90 Dve~~~~l~~~~~s~-----e~~i-s~~~w~~~~v~~e~n~~d~~~ 129 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSV-----ETDI-SKGIWDRIEVRVEENNRDFAC 129 (665)
T ss_pred EccCCCceecccccc-----ccch-heeecccceeeccccccchhh
Confidence 984 55444 12322 2334 447888777766666543333
No 291
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.57 E-value=0.54 Score=52.57 Aligned_cols=174 Identities=16% Similarity=0.163 Sum_probs=97.4
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCC-CeEEEEcCCCc---eeEEEEecCCCCCEEEEEecCCCeE--EEEEeCCeE
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESAL-RKLRIFNSAGV---LISETVWKNPGGRLIGMSWSEDQTL--ICVVQDGTV 110 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~-~~I~Iys~sG~---ll~si~~~~~~~~Iv~~~fs~de~L--v~v~~DGtV 110 (691)
.-+.+|+|..||.+.=. ... +.|.+++.+.. .+.++. +.-..-.|||||+. ++...||..
T Consensus 197 ~p~ws~~~~~~~y~~f~---------~~~~~~i~~~~l~~g~~~~i~~~~-----g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 197 TPAWSPDGKKLAYVSFE---------LGGCPRIYYLDLNTGKRPVILNFN-----GNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred ccccCcCCCceEEEEEe---------cCCCceEEEEeccCCccceeeccC-----CccCCccCCCCCCEEEEEECCCCCc
Confidence 34678888888877411 123 67878876433 333333 44455579999984 377888987
Q ss_pred EEE--eCCCCeeccccCCCccccccCeE-EEEEeCCceEEEecCC-----eEEEEecCCCceEEEcCCCCcCCCCceEEE
Q 005559 111 YRY--NIHAELIEPNASMGKECFEENVV-ECVFWGNGVVCVTEAN-----RYFCMADFATMKVCELARPEVEELPHCVAV 182 (691)
Q Consensus 111 ~ly--~~~G~~~~~sl~~~~~~~~~~V~-~~~~~~~G~vllt~~~-----~~~~v~n~~~~~~~~l~~~~l~~~~~~w~v 182 (691)
.+| |+.|+-.. .+... .++. .-.++++|-.++-.+. ++|.+ +.++....+++. .....+
T Consensus 263 ~iy~~dl~~~~~~-~Lt~~-----~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~-~~~g~~~~riT~----~~~~~~-- 329 (425)
T COG0823 263 DIYLMDLDGKNLP-RLTNG-----FGINTSPSWSPDGSKIVFTSDRGGRPQIYLY-DLEGSQVTRLTF----SGGGNS-- 329 (425)
T ss_pred cEEEEcCCCCcce-ecccC-----CccccCccCCCCCCEEEEEeCCCCCcceEEE-CCCCCceeEeec----cCCCCc--
Confidence 777 77766543 33332 2222 3345678854433222 25444 555554455542 112222
Q ss_pred ecCCcCCCCCeEEEEEeC-Ce--EEEEecCCc--c-ccc-CCCeeEEEECCCCCEEEEEeeCC
Q 005559 183 IEPKYTMTGSVEVLIGTD-AG--ILMLDEDGV--Q-KVD-DTLSQKMAVSPNGNFVACFTHDG 238 (691)
Q Consensus 183 i~~~~S~d~~~~vl~s~d-~t--i~l~d~~~~--~-~~~-~~~i~~Ia~SpnG~~IAl~t~dg 238 (691)
.|..||||..+++.+.. +. |...+..+. . .+. ......-+++|||+.+-..+..+
T Consensus 330 -~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 330 -NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred -CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 56889999999999864 22 333333211 1 111 12223457888888887776543
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=94.43 E-value=2.7 Score=43.24 Aligned_cols=134 Identities=10% Similarity=-0.009 Sum_probs=86.6
Q ss_pred eEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecC--Ce--EEEEecCCCceEE-EcCCCCcC
Q 005559 100 TLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEA--NR--YFCMADFATMKVC-ELARPEVE 174 (691)
Q Consensus 100 ~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~--~~--~~~v~n~~~~~~~-~l~~~~l~ 174 (691)
.+.+.+.|-|.++.++.|...++.+... +-.+..+.++++|-....-+ .+ +|.+.+-.+.... ..++
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~----~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~---- 201 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQ----NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP---- 201 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeecc----ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc----
Confidence 4678899999999999887665333222 23477889998876554422 33 4555554333333 2221
Q ss_pred CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----------cccCCCeeEEEECCCCCE-EEEEeeC-CeEEE
Q 005559 175 ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----------KVDDTLSQKMAVSPNGNF-VACFTHD-GRLVV 242 (691)
Q Consensus 175 ~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----------~~~~~~i~~Ia~SpnG~~-IAl~t~d-g~i~I 242 (691)
...+..++ +||......+.+..|+++-+||....- +.|.|.|....|||-|-. |.++++- +.+.|
T Consensus 202 t~D~gF~~---S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv 278 (344)
T KOG4532|consen 202 TSDHGFYN---SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHV 278 (344)
T ss_pred cCCCceee---eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEE
Confidence 22344554 577788888999999999999987332 357899999999997744 4444542 56666
Q ss_pred Ee
Q 005559 243 NN 244 (691)
Q Consensus 243 ~s 244 (691)
.+
T Consensus 279 ~D 280 (344)
T KOG4532|consen 279 VD 280 (344)
T ss_pred EE
Confidence 64
No 293
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.26 E-value=0.21 Score=57.25 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=91.4
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhhCChhhHHHHHhcChhhHHHHHHHHHh-cCHHHHHHHHHhcCChhHHHHHHHH--H
Q 005559 547 TALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARC-YKHEFLKDFFLSTGQLQEVAFLLWK--E 623 (691)
Q Consensus 547 ~AL~kA~~S~D~dLi~~vll~l~~~~~~~~f~~~l~~~~~a~~l~~~y~~~-~~~~~L~~~y~q~d~~~~~~~~~l~--~ 623 (691)
.-|..|+..+|.+.+..++.++++.+....|++.|...|.|...|..|.++ ++...+.+.+....+..+++..-.+ .
T Consensus 165 ~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA 244 (511)
T PF09787_consen 165 SLLDEALKREDGNAITAVVEFLKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKA 244 (511)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 356789999999999999999999999989999999999999999999975 6778888899998888888776666 2
Q ss_pred HHhcCCCCCCCCCCCCccchHHHHHH-HHh-hhhh------ccchhHHHHHHHHHHHHHHHHH
Q 005559 624 SWELGKNPMASNGSALHGPRIKRIEK-AHS-LFSE------TKEHTFESKAAEEHAKLLSVIQ 678 (691)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~L~~-a~~-~~~~------~~~~~f~~~~~~~~~~Ll~~Q~ 678 (691)
..-....+ .++..|+. +.. .+.. -..-..+...+.+++.+|+.|-
T Consensus 245 ~~iLq~kE----------klI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 245 QRILQSKE----------KLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred HHHhcCHH----------HHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHH
Confidence 22222222 45666776 332 2221 1112236777889999998887
No 294
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.18 E-value=2.9 Score=44.98 Aligned_cols=222 Identities=15% Similarity=0.174 Sum_probs=123.0
Q ss_pred CCCeEEEEcCCCceeEEE-------EecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCC-CCeecc---ccCCCccccc
Q 005559 64 ALRKLRIFNSAGVLISET-------VWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AELIEP---NASMGKECFE 132 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si-------~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~-G~~~~~---sl~~~~~~~~ 132 (691)
.+..+..+...-..+.+. .... +.|.++.-. ||.|++..++|.+.+|... |..-.. -+..+
T Consensus 77 ~~~~~~~~~~~E~~~~s~~~~~~~~~l~~--~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g----- 148 (412)
T KOG3881|consen 77 ADDDLPKFVIEEFEISSSLDDAKTVSLGT--KSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG----- 148 (412)
T ss_pred cCcccccccccCCcccccccccccccccc--ccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecC-----
Confidence 455555555443333333 2333 578888887 8999999999999999663 321110 11111
Q ss_pred cCeEEEEEeCC-ceEEEecC-C--eEEEEecCC-CceEEEcCCCC---cCCCCceEEEecCCcCCC--CCeEEEEEeCCe
Q 005559 133 ENVVECVFWGN-GVVCVTEA-N--RYFCMADFA-TMKVCELARPE---VEELPHCVAVIEPKYTMT--GSVEVLIGTDAG 202 (691)
Q Consensus 133 ~~V~~~~~~~~-G~vllt~~-~--~~~~v~n~~-~~~~~~l~~~~---l~~~~~~w~vi~~~~S~d--~~~~vl~s~d~t 202 (691)
.++..++-.+. --+++++. . +...+|+.+ +.+.|.=++++ ++-....|.- .-.|.+. ....+.+..-+.
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t-di~Fl~g~~~~~fat~T~~hq 227 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT-DIRFLEGSPNYKFATITRYHQ 227 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec-cceecCCCCCceEEEEeccee
Confidence 23445444442 22233333 3 355667665 34455444443 2112455631 1135444 678888888898
Q ss_pred EEEEecCCcc------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEE
Q 005559 203 ILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLY 276 (691)
Q Consensus 203 i~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~ 276 (691)
+.++|..-.. .....|++.+..-|.|++|-+++..|.+. .||.... .+-=||
T Consensus 228 vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~-----------~FD~r~~----kl~g~~------- 285 (412)
T KOG3881|consen 228 VRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA-----------KFDLRGG----KLLGCG------- 285 (412)
T ss_pred EEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhh-----------eecccCc----eeeccc-------
Confidence 9999887332 23456778888888888776666655554 3443210 000011
Q ss_pred EcCeEEEEcCCCC--ceEeecCCCeEEeecCCc-eEEEecCcceeeecc
Q 005559 277 WNDMLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRV 322 (691)
Q Consensus 277 ~~~~l~liGp~~~--~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~V 322 (691)
+-|-.|. +|.--...+++++..+|= |||+..+.-.+|++|
T Consensus 286 ------~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 286 ------LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred ------cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 1112221 233333456777777887 999988877777665
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=94.15 E-value=7.3 Score=40.49 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=54.9
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC---CceeEEEEecCC-CCCEEEEEecCCCeE-EEEEeCCeE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA---GVLISETVWKNP-GGRLIGMSWSEDQTL-ICVVQDGTV 110 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s---G~ll~si~~~~~-~~~Iv~~~fs~de~L-v~v~~DGtV 110 (691)
+.+|.|++|..+|+.- +..|.|=++. +..+.+..-.+. ...=..+.||||+.| +...+.|+|
T Consensus 1 W~~~~~~~Gk~lAi~q-------------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i 67 (282)
T PF15492_consen 1 WHLALSSDGKLLAILQ-------------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTI 67 (282)
T ss_pred CceeecCCCcEEEEEe-------------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeE
Confidence 3578999999999995 5677777753 345555554331 135778899999996 689999999
Q ss_pred EEEeCCCCeec
Q 005559 111 YRYNIHAELIE 121 (691)
Q Consensus 111 ~ly~~~G~~~~ 121 (691)
++||+.|..+-
T Consensus 68 ~vfdl~g~~lf 78 (282)
T PF15492_consen 68 RVFDLMGSELF 78 (282)
T ss_pred EEEecccceeE
Confidence 99999997654
No 296
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.06 E-value=2.2 Score=49.72 Aligned_cols=107 Identities=11% Similarity=0.132 Sum_probs=63.1
Q ss_pred EecCCcCCCCCeEEEEEeC------------CeEEEEecCCcc--cccCCCeeEEEECCCCCEEEEEeeCCeEEE---Ee
Q 005559 182 VIEPKYTMTGSVEVLIGTD------------AGILMLDEDGVQ--KVDDTLSQKMAVSPNGNFVACFTHDGRLVV---NN 244 (691)
Q Consensus 182 vi~~~~S~d~~~~vl~s~d------------~ti~l~d~~~~~--~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I---~s 244 (691)
.-.|.||+||+.+.+++.+ +.+++...++.. ....++|..+.+||||+.||+.. +|+++| ..
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr 477 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQ 477 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEe
Confidence 3446677887766555433 234444444322 11256799999999999999987 588887 44
Q ss_pred cCCCC-ce---eeccCCCCCCCCeEEEecCceEEEEEcC---eEEEEcCCCC
Q 005559 245 TNFSS-PV---IDESCESALPPEQIAWCGMDSVLLYWND---MLVMVAPQAE 289 (691)
Q Consensus 245 sd~~~-~l---~e~d~~~~~~p~q~~WCG~davvl~~~~---~l~liGp~~~ 289 (691)
.+-+. .+ .+.-......+.++.|-+++++++.-++ .+..+..+|.
T Consensus 478 ~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 478 TEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred CCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCc
Confidence 33232 12 1222222224688999999998765432 3444444443
No 297
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.97 E-value=0.15 Score=38.41 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=29.6
Q ss_pred CCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCC
Q 005559 216 DTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSS 249 (691)
Q Consensus 216 ~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~ 249 (691)
..+|..+++||+..+||+++.+|.|+|...+.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 4568999999999999999999999999876443
No 298
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.89 E-value=1.1 Score=53.76 Aligned_cols=111 Identities=15% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEec-CCCCCEEEEEecCCCeEE-EEEeCCe
Q 005559 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWK-NPGGRLIGMSWSEDQTLI-CVVQDGT 109 (691)
Q Consensus 32 ~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~-~~~~~Iv~~~fs~de~Lv-~v~~DGt 109 (691)
|-.-..++.+--++|||+.. ..+-+-.++-.|++=+ +-|+ .-.++|.+++|+.||.++ .+..+|.
T Consensus 87 ~~~~~v~s~a~~~~~ivi~T------------s~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~ 153 (1206)
T KOG2079|consen 87 DIAAGVISSAIVVVPIVIGT------------SHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQDGSLLLAGLGDGH 153 (1206)
T ss_pred CCCcceeeeeeeeeeEEEEc------------Cchhhhhhhhhcccch-hhcCCccCCcceeeEecCCCceeccccCCCc
Confidence 33445666666777887775 3455666666666332 3332 223689999999999975 6999999
Q ss_pred EEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecC--CeEEEE
Q 005559 110 VYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA--NRYFCM 157 (691)
Q Consensus 110 V~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~--~~~~~v 157 (691)
|.+||.+ ++..+-...+++. ..+|+.+.-.+.+-+++|++ |.||..
T Consensus 154 V~v~D~~~~k~l~~i~e~~ap--~t~vi~v~~t~~nS~llt~D~~Gsf~~l 202 (1206)
T KOG2079|consen 154 VTVWDMHRAKILKVITEHGAP--VTGVIFVGRTSQNSKLLTSDTGGSFWKL 202 (1206)
T ss_pred EEEEEccCCcceeeeeecCCc--cceEEEEEEeCCCcEEEEccCCCceEEE
Confidence 9999996 4555422222222 45666654444444566655 335543
No 299
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.77 E-value=1.4 Score=39.49 Aligned_cols=95 Identities=16% Similarity=0.288 Sum_probs=67.4
Q ss_pred ceEEEecCCcCCCCCeEEEEEe-CCeEEEEecCCcc--cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeec
Q 005559 178 HCVAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ--KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDE 254 (691)
Q Consensus 178 ~~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~~~~--~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~ 254 (691)
+++++. +|.-+|+.+++++. |..|.+++.++.. ....+.++.++-.+.+ ..|.+.++|||-++.. .+.+...
T Consensus 3 ~al~~~--d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~~-~F~Y~l~NGTVGvY~~--~~RlWRi 77 (111)
T PF14783_consen 3 TALCLF--DFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGGG-RFAYALANGTVGVYDR--SQRLWRI 77 (111)
T ss_pred eEEEEE--ecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCCC-EEEEEecCCEEEEEeC--cceeeee
Confidence 345554 46677877777766 7799999999776 3456678888888886 4677778999999854 2333344
Q ss_pred cCCCCCCCCeEEEecCc-----eEEEEEcC
Q 005559 255 SCESALPPEQIAWCGMD-----SVLLYWND 279 (691)
Q Consensus 255 d~~~~~~p~q~~WCG~d-----avvl~~~~ 279 (691)
+ ++..|..|.+|.-+ -+++-|.+
T Consensus 78 K--SK~~~~~~~~~D~~gdG~~eLI~Gwsn 105 (111)
T PF14783_consen 78 K--SKNQVTSMAFYDINGDGVPELIVGWSN 105 (111)
T ss_pred c--cCCCeEEEEEEcCCCCCceEEEEEecC
Confidence 4 45579999998544 58888876
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.54 E-value=0.25 Score=59.66 Aligned_cols=144 Identities=13% Similarity=0.182 Sum_probs=92.9
Q ss_pred ecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCce---eecc
Q 005559 183 IEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPV---IDES 255 (691)
Q Consensus 183 i~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l---~e~d 255 (691)
+..+|-.++..++++...|.|.+.|..... +.-.+.|..+++|||++.+|+.|..+++.+.+++|.-.. ++-|
T Consensus 72 ~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d 151 (1265)
T KOG1920|consen 72 VSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDAD 151 (1265)
T ss_pred EEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccc
Confidence 333566677788888888888888776554 446678999999999999999999999999999876332 2333
Q ss_pred CCCCCCCCeEEEec-------CceEEEEEcCe--EEEEc---C-C-CCceEeecCCCeEEe----ecCC--ceEEEecCc
Q 005559 256 CESALPPEQIAWCG-------MDSVLLYWNDM--LVMVA---P-Q-AEPVQYFYDEPLVLI----PECD--GVRILSNSS 315 (691)
Q Consensus 256 ~~~~~~p~q~~WCG-------~davvl~~~~~--l~liG---p-~-~~~v~f~~d~~~~l~----~E~D--GvRIit~~~ 315 (691)
....+.+..+.|=- +.+=....+-. -+..| - + ..+|+|--|+..+.+ ++.| -+|||+++
T Consensus 152 ~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE- 230 (1265)
T KOG1920|consen 152 DERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE- 230 (1265)
T ss_pred cccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-
Confidence 34456777888852 22222222211 12222 1 1 126788777766644 3445 29999998
Q ss_pred ceeeeccchhhhh
Q 005559 316 MEFLQRVPASTEQ 328 (691)
Q Consensus 316 ~efL~~Vp~~~~~ 328 (691)
.-|+.+.+....
T Consensus 231 -g~Lns~se~~~~ 242 (1265)
T KOG1920|consen 231 -GALNSTSEPVEG 242 (1265)
T ss_pred -chhhcccCcccc
Confidence 556655555443
No 301
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=92.69 E-value=2.9 Score=43.53 Aligned_cols=158 Identities=11% Similarity=-0.002 Sum_probs=93.4
Q ss_pred CCCeEEEEcCCCcee----EEEEecCCCC-CEEEEEecCCCe-EEEEEeCCeEEEEeC-CCCeec-cccCCCccccccCe
Q 005559 64 ALRKLRIFNSAGVLI----SETVWKNPGG-RLIGMSWSEDQT-LICVVQDGTVYRYNI-HAELIE-PNASMGKECFEENV 135 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll----~si~~~~~~~-~Iv~~~fs~de~-Lv~v~~DGtV~ly~~-~G~~~~-~sl~~~~~~~~~~V 135 (691)
..+.|.+|..++..- .-+....... .-.++.|++.+. +++-.++|.+..-+. .+.+.+ .+...| +.+.
T Consensus 93 a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H----e~E~ 168 (339)
T KOG0280|consen 93 ARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVH----EFEA 168 (339)
T ss_pred ccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccc----ceee
Confidence 577888888776421 1111111101 246788998765 678888999884433 333321 144555 5778
Q ss_pred EEEEEeC-CceEEEecCC-eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcC-CCCCeEEEEEeCCeEEEEecCCcc
Q 005559 136 VECVFWG-NGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYT-MTGSVEVLIGTDAGILMLDEDGVQ 212 (691)
Q Consensus 136 ~~~~~~~-~G~vllt~~~-~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S-~d~~~~vl~s~d~ti~l~d~~~~~ 212 (691)
+.|+|.. +--++.|++. .-..-|++.-|..+.+.+ ...+..-|.+-.-| |.+..+++.++|.+|.+||....-
T Consensus 169 Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n----~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 169 WTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN----SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred eeeecccCCCceEEecCCCceEEEEEecCCcceeeec----ceeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 9999974 3355566553 344455655454444433 12333333322223 345678889999999999988543
Q ss_pred -----cccCCCeeEEEECCCCC
Q 005559 213 -----KVDDTLSQKMAVSPNGN 229 (691)
Q Consensus 213 -----~~~~~~i~~Ia~SpnG~ 229 (691)
..-.|.|++|.-+|--.
T Consensus 245 kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 245 KPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred CccccCccccceEEEEecchhh
Confidence 22447899999999754
No 302
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=92.48 E-value=20 Score=39.51 Aligned_cols=98 Identities=11% Similarity=0.092 Sum_probs=57.7
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEE------EEec---CCCeEEEEEeCCeEEEEeC-CCCeec-cccCCCcccc
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIG------MSWS---EDQTLICVVQDGTVYRYNI-HAELIE-PNASMGKECF 131 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~------~~fs---~de~Lv~v~~DGtV~ly~~-~G~~~~-~sl~~~~~~~ 131 (691)
.++.+.-++. +|+.+++...... ..+.. +.-+ .++.+++...+|.+.-+|. .|+..= +.++.
T Consensus 77 ~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----- 150 (394)
T PRK11138 77 RAGLVKALDADTGKEIWSVDLSEK-DGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG----- 150 (394)
T ss_pred CCCeEEEEECCCCcEeeEEcCCCc-ccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC-----
Confidence 4567888885 7999988776431 01111 0111 2567778888999999987 588643 22221
Q ss_pred ccCeEEEEEeCCceEE-EecCCeEEEEecCCCceEEEcC
Q 005559 132 EENVVECVFWGNGVVC-VTEANRYFCMADFATMKVCELA 169 (691)
Q Consensus 132 ~~~V~~~~~~~~G~vl-lt~~~~~~~v~n~~~~~~~~l~ 169 (691)
.+...-+-.+|.++ .+.++.++.++--++...|+..
T Consensus 151 --~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 151 --EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred --ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 12221112245544 4455778888766677788775
No 303
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=92.40 E-value=7.9 Score=45.30 Aligned_cols=212 Identities=10% Similarity=0.097 Sum_probs=113.8
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeC------CeEE----EEeCC-CCeeccccCCCccc
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQD------GTVY----RYNIH-AELIEPNASMGKEC 130 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~D------GtV~----ly~~~-G~~~~~sl~~~~~~ 130 (691)
+..++|.+++- +|.+-.++.-|. +-|.++.|.-+..||+.+.+ |-|+ +-++. |--. -|...++.
T Consensus 444 T~sGTV~vvdvst~~v~~~fsvht--~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk--~fR~l~~~ 519 (1062)
T KOG1912|consen 444 TNSGTVDVVDVSTNAVAASFSVHT--SLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK--RFRGLQKP 519 (1062)
T ss_pred cCCceEEEEEecchhhhhhhcccc--cceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc--ccccCCCC
Confidence 36899999996 566777788888 88999999988888865432 2221 22332 3211 23322333
Q ss_pred cccCeEEEEEeCCceEEEec-CCeEEEEecCCC-----------c----eEEEcCCCC-cC--C---------------C
Q 005559 131 FEENVVECVFWGNGVVCVTE-ANRYFCMADFAT-----------M----KVCELARPE-VE--E---------------L 176 (691)
Q Consensus 131 ~~~~V~~~~~~~~G~vllt~-~~~~~~v~n~~~-----------~----~~~~l~~~~-l~--~---------------~ 176 (691)
.+..|..++++..|..++-. ...=..+|+..+ | .-|.++..+ +. + .
T Consensus 520 despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds 599 (1062)
T KOG1912|consen 520 DESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDS 599 (1062)
T ss_pred CcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeecc
Confidence 46778888888877554432 111122333311 1 111111110 00 0 0
Q ss_pred CceEEEec-------CCcCC-----------------CCCeEEEEEeCCeEEEEecCCcc-c----ccCCCeeEEEEC--
Q 005559 177 PHCVAVIE-------PKYTM-----------------TGSVEVLIGTDAGILMLDEDGVQ-K----VDDTLSQKMAVS-- 225 (691)
Q Consensus 177 ~~~w~vi~-------~~~S~-----------------d~~~~vl~s~d~ti~l~d~~~~~-~----~~~~~i~~Ia~S-- 225 (691)
...|.+.- .+-+. .+...|+.+.+|.+..||..+.+ + ......+.+.++
T Consensus 600 ~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~~l~~~~i 679 (1062)
T KOG1912|consen 600 VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWKDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAHSLTFPQI 679 (1062)
T ss_pred ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhccCCeeEeecccCceeEEecccccccCccCCCCchhhheecccC
Confidence 01111100 00000 24566777888899999977665 1 112223333333
Q ss_pred C-CCCEEEEEeeCCeEEEEecCCCCceeecc-CCCCCCCCeEEEecCceEEEEEcCe
Q 005559 226 P-NGNFVACFTHDGRLVVNNTNFSSPVIDES-CESALPPEQIAWCGMDSVLLYWNDM 280 (691)
Q Consensus 226 p-nG~~IAl~t~dg~i~I~ssd~~~~l~e~d-~~~~~~p~q~~WCG~davvl~~~~~ 280 (691)
| +|+.+++.++ -+-+|++.+.+...-.. .++.....++.||+.+++++.-++.
T Consensus 680 pG~~~~lvl~~d--~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~~d~~ 734 (1062)
T KOG1912|consen 680 PGDHTTLVLELD--WLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLPNDNK 734 (1062)
T ss_pred CCCceEEEEecC--cceecccccceeeeeeccCCcceEEEEEEecccCceecCCCCc
Confidence 3 5667777653 34566776666554442 2333455689999999999865543
No 304
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=92.39 E-value=1.1 Score=53.33 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=74.4
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeC
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI 115 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~ 115 (691)
+..+++.-.|.||+.+ .++.||+|+.-|+. +.......+.+|+++.-|.||+.|+++-+--+.+++.
T Consensus 580 Fs~~aTt~~G~iavgs------------~~G~IRLyd~~g~~-AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 580 FSCFATTEDGYIAVGS------------NKGDIRLYDRLGKR-AKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred ceEEEecCCceEEEEe------------CCCcEEeecccchh-hhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 3456677788999986 68999999998865 3333334447999999999999999888888888864
Q ss_pred ---CCC------eeccccCCCccc--------------c----ccCe--EEEEEe-CCc---eEEEecCCeEEEEecCC
Q 005559 116 ---HAE------LIEPNASMGKEC--------------F----EENV--VECVFW-GNG---VVCVTEANRYFCMADFA 161 (691)
Q Consensus 116 ---~G~------~~~~sl~~~~~~--------------~----~~~V--~~~~~~-~~G---~vllt~~~~~~~v~n~~ 161 (691)
.|+ |.. +++....+ . ...| ..|+|. +.| ..|+|+.|.++.+||+.
T Consensus 647 ~~~~g~~~g~~GF~~-~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~ 724 (794)
T PF08553_consen 647 LIKDGKNSGKLGFEK-SFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFK 724 (794)
T ss_pred eeecCCccCcccccc-ccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHH
Confidence 232 111 22210000 0 1112 245554 222 57899999999999985
No 305
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.13 E-value=4.1 Score=48.58 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=49.0
Q ss_pred CCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEE---EcCCCc-----e-e--EEEEe-----c-CCCCCEE
Q 005559 29 KHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRI---FNSAGV-----L-I--SETVW-----K-NPGGRLI 91 (691)
Q Consensus 29 ~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~I---ys~sG~-----l-l--~si~~-----~-~~~~~Iv 91 (691)
+..+|+...|.++|.|..+|+++... + -.+.+ |..+|. . + .+++- . .....|.
T Consensus 81 ~~~~f~v~~i~~n~~g~~lal~G~~~-v---------~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~ 150 (717)
T PF10168_consen 81 NPPLFEVHQISLNPTGSLLALVGPRG-V---------VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIK 150 (717)
T ss_pred CCCceeEEEEEECCCCCEEEEEcCCc-E---------EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEE
Confidence 34578889999999999999997532 1 11222 222221 0 1 11111 0 1113677
Q ss_pred EEEecCC----CeEEEEEeCCeEEEEeCC
Q 005559 92 GMSWSED----QTLICVVQDGTVYRYNIH 116 (691)
Q Consensus 92 ~~~fs~d----e~Lv~v~~DGtV~ly~~~ 116 (691)
.+.|-|. .+|++.++|+++|+||+.
T Consensus 151 qv~WhP~s~~~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 151 QVRWHPWSESDSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEcCCCCCCCeEEEEecCCEEEEEecC
Confidence 7778764 569999999999999885
No 306
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.09 E-value=13 Score=42.14 Aligned_cols=113 Identities=10% Similarity=0.031 Sum_probs=78.8
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCC-CeEEEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEE
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED-QTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVF 140 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~d-e~Lv~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~ 140 (691)
..+.|.+|+- .|++-+++......++|..+-|..+ +.+-+++.|+.|-.|+++ ++... ....+ ...+....+
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~-~~~~~----~~~~~sl~i 152 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR-IWKEQ----KPLVSSLCI 152 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee-eeccC----CCccceEEE
Confidence 6788999995 5677777775544489999999876 678899999999999996 44444 33322 456788899
Q ss_pred eCCceEEEecCCeEEEEecCC-CceEEEcCCCCcCCCCceEEEec
Q 005559 141 WGNGVVCVTEANRYFCMADFA-TMKVCELARPEVEELPHCVAVIE 184 (691)
Q Consensus 141 ~~~G~vllt~~~~~~~v~n~~-~~~~~~l~~~~l~~~~~~w~vi~ 184 (691)
.++|..++++++.+ .+++.+ ......|+.++ +..++.+++.
T Consensus 153 s~D~~~l~~as~~i-k~~~~~~kevv~~ftgh~--s~v~t~~f~~ 194 (541)
T KOG4547|consen 153 SPDGKILLTASRQI-KVLDIETKEVVITFTGHG--SPVRTLSFTT 194 (541)
T ss_pred cCCCCEEEeccceE-EEEEccCceEEEEecCCC--cceEEEEEEE
Confidence 99999999988764 444555 34555666421 2245555543
No 307
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.90 E-value=4.4 Score=46.84 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=58.3
Q ss_pred cccccccccEEEecccccccCCCC-------cCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeE
Q 005559 7 AAEWQLVYNRYYRKPELYQMRWKH-------IDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLIS 79 (691)
Q Consensus 7 ~~~W~~l~~~~yr~~~~y~~~w~~-------~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~ 79 (691)
+.+|--|++++=-+...++-+|.. +.-.++.||+...+|.|++.-. +. ..++...+.+.--+-
T Consensus 53 S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql-------~~-~~p~~~~~~t~~d~~-- 122 (726)
T KOG3621|consen 53 SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQL-------NK-ELPRDLDYVTPCDKS-- 122 (726)
T ss_pred ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehh-------hc-cCCCcceeecccccc--
Confidence 445555555444444445555611 2234567888888888888741 11 234544444432221
Q ss_pred EEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCC
Q 005559 80 ETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHA 117 (691)
Q Consensus 80 si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G 117 (691)
|+ .+|.++.||+|+. +.++...|+|.+-.++-
T Consensus 123 ----~~--~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 123 ----HK--CRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ----CC--ceEEEEEecccccEEeecCCCceEEEEEech
Confidence 44 6899999999998 56888899988876653
No 308
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.88 E-value=1.9 Score=50.26 Aligned_cols=129 Identities=16% Similarity=0.227 Sum_probs=87.1
Q ss_pred CCCeEEEEEeCCeEEEEecCCcccccCCCeeEEEE---CCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEE
Q 005559 190 TGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAV---SPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIA 266 (691)
Q Consensus 190 d~~~~vl~s~d~ti~l~d~~~~~~~~~~~i~~Ia~---SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~ 266 (691)
.+...++...+|.|++.+.++.. -+.+.. --.|.++|+.+.||++.|.+-.-++..+.+|-+. +++.++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~------~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~r--piksia 119 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNP------KTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKR--PIKSIA 119 (846)
T ss_pred hcceeeeccccceEEEEecCCcc------cccccccccccCCceEEEecCCCcEEEeeccCCccceeEecCC--cceeEE
Confidence 57778888889999999888753 011111 5579999999999999888765555555565432 333333
Q ss_pred E-------------ecCce-EEEEEc----CeEEEEcCCC--CceEeecCCCeEEeecCCceEEEecCcceeeeccchhh
Q 005559 267 W-------------CGMDS-VLLYWN----DMLVMVAPQA--EPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPAST 326 (691)
Q Consensus 267 W-------------CG~da-vvl~~~----~~l~liGp~~--~~v~f~~d~~~~l~~E~DGvRIit~~~~efL~~Vp~~~ 326 (691)
. .|.++ +|++=. +.--++++.+ .-.+....+..++-+.-+|+||+....-.-|..||.+.
T Consensus 120 l~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 120 LHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred eccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCC
Confidence 3 36566 776522 1122244443 32333337889999999999999999999999988765
No 309
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.84 E-value=13 Score=38.44 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=73.9
Q ss_pred CeEEEEEeCCce--EEEe--cCCe-EEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEe-
Q 005559 134 NVVECVFWGNGV--VCVT--EANR-YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLD- 207 (691)
Q Consensus 134 ~V~~~~~~~~G~--vllt--~~~~-~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d- 207 (691)
.+..+.++++|- ++++ .+.. ++.. ...+.....+.. -.+..|.|++++...+....+....++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~-~~~~~~~~~~~g---------~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVG-PAGGPVRPVLTG---------GSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEE-cCCCcceeeccC---------CccccccccCCCCEEEEEcCCCceEEEEe
Confidence 577888888774 3444 2233 3333 322222111111 1455667777766666555544444442
Q ss_pred -cCCcc------cccC-CCeeEEEECCCCCEEEEEee---CCeEEEEe--cC-CC--Cce---eeccCCCCCCCCeEEEe
Q 005559 208 -EDGVQ------KVDD-TLSQKMAVSPNGNFVACFTH---DGRLVVNN--TN-FS--SPV---IDESCESALPPEQIAWC 268 (691)
Q Consensus 208 -~~~~~------~~~~-~~i~~Ia~SpnG~~IAl~t~---dg~i~I~s--sd-~~--~~l---~e~d~~~~~~p~q~~WC 268 (691)
.++.. .... ++|+.+.+||||..+|+... .+.++|.. .+ -+ ..+ .+.-......+.++.|+
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 22222 1122 28999999999999999984 46787652 12 12 111 12111123356799999
Q ss_pred cCceEEEEE
Q 005559 269 GMDSVLLYW 277 (691)
Q Consensus 269 G~davvl~~ 277 (691)
+++++++.=
T Consensus 175 ~~~~L~V~~ 183 (253)
T PF10647_consen 175 DDSTLVVLG 183 (253)
T ss_pred CCCEEEEEe
Confidence 999887654
No 310
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.68 E-value=0.42 Score=35.99 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=28.1
Q ss_pred CCEEEEEecCCCeE-EEEEeCCeEEEEeCCCCe
Q 005559 88 GRLIGMSWSEDQTL-ICVVQDGTVYRYNIHAEL 119 (691)
Q Consensus 88 ~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~G~~ 119 (691)
.+|..+.|+|..+| ++++.||.|.+|.++|+.
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 57999999999887 589999999999998764
No 311
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.55 E-value=23 Score=39.50 Aligned_cols=204 Identities=16% Similarity=0.271 Sum_probs=110.0
Q ss_pred EEEecccccccCCCCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEE-EecCCCCCEEEEE
Q 005559 16 RYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISET-VWKNPGGRLIGMS 94 (691)
Q Consensus 16 ~~yr~~~~y~~~w~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si-~~~~~~~~Iv~~~ 94 (691)
..|+...+|+-.. ...-+...+.|+||.- .|| .+ .-++.|+.+.||+.++...... +.--.||++.
T Consensus 115 ~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~--~~~---~I--cVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~--- 181 (418)
T PF14727_consen 115 NQYQLELIYEHSL---QRTAYNMCCGPFGGVK--GRD---FI--CVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLC--- 181 (418)
T ss_pred cEEEEEEEEEEec---ccceeEEEEEECCCCC--Cce---EE--EEEecCceEEEEeCCcEEEEEEcCCCCCCcCeE---
Confidence 3466666665332 2344566788888833 121 01 1124799999999888775443 2222235655
Q ss_pred ecCC-CeEEEEEeCCeEEEEeCC---------------------CCeec--cccCCCccccccCeEEEEE---e-CCceE
Q 005559 95 WSED-QTLICVVQDGTVYRYNIH---------------------AELIE--PNASMGKECFEENVVECVF---W-GNGVV 146 (691)
Q Consensus 95 fs~d-e~Lv~v~~DGtV~ly~~~---------------------G~~~~--~sl~~~~~~~~~~V~~~~~---~-~~G~v 146 (691)
|.+. +.+|+++++.++.-|..+ |+.+. -++..+ +.+.++.+ . ...-+
T Consensus 182 Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG-----E~~l~i~v~~~~~~~~~I 256 (418)
T PF14727_consen 182 YCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG-----EQALDIQVVRFSSSESDI 256 (418)
T ss_pred EeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECC-----ceeEEEEEEEcCCCCceE
Confidence 6665 557889999999999552 11110 011112 22334333 2 34556
Q ss_pred EEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecC--CcCCCCC-eEEEEEeCCeEEEEecCCcc---cccCCCee
Q 005559 147 CVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEP--KYTMTGS-VEVLIGTDAGILMLDEDGVQ---KVDDTLSQ 220 (691)
Q Consensus 147 llt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~--~~S~d~~-~~vl~s~d~ti~l~d~~~~~---~~~~~~i~ 220 (691)
++.+..+++.+++- + .++-... +.-.|.|.+.-.. ...++.. ..++++.++++.++...... .....||
T Consensus 257 vvLger~Lf~l~~~-G-~l~~~kr--Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~~PV- 331 (418)
T PF14727_consen 257 VVLGERSLFCLKDN-G-SLRFQKR--LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPHVPV- 331 (418)
T ss_pred EEEecceEEEEcCC-C-eEEEEEe--cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCCCCE-
Confidence 66667778888662 3 2222211 1133667664332 2222222 35556667777766555333 3444554
Q ss_pred EEEECC----CCCEEEEEeeCCeEEEE
Q 005559 221 KMAVSP----NGNFVACFTHDGRLVVN 243 (691)
Q Consensus 221 ~Ia~Sp----nG~~IAl~t~dg~i~I~ 243 (691)
.|.+.. +| .|++.+.+|++.+.
T Consensus 332 al~v~~~~~~~G-~IV~Ls~~G~L~v~ 357 (418)
T PF14727_consen 332 ALSVANFNGLKG-LIVSLSDEGQLSVS 357 (418)
T ss_pred EEEecccCCCCc-eEEEEcCCCcEEEE
Confidence 454443 55 78888888888765
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.92 Score=49.54 Aligned_cols=129 Identities=12% Similarity=0.141 Sum_probs=79.6
Q ss_pred cCCCCCeEEEEEeCCeEEEEecCCcc--------------------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 187 YTMTGSVEVLIGTDAGILMLDEDGVQ--------------------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 187 ~S~d~~~~vl~s~d~ti~l~d~~~~~--------------------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
+++.+...+.++..|-|--|+.++.. .-..+....+.|||+|+.++.++.|-+|++....
T Consensus 152 y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 152 YNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred eeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec
Confidence 34456666777777888889888511 0122446789999999999999999999988766
Q ss_pred CCCceeecc---CCCCCC---CC---eEEEecCceEEEEEcCeEEEEcC-CCCceEeecCCCeEEeecCCceEEEecCcc
Q 005559 247 FSSPVIDES---CESALP---PE---QIAWCGMDSVLLYWNDMLVMVAP-QAEPVQYFYDEPLVLIPECDGVRILSNSSM 316 (691)
Q Consensus 247 ~~~~l~e~d---~~~~~~---p~---q~~WCG~davvl~~~~~l~liGp-~~~~v~f~~d~~~~l~~E~DGvRIit~~~~ 316 (691)
-++...|+| ++.... |. .|.|--.=|| +.++-=.|. -+..+-|.-.+...|.+-+=|||||+-+..
T Consensus 232 tGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmav----erelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn 307 (558)
T KOG0882|consen 232 TGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAV----ERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTN 307 (558)
T ss_pred cchhhhhhhccchhhhhccccccccceeehhhhhhH----HhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecC
Confidence 566666665 222222 22 3333221111 111111111 122566666678889999999999987765
Q ss_pred eee
Q 005559 317 EFL 319 (691)
Q Consensus 317 efL 319 (691)
.-.
T Consensus 308 ~v~ 310 (558)
T KOG0882|consen 308 TVV 310 (558)
T ss_pred eEE
Confidence 443
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=91.24 E-value=3.9 Score=48.51 Aligned_cols=158 Identities=13% Similarity=0.140 Sum_probs=85.3
Q ss_pred CceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCCe-
Q 005559 75 GVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR- 153 (691)
Q Consensus 75 G~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~- 153 (691)
++......... +.+.=|.-+ +-.|.|+.+.|+|.+-|+..-...+++..| .+.|.+..+.+|=++-.--+.+
T Consensus 167 ~~e~r~~~v~a--~~v~imR~N-nr~lf~G~t~G~V~LrD~~s~~~iht~~aH----s~siSDfDv~GNlLitCG~S~R~ 239 (1118)
T KOG1275|consen 167 EKETRTTNVSA--SGVTIMRYN-NRNLFCGDTRGTVFLRDPNSFETIHTFDAH----SGSISDFDVQGNLLITCGYSMRR 239 (1118)
T ss_pred ceeeeeeeccC--CceEEEEec-CcEEEeecccceEEeecCCcCceeeeeecc----ccceeeeeccCCeEEEeeccccc
Confidence 33444444333 345555543 344679999999999999755455577766 5567776555554444444433
Q ss_pred -------EEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCc-------c-cccCCC
Q 005559 154 -------YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV-------Q-KVDDTL 218 (691)
Q Consensus 154 -------~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~-------~-~~~~~~ 218 (691)
|+.|+++...+ .|+.++....|.-.-.+| .+ -...+..+..|..-..|..+- . ....++
T Consensus 240 ~~l~~D~FvkVYDLRmmr--al~PI~~~~~P~flrf~P-sl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s 313 (1118)
T KOG1275|consen 240 YNLAMDPFVKVYDLRMMR--ALSPIQFPYGPQFLRFHP-SL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS 313 (1118)
T ss_pred ccccccchhhhhhhhhhh--ccCCcccccCchhhhhcc-cc---cceEEEEecccceeeccccccCCCccceeEEccCCC
Confidence 55566643221 122111101121111111 11 122333333343444442211 1 122334
Q ss_pred -eeEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 219 -SQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 219 -i~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
+.++.+|+||+.+|++..+|.|.+|..
T Consensus 314 ~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 314 GISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cceeEEecCCCceEEEecccCcEeeecC
Confidence 889999999999999999999999973
No 314
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.83 E-value=11 Score=41.41 Aligned_cols=144 Identities=15% Similarity=0.091 Sum_probs=76.9
Q ss_pred CCEEEEEecCCCeEEEEEe------------CC-eEEEE-eC--CCCeec-cccCCCccccccCeEEEEEeCCceEEEec
Q 005559 88 GRLIGMSWSEDQTLICVVQ------------DG-TVYRY-NI--HAELIE-PNASMGKECFEENVVECVFWGNGVVCVTE 150 (691)
Q Consensus 88 ~~Iv~~~fs~de~Lv~v~~------------DG-tV~ly-~~--~G~~~~-~sl~~~~~~~~~~V~~~~~~~~G~vllt~ 150 (691)
...+.|.|.++|.|.++.. .| .|.++ |. +|+..+ +.+-.+ -.....+.++++| ++++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~----l~~p~Gi~~~~~G-lyV~~ 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE----LSMVTGLAVAVGG-VYVAT 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC----CCCccceeEecCC-EEEeC
Confidence 4688889999999876642 23 56666 33 465432 122211 1223556778899 77777
Q ss_pred CCeEEEEecCCCc-----eEEEc-CCCCcCCC-CceEEEecCCcCCCCCeEEEEEe-------------------CCeEE
Q 005559 151 ANRYFCMADFATM-----KVCEL-ARPEVEEL-PHCVAVIEPKYTMTGSVEVLIGT-------------------DAGIL 204 (691)
Q Consensus 151 ~~~~~~v~n~~~~-----~~~~l-~~~~l~~~-~~~w~vi~~~~S~d~~~~vl~s~-------------------d~ti~ 204 (691)
..+++.+.+.++. ....+ ...+.... +++ ..-...+.+||.+.+..+. .+.|+
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~-~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHH-SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc-cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence 7788878654321 12222 22111100 111 1111134567766665542 25688
Q ss_pred EEecCCcc--cccC--CCeeEEEECCCCCEEEEEeeC
Q 005559 205 MLDEDGVQ--KVDD--TLSQKMAVSPNGNFVACFTHD 237 (691)
Q Consensus 205 l~d~~~~~--~~~~--~~i~~Ia~SpnG~~IAl~t~d 237 (691)
.++.++.. .... ..-..++|+|+|++..+=+.+
T Consensus 168 r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 168 RYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence 88887654 1111 223478999999886554433
No 315
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=4.7 Score=47.01 Aligned_cols=164 Identities=15% Similarity=0.133 Sum_probs=118.5
Q ss_pred hhhchhhcCCChHHHHHHHhHhhhhhccCCCCCccccCHHHHhcCChHHHHHHHHHcCCHHHHHHHHHHhCCChhHHHHH
Q 005559 394 SYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMH 473 (691)
Q Consensus 394 sfGk~~~~~~~~~~fv~~c~~LRVLN~lr~~~igi~lT~~Q~~~l~~~~li~rL~~r~~~~lA~~I~~~l~~~~~~Vl~h 473 (691)
.|.|+-.-+|......+..|.|+.=..|-.. .| - +|..|+....|.-|+.-|+-..|.+|-.-+++|..+++ +
T Consensus 647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q-~~----~-~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~-w 719 (829)
T KOG2280|consen 647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQ-FG----G-SFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLW-W 719 (829)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-hc----c-ccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhH-H
Confidence 3444444455555555555555554444332 22 2 56788999999999999999999999999999977765 4
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCcCcccccccCCchHHHHHHHH
Q 005559 474 WACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKAT 553 (691)
Q Consensus 474 WA~~kI~~~~~~~D~~l~~~I~~kl~~~~~is~a~IA~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl~~~~~~~AL~kA~ 553 (691)
|=|.-..... +=++|.+.=.+| .+.|.|.--..+..+.|+..=|.+-+..=+...++|.+++.+|.+..|...|.
T Consensus 720 Lk~~aLa~~~--kweeLekfAksk---ksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 720 LKLTALADIK--KWEELEKFAKSK---KSPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHHHhhh--hHHHHHHHHhcc---CCCCCchhHHHHHHhcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHHHHH
Confidence 4333221111 225555544433 23577877788889999999999998888888899999999999999999999
Q ss_pred HcCCchHHHHHHHHHH
Q 005559 554 ESGDTDLVYLVIFHIW 569 (691)
Q Consensus 554 ~S~D~dLi~~vll~l~ 569 (691)
++.|-+-...++.+..
T Consensus 795 ~~rd~~~L~ev~~~~~ 810 (829)
T KOG2280|consen 795 EHRDGAELSEVLSKCT 810 (829)
T ss_pred HhcChHHHHHHHHhcC
Confidence 9999988777765543
No 316
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=90.68 E-value=14 Score=36.26 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=62.3
Q ss_pred CCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEe-cCCeEEEEecCCCceEEEcCCCCcCCC
Q 005559 98 DQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVT-EANRYFCMADFATMKVCELARPEVEEL 176 (691)
Q Consensus 98 de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt-~~~~~~~v~n~~~~~~~~l~~~~l~~~ 176 (691)
||.-++...||+.+.-.++|+.....|..+ .|-. ..++|.++-- ++.+.+.+.--++.....+++ +.
T Consensus 8 dG~~~i~f~NGt~K~v~~dg~~~~v~f~NG------DvK~--~~pDg~v~Y~ya~~~T~~tt~pdG~ev~~Fpn----gQ 75 (179)
T PF07202_consen 8 DGRRVITFPNGTKKEVSPDGKTVIVRFPNG------DVKQ--TLPDGRVIYYYADAQTTHTTYPDGLEVYEFPN----GQ 75 (179)
T ss_pred CCCEEEEECCCCEEEEcCCCCEEEEEEeCC------CEeE--EecCCcEEEEEeCCCEEEEEcCCCcEEEEeCC----Cc
Confidence 677777778888877777765543344322 2332 2455544333 333444444444444555543 11
Q ss_pred CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc--cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 177 ~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~--~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
. .. +-|||+.++.. .||+++.+..+|.. ....|-+ +.+.|||.....+ .+|.-.|-..+
T Consensus 76 ~---E~----h~pDG~keI~f-PDGt~k~~~~dG~e~~~fpDGT~--~~~~~nG~k~i~~-pnGq~ei~t~~ 136 (179)
T PF07202_consen 76 I---EK----HYPDGSKEIVF-PDGTIKYIHPDGREETVFPDGTI--VTIDPNGDKTITF-PNGQKEIHTAD 136 (179)
T ss_pred e---EE----EcCCCCEEEEe-CCCcEEEEeCCCcEEEECCCceE--EEEeCCCcEEEEe-CCCcEEEEccc
Confidence 1 11 11466665444 35556666666654 2233333 4555566555554 34544444333
No 317
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=90.66 E-value=6.4 Score=44.34 Aligned_cols=182 Identities=12% Similarity=0.248 Sum_probs=106.7
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEc-CCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeC
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI 115 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys-~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~ 115 (691)
-...||-+..||....+.+ .....+.+-. ++++.|.+-..+. -.=..|.|-.+|+.+|+--|..-+.= .
T Consensus 351 ~FswsP~~~llAYwtpe~~-------~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~-~ 420 (698)
T KOG2314|consen 351 DFSWSPTSNLLAYWTPETN-------NIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSK-V 420 (698)
T ss_pred CcccCCCcceEEEEccccc-------CCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeecccc-c
Confidence 3468899999999875543 2455666666 5888888877765 44567889999998888776644321 1
Q ss_pred CCCe---eccccCCC---cc--ccccCeEEEEEe-CCc--eEEEecCC-----eEEEEe-cCCCceEEEcCCCCcCCCCc
Q 005559 116 HAEL---IEPNASMG---KE--CFEENVVECVFW-GNG--VVCVTEAN-----RYFCMA-DFATMKVCELARPEVEELPH 178 (691)
Q Consensus 116 ~G~~---~~~sl~~~---~~--~~~~~V~~~~~~-~~G--~vllt~~~-----~~~~v~-n~~~~~~~~l~~~~l~~~~~ 178 (691)
.|.+ .-+.+... .+ .....|+... | |.| ++++.++. .||.+. +...+.+ +.. + ...+
T Consensus 421 ~g~f~n~eIfrireKdIpve~velke~vi~Fa-WEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l--Vk~--~-dk~~ 494 (698)
T KOG2314|consen 421 KGQFSNLEIFRIREKDIPVEVVELKESVIAFA-WEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL--VKE--L-DKKF 494 (698)
T ss_pred cceEeeEEEEEeeccCCCceeeecchheeeee-eccCCCeEEEEEccccccceeEEEeecCCCchhh--hhh--h-cccc
Confidence 2222 11111110 00 0011122211 5 444 56665442 377775 4322221 121 1 2256
Q ss_pred eEEEecCCcCCCCCeEEEEEe---CCeEEEEecC--Ccc---cccCCCeeEEEECCCCCEEEEEeeC
Q 005559 179 CVAVIEPKYTMTGSVEVLIGT---DAGILMLDED--GVQ---KVDDTLSQKMAVSPNGNFVACFTHD 237 (691)
Q Consensus 179 ~w~vi~~~~S~d~~~~vl~s~---d~ti~l~d~~--~~~---~~~~~~i~~Ia~SpnG~~IAl~t~d 237 (691)
|-.| .+||.|+..|.++- .+++..+|.+ ++. ....-..+.+.+-|.|+++.+.+..
T Consensus 495 ~N~v---fwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 495 ANTV---FWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred cceE---EEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 6666 58899998877654 6789999888 333 1222336789999999999887754
No 318
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=90.39 E-value=8.6 Score=41.06 Aligned_cols=168 Identities=14% Similarity=0.170 Sum_probs=90.2
Q ss_pred CeEEEEcC-CCceeEEEEecCCCCCEEEE---EecCC----CeEEEEEe----------C-CeEEEEeCCCC-----eec
Q 005559 66 RKLRIFNS-AGVLISETVWKNPGGRLIGM---SWSED----QTLICVVQ----------D-GTVYRYNIHAE-----LIE 121 (691)
Q Consensus 66 ~~I~Iys~-sG~ll~si~~~~~~~~Iv~~---~fs~d----e~Lv~v~~----------D-GtV~ly~~~G~-----~~~ 121 (691)
..|+|++. +.+.+.++..+.. ..+.++ .|..+ .++++|+. . |.+.+|++... .++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 35899997 6789999998762 345544 44432 35544332 2 99999987541 111
Q ss_pred cccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCCce-EEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeC
Q 005559 122 PNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD 200 (691)
Q Consensus 122 ~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~~~-~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d 200 (691)
..... + .++.|..+.-+ +|.+++..++.++ +.++.... +....... ......++. .-++.+++.+.-
T Consensus 81 ~i~~~--~-~~g~V~ai~~~-~~~lv~~~g~~l~-v~~l~~~~~l~~~~~~~--~~~~i~sl~-----~~~~~I~vgD~~ 148 (321)
T PF03178_consen 81 LIHST--E-VKGPVTAICSF-NGRLVVAVGNKLY-VYDLDNSKTLLKKAFYD--SPFYITSLS-----VFKNYILVGDAM 148 (321)
T ss_dssp EEEEE--E-ESS-EEEEEEE-TTEEEEEETTEEE-EEEEETTSSEEEEEEE---BSSSEEEEE-----EETTEEEEEESS
T ss_pred EEEEE--e-ecCcceEhhhh-CCEEEEeecCEEE-EEEccCcccchhhheec--ceEEEEEEe-----ccccEEEEEEcc
Confidence 01110 1 14567777777 5555555555433 33333233 33222110 112222321 135677777766
Q ss_pred CeEEEE--ecCCcc------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 201 AGILML--DEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 201 ~ti~l~--d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
+.+.++ +.++.. ......++++.+-+|++.++.+..+|.++++..+
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 655554 665443 1233447788888788888888888999988764
No 319
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.36 E-value=17 Score=42.54 Aligned_cols=192 Identities=16% Similarity=0.165 Sum_probs=98.0
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeC-CeEEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQD-GTVYRY 113 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~D-GtV~ly 113 (691)
...++||+|+.||....+.. ........|.+++..|.. ..+. .. .....-.|+||+. +.++... ..+++.
T Consensus 353 sspaiSpdG~~vA~v~~~~~----~~~d~~s~Lwv~~~gg~~-~~lt-~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGR----GAPDPASSLWVGPLGGVA-VQVL-EG--HSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccceECCCCCEEEEEEeecC----CCCCcceEEEEEeCCCcc-eeee-cC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence 46789999999999873210 011124466666665554 3332 11 3477778999966 4444332 223333
Q ss_pred eC--CCCeeccccCCCccc---cccCeEEEEEeCCceEE-EecCCeEEE---EecCCCceEEEcCCC-----CcCCCCce
Q 005559 114 NI--HAELIEPNASMGKEC---FEENVVECVFWGNGVVC-VTEANRYFC---MADFATMKVCELARP-----EVEELPHC 179 (691)
Q Consensus 114 ~~--~G~~~~~sl~~~~~~---~~~~V~~~~~~~~G~vl-lt~~~~~~~---v~n~~~~~~~~l~~~-----~l~~~~~~ 179 (691)
+- .|++.......+ +. ...+|.+.+++++|.-+ +...++++. +.+-.+. ..+.++ .+...+..
T Consensus 425 ~~~~~gql~~~~vd~g-e~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 425 RDPATGQLARTPVDAS-AVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTAVS 501 (591)
T ss_pred ccCCCceEEEEeccCc-hhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccCCcccc
Confidence 32 233321122111 11 13468999999999643 334567665 4433332 334332 11111122
Q ss_pred EEEecCCcCCCCCeEEEEEe-CCeEEEEecCCcc--c-cc---CCCeeEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 180 VAVIEPKYTMTGSVEVLIGT-DAGILMLDEDGVQ--K-VD---DTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 180 w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~~~~--~-~~---~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
. .|..++++.+.... +..++.++.+|.. . .. ..++..|+-+|+ . |-..+.+|.++.-++
T Consensus 502 l-----~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~-iyv~~~~g~~~l~~~ 567 (591)
T PRK13616 502 L-----DWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-T-VYVTDARAVLQLPNS 567 (591)
T ss_pred c-----eEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-e-EEEEcCCceEEecCC
Confidence 1 24456665433222 3468888888776 1 12 466778888874 2 223344565554433
No 320
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=90.34 E-value=2.7 Score=47.19 Aligned_cols=131 Identities=13% Similarity=0.148 Sum_probs=83.3
Q ss_pred EEEEeCCceEEEecCCeEEEEecCCC-ceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEe-----------CCeEE
Q 005559 137 ECVFWGNGVVCVTEANRYFCMADFAT-MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-----------DAGIL 204 (691)
Q Consensus 137 ~~~~~~~G~vllt~~~~~~~v~n~~~-~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~-----------d~ti~ 204 (691)
-++.+|-|--++|--.+=+.+|+-.+ .+..++.+ |..=.+ +|||....+|+.+. ++.+.
T Consensus 215 yv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~H------p~Vq~i---dfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYH------PGVQFI---DFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred eEEecCCceEEEEEeccceeeecCccHHHHHhccC------CCceee---ecCCccceEEEecCCccccCcccCCCceEE
Confidence 35667899888887665556666432 23444544 322223 68888888887765 24788
Q ss_pred EEecCCcc-----cc---cCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEE
Q 005559 205 MLDEDGVQ-----KV---DDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLY 276 (691)
Q Consensus 205 l~d~~~~~-----~~---~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~ 276 (691)
+||...-. .. ..-.+.-..+|.|+|++|..+.+ .|.|+.+- +=.+++-.+-..+..+++.||-.+.++.+
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtp-sf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETP-SFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecC-ceeeecccccCCccccCcccCCCcceEEE
Confidence 99977433 11 11224567999999999999974 66677543 21122222211345689999988999999
Q ss_pred Ec
Q 005559 277 WN 278 (691)
Q Consensus 277 ~~ 278 (691)
|-
T Consensus 364 wt 365 (698)
T KOG2314|consen 364 WT 365 (698)
T ss_pred Ec
Confidence 95
No 321
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=90.14 E-value=0.56 Score=30.76 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=26.4
Q ss_pred cCCCeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 215 DDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 215 ~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
+..++..+.++|+++++++.+.+|++++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456789999999999999999999998873
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.10 E-value=1.5 Score=51.27 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=47.7
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCC--CCeec
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH--AELIE 121 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~--G~~~~ 121 (691)
.-+.+++|...-+.-.+++-..+ ..|..+.||++|. |+++..-|.|.+|..+ |++..
T Consensus 79 e~g~~~v~~~~~~e~htv~~th~-a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~ 138 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTETHTVVETHP-APIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT 138 (1416)
T ss_pred ccceeEEEecCCceeeeeccCCC-CCceeEEecCCCCeEEEcCCCceeEEEEeeecccccc
Confidence 46789999998888888887653 6899999999987 7899999999999765 87643
No 323
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=89.92 E-value=0.67 Score=49.83 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=58.7
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC-ceeEEEEe-cCCCCCEEEEEecCCCeEEEEEeCCeEEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVW-KNPGGRLIGMSWSEDQTLICVVQDGTVYRY 113 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-~ll~si~~-~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly 113 (691)
.-||+||++..|-++ | .|..|+|=...+ .-|.++.. |. .-|-.|+-.++..|++.+.|+|+++|
T Consensus 155 ~dVavS~D~~~Iita-D-----------RDEkIRvs~ypa~f~IesfclGH~--eFVS~isl~~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 155 LDVAVSPDDQFIITA-D-----------RDEKIRVSRYPATFVIESFCLGHK--EFVSTISLTDNYLLLSGSGDKTLRLW 220 (390)
T ss_pred heeeecCCCCEEEEe-c-----------CCceEEEEecCcccchhhhccccH--hheeeeeeccCceeeecCCCCcEEEE
Confidence 478999999888665 3 578899888654 45666554 66 56999999988888999999999999
Q ss_pred eC-CCCeeccccC
Q 005559 114 NI-HAELIEPNAS 125 (691)
Q Consensus 114 ~~-~G~~~~~sl~ 125 (691)
|+ .|+.+. ++.
T Consensus 221 d~~sgk~L~-t~d 232 (390)
T KOG3914|consen 221 DITSGKLLD-TCD 232 (390)
T ss_pred ecccCCccc-ccc
Confidence 99 687764 443
No 324
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.15 E-value=30 Score=36.91 Aligned_cols=168 Identities=12% Similarity=0.143 Sum_probs=77.8
Q ss_pred CCeEEEEcCCCceeEEEE----ecC----CCCCEEEEEecCCCeEEEEEeCCeEE-EEeCCCC-eeccccCCCccccccC
Q 005559 65 LRKLRIFNSAGVLISETV----WKN----PGGRLIGMSWSEDQTLICVVQDGTVY-RYNIHAE-LIEPNASMGKECFEEN 134 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~si~----~~~----~~~~Iv~~~fs~de~Lv~v~~DGtV~-ly~~~G~-~~~~sl~~~~~~~~~~ 134 (691)
+..+.+.+..|....|.. |+. ..+.+..+.-++|+++|.|++.|.+. -|+.-.. ...+.... ...
T Consensus 114 ~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~-----~~r 188 (302)
T PF14870_consen 114 DGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNS-----SRR 188 (302)
T ss_dssp TTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--S-----SS-
T ss_pred CCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCc-----cce
Confidence 345555666666665532 221 12578888889999999999999765 4455433 23323322 356
Q ss_pred eEEEEEeCCceEEEecCC-eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-
Q 005559 135 VVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ- 212 (691)
Q Consensus 135 V~~~~~~~~G~vllt~~~-~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~- 212 (691)
|..+-|.++|-+.+...+ .++.-..-+....|.-+..+ .....|.++.+.|.+++..-+ ++-++++++-.-.|..
T Consensus 189 iq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~--~~~~~~~~ld~a~~~~~~~wa-~gg~G~l~~S~DgGktW 265 (302)
T PF14870_consen 189 IQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIP--IKTNGYGILDLAYRPPNEIWA-VGGSGTLLVSTDGGKTW 265 (302)
T ss_dssp EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-T--TSS--S-EEEEEESSSS-EEE-EESTT-EEEESSTTSS-
T ss_pred ehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCC--cccCceeeEEEEecCCCCEEE-EeCCccEEEeCCCCccc
Confidence 888888887766555554 44443323333333222111 113555566556766544333 4445555554444444
Q ss_pred ----c--ccCCCeeEEEECCCCCEEEEEeeCCeEE
Q 005559 213 ----K--VDDTLSQKMAVSPNGNFVACFTHDGRLV 241 (691)
Q Consensus 213 ----~--~~~~~i~~Ia~SpnG~~IAl~t~dg~i~ 241 (691)
. .-.+.+.+|.|.++.+-.|++ ++|.|.
T Consensus 266 ~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll 299 (302)
T PF14870_consen 266 QKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLL 299 (302)
T ss_dssp EE-GGGTTSSS---EEEEEETTEEEEE--STTEEE
T ss_pred eECccccCCCCceEEEEEcCCCceEEEC-CCcEEE
Confidence 1 224557888887665656665 467664
No 325
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=88.95 E-value=41 Score=37.06 Aligned_cols=175 Identities=14% Similarity=0.149 Sum_probs=100.1
Q ss_pred CCeEEEEcCCCc-eeEEEEecCCCCCEEEEEecCCCe-EEEEEe---CCeEEEEeCC-CCeeccccCCCccccccCeEEE
Q 005559 65 LRKLRIFNSAGV-LISETVWKNPGGRLIGMSWSEDQT-LICVVQ---DGTVYRYNIH-AELIEPNASMGKECFEENVVEC 138 (691)
Q Consensus 65 ~~~I~Iys~sG~-ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~---DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~ 138 (691)
.+.|.+.+.... .+.++.- . .....+.|+++++ +.+... ++++.+.|.. ++..+ +..-+ +.. ..+
T Consensus 95 ~~~v~vid~~~~~~~~~~~v-G--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~-~~~vG----~~P-~~~ 165 (381)
T COG3391 95 SNTVSVIDTATNTVLGSIPV-G--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA-TIPVG----NTP-TGV 165 (381)
T ss_pred CCeEEEEcCcccceeeEeee-c--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-EEecC----CCc-ceE
Confidence 677888884433 3333332 1 2578889999986 545444 6788888776 44455 34333 223 677
Q ss_pred EEeCCce-EEEec-CCeEEEEecCCCceEEEcCCCC--cC--CCCceEEEecCCcCCCCCeEEEEEe-C--CeEEEEecC
Q 005559 139 VFWGNGV-VCVTE-ANRYFCMADFATMKVCELARPE--VE--ELPHCVAVIEPKYTMTGSVEVLIGT-D--AGILMLDED 209 (691)
Q Consensus 139 ~~~~~G~-vllt~-~~~~~~v~n~~~~~~~~l~~~~--l~--~~~~~w~vi~~~~S~d~~~~vl~s~-d--~ti~l~d~~ 209 (691)
.+.++|. ++++. ..+.+.+-+......++ ..+. .. ..|..-. ++++|........ + +++..++..
T Consensus 166 a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~-----v~~~g~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 166 AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIA-----VDPDGNRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred EECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEE-----ECCCCCEEEEEeccCCCceEEEEeCC
Confidence 8888887 55554 23333333455444443 2211 11 1243333 4567874444433 3 488888877
Q ss_pred Ccc-ccc---CC--CeeEEEECCCCCEEEEEeeC-CeEEEEecCCCCceeec
Q 005559 210 GVQ-KVD---DT--LSQKMAVSPNGNFVACFTHD-GRLVVNNTNFSSPVIDE 254 (691)
Q Consensus 210 ~~~-~~~---~~--~i~~Ia~SpnG~~IAl~t~d-g~i~I~ssd~~~~l~e~ 254 (691)
... ... .+ .-..++++|+|+++-..... +++.+.+.........+
T Consensus 240 ~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 240 TGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred CceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 544 111 11 24568999999987777544 78888877655554433
No 326
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=88.77 E-value=42 Score=36.95 Aligned_cols=176 Identities=16% Similarity=0.092 Sum_probs=89.1
Q ss_pred CCCeEEEEcC-CCceeEEEEecCCCCCEEEEE-ecC---CCeEEEEEeCCeEEEEeC-CCCeec-cccCCCccccc-cC-
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNPGGRLIGMS-WSE---DQTLICVVQDGTVYRYNI-HAELIE-PNASMGKECFE-EN- 134 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~-fs~---de~Lv~v~~DGtV~ly~~-~G~~~~-~sl~~~~~~~~-~~- 134 (691)
.++.|.-++. +|+++++.....+ .+..-+ -+| ++.+++.+.+|.+..++. .|+..- +.+.......+ ..
T Consensus 168 ~~g~l~ald~~tG~~~W~~~~~~~--~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 168 SNGMLQALNESDGAVKWTVNLDVP--SLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred CCCEEEEEEccCCCEeeeecCCCC--cccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 4567777785 7888888775421 110000 112 456677788888877776 466431 11111100000 00
Q ss_pred --e-EEEEEeCCceEE-EecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCC
Q 005559 135 --V-VECVFWGNGVVC-VTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG 210 (691)
Q Consensus 135 --V-~~~~~~~~G~vl-lt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~ 210 (691)
+ ..-.+. +|.++ .+.++.++.++--.+...|+..- ..+.... ..+..+.+.+.++.++.++..+
T Consensus 246 ~~~~~sP~v~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~~~~~~~-------~~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 246 VDVDTTPVVV-GGVVYALAYNGNLVALDLRSGQIVWKREY----GSVNDFA-------VDGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred cccCCCcEEE-CCEEEEEEcCCeEEEEECCCCCEEEeecC----CCccCcE-------EECCEEEEEcCCCeEEEEECCC
Confidence 1 111123 44444 44567777776555556665431 1111111 2456666677788888888753
Q ss_pred cc---c---ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeecc
Q 005559 211 VQ---K---VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES 255 (691)
Q Consensus 211 ~~---~---~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d 255 (691)
-. . .....+...++ .+..|...+.+|.+..++.+-++.+.+++
T Consensus 314 G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 314 GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 22 1 11111222222 23456667778888888766566665554
No 327
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=88.71 E-value=27 Score=39.81 Aligned_cols=120 Identities=19% Similarity=0.161 Sum_probs=76.4
Q ss_pred cCChHHHHHHHHHcCCHHHHHHHHHHhCCChh-----HHHHHHHHHHhhhcCCCChHHHHHHHHHHh-ccCCCCCHHHHH
Q 005559 437 SLTASVLIGRLINANCHLLALRISEYLGMNQE-----VVIMHWACSKITASLAIPDVTLLEILLDKL-KLCKGISYAAVA 510 (691)
Q Consensus 437 ~l~~~~li~rL~~r~~~~lA~~I~~~l~~~~~-----~Vl~hWA~~kI~~~~~~~D~~l~~~I~~kl-~~~~~is~a~IA 510 (691)
.+++..|+.+.++.++...|++|-.-|+-... ..+..=+-+-.+...+-+-|..++.-.-.+ .....++.+-+-
T Consensus 408 ~l~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ 487 (545)
T PF11768_consen 408 DLGLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVL 487 (545)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHH
Confidence 67788999999999999999999988887631 233333333332221222244444433333 233456665554
Q ss_pred HHHHHhCcHHHHHHHHhcCCCCcCcccccccCCchHHHHHHHHHcCCchHHHHHHHHH
Q 005559 511 AHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHI 568 (691)
Q Consensus 511 ~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl~~~~~~~AL~kA~~S~D~dLi~~vll~l 568 (691)
+.+-.. ..+|+++-. -||.-+.+|+|..-|++-||.||-.-+-...
T Consensus 488 ey~d~V--~~~aRRfFh----------hLLR~~rfekAFlLAvdi~~~DLFmdlh~~A 533 (545)
T PF11768_consen 488 EYRDPV--SDLARRFFH----------HLLRYQRFEKAFLLAVDIGDRDLFMDLHYLA 533 (545)
T ss_pred HHHHHH--HHHHHHHHH----------HHHHhhHHHHHHHHHHhccchHHHHHHHHHH
Confidence 444433 457777754 4888899999999999999999977654433
No 328
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=88.45 E-value=22 Score=37.29 Aligned_cols=180 Identities=15% Similarity=0.129 Sum_probs=105.0
Q ss_pred CCeEEEEcCCC-ce--eEEEEecCCCCCEEEEEecC---CCe--EEEEEeCCeEEEEeCCCCeeccccCCCccccccCeE
Q 005559 65 LRKLRIFNSAG-VL--ISETVWKNPGGRLIGMSWSE---DQT--LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVV 136 (691)
Q Consensus 65 ~~~I~Iys~sG-~l--l~si~~~~~~~~Iv~~~fs~---de~--Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~ 136 (691)
-+.+.+|+-.- ++ +.++.-... ..+..|-|+. ++. |+.+-.+|.+.+|..++......|.+- .+....+.
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dt-s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l-s~~ki~~~ 122 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDT-STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL-SSKKISVV 122 (339)
T ss_pred ccceEEEeecccccCccceeeeecc-cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc-chhhhhhe
Confidence 46788888533 22 223333221 4688888975 455 567888999999977655433233221 11122222
Q ss_pred -E--EEE--eCCceEEEecCCeEEEEecCCCceEEEcCCCCcC-CCCceEEEecCCcCCCCC-eEEEEEeCCeEEEEecC
Q 005559 137 -E--CVF--WGNGVVCVTEANRYFCMADFATMKVCELARPEVE-ELPHCVAVIEPKYTMTGS-VEVLIGTDAGILMLDED 209 (691)
Q Consensus 137 -~--~~~--~~~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~-~~~~~w~vi~~~~S~d~~-~~vl~s~d~ti~l~d~~ 209 (691)
. .-+ .+.++++-.+++++-.+ +...+.+..... ++ +.-.+|.. .|+.... +.-..+.|+.+..||..
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v-~~t~~~le~vq~--wk~He~E~Wta---~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGV-YETEMVLEKVQT--WKVHEFEAWTA---KFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEE-ecceeeeeeccc--ccccceeeeee---ecccCCCceEEecCCCceEEEEEec
Confidence 1 122 24554444455554433 333343333211 22 34688987 6764433 44455568889999988
Q ss_pred ---Ccc----cccCCCeeEEEECCC-CCEEEEEeeCCeEEEEec-CCCCcee
Q 005559 210 ---GVQ----KVDDTLSQKMAVSPN-GNFVACFTHDGRLVVNNT-NFSSPVI 252 (691)
Q Consensus 210 ---~~~----~~~~~~i~~Ia~Spn-G~~IAl~t~dg~i~I~ss-d~~~~l~ 252 (691)
+.. +.|...|..|.-||- +-+||+++.|..|.+|++ +.++.+.
T Consensus 197 ~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~ 248 (339)
T KOG0280|consen 197 IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF 248 (339)
T ss_pred CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence 222 456677888887765 668999999999999976 3666653
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=87.73 E-value=16 Score=42.50 Aligned_cols=97 Identities=12% Similarity=0.140 Sum_probs=58.9
Q ss_pred eEEEEEeCCceEEEecCC--eEEEEecCCC----------ceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCe
Q 005559 135 VVECVFWGNGVVCVTEAN--RYFCMADFAT----------MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAG 202 (691)
Q Consensus 135 V~~~~~~~~G~vllt~~~--~~~~v~n~~~----------~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~t 202 (691)
...+.++++|.-+..++. ..+.|-+++. ++-....++.++..|.+-+ |+.+|.....+-.|+.
T Consensus 323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTa-----FDg~G~aytslf~dsq 397 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTA-----FDGRGNAYTTLFLDSQ 397 (635)
T ss_pred ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEE-----ECCCCCEEEeEeecce
Confidence 456778899977666553 2333333322 2222334444533465544 5678888888889999
Q ss_pred EEEEecCCcc---------------cccCCCeeEE-----EECCCCCEEEEEee
Q 005559 203 ILMLDEDGVQ---------------KVDDTLSQKM-----AVSPNGNFVACFTH 236 (691)
Q Consensus 203 i~l~d~~~~~---------------~~~~~~i~~I-----a~SpnG~~IAl~t~ 236 (691)
|..|+.+... ..+-.|-+.. +-.|+||++..++.
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 9999987521 2233333222 34899999998764
No 330
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=87.61 E-value=8 Score=43.13 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=68.3
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC-ceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY 113 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly 113 (691)
-..+++||+|+.||+.. .++.+.|.+.+- +.+..+.-+.. .....|.|.-++-.++.. +..+.++
T Consensus 219 i~~iavSpng~~iAl~t------------~~g~l~v~ssDf~~~~~e~~~~~~-~~p~~~~WCG~dav~l~~-~~~l~lv 284 (410)
T PF04841_consen 219 IIKIAVSPNGKFIALFT------------DSGNLWVVSSDFSEKLCEFDTDSK-SPPKQMAWCGNDAVVLSW-EDELLLV 284 (410)
T ss_pred eEEEEECCCCCEEEEEE------------CCCCEEEEECcccceeEEeecCcC-CCCcEEEEECCCcEEEEe-CCEEEEE
Confidence 46889999999999996 457788888753 46666666532 578999998555444444 6679999
Q ss_pred eCCCCeeccccCCCccccccCeEEEEEe-CCceEEEecCCe
Q 005559 114 NIHAELIEPNASMGKECFEENVVECVFW-GNGVVCVTEANR 153 (691)
Q Consensus 114 ~~~G~~~~~sl~~~~~~~~~~V~~~~~~-~~G~vllt~~~~ 153 (691)
.+.|+...+.+... +. -+. .+|+-++|.+.+
T Consensus 285 g~~~~~~~~~~~~~-------~~--l~~E~DG~riit~~~~ 316 (410)
T PF04841_consen 285 GPDGDSISFWYDGP-------VI--LVSEIDGVRIITSTSH 316 (410)
T ss_pred CCCCCceEEeccCc-------eE--EeccCCceEEEeCCce
Confidence 99998877666532 22 222 389988888765
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.45 E-value=4.3 Score=47.76 Aligned_cols=215 Identities=10% Similarity=0.101 Sum_probs=118.6
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEe
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYN 114 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~ 114 (691)
.+.+-.|.--..|++.= .....+.+.||--.|++-..+.+. -++.++.|.|.+- |...=+-|.+.+|+
T Consensus 19 ti~SWHPsePlfAVA~f--------S~er~GSVtIfadtGEPqr~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASF--------SPERGGSVTIFADTGEPQRDVTYP---VHATSLCWHPEEFVLAQGWEMGVSDVQK 87 (1416)
T ss_pred cccccCCCCceeEEEEe--------cCCCCceEEEEecCCCCCcccccc---eehhhhccChHHHHHhhccccceeEEEe
Confidence 34455555556676641 112578999999999987777654 3678899998776 45778889999997
Q ss_pred CCCCeeccccC-CCccccccCeEEEEEeCCceEEEecCC-eEEEEecCC--Cc-eEEEcCCCCcCCCCceEEEecCCcCC
Q 005559 115 IHAELIEPNAS-MGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFA--TM-KVCELARPEVEELPHCVAVIEPKYTM 189 (691)
Q Consensus 115 ~~G~~~~~sl~-~~~~~~~~~V~~~~~~~~G~vllt~~~-~~~~v~n~~--~~-~~~~l~~~~l~~~~~~w~vi~~~~S~ 189 (691)
.+-+... +.. .+ ...|.-..++++|-+++|.++ ..+.+|..+ +. ....+-.+.++.....|+. ..++
T Consensus 88 ~~~~e~h-tv~~th----~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cf---RL~~ 159 (1416)
T KOG3617|consen 88 TNTTETH-TVVETH----PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCF---RLSY 159 (1416)
T ss_pred cCCceee-eeccCC----CCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEE---ecCC
Confidence 7544333 222 22 355778888899999999885 345555443 11 1111111223233566765 3445
Q ss_pred CCCeEEEEE------eCC---eEEEEecCCcccccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCC
Q 005559 190 TGSVEVLIG------TDA---GILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESAL 260 (691)
Q Consensus 190 d~~~~vl~s------~d~---ti~l~d~~~~~~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~ 260 (691)
+|.-.+-++ .++ +.+-|...... +.-.+ +=+|+|...-..+.+|+++-++-. ++.-.-...+
T Consensus 160 ~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~----rs~~k-sgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~d--- 230 (1416)
T KOG3617|consen 160 DREEKFKLAKAAVTGDESALDEPFNWKESLAE----RSDEK-SGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLD--- 230 (1416)
T ss_pred ChHHhhhhhhhhccCchhhhcccccCccchhh----ccccc-cCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEcc---
Confidence 543222211 111 23333322111 11111 234777655555678999866533 2222122222
Q ss_pred CCCeEEEec-CceEEEEEc
Q 005559 261 PPEQIAWCG-MDSVLLYWN 278 (691)
Q Consensus 261 ~p~q~~WCG-~davvl~~~ 278 (691)
.-.||-|-| -+++++..+
T Consensus 231 S~vQmLf~~~~eai~~i~e 249 (1416)
T KOG3617|consen 231 SEVQMLFMGYCEAISIIIE 249 (1416)
T ss_pred chHHHHHhcccceEEEEee
Confidence 226888875 456665554
No 332
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.35 E-value=38 Score=34.99 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=63.1
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEE-EeCCeE
Q 005559 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICV-VQDGTV 110 (691)
Q Consensus 32 ~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v-~~DGtV 110 (691)
.+.....|+||+|+.+|....+ .....+.+....|..-.-... ..+..-.|++++.+.++ ..++..
T Consensus 23 ~~~~~s~AvS~dg~~~A~v~~~---------~~~~~L~~~~~~~~~~~~~~g----~~l~~PS~d~~g~~W~v~~~~~~~ 89 (253)
T PF10647_consen 23 GYDVTSPAVSPDGSRVAAVSEG---------DGGRSLYVGPAGGPVRPVLTG----GSLTRPSWDPDGWVWTVDDGSGGV 89 (253)
T ss_pred CccccceEECCCCCeEEEEEEc---------CCCCEEEEEcCCCcceeeccC----CccccccccCCCCEEEEEcCCCce
Confidence 3456789999999999998711 135667777665554433322 46788889999887654 445656
Q ss_pred EEEe--CCCCeeccccCCCccccccCeEEEEEeCCceE
Q 005559 111 YRYN--IHAELIEPNASMGKECFEENVVECVFWGNGVV 146 (691)
Q Consensus 111 ~ly~--~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~v 146 (691)
+++. ..|+........... ...|...+++++|.=
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~--~~~I~~l~vSpDG~R 125 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVDWPGL--RGRITALRVSPDGTR 125 (253)
T ss_pred EEEEecCCCcceeEEeccccc--CCceEEEEECCCCcE
Confidence 6663 345543322222211 126999999999943
No 333
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.18 E-value=39 Score=34.83 Aligned_cols=217 Identities=17% Similarity=0.238 Sum_probs=119.3
Q ss_pred CCeEEEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeC-CceEEEecCCeEEEE--ecCCCceEE---EcCC
Q 005559 98 DQTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWG-NGVVCVTEANRYFCM--ADFATMKVC---ELAR 170 (691)
Q Consensus 98 de~Lv~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~~~~~~v--~n~~~~~~~---~l~~ 170 (691)
+..|++++++| +.+|+.. +.-...... ...|..+.+-+ -+++++.+++.++.. ..+...... ..+.
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~------~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK------LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee------cceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccc
Confidence 56688999999 8888882 211111221 22377777765 566666666654443 333322110 0000
Q ss_pred -----CCcC--CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCC------cc---cccCCCeeEEEECCCCCEEEEE
Q 005559 171 -----PEVE--ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDG------VQ---KVDDTLSQKMAVSPNGNFVACF 234 (691)
Q Consensus 171 -----~~l~--~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~------~~---~~~~~~i~~Ia~SpnG~~IAl~ 234 (691)
..+. ...+..++ .-...+...+.++...+|.++...+ .. -.-.++...|++.+ +.|+.+
T Consensus 80 ~~~~~~~~~~~~~v~~f~~---~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~--~~i~v~ 154 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAV---NGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLG--NKICVG 154 (275)
T ss_pred cccccccccccCCeeEEee---ccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeC--CEEEEE
Confidence 0010 11222221 1124566677777777777755443 12 12346778888884 467777
Q ss_pred eeCCeEEEEecCCCCc--eeeccCC--------CCCCCCeEEEecCceEEEEEcCeEEEEcCCCC-----ceEee-----
Q 005559 235 THDGRLVVNNTNFSSP--VIDESCE--------SALPPEQIAWCGMDSVLLYWNDMLVMVAPQAE-----PVQYF----- 294 (691)
Q Consensus 235 t~dg~i~I~ssd~~~~--l~e~d~~--------~~~~p~q~~WCG~davvl~~~~~l~liGp~~~-----~v~f~----- 294 (691)
+.++ ..+++-+-++. +...+.. ....|..+..-+++..++-+++.-.++...|. .+.|.
T Consensus 155 ~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred eCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcCcccEEEcCCchhE
Confidence 6554 33343321111 2221211 13456677777778888888888788877774 23332
Q ss_pred --cCCCeEEeecCCceEEEecCcceeeeccchhhh
Q 005559 295 --YDEPLVLIPECDGVRILSNSSMEFLQRVPASTE 327 (691)
Q Consensus 295 --~d~~~~l~~E~DGvRIit~~~~efL~~Vp~~~~ 327 (691)
|..|.++.-..+++-|++-...+++|.++....
T Consensus 234 ~~~~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~ 268 (275)
T PF00780_consen 234 VAYSSPYLIAFSSNSIEVRSLETGELVQTIPLPNI 268 (275)
T ss_pred EEEECCEEEEECCCEEEEEECcCCcEEEEEECCCE
Confidence 233555555558899999999999999986543
No 334
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=86.95 E-value=0.7 Score=53.88 Aligned_cols=96 Identities=18% Similarity=0.175 Sum_probs=69.7
Q ss_pred eEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceee
Q 005559 179 CVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVID 253 (691)
Q Consensus 179 ~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e 253 (691)
..|+| |..+|..++..+.|.-+++|+.+... .+|.+.++.+++|.|.-++|.++.|..|+||..--...+.-
T Consensus 193 Vyca~---fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsv 269 (1113)
T KOG0644|consen 193 VYCAI---FDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSV 269 (1113)
T ss_pred eeeee---eccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHH
Confidence 44553 67789999999999999999976443 67999999999999999999999999999997532333221
Q ss_pred ccCCCCCCCCeEEE-----ecCceEEEEEc
Q 005559 254 ESCESALPPEQIAW-----CGMDSVLLYWN 278 (691)
Q Consensus 254 ~d~~~~~~p~q~~W-----CG~davvl~~~ 278 (691)
.-.+ .+....+++ .++|.++.+|+
T Consensus 270 Lrgh-tgavtaiafsP~~sss~dgt~~~wd 298 (1113)
T KOG0644|consen 270 LRGH-TGAVTAIAFSPRASSSDDGTCRIWD 298 (1113)
T ss_pred Hhcc-ccceeeeccCccccCCCCCceEecc
Confidence 1111 112223333 37888898886
No 335
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=86.63 E-value=1.9 Score=48.25 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=55.4
Q ss_pred CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECC--CCCEEEEEeeCCeEEEEecC
Q 005559 175 ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSP--NGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 175 ~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~Sp--nG~~IAl~t~dg~i~I~ssd 246 (691)
++..|-+.+ .++.+|..++..+.|-.+.+||.-... ..|.+.|..+.|=| |.+.|+++..|..|++.+.+
T Consensus 48 GH~GCVN~L--eWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 48 GHTGCVNCL--EWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred cccceecce--eecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 444555444 588899999999999999999988554 35677788888877 55789999999999998766
No 336
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=85.83 E-value=2.6 Score=44.68 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=49.0
Q ss_pred CCEEEEEecCCCeEEEEEeCCeEEEEeCC--CCeeccccCCCcc-----c---cccCeE---EEEEeCCceEEEecCC-e
Q 005559 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIH--AELIEPNASMGKE-----C---FEENVV---ECVFWGNGVVCVTEAN-R 153 (691)
Q Consensus 88 ~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~--G~~~~~sl~~~~~-----~---~~~~V~---~~~~~~~G~vllt~~~-~ 153 (691)
..|-++.|+++|+++..-+=-||++||+. .+... +++.+.- | +.+.|. +|.+++++..++|+++ +
T Consensus 273 sSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~-t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n 351 (433)
T KOG1354|consen 273 SSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVE-TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN 351 (433)
T ss_pred hhhhceEEccCCcEEEEeccceeEEEeccccCCcce-EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccc
Confidence 35788999999999887777999999774 33333 3332210 0 123333 6777899999999995 4
Q ss_pred EEEEecCC
Q 005559 154 YFCMADFA 161 (691)
Q Consensus 154 ~~~v~n~~ 161 (691)
++.+-+.+
T Consensus 352 ~frvf~~~ 359 (433)
T KOG1354|consen 352 VFRVFNLA 359 (433)
T ss_pred eEEEecCC
Confidence 66665544
No 337
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=85.68 E-value=11 Score=41.91 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=33.4
Q ss_pred eeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEe
Q 005559 219 SQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWC 268 (691)
Q Consensus 219 i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WC 268 (691)
+..|++||+|++.|+...-|+|.+++..-..++.-++. .+--|+.|.
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG---YRdAqc~wi 356 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG---YRDAQCGWI 356 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc---CccceEEEE
Confidence 78899999998777753349999998875666554432 233578886
No 338
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.58 E-value=33 Score=37.48 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=47.1
Q ss_pred CEEEEcCCCC-eEEEEecCchhhhhhcccCCCeEEEEcCCCcee-EEEEecCCCCCEEEEEecCCCe--EEEEEeCCeEE
Q 005559 36 NKVACAPFGG-PIAVIRDDSKIVQLYAESALRKLRIFNSAGVLI-SETVWKNPGGRLIGMSWSEDQT--LICVVQDGTVY 111 (691)
Q Consensus 36 ~~vA~sp~GG-~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll-~si~~~~~~~~Iv~~~fs~de~--Lv~v~~DGtV~ 111 (691)
.-+|+||+-. ++..++ .+++|+|++..-... .+...+ ..+.+..|..||. +..+..+|.|.
T Consensus 197 rdlafSp~~~GLl~~as------------l~nkiki~dlet~~~vssy~a~---~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 197 RDLAFSPFNEGLLGLAS------------LGNKIKIMDLETSCVVSSYIAY---NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred hhhccCccccceeeeec------------cCceEEEEecccceeeeheecc---CCceeeeeccCCcceeEEeccCceEE
Confidence 3568888765 444443 578899999754443 333332 4699999988766 45899999999
Q ss_pred EEeCC
Q 005559 112 RYNIH 116 (691)
Q Consensus 112 ly~~~ 116 (691)
+||+.
T Consensus 262 vyD~R 266 (463)
T KOG1645|consen 262 VYDMR 266 (463)
T ss_pred EEEcc
Confidence 99985
No 339
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=85.24 E-value=19 Score=32.43 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=43.8
Q ss_pred cCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCe
Q 005559 63 SALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAEL 119 (691)
Q Consensus 63 ~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~ 119 (691)
+.|..|+||... .++.++.=. +.|..+.=...++.+-+++||||-+|+-.-.+
T Consensus 22 s~D~~IRvf~~~-e~~~Ei~e~---~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 22 SDDFEIRVFKGD-EIVAEITET---DKVTSLCSLGGGRFAYALANGTVGVYDRSQRL 74 (111)
T ss_pred cCCcEEEEEeCC-cEEEEEecc---cceEEEEEcCCCEEEEEecCCEEEEEeCccee
Confidence 368999999965 889998843 57888888888899999999999999775444
No 340
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=84.97 E-value=58 Score=34.71 Aligned_cols=190 Identities=14% Similarity=0.134 Sum_probs=101.4
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCC--------
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDG-------- 108 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DG-------- 108 (691)
..++||+|..+-++-++. ++..+.|-||+....+-..=.|...+=..+.+-|.||++.++|..-|
T Consensus 55 Hg~fs~dG~~LytTEnd~-------~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~G 127 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDY-------ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSG 127 (305)
T ss_pred CEEEcCCCCEEEEecccc-------CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccC
Confidence 567999999886664331 25799999999985444444444421257888899999655554433
Q ss_pred eEEEE------------eCCCCeec-cccCCCccccccCeEEEEEeCCceEEEecCCe--------EEEEecCCCceEEE
Q 005559 109 TVYRY------------NIHAELIE-PNASMGKECFEENVVECVFWGNGVVCVTEANR--------YFCMADFATMKVCE 167 (691)
Q Consensus 109 tV~ly------------~~~G~~~~-~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~--------~~~v~n~~~~~~~~ 167 (691)
..++. ...|+++. ..++.. -.+..|.-..+.++|.|+.-.... ++.+..-.++ +..
T Consensus 128 R~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~--~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~ 204 (305)
T PF07433_consen 128 RAKLNLDTMQPSLVYLDARSGALLEQVELPPD--LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRL 204 (305)
T ss_pred ceecChhhcCCceEEEecCCCceeeeeecCcc--ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-cee
Confidence 23322 11355432 223211 014457777777889888774432 3333232221 222
Q ss_pred cCCCCcC--CC-CceEEEecCCcCCCCCeEEEE-EeCCeEEEEecCCcc---cccCCCeeEEEECCCCCEEEEEeeCCeE
Q 005559 168 LARPEVE--EL-PHCVAVIEPKYTMTGSVEVLI-GTDAGILMLDEDGVQ---KVDDTLSQKMAVSPNGNFVACFTHDGRL 240 (691)
Q Consensus 168 l~~~~l~--~~-~~~w~vi~~~~S~d~~~~vl~-s~d~ti~l~d~~~~~---~~~~~~i~~Ia~SpnG~~IAl~t~dg~i 240 (691)
+.-+... .. --+=+| .++.++..++.. ..++.+.+||..... .....-...++..++| |+++-. .|.+
T Consensus 205 ~~~p~~~~~~l~~Y~gSI---a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 205 LPAPEEQWRRLNGYIGSI---AADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred ccCChHHHHhhCCceEEE---EEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCC-CccE
Confidence 2211100 00 111122 355677655444 448899999766433 2233446677777777 555432 3444
Q ss_pred E
Q 005559 241 V 241 (691)
Q Consensus 241 ~ 241 (691)
.
T Consensus 280 ~ 280 (305)
T PF07433_consen 280 I 280 (305)
T ss_pred E
Confidence 3
No 341
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.94 E-value=65 Score=35.82 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCceeEE----------EEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeec-cccCCCc-cccc
Q 005559 65 LRKLRIFNSAGVLISE----------TVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIE-PNASMGK-ECFE 132 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~s----------i~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~-~sl~~~~-~~~~ 132 (691)
++.+-++...|+++.+ +.-.. ...+.++.|.+++.++++..+|.+..=+-.|+--+ .++.... ....
T Consensus 249 dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~-~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~ 327 (398)
T PLN00033 249 DGDYVAVSSRGNFYLTWEPGQPYWQPHNRAS-ARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRG 327 (398)
T ss_pred CCCEEEEECCccEEEecCCCCcceEEecCCC-ccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCC
Confidence 4555566655555433 22222 25799999999999999999998775555664211 0111100 0002
Q ss_pred cCeEEEEEeCCceEEEecCCeEEEE
Q 005559 133 ENVVECVFWGNGVVCVTEANRYFCM 157 (691)
Q Consensus 133 ~~V~~~~~~~~G~vllt~~~~~~~v 157 (691)
..+.++.+.++|..++.+...+...
T Consensus 328 ~~l~~v~~~~d~~~~a~G~~G~v~~ 352 (398)
T PLN00033 328 FGILDVGYRSKKEAWAAGGSGILLR 352 (398)
T ss_pred cceEEEEEcCCCcEEEEECCCcEEE
Confidence 3477888877777777766543333
No 342
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=84.56 E-value=11 Score=34.84 Aligned_cols=126 Identities=11% Similarity=0.010 Sum_probs=77.6
Q ss_pred hcCChHHHHHHHHHcCCHHHHHHHHHHhCCC---hhHHHHHHHHHHhhhcCCCChHHHHHHHHHHhccCCCCCHHHHHHH
Q 005559 436 KSLTASVLIGRLINANCHLLALRISEYLGMN---QEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAH 512 (691)
Q Consensus 436 ~~l~~~~li~rL~~r~~~~lA~~I~~~l~~~---~~~Vl~hWA~~kI~~~~~~~D~~l~~~I~~kl~~~~~is~a~IA~~ 512 (691)
..+.++.+|..+..+++..++++-=+.+--. ...+..-=...-++ .+.+++.+.+.+ .....+...++..
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~----~~~~~ll~~l~~---~~~~yd~~~~~~~ 78 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK----YDPQKEIERLDN---KSNHYDIEKVGKL 78 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH----HCHHHHHHHHHh---ccccCCHHHHHHH
Confidence 3567888999999888887777755543211 11121111111111 134455555543 3457899999999
Q ss_pred HHHhCcHHHHHHHHhcCCCCcCcccccccC-CchHHHHHHHHHcCCchHHHHHHHHH
Q 005559 513 ADKSGRRKLAAMLVEHEPRSSKQVPLLLSI-GEEDTALVKATESGDTDLVYLVIFHI 568 (691)
Q Consensus 513 A~~~GR~~LA~~Ll~~E~~~~~qVplLl~~-~~~~~AL~kA~~S~D~dLi~~vll~l 568 (691)
+.+.|..+.|..|+..-..-.+-|.++++- ++.+.|++-|.+-+|+++-..++-+.
T Consensus 79 c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~ 135 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKAL 135 (140)
T ss_pred HHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999998888886665555555555544 56666666666666666666655443
No 343
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=84.48 E-value=80 Score=38.24 Aligned_cols=197 Identities=13% Similarity=0.134 Sum_probs=105.2
Q ss_pred CeEEEEEeCCeEEEE--eCCCCeeccc------cCCCccccccCeEEEEEe--CCc--eEEEecC---C--eEEEE---e
Q 005559 99 QTLICVVQDGTVYRY--NIHAELIEPN------ASMGKECFEENVVECVFW--GNG--VVCVTEA---N--RYFCM---A 158 (691)
Q Consensus 99 e~Lv~v~~DGtV~ly--~~~G~~~~~s------l~~~~~~~~~~V~~~~~~--~~G--~vllt~~---~--~~~~v---~ 158 (691)
+=+++|..+|.+++| +..|+..+.+ ++.. ..-|..|.|. ++| ++++|-+ + ++|.| |
T Consensus 63 ~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s----~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W 138 (753)
T PF11635_consen 63 SACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSS----DDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDW 138 (753)
T ss_pred eEEEEEecCCeEEEEEEcCCCccceeehhhhcccccc----ccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEec
Confidence 447899999999999 4556654422 1112 3446667775 566 5555544 2 35554 4
Q ss_pred cCC-----C---ceE--EEcCCC-CcC---------------CCCceEEEecCCcCCCCCeEEEEEe------CCeEEEE
Q 005559 159 DFA-----T---MKV--CELARP-EVE---------------ELPHCVAVIEPKYTMTGSVEVLIGT------DAGILML 206 (691)
Q Consensus 159 n~~-----~---~~~--~~l~~~-~l~---------------~~~~~w~vi~~~~S~d~~~~vl~s~------d~ti~l~ 206 (691)
+-+ . |.+ ..+... +.. ..-++..++++....+....+++.+ ..+|+.|
T Consensus 139 ~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~Rw 218 (753)
T PF11635_consen 139 NAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERW 218 (753)
T ss_pred cCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEE
Confidence 511 1 111 111110 000 1134677877554445555555554 3468888
Q ss_pred ecCCcc--------c-----------------------ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecC-CCCceeec
Q 005559 207 DEDGVQ--------K-----------------------VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTN-FSSPVIDE 254 (691)
Q Consensus 207 d~~~~~--------~-----------------------~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd-~~~~l~e~ 254 (691)
...... . ...+.|.+|....-|.++|++-+||+|.+++.. ++... +.
T Consensus 219 eL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~-~~ 297 (753)
T PF11635_consen 219 ELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELN-ET 297 (753)
T ss_pred EEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhc-cc
Confidence 876432 0 123557888888889999999999999998753 33322 22
Q ss_pred cCCCCCCCCeEEEecCceEEEEEcCeEEEE-cCCCCceEeecCCCeEEeecCCc-eE
Q 005559 255 SCESALPPEQIAWCGMDSVLLYWNDMLVMV-APQAEPVQYFYDEPLVLIPECDG-VR 309 (691)
Q Consensus 255 d~~~~~~p~q~~WCG~davvl~~~~~l~li-Gp~~~~v~f~~d~~~~l~~E~DG-vR 309 (691)
+.. ..+ .+.|.-..+-...+- .+.+.++.|++..-.++.-+.|| ++
T Consensus 298 ~~~--~~~-------~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 298 RTN--GEP-------PNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK 345 (753)
T ss_pred ccc--cCC-------ccccccccccccccccCCCCceEEECcccceEEEEecCCCce
Confidence 100 000 011111111111110 11345788888877777777777 55
No 344
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=84.33 E-value=8.6 Score=40.38 Aligned_cols=31 Identities=13% Similarity=0.180 Sum_probs=24.0
Q ss_pred CCeeEEEECCCCCEEEEEeeCCeEEEEecCCC
Q 005559 217 TLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS 248 (691)
Q Consensus 217 ~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~ 248 (691)
..|..+.|||||++|+.-. -.+++||.....
T Consensus 281 sSISD~kFs~ngryIlsRd-yltvkiwDvnm~ 311 (460)
T COG5170 281 SSISDFKFSDNGRYILSRD-YLTVKIWDVNMA 311 (460)
T ss_pred hhhcceEEcCCCcEEEEec-cceEEEEecccc
Confidence 5688899999999998743 258888876554
No 345
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.07 E-value=50 Score=37.61 Aligned_cols=96 Identities=9% Similarity=-0.040 Sum_probs=65.8
Q ss_pred CCCeEEEEEeCCeEEEEecCCcc-------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCC
Q 005559 190 TGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPP 262 (691)
Q Consensus 190 d~~~~vl~s~d~ti~l~d~~~~~-------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p 262 (691)
+...+|+....|.|.+.+..+.. ..|.++|..+..+-+-..|=+.+.|+.+-.|+-.-.+.++++... +..+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~ 147 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLV 147 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCcc
Confidence 34455555668888888877554 357888988888877777777777888877776657778888765 3456
Q ss_pred CeEEEecCceEEEEEcCeEEEEcC
Q 005559 263 EQIAWCGMDSVLLYWNDMLVMVAP 286 (691)
Q Consensus 263 ~q~~WCG~davvl~~~~~l~liGp 286 (691)
..++-.++-.+.+.-..++++++-
T Consensus 148 ~sl~is~D~~~l~~as~~ik~~~~ 171 (541)
T KOG4547|consen 148 SSLCISPDGKILLTASRQIKVLDI 171 (541)
T ss_pred ceEEEcCCCCEEEeccceEEEEEc
Confidence 677766776666644445544443
No 346
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=83.97 E-value=3.5 Score=45.66 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=68.9
Q ss_pred CCEEEEEecCC-CeEEEEEeCCeEEEEeCC---C----------CeeccccCCCccccccCeEEEEEeC-CceEEEecC-
Q 005559 88 GRLIGMSWSED-QTLICVVQDGTVYRYNIH---A----------ELIEPNASMGKECFEENVVECVFWG-NGVVCVTEA- 151 (691)
Q Consensus 88 ~~Iv~~~fs~d-e~Lv~v~~DGtV~ly~~~---G----------~~~~~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~- 151 (691)
-.|.++.|+.+ ++|++...|--+++++.. | .+.+--+.+|.. ...|-.+.||+ .--.|++++
T Consensus 337 v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN--~~TVKgVNFfGPrsEyVvSGSD 414 (559)
T KOG1334|consen 337 VNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN--SRTVKGVNFFGPRSEYVVSGSD 414 (559)
T ss_pred ccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccc--ccccceeeeccCccceEEecCc
Confidence 47999999965 567766666668888552 5 122211444433 34588999997 555566655
Q ss_pred -CeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCc
Q 005559 152 -NRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGV 211 (691)
Q Consensus 152 -~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~ 211 (691)
|+|+.+..-.+..+.-+. +.-+..++++|+ |---+++.-+.|..|++|...+.
T Consensus 415 CGhIFiW~K~t~eii~~Me-----gDr~VVNCLEpH--P~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 415 CGHIFIWDKKTGEIIRFME-----GDRHVVNCLEPH--PHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred cceEEEEecchhHHHHHhh-----cccceEeccCCC--CCCchhhccCCccceeeecCCcc
Confidence 687766543333222222 223455566654 33344555566889999988543
No 347
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=83.89 E-value=51 Score=39.04 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=43.8
Q ss_pred CCCeEEEEecCchhhhhhcccCCCeEEEEc-CCCceeEEEEecCCCCCEEEEEecCC-----------CeEE--EEEeCC
Q 005559 43 FGGPIAVIRDDSKIVQLYAESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSED-----------QTLI--CVVQDG 108 (691)
Q Consensus 43 ~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys-~sG~ll~si~~~~~~~~Iv~~~fs~d-----------e~Lv--~v~~DG 108 (691)
.||+||-.+ ...|.+-+ .+-++|++|..|+ ..|..+.|.|. .+|+ +..-.|
T Consensus 25 ~~GLiAygs-------------hslV~VVDs~s~q~iqsie~h~--s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 25 PSGLIAYGS-------------HSLVSVVDSRSLQLIQSIELHQ--SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred ccceEEEec-------------CceEEEEehhhhhhhhccccCc--cceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 578999875 34455555 4789999999988 78999999862 3443 455679
Q ss_pred eEEEEeCC
Q 005559 109 TVYRYNIH 116 (691)
Q Consensus 109 tV~ly~~~ 116 (691)
.|.+||..
T Consensus 90 rIil~d~~ 97 (1062)
T KOG1912|consen 90 RIILVDFV 97 (1062)
T ss_pred cEEEEEeh
Confidence 99999885
No 348
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=83.34 E-value=68 Score=34.23 Aligned_cols=251 Identities=11% Similarity=0.116 Sum_probs=104.2
Q ss_pred CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCC-CCe-eccccCCCccccccCeEEEEEeCCceEEEecC
Q 005559 74 AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEA 151 (691)
Q Consensus 74 sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~-G~~-~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~ 151 (691)
+|+.-..+..... ..+.++.|..+.+-.+|..+|++. -+.+ |+- .........+ .......+.|.++...++-..
T Consensus 4 ~~~~W~~v~l~t~-~~l~dV~F~d~~~G~~VG~~g~il-~T~DGG~tW~~~~~~~~~~-~~~~l~~I~f~~~~g~ivG~~ 80 (302)
T PF14870_consen 4 SGNSWQQVSLPTD-KPLLDVAFVDPNHGWAVGAYGTIL-KTTDGGKTWQPVSLDLDNP-FDYHLNSISFDGNEGWIVGEP 80 (302)
T ss_dssp SS--EEEEE-S-S-S-EEEEEESSSS-EEEEETTTEEE-EESSTTSS-EE-----S------EEEEEEEETTEEEEEEET
T ss_pred cCCCcEEeecCCC-CceEEEEEecCCEEEEEecCCEEE-EECCCCccccccccCCCcc-ceeeEEEEEecCCceEEEcCC
Confidence 4444555554432 479999999666778889999654 3444 432 2112221100 012244555554332333333
Q ss_pred CeEEEEecCCCceEEEcCC-CCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEEC
Q 005559 152 NRYFCMADFATMKVCELAR-PEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVS 225 (691)
Q Consensus 152 ~~~~~v~n~~~~~~~~l~~-~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~S 225 (691)
+-++.-.| .+..-.+++- .++...+ +.+.. .+.....++...+.||.-.-.|.. ....+.+..+..+
T Consensus 81 g~ll~T~D-gG~tW~~v~l~~~lpgs~--~~i~~----l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 81 GLLLHTTD-GGKTWERVPLSSKLPGSP--FGITA----LGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp TEEEEESS-TTSS-EE----TT-SS-E--EEEEE----EETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-
T ss_pred ceEEEecC-CCCCcEEeecCCCCCCCe--eEEEE----cCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEEC
Confidence 33333333 1222222221 1121122 22211 122334445556666665555554 3456789999999
Q ss_pred CCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcC-CCC---------------
Q 005559 226 PNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAP-QAE--------------- 289 (691)
Q Consensus 226 pnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp-~~~--------------- 289 (691)
++|+++|.. ..|.++.-...=++.-..++..++.+...|.|..+..+.+.=+...+.... .++
T Consensus 154 ~dG~~vavs-~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 154 SDGRYVAVS-SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp TTS-EEEEE-TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred CCCcEEEEE-CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCc
Confidence 999988776 467776443332334556665556677788888776664433332222221 111
Q ss_pred ----ceEeecCCCeEEeecCCceEEEecCcceeeeccchh---hhhhcccCCCC
Q 005559 290 ----PVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPAS---TEQIFAIGSTS 336 (691)
Q Consensus 290 ----~v~f~~d~~~~l~~E~DGvRIit~~~~efL~~Vp~~---~~~If~igS~~ 336 (691)
.+-|..+..+ .+.--.|--+.|.+..+=-++.|.. ..|+++|-+..
T Consensus 233 ~~~ld~a~~~~~~~-wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~ 285 (302)
T PF14870_consen 233 YGILDLAYRPPNEI-WAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVN 285 (302)
T ss_dssp S-EEEEEESSSS-E-EEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEE
T ss_pred eeeEEEEecCCCCE-EEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcC
Confidence 1122222233 3344455667777777777776652 23555554443
No 349
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.89 E-value=38 Score=36.55 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=42.6
Q ss_pred CEEEEEecCCCeEEEEEeCCeEEEEeCCCCeec-c-ccCCCccccccCeEEEEEeC----CceEEEecC
Q 005559 89 RLIGMSWSEDQTLICVVQDGTVYRYNIHAELIE-P-NASMGKECFEENVVECVFWG----NGVVCVTEA 151 (691)
Q Consensus 89 ~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~-~-sl~~~~~~~~~~V~~~~~~~----~G~vllt~~ 151 (691)
+..+|.|.||+++++....|+|++++..|+... . .+..-....+.+...+.+.+ +|.+.+..+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 578999999999999999999999998776511 0 11100001256788989987 577766655
No 350
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.89 E-value=19 Score=39.26 Aligned_cols=139 Identities=12% Similarity=0.062 Sum_probs=75.2
Q ss_pred cCeEEEEEeC--CceEEEecCCeEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEe-CCeEEEEecC
Q 005559 133 ENVVECVFWG--NGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDED 209 (691)
Q Consensus 133 ~~V~~~~~~~--~G~vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~~ 209 (691)
.-|.+..|++ +|++.+.+-++...+.+++......--. .....|++ .|.-|..-.+.++. +|.|+++|..
T Consensus 194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~----a~~~~wSC---~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI----AYNQIWSC---CWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred hhhhhhccCccccceeeeeccCceEEEEecccceeeehee----ccCCceee---eeccCCcceeEEeccCceEEEEEcc
Confidence 3477888876 8888888878777777776443322211 11122333 22235555566655 7889999987
Q ss_pred Ccc--------cccCCCeeEEEE------CCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEec-CceEE
Q 005559 210 GVQ--------KVDDTLSQKMAV------SPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCG-MDSVL 274 (691)
Q Consensus 210 ~~~--------~~~~~~i~~Ia~------SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG-~davv 274 (691)
... .....||.+|+. +|.|-++++...+-.-|=+.-+++..-+-..++.++...+|+.|| +|.++
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l 346 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLL 346 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCccceEE
Confidence 443 246677777643 333444444443323332222222221111223344567899997 56666
Q ss_pred EEEc
Q 005559 275 LYWN 278 (691)
Q Consensus 275 l~~~ 278 (691)
+.+.
T Consensus 347 ~tyR 350 (463)
T KOG1645|consen 347 LTYR 350 (463)
T ss_pred EEec
Confidence 6664
No 351
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=82.75 E-value=57 Score=39.72 Aligned_cols=88 Identities=11% Similarity=0.113 Sum_probs=46.7
Q ss_pred CCCEEEEEeeCCeEEEEec-CCCCceeeccCCCCCCCCeEEEec-CceEEEE----EcCeEEEEcCCCCceEeecCCCeE
Q 005559 227 NGNFVACFTHDGRLVVNNT-NFSSPVIDESCESALPPEQIAWCG-MDSVLLY----WNDMLVMVAPQAEPVQYFYDEPLV 300 (691)
Q Consensus 227 nG~~IAl~t~dg~i~I~ss-d~~~~l~e~d~~~~~~p~q~~WCG-~davvl~----~~~~l~liGp~~~~v~f~~d~~~~ 300 (691)
+++.+.+.|..|.++.... +|...- .......-|.--+ +|.++.. =+++++++...|..++|.-++...
T Consensus 699 ~~~~ll~vT~~G~~Kr~~l~e~~~~~-----R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~eI~~ 773 (800)
T TIGR01063 699 EESYLLIVTENGYGKRTSIEEYRETS-----RGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQDVSE 773 (800)
T ss_pred cccEEEEEecCCcEEEEEHHHccccC-----CCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhhCCc
Confidence 3457888888888876643 332110 0000011111111 2333211 134688888888888987665544
Q ss_pred EeecCCceEEEecCcceee
Q 005559 301 LIPECDGVRILSNSSMEFL 319 (691)
Q Consensus 301 l~~E~DGvRIit~~~~efL 319 (691)
...---|++++.....+.+
T Consensus 774 ~gR~a~GVk~i~L~~~D~v 792 (800)
T TIGR01063 774 QGRNTQGVRLIRLDEDDKL 792 (800)
T ss_pred cccCCCCeeeeeeCCCCEE
Confidence 4444568888877555444
No 352
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=82.61 E-value=61 Score=38.15 Aligned_cols=164 Identities=18% Similarity=0.249 Sum_probs=88.9
Q ss_pred CCEEEEEecCCCeE-EEEEeCCeEEEEeCC-CCeecc-ccCCCccccccCeEEEEE--------eCCceEEEec-CC--e
Q 005559 88 GRLIGMSWSEDQTL-ICVVQDGTVYRYNIH-AELIEP-NASMGKECFEENVVECVF--------WGNGVVCVTE-AN--R 153 (691)
Q Consensus 88 ~~Iv~~~fs~de~L-v~v~~DGtV~ly~~~-G~~~~~-sl~~~~~~~~~~V~~~~~--------~~~G~vllt~-~~--~ 153 (691)
++|+++.|..+++. ++|.++|.|.+|+.. +.+... .+.... ...|.--+| -.+.++++.. ++ -
T Consensus 130 ~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~---~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 130 DKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKS---SINVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccc---ccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 68999999977775 689999999999993 222110 111110 122221122 1244444444 22 2
Q ss_pred EEEEecC--CCceEEEcCCCCc--CC-CCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-------c--cc---C
Q 005559 154 YFCMADF--ATMKVCELARPEV--EE-LPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------K--VD---D 216 (691)
Q Consensus 154 ~~~v~n~--~~~~~~~l~~~~l--~~-~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-------~--~~---~ 216 (691)
.|.+-.+ ++.....+...-. .. .....+. .+|....+ .+++|..++.-.++ . .. .
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y------~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~ 278 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCY------QFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESD 278 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEE------eCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccc
Confidence 2322222 3333333321000 00 1222232 25666666 67788888876555 1 11 2
Q ss_pred CCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEE
Q 005559 217 TLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIA 266 (691)
Q Consensus 217 ~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~ 266 (691)
..|.-.++|||- + +.+.+++|++++--|...+.||++. .-.|.|+-
T Consensus 279 ~~vSl~~~s~nR--v-LLs~~nkIyLld~~~~siLse~~~s-~~~~~qll 324 (670)
T PF10395_consen 279 DLVSLKPPSPNR--V-LLSVNNKIYLLDLKFESILSEFELS-HPKPFQLL 324 (670)
T ss_pred cceEeecCCCCe--E-EEEcCCEEEEEeehhhhhhhhhhcc-CCccceee
Confidence 455566777773 3 3345789999999999999999843 22455554
No 353
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=82.21 E-value=17 Score=42.61 Aligned_cols=106 Identities=20% Similarity=0.340 Sum_probs=66.6
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC-CceeEEEEecCCCCCEEEEEec--CCCe-EEEEEeCCeEEE
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWS--EDQT-LICVVQDGTVYR 112 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-G~ll~si~~~~~~~~Iv~~~fs--~de~-Lv~v~~DGtV~l 112 (691)
.+.+|. -+-+|++. +....+.||+.. |.+-.+-.+.. .+.|.++.|+ ||++ ++.|+=...|.+
T Consensus 34 li~gss-~~k~a~V~-----------~~~~~LtIWD~~~~~lE~~~~f~~-~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 34 LISGSS-IKKIAVVD-----------SSRSELTIWDTRSGVLEYEESFSE-DDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred eEeecc-cCcEEEEE-----------CCCCEEEEEEcCCcEEEEeeeecC-CCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 555666 56677774 257899999985 45544555533 2789999997 5777 467888889999
Q ss_pred EeCC-CCe----------eccccCCCccccccCeEEEEEe-CCceEEEecCCeEEEEec
Q 005559 113 YNIH-AEL----------IEPNASMGKECFEENVVECVFW-GNGVVCVTEANRYFCMAD 159 (691)
Q Consensus 113 y~~~-G~~----------~~~sl~~~~~~~~~~V~~~~~~-~~G~vllt~~~~~~~v~n 159 (691)
|... -.+ .+..+... ....|-+ .+| ++|..++..++.++....
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~---T~h~Igd-s~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSH---TPHPIGD-SIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecC---CCCCccc-eeEecCCeEEEEeCCEEEEECC
Confidence 9441 111 11111111 1133555 456 699888887777776544
No 354
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.67 E-value=22 Score=40.24 Aligned_cols=84 Identities=5% Similarity=-0.043 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCCceeEEEEecCC-----CCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEE
Q 005559 64 ALRKLRIFNSAGVLISETVWKNP-----GGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVEC 138 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~-----~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~ 138 (691)
.++.|.=|++.=+=...+.|.+. +..--+++=|.+|.+|+++.+|.+|+||--|..-++-++.- -..|..+
T Consensus 402 s~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgL----G~~I~hV 477 (644)
T KOG2395|consen 402 SDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGL----GDAIKHV 477 (644)
T ss_pred cCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhccccc----CCceeeE
Confidence 46677777764332334455432 12577788888999999999999999998887655445432 2457777
Q ss_pred EEeCCceEEEecC
Q 005559 139 VFWGNGVVCVTEA 151 (691)
Q Consensus 139 ~~~~~G~vllt~~ 151 (691)
-+..+|..++..-
T Consensus 478 dvtadGKwil~Tc 490 (644)
T KOG2395|consen 478 DVTADGKWILATC 490 (644)
T ss_pred EeeccCcEEEEec
Confidence 7888886655443
No 355
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=81.39 E-value=7.1 Score=41.60 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=43.6
Q ss_pred CeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCe
Q 005559 66 RKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAEL 119 (691)
Q Consensus 66 ~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~ 119 (691)
..++++-..-.++.++..|. +.+.+..|++... |.+..+|-.|.+||+-|..
T Consensus 178 t~lr~~~~~~~~i~~~~~h~--~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 178 TMLKLEQNGCQLITTFNGHT--GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred EEEEEeecCCceEEEEcCcc--cceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence 34567777778999999998 8999999999655 6799999999999998753
No 356
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.85 E-value=3.9 Score=45.75 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=39.8
Q ss_pred cCCCeEEEEcC--CCceeEE--EEe--cCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCC-CCeec
Q 005559 63 SALRKLRIFNS--AGVLISE--TVW--KNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AELIE 121 (691)
Q Consensus 63 ~~~~~I~Iys~--sG~ll~s--i~~--~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~-G~~~~ 121 (691)
+.|+++++|+. .|.-+.+ ..| .....+|.+++|-.+-+ -+++-||-+.+||++ |.++.
T Consensus 754 SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~ScD~giHlWDPFigr~La 818 (1034)
T KOG4190|consen 754 SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASCDGGIHLWDPFIGRLLA 818 (1034)
T ss_pred cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeeccCcceeecccccchhH
Confidence 46999999994 4555543 333 22225799999984433 567788889999996 66543
No 357
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=80.80 E-value=22 Score=40.56 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=36.9
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCee
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELI 120 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~ 120 (691)
..+..-+++.+|.+.+.++... .....+...+||.|+++.. +.++.+|+.|+..
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~--~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~ 179 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDS--GSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVI 179 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGG--T--SSEEE-TTS-EEEEEB-TEEEEE-TT--EE
T ss_pred CCceEEEECCCccEEEEEccCc--cccceeeEcCCCCEEEecC-CceEEEcCCCCEE
Confidence 5788999999999998888766 3333377889999998777 7799999999963
No 358
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.92 E-value=3.5 Score=49.77 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=55.4
Q ss_pred eEEEEEeCCeEEEEecCCcc------cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCC--CCCCCe
Q 005559 193 VEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES--ALPPEQ 264 (691)
Q Consensus 193 ~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~--~~~p~q 264 (691)
.++..+..|.+...|.++.. ....+||+.++||-||++++.+-.+|-|.+|+.+-.+.+..++.+. -.....
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 34444445556666666543 2457899999999999999999999999999988667776665331 112235
Q ss_pred EEEecCceEE
Q 005559 265 IAWCGMDSVL 274 (691)
Q Consensus 265 ~~WCG~davv 274 (691)
+.|-+.++++
T Consensus 181 v~~t~~nS~l 190 (1206)
T KOG2079|consen 181 VGRTSQNSKL 190 (1206)
T ss_pred EEEeCCCcEE
Confidence 5565555543
No 359
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=79.74 E-value=1.6e+02 Score=36.59 Aligned_cols=90 Identities=13% Similarity=0.242 Sum_probs=50.8
Q ss_pred cCCCeEEEEcCCCceeEEEEe-------cC--------------CCCCEEEEE----ecCCCeEEEEEeCCeEEEEeCCC
Q 005559 63 SALRKLRIFNSAGVLISETVW-------KN--------------PGGRLIGMS----WSEDQTLICVVQDGTVYRYNIHA 117 (691)
Q Consensus 63 ~~~~~I~Iys~sG~ll~si~~-------~~--------------~~~~Iv~~~----fs~de~Lv~v~~DGtV~ly~~~G 117 (691)
+....|-+||+.|+..+.-.+ .. .+..|+++. |.++..|+.++.+|.|+...+.-
T Consensus 561 ~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~e 640 (957)
T PRK13979 561 NTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDK 640 (957)
T ss_pred cCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhh
Confidence 356778888888875543221 10 012344332 23334578999999999886631
Q ss_pred ---C---eeccccCCCccccccCeEEEEEeCCc-----eEEEecCCeEEEE
Q 005559 118 ---E---LIEPNASMGKECFEENVVECVFWGNG-----VVCVTEANRYFCM 157 (691)
Q Consensus 118 ---~---~~~~sl~~~~~~~~~~V~~~~~~~~G-----~vllt~~~~~~~v 157 (691)
. .....+.. .+.++.+.+...| ++++|.++....+
T Consensus 641 f~~~r~~~~aikL~e-----~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF 686 (957)
T PRK13979 641 FVTNYTKLMALKLKK-----GEKLIKVKLVDRTREEKFIKIKTKKGLSFTV 686 (957)
T ss_pred ccccccceEEEEcCC-----CCEEEEEEEcCCCCCCCEEEEEeCCCcEEEE
Confidence 0 11122322 3557887776543 6777877764444
No 360
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=78.95 E-value=1e+02 Score=33.41 Aligned_cols=248 Identities=13% Similarity=0.115 Sum_probs=121.7
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC-ceeEEEEecCC-----CCCEEEEEecCCCeEEE---EEeC
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLISETVWKNP-----GGRLIGMSWSEDQTLIC---VVQD 107 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-~ll~si~~~~~-----~~~Iv~~~fs~de~Lv~---v~~D 107 (691)
.++.||+|.-|.++..-.. +..-......|.+|+..- .+...|.-... ......+.+|.||+.+. .+--
T Consensus 40 ~~~~spdgk~~y~a~T~~s--R~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYS--RGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEE--ETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred ceeECCCCCEEEEEEEEEe--ccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 4678999999998742110 000112467899999854 55666665431 01223457788888543 3445
Q ss_pred CeEEEEeCCC-CeeccccCCCccccccCeEEEEEe-CCceEEEecCCeEEEEe-cCCCceEEEcCCCCcC-CCCceEEEe
Q 005559 108 GTVYRYNIHA-ELIEPNASMGKECFEENVVECVFW-GNGVVCVTEANRYFCMA-DFATMKVCELARPEVE-ELPHCVAVI 183 (691)
Q Consensus 108 GtV~ly~~~G-~~~~~sl~~~~~~~~~~V~~~~~~-~~G~vllt~~~~~~~v~-n~~~~~~~~l~~~~l~-~~~~~w~vi 183 (691)
..|-+.|+.. ++.. .+.. .+=+.+--+ +.|+..+.++|.+..+. +-++....+-+.+... .+| .+.
T Consensus 118 ~SVtVVDl~~~kvv~-ei~~------PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp---~f~ 187 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVG-EIDT------PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDP---LFE 187 (342)
T ss_dssp EEEEEEETTTTEEEE-EEEG------TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS----B-S
T ss_pred CeEEEEECCCCceee-eecC------CCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcc---ccc
Confidence 6688888854 3333 2211 111111113 36777777888766653 2122211211111110 112 122
Q ss_pred cCCcCCCCCeEEEEEeCCeEEEEecCCcc-------c---------c-cCCCeeEEEECCCCCEEEEEeeCC--------
Q 005559 184 EPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------K---------V-DDTLSQKMAVSPNGNFVACFTHDG-------- 238 (691)
Q Consensus 184 ~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-------~---------~-~~~~i~~Ia~SpnG~~IAl~t~dg-------- 238 (691)
.|.++..+...++.+.+|.||-.+..+.. . . .+|.+.-+++.+..+.|=.+-+.|
T Consensus 188 ~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp 267 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP 267 (342)
T ss_dssp --EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred ccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence 33344567788889999999998877654 0 0 135577788876444333332322
Q ss_pred --eEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecCCCeEE--eecCCc-eEEEec
Q 005559 239 --RLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVL--IPECDG-VRILSN 313 (691)
Q Consensus 239 --~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d~~~~l--~~E~DG-vRIit~ 313 (691)
.||+++..-.+.+..++.. +| ..++.-+-|..+.| .+..|| +-|+..
T Consensus 268 gteVWv~D~~t~krv~Ri~l~---------------------------~~-~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIPLE---------------------------HP-IDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEE---------------------------EE-ESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred ceEEEEEECCCCeEEEEEeCC---------------------------Cc-cceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 3455444433333332211 00 11333333444443 345566 888888
Q ss_pred Ccceeeeccch
Q 005559 314 SSMEFLQRVPA 324 (691)
Q Consensus 314 ~~~efL~~Vp~ 324 (691)
.+.++++++++
T Consensus 320 ~tGk~~~~~~~ 330 (342)
T PF06433_consen 320 ATGKLVRSIEQ 330 (342)
T ss_dssp TT--EEEEE--
T ss_pred cCCcEEeehhc
Confidence 88888888764
No 361
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.85 E-value=19 Score=39.89 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=52.2
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC---ceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEE
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG---VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYR 112 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG---~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~l 112 (691)
..+.+||+...||+-| .+++|.+++..| +++-++....-...|.++.|+++-++..+...| +-+
T Consensus 70 ~SIkFSlDnkilAVQR------------~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~ 136 (657)
T KOG2377|consen 70 KSIKFSLDNKILAVQR------------TSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEF 136 (657)
T ss_pred eEEEeccCcceEEEEe------------cCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEE
Confidence 3677888888888887 579999999855 344344433211469999999999999999999 788
Q ss_pred EeCCCC
Q 005559 113 YNIHAE 118 (691)
Q Consensus 113 y~~~G~ 118 (691)
|....+
T Consensus 137 y~v~pe 142 (657)
T KOG2377|consen 137 YQVLPE 142 (657)
T ss_pred EEEchh
Confidence 866544
No 362
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=77.40 E-value=30 Score=38.59 Aligned_cols=156 Identities=19% Similarity=0.095 Sum_probs=86.0
Q ss_pred eeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeC-Cc-eEEEecC-
Q 005559 77 LISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWG-NG-VVCVTEA- 151 (691)
Q Consensus 77 ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~-~G-~vllt~~- 151 (691)
+...+..|. |-|-.+.|...|. |++.++|-+|.+|||. |+..--..++| ...|..++|-| .| ..+++.+
T Consensus 134 l~~kL~~H~--GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH----~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 134 LQKKLNKHK--GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGH----CNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred hhhcccCCC--CccceeeecccCceeeccCccceEEeehhhccCccccccccc----ccchhhhhccCCCCCcCceeccc
Confidence 444556666 8899999999988 5689999999999995 43322123344 35677888865 23 3344432
Q ss_pred CeEEEEecCC-Cc---eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc--------cccCC--
Q 005559 152 NRYFCMADFA-TM---KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--------KVDDT-- 217 (691)
Q Consensus 152 ~~~~~v~n~~-~~---~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~--------~~~~~-- 217 (691)
...+.+..+. .. ....+.. ..+..+..++.| + +.......+.|+.++.+|..... ..+..
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~--h~g~vhklav~p--~--sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAP--HEGPVHKLAVEP--D--SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred cCceeeeeeccccceecceeccc--ccCccceeeecC--C--CCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 2222222211 01 1122221 002234445543 2 23344455557777877765222 11222
Q ss_pred -CeeEEEECCCCC-EEEEEeeCCeEEEEe
Q 005559 218 -LSQKMAVSPNGN-FVACFTHDGRLVVNN 244 (691)
Q Consensus 218 -~i~~Ia~SpnG~-~IAl~t~dg~i~I~s 244 (691)
....|++.|-.. ..|.+..+....|++
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD 310 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYD 310 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhc
Confidence 356788888765 677777766555553
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=76.49 E-value=8.4 Score=44.12 Aligned_cols=82 Identities=9% Similarity=0.110 Sum_probs=51.7
Q ss_pred cCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCee-EEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCC
Q 005559 187 YTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQ-KMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALP 261 (691)
Q Consensus 187 ~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~-~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~ 261 (691)
++|.-..+++....|.|.+-..+-.. +.++.+++ ..++-|||++||.+-.||+|.+.+..-+..+..+.......
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~ 107 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETD 107 (665)
T ss_pred EcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccc
Confidence 44566666666666665554444221 33556666 89999999999999999999998765444443322111223
Q ss_pred CCeEEEe
Q 005559 262 PEQIAWC 268 (691)
Q Consensus 262 p~q~~WC 268 (691)
...+-|-
T Consensus 108 is~~~w~ 114 (665)
T KOG4640|consen 108 ISKGIWD 114 (665)
T ss_pred hheeecc
Confidence 4456663
No 364
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=76.39 E-value=76 Score=34.36 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=60.1
Q ss_pred CEEEEcCCCC-eEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCE---EEEEec-CC-CeE-EEEEeC
Q 005559 36 NKVACAPFGG-PIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRL---IGMSWS-ED-QTL-ICVVQD 107 (691)
Q Consensus 36 ~~vA~sp~GG-~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~I---v~~~fs-~d-e~L-v~v~~D 107 (691)
..+.-+++|. .++...++.+ ..-.+.+++. .|..-..+.-.. .+.| -.+.|. ++ +.+ .+...|
T Consensus 187 ~~v~W~~d~~~l~~~~~nR~q--------~~~~l~~~d~~tg~~~~~~~e~~-~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 187 TRVGWSPDGKRLWVQWLNRDQ--------NRLDLVLCDASTGETRVVLEETS-DGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp EEEEEEETTEEEEEEEEETTS--------TEEEEEEEEECTTTCEEEEEEES-SSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccceecCCCcEEEEEEcccCC--------CEEEEEEEECCCCceeEEEEecC-CcceeeecccccccCCCCEEEEEEEcC
Confidence 3566678888 4444443321 3445555665 343221122111 1332 244454 54 444 466688
Q ss_pred CeEEEE--eCCCCeeccccCCCccccccCeEEEEEeC--CceEEEecCC------eEEEEecCC-CceEEEcC
Q 005559 108 GTVYRY--NIHAELIEPNASMGKECFEENVVECVFWG--NGVVCVTEAN------RYFCMADFA-TMKVCELA 169 (691)
Q Consensus 108 GtV~ly--~~~G~~~~~sl~~~~~~~~~~V~~~~~~~--~G~vllt~~~------~~~~v~n~~-~~~~~~l~ 169 (691)
|--.+| +..|...+ .+..+ +-.|.++..|+ ++.+..+++. ++|.+ +++ +..+.+|+
T Consensus 258 G~~hly~~~~~~~~~~-~lT~G----~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v-~~~~~~~~~~LT 324 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPR-QLTSG----DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV-SLDSGGEPKCLT 324 (353)
T ss_dssp SSEEEEEEETTSSEEE-ESS-S----SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE-ETTETTEEEESS
T ss_pred CCcEEEEEccccccee-ccccC----ceeecccceEcCCCCEEEEEecCCCCCceEEEEE-EeCCCCCeEecc
Confidence 987777 67776655 55544 45576655553 5666666554 45555 333 44455554
No 365
>PRK13684 Ycf48-like protein; Provisional
Probab=76.19 E-value=1.2e+02 Score=32.76 Aligned_cols=63 Identities=16% Similarity=0.186 Sum_probs=38.3
Q ss_pred CCEEEEEecCCCeEEEEEeCCeEEEEeC-CCCe-eccccCCCccccccCeEEEEEeCCceEEEecCC
Q 005559 88 GRLIGMSWSEDQTLICVVQDGTVYRYNI-HAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEAN 152 (691)
Q Consensus 88 ~~Iv~~~fs~de~Lv~v~~DGtV~ly~~-~G~~-~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~ 152 (691)
..+.++.+++++.++++...|.+++=+- .|+- .....+.... ...+.++.+.++|.+++.+..
T Consensus 215 ~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~ 279 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITN--GYGYLDLAYRTPGEIWAGGGN 279 (334)
T ss_pred ccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCcccc--ccceeeEEEcCCCCEEEEcCC
Confidence 4699999999999999999998764333 4432 2212211100 234666667777666655443
No 366
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.85 E-value=21 Score=39.65 Aligned_cols=64 Identities=8% Similarity=0.055 Sum_probs=45.0
Q ss_pred ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeecc----CCCCCCCCeEEEecCceEEEEEc
Q 005559 214 VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDES----CESALPPEQIAWCGMDSVLLYWN 278 (691)
Q Consensus 214 ~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d----~~~~~~p~q~~WCG~davvl~~~ 278 (691)
...|+|.+|.||||.|.||.=-.+.++...+--.++...++. .+ ......+.|..+--+++.-+
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k-~~~IlGF~W~~s~e~A~i~~ 131 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK-NANILGFCWTSSTEIAFITD 131 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC-cceeEEEEEecCeeEEEEec
Confidence 467899999999999999998888999877654444444433 22 22356888987755555444
No 367
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.22 E-value=23 Score=35.85 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=46.0
Q ss_pred eEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCC-Ceecc--c----cCCCc---cccccCeEEEEEeCCceEE
Q 005559 78 ISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHA-ELIEP--N----ASMGK---ECFEENVVECVFWGNGVVC 147 (691)
Q Consensus 78 l~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G-~~~~~--s----l~~~~---~~~~~~V~~~~~~~~G~vl 147 (691)
+..|... .+++.+.-. +.-|++++.+|.+++||+.. +..-. + +.... ......|..+.+..+|.-+
T Consensus 6 ~P~i~Lg---s~~~~l~~~-~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~Pi 81 (219)
T PF07569_consen 6 LPPIVLG---SPVSFLECN-GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPI 81 (219)
T ss_pred cCcEecC---CceEEEEeC-CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEE
Confidence 3555543 356767644 55589999999999999963 32110 1 11100 0124678999999999887
Q ss_pred EecC-CeEE
Q 005559 148 VTEA-NRYF 155 (691)
Q Consensus 148 lt~~-~~~~ 155 (691)
++.+ ++.|
T Consensus 82 V~lsng~~y 90 (219)
T PF07569_consen 82 VTLSNGDSY 90 (219)
T ss_pred EEEeCCCEE
Confidence 7755 4443
No 368
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=75.10 E-value=12 Score=47.96 Aligned_cols=207 Identities=14% Similarity=0.101 Sum_probs=118.3
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeE-EEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEe
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~L-v~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~ 141 (691)
.+.+..-|+..|.-...+. +- ..+..|.=-|-... ++.++||.|++|-+ .|......-..+ +..|..++|.
T Consensus 2188 ~~~~~~tq~~~~~~~~~k~-~v--~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g----~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2188 LPWLGSTQTSRGASVMIKH-PV--ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG----NSRVTRSRFN 2260 (2439)
T ss_pred CCccccceecccceeEeec-cc--CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC----cchhhhhhhc
Confidence 4555666666655433222 22 46777766666554 78999999999977 454433122222 3567788887
Q ss_pred CCce--EEEecCCeEEEEecCCCceEEEcCCCCcCCC--CceEEEecCCcCCCCCeEEEEEe---CCeEEEEecCCcc--
Q 005559 142 GNGV--VCVTEANRYFCMADFATMKVCELARPEVEEL--PHCVAVIEPKYTMTGSVEVLIGT---DAGILMLDEDGVQ-- 212 (691)
Q Consensus 142 ~~G~--vllt~~~~~~~v~n~~~~~~~~l~~~~l~~~--~~~w~vi~~~~S~d~~~~vl~s~---d~ti~l~d~~~~~-- 212 (691)
.+|- .+..++|.+ .+|... |+++.--.. +. -+....| ++..+..+. ++.+-+||..-..
T Consensus 2261 ~qGnk~~i~d~dg~l-~l~q~~-pk~~~s~qc---hnk~~~Df~Fi-------~s~~~tag~s~d~~n~~lwDtl~~~~~ 2328 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDL-SLWQAS-PKPYTSWQC---HNKALSDFRFI-------GSLLATAGRSSDNRNVCLWDTLLPPMN 2328 (2439)
T ss_pred ccCCceeeeccCCce-eecccC-Ccceecccc---CCccccceeee-------ehhhhccccCCCCCcccchhcccCccc
Confidence 6553 344444432 233322 333211000 11 1222222 122333322 4567888866322
Q ss_pred ----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCC
Q 005559 213 ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQA 288 (691)
Q Consensus 213 ----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~ 288 (691)
.-|.+..+.+++-|+-+.+-+++.+|.+.+|+.-=.+....|.. |+
T Consensus 2329 s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------------------~~---------- 2378 (2439)
T KOG1064|consen 2329 SLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------------------LD---------- 2378 (2439)
T ss_pred ceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------------------hh----------
Confidence 45888999999999999999999999999997642222222210 11
Q ss_pred CceEeecCCCeEEeecCCc-eEEEecCcceeeeccchhh
Q 005559 289 EPVQYFYDEPLVLIPECDG-VRILSNSSMEFLQRVPAST 326 (691)
Q Consensus 289 ~~v~f~~d~~~~l~~E~DG-vRIit~~~~efL~~Vp~~~ 326 (691)
....++.+..-| +|||.-+...+|...|...
T Consensus 2379 -------~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2379 -------TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred -------hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 012223333456 8899988888888887654
No 369
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=74.82 E-value=1.5e+02 Score=37.46 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=18.8
Q ss_pred eecCCc-eEEEecCcceeeeccchhh
Q 005559 302 IPECDG-VRILSNSSMEFLQRVPAST 326 (691)
Q Consensus 302 ~~E~DG-vRIit~~~~efL~~Vp~~~ 326 (691)
....|| +|+++...++.+-.+..++
T Consensus 887 ~v~~dgs~~~~~p~G~~~~~~~ephi 912 (1899)
T KOG4659|consen 887 IVLRDGSLRLISPLGMSTLYDKEPHI 912 (1899)
T ss_pred EEccCCcEEEEccCCcceeeccCCcc
Confidence 445677 9999999888887766654
No 370
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=74.77 E-value=10 Score=38.49 Aligned_cols=88 Identities=7% Similarity=0.053 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEE----eCCCCeeccccCCCccccccCeEEEE
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY----NIHAELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly----~~~G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
..-+|.||+.+|+++.++.......-.+.|.|..-..=-....+|.|.+- +-.|+....+... ...|..+.
T Consensus 122 ~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a~~~~G~~~~~~~~~-----~g~V~~V~ 196 (221)
T PRK12634 122 GFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQTDTAGSKSKLSTYV-----QAPVDSVT 196 (221)
T ss_pred CeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEEEeCCCcEEeeeeeE-----EEEEEEEE
Confidence 35689999999999999987432234788999652111122355654433 3466643311111 24466776
Q ss_pred EeCCceEEEecCCeEEE
Q 005559 140 FWGNGVVCVTEANRYFC 156 (691)
Q Consensus 140 ~~~~G~vllt~~~~~~~ 156 (691)
+-++|..+....+..+.
T Consensus 197 ~~~~g~~L~l~g~~~v~ 213 (221)
T PRK12634 197 IGSDGLYLNLTGLGTSP 213 (221)
T ss_pred ecCCceEEEecCCcEEe
Confidence 65667666555444343
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=74.53 E-value=17 Score=43.72 Aligned_cols=86 Identities=9% Similarity=0.079 Sum_probs=60.0
Q ss_pred CCCeEEEEcC--CCceeEEEEecC--CCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEE
Q 005559 64 ALRKLRIFNS--AGVLISETVWKN--PGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 64 ~~~~I~Iys~--sG~ll~si~~~~--~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
.++.+.-|++ +|+.+-.-..++ .+...-+++=|.+|.+++++.+|.||+||--|.--++.|+.- -..|+.+-
T Consensus 550 s~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~l----G~pI~~iD 625 (794)
T PF08553_consen 550 SDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGL----GDPIIGID 625 (794)
T ss_pred CCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCC----CCCeeEEE
Confidence 4677777776 564332111111 124688888899999999999999999998887655566542 25699999
Q ss_pred EeCCceEEEecCCe
Q 005559 140 FWGNGVVCVTEANR 153 (691)
Q Consensus 140 ~~~~G~vllt~~~~ 153 (691)
++.+|.-++..-..
T Consensus 626 vt~DGkwilaTc~t 639 (794)
T PF08553_consen 626 VTADGKWILATCKT 639 (794)
T ss_pred ecCCCcEEEEeecc
Confidence 99999766554443
No 372
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=74.29 E-value=1.3e+02 Score=32.39 Aligned_cols=220 Identities=15% Similarity=0.166 Sum_probs=116.4
Q ss_pred CcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC--CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEe
Q 005559 30 HIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS--AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ 106 (691)
Q Consensus 30 ~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~--sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~ 106 (691)
..|.-+..+-....-|.|-+. .+.+++||=. +|+--.+|.... +.+...+.+.++-. |+|.+.
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s-------------~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ 88 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVS-------------EDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQD 88 (404)
T ss_pred chhhhhhheeccCCCCeEEcc-------------ccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEe
Confidence 346666677777777877543 5789999974 788888877443 36899999998755 789999
Q ss_pred CCeEEEEeCCCCeeccc----cCCCccccccCeEEEEEeC-CceEEEecCCeEEEEecCC-CceEEEcCCCCcCCCCceE
Q 005559 107 DGTVYRYNIHAELIEPN----ASMGKECFEENVVECVFWG-NGVVCVTEANRYFCMADFA-TMKVCELARPEVEELPHCV 180 (691)
Q Consensus 107 DGtV~ly~~~G~~~~~s----l~~~~~~~~~~V~~~~~~~-~G~vllt~~~~~~~v~n~~-~~~~~~l~~~~l~~~~~~w 180 (691)
+|+|.-+...-.+.+-+ +..+ +..|...-|.- .-.++.++.+.-+...-.+ +.+ +.. -.-.+|
T Consensus 89 ngtvtefs~sedfnkm~~~r~~~~h----~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~---lg~----Y~~~~~ 157 (404)
T KOG1409|consen 89 NGTVTEFALSEDFNKMTFLKDYLAH----QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR---LGG----YNFETP 157 (404)
T ss_pred cceEEEEEhhhhhhhcchhhhhhhh----hcceeeEEecCCceeEEEeccccceEEEeeccCCc---ccc----eEeecc
Confidence 99999997754443322 2223 33444433332 3333333333222111111 000 000 001222
Q ss_pred EEecCCcCCCCCeEEEEEe-CC--eEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCCCc-e
Q 005559 181 AVIEPKYTMTGSVEVLIGT-DA--GILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP-V 251 (691)
Q Consensus 181 ~vi~~~~S~d~~~~vl~s~-d~--ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~-l 251 (691)
+. +++|... .+..+. .+ +...+..+++. ..+.+++...++-|..+.+-+...|..+.+|+....+- .
T Consensus 158 ~t-~~~~d~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~ 233 (404)
T KOG1409|consen 158 AS-ALQFDAL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA 233 (404)
T ss_pred CC-CCceeeE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee
Confidence 21 1111111 111111 22 23333333333 45677888888888877777777777777777643222 1
Q ss_pred eeccCCC--------CCCCCeEEEecCceEEEEEc
Q 005559 252 IDESCES--------ALPPEQIAWCGMDSVLLYWN 278 (691)
Q Consensus 252 ~e~d~~~--------~~~p~q~~WCG~davvl~~~ 278 (691)
.|...+. ....+++.=||.|..+..|+
T Consensus 234 ~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 234 YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 2222110 11224555567777776665
No 373
>PF10493 Rod_C: Rough deal protein C-terminal region; InterPro: IPR019527 Rod, the Rough deal protein (also known as Kinetochore-associated protein 1) displays a dynamic intracellular staining pattern, localising first to kinetochores in pro-metaphase, but moving to kinetochore microtubules at metaphase. Early in anaphase the protein is once again restricted to the kinetochores, where it persists until the end of telophase. This behaviour is in all respects similar to that described for ZW10 [], and indeed the two proteins function together, localisation of each depending upon the other []. These two proteins are found at the kinetochore in complex with a third, Zwilch, in both flies and humans. The C- terminus is the most conserved part of the protein. During pro-metaphase, the ZW10-Rod complex, dynein/dynactin, and Mad2 all accumulate on unattached kinetochores; microtubule capture leads to Mad2 depletion as it is carried off by dynein/dynactin; ZW10-Rod complex accumulation continues, replenishing kinetochore dynein. The continuing recruitment of the ZW10-Rod complex during metaphase may serve to maintain adequate dynein/dynactin complex on kinetochores for assisting chromatid movement during anaphase[]. The ZW10-Rod complex acts as a bridge whose association with Zwint-1 links Mad1 and Mad2, components that are directly responsible for generating the diffusible 'wait anaphase' signal, to a structural, inner kinetochore complex containing Mis12 and KNL-1AF15q14, the last of which has been proved to be essential for kinetochore assembly in Caenorhabditis elegans. Removal of ZW10 or Rod inactivates the mitotic checkpoint [].
Probab=74.24 E-value=56 Score=37.92 Aligned_cols=81 Identities=14% Similarity=0.088 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhccCC---CCCHHHHHHHHHHhCcHHHHHHHHhcCCCCcCcccccccCCchHHHHHHHHHcCCchHHHHH
Q 005559 488 VTLLEILLDKLKLCK---GISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLV 564 (691)
Q Consensus 488 ~~l~~~I~~kl~~~~---~is~a~IA~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl~~~~~~~AL~kA~~S~D~dLi~~v 564 (691)
+.+++.+ ..|..+| ..++..||+...+.+|+.+|.-.|-.=|..+ +-+.-+++=+.+++++-+..=
T Consensus 460 ~~~~~~l-~~l~~CPv~~~ldl~~ia~~~~~~~~~~~Al~~Ll~~~~~~----------~~~~~i~~~~~~~~~~~~~~q 528 (551)
T PF10493_consen 460 EQCCKSL-VLLLKCPVLHDLDLIGIAKQCIQLKLPAFALACLLLFPQSE----------KRKQQIQKLLASCNPETLLQQ 528 (551)
T ss_pred HHHHHHH-HHHHcCCccccccHHHHHHHHHHcCCHHHHHHHHhhCccch----------hHHHHHHHHHHcCCHHHHHHH
Confidence 3455555 4556777 5799999999999999999843332223322 334556777888888888887
Q ss_pred HHHHHhhCChhhHHH
Q 005559 565 IFHIWQKRPALEFFG 579 (691)
Q Consensus 565 ll~l~~~~~~~~f~~ 579 (691)
+.++.++--.+.|..
T Consensus 529 ~~~~~~~g~~~~~~~ 543 (551)
T PF10493_consen 529 IEELMNTGELAGFAS 543 (551)
T ss_pred HHHHHhcCcHHHHHH
Confidence 878777644444443
No 374
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=73.56 E-value=1.3e+02 Score=31.96 Aligned_cols=130 Identities=13% Similarity=0.182 Sum_probs=70.4
Q ss_pred CeEEEEcCCC--------ceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCC--eeccccCCCccccccCe
Q 005559 66 RKLRIFNSAG--------VLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAE--LIEPNASMGKECFEENV 135 (691)
Q Consensus 66 ~~I~Iys~sG--------~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~--~~~~sl~~~~~~~~~~V 135 (691)
+.|.+|+..- +++.+...+ |.|.++.=- ++. ++++.++++.+|++..+ +....+-.. ...|
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~---g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~----~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK---GPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDS----PFYI 132 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES---S-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-B----SSSE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec---CcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecc----eEEE
Confidence 8899999765 334444442 678888665 666 66777899999988543 332121111 2357
Q ss_pred EEEEEeCCceEEEecCCeEEEE-ecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecC
Q 005559 136 VECVFWGNGVVCVTEANRYFCM-ADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDED 209 (691)
Q Consensus 136 ~~~~~~~~G~vllt~~~~~~~v-~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~ 209 (691)
.++...++=+++...-..++.+ ++-+..++..+.. .....|.. .-.|-.++...+..+.++.++++..+
T Consensus 133 ~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~----d~~~~~v~-~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 133 TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVAR----DYQPRWVT-AAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEE----ESS-BEEE-EEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEe----cCCCccEE-EEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 7777777755555444444433 2323333444432 11122211 11233355677777778988887766
No 375
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=73.30 E-value=1.2e+02 Score=31.72 Aligned_cols=145 Identities=14% Similarity=0.193 Sum_probs=74.2
Q ss_pred ceeEEEEecCCCCCEEEEEecCCCeEE-EEEeCC--eEEEEeCC-CCeec-cccCCCccccccCeEEEEEeCCceEEEec
Q 005559 76 VLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDG--TVYRYNIH-AELIE-PNASMGKECFEENVVECVFWGNGVVCVTE 150 (691)
Q Consensus 76 ~ll~si~~~~~~~~Iv~~~fs~de~Lv-~v~~DG--tV~ly~~~-G~~~~-~sl~~~~~~~~~~V~~~~~~~~G~vllt~ 150 (691)
+.+.+.+++.. .-.-++.|.+++.|. +-+.-| .++.||+. |+..+ ..++.. ..-. .+.++++-+..+|=
T Consensus 34 ~vv~~ypHd~~-aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--~FgE---Git~~~d~l~qLTW 107 (264)
T PF05096_consen 34 EVVETYPHDPT-AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--YFGE---GITILGDKLYQLTW 107 (264)
T ss_dssp EEEEEEE--TT--EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EE---EEEEETTEEEEEES
T ss_pred EEEEECCCCCc-ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--ccce---eEEEECCEEEEEEe
Confidence 67889997762 358888897789985 666666 58888885 66643 234321 0011 23445666666665
Q ss_pred CCeEEEEecCCCc-eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcccccCCCeeEEEECCCCC
Q 005559 151 ANRYFCMADFATM-KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGN 229 (691)
Q Consensus 151 ~~~~~~v~n~~~~-~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~~~~~~~i~~Ia~SpnG~ 229 (691)
..+...+.+.+.. ...+++- ....|-+- .||+.++.-+-.++++.+|...-. ....|.+--+|+
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y-----~~EGWGLt-----~dg~~Li~SDGS~~L~~~dP~~f~-----~~~~i~V~~~g~ 172 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPY-----PGEGWGLT-----SDGKRLIMSDGSSRLYFLDPETFK-----EVRTIQVTDNGR 172 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE------SSS--EEE-----ECSSCEEEE-SSSEEEEE-TTT-S-----EEEEEE-EETTE
T ss_pred cCCeEEEEccccceEEEEEec-----CCcceEEE-----cCCCEEEEECCccceEEECCcccc-----eEEEEEEEECCE
Confidence 5444444444322 2222321 13678763 367765555556788888876422 233455555555
Q ss_pred EEEEEee----CCeEE
Q 005559 230 FVACFTH----DGRLV 241 (691)
Q Consensus 230 ~IAl~t~----dg~i~ 241 (691)
-+-..++ +|.||
T Consensus 173 pv~~LNELE~i~G~Iy 188 (264)
T PF05096_consen 173 PVSNLNELEYINGKIY 188 (264)
T ss_dssp E---EEEEEEETTEEE
T ss_pred ECCCcEeEEEEcCEEE
Confidence 5544444 55555
No 376
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=72.41 E-value=87 Score=32.50 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=67.7
Q ss_pred EEEEecCCcc-----cccCCCeeEEEECCCCC-EEEEEeeCCeEEEEecCC-----------CCceeeccCCCCCCCCeE
Q 005559 203 ILMLDEDGVQ-----KVDDTLSQKMAVSPNGN-FVACFTHDGRLVVNNTNF-----------SSPVIDESCESALPPEQI 265 (691)
Q Consensus 203 i~l~d~~~~~-----~~~~~~i~~Ia~SpnG~-~IAl~t~dg~i~I~ssd~-----------~~~l~e~d~~~~~~p~q~ 265 (691)
.|.|+.+-.. ......++.++-.|.-+ .+++++++|.+-+|.-.- +..+.|..-+ +..|..+
T Consensus 161 ~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FH-pk~p~~L 239 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFH-PKNPEHL 239 (319)
T ss_pred eeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheecc-CCCchhe
Confidence 5666665332 23344588899999876 467788888777765321 1223344444 5578889
Q ss_pred EEecCceEEEEEcCe--EEEEcCCCCceEeecCCCeEE-eecCCceE
Q 005559 266 AWCGMDSVLLYWNDM--LVMVAPQAEPVQYFYDEPLVL-IPECDGVR 309 (691)
Q Consensus 266 ~WCG~davvl~~~~~--l~liGp~~~~v~f~~d~~~~l-~~E~DGvR 309 (691)
-=|.+|.-+..|+.. ..=+|++.+-++-|..++++= .-|++|++
T Consensus 240 ft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll 286 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLL 286 (319)
T ss_pred eEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccc
Confidence 899999999999854 444677776666666655442 24555543
No 377
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=72.15 E-value=12 Score=38.32 Aligned_cols=87 Identities=9% Similarity=0.127 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEE----eCCCCeecc-ccCCCccccccCeEEE
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY----NIHAELIEP-NASMGKECFEENVVEC 138 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly----~~~G~~~~~-sl~~~~~~~~~~V~~~ 138 (691)
..-+|.||+.+|+++.++.......-.+.|.|.....--....+|.|.+- +-.|+.... .+. ...|..+
T Consensus 129 ~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~~~~G~~~~~~~~~------~~~V~~V 202 (230)
T PRK12633 129 TKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSASDADAKPVKAEALT------YGQVKSV 202 (230)
T ss_pred cEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEEeCCCcEEeeeeeE------EEEEEEE
Confidence 46789999999999999987432234688999753221223356655433 345664321 111 2347777
Q ss_pred EEeCCceEEEecCCeEEE
Q 005559 139 VFWGNGVVCVTEANRYFC 156 (691)
Q Consensus 139 ~~~~~G~vllt~~~~~~~ 156 (691)
.+-++|..+....+..+.
T Consensus 203 ~~~~~~~~l~l~~~~~v~ 220 (230)
T PRK12633 203 AYSTNGLRLDLGLAGQIS 220 (230)
T ss_pred EecCCceEEEEcCCcEEe
Confidence 766667666555444333
No 378
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=71.80 E-value=10 Score=48.47 Aligned_cols=167 Identities=13% Similarity=0.116 Sum_probs=100.9
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEE
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVF 140 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~ 140 (691)
+.++.+++|-. .|+.+-..+--.. .++..+.|+.+|. .-++-.||.+-+|...-+... +..-| +-...|.+|
T Consensus 2227 s~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~-s~qch----nk~~~Df~F 2300 (2439)
T KOG1064|consen 2227 SQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYT-SWQCH----NKALSDFRF 2300 (2439)
T ss_pred CCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccCCccee-ccccC----Cccccceee
Confidence 46888998874 6777766554333 5799999999877 568999999999977632221 33333 445667777
Q ss_pred eCCceEEEecC--CeEEEEecCC-CceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcccccCC
Q 005559 141 WGNGVVCVTEA--NRYFCMADFA-TMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDT 217 (691)
Q Consensus 141 ~~~G~vllt~~--~~~~~v~n~~-~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~~~~~~ 217 (691)
-+.|++-.-.+ ++-..+|+-- .+..+.+..-.. +..+|.+ |-|..++.+..+.+|.|++||....+..|.
T Consensus 2301 i~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~-~gaT~l~-----~~P~~qllisggr~G~v~l~D~rqrql~h~- 2373 (2439)
T KOG1064|consen 2301 IGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHD-GGATVLA-----YAPKHQLLISGGRKGEVCLFDIRQRQLRHT- 2373 (2439)
T ss_pred eehhhhccccCCCCCcccchhcccCcccceeeeecC-CCceEEE-----EcCcceEEEecCCcCcEEEeehHHHHHHHH-
Confidence 77554433222 2333333311 122222210000 1134433 446788889999999999999986651111
Q ss_pred CeeEEEECCCCCEEEEEeeCCeEEEEecC
Q 005559 218 LSQKMAVSPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 218 ~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd 246 (691)
|.. +- --.++.+++..|+|+||+-+
T Consensus 2374 -~~~--~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2374 -FQA--LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred -hhh--hh-hhheeeccCcccceEEEEcc
Confidence 111 22 33578888889999999854
No 379
>PRK13684 Ycf48-like protein; Provisional
Probab=70.87 E-value=1.6e+02 Score=31.80 Aligned_cols=224 Identities=12% Similarity=0.129 Sum_probs=103.8
Q ss_pred CCEEEEEecCCCeEEEEEeCCeEEEEeCCCCe-eccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCCceEE
Q 005559 88 GRLIGMSWSEDQTLICVVQDGTVYRYNIHAEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVC 166 (691)
Q Consensus 88 ~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~-~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~~~~~ 166 (691)
..+.++.|.++++-++|..+|.|..=+=.|+- .+........ ...+.++.+.++...++...+.++.-+| +.+.|
T Consensus 46 ~~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~--~~~l~~v~~~~~~~~~~G~~g~i~~S~D--gG~tW 121 (334)
T PRK13684 46 ANLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEE--NFRLISISFKGDEGWIVGQPSLLLHTTD--GGKNW 121 (334)
T ss_pred CceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCccc--ccceeeeEEcCCcEEEeCCCceEEEECC--CCCCC
Confidence 47999999976777788888865533223432 2211111101 1234455444422223333334444333 12222
Q ss_pred E-cCCC-CcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cccCCCeeEEEECCCCCEEEEEeeCCe
Q 005559 167 E-LARP-EVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGR 239 (691)
Q Consensus 167 ~-l~~~-~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~~~~~i~~Ia~SpnG~~IAl~t~dg~ 239 (691)
+ +..+ .....+.....+ ++.........+.|+.-+-.|.. ....+.+..|.++|+|.+++. +..|.
T Consensus 122 ~~~~~~~~~~~~~~~i~~~------~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~-g~~G~ 194 (334)
T PRK13684 122 TRIPLSEKLPGSPYLITAL------GPGTAEMATNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAV-SSRGN 194 (334)
T ss_pred eEccCCcCCCCCceEEEEE------CCCcceeeeccceEEEECCCCCCceeCcCCCcceEEEEEECCCCeEEEE-eCCce
Confidence 2 1111 011122222221 22223344455556555444544 223567899999999976654 44676
Q ss_pred EEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCe-EEEEc-CCCC-----------------ceEeecCCCeE
Q 005559 240 LVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDM-LVMVA-PQAE-----------------PVQYFYDEPLV 300 (691)
Q Consensus 240 i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~-l~liG-p~~~-----------------~v~f~~d~~~~ 300 (691)
++.-..|-++...............+..+.++..++.=+.. +++.. .+|. .+.|..++..+
T Consensus 195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~ 274 (334)
T PRK13684 195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIW 274 (334)
T ss_pred EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEE
Confidence 66432232333333443334455666666555433321222 22211 1111 12233334444
Q ss_pred EeecCCceEEEecCcceeeeccc
Q 005559 301 LIPECDGVRILSNSSMEFLQRVP 323 (691)
Q Consensus 301 l~~E~DGvRIit~~~~efL~~Vp 323 (691)
++. .+|..+.|.+..+=.+.++
T Consensus 275 ~~G-~~G~v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 275 AGG-GNGTLLVSKDGGKTWEKDP 296 (334)
T ss_pred EEc-CCCeEEEeCCCCCCCeECC
Confidence 444 4787778887666555554
No 380
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=70.20 E-value=27 Score=33.87 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=23.9
Q ss_pred CEEEEEecCCC------e-EEEEEeCCeEEEEeCCC
Q 005559 89 RLIGMSWSEDQ------T-LICVVQDGTVYRYNIHA 117 (691)
Q Consensus 89 ~Iv~~~fs~de------~-Lv~v~~DGtV~ly~~~G 117 (691)
.++++.|||-| . |.+++.+|.+.+|...+
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 79999999933 2 57999999999997654
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.97 E-value=12 Score=42.28 Aligned_cols=68 Identities=10% Similarity=0.021 Sum_probs=54.7
Q ss_pred CCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEE-EEecCCCCCEEEEEecCCCeEEEEEeCCeEEEE
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE-TVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY 113 (691)
Q Consensus 35 ~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~s-i~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly 113 (691)
++..++.+-.|.||+.+ .++.|++|+..|..-.| ++.-. ..|..+.-|.||+.++++-+..+.+.
T Consensus 432 nFsc~aTT~sG~IvvgS------------~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvtadGKwil~Tc~tyLlLi 497 (644)
T KOG2395|consen 432 NFSCFATTESGYIVVGS------------LKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTADGKWILATCKTYLLLI 497 (644)
T ss_pred ccceeeecCCceEEEee------------cCCcEEeehhhhhhhhhcccccC--CceeeEEeeccCcEEEEecccEEEEE
Confidence 34566777788999986 68999999998876655 55543 78999999999999999988888877
Q ss_pred eCC
Q 005559 114 NIH 116 (691)
Q Consensus 114 ~~~ 116 (691)
+..
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 664
No 382
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.80 E-value=69 Score=39.09 Aligned_cols=148 Identities=16% Similarity=0.196 Sum_probs=87.3
Q ss_pred HHHHHHhCcHHHHHHHHhcCCCCcCcccccccCCchHHHHHHHHHcCCchHHHHHHHHHHhhCChhhHHHHHhcCh--hh
Q 005559 510 AAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRP--LA 587 (691)
Q Consensus 510 A~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl~~~~~~~AL~kA~~S~D~dLi~~vll~l~~~~~~~~f~~~l~~~~--~a 587 (691)
-+.+|...|..+ +..|.+.|+++.|..-|=+=.|.+-....+-.+.++-.+.++....+..| -+
T Consensus 767 leeef~~~Rrdw--------------lq~L~~vg~~e~Ai~iAEKY~DfqsLV~lcdqld~kdrLq~y~~~~~e~~~eFs 832 (1128)
T KOG4121|consen 767 LEEEFDDNRRDW--------------LQVLCKVGQYEQAIQIAEKYKDFQSLVQLCDQLDQKDRLQDYETFFNEYPKEFS 832 (1128)
T ss_pred HHHHHHHHHHHH--------------HHHHHhcchHHHHHHHHHHhhhHHHHHHHHHhhCchhHHHHHHHHHHhhhHHHH
Confidence 345666666665 67789999999999999999999887777777776655555555555555 34
Q ss_pred HHHHHHHHHh-----------cCHHHHHHHHH-------------hcCChhHHHHHHHHHHHhcCCCCCCCCCCCCccch
Q 005559 588 CDLFTVYARC-----------YKHEFLKDFFL-------------STGQLQEVAFLLWKESWELGKNPMASNGSALHGPR 643 (691)
Q Consensus 588 ~~l~~~y~~~-----------~~~~~L~~~y~-------------q~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 643 (691)
.=+|..|.+. +++..|..||. +.++|..+++.+++-+..+++. ...|
T Consensus 833 ~~lf~y~ve~~k~~eLl~~f~~~~s~L~qFf~~~d~~~lsWi~ei~nGdy~rAs~~L~~la~~e~k~---------vakK 903 (1128)
T KOG4121|consen 833 FFLFEYLVEHGKLGELLFRFPQQHSVLIQFFQERDYGHLSWIQEILNGDYERASNTLLNLAVDEEKK---------VAKK 903 (1128)
T ss_pred HHHHHHHHhhchHHHHHhcchhhHHHHHHHHhhccccccHHHHHHhcCcHHHHHHHHHHhcchHHHH---------HhhH
Confidence 4455555431 34555666662 4455666666666655433222 2244
Q ss_pred HHHHHHHHhhhhhc---cchhH--HHHHHHHHHHHHH-HHHHHH
Q 005559 644 IKRIEKAHSLFSET---KEHTF--ESKAAEEHAKLLS-VIQEAN 681 (691)
Q Consensus 644 ~~~L~~a~~~~~~~---~~~~f--~~~~~~~~~~Ll~-~Q~~L~ 681 (691)
.+.|.- +|+|.=+ +++.. ..+-+..++.++. +|.+++
T Consensus 904 ~s~LsL-aKL~s~a~~~ee~l~~~~Iqki~a~~~~Vd~~q~q~~ 946 (1128)
T KOG4121|consen 904 ESHLSL-AKLASLAVEIEENLLILTIQKIQANLDLVDAEQSQGN 946 (1128)
T ss_pred HHHhhH-HHHHHHhhhhhhhHHHHHHHHHHhcccHHHHHHhhcc
Confidence 444443 3444332 12111 1111333466666 777776
No 383
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.77 E-value=35 Score=34.59 Aligned_cols=59 Identities=10% Similarity=0.141 Sum_probs=42.2
Q ss_pred CCCCeEEEEEeCCeEEEEecCCcc----c---------------ccCCCeeEEEECCCCCEEEEEeeCCeEEEEecCCC
Q 005559 189 MTGSVEVLIGTDAGILMLDEDGVQ----K---------------VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFS 248 (691)
Q Consensus 189 ~d~~~~vl~s~d~ti~l~d~~~~~----~---------------~~~~~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~~ 248 (691)
.+++..+.+..+|.+|+||..... . .....|..+.++.+|.-|+.++ +|..+.|+.+++
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 378888888899999999988554 1 1334577778888887777665 466777766644
No 384
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=67.04 E-value=1.8e+02 Score=31.06 Aligned_cols=194 Identities=15% Similarity=0.114 Sum_probs=101.5
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeC-CCCeeccccCCCccccccCeEEEEEeC
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI-HAELIEPNASMGKECFEENVVECVFWG 142 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~-~G~~~~~sl~~~~~~~~~~V~~~~~~~ 142 (691)
..+.|+-|+........+... +.+.+.....++.++++.+.| +.++++ .|.................-.++++-+
T Consensus 45 ~~~~i~r~~~~~g~~~~~~~p---~~~~~~~~~d~~g~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p 120 (307)
T COG3386 45 LGGRIHRLDPETGKKRVFPSP---GGFSSGALIDAGGRLIACEHG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP 120 (307)
T ss_pred CCCeEEEecCCcCceEEEECC---CCcccceeecCCCeEEEEccc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcC
Confidence 467788888864444444433 355666666677778888888 455665 344422111111111234456888888
Q ss_pred CceEEEecCC-------------eEEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEe-CCeEEEEec
Q 005559 143 NGVVCVTEAN-------------RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGT-DAGILMLDE 208 (691)
Q Consensus 143 ~G~vllt~~~-------------~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~-d~ti~l~d~ 208 (691)
+|-+.++... .+|.+.- .+...+.+.+ .+ ..|...+ ||||+++..++.. .+.|+.++.
T Consensus 121 dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-~~-~~~NGla-----~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 121 DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-DL-TIPNGLA-----FSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-cE-EecCceE-----ECCCCCEEEEEeCCCCeEEEEec
Confidence 8877666444 2555542 1222222221 01 1133333 6789987666666 578888877
Q ss_pred CCcc------------cccCCCeeEEEECCCCCEEEEEeeCC-eEEEEecCCCCceeeccCCCCCCCCeEEEecCc
Q 005559 209 DGVQ------------KVDDTLSQKMAVSPNGNFVACFTHDG-RLVVNNTNFSSPVIDESCESALPPEQIAWCGMD 271 (691)
Q Consensus 209 ~~~~------------~~~~~~i~~Ia~SpnG~~IAl~t~dg-~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~d 271 (691)
+... ....|.--.+++-.+|.+-+++...| .|.+++.| ++.+.++..-. ..|...++=|.+
T Consensus 193 d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~ 266 (307)
T COG3386 193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFGGPD 266 (307)
T ss_pred CcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-CCCccceEeCCC
Confidence 6211 11223334455555555443333332 66666666 66666655321 345555555543
No 385
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=63.69 E-value=54 Score=33.93 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=45.1
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCC-------CCCEEEEEecCCCeEEEEEeCC
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNP-------GGRLIGMSWSEDQTLICVVQDG 108 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~-------~~~Iv~~~fs~de~Lv~v~~DG 108 (691)
..+++-|..|-+-+.+++ .+.|-+++.+|++++.+..... ....-+|.|.++|.|.+|++-.
T Consensus 174 S~l~~~p~t~~lliLS~e-----------s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDE-----------SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp -EEEEETTTTEEEEEETT-----------TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred cceEEcCCCCeEEEEECC-----------CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 367777887777777753 5789999999999999887641 1258899999999999999887
Q ss_pred eEEEE
Q 005559 109 TVYRY 113 (691)
Q Consensus 109 tV~ly 113 (691)
-..+|
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 55544
No 386
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=63.39 E-value=2.6e+02 Score=31.63 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=37.8
Q ss_pred CCEEEEEecCCCeEEEEEe-CCeEEEEeCCCC-eec-cccCCC-ccccccCeEEEEEeCCc
Q 005559 88 GRLIGMSWSEDQTLICVVQ-DGTVYRYNIHAE-LIE-PNASMG-KECFEENVVECVFWGNG 144 (691)
Q Consensus 88 ~~Iv~~~fs~de~Lv~v~~-DGtV~ly~~~G~-~~~-~sl~~~-~~~~~~~V~~~~~~~~G 144 (691)
....+|.|.||+++++... .|.|++++..+. ... ..++.- ....+.+...+.+.++.
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 5789999999999988887 599999976532 111 122211 01126788888887654
No 387
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=63.20 E-value=1.8e+02 Score=29.74 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=41.4
Q ss_pred EcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCC
Q 005559 40 CAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH 116 (691)
Q Consensus 40 ~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~ 116 (691)
++.+|..+++.. .++ |.+|+. .+.....+.-. .+|..+.-.++-+++++..||++.+|++.
T Consensus 3 ~~~~~~~L~vGt------------~~G-l~~~~~~~~~~~~~i~~~---~~I~ql~vl~~~~~llvLsd~~l~~~~L~ 64 (275)
T PF00780_consen 3 ADSWGDRLLVGT------------EDG-LYVYDLSDPSKPTRILKL---SSITQLSVLPELNLLLVLSDGQLYVYDLD 64 (275)
T ss_pred cccCCCEEEEEE------------CCC-EEEEEecCCccceeEeec---ceEEEEEEecccCEEEEEcCCccEEEEch
Confidence 445566666663 234 666666 34444444432 35999999998888888888999999875
No 388
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=62.82 E-value=2.5e+02 Score=31.07 Aligned_cols=163 Identities=21% Similarity=0.255 Sum_probs=70.1
Q ss_pred CeEEEEcCCCceeEEEEecCCCCCEEEEEecCC-CeEEEEEeCC-----eEEEE--eCCCCeeccccCCCccccccCeEE
Q 005559 66 RKLRIFNSAGVLISETVWKNPGGRLIGMSWSED-QTLICVVQDG-----TVYRY--NIHAELIEPNASMGKECFEENVVE 137 (691)
Q Consensus 66 ~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~d-e~Lv~v~~DG-----tV~ly--~~~G~~~~~sl~~~~~~~~~~V~~ 137 (691)
..+.|=...|+. ..+--.. .++-.+-|||. ..|+.-.-.| .-|+| +..|.-.+.-.... ...+..
T Consensus 169 ~i~~idl~tG~~-~~v~~~~--~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~----~~e~~g 241 (386)
T PF14583_consen 169 RIFTIDLKTGER-KVVFEDT--DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM----EGESVG 241 (386)
T ss_dssp EEEEEETTT--E-EEEEEES--S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEE
T ss_pred eEEEEECCCCce-eEEEecC--ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC----CCcccc
Confidence 334444455553 3333333 57889999995 4465443433 23778 66776544222222 355777
Q ss_pred EEEe-CCceEEEe----cCC-eEEEE-ecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeC----------
Q 005559 138 CVFW-GNGVVCVT----EAN-RYFCM-ADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTD---------- 200 (691)
Q Consensus 138 ~~~~-~~G~vllt----~~~-~~~~v-~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d---------- 200 (691)
-.|| ++|..+.- ..+ .++.. -+.+....+.+. ..|.|+... .|+||++.|-=+.|
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~-----~~p~~~H~~---ss~Dg~L~vGDG~d~p~~v~~~~~ 313 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM-----EMPWCSHFM---SSPDGKLFVGDGGDAPVDVADAGG 313 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE-----EE-SEEEEE---E-TTSSEEEEEE------------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE-----eCCceeeeE---EcCCCCEEEecCCCCCcccccccc
Confidence 7888 48866544 222 22321 233322222222 124454442 34566655433322
Q ss_pred ------CeEEEEecCCcc--c--ccC----------C-CeeEEEECCCCCEEEEEee-CCeEEEE
Q 005559 201 ------AGILMLDEDGVQ--K--VDD----------T-LSQKMAVSPNGNFVACFTH-DGRLVVN 243 (691)
Q Consensus 201 ------~ti~l~d~~~~~--~--~~~----------~-~i~~Ia~SpnG~~IAl~t~-dg~i~I~ 243 (691)
.-||+++..... . .|. . .=.+.+|||||+.|.+-+. .|...|+
T Consensus 314 ~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 314 YKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp -------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred ceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 256666665322 0 011 1 1237899999999887764 3544443
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.35 E-value=2.2e+02 Score=30.28 Aligned_cols=61 Identities=10% Similarity=0.210 Sum_probs=41.3
Q ss_pred CCEEEEEecCCCe-EEEEEeCCeEEEE-eCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCC
Q 005559 88 GRLIGMSWSEDQT-LICVVQDGTVYRY-NIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN 152 (691)
Q Consensus 88 ~~Iv~~~fs~de~-Lv~v~~DGtV~ly-~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~ 152 (691)
+.|-++.|+|+.+ |+++...+.-.++ +..|++++ +.+...- .+.+ .+.--++|+++++...
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlir-tiPL~g~-~DpE--~Ieyig~n~fvi~dER 148 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIR-TIPLTGF-SDPE--TIEYIGGNQFVIVDER 148 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEE-Eeccccc-CChh--HeEEecCCEEEEEehh
Confidence 4688999999877 7788888888888 99999987 4443210 0111 2233478887777653
No 390
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=62.31 E-value=35 Score=35.31 Aligned_cols=160 Identities=9% Similarity=0.030 Sum_probs=84.0
Q ss_pred eeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCCeEE-
Q 005559 77 LISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYF- 155 (691)
Q Consensus 77 ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~- 155 (691)
.++.+..++.+++--...- ++-..++...||.+-+++..--+ + +.+..+....+-.+.++-..|-.+++.....|
T Consensus 81 ~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~-~--~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n 156 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDL-A--LMSRIPSIHSGSASRKICRHGNSILSGGCGNWN 156 (319)
T ss_pred ceeeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHH-h--hhhhcccccccccccceeecccEEecCCcceEe
Confidence 4555555553333222221 24557789999999988765311 1 11111111122233344455666665443211
Q ss_pred -----EEecCCCceEEEcCC-CCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc------cccCCCeeEEE
Q 005559 156 -----CMADFATMKVCELAR-PEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ------KVDDTLSQKMA 223 (691)
Q Consensus 156 -----~v~n~~~~~~~~l~~-~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~------~~~~~~i~~Ia 223 (691)
+.|.++ |....++. ..+ ...++.+.-| ...+..+..+.||.+-+||.+... ..|..++..|-
T Consensus 157 ~~d~~~a~~~~-p~~t~~~~~~~~-~~v~~l~~hp----~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~ 230 (319)
T KOG4714|consen 157 AQDNFYANTLD-PIKTLIPSKKAL-DAVTALCSHP----AQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVH 230 (319)
T ss_pred eccceeeeccc-cccccccccccc-ccchhhhCCc----ccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhhee
Confidence 222221 11111110 001 1122223211 123445555568889999988554 46889999999
Q ss_pred ECC-CCCEEEEEeeCCeEEEEecC
Q 005559 224 VSP-NGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 224 ~Sp-nG~~IAl~t~dg~i~I~ssd 246 (691)
|.| |+..|-+.++||.+|-|+..
T Consensus 231 FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccCCCchheeEecCCCcEEEEcCC
Confidence 999 45788888999999999754
No 391
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=61.38 E-value=45 Score=33.62 Aligned_cols=72 Identities=11% Similarity=0.195 Sum_probs=49.2
Q ss_pred EEEEecCCCceEEEcCCCCcCCCCceEEEecCCcCCCC-CeEEEEEeCCeEEEEecC--Ccc----cccCCCeeEEEECC
Q 005559 154 YFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTG-SVEVLIGTDAGILMLDED--GVQ----KVDDTLSQKMAVSP 226 (691)
Q Consensus 154 ~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~-~~~vl~s~d~ti~l~d~~--~~~----~~~~~~i~~Ia~Sp 226 (691)
+|.+.+|.+.+..... ..|...+. .| +.+.++..+++|-+|+.. ++. -.+.++|.+|+.|.
T Consensus 2 v~~~H~F~sQ~v~~~~-----~EP~~~c~-------~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~ 69 (215)
T PF14761_consen 2 VYNCHPFGSQNVVPCE-----QEPTAVCC-------GGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSE 69 (215)
T ss_pred eEEecccCCceeeccc-----cCcceeec-------cCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEecc
Confidence 4555566555554433 24665554 45 555555778889999976 443 34679999999999
Q ss_pred CCCEEEEEeeC
Q 005559 227 NGNFVACFTHD 237 (691)
Q Consensus 227 nG~~IAl~t~d 237 (691)
.|++|++.-.+
T Consensus 70 ~GDYlvTlE~k 80 (215)
T PF14761_consen 70 AGDYLVTLEEK 80 (215)
T ss_pred ccceEEEEEee
Confidence 99999998554
No 392
>PF03177 Nucleoporin_C: Non-repetitive/WGA-negative nucleoporin C-terminal; InterPro: IPR007187 This is the C-terminal half of a family of nucleoporin proteins. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. Two nucleoporin classes are known: one is characterised by the FG repeat and the other is represented by this family, which lacks any repeats. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ].; PDB: 3I5P_A 3I5Q_B 3I4R_B 3CQC_B 3CQG_B 3KFO_A.
Probab=60.92 E-value=16 Score=42.71 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=80.7
Q ss_pred cccccc-CCchHHHHHHHHHcCCchHHHHHH-----HHHHhhCChhhHHHHHhcC---hhhHHHHHHHHHh---------
Q 005559 536 VPLLLS-IGEEDTALVKATESGDTDLVYLVI-----FHIWQKRPALEFFGMIQTR---PLACDLFTVYARC--------- 597 (691)
Q Consensus 536 VplLl~-~~~~~~AL~kA~~S~D~dLi~~vl-----l~l~~~~~~~~f~~~l~~~---~~a~~l~~~y~~~--------- 597 (691)
+-.|.+ +|.++.|+.-|-+-.|......++ -.....-........+... .-+..+|..|.++
T Consensus 272 i~~l~~r~~~~~~a~~lae~~~d~~~lv~~~~~~~~~~~~~~~~~~~~~~y~~~~~d~~Fa~~Ly~wyi~~~~~~~l~~l 351 (586)
T PF03177_consen 272 IEALAKRIGCYEEAFELAEKYHDFSSLVELCPDNQLDSLEASEIKERIYQYFEKFGDELFAFFLYDWYIENGKIGKLLEL 351 (586)
T ss_dssp SCCHHHHHCHCCCHHHHHHHTS--HHHHHHH--------HHHSS-TTCHHHHCCS-SCHHHHHCHHHHHHT---T-GGGG
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhcccccccchhHHHHHHHHHHHHCCchHHHHHHHHHHHHhccchHHHhh
Confidence 445666 999999999999999988666655 1111111112222222222 2355666666653
Q ss_pred --cCHHHHHHHHHh---------------cCChhHHHHHHHHHHHhcCCCCCCCCCCCCccchHHHHHHHHhhhhhccc-
Q 005559 598 --YKHEFLKDFFLS---------------TGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKE- 659 (691)
Q Consensus 598 --~~~~~L~~~y~q---------------~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~a~~~~~~~~~- 659 (691)
....+|..|+.+ .++|.++|..+.+.|....... ..+ ...|+..+..+.-......+
T Consensus 352 ~~~~~~~L~~fL~~~~~~~~~L~Wi~~~~~~~y~~AA~~L~~lA~~~~~~~----~~~-~~~r~~ls~~kL~~~a~~~~~ 426 (586)
T PF03177_consen 352 LEIYSPFLERFLRRNPKKYPDLLWIYYIRNGQYSKAAETLLQLAQREADSV----SFP-LEKRIELSLAKLAALASSESD 426 (586)
T ss_dssp GG--GCCCHHHHHC--T-HCCCHHCHHHHTTSHHHHHHHHHHHHHH-HSSH----SS--HHHHHHHHHHHHHHHHS--HH
T ss_pred cccCCHHHHHHHHHHHhhcCCcchHHHHhccCHHHHHHHHHHHHhhhcccc----chh-hHHHHHHHHHHHHHhhccccC
Confidence 123334445444 7889999999999877653320 000 22566665555555554331
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHhh
Q 005559 660 ---HTFESKAAEEHAKLLSVIQEANKR 683 (691)
Q Consensus 660 ---~~f~~~~~~~~~~Ll~~Q~~L~~~ 683 (691)
..=..+.+++++.+.++|++|-+.
T Consensus 427 ~~~~~~~l~~i~~~L~v~~iQ~~l~~~ 453 (586)
T PF03177_consen 427 SPEDQELLEEIEDELDVIRIQERLYEE 453 (586)
T ss_dssp -H-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112356699999999999998873
No 393
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=60.64 E-value=15 Score=39.87 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=56.6
Q ss_pred cCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCC-CCe
Q 005559 41 APFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIH-AEL 119 (691)
Q Consensus 41 sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~-G~~ 119 (691)
||+|..+.+..+..|.-+. +....+.||+..-..+..+.-.. +.+....|||+|+.++.-.++-+.+++.. |+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~---s~~~~y~i~d~~~~~~~~l~~~~--~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRH---SFKGDYYIYDIETGEITPLTPPP--PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSS---EEEEEEEEEETTTTEEEESS-EE--TTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeee---ccceeEEEEecCCCceEECcCCc--cccccceeecCCCeeEEEecCceEEEECCCCCe
Confidence 7999999998775554433 34678999998777676666544 68999999999998877778889999774 444
Q ss_pred ecccc
Q 005559 120 IEPNA 124 (691)
Q Consensus 120 ~~~sl 124 (691)
.+.+.
T Consensus 76 ~~lT~ 80 (353)
T PF00930_consen 76 TQLTT 80 (353)
T ss_dssp EESES
T ss_pred EEecc
Confidence 44343
No 394
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=60.15 E-value=1.9e+02 Score=32.37 Aligned_cols=133 Identities=7% Similarity=0.072 Sum_probs=70.7
Q ss_pred CeEEEEEeCCeEEEEeCCCCe-------eccccCCCccccccCeEEE---EE-eC---CceEEEecCC-eEEEEecCCCc
Q 005559 99 QTLICVVQDGTVYRYNIHAEL-------IEPNASMGKECFEENVVEC---VF-WG---NGVVCVTEAN-RYFCMADFATM 163 (691)
Q Consensus 99 e~Lv~v~~DGtV~ly~~~G~~-------~~~sl~~~~~~~~~~V~~~---~~-~~---~G~vllt~~~-~~~~v~n~~~~ 163 (691)
+++++++.+|++|+|++.++- +++.+ ...|..+ +| .+ +-++|+.... -+|.+...++.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l-------~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL-------KDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEec-------CCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 457888899999999996432 12122 2335544 33 21 3455554442 36666443322
Q ss_pred -------eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-------cccCCCeeEEEECCCCC
Q 005559 164 -------KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGN 229 (691)
Q Consensus 164 -------~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-------~~~~~~i~~Ia~SpnG~ 229 (691)
.+..+-+..++...-.+++.+-.-..+...++.=+.||++.+++.+... .+.+|| |+++|.-.
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y~~~tD 187 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP---LCYCPRTD 187 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC---eEEeecCC
Confidence 2222222223222334444442222235677888889999999888665 245566 34555555
Q ss_pred EEEEEeeCCeEE
Q 005559 230 FVACFTHDGRLV 241 (691)
Q Consensus 230 ~IAl~t~dg~i~ 241 (691)
.+.+.+.+.++.
T Consensus 188 sfvt~sss~~l~ 199 (418)
T PF14727_consen 188 SFVTASSSWTLE 199 (418)
T ss_pred EEEEecCceeEE
Confidence 555555544443
No 395
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=59.76 E-value=12 Score=43.52 Aligned_cols=83 Identities=7% Similarity=0.083 Sum_probs=59.4
Q ss_pred cCCCeEEEEcC--CCceeEEEEecCCCCCEEEEEecC--CCeEEEEEeCCeEEEEeCCCC--eeccccCCCccccccCeE
Q 005559 63 SALRKLRIFNS--AGVLISETVWKNPGGRLIGMSWSE--DQTLICVVQDGTVYRYNIHAE--LIEPNASMGKECFEENVV 136 (691)
Q Consensus 63 ~~~~~I~Iys~--sG~ll~si~~~~~~~~Iv~~~fs~--de~Lv~v~~DGtV~ly~~~G~--~~~~sl~~~~~~~~~~V~ 136 (691)
+..+.|.+|+. .|.++-+++.|- ..|.++.|.. .+++..-..||||+.||..-. .-+++.. .+..|+
T Consensus 177 shg~~i~vwd~r~gs~pl~s~K~~v--s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-----t~~piw 249 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCSLKGHV--SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-----TNFPIW 249 (1081)
T ss_pred ccCCceEEEeccCCCcceEEecccc--eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-----ccCcce
Confidence 46789999995 578999999977 7899999986 456789999999999988532 2121222 145678
Q ss_pred EEEEeC--CceEEEecCC
Q 005559 137 ECVFWG--NGVVCVTEAN 152 (691)
Q Consensus 137 ~~~~~~--~G~vllt~~~ 152 (691)
-.++-| .|..++-..|
T Consensus 250 ~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred eccccccCceeEeccccC
Confidence 777754 6666665554
No 396
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=59.65 E-value=73 Score=38.49 Aligned_cols=131 Identities=8% Similarity=0.047 Sum_probs=77.8
Q ss_pred cCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCe-EEEEEe---------CCeEEEEeCCC-CeeccccCCCccc
Q 005559 63 SALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQT-LICVVQ---------DGTVYRYNIHA-ELIEPNASMGKEC 130 (691)
Q Consensus 63 ~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv~v~~---------DGtV~ly~~~G-~~~~~sl~~~~~~ 130 (691)
...++|.+=++ +-+.+.++..|+ +.|-+|.-. |. |++++- |..|+|||+.- ..+. .++.+.
T Consensus 194 ~t~G~V~LrD~~s~~~iht~~aHs--~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-PI~~~~-- 266 (1118)
T KOG1275|consen 194 DTRGTVFLRDPNSFETIHTFDAHS--GSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-PIQFPY-- 266 (1118)
T ss_pred cccceEEeecCCcCceeeeeeccc--cceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccC-Cccccc--
Confidence 36788888886 678899999998 888877654 44 454333 56678887742 1111 222221
Q ss_pred cccCeEEEEEeC---CceEEEecCCeEEEEec--CCCceEEEc-CCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEE
Q 005559 131 FEENVVECVFWG---NGVVCVTEANRYFCMAD--FATMKVCEL-ARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGIL 204 (691)
Q Consensus 131 ~~~~V~~~~~~~---~G~vllt~~~~~~~v~n--~~~~~~~~l-~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~ 204 (691)
+-.-++|.| +-+++.+.+|.+-.+.- +.+|..... -+| . .+.+.+. ++|++|+..++...+|.|-
T Consensus 267 ---~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p-~--~s~i~~f---DiSsn~~alafgd~~g~v~ 337 (1118)
T KOG1275|consen 267 ---GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP-N--GSGISAF---DISSNGDALAFGDHEGHVN 337 (1118)
T ss_pred ---CchhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc-C--CCcceeE---EecCCCceEEEecccCcEe
Confidence 113346654 45666666666555432 223422211 111 1 1223333 5788999999999999999
Q ss_pred EEecC
Q 005559 205 MLDED 209 (691)
Q Consensus 205 l~d~~ 209 (691)
+|...
T Consensus 338 ~wa~~ 342 (1118)
T KOG1275|consen 338 LWADR 342 (1118)
T ss_pred eecCC
Confidence 99854
No 397
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=59.56 E-value=1e+02 Score=34.21 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=63.0
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhhCChhhHHH-HHhcChhhHHHHHHHHHh-cCHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005559 548 ALVKATESGDTDLVYLVIFHIWQKRPALEFFG-MIQTRPLACDLFTVYARC-YKHEFLKDFFLSTGQLQEVAFLLWKESW 625 (691)
Q Consensus 548 AL~kA~~S~D~dLi~~vll~l~~~~~~~~f~~-~l~~~~~a~~l~~~y~~~-~~~~~L~~~y~q~d~~~~~~~~~l~~~~ 625 (691)
-+.+|++-.|-..|-.|++++++.++...-|+ .+....+|...|..+.|+ .+...+-+.|+-.++-.+++..+-++-.
T Consensus 217 la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~ 296 (554)
T KOG4677|consen 217 LAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHL 296 (554)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 34567777888999999999999888775555 777777898889999887 4678889999999999999988777633
No 398
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=58.99 E-value=2.5e+02 Score=29.84 Aligned_cols=110 Identities=18% Similarity=0.171 Sum_probs=69.4
Q ss_pred CCCeeEEEECCC--CCEEEEEeeC-C-eEEEEec---CCCCceeeccCCCCC-CCCeEEEecCceEEEEEcCeEEEEcCC
Q 005559 216 DTLSQKMAVSPN--GNFVACFTHD-G-RLVVNNT---NFSSPVIDESCESAL-PPEQIAWCGMDSVLLYWNDMLVMVAPQ 287 (691)
Q Consensus 216 ~~~i~~Ia~Spn--G~~IAl~t~d-g-~i~I~ss---d~~~~l~e~d~~~~~-~p~q~~WCG~davvl~~~~~l~liGp~ 287 (691)
..|+..+..+++ +..|+.+... | .+.-..+ +..+..+.|...... .|..+.=-+++..++.+++..+++...
T Consensus 151 ~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~~v~Vn~~ 230 (302)
T smart00036 151 PVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEFGVFVNLY 230 (302)
T ss_pred CccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECcEEEEEeCC
Confidence 345556666655 5677777765 3 2211111 122222222222122 577777778889999999998888888
Q ss_pred C-C-----ceEee-------cCCCeEEeecCCceEEEecCcceeeeccchh
Q 005559 288 A-E-----PVQYF-------YDEPLVLIPECDGVRILSNSSMEFLQRVPAS 325 (691)
Q Consensus 288 ~-~-----~v~f~-------~d~~~~l~~E~DGvRIit~~~~efL~~Vp~~ 325 (691)
| . .+.|. |..+.++.-.-+||-|.+-...+++|.+|+.
T Consensus 231 G~~~~r~~~l~w~~~p~~~~~~~pyll~~~~~~ievr~l~~~~l~q~i~~~ 281 (302)
T smart00036 231 GKRRSRNPILHWEFMPESFAYHSPYLLAFHDNGIEIRSIKTGELLQELADR 281 (302)
T ss_pred CCccccceEEEcCCcccEEEEECCEEEEEcCCcEEEEECCCCceEEEEecC
Confidence 7 2 23332 3346667777899999999999999999874
No 399
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=58.81 E-value=4.8 Score=37.31 Aligned_cols=125 Identities=16% Similarity=0.069 Sum_probs=84.2
Q ss_pred ChHHHHHHHHHcCCHHHHHHHHHHhCC----ChhHHHHHHHHHHhhhcCCCCh-HHHHHHHHHHhccCCCCCHHHHHHHH
Q 005559 439 TASVLIGRLINANCHLLALRISEYLGM----NQEVVIMHWACSKITASLAIPD-VTLLEILLDKLKLCKGISYAAVAAHA 513 (691)
Q Consensus 439 ~~~~li~rL~~r~~~~lA~~I~~~l~~----~~~~Vl~hWA~~kI~~~~~~~D-~~l~~~I~~kl~~~~~is~a~IA~~A 513 (691)
.++.+|+.+..+++..++++.=+.+-. ....+...=+..-++. .+ +++.+.+. .....+...|++.+
T Consensus 9 ~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~----~~~~~l~~~L~----~~~~yd~~~~~~~c 80 (143)
T PF00637_consen 9 EISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKY----DPYEKLLEFLK----TSNNYDLDKALRLC 80 (143)
T ss_dssp CSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCT----TTCCHHHHTTT----SSSSS-CTHHHHHH
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhc----CCchHHHHHcc----cccccCHHHHHHHH
Confidence 344555555555554444433333221 1122333333333321 33 45555553 44457888999999
Q ss_pred HHhCcHHHHHHHHhcCCCCcCcccccccCCchHHHHHHHHHcCCchHHHHHHHHHHhh
Q 005559 514 DKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQK 571 (691)
Q Consensus 514 ~~~GR~~LA~~Ll~~E~~~~~qVplLl~~~~~~~AL~kA~~S~D~dLi~~vll~l~~~ 571 (691)
.+.|..+-|..|...=....+-+-++..+++++.|++-|.+.+|+++...++-++.+.
T Consensus 81 ~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~ 138 (143)
T PF00637_consen 81 EKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDS 138 (143)
T ss_dssp HTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTS
T ss_pred HhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 9999999999999998888888888899999999999999999999999998776554
No 400
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=58.61 E-value=45 Score=35.78 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=69.4
Q ss_pred EEecCCcCCCCCeEEEEEeCCeEEEEecCCcc---------cccCCCeeEEEECC-CCCEEEEEeeCCeEEEEecCCCCc
Q 005559 181 AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---------KVDDTLSQKMAVSP-NGNFVACFTHDGRLVVNNTNFSSP 250 (691)
Q Consensus 181 ~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~---------~~~~~~i~~Ia~Sp-nG~~IAl~t~dg~i~I~ssd~~~~ 250 (691)
.|...+|-..+..++-.-.++.|+.+|..... --|+..++.|..=- ++++|-.-..+|+|.+|+--+-+.
T Consensus 254 DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 254 DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence 34444666566666666679999999987543 12555666654443 667777777889998886544333
Q ss_pred ---eeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecC--CCeEEeecCCc-eEEEecCcceeeeccch
Q 005559 251 ---VIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYD--EPLVLIPECDG-VRILSNSSMEFLQRVPA 324 (691)
Q Consensus 251 ---l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d--~~~~l~~E~DG-vRIit~~~~efL~~Vp~ 324 (691)
...|..|... ..++.+-.+ +.+++...=|. .|||+.+...++..+|-
T Consensus 334 ~~~V~qYeGHvN~---------------------------~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 334 KKSVMQYEGHVNL---------------------------SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccceeeeeccccc---------------------------ccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 3333322100 001111111 23334434455 88888888888888876
Q ss_pred hh
Q 005559 325 ST 326 (691)
Q Consensus 325 ~~ 326 (691)
..
T Consensus 387 ~~ 388 (425)
T KOG2695|consen 387 PY 388 (425)
T ss_pred CC
Confidence 54
No 401
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=58.42 E-value=2e+02 Score=31.79 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=35.0
Q ss_pred eEEEEecCCcc--c--ccCCCeeEEEECCCCCEEEEEeeCC-------eEEEEecCCCCceeeccCCCCCCCCeEEEec
Q 005559 202 GILMLDEDGVQ--K--VDDTLSQKMAVSPNGNFVACFTHDG-------RLVVNNTNFSSPVIDESCESALPPEQIAWCG 269 (691)
Q Consensus 202 ti~l~d~~~~~--~--~~~~~i~~Ia~SpnG~~IAl~t~dg-------~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG 269 (691)
.|+.++..+.+ . .....+.++-+||.---+..|...| +||+++.|-+.. .....+ ..+.|||
T Consensus 169 ~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-~~v~~~-----~~~e~~g 241 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-KKVHRR-----MEGESVG 241 (386)
T ss_dssp EEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS--------TTEEEE
T ss_pred eEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-eeeecC-----CCCcccc
Confidence 56666666443 1 2334567899999887777776543 899999884433 322211 2378885
No 402
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=57.79 E-value=28 Score=24.33 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=15.9
Q ss_pred CCeeEEEECCCCCEEEEEeeC
Q 005559 217 TLSQKMAVSPNGNFVACFTHD 237 (691)
Q Consensus 217 ~~i~~Ia~SpnG~~IAl~t~d 237 (691)
+.-..-++||||+.|+..+..
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEEC
T ss_pred ccccCEEEecCCCEEEEEecC
Confidence 455678999999999998753
No 403
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=57.38 E-value=34 Score=34.85 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecC---CCeEEEEEeCCeEEEE---eCCCCeeccccCCCccccccCeEE
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE---DQTLICVVQDGTVYRY---NIHAELIEPNASMGKECFEENVVE 137 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~---de~Lv~v~~DGtV~ly---~~~G~~~~~sl~~~~~~~~~~V~~ 137 (691)
..-+|.||+.+|+++.++...........|.|.- +|.. ..+|.+.+- .-.|+....... . ...|..
T Consensus 126 ~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~---lp~G~Yt~~V~A~~~g~~~~~~~~-~----~g~V~~ 197 (225)
T PRK06655 126 DNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNA---LPDGNYTIKASASVGGKQLVAQTL-T----YANVQS 197 (225)
T ss_pred cEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCc---CCCeeEEEEEEEEeCCceeeeeee-E----EEEEEE
Confidence 4678999999999999998843224567888853 2332 245554332 224543221111 0 245777
Q ss_pred EEEeCCceEEEecCC
Q 005559 138 CVFWGNGVVCVTEAN 152 (691)
Q Consensus 138 ~~~~~~G~vllt~~~ 152 (691)
+.+-++|..+....+
T Consensus 198 V~~~~~~~~l~l~~~ 212 (225)
T PRK06655 198 VSLGANGGGLDLNLA 212 (225)
T ss_pred EEecCCCcEEEEccC
Confidence 777666655555443
No 404
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=56.11 E-value=2.4e+02 Score=33.30 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=68.3
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEE-EEEeCCeEEEEe
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLI-CVVQDGTVYRYN 114 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv-~v~~DGtV~ly~ 114 (691)
..-+++..+..||+.. ..+.+.+|+..|.....++.....+.++...-++++.+| .+++.|.|-+|-
T Consensus 37 ~lTc~dst~~~l~~Gs------------S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGS------------SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQ 104 (726)
T ss_pred EEEEeecCCceEEEec------------ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeeh
Confidence 4556777788888875 578999999999888777653222678888999999986 678888888885
Q ss_pred CCC----CeeccccCCCccccccCeEEEEEe-CCceEEEecCC
Q 005559 115 IHA----ELIEPNASMGKECFEENVVECVFW-GNGVVCVTEAN 152 (691)
Q Consensus 115 ~~G----~~~~~sl~~~~~~~~~~V~~~~~~-~~G~vllt~~~ 152 (691)
++- +... .-+.++. ....++|--| .||.-+..++.
T Consensus 105 l~~~~p~~~~~-~t~~d~~--~~~rVTal~Ws~~~~k~ysGD~ 144 (726)
T KOG3621|consen 105 LNKELPRDLDY-VTPCDKS--HKCRVTALEWSKNGMKLYSGDS 144 (726)
T ss_pred hhccCCCccee-ecccccc--CCceEEEEEecccccEEeecCC
Confidence 432 2211 1111110 1334455555 59999988773
No 405
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=56.00 E-value=20 Score=42.83 Aligned_cols=210 Identities=13% Similarity=0.118 Sum_probs=115.8
Q ss_pred eEEEEecCCCCCEEEEEecCC-CeEEEEEeCCeEEEEeCC-CCeeccccCCCccccccCeEEEEEeCCceEEEecCCe--
Q 005559 78 ISETVWKNPGGRLIGMSWSED-QTLICVVQDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEANR-- 153 (691)
Q Consensus 78 l~si~~~~~~~~Iv~~~fs~d-e~Lv~v~~DGtV~ly~~~-G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~-- 153 (691)
+.+|.-+. ..-.+..||-+ ++|++++-.|.|++||.+ |.... +..-| +..|.-+.-+.+|-..+|++..
T Consensus 1094 w~~frd~~--~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~-s~ncH----~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1094 WRSFRDET--ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE-SVNCH----QSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred chhhhccc--cceeeEEeecCCceEEeeeccceEEEEEccCccccc-ccccc----ccccccccccCCcceeeeeccccC
Confidence 44444444 56888999976 458899999999999995 65555 55555 5667777778889888886632
Q ss_pred -EEEEecCCCc--eEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCccc------c---cCCCeeE
Q 005559 154 -YFCMADFATM--KVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQK------V---DDTLSQK 221 (691)
Q Consensus 154 -~~~v~n~~~~--~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~~------~---~~~~i~~ 221 (691)
...+|+..+. ....+ ..+-+| .||.+-+.-++........++|...+.. . ..-.=.-
T Consensus 1167 PlsaLW~~~s~~~~~Hsf--------~ed~~v---kFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSF--------DEDKAV---KFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred chHHHhccccccCccccc--------ccccee---ehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccc
Confidence 3344443211 00011 122234 5766655555555555667777776541 0 0011134
Q ss_pred EEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecC-CCeE
Q 005559 222 MAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYD-EPLV 300 (691)
Q Consensus 222 Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d-~~~~ 300 (691)
..|||+-++|- .||.+|=+.+. +.+..||-- .+.|.+ .|-+. ..++
T Consensus 1236 a~FsP~D~LIl---ndGvLWDvR~~--~aIh~FD~f------------------------t~~~~G----~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1236 AHFSPCDTLIL---NDGVLWDVRIP--EAIHRFDQF------------------------TDYGGG----GFHPSGNEVI 1282 (1516)
T ss_pred cccCCCcceEe---eCceeeeeccH--HHHhhhhhh------------------------eecccc----cccCCCceEE
Confidence 67788765442 47777744332 344445411 011111 12222 2455
Q ss_pred EeecCCceEEEecCcceeeeccchhhhhhcccCCCChhhHHHHHH
Q 005559 301 LIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDAL 345 (691)
Q Consensus 301 l~~E~DGvRIit~~~~efL~~Vp~~~~~If~igS~~Pga~L~~A~ 345 (691)
+-+|+ |.-....+|+.||.- +-.+|.+.+.|.+.|-+.
T Consensus 1283 INSEI-----wD~RTF~lLh~VP~L--dqc~VtFNstG~VmYa~~ 1320 (1516)
T KOG1832|consen 1283 INSEI-----WDMRTFKLLHSVPSL--DQCAVTFNSTGDVMYAML 1320 (1516)
T ss_pred eechh-----hhhHHHHHHhcCccc--cceEEEeccCccchhhhh
Confidence 55664 333345778888875 334555666676666553
No 406
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.26 E-value=23 Score=39.95 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=47.0
Q ss_pred cCCCCCEEEEcCCCCeEEEEecCchhhhhh------c----ccCCCeEEEEc-CCCceeEEEEecCCCCCEEEEEecC--
Q 005559 31 IDLSRNKVACAPFGGPIAVIRDDSKIVQLY------A----ESALRKLRIFN-SAGVLISETVWKNPGGRLIGMSWSE-- 97 (691)
Q Consensus 31 ~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~------~----~~~~~~I~Iys-~sG~ll~si~~~~~~~~Iv~~~fs~-- 97 (691)
+.|+.+.|.++|.|..+|+++-+ .++.+. . ++.+++|.-=+ +=|..+-+-. +.=.+....|.|
T Consensus 102 V~feV~~vl~s~~GS~VaL~G~~-Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss---~~ltl~Qa~WHP~S 177 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGSHVALIGIK-GLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS---TSLTLKQAAWHPSS 177 (741)
T ss_pred ceEEEEEEEecCCCceEEEecCC-eeEEEEchhhcCccceecCCCceEEEEeecccceeeccC---CceeeeeccccCCc
Confidence 46788899999999999998632 121110 0 12233332111 0111111111 001355566666
Q ss_pred --CCeEEEEEeCCeEEEEeCC
Q 005559 98 --DQTLICVVQDGTVYRYNIH 116 (691)
Q Consensus 98 --de~Lv~v~~DGtV~ly~~~ 116 (691)
|-+|+++++|.++|+||+.
T Consensus 178 ~~D~hL~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 178 ILDPHLVLLTSDNVIRIYSLS 198 (741)
T ss_pred cCCceEEEEecCcEEEEEecC
Confidence 4579999999999999986
No 407
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=54.48 E-value=28 Score=39.23 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=53.3
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEE-EEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeC
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE-TVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI 115 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~s-i~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~ 115 (691)
..+.++-.|.||+++ .++.|++|+.=|..-.| ++.-. ..|..+.-|.+|+.++++=..++.+-+.
T Consensus 566 ss~~tTesGyIa~as------------~kGDirLyDRig~rAKtalP~lG--~aIk~idvta~Gk~ilaTCk~yllL~d~ 631 (776)
T COG5167 566 SSGMTTESGYIAAAS------------RKGDIRLYDRIGKRAKTALPGLG--DAIKHIDVTANGKHILATCKNYLLLTDV 631 (776)
T ss_pred cccccccCceEEEec------------CCCceeeehhhcchhhhcCcccc--cceeeeEeecCCcEEEEeecceEEEEec
Confidence 345666778888875 68999999999976655 45433 6899999999999888877777888887
Q ss_pred CCCe
Q 005559 116 HAEL 119 (691)
Q Consensus 116 ~G~~ 119 (691)
.++.
T Consensus 632 ~ik~ 635 (776)
T COG5167 632 PIKY 635 (776)
T ss_pred cccc
Confidence 6544
No 408
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=53.87 E-value=1e+02 Score=32.75 Aligned_cols=122 Identities=22% Similarity=0.330 Sum_probs=66.0
Q ss_pred CCCChhhHHHHHHHHHhccCchh--HHHHHHhhh-------------------------hHHHHHHHHHHHcccCCCHHH
Q 005559 333 GSTSPAALLYDALDHFDRRSAKA--DENLRLIRA-------------------------SLPKAVEACIDAAGHEFDISR 385 (691)
Q Consensus 333 gS~~Pga~L~~A~~~~~~~~~~a--~e~lr~i~~-------------------------~L~~AV~~CI~AA~~e~d~~~ 385 (691)
.+.+|+.+.+||.+.|-...++. +.....++. .+..+=..=|..+..+...+.
T Consensus 51 ~A~DPAkLVLdai~~f~~~~~~~~~~~~~~~~r~~cilLLE~L~~~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea 130 (290)
T PF07899_consen 51 CAPDPAKLVLDAIEGFYPPGSKNKKDSKLVDVRRACILLLEQLMRISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEA 130 (290)
T ss_pred cCCChHHHHHHHHHcccCCccccccCcchhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHH
Confidence 57889999999999986655432 111111110 111111112212233344455
Q ss_pred HHHHHHHHhhhchhhcCCChHHHHHHHhHhhhhhccCCCCCccccCHHHHhcCC----hHHHHHHHHHcCCHHHHHHHHH
Q 005559 386 QRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLT----ASVLIGRLINANCHLLALRISE 461 (691)
Q Consensus 386 Qk~LL~AAsfGk~~~~~~~~~~fv~~c~~LRVLN~lr~~~igi~lT~~Q~~~l~----~~~li~rL~~r~~~~lA~~I~~ 461 (691)
+-.|+=-|+||-. +.||.++..+.. +... -|. . +.+=+..|| .+.+|+.|+++|+|..|++.+-
T Consensus 131 ~gFL~lla~fgi~--s~Fd~del~~Lv---~~va-~~~--~----a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~ 198 (290)
T PF07899_consen 131 LGFLQLLAAFGIV--SEFDEDELLKLV---VSVA-RRK--Q----APELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIY 198 (290)
T ss_pred HHHHHHHHHcCCc--cccCHHHHHHHH---HHhc-chH--h----hHHHHHHcCchhhhHHHHHHHHHCCCccchHHHHH
Confidence 5555555666652 245655432221 1111 111 0 111133333 5889999999999999999999
Q ss_pred HhCCC
Q 005559 462 YLGMN 466 (691)
Q Consensus 462 ~l~~~ 466 (691)
.+++-
T Consensus 199 ~f~L~ 203 (290)
T PF07899_consen 199 AFGLV 203 (290)
T ss_pred HHcCC
Confidence 99985
No 409
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=53.07 E-value=2.3e+02 Score=27.77 Aligned_cols=22 Identities=9% Similarity=0.271 Sum_probs=9.8
Q ss_pred CCCCCEEEEEeeCCeEEEEecC
Q 005559 225 SPNGNFVACFTHDGRLVVNNTN 246 (691)
Q Consensus 225 SpnG~~IAl~t~dg~i~I~ssd 246 (691)
-|||..+-.+.+.++.++--.|
T Consensus 43 ~pDg~v~Y~ya~~~T~~tt~pd 64 (179)
T PF07202_consen 43 LPDGRVIYYYADAQTTHTTYPD 64 (179)
T ss_pred ecCCcEEEEEeCCCEEEEEcCC
Confidence 3555444444444444443333
No 410
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=53.04 E-value=1.6e+02 Score=31.61 Aligned_cols=85 Identities=14% Similarity=0.143 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCceeEEEEec-------------CCCCCEEEEEecCCCe-EEEEEeCC--------------eEEEE--e
Q 005559 65 LRKLRIFNSAGVLISETVWK-------------NPGGRLIGMSWSEDQT-LICVVQDG--------------TVYRY--N 114 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~si~~~-------------~~~~~Iv~~~fs~de~-Lv~v~~DG--------------tV~ly--~ 114 (691)
.|.|.-|+.+|+.+..++-. +.+..+-+|.++||++ |+++.+.. .+|++ +
T Consensus 111 ~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d 190 (326)
T PF13449_consen 111 PPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYD 190 (326)
T ss_pred CCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEec
Confidence 49999999999998887321 1124589999999999 66655543 15666 4
Q ss_pred CC--CCe-eccccCCCcc---ccccCeEEEEEeCCceEEEe
Q 005559 115 IH--AEL-IEPNASMGKE---CFEENVVECVFWGNGVVCVT 149 (691)
Q Consensus 115 ~~--G~~-~~~sl~~~~~---~~~~~V~~~~~~~~G~vllt 149 (691)
+. |+. .++.+..... ....+|.++..-++|-+++.
T Consensus 191 ~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 191 PKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 32 322 2233332210 01466778777776644433
No 411
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=52.13 E-value=54 Score=36.51 Aligned_cols=165 Identities=10% Similarity=0.078 Sum_probs=81.0
Q ss_pred CCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeec--cccCCC-ccccccCeEE-EEEeCCceEEE
Q 005559 73 SAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIE--PNASMG-KECFEENVVE-CVFWGNGVVCV 148 (691)
Q Consensus 73 ~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~--~sl~~~-~~~~~~~V~~-~~~~~~G~vll 148 (691)
.+|+.+..+.-.. ..+-.+--+||++++-|-+..++.+|+++..-.+ ...... .+. ...|.+ ...-..|+-++
T Consensus 208 ~q~e~i~~L~~~~--~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~-~~~Vte~l~lL~Gg~SLL 284 (733)
T COG4590 208 TQQEIIRLLSVPF--SDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDS-RHQVTEQLYLLSGGFSLL 284 (733)
T ss_pred chhhhhhhcCCCc--cchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCch-HHHHHHHHHHHhCceeEE
Confidence 3555555544333 5677888999999876666688999977643221 111110 000 011211 01112344333
Q ss_pred e--cCCeEEEEecC---CCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCe
Q 005559 149 T--EANRYFCMADF---ATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLS 219 (691)
Q Consensus 149 t--~~~~~~~v~n~---~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i 219 (691)
. .++-+-.+-++ .+|+...+.+..+ .|..-.++.|. .++.-...++.+|++-++...... ...-...
T Consensus 285 v~~~dG~vsQWFdvr~~~~p~l~h~R~f~l--~pa~~~~l~pe--~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~ 360 (733)
T COG4590 285 VVHEDGLVSQWFDVRRDGQPHLNHIRNFKL--APAEVQFLLPE--TNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAP 360 (733)
T ss_pred EEcCCCceeeeeeeecCCCCcceeeecccc--Ccccceeeccc--cccceEEEEcCCCceeeeecccCcceehhhhhcCc
Confidence 3 33322222221 2233222222111 13333344333 133444555566776666555333 1122356
Q ss_pred eEEEECCCCCEEEEEeeCCeEEEEec
Q 005559 220 QKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 220 ~~Ia~SpnG~~IAl~t~dg~i~I~ss 245 (691)
..+++||++.++++.+ .|++.+..-
T Consensus 361 ~~~~~Sp~~~~Ll~e~-~gki~~~~l 385 (733)
T COG4590 361 QLVAMSPNQAYLLSED-QGKIRLAQL 385 (733)
T ss_pred ceeeeCcccchheeec-CCceEEEEe
Confidence 7899999999998865 467776653
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=51.22 E-value=4.6e+02 Score=30.61 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=41.1
Q ss_pred EEEECCCCCEEEEEeeC-CeEEEEecCCC--CceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCC
Q 005559 221 KMAVSPNGNFVACFTHD-GRLVVNNTNFS--SPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQA 288 (691)
Q Consensus 221 ~Ia~SpnG~~IAl~t~d-g~i~I~ssd~~--~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~ 288 (691)
-|||.|.++.+|.++.. +.|.|++---+ ..+.+.......+|+.+.+-.+.- .+.|||-+.
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdkl-------LLilVGkqK 406 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKL-------LLILVGKQK 406 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCe-------EEEEecccc
Confidence 48999999999999987 67777764322 223444444556898887766533 346777654
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=50.67 E-value=40 Score=24.94 Aligned_cols=29 Identities=28% Similarity=0.462 Sum_probs=23.0
Q ss_pred CCeeEEEECCC-C--CEEEEEeeCCeEEEEec
Q 005559 217 TLSQKMAVSPN-G--NFVACFTHDGRLVVNNT 245 (691)
Q Consensus 217 ~~i~~Ia~Spn-G--~~IAl~t~dg~i~I~ss 245 (691)
|.|..|.|||+ | ++||..-..|.+.|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~ 32 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDT 32 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEc
Confidence 46789999984 4 58888777799999864
No 414
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.55 E-value=3.4e+02 Score=28.85 Aligned_cols=147 Identities=16% Similarity=0.195 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeE--EEEEeCCeE-EEEeCCCCee---------ccccCCCcccc
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL--ICVVQDGTV-YRYNIHAELI---------EPNASMGKECF 131 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~L--v~v~~DGtV-~ly~~~G~~~---------~~sl~~~~~~~ 131 (691)
..-.+-.++..|+.+..+... .+-++|.|+|.-.. +.+-.-||. .++|++|.-. ++.++++
T Consensus 47 gs~g~a~~~eaGk~v~~~~lp---aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG---- 119 (366)
T COG3490 47 GSFGAATLSEAGKIVFATALP---ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG---- 119 (366)
T ss_pred CceeEEEEccCCceeeeeecc---cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc----
Confidence 355678889999999988865 47888999998765 356667774 4568876421 2233333
Q ss_pred ccCeEEEEEeCCceEE-EecCC-----eEEEEecCCCceEEEcCCCC-cCCCCceEEEecCCcCCCCCeEEEEEe-----
Q 005559 132 EENVVECVFWGNGVVC-VTEAN-----RYFCMADFATMKVCELARPE-VEELPHCVAVIEPKYTMTGSVEVLIGT----- 199 (691)
Q Consensus 132 ~~~V~~~~~~~~G~vl-lt~~~-----~~~~v~n~~~~~~~~l~~~~-l~~~~~~w~vi~~~~S~d~~~~vl~s~----- 199 (691)
.|+++|-.+ +|++. .+.-|.+.. ....++.+.+ .+-.||...+. +||.++|.+.-
T Consensus 120 -------vfs~dG~~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm-----~DGrtlvvanGGIeth 186 (366)
T COG3490 120 -------VFSPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLM-----ADGRTLVVANGGIETH 186 (366)
T ss_pred -------ccCCCCcEEEeecCCCCCCCceEEEEecc-cccceecccccCCcCcceeEEe-----cCCcEEEEeCCceecc
Confidence 567777444 44442 133444433 2222332211 11127766654 48887776532
Q ss_pred -------------CCeEEEEe-cCCcc--------cccCCCeeEEEECCCCCE
Q 005559 200 -------------DAGILMLD-EDGVQ--------KVDDTLSQKMAVSPNGNF 230 (691)
Q Consensus 200 -------------d~ti~l~d-~~~~~--------~~~~~~i~~Ia~SpnG~~ 230 (691)
...+.+++ .+|.. ....-++.+|.+-+||..
T Consensus 187 pdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv 239 (366)
T COG3490 187 PDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV 239 (366)
T ss_pred cccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcE
Confidence 23556666 45443 134455666666666643
No 415
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=50.51 E-value=4e+02 Score=29.67 Aligned_cols=143 Identities=12% Similarity=0.094 Sum_probs=72.7
Q ss_pred CEEEEEecCCCeEEEEEeCCeEEEEeCCCC-e-eccccCCCccccccCeEEEEEeCCc-eEEEecCCeEEEEecCCCceE
Q 005559 89 RLIGMSWSEDQTLICVVQDGTVYRYNIHAE-L-IEPNASMGKECFEENVVECVFWGNG-VVCVTEANRYFCMADFATMKV 165 (691)
Q Consensus 89 ~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~-~-~~~sl~~~~~~~~~~V~~~~~~~~G-~vllt~~~~~~~v~n~~~~~~ 165 (691)
....+.-++|+.+++++..|.+..=.-.|. + .....+. ...+..+.+.++| +++++..+.++.-.+ ..+.
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~S~d--~G~~ 312 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYVSKG--TGLT 312 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEEecC--CCCc
Confidence 344455666777777777775443222332 2 3223332 2346666665544 555566666554332 2222
Q ss_pred E---EcCCCCcCCCC-ceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc--c-----ccCCCeeEEEECCCCCEEEEE
Q 005559 166 C---ELARPEVEELP-HCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--K-----VDDTLSQKMAVSPNGNFVACF 234 (691)
Q Consensus 166 ~---~l~~~~l~~~~-~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~--~-----~~~~~i~~Ia~SpnG~~IAl~ 234 (691)
+ .+...+....+ ...++ .|.++ ...++.+.+|.++.....|.. . ....++.+|.|.++++-.+++
T Consensus 313 ~~~~~f~~~~~~~~~~~l~~v---~~~~d-~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 313 EEDFDFEEADIKSRGFGILDV---GYRSK-KEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred ccccceeecccCCCCcceEEE---EEcCC-CcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence 2 22211111111 12223 34433 445666677766666555554 1 124568899998887777765
Q ss_pred eeCCeEEEE
Q 005559 235 THDGRLVVN 243 (691)
Q Consensus 235 t~dg~i~I~ 243 (691)
. +|.|.-+
T Consensus 389 ~-~G~il~~ 396 (398)
T PLN00033 389 N-DGVLLRY 396 (398)
T ss_pred C-CcEEEEe
Confidence 4 6776543
No 416
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=50.45 E-value=1.5e+02 Score=31.61 Aligned_cols=117 Identities=13% Similarity=0.010 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhCChhhHHHHHhcChh----hHHHHHHHHH---hcCHHHHHHHHHhcCChhHHHHHHHHHHHhcC-CCCC
Q 005559 561 VYLVIFHIWQKRPALEFFGMIQTRPL----ACDLFTVYAR---CYKHEFLKDFFLSTGQLQEVAFLLWKESWELG-KNPM 632 (691)
Q Consensus 561 i~~vll~l~~~~~~~~f~~~l~~~~~----a~~l~~~y~~---~~~~~~L~~~y~q~d~~~~~~~~~l~~~~~~~-~~~~ 632 (691)
...++=.|.++ .+|-.+|.+... -..-...|+| .+|.|.+...|.+=+-+.|.|.+.-++|...- .+.
T Consensus 78 m~yifd~L~~n---~qfE~LL~k~~d~~~~lk~all~ylk~~~P~d~e~~~mv~l~F~m~~Eia~~~e~~A~~~l~~l~- 153 (296)
T PF14649_consen 78 MTYIFDILIEN---DQFELLLRKGIDKVNGLKMALLDYLKRCCPEDKEKFSMVALHFNMYREIAELWEKRARQILKKLV- 153 (296)
T ss_pred HHHHHHHHHHc---ChHHHHHhccccccchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44445555543 345555555432 2223455665 46889999999998999999988777655331 110
Q ss_pred CCCC----CCCccchHHHHHHHHhhhhhc-----c-chhHHHHHHHHHHHHHHHHHHHHh
Q 005559 633 ASNG----SALHGPRIKRIEKAHSLFSET-----K-EHTFESKAAEEHAKLLSVIQEANK 682 (691)
Q Consensus 633 ~~~~----~~~~~~~~~~L~~a~~~~~~~-----~-~~~f~~~~~~~~~~Ll~~Q~~L~~ 682 (691)
+.+ .....+..+.|..|.+.|..+ + ++.-.|..|-.|.+|+.+|-.+-+
T Consensus 154 -~~~~~~~l~~~~~~~~~L~~am~~~~~AAe~ylk~~~~~~A~~c~~~a~LvaLQi~l~n 212 (296)
T PF14649_consen 154 -SQPWEESLRDNPELKSELLEAMENFTDAAENYLKDNCLRLAQRCAAQAQLVALQIRLLN 212 (296)
T ss_pred -hccccccccCCHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhhcc
Confidence 000 012234566777777666553 1 123456778899999999998864
No 417
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=50.41 E-value=74 Score=30.09 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=32.4
Q ss_pred CcccccccCCchHHHHHHHH-HcCCchHHHHHHHHHHhh
Q 005559 534 KQVPLLLSIGEEDTALVKAT-ESGDTDLVYLVIFHIWQK 571 (691)
Q Consensus 534 ~qVplLl~~~~~~~AL~kA~-~S~D~dLi~~vll~l~~~ 571 (691)
.+...+|+-.+|..||..|+ .+.+|+.+..||-.|.+.
T Consensus 23 ~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R 61 (148)
T PF09384_consen 23 SKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEELIRR 61 (148)
T ss_pred hHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHc
Confidence 45667788888999999999 889999999999888875
No 418
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=47.74 E-value=4.1e+02 Score=29.10 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=40.1
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEE-EEecCCCCCEEEEEecCCCeE-EEEE
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISE-TVWKNPGGRLIGMSWSEDQTL-ICVV 105 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~s-i~~~~~~~~Iv~~~fs~de~L-v~v~ 105 (691)
..++||+|..+|..-+. +++...+|++++. +|+.+.. |.+.. -..+.|++|++. +...
T Consensus 128 ~~~~Spdg~~la~~~s~-------~G~e~~~l~v~Dl~tg~~l~d~i~~~~----~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSD-------GGSEWYTLRVFDLETGKFLPDGIENPK----FSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EEEETTTSSEEEEEEEE-------TTSSEEEEEEEETTTTEEEEEEEEEEE----SEEEEECTTSSEEEEEE
T ss_pred eeeECCCCCEEEEEecC-------CCCceEEEEEEECCCCcCcCCcccccc----cceEEEeCCCCEEEEEE
Confidence 46899999999998653 2234678999998 7877664 45433 223899999774 4343
No 419
>PHA02248 hypothetical protein
Probab=46.74 E-value=26 Score=32.81 Aligned_cols=61 Identities=16% Similarity=0.316 Sum_probs=44.4
Q ss_pred EcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEec--------------CCCeEEEEE
Q 005559 40 CAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWS--------------EDQTLICVV 105 (691)
Q Consensus 40 ~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs--------------~de~Lv~v~ 105 (691)
.|-+|..||.... ..+.+-+|+-+|+....++... +.++-...|+ |.|.|++-.
T Consensus 50 ~S~~G~~~A~Y~K-----------D~NAVGF~~~~G~T~k~L~H~~-~~~LE~~~FTIEE~~~i~Li~d~LP~GDiLI~~ 117 (204)
T PHA02248 50 VSDNGKFIAKYNK-----------DMNAVGFYEESGDTVKHLTHTT-PERLEGTVFTIEEETEIDLINDTLPQGDILIKF 117 (204)
T ss_pred hhcCCceehhhhc-----------ccceeeeEecCCceecccccCC-hHHccccEEEeeeeeEeehhcCCCCCCcEEEEe
Confidence 5778999999852 4688999999999998887544 3677777777 345566666
Q ss_pred eCCeEEE
Q 005559 106 QDGTVYR 112 (691)
Q Consensus 106 ~DGtV~l 112 (691)
+||.|++
T Consensus 118 ~DG~i~~ 124 (204)
T PHA02248 118 SDGSIYL 124 (204)
T ss_pred eCCeEec
Confidence 6666554
No 420
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=46.05 E-value=55 Score=23.27 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=26.4
Q ss_pred EcCCCceeEEEEecCCCCCEEEEEecCCCeEEE-EEeCCeEEEE
Q 005559 71 FNSAGVLISETVWKNPGGRLIGMSWSEDQTLIC-VVQDGTVYRY 113 (691)
Q Consensus 71 ys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~-v~~DGtV~ly 113 (691)
|+..|++++... .. |....+.|...|+|+. ...+|.+..|
T Consensus 1 yd~~g~l~~~~~-p~--G~~~~~~YD~~Grl~~~tdp~g~~~~~ 41 (42)
T TIGR01643 1 YDAAGRLTGSTD-AD--GTTTRYTYDAAGRLVEITDADGGSTRY 41 (42)
T ss_pred CCCCCCEEEEEC-CC--CCEEEEEECCCCCEEEEECCCCCEEEe
Confidence 567788775443 33 6788888888888874 4456655443
No 421
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=45.61 E-value=2.4e+02 Score=33.24 Aligned_cols=88 Identities=9% Similarity=0.255 Sum_probs=58.5
Q ss_pred eCCeEEEEecCCcc----c--ccCCCeeEE--EECCCCCEEEEEeeCCeEEEEec---CCC------Cceeecc--CCCC
Q 005559 199 TDAGILMLDEDGVQ----K--VDDTLSQKM--AVSPNGNFVACFTHDGRLVVNNT---NFS------SPVIDES--CESA 259 (691)
Q Consensus 199 ~d~ti~l~d~~~~~----~--~~~~~i~~I--a~SpnG~~IAl~t~dg~i~I~ss---d~~------~~l~e~d--~~~~ 259 (691)
...++-+||..+.. . ...++|..+ ...|+|+.|-..+-.+.|.+++- |+. ..+.++| ..++
T Consensus 49 ~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~ 128 (631)
T PF12234_consen 49 SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP 128 (631)
T ss_pred CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCC
Confidence 35567778877554 1 246777776 45789998888888888887743 111 1233444 2234
Q ss_pred CCCCeEEEecCceEEEEEcCeEEEEcC
Q 005559 260 LPPEQIAWCGMDSVLLYWNDMLVMVAP 286 (691)
Q Consensus 260 ~~p~q~~WCG~davvl~~~~~l~liGp 286 (691)
.++.+..|-++...|+.-.+.+++.+.
T Consensus 129 h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 129 HPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred CCccceeEecCCeEEEEeCCEEEEECC
Confidence 466788999998888888888877765
No 422
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=45.47 E-value=78 Score=32.22 Aligned_cols=84 Identities=19% Similarity=0.197 Sum_probs=47.9
Q ss_pred CCeEEEEcCCCceeEEEEecCCCCCEEEEEecC---CCeEEEEEeCCeEEEE---eCCCCeecc-ccCCCccccccCeEE
Q 005559 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE---DQTLICVVQDGTVYRY---NIHAELIEP-NASMGKECFEENVVE 137 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~---de~Lv~v~~DGtV~ly---~~~G~~~~~-sl~~~~~~~~~~V~~ 137 (691)
.-+|.||+.+|+++.++.... | ...+.|.. +|.. ..+|.|.+- .-.|+.... .... ...|..
T Consensus 125 ~v~v~I~D~~G~vV~t~~~~~--G-~~~f~WDG~d~~G~~---l~~G~Yt~~V~A~~~g~~~~~~~~~~-----~g~V~~ 193 (223)
T PRK12813 125 KAELVVRDAAGAEVARETVPV--G-AGPVEWAGEDADGNP---LPNGAYSFVVESYSGGELLDTEPAEV-----YSRIVE 193 (223)
T ss_pred eEEEEEEcCCCCEEEEEeeCC--C-ceeEEeCCcCCCCCc---CCCccEEEEEEEEeCCceeeeeeeeE-----EEEEEE
Confidence 568999999999999998733 3 56688863 2332 356655433 223433221 1110 244777
Q ss_pred EEEeCCceEEEecCCeEEEEec
Q 005559 138 CVFWGNGVVCVTEANRYFCMAD 159 (691)
Q Consensus 138 ~~~~~~G~vllt~~~~~~~v~n 159 (691)
+.+-++|..+...++..+.+.+
T Consensus 194 V~~~~g~~~L~l~gg~~V~l~~ 215 (223)
T PRK12813 194 AQGGSGGTVLVLEGGIEVPASS 215 (223)
T ss_pred EEecCCceEEEEcCCcEEeHHH
Confidence 7765556665555554444433
No 423
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=45.08 E-value=4.4e+02 Score=28.64 Aligned_cols=208 Identities=14% Similarity=0.198 Sum_probs=108.2
Q ss_pred EEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeC
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI 115 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~ 115 (691)
+..+.|+-+.+++..|. |.+.+.+-+.-..|.|-+. +++.+..|.-.. ...+ += +.+.....+..||+...+.+
T Consensus 90 R~~~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~i-yP-~~~~~F~~lC~DGsl~~v~L 164 (342)
T PF06433_consen 90 RAQVVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLI-YP-SGNRGFSMLCGDGSLLTVTL 164 (342)
T ss_dssp B--BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEE-EE-EETTEEEEEETTSCEEEEEE
T ss_pred hheecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEE-Ee-cCCCceEEEecCCceEEEEE
Confidence 33344555566555433 2222222235678888886 456677776532 2222 12 23445778888999888866
Q ss_pred --CCCeeccc---cCCCccccccCeE-EEEEe-CC-ceEEEecCCeEEEEecCCCc----eEEEcCC-CCcCCC--CceE
Q 005559 116 --HAELIEPN---ASMGKECFEENVV-ECVFW-GN-GVVCVTEANRYFCMADFATM----KVCELAR-PEVEEL--PHCV 180 (691)
Q Consensus 116 --~G~~~~~s---l~~~~~~~~~~V~-~~~~~-~~-G~vllt~~~~~~~v~n~~~~----~~~~l~~-~~l~~~--~~~w 180 (691)
.|+..+.. |... ++.+. ..... .+ ..++.|-+|++|.+.--.+. ..|.+.. -..... |..|
T Consensus 165 d~~Gk~~~~~t~~F~~~----~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 165 DADGKEAQKSTKVFDPD----DDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp TSTSSEEEEEEEESSTT----TS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred CCCCCEeEeeccccCCC----CcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 57764311 2111 23343 22222 23 46778899999987543321 2333311 000012 6666
Q ss_pred EEecCCcC-CCCCeEEEEEeCC---------eEEEEecCCcc---ccc-CCCeeEEEECCCCC-EEEEE-eeCCeEEEEe
Q 005559 181 AVIEPKYT-MTGSVEVLIGTDA---------GILMLDEDGVQ---KVD-DTLSQKMAVSPNGN-FVACF-THDGRLVVNN 244 (691)
Q Consensus 181 ~vi~~~~S-~d~~~~vl~s~d~---------ti~l~d~~~~~---~~~-~~~i~~Ia~SpnG~-~IAl~-t~dg~i~I~s 244 (691)
.++. +. +.+.+.|++..+. .|+++|....+ +.+ .+++.+|++|-+.+ +|-.. ..+|.|.|++
T Consensus 241 Q~~A--~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 241 QLIA--YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp S-EE--EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred eeee--eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 6543 32 4566677665422 68888888665 222 35788999999987 44333 3478999998
Q ss_pred cCCCCceeecc
Q 005559 245 TNFSSPVIDES 255 (691)
Q Consensus 245 sd~~~~l~e~d 255 (691)
.--++.+.+.+
T Consensus 319 ~~tGk~~~~~~ 329 (342)
T PF06433_consen 319 AATGKLVRSIE 329 (342)
T ss_dssp TTT--EEEEE-
T ss_pred CcCCcEEeehh
Confidence 76566655443
No 424
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=44.69 E-value=60 Score=24.39 Aligned_cols=49 Identities=27% Similarity=0.416 Sum_probs=32.4
Q ss_pred HHHHHhCcHHHHHHHHhcCCCCcCcccccccCCchHHHHHHHHHcCCchHHHHHH
Q 005559 511 AHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVI 565 (691)
Q Consensus 511 ~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl~~~~~~~AL~kA~~S~D~dLi~~vl 565 (691)
..|...|+.+....|++.-..+..+ =.+...||..|+..|+.+++-..|
T Consensus 6 h~A~~~g~~~~~~~Ll~~~~din~~------d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 6 HWAARSGNLEIVKLLLEHGADINAQ------DEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp HHHHHTT-HHHHHHHHHTTSGTT-B-------TTS--HHHHHHHTT-HHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHCCCCCCCC------CCCCCCHHHHHHHccCHHHHHHHC
Confidence 4677789999999998775443333 245677999999999988887654
No 425
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=44.48 E-value=34 Score=28.66 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCceeEEEEecCCCCCEEEEEec
Q 005559 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWS 96 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs 96 (691)
.-+|.||+.+|+++.++.......-.+.|.|.
T Consensus 26 ~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~Wd 57 (81)
T PF13860_consen 26 NVTVTIYDSNGQVVRTISLGSQSAGEHSFTWD 57 (81)
T ss_dssp EEEEEEEETTS-EEEEEEEEECSSEEEEEEE-
T ss_pred EEEEEEEcCCCCEEEEEEcCCcCCceEEEEEC
Confidence 45899999999999999875433457888887
No 426
>PRK05560 DNA gyrase subunit A; Validated
Probab=44.34 E-value=6.8e+02 Score=30.64 Aligned_cols=215 Identities=11% Similarity=0.069 Sum_probs=104.2
Q ss_pred CEEEEEecC-CCeEEEEEeCCeEEEEeCC----------CCeeccccCCCccccccCeEEEEEeC---C-c-eEEEecCC
Q 005559 89 RLIGMSWSE-DQTLICVVQDGTVYRYNIH----------AELIEPNASMGKECFEENVVECVFWG---N-G-VVCVTEAN 152 (691)
Q Consensus 89 ~Iv~~~fs~-de~Lv~v~~DGtV~ly~~~----------G~~~~~sl~~~~~~~~~~V~~~~~~~---~-G-~vllt~~~ 152 (691)
.+..+.-.. ..+|++++++|.+...... |..+...+.... ...|+.+...+ + . ++++|..|
T Consensus 538 ~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~---~E~Iv~~i~~~~~~~e~~lvlvTk~G 614 (805)
T PRK05560 538 FVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEP---GEKITAILPVREFDDDKYLFFATKNG 614 (805)
T ss_pred eeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCC---CceEEEEEeccCCCCCCEEEEEeCCC
Confidence 455444444 4568899999977766332 222211122111 24465554432 2 2 55666667
Q ss_pred eEEEEe--cCCC-----ceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc--c----------
Q 005559 153 RYFCMA--DFAT-----MKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ--K---------- 213 (691)
Q Consensus 153 ~~~~v~--n~~~-----~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~--~---------- 213 (691)
-+-.+. ++.. .....+.+ ++.-.+... ..+.+.+++++..|.++.+...... .
T Consensus 615 yiKRi~l~~~~~~~r~G~~~ikLke----~D~lv~v~~----~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~ 686 (805)
T PRK05560 615 TVKKTSLSEFSNIRSNGIIAINLDE----GDELIGVRL----TDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIK 686 (805)
T ss_pred EEEEEEhHHhhhcccCCceeeccCC----CCEEEEEEE----eCCCCEEEEEECCCcEEEEEhhhcCccCcccCCccccc
Confidence 555442 2221 11112221 112222221 1244567777788888887776443 1
Q ss_pred cc-CCCee-EEEECCCCCEEEEEeeCCeEEEEecCCCCceeeccCCCC-CC-CCeEEEec-CceEEEE--E--cCeEEEE
Q 005559 214 VD-DTLSQ-KMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESA-LP-PEQIAWCG-MDSVLLY--W--NDMLVMV 284 (691)
Q Consensus 214 ~~-~~~i~-~Ia~SpnG~~IAl~t~dg~i~I~ssd~~~~l~e~d~~~~-~~-p~q~~WCG-~davvl~--~--~~~l~li 284 (691)
+. ...|. .+.+.++++++.+.|..|.++....+ +|..... .. ..-+.--. +|.++.. . ++.++++
T Consensus 687 L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~------e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~ 760 (805)
T PRK05560 687 LREGDEVVSMDVVREDSQEILTVTENGYGKRTPVS------EYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLI 760 (805)
T ss_pred CCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHH------HhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEE
Confidence 11 11222 23344443456666777766654321 2322111 00 11111111 2333321 1 3468888
Q ss_pred cCCCCceEeecCCCeEEeecCCceEEEecCcceeee
Q 005559 285 APQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQ 320 (691)
Q Consensus 285 Gp~~~~v~f~~d~~~~l~~E~DGvRIit~~~~efL~ 320 (691)
...|..++|.-++......---|++++.....+.+.
T Consensus 761 T~~G~~lrf~~~eI~~~gR~a~GVk~I~L~~~D~V~ 796 (805)
T PRK05560 761 TDSGKLIRTRVSEISITGRNTQGVRLIRLDEGDKVV 796 (805)
T ss_pred ecCCeEEEEEHHHCCccccCCCCeeeEecCCCCEEE
Confidence 888989999876655544455688888876555443
No 427
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=44.33 E-value=1.1e+02 Score=31.97 Aligned_cols=89 Identities=24% Similarity=0.269 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEE----eCCCCeeccccCCCccccccCeEEEE
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY----NIHAELIEPNASMGKECFEENVVECV 139 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly----~~~G~~~~~sl~~~~~~~~~~V~~~~ 139 (691)
..-+|.|++.+|+++.++.......-...|.|.-...---...+|.|.+- +-.|+.....+. ...|..+.
T Consensus 141 ~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A~~~~G~~~~~~~~------~~~V~sV~ 214 (259)
T PRK12812 141 DEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVYNNKNGEKITANYG------TYPVEAVK 214 (259)
T ss_pred ceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEEEcCCCcEEeeeee------eEEEEEEE
Confidence 46889999999999999987332234678899652211122355654432 345665542221 12466666
Q ss_pred EeCCceEEEecCCeEEEEec
Q 005559 140 FWGNGVVCVTEANRYFCMAD 159 (691)
Q Consensus 140 ~~~~G~vllt~~~~~~~v~n 159 (691)
+- +|-.++.-.+..+.+.+
T Consensus 215 ~~-~g~~~L~l~g~~v~l~~ 233 (259)
T PRK12812 215 FV-DGVAYAKMAGEYVPMDK 233 (259)
T ss_pred ec-CCeEEEEECCeEEeHHH
Confidence 64 44444443343344333
No 428
>PRK13613 lipoprotein LpqB; Provisional
Probab=43.19 E-value=6.2e+02 Score=29.83 Aligned_cols=188 Identities=18% Similarity=0.137 Sum_probs=88.0
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC--CCce-e-EEEEecCCCCCEEEEEecCCCeEEEEEe--
Q 005559 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS--AGVL-I-SETVWKNPGGRLIGMSWSEDQTLICVVQ-- 106 (691)
Q Consensus 33 l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~--sG~l-l-~si~~~~~~~~Iv~~~fs~de~Lv~v~~-- 106 (691)
+.....|+|++|+.+|...+. ...+.+-.. .|.. + ..-.... ..+..=.|..++.+-++-.
T Consensus 363 ~~~~s~avS~~g~~~A~v~~~-----------~~~l~vg~~~~~~~~~~~~~~~~~~--~~Lt~PS~d~~g~vWtvd~~~ 429 (599)
T PRK13613 363 VPLRRVAVSRDESRAAGISAD-----------GDSVYVGSLTPGASIGVHSWGVTAD--GRLTSPSWDGRGDLWVVDRDP 429 (599)
T ss_pred CCccceEEcCCCceEEEEcCC-----------CcEEEEeccCCCCccccccceeecc--CcccCCcCcCCCCEEEecCCC
Confidence 345578999999999988532 223444322 2220 0 0000111 2344445555555444421
Q ss_pred CC--eEEEEeCCCCeeccccCCCccccccCeEEEEEeCCce--EEEecC---CeEE--EE-ecCCCceEEEcCCCC-cC-
Q 005559 107 DG--TVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGV--VCVTEA---NRYF--CM-ADFATMKVCELARPE-VE- 174 (691)
Q Consensus 107 DG--tV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~--vllt~~---~~~~--~v-~n~~~~~~~~l~~~~-l~- 174 (691)
+| .+++..-.|+.....-..- ....|.+.+++.+|. +++... ++++ .| .+-++. ..|.++- +.
T Consensus 430 ~~~~vl~v~~~~G~~~~V~~~~l---~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~--~~l~~~~~l~~ 504 (599)
T PRK13613 430 ADPRLLWLLQGDGEPVEVRTPEL---DGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV--VSVEEFRSLAP 504 (599)
T ss_pred CCceEEEEEcCCCcEEEeecccc---CCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc--EEeeccEEecc
Confidence 11 2555544555432111111 012599999999994 333432 3322 22 222222 4444321 11
Q ss_pred CCCceEEEecCCcCCCCCeEEEEEe---CCeEEEEecCCcc-c----ccCCCeeEEEECCCCC-EEEEEeeCCeEE
Q 005559 175 ELPHCVAVIEPKYTMTGSVEVLIGT---DAGILMLDEDGVQ-K----VDDTLSQKMAVSPNGN-FVACFTHDGRLV 241 (691)
Q Consensus 175 ~~~~~w~vi~~~~S~d~~~~vl~s~---d~ti~l~d~~~~~-~----~~~~~i~~Ia~SpnG~-~IAl~t~dg~i~ 241 (691)
... .+..-.|..++++.|+... +..++.++.+|.. . ..-.++..|+.+.+-. .+...+.++.|+
T Consensus 505 ~l~---~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v~ 577 (599)
T PRK13613 505 ELE---DVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGSTPPASAPAAVTGVESITASEDERLPLVAGTSEDGIV 577 (599)
T ss_pred CCC---ccceeEEcCCCEEEEEeccCCCCcceEEEecCCcCcccccccCCCCeeEEEecCCCCceEEEEecCCCeE
Confidence 110 1111234445555554321 4578888888765 1 2345677777776654 333324555554
No 429
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=42.86 E-value=45 Score=27.69 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=23.7
Q ss_pred HHHHHHHHhCcHHHHHHHHhcCCCCcCcccccccCCchHHHHHHHHHcCCchHHHH
Q 005559 508 AVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYL 563 (691)
Q Consensus 508 ~IA~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl~~~~~~~AL~kA~~S~D~dLi~~ 563 (691)
..-..|...|+.+....|++....+..+- .+...||..|+..|+.+++-.
T Consensus 28 ~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~~~~~ 77 (89)
T PF12796_consen 28 TALHYAAENGNLEIVKLLLENGADINSQD------KNGNTALHYAAENGNLEIVKL 77 (89)
T ss_dssp BHHHHHHHTTTHHHHHHHHHTTTCTT-BS------TTSSBHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHhcccccccC------CCCCCHHHHHHHcCCHHHHHH
Confidence 34445555555555555555444433222 333345555555555554433
No 430
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=42.53 E-value=39 Score=31.16 Aligned_cols=39 Identities=13% Similarity=0.368 Sum_probs=28.8
Q ss_pred ecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeC
Q 005559 95 WSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWG 142 (691)
Q Consensus 95 fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~ 142 (691)
|...-+++.+.++|++++.|+.++-.-+++ .|..++||+
T Consensus 49 wgeGk~~~m~L~~g~lkLiDP~~~s~LhSq---------PI~~IRvwG 87 (138)
T cd01272 49 WGDGKDLFMDLDEGALKLIDPENLTVLHSQ---------PIHTIRVWG 87 (138)
T ss_pred ccCcceeEEEecCCceEeeCCCCCceEEee---------eeeEEEEEE
Confidence 654445889999999999999865422243 388899995
No 431
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=42.51 E-value=5.4e+02 Score=28.91 Aligned_cols=273 Identities=14% Similarity=0.174 Sum_probs=126.9
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCC--ceeEEEEecC-C----CCCEEEEEecCCCeEEEEEeCC
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG--VLISETVWKN-P----GGRLIGMSWSEDQTLICVVQDG 108 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG--~ll~si~~~~-~----~~~Iv~~~fs~de~Lv~v~~DG 108 (691)
..|+++-+|+-.|++- .+..+.|..+| +.+++++-+. . .+.+++|.|. ||..|.+-.++
T Consensus 90 grVsMah~~~sq~V~i-------------~G~~~gYrYdgat~~l~~~~~~~~~p~y~~g~v~Dv~~~-dGryVw~~pgt 155 (469)
T PF11134_consen 90 GRVSMAHSGGSQAVAI-------------NGKLKGYRYDGATKTLSNWPTDEGYPQYDLGDVVDVTRL-DGRYVWVKPGT 155 (469)
T ss_pred ceEEEEeCCceeEEEE-------------ccccceEEEechhhHhhcCCCcCcccccCccceeEEEec-cceEEEEeCCC
Confidence 4566666665555552 45455555555 4455544322 1 1468999998 88887744444
Q ss_pred eEEEE-eCCCCeeccccC--CCccccccCeEEEEEeCCceEEEecC-CeEEEEecCCCc---eEEEcCCCCcC---CCCc
Q 005559 109 TVYRY-NIHAELIEPNAS--MGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATM---KVCELARPEVE---ELPH 178 (691)
Q Consensus 109 tV~ly-~~~G~~~~~sl~--~~~~~~~~~V~~~~~~~~G~vllt~~-~~~~~v~n~~~~---~~~~l~~~~l~---~~~~ 178 (691)
....+ |+-.+-..-.+. -.+|...++|+.+..|..=++++-.+ ..+|......+. .....+....+ ..++
T Consensus 156 ~~f~vSdL~D~T~~d~~~~~ytAEsqPD~Ivgl~~~r~~I~~fG~~TiEvf~nTGasd~~~~~y~r~pg~~Iq~GcAa~~ 235 (469)
T PF11134_consen 156 GYFFVSDLEDETKPDRYLDFYTAESQPDNIVGLAVWRREIWCFGASTIEVFYNTGASDFTQPPYQRQPGAMIQKGCAAKH 235 (469)
T ss_pred ceEEEeecccccCcchhhhhhhhccCCCceEEEEEeeeeEEEEecccEEEEEccCCcccccchhhhCCcceeeccccccc
Confidence 34444 554321100111 12344467888888888776666544 455555443321 11111211111 1134
Q ss_pred eEEEecCCcCCCCCeEEEEEeC----CeEEEEecCCcccccCCC-------ee----EEEE----CCCCCEEEEEeeCCe
Q 005559 179 CVAVIEPKYTMTGSVEVLIGTD----AGILMLDEDGVQKVDDTL-------SQ----KMAV----SPNGNFVACFTHDGR 239 (691)
Q Consensus 179 ~w~vi~~~~S~d~~~~vl~s~d----~ti~l~d~~~~~~~~~~~-------i~----~Ia~----SpnG~~IAl~t~dg~ 239 (691)
|-+ .-+.+.+.++.+ +.||+.+--...+....+ +. ..+| -.+|..+.+.+--+.
T Consensus 236 s~~-------~~~~t~~wlg~~~~G~~sVy~~~gyq~~RIST~~IE~~l~~ya~~ela~af~et~~f~~h~~l~ihlp~~ 308 (469)
T PF11134_consen 236 SKT-------KFGNTVAWLGHDATGAPSVYRINGYQASRISTHAIEKALRSYAHDELAIAFMETYQFDGHEFLLIHLPRK 308 (469)
T ss_pred eee-------ecCCEEEEeccCCCCCceEEEecCCceeeeccHHHHHHHHhhccHHHHHHHHHHhhcCceEEEEEEcCCc
Confidence 333 245666777764 245554433221100000 00 0111 122222222222222
Q ss_pred EEEEecCCCCc-----eeecc-CCCCCCCCeEEEecCceEEEEEcCeE-EEEcCCC--------CceEeecCCCeEEeec
Q 005559 240 LVVNNTNFSSP-----VIDES-CESALPPEQIAWCGMDSVLLYWNDML-VMVAPQA--------EPVQYFYDEPLVLIPE 304 (691)
Q Consensus 240 i~I~ssd~~~~-----l~e~d-~~~~~~p~q~~WCG~davvl~~~~~l-~liGp~~--------~~v~f~~d~~~~l~~E 304 (691)
.|.+.-.-++. +++=. .+....-....|||+.-+|=-|.+.+ .-.-++. +++.|.+ .=+
T Consensus 309 tlcyD~at~~~~~qw~~l~tg~~~~~~R~~~~~f~~~q~~VGD~~~g~lg~L~~n~~~~yg~~~e~~~~tp------~~~ 382 (469)
T PF11134_consen 309 TLCYDAATSQWGEQWFILKTGFYDEPYRAIDFMFFDNQITVGDKQNGLLGALDFNASTQYGDQIEHIRYTP------MLK 382 (469)
T ss_pred eEEEEcccCCcccceEEEeccccCCcceeeeeEEeCCeeEecccccceeEEecccchhhcCCccceEEEee------eec
Confidence 33322111100 11000 01122335677888877776665532 2222221 2222221 124
Q ss_pred CCceEEEecCcceeeeccchhhhhhcccCCCC
Q 005559 305 CDGVRILSNSSMEFLQRVPASTEQIFAIGSTS 336 (691)
Q Consensus 305 ~DGvRIit~~~~efL~~Vp~~~~~If~igS~~ 336 (691)
-||.|++..+ +|.-.-||.....+|--.++.
T Consensus 383 adgaRvfd~e-ie~~tgv~~~a~~lfls~t~D 413 (469)
T PF11134_consen 383 ADGARVFDFE-IEASTGVAQIADRLFLSATTD 413 (469)
T ss_pred CCCceEEEEE-EEEecCcccccceeEEEeecc
Confidence 6999999954 898889988877777655444
No 432
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=42.41 E-value=1.7e+02 Score=25.16 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=46.3
Q ss_pred EEEEcCCCCeEEEEecCchhhh------hhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeE
Q 005559 37 KVACAPFGGPIAVIRDDSKIVQ------LYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTV 110 (691)
Q Consensus 37 ~vA~sp~GG~IA~~~~~~k~~~------~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV 110 (691)
-+++++++|.|=.+-..+|.-. +-.....+.+--|+++.+....+.-.= .-.-++..|+||+.+++.+-+..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L--~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGL--YFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEE--SSEEEEEE-TTSSEEEEEEGGGT
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCC--CccCeEEEcCCCCEEEEEeccCc
Confidence 4678888777755533233211 111235788889999888776665433 45788899999999999998887
Q ss_pred EEEe
Q 005559 111 YRYN 114 (691)
Q Consensus 111 ~ly~ 114 (691)
||..
T Consensus 80 Ri~r 83 (89)
T PF03088_consen 80 RILR 83 (89)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7763
No 433
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=40.17 E-value=4.2e+02 Score=29.43 Aligned_cols=119 Identities=14% Similarity=0.133 Sum_probs=60.8
Q ss_pred CEEEEEecCC-CeEEEEEeCCeEEEEeCC-----C-Ceecccc-------------------CCCc--------------
Q 005559 89 RLIGMSWSED-QTLICVVQDGTVYRYNIH-----A-ELIEPNA-------------------SMGK-------------- 128 (691)
Q Consensus 89 ~Iv~~~fs~d-e~Lv~v~~DGtV~ly~~~-----G-~~~~~sl-------------------~~~~-------------- 128 (691)
.|..|.|.++ .+|+|+..+|-|.+|.+. | +-..... .+.+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5888999886 899999999999999552 2 0000000 0000
Q ss_pred cccccCeEEEEEeCCceEEEec-CCeEEEEecCCCceEEEc---CCCCcC----CC--CceEEEecCCcCCCCCeEEEEE
Q 005559 129 ECFEENVVECVFWGNGVVCVTE-ANRYFCMADFATMKVCEL---ARPEVE----EL--PHCVAVIEPKYTMTGSVEVLIG 198 (691)
Q Consensus 129 ~~~~~~V~~~~~~~~G~vllt~-~~~~~~v~n~~~~~~~~l---~~~~l~----~~--~~~w~vi~~~~S~d~~~~vl~s 198 (691)
+..++.|..++.++=|++.+.. ++.+..+ |+.+|.+.-- .+.... .. .-.|.|.+..-..-.+..++.+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~vi-D~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVI-DLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEE-ETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEE-ECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 0136778888999988776665 5655555 6677754422 220011 11 2346666543222223455555
Q ss_pred e-CCeEEEEec
Q 005559 199 T-DAGILMLDE 208 (691)
Q Consensus 199 ~-d~ti~l~d~ 208 (691)
+ .|+++.+..
T Consensus 162 Tn~G~v~~fkI 172 (395)
T PF08596_consen 162 TNSGNVLTFKI 172 (395)
T ss_dssp ETTSEEEEEEE
T ss_pred eCCCCEEEEEE
Confidence 5 455555543
No 434
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=39.73 E-value=7.3e+02 Score=30.05 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=64.5
Q ss_pred CCCCeEEEEEeCCeEEEEecCCcc--cccCCCeeE-EEECCCCCEEEE-----------EeeCCeEEEEecCCCCceeec
Q 005559 189 MTGSVEVLIGTDAGILMLDEDGVQ--KVDDTLSQK-MAVSPNGNFVAC-----------FTHDGRLVVNNTNFSSPVIDE 254 (691)
Q Consensus 189 ~d~~~~vl~s~d~ti~l~d~~~~~--~~~~~~i~~-Ia~SpnG~~IAl-----------~t~dg~i~I~ssd~~~~l~e~ 254 (691)
.+.+.+++++..|.+|.+...+.. ....+|+.. +.+.++-+.++. .|..|..+..+ +.+|
T Consensus 534 ~t~d~LllfTs~Gr~yrf~v~eIP~GR~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~------lse~ 607 (735)
T TIGR01062 534 KSNQKVVFIDSTGRSYALDPDNLPSARGQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCN------FNDL 607 (735)
T ss_pred cCCCEEEEEECCCeEEEEEhHhcCcCccCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEE------hHhc
Confidence 356678888888988888776544 334455555 444544444433 33344333332 1233
Q ss_pred cCCCCCCCCeEEEecCceEEE---EEcC--eEEEEcCCCCceEeecCCCeEEeecCCceEEEecC
Q 005559 255 SCESALPPEQIAWCGMDSVLL---YWND--MLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNS 314 (691)
Q Consensus 255 d~~~~~~p~q~~WCG~davvl---~~~~--~l~liGp~~~~v~f~~d~~~~l~~E~DGvRIit~~ 314 (691)
.......-.-+.--.+|.++. .-++ .+.+++.+|..+.|.-++...+.. --|++++...
T Consensus 608 ~~~~RaGKgvi~Lk~~d~lv~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR-gkGVkli~L~ 671 (735)
T TIGR01062 608 IARNKAGKALINLPENASVIAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELSK-GKGNKLIRIP 671 (735)
T ss_pred cccCcCCeEEEEeCCCCEEEEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC-CCCeEEEEcC
Confidence 322111111111112333331 1222 477888889899998776555555 6789998873
No 435
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=38.79 E-value=5.2e+02 Score=27.64 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=44.9
Q ss_pred eEEEEecCCcc-cccCC---CeeEEEECCCCCEEEEEeeC--CeEEEEecCC-----C-Cc-eeeccCCCCCCCCeEEEe
Q 005559 202 GILMLDEDGVQ-KVDDT---LSQKMAVSPNGNFVACFTHD--GRLVVNNTNF-----S-SP-VIDESCESALPPEQIAWC 268 (691)
Q Consensus 202 ti~l~d~~~~~-~~~~~---~i~~Ia~SpnG~~IAl~t~d--g~i~I~ssd~-----~-~~-l~e~d~~~~~~p~q~~WC 268 (691)
.||.++..+.. .+-.+ -=..|+|||||+ ...++++ ++|+.+.-|- . +. ...++ ..+..|..|+=-
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~-~~~G~PDG~~vD 221 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFD-EEPGLPDGMAVD 221 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCC-EEEEEeCCCCeEEEEecCcccCccCCcceEEEcc-CCCCCCCceEEe
Confidence 68888865444 22222 234799999997 4455554 6666554441 1 11 11222 235677666544
Q ss_pred cCceEE--EEEcC-eEEEEcCCCC
Q 005559 269 GMDSVL--LYWND-MLVMVAPQAE 289 (691)
Q Consensus 269 G~davv--l~~~~-~l~liGp~~~ 289 (691)
.+..+- ..|+. .|..+-|+|.
T Consensus 222 adG~lw~~a~~~g~~v~~~~pdG~ 245 (307)
T COG3386 222 ADGNLWVAAVWGGGRVVRFNPDGK 245 (307)
T ss_pred CCCCEEEecccCCceEEEECCCCc
Confidence 333332 12332 5666666664
No 436
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=37.66 E-value=75 Score=22.40 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=21.0
Q ss_pred CceeEEEEecCCCCCE-EEEEecCCCeEEEEEeCCeEEEEeC
Q 005559 75 GVLISETVWKNPGGRL-IGMSWSEDQTLICVVQDGTVYRYNI 115 (691)
Q Consensus 75 G~ll~si~~~~~~~~I-v~~~fs~de~Lv~v~~DGtV~ly~~ 115 (691)
|+++++.+... .+ -++... ++.+++++.||.+..+|.
T Consensus 1 G~~~W~~~~~~---~~~~~~~v~-~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 1 GKVLWSYDTGG---PIWSSPAVA-GGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp S-EEEEEE-SS------S--EEC-TSEEEEE-TTSEEEEEET
T ss_pred CceeEEEECCC---CcCcCCEEE-CCEEEEEcCCCEEEEEeC
Confidence 66777776543 22 222332 677888999999988875
No 437
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=37.58 E-value=66 Score=38.76 Aligned_cols=173 Identities=12% Similarity=0.012 Sum_probs=99.7
Q ss_pred CCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcC-CCceeEEEEecCCCCCEEEEEecCCCeEE-E--EEeC
Q 005559 32 DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTLI-C--VVQD 107 (691)
Q Consensus 32 ~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~~~fs~de~Lv-~--v~~D 107 (691)
+-....+|+|-.-.-+|+.. ..+.|++|+. +|.-..+...|+ ..|.-+.=|.||.+. + .++.
T Consensus 1101 ~~~fTc~afs~~~~hL~vG~------------~~Geik~~nv~sG~~e~s~ncH~--SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGS------------HAGEIKIFNVSSGSMEESVNCHQ--SAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred ccceeeEEeecCCceEEeee------------ccceEEEEEccCccccccccccc--cccccccccCCcceeeeeccccC
Confidence 33445788888888888774 6799999996 799999999998 789999989898853 2 2223
Q ss_pred CeEEEEeCCCCe-eccccCCCccccccCeEEEEEeCCc-eEEEecCCeEEEEecCCC--ceEEEcCCCCcCCCCceEEEe
Q 005559 108 GTVYRYNIHAEL-IEPNASMGKECFEENVVECVFWGNG-VVCVTEANRYFCMADFAT--MKVCELARPEVEELPHCVAVI 183 (691)
Q Consensus 108 GtV~ly~~~G~~-~~~sl~~~~~~~~~~V~~~~~~~~G-~vllt~~~~~~~v~n~~~--~~~~~l~~~~l~~~~~~w~vi 183 (691)
--.-+|++...+ .+++|... ..++|++.- ..++...++...+.+++. +...-|.+ ..+..-.--.+
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~ed--------~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~-~~~~~y~~n~a- 1236 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDED--------KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD-TVTSSYSNNLA- 1236 (1516)
T ss_pred chHHHhccccccCcccccccc--------ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc-chhhhhhcccc-
Confidence 357789886433 23466533 355776643 223333344445555542 22111222 11111111112
Q ss_pred cCCcCCCCCeEEEEEeCCeEEEEecCCcccccC-CC---eeEEEECCCCCEEEEEe
Q 005559 184 EPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDD-TL---SQKMAVSPNGNFVACFT 235 (691)
Q Consensus 184 ~~~~S~d~~~~vl~s~d~ti~l~d~~~~~~~~~-~~---i~~Ia~SpnG~~IAl~t 235 (691)
+|||+...++ .|| .+||....+..|. .. ...=.|.|+|.-+..-+
T Consensus 1237 --~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1237 --HFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS 1285 (1516)
T ss_pred --ccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec
Confidence 6888776433 455 6788775541110 11 11235778887666644
No 438
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=37.00 E-value=53 Score=27.24 Aligned_cols=47 Identities=28% Similarity=0.401 Sum_probs=34.5
Q ss_pred HHHHHhCcHHHHHHHHhcCCCCcCcccccccCCchHHHHHHHHHcCCchHHHHHHHH
Q 005559 511 AHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFH 567 (691)
Q Consensus 511 ~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl~~~~~~~AL~kA~~S~D~dLi~~vll~ 567 (691)
..|.+.|+.+....|++.++.... |+ .||..|+..|+.+.+-.++-+
T Consensus 2 ~~A~~~~~~~~~~~ll~~~~~~~~--------~~--~~l~~A~~~~~~~~~~~Ll~~ 48 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLEKGADINL--------GN--TALHYAAENGNLEIVKLLLEN 48 (89)
T ss_dssp HHHHHTTTHHHHHHHHHTTSTTTS--------SS--BHHHHHHHTTTHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHCcCCCCC--------CC--CHHHHHHHcCCHHHHHHHHHh
Confidence 357788888888888887755544 22 288888888888888887754
No 439
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=36.94 E-value=2.4e+02 Score=34.97 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=70.0
Q ss_pred CCCceeEEEEecCCCCCEEEEEecCCCe-EE-E-EEeCCeEEEE-------eCCCCeeccccCCCccccccCeEEEEEeC
Q 005559 73 SAGVLISETVWKNPGGRLIGMSWSEDQT-LI-C-VVQDGTVYRY-------NIHAELIEPNASMGKECFEENVVECVFWG 142 (691)
Q Consensus 73 ~sG~ll~si~~~~~~~~Iv~~~fs~de~-Lv-~-v~~DGtV~ly-------~~~G~~~~~sl~~~~~~~~~~V~~~~~~~ 142 (691)
..|+++-+|--.- ..+.+.+|-++.. +. + +++|..|.++ -+.+.... ...++ .-.|..+.+..
T Consensus 477 ~n~TlVLsIgesv--eEvtdsgFls~~~Tl~~~l~Gd~slVQi~~d~iRhi~~~~r~~e-w~~P~----~~~Iv~~avnr 549 (1205)
T KOG1898|consen 477 VNGTLVLSIGESV--EEVTDSGFLSTTPTLACSLMGDDSLVQIHPDGIRHIRPTKRINE-WKTPE----RVRIVKCAVNR 549 (1205)
T ss_pred eccEEEEEcchhH--HHhhhcccccCCceEEEEEecCCcEEEEchhhhhhccccccccc-ccCCC----ceEEEEEeecc
Confidence 3566666665222 4566666755433 43 2 3333334443 22232221 11111 35577878888
Q ss_pred CceEEEecCCeEEEEecCCCceEEEcC-CCCcCCCCceEEEecCCcC-CCCCeEEEEEeCCeEEEEecC
Q 005559 143 NGVVCVTEANRYFCMADFATMKVCELA-RPEVEELPHCVAVIEPKYT-MTGSVEVLIGTDAGILMLDED 209 (691)
Q Consensus 143 ~G~vllt~~~~~~~v~n~~~~~~~~l~-~~~l~~~~~~w~vi~~~~S-~d~~~~vl~s~d~ti~l~d~~ 209 (691)
+=+|+.++++.++++..-.+..+..+. .+.+...+.|.++.+-.-- ......++++.|+++..++.+
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~ 618 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLD 618 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEec
Confidence 889999999988877643444444443 2334355888877432100 111246777778887776665
No 440
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=36.69 E-value=68 Score=35.37 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=30.8
Q ss_pred EEEECCCCCEEEEEee-CC----eEEEEecCCCCcee-eccCCCCCCCCeEEEecCceEEE
Q 005559 221 KMAVSPNGNFVACFTH-DG----RLVVNNTNFSSPVI-DESCESALPPEQIAWCGMDSVLL 275 (691)
Q Consensus 221 ~Ia~SpnG~~IAl~t~-dg----~i~I~ssd~~~~l~-e~d~~~~~~p~q~~WCG~davvl 275 (691)
.+++||||+++|..-. .| +++|.+..-++.+. .+. ......+.|..++..+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~---~~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE---NPKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE---EEESEEEEECTTSSEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc---ccccceEEEeCCCCEEE
Confidence 5799999999998643 34 57777765444432 111 11223488886644443
No 441
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=34.93 E-value=72 Score=22.48 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=18.0
Q ss_pred EcCCCceeEEEEecCCCCCEEEEEecCCCeEE
Q 005559 71 FNSAGVLISETVWKNPGGRLIGMSWSEDQTLI 102 (691)
Q Consensus 71 ys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv 102 (691)
|+..|++++... .. |....+.+...++++
T Consensus 1 YD~~G~l~~~~d-~~--G~~~~y~YD~~g~l~ 29 (38)
T PF05593_consen 1 YDANGRLTSVTD-PD--GRTTRYTYDAAGRLT 29 (38)
T ss_pred CCCCCCEEEEEc-CC--CCEEEEEECCCCCEE
Confidence 566777776653 22 566667776666665
No 442
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=34.90 E-value=6.4e+02 Score=27.60 Aligned_cols=76 Identities=16% Similarity=0.172 Sum_probs=53.0
Q ss_pred CCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCC-CceeEEEEecCCCCCEEEEEecCCCeEEEEEe--CCeE
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-GVLISETVWKNPGGRLIGMSWSEDQTLICVVQ--DGTV 110 (691)
Q Consensus 34 ~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~s-G~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~--DGtV 110 (691)
.-..++++|.|+.+=++.-. ....++.+.+.. ++++.+++--. .-.++.++|++..+.+.. ++++
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~---------~~~~~vsvid~~t~~~~~~~~vG~---~P~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAG---------NGNNTVSVIDAATNKVTATIPVGN---TPTGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred CCceEEECCCCCEEEEEecc---------cCCceEEEEeCCCCeEEEEEecCC---CcceEEECCCCCeEEEEecCCCeE
Confidence 34567788888777666410 136888888874 67777755432 238999999999655444 9999
Q ss_pred EEEeCCCCeec
Q 005559 111 YRYNIHAELIE 121 (691)
Q Consensus 111 ~ly~~~G~~~~ 121 (691)
.+.|..+....
T Consensus 185 ~vi~~~~~~v~ 195 (381)
T COG3391 185 SVIDTSGNSVV 195 (381)
T ss_pred EEEeCCCccee
Confidence 99998876544
No 443
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=34.47 E-value=1.9e+02 Score=35.33 Aligned_cols=57 Identities=16% Similarity=0.327 Sum_probs=42.8
Q ss_pred ceEEEecCCcCCCCCeEEE-EEeCC-----eEEEEecCCcc------cccCCCeeEEEECCCCCEEEEE
Q 005559 178 HCVAVIEPKYTMTGSVEVL-IGTDA-----GILMLDEDGVQ------KVDDTLSQKMAVSPNGNFVACF 234 (691)
Q Consensus 178 ~~w~vi~~~~S~d~~~~vl-~s~d~-----ti~l~d~~~~~------~~~~~~i~~Ia~SpnG~~IAl~ 234 (691)
+.+.++.|.+||||+.+++ .+.++ .||+-+.+..- ......|.+-.+.+||..+..+
T Consensus 348 ~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivy 416 (912)
T TIGR02171 348 DTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVY 416 (912)
T ss_pred CCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCCeEEEE
Confidence 3456889999999999999 66654 58887776332 3456678888999999875554
No 444
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=34.15 E-value=2.9e+02 Score=26.57 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=25.0
Q ss_pred CCeeEEEECCCCC------EEEEEeeCCeEEEEecC
Q 005559 217 TLSQKMAVSPNGN------FVACFTHDGRLVVNNTN 246 (691)
Q Consensus 217 ~~i~~Ia~SpnG~------~IAl~t~dg~i~I~ssd 246 (691)
..|..+++||.|= .||.+|.+|.+.|+...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 4788999999763 78999999999998754
No 445
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=34.10 E-value=1.5e+02 Score=36.08 Aligned_cols=86 Identities=21% Similarity=0.207 Sum_probs=51.5
Q ss_pred CeEEEEEe-CCeEEEEecCCcc--c---ccCCCeeEEEECCCCCEEEE-EeeCC-----eEEEEecCC-CCceeeccCCC
Q 005559 192 SVEVLIGT-DAGILMLDEDGVQ--K---VDDTLSQKMAVSPNGNFVAC-FTHDG-----RLVVNNTNF-SSPVIDESCES 258 (691)
Q Consensus 192 ~~~vl~s~-d~ti~l~d~~~~~--~---~~~~~i~~Ia~SpnG~~IAl-~t~dg-----~i~I~ssd~-~~~l~e~d~~~ 258 (691)
..+++... .+.+.+.|.+|.. . .+..|+.+=++||||++||. .+-.+ .|+|.+-+- +..+.+.+-+.
T Consensus 319 tkiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred eeEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 34555553 3578888888755 1 25577888899999999999 44433 344443221 23344566555
Q ss_pred CCCCCeEEEecCceEEEEE
Q 005559 259 ALPPEQIAWCGMDSVLLYW 277 (691)
Q Consensus 259 ~~~p~q~~WCG~davvl~~ 277 (691)
...|+==.--+-|+|+++=
T Consensus 399 aaiprwrv~e~gdt~ivyv 417 (912)
T TIGR02171 399 AAIPRWRVLENGDTVIVYV 417 (912)
T ss_pred ccccceEecCCCCeEEEEE
Confidence 5666522223556777664
No 446
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=33.69 E-value=1.3e+02 Score=30.43 Aligned_cols=76 Identities=12% Similarity=0.024 Sum_probs=44.0
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEE--eCCCCeeccccCCCccccccCeEEEEEe
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY--NIHAELIEPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly--~~~G~~~~~sl~~~~~~~~~~V~~~~~~ 141 (691)
..-+|.||+.+|+. .++.......-.+.+.|...+ ....+|.|++- ...|+-...... ...|..+.+.
T Consensus 123 ~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~---~~lp~G~Y~~~V~a~~g~~~~~~~~------~~~V~~V~~~ 192 (218)
T PRK09619 123 PTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAA---LGLQPGQYQLSVVSGSGEELIPVEV------AGKVNNVRIS 192 (218)
T ss_pred cEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCC---CCCCCceeEEEEEEeCCceeeeeEE------EEEEEEEEec
Confidence 46889999999997 788764322346789997643 23567765543 334543221111 2446666665
Q ss_pred CC-ceEEEe
Q 005559 142 GN-GVVCVT 149 (691)
Q Consensus 142 ~~-G~vllt 149 (691)
++ |..++.
T Consensus 193 ~~~~~~~L~ 201 (218)
T PRK09619 193 PQGGAPQLN 201 (218)
T ss_pred CCCCceEEE
Confidence 54 334343
No 447
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.12 E-value=8.8e+02 Score=29.93 Aligned_cols=52 Identities=23% Similarity=0.198 Sum_probs=33.4
Q ss_pred eEEEEEcCeEEEEcCCCC-----ceEeec-C-----CCeEEeecCCc-eEEEecCcceeeeccc
Q 005559 272 SVLLYWNDMLVMVAPQAE-----PVQYFY-D-----EPLVLIPECDG-VRILSNSSMEFLQRVP 323 (691)
Q Consensus 272 avvl~~~~~l~liGp~~~-----~v~f~~-d-----~~~~l~~E~DG-vRIit~~~~efL~~Vp 323 (691)
.+++.-++..+++-.+|. .+.|+- + ..+++++..|+ +-|++.....++|.++
T Consensus 214 ~ll~~kd~~gv~vd~~G~~~~~~~l~ws~~P~~v~~~~PYlIa~~~~~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 214 ELLLGKDNIGVVVDLNGIIAQRGTLVWSEVPLSVVVESPYLIALLDRSVEIRSKLDGQLVQSIT 277 (877)
T ss_pred eEEEccCceEEEEecCCcccCCCceEecccchhhcccCceEEEEccccEEEEeccCHHHhhccc
Confidence 444443444444444443 455542 1 46888888888 8899988889998884
No 448
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=32.09 E-value=5.2e+02 Score=28.57 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=24.0
Q ss_pred CeeEEEECCCCCEEEEEeeCCeEEEEecCC
Q 005559 218 LSQKMAVSPNGNFVACFTHDGRLVVNNTNF 247 (691)
Q Consensus 218 ~i~~Ia~SpnG~~IAl~t~dg~i~I~ssd~ 247 (691)
.+.+|++-+..+.+.+.+.+|+|.+|+-..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388899988889999999999999998653
No 449
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=31.59 E-value=1e+03 Score=28.91 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=35.2
Q ss_pred ceeEEEEecCCCC-CEEEEEecCC--CeEEEEEeCCeEEEEeCCC
Q 005559 76 VLISETVWKNPGG-RLIGMSWSED--QTLICVVQDGTVYRYNIHA 117 (691)
Q Consensus 76 ~ll~si~~~~~~~-~Iv~~~fs~d--e~Lv~v~~DGtV~ly~~~G 117 (691)
+++.+|..+..+| ...++.|+|. .++++|...|..-||++.|
T Consensus 133 ~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~ 177 (765)
T PF10214_consen 133 NPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKG 177 (765)
T ss_pred ceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEecc
Confidence 6888888777655 6999999984 5789999999999999943
No 450
>PRK00400 hisE phosphoribosyl-ATP pyrophosphatase; Validated
Probab=31.57 E-value=3.3e+02 Score=24.26 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCcCccccccc--CCchHHHHHHHHHcCCchHHHHHH
Q 005559 488 VTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLS--IGEEDTALVKATESGDTDLVYLVI 565 (691)
Q Consensus 488 ~~l~~~I~~kl~~~~~is~a~IA~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl~--~~~~~~AL~kA~~S~D~dLi~~vl 565 (691)
++|.+.|.+|....|.-||. ..-++.|-..++.++-+. -+-+.+- -++. +.+-.--.||+|.+|
T Consensus 6 ~~L~~~I~~Rk~~~~~~SYT---~~L~~~G~~ki~kKlgEE------a~E~i~A~~~~d~-----~~~i~E~ADLlYHll 71 (105)
T PRK00400 6 ERLAATIEERKGADPEGSYT---AKLLDKGLDKILKKVGEE------ATEVVIAAKDGDR-----EELVYEIADLLYHLL 71 (105)
T ss_pred HHHHHHHHHHHhCCCCCcHH---HHHHHCCHHHHHHHHHHH------HHHHHHHHHcCCH-----HHHHHHHHHHHHHHH
Confidence 57889999998888889995 556678888888887652 1111111 1111 122222368999998
Q ss_pred HHHHh-hCChhhHHHHHhc
Q 005559 566 FHIWQ-KRPALEFFGMIQT 583 (691)
Q Consensus 566 l~l~~-~~~~~~f~~~l~~ 583 (691)
+-|.. ..++.+....|..
T Consensus 72 VlL~~~gv~~~dV~~eL~~ 90 (105)
T PRK00400 72 VLLAARGISLEDVLAELER 90 (105)
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 88776 3667777666655
No 451
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.16 E-value=1e+03 Score=28.77 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=19.6
Q ss_pred cCCCCCeEEEEEeCCeEEEEecCC
Q 005559 187 YTMTGSVEVLIGTDAGILMLDEDG 210 (691)
Q Consensus 187 ~S~d~~~~vl~s~d~ti~l~d~~~ 210 (691)
+|.++..++++..|+++.++|...
T Consensus 157 ~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 157 WSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCCCCeEEEEecCCEEEEEecCC
Confidence 345778889999999999999864
No 452
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=31.08 E-value=71 Score=33.65 Aligned_cols=53 Identities=26% Similarity=0.297 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHccc-------CC-CHHHHHHHHHHHhhhchh----hcCCChHHHHHHHhHhhh
Q 005559 365 SLPKAVEACIDAAGH-------EF-DISRQRTLLRAASYGQAF----CSNFQRDRIQEMCKTLRV 417 (691)
Q Consensus 365 ~L~~AV~~CI~AA~~-------e~-d~~~Qk~LL~AAsfGk~~----~~~~~~~~fv~~c~~LRV 417 (691)
.+.+.|..||+.|.. .| |+++=+-||.||.--+-. |+.-+-..|++||..++|
T Consensus 134 ~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~~~~~Fl~Mc~~~~v 198 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQNLPHFLEMCEKLGV 198 (284)
T ss_pred CHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechhcChHHHHHHHHCCC
Confidence 456778888888764 43 689999999999544422 455677899999999887
No 453
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=31.07 E-value=2e+02 Score=25.88 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=40.6
Q ss_pred CEEEEEecCCCeEE-EEEeCCe-EEE---EeCCCCeeccccCC-CccccccCeEEEEEeCCceEEEecCCeEE
Q 005559 89 RLIGMSWSEDQTLI-CVVQDGT-VYR---YNIHAELIEPNASM-GKECFEENVVECVFWGNGVVCVTEANRYF 155 (691)
Q Consensus 89 ~Iv~~~fs~de~Lv-~v~~DGt-V~l---y~~~G~~~~~sl~~-~~~~~~~~V~~~~~~~~G~vllt~~~~~~ 155 (691)
...-|.|.++|+|+ .+..+|. +.. |.+.|+.+...+.. +.+ ....|.-.++..+.+++...+++..
T Consensus 34 ~~~~leF~~dGKL~v~~gnng~~~~~~Gty~L~G~kLtL~~~p~g~t-~k~~Vtv~~l~~~~Lvl~d~dg~~~ 105 (111)
T TIGR03066 34 DDVVIEFAKDGKLVVTIGEKGKEVKADGTYKLDGNKLTLTLKAGGKE-KKETLTVKKLTDDELVGKDPDGKKD 105 (111)
T ss_pred CceEEEEcCCCeEEEecCCCCcEeccCceEEEECCEEEEEEcCCCcc-ccceEEEEEecCCeEEEEcCCCCEe
Confidence 46677899999985 5777775 332 46677766543222 212 1344545566678888888777643
No 454
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=31.04 E-value=1.5e+02 Score=33.02 Aligned_cols=85 Identities=12% Similarity=0.176 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecC-----CCe-EEEEEeCCeEEEEeCCC-Ce-eccccCCCccccccCe
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE-----DQT-LICVVQDGTVYRYNIHA-EL-IEPNASMGKECFEENV 135 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~-----de~-Lv~v~~DGtV~ly~~~G-~~-~~~sl~~~~~~~~~~V 135 (691)
....|++|+.--.....-.|+.. -......+.+ .+. |+++..||.+++|++.+ +. ....+....+ ...+
T Consensus 233 Se~~irv~~~~~~k~~~K~~~~~-~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d--~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHKSFDDP-FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLD--SRRL 309 (395)
T ss_dssp -SSEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-----HHHH
T ss_pred cccceEEEeCCCCcccceeeccc-cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccc--cccc
Confidence 47889999975444445555441 1223344531 333 78999999999999975 22 2223322111 1224
Q ss_pred EEEEEeCCceEEEecC
Q 005559 136 VECVFWGNGVVCVTEA 151 (691)
Q Consensus 136 ~~~~~~~~G~vllt~~ 151 (691)
.++.|..+|-++...+
T Consensus 310 ~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTG 325 (395)
T ss_dssp TT-EE-TTS-EEEE-S
T ss_pred cccEECCCCCEEEEeC
Confidence 4667778886654433
No 455
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=30.57 E-value=1.2e+02 Score=31.02 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=56.9
Q ss_pred eCCceEEEecCCeEEEE-ecCCCceEEEcCCCCcCCCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc-----cc
Q 005559 141 WGNGVVCVTEANRYFCM-ADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-----KV 214 (691)
Q Consensus 141 ~~~G~vllt~~~~~~~v-~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~-----~~ 214 (691)
|+.-+++.++++.++.. ||..+........ ..+...| .|| -..++......+.++.|+.|+..-.. ..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s--~~e~i~~--~Ip--~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS--GEESIDL--GIP--NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc--cccccee--ccc--cccccceeEEeccCCceeeeccccCceeeeecc
Confidence 55666777777766543 4543332222211 0011222 222 11244466777778999999877222 22
Q ss_pred cC-CCeeEEEECCCCCEEEEE--eeCCeEEEEec
Q 005559 215 DD-TLSQKMAVSPNGNFVACF--THDGRLVVNNT 245 (691)
Q Consensus 215 ~~-~~i~~Ia~SpnG~~IAl~--t~dg~i~I~ss 245 (691)
+. .++....++..+++|++. +.+.+++.|+-
T Consensus 143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 33 677777788888899988 77777776653
No 456
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=30.36 E-value=1.2e+02 Score=32.86 Aligned_cols=60 Identities=5% Similarity=0.111 Sum_probs=35.2
Q ss_pred CCEEEEEecCCCeEE-EEEeCCeEEEEeCC----CCeec-cccCCCccccccCeEEEEEeC-CceEEEecCC
Q 005559 88 GRLIGMSWSEDQTLI-CVVQDGTVYRYNIH----AELIE-PNASMGKECFEENVVECVFWG-NGVVCVTEAN 152 (691)
Q Consensus 88 ~~Iv~~~fs~de~Lv-~v~~DGtV~ly~~~----G~~~~-~sl~~~~~~~~~~V~~~~~~~-~G~vllt~~~ 152 (691)
+.|.+..|-..+.|| ++..+|.|..+|+. |+... +-+-|+ ..|...++-. ++..++.++.
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~-----Ssvtslq~Lq~s~q~LmaS~M 319 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD-----SSVTSLQILQFSQQKLMASDM 319 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC-----cchhhhhhhccccceEeeccC
Confidence 467777777656664 78889999999884 32211 122222 3355555555 5666665553
No 457
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=30.20 E-value=2.7e+02 Score=26.96 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHcccCCCHHHHHHHHHHHhhhchhhc--------CCChHHHHHHHhHhhhhhccCCCCCcc
Q 005559 357 ENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCS--------NFQRDRIQEMCKTLRVLNAARDPEIGI 428 (691)
Q Consensus 357 e~lr~i~~~L~~AV~~CI~AA~~e~d~~~Qk~LL~AAsfGk~~~~--------~~~~~~fv~~c~~LRVLN~lr~~~igi 428 (691)
|+||+. ...+-.-++..|..|.+.-...+.|.. ..+.+..+. +++|..=+.++...
T Consensus 15 EYirSl------------~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA----~~LLs~~~~~~~~~ 78 (167)
T PF07035_consen 15 EYIRSL------------NQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLA----CQLLSLGNQYPPAY 78 (167)
T ss_pred HHHHHH------------HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHH----HHHHHhHccChHHH
Q ss_pred ccCHHHHhcCC--hHHHHHHHHHcCCHHHHHHHHHHh----CCChhHHHH
Q 005559 429 PLSIQQYKSLT--ASVLIGRLINANCHLLALRISEYL----GMNQEVVIM 472 (691)
Q Consensus 429 ~lT~~Q~~~l~--~~~li~rL~~r~~~~lA~~I~~~l----~~~~~~Vl~ 472 (691)
-+..+-+..|+ .+.+++-|+..|++..|+|.++-. .+++..++.
T Consensus 79 Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLe 128 (167)
T PF07035_consen 79 QLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLE 128 (167)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHH
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.26 E-value=5e+02 Score=29.90 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred eeEEEECCCCCEEEEEeeCCeE
Q 005559 219 SQKMAVSPNGNFVACFTHDGRL 240 (691)
Q Consensus 219 i~~Ia~SpnG~~IAl~t~dg~i 240 (691)
|.+|.+||.|..+|+.+.+|..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~ 127 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLM 127 (741)
T ss_pred EEEEEecCCCceEEEecCCeeE
Confidence 6789999999999999999855
No 459
>PRK13615 lipoprotein LpqB; Provisional
Probab=29.15 E-value=3.9e+02 Score=31.11 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=40.7
Q ss_pred cCCCeeEEEECCCCCEEEEEee---CCeEEE---EecCCC--Cce----eeccCCCCCCCCeEEEecCceEEEEE
Q 005559 215 DDTLSQKMAVSPNGNFVACFTH---DGRLVV---NNTNFS--SPV----IDESCESALPPEQIAWCGMDSVLLYW 277 (691)
Q Consensus 215 ~~~~i~~Ia~SpnG~~IAl~t~---dg~i~I---~ssd~~--~~l----~e~d~~~~~~p~q~~WCG~davvl~~ 277 (691)
..++|+.+.+|++|-.+|...+ .+++.| .. +-+ ..+ .+.-.. ...+.++.|-+++++++.=
T Consensus 415 ~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R-~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 415 ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVR-DGGVPTSLTTTPLELLAS-PGTPLDATWVDELDVATLT 487 (557)
T ss_pred CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEe-CCCcceEeeeccEEcccC-cCcceeeEEcCCCEEEEEe
Confidence 4478999999999999999865 356664 33 322 123 222222 3378899999999986543
No 460
>PF14695 LINES_C: Lines C-terminus
Probab=29.00 E-value=45 Score=24.08 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhcccccccC
Q 005559 673 LLSVIQEANKRCCVFLFPY 691 (691)
Q Consensus 673 Ll~~Q~~L~~~~~~~~~~~ 691 (691)
|.++|...++-...-+|||
T Consensus 6 l~~L~~aI~rL~~k~LFPY 24 (39)
T PF14695_consen 6 LIRLRLAIERLVRKNLFPY 24 (39)
T ss_pred HHHHHHHHHHHHHCCCCCC
Confidence 6778888888778999998
No 461
>KOG3717 consensus Carnitine O-acyltransferase CRAT [Lipid transport and metabolism]
Probab=28.32 E-value=2.5e+02 Score=32.32 Aligned_cols=122 Identities=17% Similarity=0.266 Sum_probs=79.6
Q ss_pred HHHHHHhhhchhhc--CCChHHHHHHHhHhhhhhccCCCCCccccCHHHHhcCChHHHHHHHHHcCCHHHHHHHHHHhCC
Q 005559 388 TLLRAASYGQAFCS--NFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGM 465 (691)
Q Consensus 388 ~LL~AAsfGk~~~~--~~~~~~fv~~c~~LRVLN~lr~~~igi~lT~~Q~~~l~~~~li~rL~~r~~~~lA~~I~~~l~~ 465 (691)
..++-=.|||.|.. ...||.|+.|+=.|-.-.-.++ .+-||+ +-.+=.|.+=
T Consensus 394 ~V~~f~~yGK~FiK~~k~SPDaFIQmalQLA~yk~h~~----l~aTYE----------------------SAslR~F~~G 447 (612)
T KOG3717|consen 394 TVLKFNHYGKDFIKSQKLSPDAFIQMALQLAFYKLHGR----LVATYE----------------------SASLRRFHEG 447 (612)
T ss_pred EEEEeccccccchhhhCcCchHHHHHHHHHHHHHHhcc----cCcchh----------------------hhhhhhhcCC
Confidence 34455579999987 5689999999966655444333 223332 2222233333
Q ss_pred Ch------hHHHHHHHHHHhhhcCCCChHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCcCccccc
Q 005559 466 NQ------EVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLL 539 (691)
Q Consensus 466 ~~------~~Vl~hWA~~kI~~~~~~~D~~l~~~I~~kl~~~~~is~a~IA~~A~~~GR~~LA~~Ll~~E~~~~~qVplL 539 (691)
.+ +.=...|+.... ++..+.++.++.+++-.. ...-|+.-|..+.-.-|.=||.+++..|.+ +.+|-|
T Consensus 448 RtdtIRS~s~esL~fv~am~--~~~v~~~ek~~llr~Av~--~h~~yt~~ai~G~gvDrHLlgLk~~a~e~~--~~iPel 521 (612)
T KOG3717|consen 448 RTDTIRSASTESLEFVKAMD--DSSVPKSEKLELLRKAVQ--AHTKYTKRAIRGNGVDRHLLGLKLMAIENC--KPIPEL 521 (612)
T ss_pred cccccccCCHHHHHHHHHhh--CCCCCHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHHHHHhC--CCcchh
Confidence 32 344567887654 567788888888765432 234577777777778899999999999984 677766
Q ss_pred cc
Q 005559 540 LS 541 (691)
Q Consensus 540 l~ 541 (691)
-+
T Consensus 522 F~ 523 (612)
T KOG3717|consen 522 FK 523 (612)
T ss_pred hc
Confidence 54
No 462
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=27.88 E-value=3.3e+02 Score=24.31 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=32.9
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCC-CEEEEEecCCCeEEEEEeCCeEEEEeC
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGG-RLIGMSWSEDQTLICVVQDGTVYRYNI 115 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~-~Iv~~~fs~de~Lv~v~~DGtV~ly~~ 115 (691)
.++.+.||+..|..+++-......+ ....+...++|.||+...++. -+|.-
T Consensus 27 ~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~-~lW~S 78 (114)
T PF01453_consen 27 SDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGN-VLWQS 78 (114)
T ss_dssp TTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSE-EEEES
T ss_pred CCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeecce-EEEee
Confidence 5899999998888877763322112 467777778888887775553 44633
No 463
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=27.05 E-value=6e+02 Score=30.86 Aligned_cols=111 Identities=9% Similarity=0.124 Sum_probs=65.8
Q ss_pred CCCCEEEEcC-CCCeEEEEecCchhhhhhcccCCCeEEEEcCCC-cee------------EEEEecC-CCCCEEEEEecC
Q 005559 33 LSRNKVACAP-FGGPIAVIRDDSKIVQLYAESALRKLRIFNSAG-VLI------------SETVWKN-PGGRLIGMSWSE 97 (691)
Q Consensus 33 l~~~~vA~sp-~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG-~ll------------~si~~~~-~~~~Iv~~~fs~ 97 (691)
+..--|++.| +-+.+|++- .++.-.||+-.| ... ++|..+. +...-..+.|..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD------------~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~ 213 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVD------------EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS 213 (765)
T ss_pred CccceEEeccCccceEEEEe------------ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC
Confidence 4445788887 556888884 577888888721 111 2221111 002234778988
Q ss_pred CCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCC--ceEEEecCCeEEEE
Q 005559 98 DQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGN--GVVCVTEANRYFCM 157 (691)
Q Consensus 98 de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~--G~vllt~~~~~~~v 157 (691)
+-.-++|.+...+.++|+.+......+.... ....|.+++-.+. +.+++..+.+++.+
T Consensus 214 ~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~--~~~~IlDv~~~~~~~~~~FiLTs~eiiw~ 273 (765)
T PF10214_consen 214 DSNRLLVCNRSKLMLIDFESNWQTEYLVTAK--TWSWILDVKRSPDNPSHVFILTSKEIIWL 273 (765)
T ss_pred CCCEEEEEcCCceEEEECCCCCccchhccCC--ChhheeeEEecCCccceEEEEecCeEEEE
Confidence 8777777777789999998764421122221 2567999998876 44444444555544
No 464
>PRK13615 lipoprotein LpqB; Provisional
Probab=27.03 E-value=1.1e+03 Score=27.66 Aligned_cols=157 Identities=11% Similarity=-0.009 Sum_probs=79.1
Q ss_pred CCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEE
Q 005559 33 LSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYR 112 (691)
Q Consensus 33 l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~l 112 (691)
+.....|+|++|+.+|... .+..+.++...|........ ..+..=.|.+++-+-++-.....++
T Consensus 334 ~~~~s~avS~dg~~~A~v~------------~~~~l~vg~~~~~~~~~~~~----~~Lt~PS~d~~g~vWtv~~g~~~~l 397 (557)
T PRK13615 334 LQADAATLSADGRQAAVRN------------ASGVWSVGDGDRDAVLLDTR----PGLVAPSLDAQGYVWSTPASDPRGL 397 (557)
T ss_pred cccccceEcCCCceEEEEc------------CCceEEEecCCCcceeeccC----CccccCcCcCCCCEEEEeCCCceEE
Confidence 3335789999999999884 23456666555444332221 2355555776665545444333444
Q ss_pred E--eCCCCeeccccCCCccccccCeEEEEEeCCceE--EEec-C--CeEEE--EecCCCceEEEc-CCCC-cC-CCCceE
Q 005559 113 Y--NIHAELIEPNASMGKECFEENVVECVFWGNGVV--CVTE-A--NRYFC--MADFATMKVCEL-ARPE-VE-ELPHCV 180 (691)
Q Consensus 113 y--~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~v--llt~-~--~~~~~--v~n~~~~~~~~l-~~~~-l~-~~~~~w 180 (691)
. ...|+.......-. ....|.+.+++.+|.= ++.. + ++++. |.. .+..++.| .++- +. ...
T Consensus 398 ~~~~~~G~~~~v~v~~~---~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R-~~~~P~~L~~~p~~l~~~l~--- 470 (557)
T PRK13615 398 VAWGPDGVGHPVAVSWT---ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVR-DGGVPTSLTTTPLELLASPG--- 470 (557)
T ss_pred EEecCCCceEEeecccc---CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEe-CCCcceEeeeccEEcccCcC---
Confidence 4 33555533222211 1356999999999943 3332 1 34432 333 33434455 4421 11 111
Q ss_pred EEecCCcCCCCCeEEEEEe---CCeEEEEecCCcc
Q 005559 181 AVIEPKYTMTGSVEVLIGT---DAGILMLDEDGVQ 212 (691)
Q Consensus 181 ~vi~~~~S~d~~~~vl~s~---d~ti~l~d~~~~~ 212 (691)
.+..-.+..++.+.++... +..+++.+.+|..
T Consensus 471 ~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~~ 505 (557)
T PRK13615 471 TPLDATWVDELDVATLTLAPDGERQVELHQVGGPS 505 (557)
T ss_pred cceeeEEcCCCEEEEEeccCCCCceEEEEECCCcc
Confidence 2222234345554444422 3467888877654
No 465
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=26.97 E-value=57 Score=37.85 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=44.4
Q ss_pred EEEEEe-CCeEEEEecCC-c---ccccCCCeeEEEECC-CCCEEEEEeeCCeEEEEec--CCCCceeeccCCCC---CCC
Q 005559 194 EVLIGT-DAGILMLDEDG-V---QKVDDTLSQKMAVSP-NGNFVACFTHDGRLVVNNT--NFSSPVIDESCESA---LPP 262 (691)
Q Consensus 194 ~vl~s~-d~ti~l~d~~~-~---~~~~~~~i~~Ia~Sp-nG~~IAl~t~dg~i~I~ss--d~~~~l~e~d~~~~---~~p 262 (691)
.|+++. ...+.++|..- + ......-+..++++| ++.++|.++ +|.|-+|++ .++..+...-.+.. ...
T Consensus 168 lvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l 246 (783)
T KOG1008|consen 168 LVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQL 246 (783)
T ss_pred hhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccce
Confidence 344433 44566665541 1 133445688899999 999999998 899999975 23333322211111 124
Q ss_pred CeEEEe
Q 005559 263 EQIAWC 268 (691)
Q Consensus 263 ~q~~WC 268 (691)
.+++||
T Consensus 247 ~~~ayc 252 (783)
T KOG1008|consen 247 FALAYC 252 (783)
T ss_pred eeEEec
Confidence 589999
No 466
>PRK13613 lipoprotein LpqB; Provisional
Probab=26.67 E-value=4.6e+02 Score=30.85 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=39.4
Q ss_pred CCeeEEEECCCCCEEEEEeeC---CeEEEE---ecCCCC-cee---eccCCCCCCCCeEEEecCceEEEE
Q 005559 217 TLSQKMAVSPNGNFVACFTHD---GRLVVN---NTNFSS-PVI---DESCESALPPEQIAWCGMDSVLLY 276 (691)
Q Consensus 217 ~~i~~Ia~SpnG~~IAl~t~d---g~i~I~---ssd~~~-~l~---e~d~~~~~~p~q~~WCG~davvl~ 276 (691)
.+|+.+.+|+||-.+|...+. ++++|. ..+-+. .+. +.-.. -..+.++.|-+++++++.
T Consensus 455 ~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~-l~~v~~~~W~~~~sL~Vl 523 (599)
T PRK13613 455 HRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPE-LEDVTDMSWAGDSQLVVL 523 (599)
T ss_pred CEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccC-CCccceeEEcCCCEEEEE
Confidence 489999999999999998763 566643 222232 222 22222 234789999999998763
No 467
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=26.58 E-value=6e+02 Score=28.76 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=30.5
Q ss_pred eEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEE--eCCCCee
Q 005559 78 ISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY--NIHAELI 120 (691)
Q Consensus 78 l~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly--~~~G~~~ 120 (691)
+..+++..+...|+.++|..+ +++++..+|++.-| +-+|++-
T Consensus 221 ~~~~p~~v~~~~i~qla~G~d-h~i~lt~~G~vy~~Gs~qkgqlG 264 (476)
T COG5184 221 IQFTPLKVPKKAIVQLAAGAD-HLIALTNEGKVYGWGSNQKGQLG 264 (476)
T ss_pred eeeeeeecCchheeeeccCCc-eEEEEecCCcEEEecCCcccccC
Confidence 445555552137999999866 99999999988887 5567653
No 468
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=26.51 E-value=1.2e+02 Score=19.78 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=12.1
Q ss_pred eEEEECCCCCEEEEEeeCCeEEE
Q 005559 220 QKMAVSPNGNFVACFTHDGRLVV 242 (691)
Q Consensus 220 ~~Ia~SpnG~~IAl~t~dg~i~I 242 (691)
+.|+++++|+++.+=+....|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 45666666655444444445543
No 469
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=26.00 E-value=2.2e+02 Score=19.64 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=23.1
Q ss_pred CCCCEEEEEee-CCeEEEEecCCCCceeeccCCCCCCCCeEEE
Q 005559 226 PNGNFVACFTH-DGRLVVNNTNFSSPVIDESCESALPPEQIAW 267 (691)
Q Consensus 226 pnG~~IAl~t~-dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~W 267 (691)
|+|++|-..+. +++|.+++..-.+.+.+++.. ..|..|.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg--~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG--GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC--CCCceEEe
Confidence 56776655553 577777766545555555543 25666654
No 470
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=25.60 E-value=4.8e+02 Score=23.22 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=33.7
Q ss_pred EEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecCCCc
Q 005559 91 IGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATM 163 (691)
Q Consensus 91 v~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~~~~ 163 (691)
..+.++.||.|++-..+|.+ +|.-.+ +-+.. .....+.+-++|-+++.....-.....++.|
T Consensus 21 ~~L~l~~dGnLvl~~~~~~~-iWss~~-----t~~~~-----~~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~p 82 (114)
T PF01453_consen 21 YTLILQSDGNLVLYDSNGSV-IWSSNN-----TSGRG-----NSGCYLVLQDDGNLVLYDSSGNVLWQSFDYP 82 (114)
T ss_dssp EEEEEETTSEEEEEETTTEE-EEE--S------TTSS------SSEEEEEETTSEEEEEETTSEEEEESTTSS
T ss_pred ccceECCCCeEEEEcCCCCE-EEEecc-----cCCcc-----ccCeEEEEeCCCCEEEEeecceEEEeecCCC
Confidence 34556677777777666666 775521 11111 0356678888887777665443344444444
No 471
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.11 E-value=8.2e+02 Score=25.71 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=31.3
Q ss_pred CCCCeEEEEEeCCeEEEEecCCcc--cccCCCeeEEEECCC------------CCEEEEEeeCCeEEEEec
Q 005559 189 MTGSVEVLIGTDAGILMLDEDGVQ--KVDDTLSQKMAVSPN------------GNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 189 ~d~~~~vl~s~d~ti~l~d~~~~~--~~~~~~i~~Ia~Spn------------G~~IAl~t~dg~i~I~ss 245 (691)
|+-+.+++-..+--.+.....|.. ....|-..++.+||+ -++++-.+.||+++|.-.
T Consensus 229 Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~ 299 (354)
T KOG4649|consen 229 PSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMT 299 (354)
T ss_pred CcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEe
Confidence 333444444444434444444444 333445566777762 246777778999998744
No 472
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=25.07 E-value=7.5e+02 Score=25.27 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHhhhchhhcCCChHHHHHHHhHhhhhhccCCCCCccccCHHHHhcCChHHHHHHHHHcCCHHHHHHHHH
Q 005559 382 DISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISE 461 (691)
Q Consensus 382 d~~~Qk~LL~AAsfGk~~~~~~~~~~fv~~c~~LRVLN~lr~~~igi~lT~~Q~~~l~~~~li~rL~~r~~~~lA~~I~~ 461 (691)
|...--++||-+ |-+..+..++-+.|+++ ||.+... - +.+=.++.+.-.++.|++||+
T Consensus 119 de~~vaR~LR~~-fT~~vlgF~~E~~l~k~---lr~~~~a-~-----------------pe~~~t~~~y~rFY~AfKiAE 176 (231)
T PF09958_consen 119 DENKVARVLRLV-FTKVVLGFFDEEELIKA---LRKLEEA-F-----------------PELKETARSYARFYIAFKIAE 176 (231)
T ss_pred hHHHHHHHHHHH-HHHHHHccCCHHHHHHH---HHHHHHh-C-----------------hHHHHHHHHHHHHHHHHHHHH
Confidence 666666777764 45556666666666554 5555543 2 344478888999999999998
Q ss_pred HhCCC
Q 005559 462 YLGMN 466 (691)
Q Consensus 462 ~l~~~ 466 (691)
.....
T Consensus 177 ~Ia~g 181 (231)
T PF09958_consen 177 AIAEG 181 (231)
T ss_pred HHHhc
Confidence 66543
No 473
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.37 E-value=1.2e+03 Score=29.72 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHhCCCh--hHHHHHHHHHHhhhcCCCChHH---HHHHHHHHhccCCCCC------HHHHHHHHHHhCcHH
Q 005559 452 CHLLALRISEYLGMNQ--EVVIMHWACSKITASLAIPDVT---LLEILLDKLKLCKGIS------YAAVAAHADKSGRRK 520 (691)
Q Consensus 452 ~~~lA~~I~~~l~~~~--~~Vl~hWA~~kI~~~~~~~D~~---l~~~I~~kl~~~~~is------~a~IA~~A~~~GR~~ 520 (691)
.-.|+.+|=+||.-+. ..-...=|...+.....++.++ |...|.+++.+.+.|. -.+||+++-..-+-+
T Consensus 1473 l~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~ 1552 (1758)
T KOG0994|consen 1473 LRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAE 1552 (1758)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHH
Confidence 3456677777887762 1122333444443343444444 5566888888777653 344554444444444
Q ss_pred HHHHHHhcCCCCcCcccccccCCc-hHHHHHHHHHcCCch--HHHHHHHHHHhh
Q 005559 521 LAAMLVEHEPRSSKQVPLLLSIGE-EDTALVKATESGDTD--LVYLVIFHIWQK 571 (691)
Q Consensus 521 LA~~Ll~~E~~~~~qVplLl~~~~-~~~AL~kA~~S~D~d--Li~~vll~l~~~ 571 (691)
-|.+=.+.+....+-|.-=|+..+ --.+.+.||+--|.| ++-..|-++++.
T Consensus 1553 ~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~ 1606 (1758)
T KOG0994|consen 1553 RARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEE 1606 (1758)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444444443333333333222211 112223445544554 344455555554
No 474
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=24.20 E-value=1.6e+02 Score=19.55 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=19.5
Q ss_pred CeeEEEECCCCCEEEEEeeCCeEEEEe
Q 005559 218 LSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 218 ~i~~Ia~SpnG~~IAl~t~dg~i~I~s 244 (691)
.+..|+.+++ ++|..|..+.++|++
T Consensus 3 ~i~aia~g~~--~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS--WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC--EEEEEeCCCeEEecC
Confidence 4677888876 799998888888763
No 475
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=23.97 E-value=1.2e+02 Score=33.87 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=38.2
Q ss_pred CCCeEEEEcCCCceeEEEEecCCCCCEEEEEecC-------C---CeEEEEEeCCeEEEEe
Q 005559 64 ALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSE-------D---QTLICVVQDGTVYRYN 114 (691)
Q Consensus 64 ~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~-------d---e~Lv~v~~DGtV~ly~ 114 (691)
..+.|++|+-+|.+|-+-..|. ++|+.+.... + |+|.++.. ++|-+.|
T Consensus 87 ssG~vrfyte~G~LL~~Q~~h~--~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Id 144 (415)
T PF14655_consen 87 SSGYVRFYTENGVLLLSQLLHE--EPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIID 144 (415)
T ss_pred cccEEEEEeccchHHHHHhcCc--cceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEe
Confidence 6899999999999999988887 7899998853 1 66777777 5566564
No 476
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.74 E-value=8.7e+02 Score=25.53 Aligned_cols=118 Identities=13% Similarity=0.114 Sum_probs=53.9
Q ss_pred CCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeC-CCCeec
Q 005559 43 FGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNI-HAELIE 121 (691)
Q Consensus 43 ~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~-~G~~~~ 121 (691)
++.|+.+..|. |...+-++-....+.|=-.+|++++.-... ++|-+-.---.+..|+.-.+|.+++-+. .|+...
T Consensus 12 DaspLVV~~ds-kT~v~igSHs~~~~avd~~sG~~~We~ilg---~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w 87 (354)
T KOG4649|consen 12 DASPLVVCNDS-KTLVVIGSHSGIVIAVDPQSGNLIWEAILG---VRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIW 87 (354)
T ss_pred cCCcEEEecCC-ceEEEEecCCceEEEecCCCCcEEeehhhC---ceeeeeeEEECCEEEEEEccCcEEEEEecchhhee
Confidence 44455555442 322222222223333333477776653321 2443333322444667888887777766 475433
Q ss_pred cccCCCccccccCeEEEEEeCCceEEEe-cCCeEEEEecCCCceEEEc
Q 005559 122 PNASMGKECFEENVVECVFWGNGVVCVT-EANRYFCMADFATMKVCEL 168 (691)
Q Consensus 122 ~sl~~~~~~~~~~V~~~~~~~~G~vllt-~~~~~~~v~n~~~~~~~~l 168 (691)
.+...+ ..++....=...|++..+ .++++|.++--...-+|+.
T Consensus 88 ~f~~~~----~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 88 NFVILE----TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred eeeehh----hhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 121111 122322222345655544 4567777744333344443
No 477
>COG0140 HisI Phosphoribosyl-ATP pyrophosphohydrolase [Amino acid transport and metabolism]
Probab=23.32 E-value=5e+02 Score=22.60 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCcCcccccc-cCCchHHHHHHHHHcCCchHHHHHHH
Q 005559 488 VTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLL-SIGEEDTALVKATESGDTDLVYLVIF 566 (691)
Q Consensus 488 ~~l~~~I~~kl~~~~~is~a~IA~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl-~~~~~~~AL~kA~~S~D~dLi~~vll 566 (691)
.+|.+.|.+|....|.-||. ...+..|-..+|.|+.| +-|...+ ..+++. +.+-+--.||+|..|+
T Consensus 2 ~~L~~~i~~Rk~~~pe~SYT---a~L~~~G~~ki~kKvGE------Ea~E~~iAa~~~d~----e~l~~E~ADLlYH~lV 68 (92)
T COG0140 2 SELEAVIADRKNARPEGSYT---AKLLAKGIDKIAKKVGE------EAVEVILAAKDEDK----EELVSEAADLLYHLLV 68 (92)
T ss_pred hHHHHHHHHHHhcCCCchHH---HHHHHCcHHHHHHHHhH------HHHHHHHHHHhcch----HHHHHHHHHHHHHHHH
Confidence 36888999998888999995 56777887777777654 1122222 111111 1233334789998887
Q ss_pred HHHh-hCChhhHHHHHhc
Q 005559 567 HIWQ-KRPALEFFGMIQT 583 (691)
Q Consensus 567 ~l~~-~~~~~~f~~~l~~ 583 (691)
-|.. .+++.+..+-|..
T Consensus 69 lL~~~gv~l~dV~~eL~~ 86 (92)
T COG0140 69 LLAAQGLSLEDVLRELER 86 (92)
T ss_pred HHHHcCCCHHHHHHHHHH
Confidence 7664 4666666655543
No 478
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=23.15 E-value=2.9e+02 Score=33.72 Aligned_cols=107 Identities=11% Similarity=0.013 Sum_probs=58.6
Q ss_pred cCeEEEEEe----CCceEEEecCCeEEEEecCCCce----EEEcCCCCcCCC--CceEEEecCCcCCCCCeEEEEEeCCe
Q 005559 133 ENVVECVFW----GNGVVCVTEANRYFCMADFATMK----VCELARPEVEEL--PHCVAVIEPKYTMTGSVEVLIGTDAG 202 (691)
Q Consensus 133 ~~V~~~~~~----~~G~vllt~~~~~~~v~n~~~~~----~~~l~~~~l~~~--~~~w~vi~~~~S~d~~~~vl~s~d~t 202 (691)
++|.+..|- +.|. ...++.-+|.|.-+++.. ...... +.+.. --.|+- |-++...+..-..+++
T Consensus 133 G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~-p~gs~~~~V~wcp----~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 133 GGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPIT-PYGSDPQLVSWCP----IAVNKVYICYGLKGGE 206 (1283)
T ss_pred CCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecC-cCCCCcceeeecc----cccccceeeeccCCCc
Confidence 446666663 4455 333444456555444321 111111 12122 345663 3345566666666888
Q ss_pred EEEEecCCcc----cccCCCeeEE-----------EECCCCCEEEEEeeCCeEEEEec
Q 005559 203 ILMLDEDGVQ----KVDDTLSQKM-----------AVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 203 i~l~d~~~~~----~~~~~~i~~I-----------a~SpnG~~IAl~t~dg~i~I~ss 245 (691)
+.++..+... ..|...++.| .+||||+.+|....||.+..|..
T Consensus 207 i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 207 IRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 8777666433 2233322222 58999999999999997765544
No 479
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=22.73 E-value=1.3e+02 Score=19.61 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=18.0
Q ss_pred hHHHHHHHHHcCCchHHHHHHHHHHh
Q 005559 545 EDTALVKATESGDTDLVYLVIFHIWQ 570 (691)
Q Consensus 545 ~~~AL~kA~~S~D~dLi~~vll~l~~ 570 (691)
|+..+....++||++.+..++-+|++
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566777777777777777766664
No 480
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.14 E-value=9.4e+02 Score=25.34 Aligned_cols=54 Identities=11% Similarity=0.251 Sum_probs=38.9
Q ss_pred CCeEEEEcCCCceeEEEEecCCCCCEEEEEecCCCeEEEEEe-------CCeEEEEeCCCCe
Q 005559 65 LRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQ-------DGTVYRYNIHAEL 119 (691)
Q Consensus 65 ~~~I~Iys~sG~ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~-------DGtV~ly~~~G~~ 119 (691)
=+.|++|+.++....++--. ..|.|.+|.|..+.+|++++. ...+..||+.+.-
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 57799999888766665433 337899999997888865543 4457788887654
No 481
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=22.03 E-value=7.9e+02 Score=26.30 Aligned_cols=58 Identities=17% Similarity=0.329 Sum_probs=37.2
Q ss_pred CEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCce---eEEEE--ecCCCCCEEEEEecCC----CeEEEEEe
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVL---ISETV--WKNPGGRLIGMSWSED----QTLICVVQ 106 (691)
Q Consensus 36 ~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~l---l~si~--~~~~~~~Iv~~~fs~d----e~Lv~v~~ 106 (691)
..+++.|+|.++...+ .+.|.+++.+|.. +..+. .....+.+.++.|.|+ +.|.+...
T Consensus 5 ~~~a~~pdG~l~v~e~-------------~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAER-------------SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp EEEEEETTSCEEEEET-------------TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred eEEEEeCCCcEEEEeC-------------CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 3678999988776553 6899999988886 33332 1111135899999984 66655444
No 482
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.89 E-value=2.6e+02 Score=29.65 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=42.6
Q ss_pred EEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCc--eeEEEEecCCCCCEEEEEecCCCeEEEEEeCCeEEEE
Q 005559 39 ACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV--LISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRY 113 (691)
Q Consensus 39 A~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~--ll~si~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly 113 (691)
.+||+|..+=.+-++. ++..+.|-||+..-. .+..++.+. =-.+.|-|.+||+++++..-| |..-
T Consensus 120 vfs~dG~~LYATEndf-------d~~rGViGvYd~r~~fqrvgE~~t~G--iGpHev~lm~DGrtlvvanGG-Ieth 186 (366)
T COG3490 120 VFSPDGRLLYATENDF-------DPNRGVIGVYDAREGFQRVGEFSTHG--IGPHEVTLMADGRTLVVANGG-IETH 186 (366)
T ss_pred ccCCCCcEEEeecCCC-------CCCCceEEEEecccccceecccccCC--cCcceeEEecCCcEEEEeCCc-eecc
Confidence 3778887663333221 247899999998643 344455444 358889999999998877655 4433
No 483
>PRK13614 lipoprotein LpqB; Provisional
Probab=21.86 E-value=1.3e+03 Score=26.97 Aligned_cols=161 Identities=11% Similarity=0.075 Sum_probs=0.0
Q ss_pred EEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCC---eEEEEecCCCceEEEcCCCCcCCCCc
Q 005559 102 ICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN---RYFCMADFATMKVCELARPEVEELPH 178 (691)
Q Consensus 102 v~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~---~~~~v~n~~~~~~~~l~~~~l~~~~~ 178 (691)
..+..|| .++...|.-.. ............+..+.++.+|..++..++ .++.++.-...+...=..
T Consensus 315 l~~~~~G--~l~~~~~~~~~-pv~g~~g~~~~~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~~g~-------- 383 (573)
T PRK13614 315 QIGVSDG--ELVRYENGQIS-PLPDIQSVAGLGPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALTSGS-------- 383 (573)
T ss_pred eEEecCC--eEEEecCCCcc-cCCCccCcCcccccceeecCCCceEEEecCCCcEEEEecCCCcceeeecCC--------
Q ss_pred eEEEecCCcCCCCCeEEEEEeCC--eEEEEecCCc---------c----cccCCCeeEEEECCCCCEEEEEeeC-Ce--E
Q 005559 179 CVAVIEPKYTMTGSVEVLIGTDA--GILMLDEDGV---------Q----KVDDTLSQKMAVSPNGNFVACFTHD-GR--L 240 (691)
Q Consensus 179 ~w~vi~~~~S~d~~~~vl~s~d~--ti~l~d~~~~---------~----~~~~~~i~~Ia~SpnG~~IAl~t~d-g~--i 240 (691)
.+..|+|+.+| .+=....++ .|.....++. . -+....|+.+.+|++|-.+|...++ |. |
T Consensus 384 --~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V 460 (573)
T PRK13614 384 --TLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRV 460 (573)
T ss_pred --CccCCcccCCC-CEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEE
Q ss_pred E---EEecCCCC--ceeecc-CCCCCCCCeEEEecCceEEEE
Q 005559 241 V---VNNTNFSS--PVIDES-CESALPPEQIAWCGMDSVLLY 276 (691)
Q Consensus 241 ~---I~ssd~~~--~l~e~d-~~~~~~p~q~~WCG~davvl~ 276 (691)
+ |....-+. .+.+.- ......+.++.|-+++++++.
T Consensus 461 ~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~ 502 (573)
T PRK13614 461 QVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVT 502 (573)
T ss_pred EEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEE
No 484
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=21.71 E-value=1.5e+03 Score=27.65 Aligned_cols=146 Identities=10% Similarity=0.127 Sum_probs=75.4
Q ss_pred EecCCCe-EEEEEeCCeEEEEeCCCCeec---c-----ccCCCccccccCeEEEEEeC--CceEEEecCCeEEEEecCCC
Q 005559 94 SWSEDQT-LICVVQDGTVYRYNIHAELIE---P-----NASMGKECFEENVVECVFWG--NGVVCVTEANRYFCMADFAT 162 (691)
Q Consensus 94 ~fs~de~-Lv~v~~DGtV~ly~~~G~~~~---~-----sl~~~~~~~~~~V~~~~~~~--~G~vllt~~~~~~~v~n~~~ 162 (691)
.+.++|. +++++.+|-++..+.. ++.. . ..... + .+.+..+.... +-++++|..|++|.+...+=
T Consensus 491 dli~~e~~~vllS~~GyIKri~~~-~~~~~~~~~~g~s~~klK-e--~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~I 566 (800)
T TIGR01063 491 DLIARENVVVTLSHNGYVKRVPVS-AYRLQKRGGKGVSGADMK-D--DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQI 566 (800)
T ss_pred hccCcceEEEEEcCCCEEEecchh-hhhhhcccCcCccccccC-C--CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhC
Confidence 3455666 6789999999877553 1100 0 00000 1 23455544433 55888999999998855332
Q ss_pred ceEEEcC-CC------CcCCCCceEEEec-CCcCCCCCeEEEEEeCCeEEEEecCCcc----------cc-cCCCeeEEE
Q 005559 163 MKVCELA-RP------EVEELPHCVAVIE-PKYTMTGSVEVLIGTDAGILMLDEDGVQ----------KV-DDTLSQKMA 223 (691)
Q Consensus 163 ~~~~~l~-~~------~l~~~~~~w~vi~-~~~S~d~~~~vl~s~d~ti~l~d~~~~~----------~~-~~~~i~~Ia 223 (691)
|....-. .. .+...-..-.+++ ..+ .++...++++.+|-++..+.++-. .. ....+..+.
T Consensus 567 P~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~-~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~ 645 (800)
T TIGR01063 567 PEASRTAKGKPIVNLLPLQPDERITAILSVKEF-DDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVR 645 (800)
T ss_pred cCCCcCCCCcCHHHhccCCCCCeEEEEEEeccC-CCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEE
Confidence 2110000 00 0111111222222 123 245678888888888887665322 01 123344444
Q ss_pred ECCCCCEEEEEeeCCeEEEEe
Q 005559 224 VSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 224 ~SpnG~~IAl~t~dg~i~I~s 244 (691)
...+...|.++|.+|.+....
T Consensus 646 ~~~~~d~lll~Ts~Gr~~r~~ 666 (800)
T TIGR01063 646 LTSGDDEVMLGSKNGKAVRFP 666 (800)
T ss_pred EeCCCCEEEEEECCCcEEEEE
Confidence 444446788888888776554
No 485
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=21.25 E-value=1.4e+03 Score=27.17 Aligned_cols=71 Identities=17% Similarity=0.277 Sum_probs=39.2
Q ss_pred cCeEEEEEe-CCceEEEecCCeE--EEEecCCCceEEEcCCCCcCCC-CceEEEecCCcCCCCCeEEEEEeCCeEEEEec
Q 005559 133 ENVVECVFW-GNGVVCVTEANRY--FCMADFATMKVCELARPEVEEL-PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDE 208 (691)
Q Consensus 133 ~~V~~~~~~-~~G~vllt~~~~~--~~v~n~~~~~~~~l~~~~l~~~-~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~ 208 (691)
.+..+++|. ..|....-.+..+ |.+.++.-.+...++.. +... ...+++.+|+ .--++++.+++||++|.
T Consensus 231 ~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~i-i~~~~~~~vSl~~~s-----~nRvLLs~~nkIyLld~ 304 (670)
T PF10395_consen 231 FGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSI-IDKESDDLVSLKPPS-----PNRVLLSVNNKIYLLDL 304 (670)
T ss_pred CCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechh-hccccccceEeecCC-----CCeEEEEcCCEEEEEee
Confidence 445677774 5888777655543 33334322222223311 1111 2455665542 23478999999999987
Q ss_pred C
Q 005559 209 D 209 (691)
Q Consensus 209 ~ 209 (691)
.
T Consensus 305 ~ 305 (670)
T PF10395_consen 305 K 305 (670)
T ss_pred h
Confidence 6
No 486
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.01 E-value=1.2e+03 Score=26.30 Aligned_cols=104 Identities=7% Similarity=0.013 Sum_probs=54.9
Q ss_pred CCCeEEEEcC-CCceeEEEEecCC----CCCEEE--EEecCCCeEEEEEeCCeEEEEeC-CCCee-ccccCCCccccccC
Q 005559 64 ALRKLRIFNS-AGVLISETVWKNP----GGRLIG--MSWSEDQTLICVVQDGTVYRYNI-HAELI-EPNASMGKECFEEN 134 (691)
Q Consensus 64 ~~~~I~Iys~-sG~ll~si~~~~~----~~~Iv~--~~fs~de~Lv~v~~DGtV~ly~~-~G~~~-~~sl~~~~~~~~~~ 134 (691)
.++.+.-++. +|+++++...... ...++. +....++.+++.+.+|.|.-+|. .|+.+ ++........ ...
T Consensus 69 ~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~-~~~ 147 (488)
T cd00216 69 SHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPP-GYT 147 (488)
T ss_pred CCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCc-ceE
Confidence 4567777775 7998888765431 001111 11111266777888999999988 58864 2232211000 000
Q ss_pred eEE-EEEeCCceEEEec----------CCeEEEEecCCCceEEEcC
Q 005559 135 VVE-CVFWGNGVVCVTE----------ANRYFCMADFATMKVCELA 169 (691)
Q Consensus 135 V~~-~~~~~~G~vllt~----------~~~~~~v~n~~~~~~~~l~ 169 (691)
|.. ..++ +|++++.. ++.++.++-..+...|+..
T Consensus 148 i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 148 MTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred ecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 111 1222 36666543 3457777655567777763
No 487
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.29 E-value=1.3e+03 Score=29.39 Aligned_cols=184 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred EEEEecCCCeEEEEEeCCeEEEEeCCCCeec--------cccCCCccccccCeEEEEEeC--CceEEEecCCeEEEEecC
Q 005559 91 IGMSWSEDQTLICVVQDGTVYRYNIHAELIE--------PNASMGKECFEENVVECVFWG--NGVVCVTEANRYFCMADF 160 (691)
Q Consensus 91 v~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~--------~sl~~~~~~~~~~V~~~~~~~--~G~vllt~~~~~~~v~n~ 160 (691)
+-++=+....|.|+..-. +.++...++... .++.-+.+ -.-|.-+.+.+ .-.++.|.++.+++.-|+
T Consensus 55 l~Fa~~nsk~L~vfgtkn-lLi~~it~D~~n~~Vd~~~~~t~~v~k~--~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~ 131 (1405)
T KOG3630|consen 55 LFFAASNSKSLAVFGTKN-LLIDHITSDSTNSLVDADENLTFKVEKE--IPIVIFVCFHDATDSVVVSTSNGEAVYSFDL 131 (1405)
T ss_pred eEEEecCCcceeeecccc-ceeecccccccccccccccccceeeecc--ccceEEEeccCCceEEEEEecCCceEEEEeh
Q ss_pred C------CceEEEcCCCCcC----CCCceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc---cccCCCeeEEEECCC
Q 005559 161 A------TMKVCELARPEVE----ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ---KVDDTLSQKMAVSPN 227 (691)
Q Consensus 161 ~------~~~~~~l~~~~l~----~~~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~---~~~~~~i~~Ia~Spn 227 (691)
. ......|++.... ..+.+..+.|-- ++.....+.+.+=.|..++..... ..-....+.+++||.
T Consensus 132 ~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v--p~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSpr 209 (1405)
T KOG3630|consen 132 EEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV--PLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPR 209 (1405)
T ss_pred HhhhhhhhhhccccccccchhccccccccccccCCc--cchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccc
Q ss_pred CCEEEEEeeCCeEEEEecCCC--CceeeccCCCCCCCCeEEEecCceEEEEEcC
Q 005559 228 GNFVACFTHDGRLVVNNTNFS--SPVIDESCESALPPEQIAWCGMDSVLLYWND 279 (691)
Q Consensus 228 G~~IAl~t~dg~i~I~ssd~~--~~l~e~d~~~~~~p~q~~WCG~davvl~~~~ 279 (691)
|+.++.+-..|++.-+.-.+. ..+-+-.......+..+.|.+.---++.+..
T Consensus 210 GKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n 263 (1405)
T KOG3630|consen 210 GKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYGN 263 (1405)
T ss_pred cceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEecc
Done!