Query 005559
Match_columns 691
No_of_seqs 184 out of 350
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 19:07:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005559.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2065-2069//hhsearch_pdb/005559hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 1.0 1 1 154.7 31.0 275 34-333 18-351 (577)
2 2ymu_A WD-40 repeat protein; u 1.0 1 1 154.0 32.6 58 187-244 352-413 (577)
3 1vyh_C Platelet-activating fac 1.0 1 1 142.8 31.5 251 35-312 111-408 (410)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 141.5 29.4 150 34-209 617-773 (1249)
5 3fm0_A Protein CIAO1; WDR39,SG 1.0 1 1 140.5 26.6 265 34-323 18-343 (345)
6 1nr0_A Actin interacting prote 1.0 1 1 140.5 29.8 259 36-321 63-361 (611)
7 3dm0_A Maltose-binding peripla 1.0 1 1 137.6 32.3 257 34-314 384-692 (694)
8 1nr0_A Actin interacting prote 1.0 1 1 137.4 33.6 166 66-245 39-219 (611)
9 1got_B GT-beta; complex (GTP-b 1.0 1 1 137.0 33.2 254 34-312 57-340 (340)
10 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 136.2 25.3 111 34-163 659-775 (1249)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=154.69 Aligned_cols=275 Identities=16% Similarity=0.235 Sum_probs=173.9
Q ss_pred CCCEEEECCCCCEEEEEECCCHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEE-EEEEECCEEEE
Q ss_conf 98889995899838999558313433101479709999199962579770489998799975379929-99992884999
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYR 112 (691)
Q Consensus 34 ~~~~vA~sp~GG~IAi~r~~~k~~~~~~~~~~~~I~Iys~sG~ll~si~~~~~~~~Iv~l~fs~de~L-vvv~~dGtV~i 112 (691)
....+|++|+|..||+.. .+++|+||+.+|+++.++..|. +.|.++.|+||+++ +++..||++++
T Consensus 18 ~V~~~a~spdg~~las~~------------~d~~v~iWd~~~~~~~~l~gh~--~~V~~l~fspdg~~las~~~d~~i~v 83 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASAS------------DDKTVKLWNRNGQLLQTLTGHS--SSVWGVAFSPDGQTIASASDDKTVKL 83 (577)
T ss_dssp CEEEEEECTTSSCEEEEE------------TTSEEEEECTTSCEEEEEECCS--SCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCEEEEEECCC--CCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 579999989989999993------------8998999979997899996898--99899999899999999969897999
Q ss_pred EECCCCEECCCCCCCCCCCCCCEEEEEEECCCEEEEECCC-EEEEEECCCCCEEEECCCC--------------------
Q ss_conf 9089870023468986544368499999578238996188-2999952898648774899--------------------
Q 005559 113 YNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMKVCELARP-------------------- 171 (691)
Q Consensus 113 yd~~G~~~~~sl~~~~~~~~~~V~~a~i~~~G~vilt~~~-~~~~v~n~~~~~~~~l~~~-------------------- 171 (691)
||..|+... .+..+ ...|..+.|.++|..+++.+. ....+++............
T Consensus 84 Wd~~~~~~~-~~~~~----~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 158 (577)
T 2ymu_A 84 WNRNGQLLQ-TLTGH----SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 158 (577)
T ss_dssp EETTSCEEE-EECCC----SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EECCCCEEE-EEECC----CCCEEEEEECCCCCEEEEECCCCCEEECCCCCCEEEECCCCCCCEEEEEEECCCCCCEECC
T ss_conf 989997899-99789----9988999998999989998079833520235520011047777435554203776320025
Q ss_pred -------------CC---C-CCCCEEEEECCCCCCCCCEEEEEEECCEEEEEECCCCC----CCCCCCEEEEEECCCCCE
Q ss_conf -------------86---7-99936999468857899769999728819999369842----125998039998799978
Q 005559 172 -------------EV---E-ELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNF 230 (691)
Q Consensus 172 -------------~l---~-~~~~~w~vi~~~~S~~~~~~vlls~d~ti~~~d~~~~~----~~~~~~i~~Ia~SpnG~~ 230 (691)
.. . .....+.+ .+++++...+..+.+++|++|+.++.. ..+.+++..+++||+|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 159 DDKTVKLWNRNGQLLQTLTGHSSSVWGV---AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 235 (577)
T ss_dssp TTSEEEEECTTSCEEEEEECCSSCEEEE---EECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred CCCCEECCCCCEEEEEECCCCCCCEEEE---EECCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 5531000000000000026877635665---4169977899985999899994999689999468898899999799999
Q ss_pred EEEEEECCEEEEEECCCCCCEEECCCCCCCCCCEEEEEC---------CCEEEEEECC---E-EEEECCCCC--CEEEEC
Q ss_conf 899851881999935999860110478889997379965---------8628998758---6-799808998--447303
Q 005559 231 VACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCG---------MDSVLLYWND---M-LVMVAPQAE--PVQYFY 295 (691)
Q Consensus 231 iAl~t~dg~i~I~ssd~~~~l~e~d~~~~~~p~~l~WCG---------~d~vvl~~~~---~-i~ligp~~~--~i~f~~ 295 (691)
++..+.+|.+.+|+.+ .+.+..+..+ ...+..+.|.. +|..+..|+. . -.+.|+.+. .+.|..
T Consensus 236 l~~~~~d~~i~~w~~~-~~~~~~~~~~-~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~ 313 (577)
T 2ymu_A 236 IASASDDKTVKLWNRN-GQLLQTLTGH-SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP 313 (577)
T ss_dssp EEEEETTSCEEEECTT-SCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECT
T ss_pred EEEEECCCEEEEEECC-CCEEEEEECC-CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf 9999189989999599-9799998068-8987999996899999999599979999489958999706889769999999
Q ss_pred CCCEEEEECCCC-EEEEECCCCEEEECCCHHHHHHCCCC
Q ss_conf 998288532891-69990675300011451144310257
Q 005559 296 DEPLVLIPECDG-VRILSNSSMEFLQRVPASTEQIFAIG 333 (691)
Q Consensus 296 ~~~~~l~~E~DG-iRIit~~~~~~l~~Vp~~~~~if~ig 333 (691)
++..++....|| +|++..+..+ +..++.+...|..+.
T Consensus 314 ~~~~l~t~~~d~~i~~w~~~~~~-~~~~~~~~~~v~~~~ 351 (577)
T 2ymu_A 314 DGQTIASASDDKTVKLWNRNGQH-LQTLTGHSSSVWGVA 351 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTSCE-EEEECCCSSCEEEEE
T ss_pred CCCEEEEEECCCEEEEEECCCCE-EEEEECCCCCEEEEE
T ss_conf 99999999699959999699972-578747889779999
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=153.96 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=23.4
Q ss_pred CCCCCCEEEEEEECCEEEEEECCCCC----CCCCCCEEEEEECCCCCEEEEEEECCEEEEEE
Q ss_conf 57899769999728819999369842----12599803999879997889985188199993
Q 005559 187 YTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNN 244 (691)
Q Consensus 187 ~S~~~~~~vlls~d~ti~~~d~~~~~----~~~~~~i~~Ia~SpnG~~iAl~t~dg~i~I~s 244 (691)
+++++...+..+.++++.+|+.++.. ..+.+++..+++||+|+++|..+.++.+.+|+
T Consensus 352 ~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~ 413 (577)
T 2ymu_A 352 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 98999999999699989999089978998527889748999989999999994999899996
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=142.78 Aligned_cols=251 Identities=14% Similarity=0.171 Sum_probs=169.5
Q ss_pred CCEEEECCCCCEEEEEECCCHHHHHHCCCCCCEEEEECC-CCCEEEEEEECCCCCCEEEEEECCCCEE-EEEEECCEEEE
Q ss_conf 888999589983899955831343310147970999919-9962579770489998799975379929-99992884999
Q 005559 35 RNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYR 112 (691)
Q Consensus 35 ~~~vA~sp~GG~IAi~r~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~l~fs~de~L-vvv~~dGtV~i 112 (691)
...++++|+|..+|... .+++|+||+. .|+.+.++..|. +.|.++.|++++.+ ++.+.||+|++
T Consensus 111 V~~~~~~p~~~~l~s~s------------~Dg~i~vwd~~~~~~~~~l~~h~--~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSAS------------EDATIKVWDYETGDFERTLKGHT--DSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp EEEEEECSSSSEEEEEE------------SSSCEEEEETTTCCCCEEECCCS--SCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred EEEEEECCCCCEEEEEE------------CCCEEEEEECCCCCEEEEEECCC--CCEEEEEECCCCCEEEEEECCCEEEE
T ss_conf 89999969999899993------------89859999899993778881667--86878998599999999918981999
Q ss_pred EECCC-CEECCCCCCCCCCCCCCEEEEEEECCCEEEEECC-CEEEEEECCCCCE-EEECCCCCCCCCCCEEEEECCCCCC
Q ss_conf 90898-7002346898654436849999957823899618-8299995289864-8774899867999369994688578
Q 005559 113 YNIHA-ELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMK-VCELARPEVEELPHCVAVIEPKYTM 189 (691)
Q Consensus 113 yd~~G-~~~~~sl~~~~~~~~~~V~~a~i~~~G~vilt~~-~~~~~v~n~~~~~-~~~l~~~~l~~~~~~w~vi~~~~S~ 189 (691)
||+.+ +... ++..+ ...|..+.+.++|-.+++++ ...+.+|+..... ...+.. +.....++ .+++
T Consensus 177 wd~~~~~~~~-~~~~h----~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~----h~~~v~~~---~~~~ 244 (410)
T 1vyh_C 177 WDFQGFECIR-TMHGH----DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG----HREWVRMV---RPNQ 244 (410)
T ss_dssp EETTSSCEEE-CCCCC----SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC----CSSCEEEE---EECT
T ss_pred EECCCCCEEE-EECCC----CCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEEC----CCCCEEEE---EECC
T ss_conf 9589982669-98289----99778999967999999996899699998999948999927----88628999---9989
Q ss_pred CCCEEEEEEECCEEEEEECCCCC-----CCCCCCEEEEEECCC--------------------CCEEEEEEECCEEEEEE
Q ss_conf 99769999728819999369842-----125998039998799--------------------97889985188199993
Q 005559 190 TGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPN--------------------GNFVACFTHDGRLVVNN 244 (691)
Q Consensus 190 ~~~~~vlls~d~ti~~~d~~~~~-----~~~~~~i~~Ia~Spn--------------------G~~iAl~t~dg~i~I~s 244 (691)
++...+..+.|++|.+|+..... ..+.+++..++++|+ |.+++..+.||++.+|+
T Consensus 245 ~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEE
T ss_conf 99999999189909999898974366733787458999985865543101212555556678888999993898499998
Q ss_pred CCCCCCEEECCCCCCCCCCEEEE---------ECCCEEEEEECC-----EEEEECCCCC--CEEEECCCCEEEEECCCC-
Q ss_conf 59998601104788899973799---------658628998758-----6799808998--447303998288532891-
Q 005559 245 TNFSSPVIDESCESALPPEQIAW---------CGMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG- 307 (691)
Q Consensus 245 sd~~~~l~e~d~~~~~~p~~l~W---------CG~d~vvl~~~~-----~i~ligp~~~--~i~f~~~~~~~l~~E~DG- 307 (691)
....+.+..+..+ ...+..+.| +|.|..+..|+- .-.+-|+.+. .+.|..++..++....||
T Consensus 325 ~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~ 403 (410)
T 1vyh_C 325 VSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403 (410)
T ss_dssp TTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred CCCCCEEEEEECC-CCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 8999669999778-885899999499899999959792999989999068998477786899998289999999927994
Q ss_pred EEEEE
Q ss_conf 69990
Q 005559 308 VRILS 312 (691)
Q Consensus 308 iRIit 312 (691)
+|||.
T Consensus 404 i~vW~ 408 (410)
T 1vyh_C 404 VKVWE 408 (410)
T ss_dssp EEEEC
T ss_pred EEEEE
T ss_conf 89973
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=141.47 Aligned_cols=150 Identities=14% Similarity=0.189 Sum_probs=87.3
Q ss_pred CCCEEEECCCCCEEEEEECCCHHHHHHCCCCCCEEEEECC-CCCEEEEEEECCCCCCEEEEEECCCCEE-EEEEECCEEE
Q ss_conf 9888999589983899955831343310147970999919-9962579770489998799975379929-9999288499
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVY 111 (691)
Q Consensus 34 ~~~~vA~sp~GG~IAi~r~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~l~fs~de~L-vvv~~dGtV~ 111 (691)
....++++|+|..+|+.. .+++|+||+. +|+.+.++..|. +.|.++.|+|++.+ ++.+.||+|+
T Consensus 617 ~v~~~~~s~~~~~l~s~~------------~d~~i~vw~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCG------------ADKTLQVFKAETGEKLLDIKAHE--DEVLCCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCCEEEEECCCC--CCEEEEEEECCCCEEEEEECCCEEE
T ss_conf 489999879999899994------------88949999989997888760677--7789999926999899981899599
Q ss_pred EEECC-CCEECCCCCCCCCCCCCCEEEEEEEC--CCEEEEECC-CEEEEEECCCCCE-EEECCCCCCCCCCCEEEEECCC
Q ss_conf 99089-87002346898654436849999957--823899618-8299995289864-8774899867999369994688
Q 005559 112 RYNIH-AELIEPNASMGKECFEENVVECVFWG--NGVVCVTEA-NRYFCMADFATMK-VCELARPEVEELPHCVAVIEPK 186 (691)
Q Consensus 112 iyd~~-G~~~~~sl~~~~~~~~~~V~~a~i~~--~G~vilt~~-~~~~~v~n~~~~~-~~~l~~~~l~~~~~~w~vi~~~ 186 (691)
+||+. |+... .+..+ ...|..+.|.+ ++..+++++ .....+|+..... ...+.. +....+++ .
T Consensus 683 vwd~~~~~~~~-~~~~~----~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~----h~~~v~~~---~ 750 (1249)
T 3sfz_A 683 IWDSATGKLVH-TYDEH----SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG----HTNSVNHC---R 750 (1249)
T ss_dssp EEETTTCCEEE-EEECC----SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC----CSSCEEEE---E
T ss_pred EEECCCCCEEE-EECCC----CCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHEECC----CCCCEEEE---E
T ss_conf 98779993689-99589----9737999984089965999980897099998999634220127----77978899---9
Q ss_pred CCCCCCEEEEEEECCEEEEEECC
Q ss_conf 57899769999728819999369
Q 005559 187 YTMTGSVEVLIGTDAGILMLDED 209 (691)
Q Consensus 187 ~S~~~~~~vlls~d~ti~~~d~~ 209 (691)
|++++...+..+.|++|.+|+..
T Consensus 751 ~sp~~~~l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 751 FSPDDELLASCSADGTLRLWDVR 773 (1249)
T ss_dssp ECSSTTEEEEEESSSEEEEEEGG
T ss_pred EECCCCEEEEEECCCEEEEEECC
T ss_conf 92599989999789859999688
No 5
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=140.53 Aligned_cols=265 Identities=17% Similarity=0.195 Sum_probs=175.6
Q ss_pred CCCEEEECCCCCEEEEEECCCHHHHHHCCCCCCEEEEECCCCC-EEEEE---EECCCCCCEEEEEECCCCE-EEEEEECC
Q ss_conf 9888999589983899955831343310147970999919996-25797---7048999879997537992-99999288
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGV-LISET---VWKNPGGRLIGMSWSEDQT-LICVVQDG 108 (691)
Q Consensus 34 ~~~~vA~sp~GG~IAi~r~~~k~~~~~~~~~~~~I~Iys~sG~-ll~si---~~~~~~~~Iv~l~fs~de~-Lvvv~~dG 108 (691)
..+.++++|+|..+|+.. .+++|+||+..+. .+... ..|. +.|.++.|+|++. |++.+.||
T Consensus 18 ~v~~l~~sp~g~~las~~------------~D~~i~iw~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCG------------GDRRIRIWGTEGDSWICKSVLSEGHQ--RTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEECTTSSCEEEEE------------TTSCEEEEEEETTEEEEEEEECSSCS--SCEEEEEECTTSSEEEEEETTS
T ss_pred CEEEEEECCCCCEEEEEC------------CCCEEEEEECCCCCCEEEEEECCCCC--CCEEEEEECCCCCEEEEEECCC
T ss_conf 679999999999999981------------89839998747985234355032468--8689999979999999998899
Q ss_pred EEEEEECC-CCE-ECCCCCCCCCCCCCCEEEEEEECCCEEEEECCC-EEEEEECCCCCE----EEECCCCCCCCCCCEEE
Q ss_conf 49999089-870-023468986544368499999578238996188-299995289864----87748998679993699
Q 005559 109 TVYRYNIH-AEL-IEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATMK----VCELARPEVEELPHCVA 181 (691)
Q Consensus 109 tV~iyd~~-G~~-~~~sl~~~~~~~~~~V~~a~i~~~G~vilt~~~-~~~~v~n~~~~~----~~~l~~~~l~~~~~~w~ 181 (691)
++++|+.. ++. ....+..+ ...|..+.+.++|..+++++. ....+|++.... ...+.. +.....+
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h----~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----h~~~v~~ 155 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGH----ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS----HTQDVKH 155 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCC----SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC----CCSCEEE
T ss_pred CEEEEECCCCCEEEEEECCCC----CCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCCEEEEEEECC----CCCCEEE
T ss_conf 099998169976998981378----78826999928999999998999099988789998089999527----6788689
Q ss_pred EECCCCCCCCCEEEEEEECCEEEEEECCCCC-------CCCCCCEEEEEECCCCCEEEEEEECCEEEEEECCCCCC----
Q ss_conf 9468857899769999728819999369842-------12599803999879997889985188199993599986----
Q 005559 182 VIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ-------KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSP---- 250 (691)
Q Consensus 182 vi~~~~S~~~~~~vlls~d~ti~~~d~~~~~-------~~~~~~i~~Ia~SpnG~~iAl~t~dg~i~I~ssd~~~~---- 250 (691)
+ .|++++...+..+.|++|.+|+..... ..+.+++..+++||+|+++|..+.||++.+|+......
T Consensus 156 ~---~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~ 232 (345)
T 3fm0_A 156 V---VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV 232 (345)
T ss_dssp E---EECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCC
T ss_pred E---EECCCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCCC
T ss_conf 9---9999999999994898099999369977999992577785679999999998999808992999515368887650
Q ss_pred -----------EEECCCCCCCCCCEEEEECC---------CEEEEEECC---------EEEE-----ECCCCC--CEEEE
Q ss_conf -----------01104788899973799658---------628998758---------6799-----808998--44730
Q 005559 251 -----------VIDESCESALPPEQIAWCGM---------DSVLLYWND---------MLVM-----VAPQAE--PVQYF 294 (691)
Q Consensus 251 -----------l~e~d~~~~~~p~~l~WCG~---------d~vvl~~~~---------~i~l-----igp~~~--~i~f~ 294 (691)
+..+..........+.|+.+ |..+-.|+. ...+ -|+.+. .+.|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 312 (345)
T 3fm0_A 233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN 312 (345)
T ss_dssp CCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC
T ss_pred EEECCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEE
T ss_conf 56336786333688147788847788991579999997479818999927878863025898740044546867574783
Q ss_pred CCCC-EEEEECCCC-EEEEECCCCEEEECCC
Q ss_conf 3998-288532891-6999067530001145
Q 005559 295 YDEP-LVLIPECDG-VRILSNSSMEFLQRVP 323 (691)
Q Consensus 295 ~~~~-~~l~~E~DG-iRIit~~~~~~l~~Vp 323 (691)
++++ .++....|| ||+|....-.-+.+-|
T Consensus 313 p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 313 PKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp SSSTTEEEEEETTSCEEEEEECC--------
T ss_pred CCCCEEEEECCCCCCEEEEEECCCCCCCCCC
T ss_conf 7995599982799819999844899833245
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=140.46 Aligned_cols=259 Identities=14% Similarity=0.140 Sum_probs=124.3
Q ss_pred CEEEECCCCCEEEEEECCCHHHHHHCCCCCCEEEEECC-CC--CEEEEEEECCCCCCEEEEEECCCCEEE-EEEEC----
Q ss_conf 88999589983899955831343310147970999919-99--625797704899987999753799299-99928----
Q 005559 36 NKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AG--VLISETVWKNPGGRLIGMSWSEDQTLI-CVVQD---- 107 (691)
Q Consensus 36 ~~vA~sp~GG~IAi~r~~~k~~~~~~~~~~~~I~Iys~-sG--~ll~si~~~~~~~~Iv~l~fs~de~Lv-vv~~d---- 107 (691)
..++++|+|..||+.. .+++|+||+. .| .+..++..+. +.|.++.|+|+++.+ ++..+
T Consensus 63 ~~~~~spdg~~lasg~------------~d~~v~lWd~~~~~~~~~~~~~~~~--~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 63 TVAKTSPSGYYCASGD------------VHGNVRIWDTTQTTHILKTTIPVFS--GPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp EEEEECTTSSEEEEEE------------TTSEEEEEESSSTTCCEEEEEECSS--SCEEEEEECTTSCEEEEEECCSSCS
T ss_pred EEEEECCCCCEEEEEE------------CCCCEEEEECCCCCCEEEEEECCCC--CCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 9999999996899994------------8997899489898415667622557--8448999899999799998997736
Q ss_pred CEEEEEECCCCEECCCCCCCCCCCCCCEEEEEEECCCE-EEEECC-CEEEEEECCCCCEE-EECCCCCCCCCCCEEEEEC
Q ss_conf 84999908987002346898654436849999957823-899618-82999952898648-7748998679993699946
Q 005559 108 GTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGV-VCVTEA-NRYFCMADFATMKV-CELARPEVEELPHCVAVIE 184 (691)
Q Consensus 108 GtV~iyd~~G~~~~~sl~~~~~~~~~~V~~a~i~~~G~-vilt~~-~~~~~v~n~~~~~~-~~l~~~~l~~~~~~w~vi~ 184 (691)
|+|++|+. |+... .+..+ ...|..+.|.++|- .+++++ .....+|+....+. ..+.. +....+++
T Consensus 129 ~~v~~wd~-~~~~~-~l~gh----~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~----H~~~V~~v-- 196 (611)
T 1nr0_A 129 GHVFLFDT-GTSNG-NLTGQ----ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE----HTKFVHSV-- 196 (611)
T ss_dssp EEEEETTT-CCBCB-CCCCC----SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC----CSSCEEEE--
T ss_pred EEEEEEEC-CCCCC-EECCC----CCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECC----CCCCEEEE--
T ss_conf 69999638-99763-25478----898369998899982999992898099997999757665200----25716999--
Q ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCC------C------CCCCCEEEEEECCCCCEEEEEEECCEEEEEECCCCCCEE
Q ss_conf 8857899769999728819999369842------1------259980399987999788998518819999359998601
Q 005559 185 PKYTMTGSVEVLIGTDAGILMLDEDGVQ------K------VDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVI 252 (691)
Q Consensus 185 ~~~S~~~~~~vlls~d~ti~~~d~~~~~------~------~~~~~i~~Ia~SpnG~~iAl~t~dg~i~I~ssd~~~~l~ 252 (691)
.|++++...+..+.|++|++|+..... . .+.+++..+++||+|+++|..+.|+++.+|+..-.+.+.
T Consensus 197 -~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 197 -RYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp -EECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred -EECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEE
T ss_conf -9979999899998999199988999828665136643235667878999997999999999089809999688870134
Q ss_pred ECCCCC--CCCCCEEEEECCCEEE-------EEECC-----EEEEECCCCC--CEEEECCCCEEEEECCCC-EEEEECCC
Q ss_conf 104788--8999737996586289-------98758-----6799808998--447303998288532891-69990675
Q 005559 253 DESCES--ALPPEQIAWCGMDSVL-------LYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILSNSS 315 (691)
Q Consensus 253 e~d~~~--~~~p~~l~WCG~d~vv-------l~~~~-----~i~ligp~~~--~i~f~~~~~~~l~~E~DG-iRIit~~~ 315 (691)
.+.... ......+.|.|+--+. ..|+- ...+.|+.+. .+.|..++..++....|| +|+|....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred EECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC
T ss_conf 40478876640689997388799995899689996889974469837888889999918999899995898499997887
Q ss_pred CEEEEC
Q ss_conf 300011
Q 005559 316 MEFLQR 321 (691)
Q Consensus 316 ~~~l~~ 321 (691)
.+..+.
T Consensus 356 ~~~~~~ 361 (611)
T 1nr0_A 356 GISNRV 361 (611)
T ss_dssp CCEEEC
T ss_pred CCEEEE
T ss_conf 925632
No 7
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=1.00 E-value=1 Score=137.63 Aligned_cols=257 Identities=11% Similarity=0.106 Sum_probs=172.1
Q ss_pred CCCEEEECCCCC-EEEEEECCCHHHHHHCCCCCCEEEEECCC------CCEEEEEEECCCCCCEEEEEECCCCEE-EEEE
Q ss_conf 988899958998-38999558313433101479709999199------962579770489998799975379929-9999
Q 005559 34 SRNKVACAPFGG-PIAVIRDDSKIVQLYAESALRKLRIFNSA------GVLISETVWKNPGGRLIGMSWSEDQTL-ICVV 105 (691)
Q Consensus 34 ~~~~vA~sp~GG-~IAi~r~~~k~~~~~~~~~~~~I~Iys~s------G~ll~si~~~~~~~~Iv~l~fs~de~L-vvv~ 105 (691)
....++++|.++ .+|+.+ .|++|+||+.. |....++..|. +.|.++.|++++++ ++.+
T Consensus 384 ~V~~v~~~~~~~~~l~s~s------------~D~~i~~W~~~~~~~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSAS------------RDKSIILWKLTKDDKAYGVAQRRLTGHS--HFVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp CEEEEECCTTCCSEEEEEE------------TTSEEEEEECCCSTTCSCEEEEEEECCS--SCEEEEEECTTSSEEEEEE
T ss_pred EEEEEEECCCCCCEEEEEE------------CCCCEEEEECCCCCCCCCCCCCEECCCC--CCEEEEEECCCCCEEEEEE
T ss_conf 0699986699888899980------------8994899975688755553332425888--8479999979999999980
Q ss_pred ECCEEEEEECC-CCEECCCCCCCCCCCCCCEEEEEEECCCEEEEECC-CEEEEEECCCCCEEEECCCCCCCCCCCEEEEE
Q ss_conf 28849999089-87002346898654436849999957823899618-82999952898648774899867999369994
Q 005559 106 QDGTVYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVI 183 (691)
Q Consensus 106 ~dGtV~iyd~~-G~~~~~sl~~~~~~~~~~V~~a~i~~~G~vilt~~-~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi 183 (691)
.||+|++||+. |+..+ .+..| ...|..+.+.++|-.+++++ .....+|+..+.....+......+.....++
T Consensus 450 ~Dg~v~vwd~~~~~~~~-~~~~h----~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~- 523 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTR-RFVGH----TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV- 523 (694)
T ss_dssp TTSEEEEEETTTTEEEE-EEECC----SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEE-
T ss_pred CCCCEEEEECCCCCCEE-EEECC----CCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCEEECCCCCCCCCCEEEE-
T ss_conf 89928999799995136-88679----9988999990899989999488979999789985404303778887867999-
Q ss_pred CCCCCCCC--CEEEEEEECCEEEEEECCCCC-----CCCCCCEEEEEECCCCCEEEEEEECCEEEEEECCCCCCEEECCC
Q ss_conf 68857899--769999728819999369842-----12599803999879997889985188199993599986011047
Q 005559 184 EPKYTMTG--SVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESC 256 (691)
Q Consensus 184 ~~~~S~~~--~~~vlls~d~ti~~~d~~~~~-----~~~~~~i~~Ia~SpnG~~iAl~t~dg~i~I~ssd~~~~l~e~d~ 256 (691)
.|++++ ...+..+.|++|.+||..... ..+.+++..+++||+|+++|..+.||+|.+|+..-.+.+..+..
T Consensus 524 --~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~ 601 (694)
T 3dm0_A 524 --RFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601 (694)
T ss_dssp --EECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred --EEECCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEECC
T ss_conf --991798865599996898599998999927899867888888999918989899995899499998899956788338
Q ss_pred CCCCCCCEEEEECCCEE--------EEEECC---E-EEEE--------------CCC--------CCCEEEECCCCEEEE
Q ss_conf 88899973799658628--------998758---6-7998--------------089--------984473039982885
Q 005559 257 ESALPPEQIAWCGMDSV--------LLYWND---M-LVMV--------------APQ--------AEPVQYFYDEPLVLI 302 (691)
Q Consensus 257 ~~~~~p~~l~WCG~d~v--------vl~~~~---~-i~li--------------gp~--------~~~i~f~~~~~~~l~ 302 (691)
+ .....+.|+.+... +..|+- . +.-+ ||. ...+.|..++..++.
T Consensus 602 ~--~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s 679 (694)
T 3dm0_A 602 N--SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS 679 (694)
T ss_dssp S--SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred C--CCEEEEEECCCCCEEEEECCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEE
T ss_conf 9--94789998599868999769978999899998733200245653200245664567740477514898689998999
Q ss_pred ECCCC-EEEEECC
Q ss_conf 32891-6999067
Q 005559 303 PECDG-VRILSNS 314 (691)
Q Consensus 303 ~E~DG-iRIit~~ 314 (691)
...|| ||||.-.
T Consensus 680 gs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 680 GYTDGVIRVWGIG 692 (694)
T ss_dssp EETTSEEEEEEC-
T ss_pred ECCCCEEEEEECC
T ss_conf 7589849998535
No 8
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=137.43 Aligned_cols=166 Identities=10% Similarity=0.042 Sum_probs=61.0
Q ss_pred CEEEEECC-CCCEEEEEEECCCCCCEEEEEECCCCEE-EEEEECCEEEEEECC-CCE-ECCCCCCCCCCCCCCEEEEEEE
Q ss_conf 70999919-9962579770489998799975379929-999928849999089-870-0234689865443684999995
Q 005559 66 RKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVYRYNIH-AEL-IEPNASMGKECFEENVVECVFW 141 (691)
Q Consensus 66 ~~I~Iys~-sG~ll~si~~~~~~~~Iv~l~fs~de~L-vvv~~dGtV~iyd~~-G~~-~~~sl~~~~~~~~~~V~~a~i~ 141 (691)
..|.+|+. .|+.+.++..|. +.|.++.|+|++++ ++...||+|++||.. ++. ....+..+ ...|..+.|.
T Consensus 39 ~~v~l~~~~~~~~~~~~~~h~--~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~----~~~v~~v~fs 112 (611)
T 1nr0_A 39 TSVYTVPVGSLTDTEIYTEHS--HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF----SGPVKDISWD 112 (611)
T ss_dssp TEEEEEETTCSSCCEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS----SSCEEEEEEC
T ss_pred CEEEEECCCCCCCCEEECCCC--CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCC----CCCEEEEEEC
T ss_conf 979994578724273765899--8659999999996899994899789948989841566762255----7844899989
Q ss_pred CCCEEEEECCC-----EEEEEECCCCCEEEECCCCCCCCCCCEEEEECCCCCCCCC-EEEEEEECCEEEEEECCCCC---
Q ss_conf 78238996188-----2999952898648774899867999369994688578997-69999728819999369842---
Q 005559 142 GNGVVCVTEAN-----RYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGS-VEVLIGTDAGILMLDEDGVQ--- 212 (691)
Q Consensus 142 ~~G~vilt~~~-----~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~~~~S~~~~-~~vlls~d~ti~~~d~~~~~--- 212 (691)
++|..+++.+. ....+|+... ....+.. +....+++ .|++++. ..+..+.|++|.+|+.....
T Consensus 113 ~dg~~l~~~~~~~~~~~~v~~wd~~~-~~~~l~g----h~~~v~~v---~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~ 184 (611)
T 1nr0_A 113 SESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTG----QARAMNSV---DFKPSRPFRIISGSDDNTVAIFEGPPFKFKS 184 (611)
T ss_dssp TTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCC----CSSCEEEE---EECSSSSCEEEEEETTSCEEEEETTTBEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEEEECCC-CCCEECC----CCCCCEEE---EECCCCCEEEEEEECCCEEEEEECCCCEEEE
T ss_conf 99997999989977366999963899-7632547----88983699---9889998299999289809999799975766
Q ss_pred --CCCCCCEEEEEECCCCCEEEEEEECCEEEEEEC
Q ss_conf --125998039998799978899851881999935
Q 005559 213 --KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNT 245 (691)
Q Consensus 213 --~~~~~~i~~Ia~SpnG~~iAl~t~dg~i~I~ss 245 (691)
..+.+++..++|||+|+++|..+.||++.+|+.
T Consensus 185 ~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
T ss_conf 52002571699999799998999989991999889
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=1.00 E-value=1 Score=137.01 Aligned_cols=254 Identities=12% Similarity=0.104 Sum_probs=178.8
Q ss_pred CCCEEEECCCCCEEEEEECCCHHHHHHCCCCCCEEEEECC-CCCEEEEEEECCCCCCEEEEEECCCCEE-EEEEECCEEE
Q ss_conf 9888999589983899955831343310147970999919-9962579770489998799975379929-9999288499
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSEDQTL-ICVVQDGTVY 111 (691)
Q Consensus 34 ~~~~vA~sp~GG~IAi~r~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~l~fs~de~L-vvv~~dGtV~ 111 (691)
....++++|+|..+|+.. .+++|+||+. .|+.+.+++.+. +.|.++.|+|++.+ ++...||+++
T Consensus 57 ~v~~~~~s~d~~~l~s~s------------~Dg~v~iWd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSAS------------QDGKLIIWDSYTTNKVHAIPLRS--SWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTTEEEEEETTTCCEEEEEECSS--SCEEEEEECTTSSEEEEEETTCEEE
T ss_pred CEEEEEECCCCCEEEEEE------------CCCCEEEEECCCCCCCEEEECCC--CCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 368999889999999981------------88968999899987433760388--6188999999999999980898199
Q ss_pred EEECCCC---E-ECCCCCCCCCCCCCCEEEEEEECCCEEEEECCCEEEEEECCCCCE-EEECCCCCCCCCCCEEEEECCC
Q ss_conf 9908987---0-023468986544368499999578238996188299995289864-8774899867999369994688
Q 005559 112 RYNIHAE---L-IEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMK-VCELARPEVEELPHCVAVIEPK 186 (691)
Q Consensus 112 iyd~~G~---~-~~~sl~~~~~~~~~~V~~a~i~~~G~vilt~~~~~~~v~n~~~~~-~~~l~~~~l~~~~~~w~vi~~~ 186 (691)
+|++... . ....+..+ ...|..+.+.++|.++..+......+|+..... ...+.. +....+++ .
T Consensus 123 iw~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~----h~~~v~~~---~ 191 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGH----TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG----HTGDVMSL---S 191 (340)
T ss_dssp EEETTTCSBSCEEEEEEECC----SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEE---E
T ss_pred EEECCCCCCCCEEEEEECCC----CCCEEEEEECCCCCEEEEECCCCEEEEECCCCCEEEEECC----CCCCEEEE---E
T ss_conf 99796688861367784487----7638999987999699998999299998999918899769----99866899---9
Q ss_pred CCCCCCEEEEEEECCEEEEEECCCCC-----CCCCCCEEEEEECCCCCEEEEEEECCEEEEEECCCCCCEEECCCCC-CC
Q ss_conf 57899769999728819999369842-----1259980399987999788998518819999359998601104788-89
Q 005559 187 YTMTGSVEVLIGTDAGILMLDEDGVQ-----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCES-AL 260 (691)
Q Consensus 187 ~S~~~~~~vlls~d~ti~~~d~~~~~-----~~~~~~i~~Ia~SpnG~~iAl~t~dg~i~I~ssd~~~~l~e~d~~~-~~ 260 (691)
+++++...+..+.|++|.+||..... ..+.+++..+++||+|+++|..+.||++.+|+..-.+.+..+.... ..
T Consensus 192 ~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~ 271 (340)
T 1got_B 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred ECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCC
T ss_conf 98999999999389939997789981678974876877999994999989997489819999889991899972688524
Q ss_pred CCCEEEEE---------CCCEEEEEECC-----EEEEECCCCC--CEEEECCCCEEEEECCCC-EEEEE
Q ss_conf 99737996---------58628998758-----6799808998--447303998288532891-69990
Q 005559 261 PPEQIAWC---------GMDSVLLYWND-----MLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILS 312 (691)
Q Consensus 261 ~p~~l~WC---------G~d~vvl~~~~-----~i~ligp~~~--~i~f~~~~~~~l~~E~DG-iRIit 312 (691)
....+.|. ++|..+..|+- .-.+.|+.+. .+.|..++..++....|| +|||.
T Consensus 272 ~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEECC
T ss_conf 169999989999999977999099988413838658505778488999829999899972886189559
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=136.22 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=82.6
Q ss_pred CCCEEEECCCCCEEEEEECCCHHHHHHCCCCCCEEEEECC-CCCEEEEEEECCCCCCEEEEEECCC--CE-EEEEEECCE
Q ss_conf 9888999589983899955831343310147970999919-9962579770489998799975379--92-999992884
Q 005559 34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNS-AGVLISETVWKNPGGRLIGMSWSED--QT-LICVVQDGT 109 (691)
Q Consensus 34 ~~~~vA~sp~GG~IAi~r~~~k~~~~~~~~~~~~I~Iys~-sG~ll~si~~~~~~~~Iv~l~fs~d--e~-Lvvv~~dGt 109 (691)
....++++|+|..+|+.. .++.|+||+. +|+.+.++..|. +.|.++.|+++ .. +++.+.||+
T Consensus 659 ~v~~~~~s~~~~~l~s~~------------~d~~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCS------------ADKKVKIWDSATGKLVHTYDEHS--EQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp CEEEEEECTTSSEEEEEE------------TTSEEEEEETTTCCEEEEEECCS--SCEEEEEECSSSSCCEEEEEETTSC
T ss_pred CEEEEEEECCCCEEEEEE------------CCCEEEEEECCCCCEEEEECCCC--CCEEEEEEECCCCCEEEEEEECCCE
T ss_conf 789999926999899981------------89959998779993689995899--7379999840899659999808970
Q ss_pred EEEEECC-CCEECCCCCCCCCCCCCCEEEEEEECCCEEEEECCC-EEEEEECCCCC
Q ss_conf 9999089-870023468986544368499999578238996188-29999528986
Q 005559 110 VYRYNIH-AELIEPNASMGKECFEENVVECVFWGNGVVCVTEAN-RYFCMADFATM 163 (691)
Q Consensus 110 V~iyd~~-G~~~~~sl~~~~~~~~~~V~~a~i~~~G~vilt~~~-~~~~v~n~~~~ 163 (691)
+++||+. |+... ++..+ ...|..+.+.++|-.+++++. ....+|+....
T Consensus 725 v~vwd~~~~~~~~-~~~~h----~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~ 775 (1249)
T 3sfz_A 725 LKLWDLNQKECRN-TMFGH----TNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775 (1249)
T ss_dssp EEEEETTSSSEEE-EECCC----SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGT
T ss_pred EEEEECCCCCHHH-EECCC----CCCEEEEEEECCCCEEEEEECCCEEEEEECCCC
T ss_conf 9999899963422-01277----797889999259998999978985999968888
Done!