BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005561
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 127/485 (26%), Positives = 219/485 (45%), Gaps = 60/485 (12%)
Query: 166 LWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-----EPLWKLLSKV 220
L L + RL +V L + ++S P F G+ +V I P + L +L +
Sbjct: 41 LLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDV-IYTNPTVDYSDNLTRLCLGL 99
Query: 221 GLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVXXXXXXXXXX 280
++ I V M T +++++ ++ +F +L Q+ FFD+ +
Sbjct: 100 SAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSD 159
Query: 281 XXXXKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIXXXXXXXXXXXXXXYKRST 340
V+EN+S G RA ++ I ++F ++P LA Y R
Sbjct: 160 TALLGRSVTENLSD--GLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL 217
Query: 341 VPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQV-----LAYQQSGIKL 395
+ K + A E +RTVR+FG E ++ + +V LA +++ +
Sbjct: 218 RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARA 277
Query: 396 GTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNT 455
G F + T ++ + +L++ GG + + ++VG ++SF+ Y F + ++ GL +
Sbjct: 278 GFFGA-----TGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF 332
Query: 456 FGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHL 515
+ +L A R+ +L ER + K +E + L N K
Sbjct: 333 YSELMKGLGAGGRLWELL-------------ER--EPKLPFNEGVIL------NEK---- 367
Query: 516 NMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSS 575
++ G + ++V+F+YP RP+V I +L++ SGSVTALVG S
Sbjct: 368 -----------------SFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPS 410
Query: 576 GAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635
G+GKST++ LL R Y+P G I++ G D+R + + V+QEP+LFS S+ ENIA
Sbjct: 411 GSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 470
Query: 636 YGLPD 640
YG D
Sbjct: 471 YGADD 475
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 127/485 (26%), Positives = 219/485 (45%), Gaps = 60/485 (12%)
Query: 166 LWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-----EPLWKLLSKV 220
L L + RL +V L + ++S P F G+ +V I P + L +L +
Sbjct: 10 LLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDV-IYTNPTVDYSDNLTRLCLGL 68
Query: 221 GLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVXXXXXXXXXX 280
++ I V M T +++++ ++ +F +L Q+ FFD+ +
Sbjct: 69 SAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSD 128
Query: 281 XXXXKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIXXXXXXXXXXXXXXYKRST 340
V+EN+S G RA ++ I ++F ++P LA Y R
Sbjct: 129 TALLGRSVTENLSD--GLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL 186
Query: 341 VPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQV-----LAYQQSGIKL 395
+ K + A E +RTVR+FG E ++ + +V LA +++ +
Sbjct: 187 RKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARA 246
Query: 396 GTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNT 455
G F + T ++ + +L++ GG + + ++VG ++SF+ Y F + ++ GL +
Sbjct: 247 GFFGA-----TGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF 301
Query: 456 FGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHL 515
+ +L A R+ +L ER + K +E + L N K
Sbjct: 302 YSELMKGLGAGGRLWELL-------------ER--EPKLPFNEGVIL------NEK---- 336
Query: 516 NMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSS 575
++ G + ++V+F+YP RP+V I +L++ SGSVTALVG S
Sbjct: 337 -----------------SFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPS 379
Query: 576 GAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635
G+GKST++ LL R Y+P G I++ G D+R + + V+QEP+LFS S+ ENIA
Sbjct: 380 GSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 439
Query: 636 YGLPD 640
YG D
Sbjct: 440 YGADD 444
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 139/294 (47%), Gaps = 48/294 (16%)
Query: 350 AQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409
A A E +AIRTV +FGG+K+++ + + ++ GIK +++ +
Sbjct: 242 AYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLL 301
Query: 410 IYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGL---VNTFGDLRGTFAAV 466
IY S + G S V + E S+G V + F+V + F + RG AA
Sbjct: 302 IYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARG--AAY 359
Query: 467 ERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSA 526
E I + ID +G + D NI+
Sbjct: 360 EVFKIIDNKPSIDSFSKSGHKPD---------NIQ------------------------- 385
Query: 527 NSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLL 586
G++ ++++FSYP R +V IL GLNL +KSG ALVG+SG GKST VQL+
Sbjct: 386 ---------GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 587 ARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640
R Y+P G +++ G+D+RT + ++ +V+QEPVLF+ ++ ENI YG D
Sbjct: 437 QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED 490
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Query: 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
G++ V F+YP RP + +L GL+L +K G ALVGSSG GKST+VQLL RFY+P
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 595 GRITVGGEDLRTFDKSEWARV-VSIVNQEPVLFSVSVGENIAYG 637
G + + G++++ + +W R + IV+QEP+LF S+ ENIAYG
Sbjct: 1088 GSVFLDGKEIKQLN-VQWLRAQLGIVSQEPILFDCSIAENIAYG 1130
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 139/294 (47%), Gaps = 48/294 (16%)
Query: 350 AQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409
A A E +AIRTV +FGG+K+++ + + ++ GIK +++ +
Sbjct: 242 AYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLL 301
Query: 410 IYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGL---VNTFGDLRGTFAAV 466
IY S + G S V + E S+G V + F+V + F + RG AA
Sbjct: 302 IYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARG--AAY 359
Query: 467 ERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSA 526
E I + ID +G + D NI+
Sbjct: 360 EVFKIIDNKPSIDSFSKSGHKPD---------NIQ------------------------- 385
Query: 527 NSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLL 586
G++ ++++FSYP R +V IL GLNL +KSG ALVG+SG GKST VQL+
Sbjct: 386 ---------GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
Query: 587 ARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640
R Y+P G +++ G+D+RT + ++ +V+QEPVLF+ ++ ENI YG D
Sbjct: 437 QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED 490
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 2/104 (1%)
Query: 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
G++ V F+YP RP + +L GL+L +K G ALVGSSG GKST+VQLL RFY+P
Sbjct: 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 595 GRITVGGEDLRTFDKSEWARV-VSIVNQEPVLFSVSVGENIAYG 637
G + + G++++ + +W R + IV+QEP+LF S+ ENIAYG
Sbjct: 1088 GSVFLDGKEIKQLN-VQWLRAQLGIVSQEPILFDCSIAENIAYG 1130
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/299 (29%), Positives = 141/299 (47%), Gaps = 62/299 (20%)
Query: 349 LAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRI 408
L A V ET S+IRTV S G + ++ + V +++G+ G F ++ +
Sbjct: 269 LRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQA 328
Query: 409 AIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVER 468
+ +IS + +G V G L+ FGD+ TF++V
Sbjct: 329 SNFISFALAFYIGVGWVHDGSLN------------------------FGDMLTTFSSVMM 364
Query: 469 IN----------SILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMH 518
+ ++L T + A+G+ + +K V D S+ K +M
Sbjct: 365 GSMALGLAGPQLAVLGTAQ---GAASGIYEVLDRKPVID----------SSSKAGRKDMK 411
Query: 519 YMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAG 578
GDI +E+V+F+YP RPDV IL G+NL + +G ALVGSSG G
Sbjct: 412 I---------------KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCG 456
Query: 579 KSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG 637
KSTI+ LL R+Y+ G+IT+ G D+R + + V++V+QEP LF+ ++ ENI+ G
Sbjct: 457 KSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG 515
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 71/109 (65%)
Query: 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
G + ++V F+YP RP++ IL GL+ +++ G ALVG SG GKST+V LL RFY+ GG
Sbjct: 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVS 644
I + G +++T + ++IV+QEP LF S+ ENI YGL +V+
Sbjct: 1135 EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVT 1183
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 135 PIVSEPDPRI-NDSVSPSEKVHSPPNLITWGLLWSLFLK--HKLRL--GLSVLTLIGCTT 189
P++ E + RI D++S ++ N L L+ H L L G+S T+ G
Sbjct: 709 PVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIY 768
Query: 190 CTLSMPIFSGRFFEVLIGARPEPL-----WKLLSKVGLLYALEPIFTVIFVMNMNTVWEK 244
T S +F F V G + L W L+ V L A + I + + M E
Sbjct: 769 PTYS--VFFTSFMNVFAGNPADFLSQGHFWALMFLV--LAAAQGICSFLMTFFMGIASES 824
Query: 245 VMSIVKAQIFRRVLIQKAEFFD 266
+ ++ ++FR VL Q FFD
Sbjct: 825 LTRDLRNKLFRNVLSQHIGFFD 846
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 70/104 (67%)
Query: 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
G + +DV F+YP RPDV++L GL TL+ G VTALVG +G+GKST+ LL Y+PTG
Sbjct: 12 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 71
Query: 595 GRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638
G++ + G+ L ++ R V+ V QEP +F S+ ENIAYGL
Sbjct: 72 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGL 115
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 109/464 (23%), Positives = 188/464 (40%), Gaps = 63/464 (13%)
Query: 184 LIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWE 243
LIG T + +P R F++L P + L+ +G +YAL + + M T+ +
Sbjct: 59 LIGKTIDVVFVP----RRFDLL------PRYMLI--LGTIYALTSLLFWLQGKIMLTLSQ 106
Query: 244 KVMSIVKAQIFRRVLIQKAEFFDRYKVXXXXXXXXXXXXXXKALVSENISRDRGFRALSE 303
V+ ++ ++F ++ FFDR ++ +I + F +
Sbjct: 107 DVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQ--FFSGIVT 164
Query: 304 VIGTICILFNIAPQLAPIXXXXXXXXXXXXXXYKRSTVPVFKAHGLAQASIADCVTETFS 363
+ G + ++F + L+ + T F + + + E S
Sbjct: 165 LAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDIS 224
Query: 364 AIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGS 423
+ ++ F E+++M F R + ++ G K F + L + + + GG
Sbjct: 225 GLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGW 284
Query: 424 KVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALA 483
++VG +A+FIGY+ T + L N F ++ A+ ERI IL E
Sbjct: 285 LALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE------ 338
Query: 484 NGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDV 543
E+D ++V G+I ++V
Sbjct: 339 ---EKD-----------------------------------DPDAVELREVRGEIEFKNV 360
Query: 544 YFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED 603
+FSY + V L + +K G ALVG +G+GK+TIV LL RFY+ G+I V G D
Sbjct: 361 WFSYDKKKPV--LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Query: 604 LRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP---DENVS 644
+R +S + IV Q+ +LFS +V EN+ YG P DE +
Sbjct: 419 IRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIK 462
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 69/113 (61%)
Query: 526 ANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQL 585
+ S+ G + +DV F+YP P+V +L GL TL G VTALVG +G+GKST+ L
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 586 LARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638
L Y+PTGG++ + GE L +D V+ V QEP+LF S ENIAYGL
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL 117
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 69/113 (61%)
Query: 526 ANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQL 585
+ S+ G + +DV F+YP P+V +L GL TL G VTALVG +G+GKST+ L
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 586 LARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638
L Y+PTGG++ + GE L +D V+ V QEP+LF S ENIAYGL
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL 117
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 69/113 (61%)
Query: 526 ANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQL 585
+ S+ G + +DV F+YP P+V +L GL TL G VTALVG +G+GKST+ L
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 586 LARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638
L Y+PTGG++ + GE L +D V+ V QEP+LF S ENIAYGL
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL 117
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 130/297 (43%), Gaps = 47/297 (15%)
Query: 350 AQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409
A A + + E I V+SF E + F ++ + +K + + + +
Sbjct: 195 ALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTV 254
Query: 410 IYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERI 469
I + + +G +G ++VG +A+F+GY L ++ LV +F L +FA+++R+
Sbjct: 255 TDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRV 314
Query: 470 NSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSV 529
++ ED +IK +G + +
Sbjct: 315 FQLID---------------------EDYDIK----NGVGAQPIEIK------------- 336
Query: 530 CSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF 589
G I ++ V F Y + IL +NL+++ G A VG SG GKST++ L+ RF
Sbjct: 337 -----QGRIDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 390
Query: 590 YEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP---DENV 643
Y+ T G+I + G +++ F + +V Q+ +LFS +V ENI G P DE V
Sbjct: 391 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEV 447
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 132/303 (43%), Gaps = 52/303 (17%)
Query: 342 PVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSL 401
P+F+ + + V E +R VR+F E+ + F + + ++S I +
Sbjct: 189 PLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVF 248
Query: 402 NESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRG 461
L + + ++A+ GG V+ ++ +G + ++ Y + F++ + N +
Sbjct: 249 ALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVR 308
Query: 462 TFAAVERINSILSTT----EIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNM 517
A+ +R+ +L+ E D+ALA +VE
Sbjct: 309 ASASAKRVLEVLNEKPAIEEADNALA--------LPNVE--------------------- 339
Query: 518 HYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGA 577
G + E+V F Y D V L+G+N ++K GS+ A++G +G+
Sbjct: 340 ------------------GSVSFENVEFRYFENTDPV-LSGVNFSVKPGSLVAVLGETGS 380
Query: 578 GKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG 637
GKST++ L+ R +P GR+ V D+RT + +S V QE VLFS ++ EN+ +G
Sbjct: 381 GKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWG 440
Query: 638 LPD 640
D
Sbjct: 441 RED 443
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
+GD+ +V F+YP R DV L +NL + +G ALVG SG+GKSTI L+ RFY+
Sbjct: 339 TGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 595 GRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE 641
G I + G DLR + + V++V+Q LF+ +V NIAY ++
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQ 444
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
+GD+ +V F+YP R +V L +NL + +G ALVG SG+GKSTI L+ RFY+
Sbjct: 339 TGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 595 GRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE 641
G I + G DLR + + V++V+Q LF+ +V NIAY +E
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEE 444
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR 596
+I DV FSYP + + L +N + SG+ ALVG +G+GKSTI +LL RFY+ G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGD- 75
Query: 597 ITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640
I +GG+++ ++++ ++ IV Q+ +LF+ ++ NI YG D
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG SG+GKST+ +L+ RFY P G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639
++ + G DL D + R V +V Q+ VL + S+ +NI+ P
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 104
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG SG+GKST+ +L+ RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639
++ + G DL D + R V +V Q+ VL + S+ +NI+ P
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 108
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG SG+GKST+ +L+ RFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639
++ + G DL D + R V +V Q+ VL + S+ +NI+ P
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 102
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG SG+GKST+ +L+ RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639
++ + G DL D + R V +V Q+ VL + S+ +NI+ P
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 108
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG SG+GKST+ +L+ RFY P G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639
++ + G DL D + R V +V Q+ VL + S+ +NI+ P
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 102
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG SG+GKST+ +L+ RFY P G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639
++ + G DL D + R V +V Q+ VL + S+ +NI+ P
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 108
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 537 DICLEDVYFSYPLRPDV-VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595
DI ++ F Y +PD VIL+ +NL++K G V +VG +G+GKST+ +L+ RFY P G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 596 RITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLP 639
++ + G DL D + R V +V Q+ VL + S+ +NI+ P
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP 104
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 123/292 (42%), Gaps = 46/292 (15%)
Query: 350 AQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409
A + + + V S+GG++ + F + + +Q +KL + +S+ + + ++
Sbjct: 199 AMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMI 258
Query: 410 IYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERI 469
++L A+ L EL+ G F L ++ L + + + AA + +
Sbjct: 259 ASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTL 318
Query: 470 NSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSV 529
++ ERD NGK++ A V
Sbjct: 319 FGLMDLET---------ERD-------------------NGKYE------------AERV 338
Query: 530 CSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF 589
+G++ ++DV F+Y + L+ ++ ++ G ALVG SG+GKSTI L RF
Sbjct: 339 -----NGEVDVKDVTFTYQGKEKPA-LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392
Query: 590 YEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE 641
Y+ G I + G D+R + + R ++V+Q LF+ ++ NIAY E
Sbjct: 393 YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGE 444
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 10/136 (7%)
Query: 510 GKHQHLNMHYM-SHLKSANSVCSFAWSG-------DICLEDVYFSYPLRPDVVILNGLNL 561
G H ++M M LK V +G I E+V+FSY + L ++
Sbjct: 18 GSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRET--LQDVSF 75
Query: 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQ 621
T+ G ALVG SGAGKSTI++LL RFY+ + G I + G+D+ ++ + +V Q
Sbjct: 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQ 135
Query: 622 EPVLFSVSVGENIAYG 637
+ VLF+ ++ +NI YG
Sbjct: 136 DTVLFNDTIADNIRYG 151
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
IL ++ + S+ A G SG GKSTI LL RFY+PT G IT+ G+ + W
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 615 VVSIVNQEPVLFSVSVGENIAYGL 638
+ V+Q+ + + ++ EN+ YGL
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGL 100
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV 599
LE + Y ++ +I N ++L + SG + A++G +GAGKST+++LL + P+ G +
Sbjct: 12 LEASHLHYHVQQQALI-NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70
Query: 600 GGEDLRTFDKSEWARVVSIVNQEPVL-FSVSVGENIAYG 637
G++L ++ AR +++ Q L F SV E I G
Sbjct: 71 LGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMG 109
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
+N LNLT+K G L+G SG GK+T ++++A EPT GRI G D+ + R
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RN 85
Query: 616 VSIVNQEPVLF-SVSVGENIAYGL 638
+S+V Q ++ ++V ENIA+ L
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPL 109
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 55/89 (61%), Gaps = 7/89 (7%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE--- 611
+LN ++L+L G + ++G+SG GK+T+++ LA F +P G I++ G+ + F K+
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI--FSKNTNLP 76
Query: 612 -WARVVSIVNQEPVLF-SVSVGENIAYGL 638
R + + QE VLF ++V NIAYGL
Sbjct: 77 VRERRLGYLVQEGVLFPHLTVYRNIAYGL 105
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
+N LNLT+K G L+G SG GK+T ++++A EPT GRI G D+ + R
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RN 84
Query: 616 VSIVNQEPVLF-SVSVGENIAYGL 638
+S+V Q ++ ++V ENIA+ L
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPL 108
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
+ G++ ++ G + L+G SG+GK+TI++L+A PT G + +GG+ R D R
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK--RVTDLPPQKRN 88
Query: 616 VSIVNQEPVLFS-VSVGENIAYGLPDENV 643
V +V Q LF ++V +N+++GL ++ V
Sbjct: 89 VGLVFQNYALFQHMTVYDNVSFGLREKRV 117
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS----- 610
L G+N+ +K G VTA++G +G GKST+ Q +P+ GRI D + D S
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF---DNKPIDYSRKGIM 80
Query: 611 EWARVVSIVNQEP--VLFSVSVGENIAYG-----LPDENV 643
+ + IV Q+P LFS SV +++++G LP++ +
Sbjct: 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEI 120
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
LN +NL +K G AL+G SG+GKST++ +A Y+PT G+I +D+ + R
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RN 76
Query: 616 VSIVNQEPVLF-SVSVGENIAYGL 638
V +V Q L+ ++V +NIA+ L
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPL 100
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 538 ICLEDVYFSYPLRPDVV-ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG-- 594
I +ED+ Y +R + +G++L + SVTA+VG S +GKSTI++ + + P G
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 595 --GRITVGGEDLRTFDKSEWARV 615
GR+ G+DL T + E ++
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKI 87
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
LN ++L + +G + ++G+SGAGKST+++ + PT G + V G++L T +SE +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
LN ++L + +G + ++G+SGAGKST+++ + PT G + V G++L T +SE +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
LN ++L + +G + ++G+SGAGKST+++ + PT G + V G++L T +SE +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
++G++ +K G AL+G SG GK+T + +LA Y+PT G I +D+ D R
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF--DDVLVNDIPPKYRE 76
Query: 616 VSIVNQEPVLF-SVSVGENIAYGL 638
V +V Q L+ ++V ENIA+ L
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPL 100
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
L+ L+L ++SG ++G +GAGK+ ++L+A F+ P GRI + G+D+ D S
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV--TDLSPEKHD 73
Query: 616 VSIVNQEPVLF-SVSVGENIAYGL 638
++ V Q LF ++V +N+ +G+
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGM 97
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
+VV+ +NL + G VG SG GKST+++++A T G + +G + R D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPP 72
Query: 612 WARVVSIVNQEPVLF-SVSVGENIAYGL 638
R V +V Q L+ +SV EN+++GL
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGL 100
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
+VV+ +NL + G VG SG GKST+++++A T G + +G + R D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPP 72
Query: 612 WARVVSIVNQEPVLF-SVSVGENIAYGL 638
R V +V Q L+ +SV EN+++GL
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGL 100
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
+VV+ +NL + G VG SG GKST+++++A T G + +G + R D
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPP 72
Query: 612 WARVVSIVNQEPVLF-SVSVGENIAYGL 638
R V +V Q L+ +SV EN+++GL
Sbjct: 73 AERGVGMVFQSYALYPHLSVAENMSFGL 100
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 39/57 (68%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
IL G++L++K G +++G+SG+GKST++ +L PT G++ + G+++ ++ E
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKE 75
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 538 ICLEDVYFSYPLRPDVV-ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR 596
I L++V +Y + +++ L +NL +K G +++G SG+GKST++ ++ +PT G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 597 ITVGGEDLRTFDKSEWARV 615
+ + D E ++
Sbjct: 62 VYIDNIKTNDLDDDELTKI 80
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA--RFYEPTGG 595
+ ++D++ S D IL GL+L + G V A++G +G+GKST+ LA YE TGG
Sbjct: 2 LSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58
Query: 596 RITVGGEDL 604
+ G+DL
Sbjct: 59 TVEFKGKDL 67
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA--RFYEPTGG 595
+ ++D++ S D IL GL+L + G V A++G +G+GKST+ LA YE TGG
Sbjct: 21 LSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 77
Query: 596 RITVGGEDL 604
+ G+DL
Sbjct: 78 TVEFKGKDL 86
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 538 ICLEDVYFSYPLRPDVV-ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR 596
+ L++V +Y + +++ L +NL +K G +++G SG+GKST++ ++ +PT G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 597 ITVGGEDLRTFDKSEWARV 615
+ + D E ++
Sbjct: 62 VYIDNIKTNDLDDDELTKI 80
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
L ++L + G + G++G+GKST++Q++A EPT G + GE + + E R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79
Query: 616 VSIVNQEP--VLFSVSVGENIAYGL----PDEN 642
+ I Q P F+ V + +A+ + PD +
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD 112
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615
L ++L + G + G++G+GKST++Q++A EPT G + GE + + E R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 81
Query: 616 VSIVNQEP--VLFSVSVGENIAYGL----PDEN 642
+ I Q P F+ V + +A+ + PD +
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRD 114
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 559 LNLTLKSG-SVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617
LN+ + G L+G +GAGKS ++L+A +P G + + G D+ R +
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER--RGIG 73
Query: 618 IVNQEPVLF-SVSVGENIAYGL 638
V Q+ LF +SV NIAYGL
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGL 95
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT--GGRITVGGEDLRTFDKSEW 612
IL G+NL + G V AL+G +GAGKST+ ++LA E T G I + GE++ E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 613 AR 614
AR
Sbjct: 78 AR 79
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
+ +E++ F Y + + + LN L G + A++G +G GKST++ LL + P G+I
Sbjct: 5 LSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 598 TV 599
V
Sbjct: 63 EV 64
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 538 ICLEDVYFSYPLRPDVV-ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR 596
I L++V +Y +++ L +NL +K G ++ G SG+GKST + ++ +PT G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 597 ITVGGEDLRTFDKSEWARV 615
+ + D E ++
Sbjct: 62 VYIDNIKTNDLDDDELTKI 80
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 36/56 (64%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
L+G+++++ G VT ++G +G+GKST++ ++ F + GR+ +D+ + +E
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 36/56 (64%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
L+G+++++ G VT ++G +G+GKST++ ++ F + GR+ +D+ + +E
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
DV + L+L +K G L+G SG GK+T ++ +A EPT G+I + ED D +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYI--EDNLVADPEK 75
Query: 612 W------ARVVSIVNQEPVLF-SVSVGENIAYGL 638
R V+ V Q L+ +V +NIA+ L
Sbjct: 76 GVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPL 109
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 35/50 (70%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDL 604
IL G++ ++ G + L+G +GAGK+T +++++ +P+ G +TV G+++
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV 79
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD 608
+L G+N+ ++ G V ++G SG+GKST ++ L + G I + G +L+ D
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKD 71
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
+V + ++L +K G L+G SG GK+T ++++A EP+ G+I +G + + +K
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 612 WA----RVVSIVNQEPVLF-SVSVGENIAYGL 638
+ R +++V Q L+ ++V +NIA+ L
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL 106
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD 608
+L G+N+ ++ G V ++G SG+GKST ++ L + G I + G +L+ D
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKD 92
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G R S+++
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSW 91
Query: 615 VVSIVNQEPVLFSVSVGE 632
++ +E ++F VS E
Sbjct: 92 IMPGTIKENIIFGVSYDE 109
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 36/56 (64%)
Query: 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611
L+G+++++ G VT ++G +G+GKST++ ++ F + GR+ +D+ + +E
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G R S+++
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSW 79
Query: 615 VVSIVNQEPVLFSVSVGE 632
++ +E ++F VS E
Sbjct: 80 IMPGTIKENIIFGVSYDE 97
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G R S+++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSW 109
Query: 615 VVSIVNQEPVLFSVSVGE 632
++ +E ++F VS E
Sbjct: 110 IMPGTIKENIIFGVSYDE 127
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614
IL ++ ++ G L+G +G+GKST++ R T G I + G + +W +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 615 VVSIVNQEPVLFSVSVGENI 634
++ Q+ +FS + +N+
Sbjct: 95 AFGVIPQKVFIFSGTFRKNL 114
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
++ G V +VG +G GK+T V++LA EPT G++
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 399
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 563 LKSGSVTALVGSSGAGKSTIVQLLA 587
+K G V +VG +G GK+T V++LA
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILA 124
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
++ G V +VG +G GK+T V++LA EPT G++
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 563 LKSGSVTALVGSSGAGKSTIVQLLA 587
+K G V +VG +G GK+T V++LA
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILA 138
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
+K G V +VG +G GK+T V+ LA EPT G+I
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI 343
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 563 LKSGSVTALVGSSGAGKSTIVQLLA 587
+K G V +VG +G GKST V++LA
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILA 68
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 537 DICLE----DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP 592
DI LE VY+ + + G++L + G + L+G++GAGK+T + +A
Sbjct: 4 DIVLEVQSLHVYYGA-----IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 593 TGGRITVGGEDL 604
G+I G+D+
Sbjct: 59 QKGKIIFNGQDI 70
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+L +N ++ G + A+ GS+GAGK++++ ++ EP+ G+I G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
I + + F++ R D LNG+ ++ G++ A+VG G GKS+++ L + G +
Sbjct: 4 ITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 598 TVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG 637
+ G V+ V Q+ + + S+ ENI +G
Sbjct: 63 AIKGS-------------VAYVPQQAWIQNDSLRENILFG 89
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617
T + G V LVG++G GKST +++LA +P GR D EW ++
Sbjct: 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD---------DPPEWQEIIK 145
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 545 FSYP----LRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR 596
FSYP + D V LN + ++G +G GK+T+++LLA +P G+
Sbjct: 354 FSYPSLKKTQGDFV-LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+V FS+ +L +NL ++ G + A+ GS+G+GK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 602 EDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632
R S+++ ++ +E ++F VS E
Sbjct: 100 ---RVSFCSQFSWIMPGTIKENIIFGVSYDE 127
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+V FS+ +L +NL ++ G + A+ GS+G+GK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 602 EDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632
R S+++ ++ +E ++F VS E
Sbjct: 100 ---RVSFCSQFSWIMPGTIKENIIFGVSYDE 127
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
VV L+ +N+ +++G ++G SGAGK+T ++++A P+ G +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
VV L+ +N+ +++G ++G SGAGK+T ++++A P+ G +
Sbjct: 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
D +L + +T++ G+V G +G GK+T+++ ++ + +P G I G
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 70
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 17/68 (25%)
Query: 527 NSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLL 586
NSV SF ++GD L+DV N ++G + +VG +G+GK+T++++L
Sbjct: 15 NSV-SFRYNGDYVLKDV----------------NAEFETGKIYVVVGKNGSGKTTLLKIL 57
Query: 587 ARFYEPTG 594
A G
Sbjct: 58 AGLLAAAG 65
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+V FS+ +L +NL ++ G + A+ GS+G+GK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+V FS+ +L +NL ++ G + A+ GS+G+GK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601
+V FS+ +L +NL ++ G + A+ GS+G+GK++++ L+ E + G I G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR- 596
+ L+DV S L P L+ +++G + LVG +GAGKST LLAR T G+
Sbjct: 5 MQLQDVAESTRLGP-------LSGEVRAGEILHLVGPNGAGKST---LLARMAGMTSGKG 54
Query: 597 -ITVGGEDLRTFDKSEWARVVSIVNQE 622
I G+ L + ++ A + ++Q+
Sbjct: 55 SIQFAGQPLEAWSATKLALHRAYLSQQ 81
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR- 596
+ L+DV S L P L+ +++G + LVG +GAGKST LLAR T G+
Sbjct: 5 MQLQDVAESTRLGP-------LSGEVRAGEILHLVGPNGAGKST---LLARMAGMTSGKG 54
Query: 597 -ITVGGEDLRTFDKSEWARVVSIVNQE 622
I G+ L + ++ A + ++Q+
Sbjct: 55 SIQFAGQPLEAWSATKLALHRAYLSQQ 81
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 542 DVYFSYP--LRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
++ F YP +P + +N S A++G +GAGKST++ +L PT G +
Sbjct: 676 NMEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR--I 597
L+DV S L P L+ +++G + LVG +GAGKST LLAR T G+ I
Sbjct: 7 LQDVAESTRLGP-------LSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSI 56
Query: 598 TVGGEDLRTFDKSEWARVVSIVNQE 622
G+ L + ++ A + ++Q+
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQ 81
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGR--I 597
L+DV S L P L+ +++G + LVG +GAGKST LLAR T G+ I
Sbjct: 7 LQDVAESTRLGP-------LSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSI 56
Query: 598 TVGGEDLRTFDKSEWARVVSIVNQE 622
G+ L + ++ A + ++Q+
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQ 81
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 545 FSYP--LRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
F YP +P + +N S A++G +GAGKST++ +L PT G +
Sbjct: 673 FQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 545 FSYP--LRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597
F YP +P + +N S A++G +GAGKST++ +L PT G +
Sbjct: 679 FQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 19/135 (14%)
Query: 469 INSILSTTEIDDALANGLERDIQQKHVE-DENIKLFLFDGSNGKHQHLNMHYMSHLKSAN 527
+ I + +D+AL L RDIQ+ ++ D N++L L + + L + +
Sbjct: 14 LKKIARASSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKE 73
Query: 528 SVCSFAWSGDICLEDV--YFSYPLRPDVVILNGLNLTLKSG-SVTALVGSSGAGKSTIVQ 584
+ + E++ + +P + +K ++ +VG G+GK+T V
Sbjct: 74 HIIKIVY------EELTKFLGTEAKP---------IEIKEKPTILLMVGIQGSGKTTTVA 118
Query: 585 LLARFYEPTGGRITV 599
LAR+++ G ++ V
Sbjct: 119 KLARYFQKRGYKVGV 133
>pdb|3HJN|A Chain A, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
pdb|3HJN|B Chain B, Crystal Structure Of Thymidylate Kinase In Complex With
Dtdp And Adp From Thermotoga Maritima
Length = 197
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 573 GSSGAGKSTIVQLLARFYEPTGGRITVGGE 602
G G+GKST +QLLA++ E G ++ + E
Sbjct: 7 GIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED 603
LN+ K+ V +VG +G GK+T + LAR +E G + + D
Sbjct: 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 473 LSTTEIDDALANGLERDIQ-------QKHVEDENIKLFLFDGSN 509
+S TE+ + L GL IQ +H+E+ IK+F DGS+
Sbjct: 109 ISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSH 152
>pdb|4GP7|A Chain A, Polynucleotide Kinase
pdb|4GP7|B Chain B, Polynucleotide Kinase
Length = 171
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT 593
LT+ S+ L+GSSG+GKST + + ++PT
Sbjct: 4 LTIPELSLVVLIGSSGSGKSTFAK---KHFKPT 33
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED 603
LN+ K+ V +VG +G GK+T + LAR +E G + + D
Sbjct: 92 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 136
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED 603
LN+ K+ V +VG +G GK+T + LAR +E G + + D
Sbjct: 91 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 135
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED 603
LN+ K+ V +VG +G GK+T + LAR +E G + + D
Sbjct: 86 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 130
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDL 604
V LVG G GK+T LA FY+ G ++ + G D+
Sbjct: 100 VIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV 136
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDL 604
V LVG G GK+T LA FY+ G ++ + G D+
Sbjct: 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
L L K +V LVG G+GK+T LAR+ + G
Sbjct: 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRG 127
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594
L L K +V LVG G+GK+T LAR+ + G
Sbjct: 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRG 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,613,825
Number of Sequences: 62578
Number of extensions: 668363
Number of successful extensions: 1763
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1627
Number of HSP's gapped (non-prelim): 140
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)