Query 005561
Match_columns 691
No_of_seqs 397 out of 1966
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 01:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 9.7E-81 2.1E-85 688.0 56.3 465 161-673 133-599 (716)
2 COG2274 SunT ABC-type bacterio 100.0 2E-73 4.3E-78 653.9 61.8 501 123-673 95-604 (709)
3 TIGR01193 bacteriocin_ABC ABC- 100.0 2.3E-67 5E-72 619.3 63.6 492 123-673 95-606 (708)
4 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 5.2E-67 1.1E-71 616.8 63.5 499 123-673 95-610 (710)
5 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.9E-66 6.4E-71 607.9 64.2 499 122-672 80-582 (686)
6 TIGR03375 type_I_sec_LssB type 100.0 2E-66 4.4E-71 610.0 62.8 491 126-672 86-595 (694)
7 KOG0055 Multidrug/pheromone ex 100.0 9E-67 1.9E-71 606.4 57.1 466 162-673 651-1121(1228)
8 TIGR02868 CydC thiol reductant 100.0 5.7E-66 1.2E-70 588.8 60.6 460 165-673 3-465 (529)
9 TIGR00958 3a01208 Conjugate Tr 100.0 5.4E-65 1.2E-69 597.6 63.1 464 162-673 148-612 (711)
10 TIGR01846 type_I_sec_HlyB type 100.0 1.9E-64 4E-69 593.1 64.2 500 123-673 81-588 (694)
11 PRK11174 cysteine/glutathione 100.0 1.1E-64 2.4E-69 585.3 61.1 459 163-672 10-479 (588)
12 COG1132 MdlB ABC-type multidru 100.0 8.5E-63 1.9E-67 566.8 61.0 457 163-673 4-460 (567)
13 PTZ00265 multidrug resistance 100.0 7E-63 1.5E-67 610.8 62.4 466 162-673 812-1353(1466)
14 PRK11160 cysteine/glutathione 100.0 3.5E-62 7.7E-67 561.4 61.4 459 163-672 4-469 (574)
15 PRK11176 lipid transporter ATP 100.0 1.4E-61 3.1E-66 558.9 62.6 463 162-673 12-475 (582)
16 TIGR02857 CydD thiol reductant 100.0 1.6E-61 3.5E-66 552.1 60.4 450 174-673 2-453 (529)
17 TIGR02203 MsbA_lipidA lipid A 100.0 2E-60 4.4E-65 548.3 61.7 462 163-673 2-464 (571)
18 KOG0055 Multidrug/pheromone ex 100.0 2.4E-62 5.1E-67 569.5 41.0 452 177-674 27-485 (1228)
19 PRK10790 putative multidrug tr 100.0 9.5E-60 2.1E-64 544.5 62.3 456 163-672 11-470 (592)
20 TIGR02204 MsbA_rel ABC transpo 100.0 1.7E-59 3.8E-64 541.0 61.5 466 162-673 5-471 (576)
21 TIGR01192 chvA glucan exporter 100.0 3.2E-59 6.9E-64 537.8 63.1 460 163-673 7-466 (585)
22 PRK13657 cyclic beta-1,2-gluca 100.0 5.3E-59 1.1E-63 537.6 62.7 459 163-672 7-465 (588)
23 PRK10789 putative multidrug tr 100.0 8.6E-59 1.9E-63 533.2 58.0 440 184-673 4-446 (569)
24 TIGR01842 type_I_sec_PrtD type 100.0 1.3E-57 2.9E-62 521.1 58.7 446 171-672 2-448 (544)
25 PTZ00265 multidrug resistance 100.0 6.9E-57 1.5E-61 557.5 63.0 463 163-673 47-574 (1466)
26 KOG0056 Heavy metal exporter H 100.0 1.2E-59 2.6E-64 492.7 29.0 446 177-673 217-669 (790)
27 TIGR00957 MRP_assoc_pro multi 100.0 1.7E-56 3.7E-61 559.4 59.4 463 162-673 951-1416(1522)
28 COG4988 CydD ABC-type transpor 100.0 1.3E-55 2.8E-60 480.4 57.2 444 181-673 6-451 (559)
29 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.3E-56 7.1E-61 510.1 55.2 461 163-673 5-470 (555)
30 KOG0057 Mitochondrial Fe/S clu 100.0 1.6E-56 3.6E-61 479.7 48.1 444 178-673 33-482 (591)
31 COG4987 CydC ABC-type transpor 100.0 5.9E-55 1.3E-59 467.5 52.9 451 173-673 14-469 (573)
32 PLN03130 ABC transporter C fam 100.0 7.3E-55 1.6E-59 544.2 60.6 462 161-673 899-1369(1622)
33 PTZ00243 ABC transporter; Prov 100.0 2.1E-54 4.6E-59 539.3 59.4 413 240-672 1024-1439(1560)
34 PLN03232 ABC transporter C fam 100.0 1.1E-53 2.4E-58 533.4 57.7 404 221-673 957-1366(1495)
35 KOG0054 Multidrug resistance-a 100.0 3E-54 6.6E-59 513.2 48.1 403 221-672 865-1269(1381)
36 COG4618 ArpD ABC-type protease 100.0 3.2E-52 6.8E-57 442.5 46.5 451 166-672 14-466 (580)
37 TIGR01271 CFTR_protein cystic 100.0 1.3E-50 2.8E-55 505.2 59.5 405 230-673 941-1348(1490)
38 COG5265 ATM1 ABC-type transpor 100.0 1.6E-51 3.4E-56 428.3 31.1 389 238-674 6-395 (497)
39 PRK10522 multidrug transporter 100.0 5.5E-49 1.2E-53 450.1 54.5 438 165-668 3-444 (547)
40 PLN03130 ABC transporter C fam 100.0 7.9E-49 1.7E-53 490.1 60.6 443 165-673 291-735 (1622)
41 PLN03232 ABC transporter C fam 100.0 6.9E-49 1.5E-53 490.4 59.9 440 166-673 292-735 (1495)
42 TIGR00954 3a01203 Peroxysomal 100.0 6.4E-48 1.4E-52 448.1 52.3 474 163-673 79-578 (659)
43 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-43 2.4E-48 444.3 60.6 445 165-673 307-755 (1522)
44 TIGR01271 CFTR_protein cystic 100.0 1.5E-41 3.2E-46 424.0 60.1 462 165-673 70-543 (1490)
45 PTZ00243 ABC transporter; Prov 100.0 8.7E-41 1.9E-45 417.4 58.9 493 160-673 229-777 (1560)
46 KOG0054 Multidrug resistance-a 100.0 1.1E-40 2.3E-45 397.6 53.6 443 166-673 192-638 (1381)
47 COG4615 PvdE ABC-type sideroph 100.0 1.9E-32 4.2E-37 282.8 40.7 430 166-659 4-435 (546)
48 COG4178 ABC-type uncharacteriz 100.0 4.4E-27 9.5E-32 261.5 48.4 423 192-665 64-507 (604)
49 PF00664 ABC_membrane: ABC tra 99.9 8.2E-24 1.8E-28 217.1 39.1 270 178-449 2-275 (275)
50 cd03289 ABCC_CFTR2 The CFTR su 99.9 6.6E-27 1.4E-31 244.1 14.6 132 536-672 1-132 (275)
51 cd03244 ABCC_MRP_domain2 Domai 99.9 7.3E-25 1.6E-29 222.2 14.9 134 536-673 1-134 (221)
52 KOG0060 Long-chain acyl-CoA tr 99.9 4.9E-22 1.1E-26 215.2 36.8 436 204-674 112-565 (659)
53 cd03254 ABCC_Glucan_exporter_l 99.9 3.8E-24 8.3E-29 218.1 14.3 132 537-672 2-133 (229)
54 COG1125 OpuBA ABC-type proline 99.9 9.4E-25 2E-29 215.3 9.2 126 538-667 2-135 (309)
55 cd03288 ABCC_SUR2 The SUR doma 99.9 5.2E-24 1.1E-28 221.0 14.8 136 534-673 16-151 (257)
56 cd03252 ABCC_Hemolysin The ABC 99.9 5.4E-24 1.2E-28 218.2 14.7 132 538-672 1-132 (237)
57 cd03248 ABCC_TAP TAP, the Tran 99.9 7.3E-24 1.6E-28 215.7 15.0 137 534-672 8-144 (226)
58 COG2884 FtsE Predicted ATPase 99.9 1.6E-24 3.5E-29 205.2 9.1 129 538-669 2-139 (223)
59 cd03253 ABCC_ATM1_transporter 99.9 1E-23 2.3E-28 215.9 14.3 131 538-672 1-131 (236)
60 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 1.5E-23 3.2E-28 215.1 13.9 133 538-672 1-133 (238)
61 cd03245 ABCC_bacteriocin_expor 99.9 2.5E-23 5.4E-28 210.8 15.3 133 537-672 2-134 (220)
62 COG3839 MalK ABC-type sugar tr 99.9 1.1E-23 2.4E-28 221.5 12.8 128 537-669 3-135 (338)
63 COG1117 PstB ABC-type phosphat 99.9 8.3E-24 1.8E-28 203.9 10.6 125 536-663 6-141 (253)
64 cd03251 ABCC_MsbA MsbA is an e 99.9 2.2E-23 4.8E-28 213.2 14.3 133 538-673 1-133 (234)
65 PRK14257 phosphate ABC transpo 99.9 1.8E-23 3.9E-28 223.7 12.1 124 535-659 78-213 (329)
66 cd03250 ABCC_MRP_domain1 Domai 99.9 4.8E-23 1E-27 206.3 13.8 120 538-673 1-122 (204)
67 COG1126 GlnQ ABC-type polar am 99.9 2.5E-23 5.4E-28 201.5 11.0 128 537-668 2-137 (240)
68 COG3842 PotA ABC-type spermidi 99.9 4.1E-23 8.9E-28 218.4 13.1 127 536-667 4-136 (352)
69 PRK13650 cbiO cobalt transport 99.9 8.2E-23 1.8E-27 214.5 14.5 132 537-668 4-141 (279)
70 TIGR00960 3a0501s02 Type II (G 99.9 5E-23 1.1E-27 208.1 11.5 129 538-667 2-138 (216)
71 COG1116 TauB ABC-type nitrate/ 99.9 7.6E-23 1.7E-27 203.8 12.2 123 537-667 3-130 (248)
72 COG1122 CbiO ABC-type cobalt t 99.9 1.3E-22 2.9E-27 205.4 13.7 128 537-666 3-137 (235)
73 cd03290 ABCC_SUR1_N The SUR do 99.9 1.8E-22 3.8E-27 204.4 14.2 129 539-672 2-134 (218)
74 PRK13647 cbiO cobalt transport 99.9 1.5E-22 3.3E-27 211.9 13.6 130 537-668 4-139 (274)
75 COG1120 FepC ABC-type cobalami 99.9 1E-22 2.2E-27 206.6 11.7 124 537-663 2-134 (258)
76 cd03226 ABC_cobalt_CbiO_domain 99.9 9.5E-23 2.1E-27 204.3 11.0 125 539-668 1-127 (205)
77 cd03369 ABCC_NFT1 Domain 2 of 99.9 1.6E-22 3.5E-27 202.9 12.0 126 536-668 5-130 (207)
78 TIGR02314 ABC_MetN D-methionin 99.9 1.8E-22 3.9E-27 216.6 13.0 130 538-667 2-140 (343)
79 COG1135 AbcC ABC-type metal io 99.9 2.3E-22 5E-27 204.3 12.6 130 538-667 2-141 (339)
80 PRK14250 phosphate ABC transpo 99.9 3.5E-22 7.7E-27 205.3 13.5 124 537-663 3-127 (241)
81 cd03260 ABC_PstB_phosphate_tra 99.9 2.4E-22 5.2E-27 204.7 11.9 124 538-664 1-136 (227)
82 cd03261 ABC_Org_Solvent_Resist 99.9 1.8E-22 4E-27 206.6 11.0 126 538-666 1-135 (235)
83 PRK13635 cbiO cobalt transport 99.9 4.8E-22 1E-26 208.6 14.3 132 537-669 5-142 (279)
84 PRK13631 cbiO cobalt transport 99.9 5.2E-22 1.1E-26 211.8 14.6 128 537-664 21-173 (320)
85 PRK13632 cbiO cobalt transport 99.9 4.7E-22 1E-26 208.0 13.9 131 537-668 7-143 (271)
86 COG1127 Ttg2A ABC-type transpo 99.9 2.6E-22 5.6E-27 197.4 11.0 127 537-666 8-144 (263)
87 cd03266 ABC_NatA_sodium_export 99.9 3.9E-22 8.3E-27 201.8 12.6 126 538-664 2-133 (218)
88 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 3.2E-22 7E-27 202.4 12.0 128 538-665 1-138 (218)
89 cd03268 ABC_BcrA_bacitracin_re 99.9 3.3E-22 7.1E-27 200.9 11.7 122 538-664 1-123 (208)
90 PRK13642 cbiO cobalt transport 99.9 6.2E-22 1.3E-26 207.7 14.0 132 537-668 4-141 (277)
91 PRK11629 lolD lipoprotein tran 99.9 4.8E-22 1E-26 203.3 12.8 130 537-666 5-144 (233)
92 PRK13643 cbiO cobalt transport 99.9 5.7E-22 1.2E-26 209.0 13.6 129 538-666 2-143 (288)
93 COG3638 ABC-type phosphate/pho 99.9 5.4E-22 1.2E-26 194.6 12.3 124 537-662 3-142 (258)
94 cd03292 ABC_FtsE_transporter F 99.9 5.6E-22 1.2E-26 200.0 12.6 129 538-668 1-137 (214)
95 PRK13640 cbiO cobalt transport 99.9 8.1E-22 1.8E-26 207.3 14.2 132 536-668 4-144 (282)
96 PRK13637 cbiO cobalt transport 99.9 6.8E-22 1.5E-26 208.3 13.6 128 538-665 3-142 (287)
97 PRK10908 cell division protein 99.9 8.6E-22 1.9E-26 199.9 13.4 127 538-666 2-136 (222)
98 PRK14269 phosphate ABC transpo 99.9 4.4E-22 9.6E-27 205.2 11.3 122 538-662 3-133 (246)
99 TIGR02673 FtsE cell division A 99.9 6.1E-22 1.3E-26 199.8 12.1 127 538-666 2-136 (214)
100 PRK13646 cbiO cobalt transport 99.9 7.9E-22 1.7E-26 207.8 13.2 128 538-665 3-143 (286)
101 cd03264 ABC_drug_resistance_li 99.9 5.6E-22 1.2E-26 199.7 11.4 123 538-665 1-128 (211)
102 cd03256 ABC_PhnC_transporter A 99.9 8.3E-22 1.8E-26 202.4 12.7 126 538-665 1-142 (241)
103 cd03258 ABC_MetN_methionine_tr 99.9 8.6E-22 1.9E-26 201.4 12.6 130 538-667 2-140 (233)
104 PRK13652 cbiO cobalt transport 99.9 1.2E-21 2.7E-26 205.4 13.9 129 538-668 4-138 (277)
105 cd03225 ABC_cobalt_CbiO_domain 99.9 8.6E-22 1.9E-26 198.3 12.2 127 539-666 1-133 (211)
106 cd03263 ABC_subfamily_A The AB 99.9 7.4E-22 1.6E-26 200.1 11.8 125 538-664 1-130 (220)
107 TIGR02315 ABC_phnC phosphonate 99.9 1.1E-21 2.4E-26 201.9 13.1 126 538-665 2-143 (243)
108 PRK11650 ugpC glycerol-3-phosp 99.9 1.2E-21 2.6E-26 211.8 14.0 127 537-667 3-134 (356)
109 COG3840 ThiQ ABC-type thiamine 99.9 5.7E-22 1.2E-26 186.4 9.6 124 538-668 2-130 (231)
110 cd03259 ABC_Carb_Solutes_like 99.9 5E-22 1.1E-26 200.3 9.9 124 538-666 1-129 (213)
111 cd03262 ABC_HisP_GlnQ_permease 99.9 9.2E-22 2E-26 198.3 11.7 126 538-666 1-134 (213)
112 PRK10584 putative ABC transpor 99.9 1.4E-21 2.9E-26 199.3 13.0 132 537-668 6-147 (228)
113 cd03219 ABC_Mj1267_LivG_branch 99.9 8.6E-22 1.9E-26 201.7 11.6 123 538-663 1-139 (236)
114 PRK11153 metN DL-methionine tr 99.9 1.2E-21 2.7E-26 211.2 13.2 129 538-666 2-139 (343)
115 TIGR02211 LolD_lipo_ex lipopro 99.9 1.6E-21 3.5E-26 197.7 13.2 129 538-666 2-140 (221)
116 COG1136 SalX ABC-type antimicr 99.9 2E-21 4.4E-26 193.5 13.4 128 538-665 2-140 (226)
117 PRK10575 iron-hydroxamate tran 99.9 1.3E-21 2.8E-26 204.0 12.6 129 537-668 11-148 (265)
118 PRK11432 fbpC ferric transport 99.9 1.5E-21 3.2E-26 210.5 13.2 126 537-667 6-136 (351)
119 PRK13636 cbiO cobalt transport 99.9 1.8E-21 3.9E-26 204.7 13.5 128 537-666 5-140 (283)
120 PRK13634 cbiO cobalt transport 99.9 1.6E-21 3.4E-26 205.9 13.0 121 538-658 3-135 (290)
121 cd03296 ABC_CysA_sulfate_impor 99.9 1.7E-21 3.7E-26 200.0 12.6 124 538-666 3-135 (239)
122 cd03224 ABC_TM1139_LivF_branch 99.9 1.4E-21 3.1E-26 198.2 11.8 98 538-638 1-100 (222)
123 PRK10247 putative ABC transpor 99.9 2.7E-21 5.8E-26 196.7 13.8 119 537-659 7-128 (225)
124 cd03231 ABC_CcmA_heme_exporter 99.9 2.5E-21 5.4E-26 193.5 13.3 122 538-665 1-123 (201)
125 TIGR03265 PhnT2 putative 2-ami 99.9 1.4E-21 3.1E-26 210.9 12.4 126 537-667 4-134 (353)
126 PRK13644 cbiO cobalt transport 99.9 2.7E-21 5.7E-26 202.5 14.1 127 538-666 2-135 (274)
127 PRK13540 cytochrome c biogenes 99.9 2.6E-21 5.6E-26 193.2 13.3 120 538-662 2-122 (200)
128 cd03301 ABC_MalK_N The N-termi 99.9 1.9E-21 4.2E-26 196.0 12.3 124 538-666 1-129 (213)
129 TIGR01189 ccmA heme ABC export 99.9 1.8E-21 3.9E-26 194.0 11.6 124 538-665 1-125 (198)
130 cd03235 ABC_Metallic_Cations A 99.9 1.1E-21 2.4E-26 197.7 10.1 120 539-666 1-131 (213)
131 TIGR03005 ectoine_ehuA ectoine 99.9 2E-21 4.3E-26 201.1 12.0 127 538-667 1-146 (252)
132 PRK13548 hmuV hemin importer A 99.9 3.7E-21 8E-26 199.8 14.0 126 538-666 3-133 (258)
133 PRK11231 fecE iron-dicitrate t 99.9 2.5E-21 5.3E-26 200.8 12.6 126 538-666 3-137 (255)
134 PRK13633 cobalt transporter AT 99.9 3.8E-21 8.1E-26 202.1 14.1 133 537-669 4-146 (280)
135 TIGR00972 3a0107s01c2 phosphat 99.9 1.9E-21 4.1E-26 200.6 11.5 118 538-658 2-131 (247)
136 TIGR02982 heterocyst_DevA ABC 99.9 2.2E-21 4.8E-26 196.6 11.8 130 538-667 2-141 (220)
137 PRK13651 cobalt transporter AT 99.9 3.7E-21 8.1E-26 204.0 13.6 129 538-666 3-164 (305)
138 cd03293 ABC_NrtD_SsuB_transpor 99.9 2.7E-21 5.8E-26 196.0 11.8 126 538-668 1-132 (220)
139 cd03218 ABC_YhbG The ABC trans 99.9 3.1E-21 6.7E-26 197.1 12.3 124 538-664 1-130 (232)
140 cd03295 ABC_OpuCA_Osmoprotecti 99.9 3E-21 6.4E-26 198.6 12.1 120 538-659 1-125 (242)
141 cd03265 ABC_DrrA DrrA is the A 99.9 2.7E-21 5.9E-26 196.0 11.7 125 538-666 1-130 (220)
142 TIGR03873 F420-0_ABC_ATP propo 99.8 3.8E-21 8.2E-26 199.5 12.7 126 538-666 2-136 (256)
143 PRK13648 cbiO cobalt transport 99.8 5.4E-21 1.2E-25 199.8 14.0 130 537-667 7-142 (269)
144 PRK09536 btuD corrinoid ABC tr 99.8 3.2E-21 6.9E-26 210.6 12.7 125 537-664 3-136 (402)
145 PRK11124 artP arginine transpo 99.8 3.1E-21 6.7E-26 198.5 11.8 128 538-668 3-142 (242)
146 PRK14242 phosphate transporter 99.8 3.5E-21 7.5E-26 199.4 12.0 122 537-661 6-139 (253)
147 TIGR03608 L_ocin_972_ABC putat 99.8 2.8E-21 6.1E-26 193.7 10.9 124 540-666 1-133 (206)
148 PRK10851 sulfate/thiosulfate t 99.8 3.7E-21 8E-26 207.7 12.5 125 538-667 3-136 (353)
149 PRK14235 phosphate transporter 99.8 3.4E-21 7.3E-26 201.1 11.8 124 535-661 17-153 (267)
150 PRK10744 pstB phosphate transp 99.8 5.4E-21 1.2E-25 198.8 13.3 122 535-659 11-144 (260)
151 PRK09452 potA putrescine/sperm 99.8 5E-21 1.1E-25 207.9 13.6 128 537-669 14-146 (375)
152 PRK11247 ssuB aliphatic sulfon 99.8 5.2E-21 1.1E-25 198.2 13.1 120 537-666 12-132 (257)
153 PRK09493 glnQ glutamine ABC tr 99.8 3.5E-21 7.5E-26 197.8 11.7 126 538-666 2-135 (240)
154 PRK14259 phosphate ABC transpo 99.8 5.4E-21 1.2E-25 199.7 13.2 120 536-658 12-141 (269)
155 cd03269 ABC_putative_ATPase Th 99.8 3.2E-21 7E-26 194.0 11.1 121 538-665 1-126 (210)
156 TIGR03410 urea_trans_UrtE urea 99.8 4.5E-21 9.7E-26 195.7 12.1 98 538-638 1-100 (230)
157 PRK11000 maltose/maltodextrin 99.8 5.3E-21 1.2E-25 208.0 13.4 126 537-667 3-133 (369)
158 PRK13538 cytochrome c biogenes 99.8 5.3E-21 1.2E-25 191.6 12.3 124 538-665 2-127 (204)
159 cd03246 ABCC_Protease_Secretio 99.8 4.4E-21 9.5E-26 187.1 11.3 96 538-634 1-96 (173)
160 PRK13649 cbiO cobalt transport 99.8 5.7E-21 1.2E-25 200.8 13.0 121 538-658 3-135 (280)
161 TIGR03258 PhnT 2-aminoethylpho 99.8 4.2E-21 9E-26 207.7 12.2 129 535-668 3-138 (362)
162 cd03294 ABC_Pro_Gly_Bertaine T 99.8 2.3E-21 4.9E-26 202.5 9.4 127 539-668 26-161 (269)
163 PRK14237 phosphate transporter 99.8 5.1E-21 1.1E-25 199.7 11.9 123 536-661 19-153 (267)
164 PRK14273 phosphate ABC transpo 99.8 6.5E-21 1.4E-25 197.5 12.5 121 536-659 6-138 (254)
165 PRK10253 iron-enterobactin tra 99.8 6.5E-21 1.4E-25 198.7 12.4 127 537-666 7-142 (265)
166 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 8.2E-21 1.8E-25 191.8 12.5 121 537-663 4-135 (254)
167 PRK13639 cbiO cobalt transport 99.8 7.1E-21 1.5E-25 199.5 12.6 127 538-666 2-136 (275)
168 TIGR00968 3a0106s01 sulfate AB 99.8 8.2E-21 1.8E-25 194.7 12.7 124 538-666 1-129 (237)
169 cd03298 ABC_ThiQ_thiamine_tran 99.8 1.1E-20 2.4E-25 190.3 13.3 125 538-669 1-130 (211)
170 PRK11300 livG leucine/isoleuci 99.8 8.3E-21 1.8E-25 196.8 12.7 126 537-665 5-151 (255)
171 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 8.4E-21 1.8E-25 194.5 12.6 122 538-663 2-128 (236)
172 PRK11831 putative ABC transpor 99.8 5.9E-21 1.3E-25 199.5 11.6 126 537-665 7-141 (269)
173 cd03300 ABC_PotA_N PotA is an 99.8 6.8E-21 1.5E-25 194.7 11.8 126 538-668 1-131 (232)
174 PRK14247 phosphate ABC transpo 99.8 4.4E-21 9.5E-26 198.3 10.5 121 537-660 3-135 (250)
175 PRK13539 cytochrome c biogenes 99.8 1.2E-20 2.5E-25 189.6 13.2 120 538-663 3-123 (207)
176 PRK11607 potG putrescine trans 99.8 8.5E-21 1.8E-25 206.4 12.9 127 537-668 19-150 (377)
177 PRK13645 cbiO cobalt transport 99.8 1.2E-20 2.7E-25 199.1 13.8 123 535-657 4-139 (289)
178 PRK10619 histidine/lysine/argi 99.8 7.1E-21 1.5E-25 197.6 11.4 123 536-661 4-145 (257)
179 TIGR01277 thiQ thiamine ABC tr 99.8 1.2E-20 2.7E-25 190.2 12.7 124 539-669 2-130 (213)
180 PRK14267 phosphate ABC transpo 99.8 5.1E-21 1.1E-25 198.1 10.2 121 537-660 4-138 (253)
181 cd03233 ABC_PDR_domain1 The pl 99.8 6.5E-21 1.4E-25 190.7 10.6 99 538-637 4-107 (202)
182 PRK14240 phosphate transporter 99.8 9.8E-21 2.1E-25 195.7 12.2 122 536-660 2-135 (250)
183 TIGR03411 urea_trans_UrtD urea 99.8 1.4E-20 3.1E-25 193.5 13.1 123 538-663 3-139 (242)
184 TIGR01186 proV glycine betaine 99.8 6.6E-21 1.4E-25 205.7 11.0 115 553-667 6-129 (363)
185 PRK14251 phosphate ABC transpo 99.8 6E-21 1.3E-25 197.4 10.2 119 537-658 4-134 (251)
186 cd03247 ABCC_cytochrome_bd The 99.8 5.9E-21 1.3E-25 187.1 9.6 95 538-634 1-95 (178)
187 PRK13638 cbiO cobalt transport 99.8 1.2E-20 2.5E-25 197.4 12.4 123 538-663 2-132 (271)
188 PRK14249 phosphate ABC transpo 99.8 1.5E-20 3.2E-25 194.5 13.0 122 537-661 4-137 (251)
189 PRK14274 phosphate ABC transpo 99.8 1.6E-20 3.5E-25 195.2 13.1 122 537-661 12-145 (259)
190 cd03257 ABC_NikE_OppD_transpor 99.8 1.9E-20 4.2E-25 190.6 13.4 128 538-665 2-143 (228)
191 PRK10895 lipopolysaccharide AB 99.8 1.4E-20 3.1E-25 193.4 12.5 122 538-662 4-132 (241)
192 PRK14261 phosphate ABC transpo 99.8 9.8E-21 2.1E-25 196.0 11.2 120 537-659 6-137 (253)
193 PRK14260 phosphate ABC transpo 99.8 8.9E-21 1.9E-25 197.1 10.7 124 536-662 6-141 (259)
194 COG4619 ABC-type uncharacteriz 99.8 4.3E-21 9.2E-26 178.2 7.4 110 552-661 15-126 (223)
195 PRK11614 livF leucine/isoleuci 99.8 1.6E-20 3.5E-25 192.5 12.5 99 537-638 5-105 (237)
196 PRK14236 phosphate transporter 99.8 1.2E-20 2.5E-25 197.6 11.5 124 535-661 23-158 (272)
197 PRK13641 cbiO cobalt transport 99.8 2.1E-20 4.5E-25 197.1 13.3 129 538-666 3-144 (287)
198 PRK10771 thiQ thiamine transpo 99.8 2.4E-20 5.2E-25 190.6 13.3 123 538-667 2-129 (232)
199 PRK14256 phosphate ABC transpo 99.8 1.8E-20 3.9E-25 193.9 12.5 123 536-661 3-138 (252)
200 PRK13547 hmuV hemin importer A 99.8 2.1E-20 4.5E-25 195.3 12.8 123 538-663 2-141 (272)
201 PRK14266 phosphate ABC transpo 99.8 2E-20 4.3E-25 193.4 12.3 122 538-662 4-137 (250)
202 cd03229 ABC_Class3 This class 99.8 1.4E-20 3E-25 184.5 10.5 96 538-636 1-99 (178)
203 PRK11264 putative amino-acid A 99.8 1.7E-20 3.8E-25 193.8 11.9 123 538-663 4-140 (250)
204 PRK14238 phosphate transporter 99.8 2.3E-20 5E-25 195.2 12.9 98 537-637 24-128 (271)
205 PRK14243 phosphate transporter 99.8 2.2E-20 4.8E-25 194.6 12.5 123 537-662 10-142 (264)
206 TIGR02769 nickel_nikE nickel i 99.8 2.2E-20 4.7E-25 194.8 12.4 121 538-658 3-140 (265)
207 PRK14252 phosphate ABC transpo 99.8 2.4E-20 5.2E-25 194.5 12.6 124 535-661 14-151 (265)
208 cd03230 ABC_DR_subfamily_A Thi 99.8 1.9E-20 4.1E-25 182.7 10.7 95 538-636 1-96 (173)
209 PRK11248 tauB taurine transpor 99.8 2.9E-20 6.3E-25 192.6 12.8 121 538-666 2-127 (255)
210 PRK14270 phosphate ABC transpo 99.8 2.6E-20 5.7E-25 192.6 12.4 121 537-660 4-136 (251)
211 PRK14248 phosphate ABC transpo 99.8 3E-20 6.6E-25 194.0 13.0 119 537-658 21-151 (268)
212 PRK14239 phosphate transporter 99.8 2.4E-20 5.2E-25 193.0 12.0 120 537-659 5-136 (252)
213 PRK14264 phosphate ABC transpo 99.8 4E-20 8.6E-25 196.5 14.0 122 535-659 43-188 (305)
214 TIGR01288 nodI ATP-binding ABC 99.8 2.6E-20 5.5E-25 197.9 12.4 123 537-663 4-131 (303)
215 PRK14268 phosphate ABC transpo 99.8 2.7E-20 5.9E-25 193.3 12.3 119 537-658 12-141 (258)
216 PRK13537 nodulation ABC transp 99.8 2.5E-20 5.3E-25 198.1 12.1 121 537-661 7-132 (306)
217 PRK14262 phosphate ABC transpo 99.8 2E-20 4.4E-25 193.3 11.2 121 537-660 3-135 (250)
218 cd03291 ABCC_CFTR1 The CFTR su 99.8 6.4E-20 1.4E-24 192.2 15.0 117 535-672 37-153 (282)
219 TIGR03522 GldA_ABC_ATP gliding 99.8 2.3E-20 5.1E-25 198.0 11.8 124 538-665 3-131 (301)
220 PRK14253 phosphate ABC transpo 99.8 3E-20 6.6E-25 191.9 12.2 122 537-661 3-135 (249)
221 cd03234 ABCG_White The White s 99.8 1.9E-20 4.2E-25 190.5 10.4 97 538-637 4-105 (226)
222 PRK10070 glycine betaine trans 99.8 3E-20 6.5E-25 202.9 12.5 114 555-668 43-165 (400)
223 PRK14271 phosphate ABC transpo 99.8 3E-20 6.6E-25 194.7 12.0 120 537-659 21-151 (276)
224 cd03228 ABCC_MRP_Like The MRP 99.8 3E-20 6.6E-25 180.8 11.1 96 538-634 1-96 (171)
225 PRK15079 oligopeptide ABC tran 99.8 3.5E-20 7.6E-25 198.6 12.2 130 537-666 8-160 (331)
226 PRK09984 phosphonate/organopho 99.8 4.7E-20 1E-24 192.0 12.8 128 537-667 4-152 (262)
227 TIGR01166 cbiO cobalt transpor 99.8 3.7E-20 8.1E-25 183.3 11.2 115 553-667 5-127 (190)
228 PRK14245 phosphate ABC transpo 99.8 2.2E-20 4.8E-25 193.0 9.8 122 537-661 3-136 (250)
229 PRK14254 phosphate ABC transpo 99.8 7.5E-20 1.6E-24 192.6 13.9 121 536-659 38-168 (285)
230 PRK14275 phosphate ABC transpo 99.8 3.4E-20 7.3E-25 195.4 11.2 119 537-658 39-169 (286)
231 cd03299 ABC_ModC_like Archeal 99.8 4.9E-20 1.1E-24 188.7 12.0 124 538-667 1-129 (235)
232 PRK14244 phosphate ABC transpo 99.8 2.1E-20 4.6E-25 193.3 9.2 120 538-660 6-138 (251)
233 TIGR03740 galliderm_ABC gallid 99.8 4E-20 8.8E-25 187.8 11.1 121 538-665 1-122 (223)
234 PRK13541 cytochrome c biogenes 99.8 6.3E-20 1.4E-24 182.5 11.6 119 538-665 2-121 (195)
235 PRK13543 cytochrome c biogenes 99.8 9.4E-20 2E-24 183.9 13.1 121 537-663 11-133 (214)
236 PRK14258 phosphate ABC transpo 99.8 6.3E-20 1.4E-24 190.9 11.9 123 536-661 6-140 (261)
237 PRK14241 phosphate transporter 99.8 5.8E-20 1.3E-24 190.9 11.4 120 537-659 4-136 (258)
238 PRK13536 nodulation factor exp 99.8 7.3E-20 1.6E-24 196.7 12.2 120 537-660 41-165 (340)
239 COG1118 CysA ABC-type sulfate/ 99.8 3.6E-20 7.9E-25 187.9 9.2 127 537-668 2-138 (345)
240 PRK14255 phosphate ABC transpo 99.8 5E-20 1.1E-24 190.6 10.2 120 537-659 5-136 (252)
241 TIGR01978 sufC FeS assembly AT 99.8 5.8E-20 1.2E-24 189.0 10.5 118 538-658 1-133 (243)
242 PRK14265 phosphate ABC transpo 99.8 1E-19 2.2E-24 190.6 12.3 122 537-661 20-151 (274)
243 PRK15112 antimicrobial peptide 99.8 1.4E-19 2.9E-24 189.0 13.1 126 537-662 4-144 (267)
244 TIGR02324 CP_lyasePhnL phospho 99.8 1.6E-19 3.5E-24 183.5 12.5 123 538-660 2-141 (224)
245 PRK14263 phosphate ABC transpo 99.8 1.1E-19 2.4E-24 189.0 11.5 123 537-662 8-140 (261)
246 cd03223 ABCD_peroxisomal_ALDP 99.8 1E-19 2.3E-24 176.2 10.6 96 538-647 1-96 (166)
247 PRK14246 phosphate ABC transpo 99.8 1.6E-19 3.4E-24 187.4 12.3 121 536-659 9-141 (257)
248 PRK14272 phosphate ABC transpo 99.8 1.5E-19 3.2E-24 187.1 11.9 99 537-638 4-110 (252)
249 PRK11144 modC molybdate transp 99.8 2E-19 4.3E-24 194.8 12.6 122 538-667 2-128 (352)
250 cd03213 ABCG_EPDR ABCG transpo 99.8 1.3E-19 2.7E-24 180.2 9.9 99 537-638 3-107 (194)
251 cd03232 ABC_PDR_domain2 The pl 99.8 1.3E-19 2.9E-24 179.7 10.1 97 537-637 3-103 (192)
252 PRK15056 manganese/iron transp 99.8 2.4E-19 5.1E-24 187.7 11.7 123 537-665 6-140 (272)
253 PRK11308 dppF dipeptide transp 99.8 3.3E-19 7.2E-24 190.9 12.9 130 537-666 5-153 (327)
254 TIGR03415 ABC_choXWV_ATP choli 99.8 2.3E-19 4.9E-24 194.7 11.3 123 541-666 28-163 (382)
255 cd03215 ABC_Carb_Monos_II This 99.8 2.5E-19 5.5E-24 176.2 10.6 94 537-637 4-102 (182)
256 PRK15439 autoinducer 2 ABC tra 99.8 3.2E-19 6.9E-24 202.9 12.9 124 537-663 11-136 (510)
257 COG1131 CcmA ABC-type multidru 99.8 3.1E-19 6.8E-24 188.1 11.0 134 537-674 4-147 (293)
258 PRK10419 nikE nickel transport 99.8 5.9E-19 1.3E-23 184.3 12.1 121 538-658 4-141 (268)
259 PRK11701 phnK phosphonate C-P 99.8 9.4E-19 2E-23 181.8 13.3 126 537-665 6-149 (258)
260 cd03297 ABC_ModC_molybdenum_tr 99.8 5E-19 1.1E-23 178.6 10.6 121 538-665 2-129 (214)
261 PRK09544 znuC high-affinity zi 99.8 9.8E-19 2.1E-23 180.7 12.9 113 537-666 4-119 (251)
262 TIGR02142 modC_ABC molybdenum 99.8 6.9E-19 1.5E-23 190.8 12.2 122 542-668 4-132 (354)
263 PRK11022 dppD dipeptide transp 99.8 7.8E-19 1.7E-23 188.0 12.4 122 538-659 4-142 (326)
264 TIGR01188 drrA daunorubicin re 99.8 4.6E-19 9.9E-24 188.3 10.4 110 553-663 6-120 (302)
265 PRK11288 araG L-arabinose tran 99.8 8.4E-19 1.8E-23 199.1 12.8 120 537-659 4-132 (501)
266 COG1124 DppF ABC-type dipeptid 99.8 1.6E-18 3.6E-23 171.4 12.5 131 537-667 3-141 (252)
267 PRK13549 xylose transporter AT 99.8 1E-18 2.3E-23 198.6 12.7 121 537-660 5-136 (506)
268 COG4559 ABC-type hemin transpo 99.8 1.3E-18 2.8E-23 167.9 10.9 134 538-674 2-146 (259)
269 PRK10418 nikD nickel transport 99.8 1.4E-18 3.1E-23 180.0 11.8 117 537-659 4-129 (254)
270 CHL00131 ycf16 sulfate ABC tra 99.8 1.4E-18 3.1E-23 179.7 11.7 126 537-665 7-148 (252)
271 PRK09700 D-allose transporter 99.8 8.2E-19 1.8E-23 199.7 10.7 121 537-660 5-138 (510)
272 PRK10535 macrolide transporter 99.8 1.9E-18 4E-23 201.5 13.8 132 537-668 4-145 (648)
273 TIGR02323 CP_lyasePhnK phospho 99.8 2.4E-18 5.1E-23 178.2 13.0 119 537-658 3-138 (253)
274 PRK10762 D-ribose transporter 99.8 8.5E-19 1.8E-23 199.1 10.6 133 537-672 4-150 (501)
275 PRK03695 vitamin B12-transport 99.8 1.9E-18 4.2E-23 178.3 11.8 120 539-666 2-125 (248)
276 PRK15093 antimicrobial peptide 99.8 2E-18 4.3E-23 185.4 12.3 122 538-659 4-147 (330)
277 PRK09473 oppD oligopeptide tra 99.8 2.4E-18 5.1E-23 184.5 12.1 122 537-658 12-149 (330)
278 COG0410 LivF ABC-type branched 99.8 2E-18 4.2E-23 169.8 10.2 98 537-637 3-102 (237)
279 KOG0064 Peroxisomal long-chain 99.8 6.1E-15 1.3E-19 158.4 37.3 446 181-671 124-606 (728)
280 cd03217 ABC_FeS_Assembly ABC-t 99.8 2.1E-18 4.6E-23 172.2 10.2 94 538-634 1-98 (200)
281 cd03267 ABC_NatA_like Similar 99.8 2.4E-18 5.3E-23 176.3 10.2 110 553-663 34-149 (236)
282 PF00005 ABC_tran: ABC transpo 99.8 1.6E-18 3.4E-23 162.1 8.0 97 556-661 1-98 (137)
283 PRK10938 putative molybdenum t 99.7 6.9E-18 1.5E-22 191.2 12.5 122 538-666 4-134 (490)
284 PRK10982 galactose/methyl gala 99.7 3E-18 6.4E-23 194.3 9.4 128 540-670 1-141 (491)
285 TIGR02633 xylG D-xylose ABC tr 99.7 8.1E-18 1.8E-22 191.2 13.0 118 538-658 2-131 (500)
286 COG0411 LivG ABC-type branched 99.7 1.5E-18 3.3E-23 171.8 6.1 122 538-662 5-144 (250)
287 COG3845 ABC-type uncharacteriz 99.7 3.9E-18 8.5E-23 183.2 9.7 134 537-673 4-150 (501)
288 PRK09580 sufC cysteine desulfu 99.7 1.2E-17 2.5E-22 172.4 13.0 94 538-634 2-99 (248)
289 COG4525 TauB ABC-type taurine 99.7 5.8E-18 1.3E-22 161.1 9.7 125 538-668 4-137 (259)
290 cd03214 ABC_Iron-Siderophores_ 99.7 3.8E-18 8.2E-23 167.5 8.7 80 539-621 1-80 (180)
291 COG4136 ABC-type uncharacteriz 99.7 5.8E-18 1.3E-22 154.5 8.9 126 537-667 2-134 (213)
292 PRK10261 glutathione transport 99.7 1E-17 2.2E-22 194.6 13.5 130 537-666 313-462 (623)
293 COG4175 ProV ABC-type proline/ 99.7 6.9E-18 1.5E-22 171.5 9.6 132 537-668 4-165 (386)
294 COG1129 MglA ABC-type sugar tr 99.7 1.5E-17 3.2E-22 182.3 12.7 100 537-639 8-109 (500)
295 cd03216 ABC_Carb_Monos_I This 99.7 1E-17 2.2E-22 161.8 9.9 81 538-621 1-82 (163)
296 COG4181 Predicted ABC-type tra 99.7 8.6E-18 1.9E-22 156.8 9.0 132 537-668 6-147 (228)
297 COG4604 CeuD ABC-type enteroch 99.7 6.2E-18 1.3E-22 161.3 7.4 127 538-667 2-139 (252)
298 cd00820 PEPCK_HprK Phosphoenol 99.7 3.9E-18 8.4E-23 150.6 5.4 76 553-636 2-77 (107)
299 TIGR01184 ntrCD nitrate transp 99.7 1.6E-17 3.4E-22 169.6 10.0 105 556-665 1-112 (230)
300 PRK15134 microcin C ABC transp 99.7 1.4E-17 3.1E-22 190.4 10.3 128 537-665 275-423 (529)
301 COG1137 YhbG ABC-type (unclass 99.7 1.6E-18 3.4E-23 165.8 1.5 98 537-637 4-103 (243)
302 PRK10261 glutathione transport 99.7 3.1E-17 6.7E-22 190.6 12.1 122 537-658 12-156 (623)
303 TIGR01257 rim_protein retinal- 99.7 4E-17 8.7E-22 204.6 13.4 128 536-665 927-1059(2272)
304 TIGR03269 met_CoM_red_A2 methy 99.7 2.8E-17 6.1E-22 187.6 11.1 122 537-658 279-413 (520)
305 PRK15134 microcin C ABC transp 99.7 3.9E-17 8.4E-22 186.8 11.8 123 537-659 5-145 (529)
306 PRK13549 xylose transporter AT 99.7 2.6E-17 5.6E-22 187.2 10.1 122 537-658 259-395 (506)
307 TIGR03269 met_CoM_red_A2 methy 99.7 4.1E-17 8.9E-22 186.2 11.3 126 538-666 1-167 (520)
308 PRK09700 D-allose transporter 99.7 3.1E-17 6.7E-22 186.8 10.0 117 537-658 265-399 (510)
309 TIGR02633 xylG D-xylose ABC tr 99.7 5.5E-17 1.2E-21 184.4 9.9 122 537-658 257-393 (500)
310 cd03236 ABC_RNaseL_inhibitor_d 99.7 7.7E-17 1.7E-21 166.8 9.0 122 541-666 4-138 (255)
311 TIGR00955 3a01204 The Eye Pigm 99.7 3.3E-17 7.2E-22 190.1 6.9 99 536-638 16-124 (617)
312 TIGR00956 3a01205 Pleiotropic 99.7 1.3E-16 2.9E-21 199.1 12.7 124 537-665 759-895 (1394)
313 TIGR01257 rim_protein retinal- 99.7 1.4E-16 3E-21 199.9 12.9 128 537-667 1937-2070(2272)
314 PRK11819 putative ABC transpor 99.7 1.1E-16 2.4E-21 183.9 11.1 88 537-637 6-94 (556)
315 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 1.3E-16 2.8E-21 162.2 9.7 112 538-663 23-138 (224)
316 PLN03211 ABC transporter G-25; 99.7 1.1E-16 2.3E-21 186.2 9.8 112 540-659 71-193 (659)
317 TIGR03771 anch_rpt_ABC anchore 99.7 1.2E-16 2.7E-21 162.2 8.9 102 561-667 1-113 (223)
318 TIGR02770 nickel_nikD nickel i 99.7 1.7E-16 3.6E-21 162.1 9.6 102 555-658 1-113 (230)
319 PRK15064 ABC transporter ATP-b 99.7 3.5E-16 7.6E-21 179.0 12.7 86 538-637 2-88 (530)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 2.2E-16 4.8E-21 181.3 10.7 88 537-637 4-92 (552)
321 PRK10938 putative molybdenum t 99.6 2.7E-16 5.9E-21 178.2 10.1 120 537-659 260-392 (490)
322 cd03237 ABC_RNaseL_inhibitor_d 99.6 4.3E-16 9.4E-21 160.4 10.7 107 545-665 1-113 (246)
323 PRK15064 ABC transporter ATP-b 99.6 6.5E-16 1.4E-20 176.8 13.2 114 537-665 319-436 (530)
324 COG4133 CcmA ABC-type transpor 99.6 1.9E-16 4.2E-21 150.5 6.8 124 540-668 5-130 (209)
325 COG4555 NatA ABC-type Na+ tran 99.6 3E-16 6.4E-21 150.5 8.1 133 538-673 2-143 (245)
326 PRK13545 tagH teichoic acids e 99.6 9.4E-16 2E-20 170.0 13.2 118 537-667 21-143 (549)
327 PRK10762 D-ribose transporter 99.6 3.3E-16 7.1E-21 178.0 9.3 113 537-657 257-384 (501)
328 COG1123 ATPase components of v 99.6 9.8E-16 2.1E-20 169.2 12.5 130 537-666 280-428 (539)
329 PRK13546 teichoic acids export 99.6 1.3E-15 2.8E-20 158.5 11.4 101 553-666 37-142 (264)
330 PRK11288 araG L-arabinose tran 99.6 5.4E-16 1.2E-20 176.2 8.6 114 537-657 257-385 (501)
331 COG4608 AppF ABC-type oligopep 99.6 9.5E-16 2.1E-20 155.2 9.3 100 537-668 4-110 (268)
332 PRK11819 putative ABC transpor 99.6 2.4E-15 5.3E-20 172.8 13.2 108 537-658 324-435 (556)
333 COG0444 DppD ABC-type dipeptid 99.6 1.4E-15 3E-20 157.2 9.7 129 538-666 2-152 (316)
334 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 1.3E-15 2.8E-20 143.9 8.5 70 538-621 1-70 (144)
335 cd00267 ABC_ATPase ABC (ATP-bi 99.6 1.7E-15 3.7E-20 145.3 9.4 79 540-621 2-80 (157)
336 COG4148 ModC ABC-type molybdat 99.6 1E-15 2.2E-20 153.3 8.0 110 557-668 15-129 (352)
337 PRK11147 ABC transporter ATPas 99.6 3.1E-15 6.8E-20 174.4 13.2 122 537-672 319-449 (635)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 3E-15 6.6E-20 172.0 12.9 108 537-658 322-433 (552)
339 PLN03140 ABC transporter G fam 99.6 7.2E-15 1.6E-19 183.2 13.8 125 536-664 866-1011(1470)
340 PRK15177 Vi polysaccharide exp 99.6 2.8E-15 6.1E-20 151.2 8.1 70 555-637 2-73 (213)
341 PRK15439 autoinducer 2 ABC tra 99.6 4.7E-15 1E-19 168.8 9.8 114 537-658 268-393 (510)
342 PRK10982 galactose/methyl gala 99.6 4.2E-15 9.2E-20 168.5 9.4 92 537-633 250-346 (491)
343 COG1123 ATPase components of v 99.6 6.5E-15 1.4E-19 162.8 9.8 127 537-663 5-148 (539)
344 COG1101 PhnK ABC-type uncharac 99.6 3.8E-15 8.2E-20 144.3 6.5 119 551-669 17-139 (263)
345 COG1134 TagH ABC-type polysacc 99.6 8.6E-15 1.9E-19 145.5 8.7 107 552-670 39-150 (249)
346 COG1119 ModF ABC-type molybden 99.6 5.2E-15 1.1E-19 146.9 6.9 120 537-659 31-163 (257)
347 COG0396 sufC Cysteine desulfur 99.5 2.8E-14 6E-19 140.1 11.3 124 537-662 3-138 (251)
348 PLN03073 ABC transporter F fam 99.5 2.6E-14 5.6E-19 167.4 12.5 109 537-659 508-618 (718)
349 PRK13409 putative ATPase RIL; 99.5 2.7E-14 5.8E-19 164.3 11.6 112 537-666 340-452 (590)
350 COG4167 SapF ABC-type antimicr 99.5 1.3E-14 2.8E-19 136.8 6.8 103 553-658 26-139 (267)
351 COG4152 ABC-type uncharacteriz 99.5 1.3E-14 2.8E-19 143.1 6.9 132 537-675 2-142 (300)
352 PRK10636 putative ABC transpor 99.5 4.3E-14 9.3E-19 164.7 12.2 120 537-672 312-439 (638)
353 COG4598 HisP ABC-type histidin 99.5 1.3E-14 2.8E-19 136.6 5.3 126 537-666 6-151 (256)
354 TIGR01187 potA spermidine/putr 99.5 2.5E-14 5.5E-19 153.4 7.9 94 571-666 1-99 (325)
355 COG4161 ArtP ABC-type arginine 99.5 4.3E-14 9.2E-19 130.8 8.1 128 537-668 2-142 (242)
356 PRK10636 putative ABC transpor 99.5 7.9E-14 1.7E-18 162.4 10.8 83 538-634 2-84 (638)
357 COG4674 Uncharacterized ABC-ty 99.5 4.9E-14 1.1E-18 134.6 7.2 122 537-661 5-141 (249)
358 COG4172 ABC-type uncharacteriz 99.5 1.9E-13 4.1E-18 143.3 12.1 129 537-666 276-425 (534)
359 cd03222 ABC_RNaseL_inhibitor T 99.5 5.5E-14 1.2E-18 137.2 7.3 68 541-624 4-71 (177)
360 PRK13409 putative ATPase RIL; 99.5 2.4E-14 5.3E-19 164.6 4.7 115 541-663 77-208 (590)
361 KOG0061 Transporter, ABC super 99.5 3E-13 6.5E-18 156.0 12.4 120 536-658 24-156 (613)
362 TIGR00956 3a01205 Pleiotropic 99.4 7.4E-14 1.6E-18 174.6 7.0 85 552-637 73-162 (1394)
363 PRK11147 ABC transporter ATPas 99.4 2.7E-13 5.8E-18 158.3 10.9 83 538-634 4-87 (635)
364 COG0488 Uup ATPase components 99.4 3.8E-13 8.2E-18 151.3 10.9 88 537-638 3-91 (530)
365 PLN03140 ABC transporter G fam 99.4 1.7E-13 3.7E-18 171.0 7.3 82 553-637 178-263 (1470)
366 COG0488 Uup ATPase components 99.3 4.6E-12 9.9E-17 142.7 11.4 123 537-674 321-450 (530)
367 PLN03073 ABC transporter F fam 99.3 1.7E-12 3.6E-17 152.3 6.2 96 536-634 176-288 (718)
368 COG4172 ABC-type uncharacteriz 99.3 6.3E-12 1.4E-16 132.0 8.7 130 537-666 6-156 (534)
369 COG4778 PhnL ABC-type phosphon 99.3 3.1E-12 6.7E-17 119.7 4.7 86 538-623 5-102 (235)
370 COG4107 PhnK ABC-type phosphon 99.3 5E-12 1.1E-16 118.7 5.4 85 537-624 6-99 (258)
371 cd03238 ABC_UvrA The excision 99.2 1.6E-11 3.5E-16 119.7 7.3 61 552-621 7-67 (176)
372 KOG0059 Lipid exporter ABCA1 a 99.2 3.8E-11 8.2E-16 144.6 8.7 125 536-663 563-694 (885)
373 COG4586 ABC-type uncharacteriz 99.2 1.9E-11 4.1E-16 122.8 4.1 66 554-620 38-103 (325)
374 KOG0065 Pleiotropic drug resis 99.1 1.4E-10 3.1E-15 137.7 8.8 130 538-671 788-933 (1391)
375 TIGR03238 dnd_assoc_3 dnd syst 99.1 4.8E-11 1E-15 130.2 4.4 67 554-623 20-87 (504)
376 COG4138 BtuD ABC-type cobalami 99.1 1.1E-10 2.4E-15 109.8 5.4 114 538-660 4-118 (248)
377 PRK11098 microcin B17 transpor 99.0 3.1E-06 6.8E-11 92.4 38.0 266 191-474 108-394 (409)
378 PRK12369 putative transporter; 99.0 4.8E-06 1E-10 89.0 37.7 268 188-474 30-320 (326)
379 PF06472 ABC_membrane_2: ABC t 99.0 2.4E-06 5.1E-11 90.0 34.7 219 184-405 36-259 (281)
380 TIGR00767 rho transcription te 98.9 2.3E-09 5E-14 115.4 9.3 80 535-616 128-220 (415)
381 cd03278 ABC_SMC_barmotin Barmo 98.9 7.7E-10 1.7E-14 110.2 4.7 101 557-674 14-124 (197)
382 PRK00300 gmk guanylate kinase; 98.9 7.4E-10 1.6E-14 110.9 4.0 79 564-653 3-93 (205)
383 KOG2355 Predicted ABC-type tra 98.9 2.1E-09 4.5E-14 103.8 6.7 68 535-604 11-78 (291)
384 KOG0927 Predicted transporter 98.9 2.8E-09 6E-14 116.2 7.2 127 537-677 389-523 (614)
385 PF13748 ABC_membrane_3: ABC t 98.8 8.7E-06 1.9E-10 81.3 30.2 161 167-341 2-163 (237)
386 PRK10733 hflB ATP-dependent me 98.8 1.5E-10 3.3E-15 134.7 -5.2 121 353-474 41-169 (644)
387 COG3845 ABC-type uncharacteriz 98.8 3.3E-08 7.2E-13 107.4 12.1 101 537-639 257-363 (501)
388 PRK06002 fliI flagellum-specif 98.8 1.6E-08 3.4E-13 111.2 9.6 85 536-623 138-229 (450)
389 cd03279 ABC_sbcCD SbcCD and ot 98.8 4.3E-09 9.3E-14 106.2 3.3 115 537-667 5-123 (213)
390 cd03272 ABC_SMC3_euk Eukaryoti 98.7 1.1E-08 2.4E-13 105.2 5.7 99 537-657 3-128 (243)
391 cd01130 VirB11-like_ATPase Typ 98.7 2.7E-08 5.7E-13 98.3 6.7 99 555-656 14-122 (186)
392 COG2401 ABC-type ATPase fused 98.7 3.2E-08 7E-13 104.7 7.2 96 553-661 396-499 (593)
393 PRK01889 GTPase RsgA; Reviewed 98.7 1.2E-08 2.7E-13 110.6 4.2 101 556-659 185-287 (356)
394 TIGR02858 spore_III_AA stage I 98.6 2.7E-08 5.9E-13 103.5 5.0 67 567-633 112-179 (270)
395 KOG0066 eIF2-interacting prote 98.6 2.7E-08 5.9E-13 105.4 3.8 62 537-600 586-647 (807)
396 PRK07196 fliI flagellum-specif 98.6 4E-08 8.8E-13 107.9 5.1 82 553-635 143-234 (434)
397 cd03273 ABC_SMC2_euk Eukaryoti 98.6 3.5E-08 7.5E-13 102.2 4.4 93 566-658 25-137 (251)
398 cd03271 ABC_UvrA_II The excisi 98.5 4.1E-08 8.8E-13 101.7 3.6 103 555-659 10-160 (261)
399 PRK07721 fliI flagellum-specif 98.5 9.5E-08 2.1E-12 105.7 6.5 68 553-621 146-221 (438)
400 cd03283 ABC_MutS-like MutS-lik 98.5 4.3E-08 9.3E-13 97.8 2.5 88 553-656 14-102 (199)
401 COG4170 SapD ABC-type antimicr 98.5 9.4E-08 2E-12 92.7 4.6 107 553-659 20-147 (330)
402 cd03270 ABC_UvrA_I The excisio 98.5 6.7E-08 1.5E-12 98.4 3.8 35 552-586 7-42 (226)
403 TIGR02524 dot_icm_DotB Dot/Icm 98.5 1.6E-07 3.5E-12 101.7 6.4 89 564-654 132-233 (358)
404 cd03240 ABC_Rad50 The catalyti 98.5 9.9E-08 2.1E-12 95.6 4.4 74 560-637 17-100 (204)
405 PRK08149 ATP synthase SpaL; Va 98.5 2.5E-07 5.4E-12 101.6 7.4 69 553-622 139-214 (428)
406 COG1129 MglA ABC-type sugar tr 98.4 3.5E-07 7.6E-12 101.3 7.1 94 537-637 263-361 (500)
407 TIGR03263 guanyl_kin guanylate 98.4 2.4E-07 5.2E-12 90.7 3.9 78 566-654 1-90 (180)
408 PRK09825 idnK D-gluconate kina 98.4 4.3E-07 9.4E-12 88.8 5.1 67 565-637 2-70 (176)
409 cd00071 GMPK Guanosine monopho 98.3 2.3E-07 4.9E-12 86.9 2.9 74 569-653 2-88 (137)
410 PRK10078 ribose 1,5-bisphospho 98.3 5.9E-07 1.3E-11 88.6 5.4 54 566-622 2-55 (186)
411 cd03274 ABC_SMC4_euk Eukaryoti 98.3 1E-07 2.2E-12 96.1 -0.1 77 537-637 5-83 (212)
412 TIGR02788 VirB11 P-type DNA tr 98.3 1E-06 2.2E-11 94.0 7.0 94 559-655 137-239 (308)
413 cd01131 PilT Pilus retraction 98.3 1.3E-06 2.7E-11 87.2 6.9 84 568-656 3-97 (198)
414 PLN02796 D-glycerate 3-kinase 98.2 4.6E-07 9.9E-12 96.4 2.6 62 553-614 79-151 (347)
415 TIGR02322 phosphon_PhnN phosph 98.2 2.4E-06 5.3E-11 83.5 7.1 63 566-629 1-79 (179)
416 PRK15494 era GTPase Era; Provi 98.2 9.7E-07 2.1E-11 95.4 4.1 56 533-590 14-76 (339)
417 PRK06315 type III secretion sy 98.2 1.6E-06 3.4E-11 95.7 5.3 104 554-658 153-277 (442)
418 PRK05480 uridine/cytidine kina 98.2 3.2E-06 7E-11 84.9 6.5 70 564-655 4-78 (209)
419 TIGR03497 FliI_clade2 flagella 98.1 5E-06 1.1E-10 91.5 7.8 69 553-622 125-201 (413)
420 TIGR00235 udk uridine kinase. 98.1 1.7E-06 3.8E-11 86.8 3.5 29 564-592 4-32 (207)
421 PRK03846 adenylylsulfate kinas 98.1 2.1E-06 4.6E-11 85.6 4.0 56 564-623 22-78 (198)
422 KOG0065 Pleiotropic drug resis 98.0 7.5E-06 1.6E-10 98.5 7.2 83 552-637 127-213 (1391)
423 KOG0927 Predicted transporter 98.0 7.6E-06 1.6E-10 89.9 6.5 60 535-597 73-132 (614)
424 KOG0062 ATPase component of AB 97.9 8.4E-06 1.8E-10 89.1 5.1 51 535-588 78-128 (582)
425 cd01136 ATPase_flagellum-secre 97.9 8.3E-06 1.8E-10 86.9 4.9 53 552-605 56-108 (326)
426 KOG0062 ATPase component of AB 97.9 1.1E-05 2.5E-10 88.1 5.9 114 536-663 361-477 (582)
427 TIGR02546 III_secr_ATP type II 97.9 8.7E-06 1.9E-10 90.1 5.1 76 553-629 133-214 (422)
428 PRK06995 flhF flagellar biosyn 97.9 5.8E-06 1.3E-10 92.3 3.7 61 557-636 247-307 (484)
429 PRK07594 type III secretion sy 97.9 7E-06 1.5E-10 90.4 3.7 68 537-607 129-196 (433)
430 PRK09862 putative ATP-dependen 97.9 1E-05 2.3E-10 91.0 5.0 65 540-607 187-251 (506)
431 PRK10416 signal recognition pa 97.9 1.2E-05 2.6E-10 85.9 5.1 73 564-636 112-191 (318)
432 PRK09270 nucleoside triphospha 97.9 1.7E-05 3.6E-10 81.0 5.6 55 565-623 32-90 (229)
433 PRK09518 bifunctional cytidyla 97.9 8.3E-06 1.8E-10 96.7 3.8 64 567-635 2-118 (712)
434 PRK07960 fliI flagellum-specif 97.8 8.4E-06 1.8E-10 89.8 3.0 67 555-622 165-237 (455)
435 PF05992 SbmA_BacA: SbmA/BacA- 97.8 0.058 1.3E-06 56.6 34.7 51 422-472 260-310 (315)
436 PRK05688 fliI flagellum-specif 97.8 8.5E-06 1.8E-10 90.0 3.0 53 553-606 156-211 (451)
437 PLN02318 phosphoribulokinase/u 97.8 1.7E-05 3.6E-10 89.4 4.8 61 567-635 66-127 (656)
438 cd03275 ABC_SMC1_euk Eukaryoti 97.8 1.3E-05 2.9E-10 82.8 3.8 92 567-658 23-124 (247)
439 TIGR00630 uvra excinuclease AB 97.8 3.3E-05 7.1E-10 92.9 7.5 81 537-635 612-701 (924)
440 PRK07261 topology modulation p 97.8 1.7E-05 3.6E-10 77.3 4.0 64 567-632 1-69 (171)
441 cd03280 ABC_MutS2 MutS2 homolo 97.8 2.1E-05 4.6E-10 78.5 4.7 40 556-595 17-65 (200)
442 PRK00023 cmk cytidylate kinase 97.8 2.6E-05 5.7E-10 79.3 5.1 69 567-635 5-91 (225)
443 PRK05922 type III secretion sy 97.8 5.5E-05 1.2E-09 83.3 7.8 54 553-607 145-198 (434)
444 PF13555 AAA_29: P-loop contai 97.8 3.5E-05 7.6E-10 61.3 4.6 36 558-593 14-50 (62)
445 PRK09099 type III secretion sy 97.8 2.2E-05 4.8E-10 86.8 4.7 54 553-607 151-204 (441)
446 cd02026 PRK Phosphoribulokinas 97.8 2.7E-05 5.8E-10 81.5 5.1 55 568-624 1-55 (273)
447 PRK06793 fliI flagellum-specif 97.7 3.5E-05 7.5E-10 85.0 5.7 67 538-607 131-197 (432)
448 COG1245 Predicted ATPase, RNas 97.7 6.1E-05 1.3E-09 81.4 6.9 94 555-663 351-451 (591)
449 TIGR00101 ureG urease accessor 97.7 3.1E-05 6.7E-10 77.3 4.5 57 568-625 3-59 (199)
450 TIGR03498 FliI_clade3 flagella 97.7 1.9E-05 4.2E-10 86.9 3.2 54 554-608 129-182 (418)
451 PRK08472 fliI flagellum-specif 97.7 3.1E-05 6.7E-10 85.4 4.7 55 553-608 145-199 (434)
452 TIGR01026 fliI_yscN ATPase Fli 97.7 2.2E-05 4.7E-10 87.2 3.5 53 553-606 151-203 (440)
453 PRK00635 excinuclease ABC subu 97.7 5.6E-05 1.2E-09 95.4 7.4 40 537-584 600-639 (1809)
454 TIGR00554 panK_bact pantothena 97.7 4.7E-05 1E-09 80.1 5.5 45 568-612 64-110 (290)
455 cd03284 ABC_MutS1 MutS1 homolo 97.7 2.6E-05 5.7E-10 78.8 3.5 72 553-638 18-90 (216)
456 PLN03046 D-glycerate 3-kinase; 97.7 3.5E-05 7.7E-10 83.6 4.0 48 568-615 214-264 (460)
457 cd02025 PanK Pantothenate kina 97.6 9E-05 2E-09 75.2 6.6 25 568-592 1-25 (220)
458 cd01854 YjeQ_engC YjeQ/EngC. 97.6 5.2E-05 1.1E-09 80.1 5.0 79 556-636 152-239 (287)
459 cd03282 ABC_MSH4_euk MutS4 hom 97.6 6E-05 1.3E-09 75.5 4.5 37 552-588 15-51 (204)
460 PRK00349 uvrA excinuclease ABC 97.6 9E-05 2E-09 89.4 6.7 43 537-587 614-656 (943)
461 TIGR03496 FliI_clade1 flagella 97.6 5.1E-05 1.1E-09 83.6 4.2 66 539-607 113-178 (411)
462 PRK14530 adenylate kinase; Pro 97.6 7E-05 1.5E-09 75.6 4.4 72 566-654 3-77 (215)
463 PRK00098 GTPase RsgA; Reviewed 97.5 0.00016 3.4E-09 76.9 7.2 60 565-626 163-227 (298)
464 PTZ00035 Rad51 protein; Provis 97.5 0.00011 2.3E-09 79.3 5.9 82 562-652 114-202 (337)
465 PRK13851 type IV secretion sys 97.5 0.0002 4.3E-09 77.3 7.7 91 561-655 157-257 (344)
466 PRK00635 excinuclease ABC subu 97.5 8.8E-05 1.9E-09 93.7 5.4 57 538-601 936-992 (1809)
467 PRK14738 gmk guanylate kinase; 97.5 0.00011 2.3E-09 73.8 4.8 49 565-615 12-72 (206)
468 cd03287 ABC_MSH3_euk MutS3 hom 97.5 9.4E-05 2E-09 75.0 4.3 48 553-600 18-66 (222)
469 PRK11545 gntK gluconate kinase 97.5 5.1E-05 1.1E-09 73.2 2.3 60 572-637 1-62 (163)
470 PRK05541 adenylylsulfate kinas 97.5 6.5E-05 1.4E-09 73.3 2.7 43 563-605 4-47 (176)
471 cd04104 p47_IIGP_like p47 (47- 97.4 0.00015 3.2E-09 72.3 5.1 35 568-602 3-37 (197)
472 cd04155 Arl3 Arl3 subfamily. 97.4 0.00013 2.9E-09 70.3 4.6 40 566-605 14-61 (173)
473 cd00879 Sar1 Sar1 subfamily. 97.4 6.1E-05 1.3E-09 74.0 2.2 50 555-605 9-66 (190)
474 PF03193 DUF258: Protein of un 97.4 0.00013 2.8E-09 69.8 4.1 34 565-598 34-67 (161)
475 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00025 5.3E-09 72.4 6.5 78 563-652 16-103 (235)
476 PRK08972 fliI flagellum-specif 97.4 0.00014 3E-09 80.1 4.7 46 554-602 151-196 (444)
477 cd03243 ABC_MutS_homologs The 97.4 0.00016 3.4E-09 72.3 4.5 28 560-587 23-50 (202)
478 PRK10751 molybdopterin-guanine 97.4 0.00019 4.1E-09 69.7 4.8 40 567-606 7-51 (173)
479 PRK00889 adenylylsulfate kinas 97.4 0.00011 2.4E-09 71.6 3.2 40 564-603 2-42 (175)
480 TIGR00455 apsK adenylylsulfate 97.4 8.1E-05 1.8E-09 73.2 2.3 44 562-605 14-58 (184)
481 PRK06731 flhF flagellar biosyn 97.4 0.00012 2.7E-09 76.2 3.6 65 537-602 40-114 (270)
482 cd02023 UMPK Uridine monophosp 97.4 0.00014 3E-09 72.4 3.7 32 568-601 1-32 (198)
483 PRK06820 type III secretion sy 97.4 0.0002 4.3E-09 79.3 5.2 49 553-602 151-199 (440)
484 cd01393 recA_like RecA is a b 97.4 0.00019 4.2E-09 72.8 4.7 84 562-654 15-105 (226)
485 TIGR00368 Mg chelatase-related 97.3 0.00015 3.2E-09 82.0 3.9 56 553-608 198-253 (499)
486 PRK06936 type III secretion sy 97.3 0.00024 5.2E-09 78.4 5.0 41 553-594 150-190 (439)
487 PRK07429 phosphoribulokinase; 97.3 0.00028 6E-09 75.7 5.0 54 568-624 10-64 (327)
488 PRK14722 flhF flagellar biosyn 97.2 0.00021 4.5E-09 77.7 3.6 42 554-595 125-166 (374)
489 PLN02165 adenylate isopentenyl 97.2 0.00028 6E-09 75.1 4.4 45 564-608 41-89 (334)
490 TIGR00017 cmk cytidylate kinas 97.2 0.00032 7E-09 70.9 4.7 54 568-621 4-69 (217)
491 PRK14723 flhF flagellar biosyn 97.2 0.00021 4.6E-09 83.6 3.6 51 555-605 174-226 (767)
492 TIGR03819 heli_sec_ATPase heli 97.2 0.00079 1.7E-08 72.7 7.6 90 563-656 175-275 (340)
493 TIGR03015 pepcterm_ATPase puta 97.1 0.00017 3.6E-09 75.2 1.7 49 545-593 21-70 (269)
494 PRK13477 bifunctional pantoate 97.1 0.00039 8.4E-09 78.5 4.5 45 553-598 272-319 (512)
495 PRK09183 transposase/IS protei 97.1 0.00022 4.9E-09 74.1 2.4 61 538-599 72-135 (259)
496 PRK14737 gmk guanylate kinase; 97.1 0.00047 1E-08 68.0 4.4 50 565-616 3-64 (186)
497 TIGR02239 recomb_RAD51 DNA rep 97.1 0.00024 5.3E-09 75.9 2.5 89 556-653 85-181 (316)
498 cd03276 ABC_SMC6_euk Eukaryoti 97.1 0.00042 9.2E-09 69.1 4.0 67 557-627 13-82 (198)
499 cd03285 ABC_MSH2_euk MutS2 hom 97.1 0.00054 1.2E-08 69.6 4.7 35 553-587 17-51 (222)
500 PRK09087 hypothetical protein; 97.1 0.00036 7.7E-09 71.1 3.3 64 565-628 43-124 (226)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-81 Score=688.00 Aligned_cols=465 Identities=30% Similarity=0.450 Sum_probs=423.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 161 ITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIG-ARP-EPLWKLLSKVGLLYALEPIFTVIFVMNM 238 (691)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~-~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (691)
..+++++.+.+++++++..+.+++++..+..++.|.++++++|.+.. .+. ..+......+.+++++.+++..++..++
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999875 222 2344555666777788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 005561 239 NTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQL 318 (691)
Q Consensus 239 ~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L 318 (691)
...++++..++|.++|+++++++++|||++++||++||+++|+..+.+.+...+. .++++.+..++.+++|+++||+|
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls--~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLS--DGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999998886 47899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 319 APILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTF 398 (691)
Q Consensus 319 ~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~ 398 (691)
+++.++.++++.++..+|.+..++..++.+++.++.++...|.+++++|||+|+.|+.+.+||.+..++..+...|....
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888889999888888999999999999999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005561 399 KSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEI 478 (691)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~ 478 (691)
..+......+..++..+.++++|++++..|+||.|.+++|+.|...+..++.+++..++++.++..|.+|+++++|.+|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 77777777788888899999999999999999999999999999999999999999999999999999999999987541
Q ss_pred chhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccc
Q 005561 479 DDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNG 558 (691)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~ 558 (691)
-+. . | ...+....|.|+|+||+|+||.|++.+||+|
T Consensus 451 i~~--------------~----------G--------------------~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~ 486 (716)
T KOG0058|consen 451 IPL--------------T----------G--------------------TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKN 486 (716)
T ss_pred CCC--------------C----------C--------------------ccccccccceEEEEEeeeecCCCCCchhhcC
Confidence 100 0 0 0011135799999999999999999999999
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCC
Q 005561 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638 (691)
Q Consensus 559 IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~ 638 (691)
+||+|+|||+||+||||||||||+++||.|||+|++|+|++||+||++++..+||++||+|.|||.||++||+|||.||.
T Consensus 487 lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~ 566 (716)
T KOG0058|consen 487 LSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGL 566 (716)
T ss_pred ceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 639 PDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 639 p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
+ ++++|||.+||++|++||||.++|+||||.+.
T Consensus 567 ~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG 599 (716)
T KOG0058|consen 567 D--NATDEEIEAAAKMANAHEFITNFPDGYNTVVG 599 (716)
T ss_pred C--CCCHHHHHHHHHHhChHHHHHhCccccccccC
Confidence 6 58999999999999999999999999999874
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2e-73 Score=653.86 Aligned_cols=501 Identities=23% Similarity=0.311 Sum_probs=428.9
Q ss_pred cceeeecCCCCCCCcCCCCCCCCCCCC-------CC-CCCCCCCCchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005561 123 ITCAYVSGPASDPIVSEPDPRINDSVS-------PS-EKVHSPPNLITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSM 194 (691)
Q Consensus 123 ~~~~~~~~pa~~~~~~~p~~~~~~~~~-------~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~ 194 (691)
..++++.||+.|+++..+ .+|++.-+ +. ++......+..+.+++..++++++.+..+++.+++..+++++.
T Consensus 95 ~~~~~v~dp~~g~~~l~~-~e~~~~~tg~~l~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~ 173 (709)
T COG2274 95 KNKVVVLDPAKGIRRLSL-EEFEKLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALAT 173 (709)
T ss_pred CCeEEEEeCCCCcEEcCH-HHHHHhhheeEEEEecccccccccccccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999888876522 22222110 11 1111113333456688999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcccChhHH
Q 005561 195 PIFSGRFFEVLIG-ARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGEL 273 (691)
Q Consensus 195 P~~~~~iiD~l~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l 273 (691)
|++.+.++|.++. .+.+.++.+...++++.++..++..++.+.+.+++.|+..++..++|+|++++|+.||+++++||+
T Consensus 174 p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~ 253 (709)
T COG2274 174 PLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEI 253 (709)
T ss_pred HHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhH
Confidence 9999999998864 445567777777777778888888999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 005561 274 SGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQAS 353 (691)
Q Consensus 274 ~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (691)
++|+ +|.++|+++++..+.. .+..+..+++++++|++++|+|+++.++.+++.+++..++.+..++..++.-+..++
T Consensus 254 ~sR~-~el~~Ir~flt~~~l~--~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~ 330 (709)
T COG2274 254 ISRV-RELEQIREFLTGSILT--LIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAE 330 (709)
T ss_pred HHHH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 7899999999877653 455566678888899999999999877766666666555555555566666666777
Q ss_pred HHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHH
Q 005561 354 IADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVG 433 (691)
Q Consensus 354 ~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG 433 (691)
.++.+.|+++|++|||+.+.|+++..+|++...++.+.+.+..........+..++..+..++++|+|+++|++|++|+|
T Consensus 331 ~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG 410 (709)
T COG2274 331 QQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLG 410 (709)
T ss_pred HhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchH
Confidence 77899999999999999999999999999999999999999999988888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchhhhcccchhhhhhhhhcCCCCCccc
Q 005561 434 IVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQ 513 (691)
Q Consensus 434 ~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (691)
.+++|..+...+..|+.++++.+.+++....+.+|+.++++.+++++. +.
T Consensus 411 ~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---------------~~--------------- 460 (709)
T COG2274 411 QLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---------------DK--------------- 460 (709)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---------------cc---------------
Confidence 999999999999999999999999999999999999999987642210 00
Q ss_pred ccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC
Q 005561 514 HLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT 593 (691)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~ 593 (691)
.....+...|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|+|+|+|+
T Consensus 461 -------------~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~ 526 (709)
T COG2274 461 -------------TLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526 (709)
T ss_pred -------------ccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 000112357999999999999843 457999999999999999999999999999999999999999
Q ss_pred CCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 594 GGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 594 ~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
+|+|++||.|+.+++.+++|++|+||+||++||+|||+|||++|+|+ +++||+++||+.|++||||++||+||||++.
T Consensus 527 ~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~--~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 527 QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPE--ATDEEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred CceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCC--CCHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999885 7899999999999999999999999999983
No 3
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=2.3e-67 Score=619.33 Aligned_cols=492 Identities=20% Similarity=0.270 Sum_probs=408.6
Q ss_pred cceeeecCC--CCCCCcC----------------CCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhHHHHHHHHHHH
Q 005561 123 ITCAYVSGP--ASDPIVS----------------EPDPRINDSVSPSEKVHSPPNLITWGLLWSLFLKHKLRLGLSVLTL 184 (691)
Q Consensus 123 ~~~~~~~~p--a~~~~~~----------------~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~ 184 (691)
.+++++.|| +.|++.. +|+++|++.. ++...+++++.+++++++.+...++++
T Consensus 95 ~~~~~i~dP~~~~g~~~~~~~ef~~~~~g~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (708)
T TIGR01193 95 KNHLIIADPDPTVGITKISKEDFYEEWTGIAIFISPTPEYKPIK---------EKENSLLKFIPLITRQKKLIVNIVIAA 165 (708)
T ss_pred CCEEEEEcCCcccCCEEecHHHHHhhCCCEEEEEEecccccccc---------cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999 8888654 5666665332 122346678888999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 005561 185 IGCTTCTLSMPIFSGRFFEVLIGARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAE 263 (691)
Q Consensus 185 l~~~~~~l~~P~~~~~iiD~l~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~ 263 (691)
++..++.++.|++++.++|.+..+.. ..++.+...+++++++..++.++..+...+...++..++|.++|+|++++|+.
T Consensus 166 ~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~ 245 (708)
T TIGR01193 166 IIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMS 245 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998865432 23343333444445555666677777778888999999999999999999999
Q ss_pred hhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 005561 264 FFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPV 343 (691)
Q Consensus 264 ~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~~~~~~~~~~~~~~~ 343 (691)
+|+++++|++++|++ |++.+++.+...+.. .+..+..++++++++++++|++++++++.+++..++..++.++.++.
T Consensus 246 ~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 322 (708)
T TIGR01193 246 FFSTRRTGEIVSRFT-DASSIIDALASTILS--LFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKL 322 (708)
T ss_pred HhCCCchhHHHHHhh-hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 899999888765542 34455556667778899999999886666665555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 344 FKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGS 423 (691)
Q Consensus 344 ~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~~G~~ 423 (691)
.++..+..++..+.+.|+++|+++||++|.|+++.++|++...++.+...+..........+..++..+..++++++|++
T Consensus 323 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~ 402 (708)
T TIGR01193 323 NHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAY 402 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778888899999999999999999999999999999999988888887777766666667777778888999999
Q ss_pred HHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchhhhcccchhhhhhhh
Q 005561 424 KVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLF 503 (691)
Q Consensus 424 lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (691)
++.+|.+|+|+++++..+...+..|+.++.+.+.+++.+..+.+|+.++++.+++.+ .. ..
T Consensus 403 lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~-----------~~--~~------ 463 (708)
T TIGR01193 403 LVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI-----------NK--KK------ 463 (708)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc-----------cc--cc------
Confidence 999999999999999999999999999999999999999999999999987543110 00 00
Q ss_pred hcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHH
Q 005561 504 LFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIV 583 (691)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl 583 (691)
........|+|+|+||+|+|++ ++++|+|+||+|++||++||||+||||||||+
T Consensus 464 ------------------------~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLl 517 (708)
T TIGR01193 464 ------------------------RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLA 517 (708)
T ss_pred ------------------------ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHH
Confidence 0000113568999999999973 45799999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCC-CCCCCCHHHHHHHHHHcCcHHHHh
Q 005561 584 QLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL-PDENVSKDDIIKAAKAANAHDFII 662 (691)
Q Consensus 584 ~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~-p~~~~sdeeI~~Al~~A~l~dfI~ 662 (691)
++|+|+|+|++|+|++||+|+++++.+++|++|+||+||++||+|||||||++|+ | ++++|++++||+.|+++|||+
T Consensus 518 klL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~--~~~~~~i~~a~~~a~l~~~i~ 595 (708)
T TIGR01193 518 KLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE--NVSQDEIWAACEIAEIKDDIE 595 (708)
T ss_pred HHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCC--CCCHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999994 4 479999999999999999999
Q ss_pred cCCcccccchh
Q 005561 663 SLPQVWLSKSH 673 (691)
Q Consensus 663 ~LP~GydT~~~ 673 (691)
+||+||||.+.
T Consensus 596 ~lp~gldt~i~ 606 (708)
T TIGR01193 596 NMPLGYQTELS 606 (708)
T ss_pred hcccccCcEec
Confidence 99999999874
No 4
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=5.2e-67 Score=616.80 Aligned_cols=499 Identities=21% Similarity=0.287 Sum_probs=411.4
Q ss_pred cceeeecCCCCCCCcC----------------CCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhHHHHHHHHHHHHH
Q 005561 123 ITCAYVSGPASDPIVS----------------EPDPRINDSVSPSEKVHSPPNLITWGLLWSLFLKHKLRLGLSVLTLIG 186 (691)
Q Consensus 123 ~~~~~~~~pa~~~~~~----------------~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 186 (691)
.+++++.||+.|++.. +|+++|++.. ++...+++++.+++++++.+...++++++
T Consensus 95 ~~~~~i~dP~~g~~~~~~~e~~~~~~g~~l~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 165 (710)
T TIGR03796 95 GGRVYLNDPALGPRTVSLEEFDESFTGVVLTFEPGPEFQKGG---------RKPSLLRALWRRLRGSRGALLYLLLAGLL 165 (710)
T ss_pred CCEEEEECCCCCCEEccHHHHHhhCCCeEEEEEECccccccC---------cCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999998764 5655555432 22245778888999999988888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhh
Q 005561 187 CTTCTLSMPIFSGRFFEVLIGARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFF 265 (691)
Q Consensus 187 ~~~~~l~~P~~~~~iiD~l~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~~f 265 (691)
..++.++.|++++.++|.++.... ..++.+...++++.++..++.++..+.......++..++|.++|+|++++|+++|
T Consensus 166 ~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~ 245 (710)
T TIGR03796 166 LVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFF 245 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998864332 2333333444444555566666777777788899999999999999999999999
Q ss_pred cccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 005561 266 DRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFK 345 (691)
Q Consensus 266 ~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~~~~~~~~~~~~~~~~~ 345 (691)
+++++|++++|+++| +.+++++...+.. .+..+..++++++++++++|++++++++.+++..++..++.++..+..+
T Consensus 246 ~~~~~g~~~~r~~~~-~~i~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~ 322 (710)
T TIGR03796 246 AQRHAGDIASRVQLN-DQVAEFLSGQLAT--TALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANR 322 (710)
T ss_pred cCCcccHHHHHhhhH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888 6788888765542 4556666777888899999999988666555555555555555555566
Q ss_pred HHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 346 AHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKV 425 (691)
Q Consensus 346 ~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv 425 (691)
+..+..++..+.+.|.++|+++||++|.|+.+.++|.+...+..+...+..+.......+..++..+..++++++|++++
T Consensus 323 ~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v 402 (710)
T TIGR03796 323 RLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRV 402 (710)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888999999999999999999999999999999988888888877777777777777788888999999999
Q ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchhhhcccchhhhhhhhhc
Q 005561 426 KAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLF 505 (691)
Q Consensus 426 ~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (691)
.+|.+|+|.++++..+...+..|+..+.+.+.+++.+..+++|+.++++.+++.+. ...+...
T Consensus 403 ~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~---------~~~~~~~-------- 465 (710)
T TIGR03796 403 MEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL---------EEEEAPA-------- 465 (710)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc---------ccccccc--------
Confidence 99999999999999999999999999999999999999999999999976431100 0000000
Q ss_pred CCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHH
Q 005561 506 DGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQL 585 (691)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~L 585 (691)
..........|.|+|+||+|+|++ .++++|+|+||+|++||++||||+||||||||+++
T Consensus 466 --------------------~~~~~~~~~~~~I~~~~vsf~y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlkl 524 (710)
T TIGR03796 466 --------------------AGSEPSPRLSGYVELRNITFGYSP-LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKL 524 (710)
T ss_pred --------------------cccccCCCCCCeEEEEEEEEecCC-CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 000000113578999999999984 34679999999999999999999999999999999
Q ss_pred HHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 586 LARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 586 L~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
|+|+|+|++|+|++||+|+++++.+++|++|+||+||++||+|||||||++++|+ +++|++++||+.++++|+|++||
T Consensus 525 L~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~--~~~~~i~~al~~~~l~~~i~~lp 602 (710)
T TIGR03796 525 VAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPT--IPDADLVRACKDAAIHDVITSRP 602 (710)
T ss_pred HhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCC--CCHHHHHHHHHHhCCHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999764 79999999999999999999999
Q ss_pred cccccchh
Q 005561 666 QVWLSKSH 673 (691)
Q Consensus 666 ~GydT~~~ 673 (691)
+||||.+.
T Consensus 603 ~gl~t~i~ 610 (710)
T TIGR03796 603 GGYDAELA 610 (710)
T ss_pred Ccccceec
Confidence 99999863
No 5
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.9e-66 Score=607.89 Aligned_cols=499 Identities=20% Similarity=0.201 Sum_probs=404.3
Q ss_pred CcceeeecCCCCCCCcCCCCCCCCCCCC---CCCCCCCCCCchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 122 TITCAYVSGPASDPIVSEPDPRINDSVS---PSEKVHSPPNLITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFS 198 (691)
Q Consensus 122 ~~~~~~~~~pa~~~~~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~ 198 (691)
+.+++++.||+.|++..-+-.+|++... .-.+.-..++...+++++..++++++.+...++++++..++.++.|+++
T Consensus 80 ~~~~~~i~dP~~g~~~~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~ 159 (686)
T TIGR03797 80 SRGGYEIFDPATGTRRRVDAAMAATLAPEAYMFYRPLPDKALGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIAT 159 (686)
T ss_pred cCCEEEEECCCCCCCcccCHHHHHhcCCEEEEEecCCccccccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999874433333332210 0000000111223334444478888888888899999999999999999
Q ss_pred HHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHH
Q 005561 199 GRFFEVLIGAR-PEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLL 277 (691)
Q Consensus 199 ~~iiD~l~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srl 277 (691)
+.++|.++... ...++.+...+++++++..++.++..+...+++.++..++|.++|+|++++|+.||+++++|++++|+
T Consensus 160 ~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~ 239 (686)
T TIGR03797 160 GILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRA 239 (686)
T ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHH
Confidence 99999887432 33344444444555555666677777777888899999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 005561 278 TSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADC 357 (691)
Q Consensus 278 t~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (691)
+ |++.+++.+...+.. .+..+..++++++++++++|+++++.++++++..++..++.+..++..++..+..++..+.
T Consensus 240 ~-~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (686)
T TIGR03797 240 M-GISQIRRILSGSTLT--TLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGL 316 (686)
T ss_pred h-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 799999988765542 3444455567778899999999987655555544444455555555666666777788889
Q ss_pred HHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Q 005561 358 VTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVAS 437 (691)
Q Consensus 358 ~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva 437 (691)
+.|.++|+++||+++.|+++.++|++..++..+...+..+.......+..++..+..++++++|++++.+|.+|+|.+++
T Consensus 317 ~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva 396 (686)
T TIGR03797 317 TVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLA 396 (686)
T ss_pred HHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999888888777777777777788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccccch
Q 005561 438 FIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNM 517 (691)
Q Consensus 438 ~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (691)
+..+...+..|+..+.+.+.+++.+..+++|+.++++.+++.+ .+
T Consensus 397 ~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~---------------~~-------------------- 441 (686)
T TIGR03797 397 FNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD---------------EA-------------------- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc---------------cC--------------------
Confidence 9999999999999999999999999999999999987542100 00
Q ss_pred hhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeE
Q 005561 518 HYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597 (691)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I 597 (691)
...+....|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|
T Consensus 442 ----------~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I 510 (686)
T TIGR03797 442 ----------KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510 (686)
T ss_pred ----------cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 00001124689999999999742 4679999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 598 TVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 598 ~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
++||+|+++++.+++|++|+||+||++||+|||||||++|+| +++||+++||+.|+++|+|++||+||||.+
T Consensus 511 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~i 582 (686)
T TIGR03797 511 FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVI 582 (686)
T ss_pred EECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccc
Confidence 999999999999999999999999999999999999999975 689999999999999999999999999976
No 6
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2e-66 Score=609.99 Aligned_cols=491 Identities=20% Similarity=0.291 Sum_probs=406.0
Q ss_pred eeecCCCCC--CCcC----------------CCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005561 126 AYVSGPASD--PIVS----------------EPDPRINDSVSPSEKVHSPPNLITWGLLWSLFLKHKLRLGLSVLTLIGC 187 (691)
Q Consensus 126 ~~~~~pa~~--~~~~----------------~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 187 (691)
+++.||+.| ++.. +|+++|++... ..++...+++++.+++++++.+...++++++.
T Consensus 86 ~~i~DP~~g~~~~~~~~~e~~~~~~g~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (694)
T TIGR03375 86 ARVLLPETGDGEQELSLDALEALYSGYAIFVRPQFRFDARAD------ELISPRPKHWFWSTLKESWPLYRDVLIASLLI 159 (694)
T ss_pred EEEEccCCCCCceEecHHHHHhhcCCeEEEEecccccccccc------cccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 6543 45555543220 00112345668888899999999989999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhc
Q 005561 188 TTCTLSMPIFSGRFFEVLIGAR-PEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFD 266 (691)
Q Consensus 188 ~~~~l~~P~~~~~iiD~l~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~~f~ 266 (691)
.++.++.|++++.++|.+.... ...++.+...+++++++..++.++..+...+...++..++|.++|+|++++|+.+ +
T Consensus 160 ~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~ 238 (694)
T TIGR03375 160 NLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-R 238 (694)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-C
Confidence 9999999999999999876433 2233333333344444555666777777788889999999999999999999998 7
Q ss_pred ccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 005561 267 RYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKA 346 (691)
Q Consensus 267 ~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~~~~~~~~~~~~~~~~~~ 346 (691)
++++|++++|+ +|++.+++++...+.. .+..+..++++++++++++|++++++++.+++..++..++.++.++..++
T Consensus 239 ~~~~G~~~~r~-~d~~~i~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 315 (694)
T TIGR03375 239 PASVGSFANQL-REFESVRDFFTSATLT--ALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEE 315 (694)
T ss_pred CCChhHHHHHH-HHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999 7999999988765442 34455556667778899999999876665555555555566666666677
Q ss_pred HHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005561 347 HGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVK 426 (691)
Q Consensus 347 ~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~ 426 (691)
..+..++..+.+.|+++|+++||+++.|+.+.++|++..++..+...+..+.......+..++..+..++++++|++++.
T Consensus 316 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~ 395 (694)
T TIGR03375 316 SMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLIS 395 (694)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888899999999999999999999999999999999999998888888777777777777888888999999999
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchhhhcccchhhhhhhhhcC
Q 005561 427 AGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFD 506 (691)
Q Consensus 427 ~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (691)
+|.+|+|+++++..+...+..|+..+.+.+.+++.+..+++|+.++++.+++.+ ... .
T Consensus 396 ~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~-----------~~~--~--------- 453 (694)
T TIGR03375 396 DGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP-----------EGT--R--------- 453 (694)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-----------CCC--C---------
Confidence 999999999999999999999999999999999999999999999997643110 000 0
Q ss_pred CCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHH
Q 005561 507 GSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLL 586 (691)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL 586 (691)
........+.|+|+||+|+|++ .++++|+|+||+|+|||++||||+||||||||+++|
T Consensus 454 ---------------------~~~~~~~~~~I~~~~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL 511 (694)
T TIGR03375 454 ---------------------FLHRPRLQGEIEFRNVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLL 511 (694)
T ss_pred ---------------------CCCCCCccceEEEEEEEEEeCC-CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 0000112468999999999974 245799999999999999999999999999999999
Q ss_pred HhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 587 ARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 587 ~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
+|+|+|++|+|++||+|+++++.+++|++|+||+||+++|+|||+|||++++|+ +++||+++||+.++++|+|++||+
T Consensus 512 ~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~--~~~~~i~~a~~~~~l~~~i~~lp~ 589 (694)
T TIGR03375 512 LGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY--ADDEEILRAAELAGVTEFVRRHPD 589 (694)
T ss_pred hcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCC--CCHHHHHHHHHHcChHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999999774 799999999999999999999999
Q ss_pred ccccch
Q 005561 667 VWLSKS 672 (691)
Q Consensus 667 GydT~~ 672 (691)
||||.+
T Consensus 590 gl~T~i 595 (694)
T TIGR03375 590 GLDMQI 595 (694)
T ss_pred ccccee
Confidence 999986
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9e-67 Score=606.41 Aligned_cols=466 Identities=26% Similarity=0.329 Sum_probs=386.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 005561 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLW----KLLSKVGLLYALEPIFTVIFVMN 237 (691)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~----~~l~~~~~~~~~~~~~~~~~~~~ 237 (691)
.+.++.++.+++++.++++.+++++..+...+..++++.++..+...+.+... .+..+.+++.+...+..++..+.
T Consensus 651 s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~ 730 (1228)
T KOG0055|consen 651 SFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYF 730 (1228)
T ss_pred cHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777776666655555556667777776533332221 12222233333444556667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhcc-cChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhH
Q 005561 238 MNTVWEKVMSIVKAQIFRRVLIQKAEFFDR-YKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAP 316 (691)
Q Consensus 238 ~~~~~~~~~~~LR~~lf~~ll~lp~~~f~~-~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~ 316 (691)
+...++++..++|..+|+++++++..|||+ .++|.|.+|+.+|...++..+.+.+. .++.++..++..+++.|+++|
T Consensus 731 f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~--~vv~~~~~~~~~iiiaf~~~W 808 (1228)
T KOG0055|consen 731 FGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLS--LVVQNIAAVIIGIIIAFIYGW 808 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999996 23399999999999999999998887 367788888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 005561 317 QLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLG 396 (691)
Q Consensus 317 ~L~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~ 396 (691)
+++++++...+++.+......+......++..++.++.++.+.|+++|||||++|+.|+++.+.|.+..++..+...+.+
T Consensus 809 ~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~ 888 (1228)
T KOG0055|consen 809 RLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG 888 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998777776666665555554444445555666777789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005561 397 TFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTT 476 (691)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~ 476 (691)
.+.++...+.+...++..++.+|+|++++.+|.++..+++-.+.....-...+.+......++.++..|+.+++++++.+
T Consensus 889 ~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~ 968 (1228)
T KOG0055|consen 889 LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRK 968 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999987666555555667777888899999999999999999876
Q ss_pred ccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccc
Q 005561 477 EIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVIL 556 (691)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL 556 (691)
+.-+ ... +. ....+...|+|+|+||+|+||+||+.+||
T Consensus 969 ~~i~-----------~~~-~~------------------------------~~~~~~~~G~I~~~~V~F~YPsRP~~~Il 1006 (1228)
T KOG0055|consen 969 PTID-----------PDS-TS------------------------------GGKLPNVKGDIEFRNVSFAYPTRPDVPVL 1006 (1228)
T ss_pred CCCC-----------CCC-CC------------------------------CCccccceeEEEEeeeEeeCCCCCCchhh
Confidence 4110 000 00 01112367999999999999999999999
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhc
Q 005561 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAY 636 (691)
Q Consensus 557 ~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~l 636 (691)
+|+||+|++||++||||||||||||++.||.|||||++|.|.|||+|++++++++||++||+|+|||.||++||||||+|
T Consensus 1007 ~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~Y 1086 (1228)
T KOG0055|consen 1007 NNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAY 1086 (1228)
T ss_pred cCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 637 GLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 637 G~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
|.. +++++||++|||.|++|+||.+||+||||.+-
T Consensus 1087 G~~--~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1087 GSE--EVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred cCC--CCCHHHHHHHHHHhhhHHHHhcCcCcccCccC
Confidence 943 38999999999999999999999999999874
No 8
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=5.7e-66 Score=588.82 Aligned_cols=460 Identities=19% Similarity=0.235 Sum_probs=375.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 165 LLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKL--LSKVGLLYALEPIFTVIFVMNMNTVW 242 (691)
Q Consensus 165 ~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (691)
+++++++++++.++..+++.++..++.++.|++++.++|.+..... ..... +..++++.++..++.++..+...+..
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (529)
T TIGR02868 3 RILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAA 81 (529)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888899999999999999998754322 11111 11111223334445555556666777
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005561 243 EKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIL 322 (691)
Q Consensus 243 ~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil 322 (691)
.++..++|.++|+|++++|..+|+++++|++++|+++|++.+++.+...+.. .+..+..+++.++++++++|.+++++
T Consensus 82 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~l~~ 159 (529)
T TIGR02868 82 LRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVP--LVVALVVGSAAVAAIALLSVPAALVL 159 (529)
T ss_pred HHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8899999999999999999999999999999999999999999988766542 45566667778888999999998876
Q ss_pred HHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 323 GVLVLTVSVLVAV-YKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSL 401 (691)
Q Consensus 323 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~ 401 (691)
++.++++.++... ..+..+...++..+..+++.+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+..+.
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02868 160 AAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGL 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444333323 333333344555667788889999999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh
Q 005561 402 NESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDA 481 (691)
Q Consensus 402 ~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~ 481 (691)
...+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+.+.+..++++.++.+|+.++++.++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~- 318 (529)
T TIGR02868 240 GAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRP- 318 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC-
Confidence 7777777777778888899999999999999999999999999999999999999999999999999999987543110
Q ss_pred hhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeE
Q 005561 482 LANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNL 561 (691)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL 561 (691)
...... +.......++|+|+||+|+|++ ++++|+|+||
T Consensus 319 ----------~~~~~~------------------------------~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl 356 (529)
T TIGR02868 319 ----------EGVVPA------------------------------AGALGLGKPTLELRDLSFGYPG--SPPVLDGVSL 356 (529)
T ss_pred ----------CCCCCC------------------------------CcccCCCCceEEEEEEEEecCC--CCceeecceE
Confidence 000000 0000012357999999999974 2469999999
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCC
Q 005561 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE 641 (691)
Q Consensus 562 ~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~ 641 (691)
+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++++ .+++|++|+||+|||+||+|||||||++|+|+
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~- 434 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPD- 434 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCC-
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999764
Q ss_pred CCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 642 NVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 642 ~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
++|||+++||+.|+++|||++||+||||.+.
T Consensus 435 -~~~e~i~~al~~a~l~~~i~~lp~GldT~ig 465 (529)
T TIGR02868 435 -ATDEELWAALERVGLADWLRSLPDGLDTVLG 465 (529)
T ss_pred -CCHHHHHHHHHHcCCHHHHHhCcccccchhc
Confidence 7999999999999999999999999999863
No 9
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5.4e-65 Score=597.63 Aligned_cols=464 Identities=30% Similarity=0.394 Sum_probs=391.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMNT 240 (691)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (691)
.+++++++++++++.+...+++.++..++.++.|++++.++|.+..... ..+...+..+++++++..++.++.......
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 227 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNY 227 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888889998888888888999999999999999999998864322 333333333444444455555666666677
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005561 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (691)
Q Consensus 241 ~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~l 320 (691)
...++..++|.++|++++++|..+|+++++|++++|+++|++.+++.+...+. ..+..+..+++.+++++.++|++++
T Consensus 228 ~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~--~~l~~~~~~i~~~~~l~~~s~~l~l 305 (711)
T TIGR00958 228 TMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVN--VLLRNLVMLLGLLGFMLWLSPRLTM 305 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88899999999999999999999999999999999999999999998887664 3566677778888899999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (691)
Q Consensus 321 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~ 400 (691)
++++.+++..++..++.++.++..++..+..++..+.+.|.++|+++||+|+.|+++.++|.+..++..+...+......
T Consensus 306 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (711)
T TIGR00958 306 VTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYA 385 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665555555555666666666666777778888999999999999999999999999999999998888777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Q 005561 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (691)
Q Consensus 401 ~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~ 480 (691)
....+..+...+..++++++|++++.+|.+|+|++++++.|...+..|+..+...+.+++++.++.+|+.++++.++..+
T Consensus 386 ~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 465 (711)
T TIGR00958 386 GYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIP 465 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 55555556666677778889999999999999999999999999999999999999999999999999999987542110
Q ss_pred hhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCccccccee
Q 005561 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLN 560 (691)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Is 560 (691)
+ .. ...+.+..+.|+|+||+|+||+++++++|+|+|
T Consensus 466 -------------~-~~------------------------------~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~is 501 (711)
T TIGR00958 466 -------------L-TG------------------------------TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLT 501 (711)
T ss_pred -------------C-CC------------------------------CCCCCCCCCeEEEEEEEEECCCCCCCccccCce
Confidence 0 00 000011346899999999998654568999999
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCC
Q 005561 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640 (691)
Q Consensus 561 L~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~ 640 (691)
|+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|||++|+|||||||+||+|+
T Consensus 502 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~ 581 (711)
T TIGR00958 502 FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD 581 (711)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 641 ENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 641 ~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
++||++++||+.|+++|||+++|+||||.+.
T Consensus 582 --~~~e~i~~al~~a~l~~~i~~lp~GldT~ig 612 (711)
T TIGR00958 582 --TPDEEIMAAAKAANAHDFIMEFPNGYDTEVG 612 (711)
T ss_pred --CCHHHHHHHHHHcCCHHHHHhCCCccCCccc
Confidence 6899999999999999999999999999864
No 10
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.9e-64 Score=593.10 Aligned_cols=500 Identities=21% Similarity=0.288 Sum_probs=404.4
Q ss_pred cceeeecCCCCCCCcCCCCCCCCCC--C-----CCCCCCCCCCCchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005561 123 ITCAYVSGPASDPIVSEPDPRINDS--V-----SPSEKVHSPPNLITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMP 195 (691)
Q Consensus 123 ~~~~~~~~pa~~~~~~~p~~~~~~~--~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P 195 (691)
.+++++.||+.|.++.-+-.+|++. + .+.. ...+++...+++++.+++++++.+...++++++..++.++.|
T Consensus 81 ~~~~~i~Dp~~g~~~~i~~~e~~~~~~g~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p 159 (694)
T TIGR01846 81 ANGVTIYDPPGDAPEVLSREVLEALWSGTVILLATRS-VAGKALKFGFSWFIPAIIRYRKQFREVLLISLALQLFALVTP 159 (694)
T ss_pred CCEEEEEcCCCCCceeeCHHHHHhhCCCeEEEEecCc-cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999983322122222211 0 0001 000112234677888888999999888999999999999999
Q ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHH
Q 005561 196 IFSGRFFEVLIGA-RPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELS 274 (691)
Q Consensus 196 ~~~~~iiD~l~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~ 274 (691)
++++.++|.++.. +...++.+...++++.++..++.++..+.......++..++|.++|+|++++|+.+|+++++|+++
T Consensus 160 ~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~ 239 (694)
T TIGR01846 160 LLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTV 239 (694)
T ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHH
Confidence 9999999988643 223344433344444455566677777777888899999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 005561 275 GLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASI 354 (691)
Q Consensus 275 srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (691)
+|+ +|++.+++++...+.. .+..+..++++++++++++|++++++++.+++..++..++.+..++..++..+..++.
T Consensus 240 ~rl-~d~~~i~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 316 (694)
T TIGR01846 240 ARV-RELEQIRNFLTGSALT--VVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAA 316 (694)
T ss_pred HHh-hhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 6999999988765542 3334445556677889999999987665555555554455554455555666677788
Q ss_pred HHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHH
Q 005561 355 ADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGI 434 (691)
Q Consensus 355 ~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~ 434 (691)
++.+.|+++|+++||++|.|+.+.++|++..+++.+...+..+.......+..++..+..++++++|++++.+|.+|+|+
T Consensus 317 ~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~ 396 (694)
T TIGR01846 317 TSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQ 396 (694)
T ss_pred HHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHH
Confidence 88999999999999999999999999999999999999888888777777777777788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccc
Q 005561 435 VASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQH 514 (691)
Q Consensus 435 lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (691)
++++..+...+..|+..+.+.+.+++.+..+++|+.++++.+++.+ .. .
T Consensus 397 lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~------------~~--~----------------- 445 (694)
T TIGR01846 397 LVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR------------SA--G----------------- 445 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc------------CC--C-----------------
Confidence 9999999999999999999999999999999999999987542100 00 0
Q ss_pred cchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCC
Q 005561 515 LNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594 (691)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~ 594 (691)
........+.|+|+||+|+|+++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++
T Consensus 446 -------------~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~ 511 (694)
T TIGR01846 446 -------------LAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511 (694)
T ss_pred -------------CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 00001134689999999999742 4579999999999999999999999999999999999999999
Q ss_pred CeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 595 GRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 595 G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
|+|++||+|+++++.+++|++|+||+||+++|+|||+|||++++|+ ++++++++||+.++++|+|++||+||||.+.
T Consensus 512 G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~--~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~ 588 (694)
T TIGR01846 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG--APFEHVIHAAKLAGAHDFISELPQGYNTEVG 588 (694)
T ss_pred ceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCC--CCHHHHHHHHHHcChHHHHHhCcCccCcEec
Confidence 9999999999999999999999999999999999999999999764 7999999999999999999999999999864
No 11
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.1e-64 Score=585.27 Aligned_cols=459 Identities=19% Similarity=0.206 Sum_probs=371.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 163 WGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGA--RPEPLWKLLSKVGLLYALEPIFTVIFVMNMNT 240 (691)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (691)
+++++++++++++.+++.+++.++..++.+..|++++.++|.+... +...++.....+++++++..++.++..+....
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFK 89 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999987522 22223333333444445555666666677778
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005561 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (691)
Q Consensus 241 ~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~l 320 (691)
...++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++.+...+.. .+..++.+++.++++++++|++++
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~l 167 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQ--MALAVLVPLLILIAVFPINWAAGL 167 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999999998776653 455666677778889999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (691)
Q Consensus 321 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~ 400 (691)
++++.+++..++..++.++.++..++..+..+++++.+.|.++|+++||+|++|+.+.++|++..+++.+...+..+...
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK11174 168 ILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAF 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665555555555566655566666677788888999999999999999999999999999999998888877766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIV---------ASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINS 471 (691)
Q Consensus 401 ~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~l---------va~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~ 471 (691)
....+..+...+..+++++++++.+. |.+|+|++ ++++.+...+..|+..+...+.+++++.++.+|+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 248 LSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555445455555443 77888764 233356677889999999999999999999999999
Q ss_pred HhcccccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCC
Q 005561 472 ILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRP 551 (691)
Q Consensus 472 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~ 551 (691)
+++.++.++ . .. . .+. +....++|+|+||+|.|++
T Consensus 327 ~l~~~~~~~------------~--~~----------~------------------~~~-~~~~~~~i~~~~vsf~~~~-- 361 (588)
T PRK11174 327 FLETPLAHP------------Q--QG----------E------------------KEL-ASNDPVTIEAEDLEILSPD-- 361 (588)
T ss_pred HHcCCCccc------------C--CC----------c------------------ccc-CCCCCceEEEEeeEEeccC--
Confidence 987542100 0 00 0 000 0001356999999998863
Q ss_pred CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHH
Q 005561 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (691)
Q Consensus 552 ~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIr 631 (691)
++++|+|+||+|+|||++||||+||||||||+++|+|+| |++|+|++||+|+++++.+++|++|+||+|||+||+||||
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence 357999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 632 ENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 632 eNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
|||++|+|+ ++|||+++||+.|+++|||++||+||||.+
T Consensus 441 eNI~~g~~~--~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 441 DNVLLGNPD--ASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred HHhhcCCCC--CCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 999999874 899999999999999999999999999986
No 12
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=8.5e-63 Score=566.85 Aligned_cols=457 Identities=29% Similarity=0.451 Sum_probs=388.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 163 WGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVW 242 (691)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (691)
++.++.+.+ ++ .+..++++.++..++.+..|++++.++|.+. ......+.....+++++++..++.+...+......
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLG 80 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666 66 7788888888888999999999999999887 22223333333444444455555555566666677
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005561 243 EKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIL 322 (691)
Q Consensus 243 ~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil 322 (691)
.++..++|.++|++++++|+++|+++++|++++|+++|++.+++.+..... .....+..+++.+++++.++|.+++++
T Consensus 81 ~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~l~~ 158 (567)
T COG1132 81 QKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLV--LVFTSILLLIGSLVLLFSLSWRLALIL 158 (567)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 899999999999999999999999999999999999999999999887632 233356777888889999999999887
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 323 GVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLN 402 (691)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 402 (691)
++..+++.+...++.++.++..+...+..+++++.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.....+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (567)
T COG1132 159 LLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALL 238 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666655566677777788889999999999999999999999999999999988888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Q 005561 403 ESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDAL 482 (691)
Q Consensus 403 ~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~ 482 (691)
.++..++..+..++++++|++.+..|.+++|.+++|+.+...+..|+..+...+..++.+..+.+|+.++++.++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~-- 316 (567)
T COG1132 239 APLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVE-- 316 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc--
Confidence 777888888888999999999999999999999999999999999999999999999999999999999998643100
Q ss_pred hcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEE
Q 005561 483 ANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLT 562 (691)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~ 562 (691)
.. +. + .....|+|+|+||+|+|++ ++++|+|+||+
T Consensus 317 ---------~~--~~------------------------------~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~ 351 (567)
T COG1132 317 ---------DP--PD------------------------------P--LKDTIGSIEFENVSFSYPG--KKPVLKDISFS 351 (567)
T ss_pred ---------CC--CC------------------------------C--CCCCCCeEEEEEEEEEcCC--CCccccCceEE
Confidence 00 00 0 0112467999999999973 46899999999
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCC
Q 005561 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN 642 (691)
Q Consensus 563 I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~ 642 (691)
|+|||++||||+||||||||++||+|||+|++|+|+|||+|+++++.++||++|++|+||++||+|||+|||++|+|+
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~-- 429 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD-- 429 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred CCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 643 VSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 643 ~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
++|||+++||+.|++||||+++|+||||.+.
T Consensus 430 at~eei~~a~k~a~~~d~I~~lp~g~dt~vg 460 (567)
T COG1132 430 ATDEEIEEALKLANAHEFIANLPDGYDTIVG 460 (567)
T ss_pred CCHHHHHHHHHHhChHHHHHhCcccccceec
Confidence 8999999999999999999999999999985
No 13
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=7e-63 Score=610.82 Aligned_cols=466 Identities=21% Similarity=0.267 Sum_probs=372.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP--EPLWKLLSKVGLLYALEPIFTVIFVMNMN 239 (691)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (691)
.++.++++++++++.++++++++++..++..+.|++++.++|.+..... .....+...++++.++..++.++..+...
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~ 891 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNN 891 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888889999999999999997753211 11112222333344444556667777788
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhcc--cChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 005561 240 TVWEKVMSIVKAQIFRRVLIQKAEFFDR--YKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQ 317 (691)
Q Consensus 240 ~~~~~~~~~LR~~lf~~ll~lp~~~f~~--~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~ 317 (691)
.+++++..++|.++|++++++|+.||++ +++|++++|+++|++.+++.+...+. .++..++.+++.++++++++|.
T Consensus 892 ~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~--~~~~~i~~~i~~~~~~~~~~~~ 969 (1466)
T PTZ00265 892 VIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIV--IFTHFIVLFLVSMVMSFYFCPI 969 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999986 88999999999999999998887665 3556667778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH-HHH-----------------HHHHHHHHHHHHHHHHchHHHHHHhcchHHHHH
Q 005561 318 LAPILGVLVLTVSVLVAVYKRSTVPV-FKA-----------------HGLAQASIADCVTETFSAIRTVRSFGGEKRQML 379 (691)
Q Consensus 318 L~lil~~~~~~~~~~~~~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~ 379 (691)
++++++++++++ ...+.++.+.. .++ ..+..++.+..+.|+++|+++||+|+.|+++.+
T Consensus 970 l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~ 1046 (1466)
T PTZ00265 970 VAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCN 1046 (1466)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHH
Confidence 886644322222 22222211111 001 122244567789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 380 MFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDL 459 (691)
Q Consensus 380 ~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l 459 (691)
+|.+..++..+...+.....++...+..++..+..++++|+|++++..|.+|+|++++++.+......++..+...+.++
T Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~ 1126 (1466)
T PTZ00265 1047 LIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDS 1126 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888777777778778788888899999999999999999999998876655556788899999999
Q ss_pred HHHHHHHHHHHHHhcccccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEE
Q 005561 460 RGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDIC 539 (691)
Q Consensus 460 ~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~ 539 (691)
+++.++.+|+.++++.++..+. ....+ . ....+....|.|+
T Consensus 1127 ~~a~~a~~ri~~ll~~~~~~~~-----------~~~~~----------~------------------~~~~~~~~~g~I~ 1167 (1466)
T PTZ00265 1127 ENAKLSFEKYYPLIIRKSNIDV-----------RDNGG----------I------------------RIKNKNDIKGKIE 1167 (1466)
T ss_pred HHHHHHHHHHHHHHCCCCcCCC-----------CCCcc----------c------------------ccccCCCCCceEE
Confidence 9999999999999976421000 00000 0 0000012357899
Q ss_pred EEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC---------------------------
Q 005561 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP--------------------------- 592 (691)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p--------------------------- 592 (691)
|+||+|+||++++.+||+|+||+|++||+|||||+||||||||++||+|||+|
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 99999999865556899999999999999999999999999999999999999
Q ss_pred ---------------------------CCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCH
Q 005561 593 ---------------------------TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSK 645 (691)
Q Consensus 593 ---------------------------~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sd 645 (691)
++|+|+|||+|+++++.++||++|+||+|||+||+|||||||+||+|+ +++
T Consensus 1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~--at~ 1325 (1466)
T PTZ00265 1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED--ATR 1325 (1466)
T ss_pred cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC--CCH
Confidence 699999999999999999999999999999999999999999999874 799
Q ss_pred HHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 646 DDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 646 eeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
|||++||+.|++||||++||+||||.+.
T Consensus 1326 eeI~~A~k~A~l~~fI~~LP~GydT~VG 1353 (1466)
T PTZ00265 1326 EDVKRACKFAAIDEFIESLPNKYDTNVG 1353 (1466)
T ss_pred HHHHHHHHHcCCHHHHHhCccccCCccC
Confidence 9999999999999999999999999874
No 14
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.5e-62 Score=561.45 Aligned_cols=459 Identities=20% Similarity=0.250 Sum_probs=375.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC--chHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 005561 163 WGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLI-GARP--EPLWK--LLSKVGLLYALEPIFTVIFVMN 237 (691)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~-~~~~--~~l~~--~l~~~~~~~~~~~~~~~~~~~~ 237 (691)
+++++++++++++.+++++++.++..++.+..|++++.++|... .+.. ..... ....++++.++..++.++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466788899998999999999999999999999999999764 2211 00111 1112222334445555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHH
Q 005561 238 MNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQ 317 (691)
Q Consensus 238 ~~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~ 317 (691)
......++..++|.++|+|++++|..+|+++++|++++|+++|++.+++++...+.. .+..++.+++.++++++++|+
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~ 161 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISP--LVAALVVILVLTIGLSFFDLT 161 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999999999999999999998876653 455666778888899999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 005561 318 LAPILGVLVLTVSV-LVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLG 396 (691)
Q Consensus 318 L~lil~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~ 396 (691)
+++++++.++++.+ ...++.++.++..++..+..+++++.+.|.++|+++||+|+.|+++.++|++..+++.+...+..
T Consensus 162 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (574)
T PRK11160 162 LALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQA 241 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876554443333 22344455455666677788889999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005561 397 TFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFT-LTFAVQGLVNTFGDLRGTFAAVERINSILST 475 (691)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~-l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~ 475 (691)
+..+....+..++..+..++++++|++++ +|.+++|.++++..|... ...|+..+.+.+..++++.++.+|+.++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~ 320 (574)
T PRK11160 242 NLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQ 320 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88777777777777777778888899884 799999999998877644 4568888999999999999999999999875
Q ss_pred cccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCccc
Q 005561 476 TEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVI 555 (691)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~v 555 (691)
++..+ . + .. . ......+.|+|+||+|+|+++ ++++
T Consensus 321 ~~~~~-----------~-~-~~------------------------------~-~~~~~~~~i~~~~v~f~y~~~-~~~i 355 (574)
T PRK11160 321 KPEVT-----------F-P-TT------------------------------S-TAAADQVSLTLNNVSFTYPDQ-PQPV 355 (574)
T ss_pred CCCCC-----------C-C-cc------------------------------c-CCCCCCCeEEEEEEEEECCCC-CCcc
Confidence 42100 0 0 00 0 000124679999999999742 3579
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHh
Q 005561 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (691)
Q Consensus 556 L~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~ 635 (691)
|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+||++||+|||+|||+
T Consensus 356 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~ 435 (574)
T PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLL 435 (574)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 636 YGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 636 lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
+|+|+ ++||++++|++.++++|||++ |+||||.+
T Consensus 436 ~~~~~--~~~~~i~~al~~~~l~~~i~~-p~GldT~v 469 (574)
T PRK11160 436 LAAPN--ASDEALIEVLQQVGLEKLLED-DKGLNAWL 469 (574)
T ss_pred cCCCc--cCHHHHHHHHHHcCCHHHHcC-ccccCchh
Confidence 99874 799999999999999999999 99999976
No 15
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.4e-61 Score=558.88 Aligned_cols=463 Identities=24% Similarity=0.324 Sum_probs=382.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLW-KLLSKVGLLYALEPIFTVIFVMNMNT 240 (691)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (691)
.+++++++++++++.++..+++.++..++..+.|++++.++|.+.+++..... .....+++++++..++.++..+...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 91 (582)
T PRK11176 12 TFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISW 91 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888777777777777788899999999987654322222 22222222334444455555556667
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005561 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (691)
Q Consensus 241 ~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~l 320 (691)
...++...+|.++|++++++|..+|++++.|++++|+++|++.+++.+...+. ..+..+..++++++++++++|++++
T Consensus 92 ~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~l~l 169 (582)
T PRK11176 92 VSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALI--TVVREGASIIGLFIMMFYYSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999988776654 2456677778888889999999988
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (691)
Q Consensus 321 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~ 400 (691)
++++.+++..++..+..++.++..++..+..++..+.+.|.++|+++||+++.|+.+.++|++..+++.+...+..+...
T Consensus 170 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T PRK11176 170 ILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665555555555555555555666666777888899999999999999999999999999999999999988888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Q 005561 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (691)
Q Consensus 401 ~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~ 480 (691)
....+..++..+..++++++|++.+.+|.+|+|+++++..+...+..|++.+.+.+..++.+..+.+|+.++++.++.++
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 329 (582)
T PRK11176 250 ISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 77777777777777888889999999999999999999999999999999999999999999999999999886532100
Q ss_pred hhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCccccccee
Q 005561 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLN 560 (691)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Is 560 (691)
.+ . .......++|+|+||+|+|+++ ++++|+|+|
T Consensus 330 ---------------~~----------~--------------------~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~ 363 (582)
T PRK11176 330 ---------------EG----------K--------------------RVIERAKGDIEFRNVTFTYPGK-EVPALRNIN 363 (582)
T ss_pred ---------------CC----------C--------------------cCCCCCCCeEEEEEEEEecCCC-CCccccCce
Confidence 00 0 0000123579999999999743 467999999
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCC
Q 005561 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640 (691)
Q Consensus 561 L~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~ 640 (691)
|+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+|||||+++|+|||||||++|+|+
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 443 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE 443 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 641 ENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 641 ~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
+++|||+++||+.++++|||++||+||||.+.
T Consensus 444 -~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig 475 (582)
T PRK11176 444 -QYSREQIEEAARMAYAMDFINKMDNGLDTVIG 475 (582)
T ss_pred -CCCHHHHHHHHHHhCcHHHHHhcccccCceeC
Confidence 47999999999999999999999999999764
No 16
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.6e-61 Score=552.12 Aligned_cols=450 Identities=20% Similarity=0.259 Sum_probs=368.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 174 KLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLI-GARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKA 251 (691)
Q Consensus 174 ~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~-~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~ 251 (691)
|+.+..++++.++..++.+..|++++.++|.+. .... ..+...+..+++++++..++.++..+...+...++..++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888899999999999999874 3222 22333333344444555566667777777888999999999
Q ss_pred HHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 005561 252 QIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSV 331 (691)
Q Consensus 252 ~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~~~ 331 (691)
++|+|++++|..+|+++++|++++|+++|++.+++.+...+.. .+..+..+++.++++++++|++++++++.+++..+
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQ--LVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765542 44555666777788899999988776555444444
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 332 LVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIY 411 (691)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~ 411 (691)
+..++.++..+..++..+..+++.+.+.|.++|+++||+|+.|+++.++|++..+++.+...+..+.......+..++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555545555666677788889999999999999999999999999999999888888777766666666666666
Q ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchhhh
Q 005561 412 ISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQ 491 (691)
Q Consensus 412 ~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~ 491 (691)
+..+++++++++.+.+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~----------- 308 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA----------- 308 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-----------
Confidence 666666667777888999999999999999999999999999999999999999999999986421000
Q ss_pred cccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEE
Q 005561 492 QKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTAL 571 (691)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAI 571 (691)
+ .. +.. ....+.|+|+||+|+|+++ ++++|+|+||+|+|||++||
T Consensus 309 --~-~~------------------------------~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~i 353 (529)
T TIGR02857 309 --G-KA------------------------------PVT-AAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVAL 353 (529)
T ss_pred --C-Cc------------------------------CCC-CCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEE
Confidence 0 00 000 0012579999999999843 35799999999999999999
Q ss_pred ECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHH
Q 005561 572 VGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKA 651 (691)
Q Consensus 572 VG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~A 651 (691)
||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|||++|+|||||||++|+|+ ++||++++|
T Consensus 354 vG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~--~~~~~i~~a 431 (529)
T TIGR02857 354 VGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPD--ASDAEIRRA 431 (529)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCC--CCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999764 689999999
Q ss_pred HHHcCcHHHHhcCCcccccchh
Q 005561 652 AKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 652 l~~A~l~dfI~~LP~GydT~~~ 673 (691)
|+.++++|||+++|+||||.+.
T Consensus 432 ~~~~~l~~~i~~lp~Gldt~v~ 453 (529)
T TIGR02857 432 LERAGLDEFVAALPQGLDTLIG 453 (529)
T ss_pred HHHcCcHHHHHhCcccccchhc
Confidence 9999999999999999999863
No 17
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2e-60 Score=548.30 Aligned_cols=462 Identities=26% Similarity=0.379 Sum_probs=392.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 163 WGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPE-PLWKLLSKVGLLYALEPIFTVIFVMNMNTV 241 (691)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (691)
++.++.+++++++.+++++++.++..++.+..|++++.++|........ .++.....+++++++..++.++..+...+.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (571)
T TIGR02203 2 FRRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWV 81 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888889999999999999999999999977643322 233333334444555556666666777888
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005561 242 WEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPI 321 (691)
Q Consensus 242 ~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~li 321 (691)
+.++...+|..+|+++++.|.++|++.+.|++.+|+++|++.+++.+...+.. .+..+..++++++++++++|+++++
T Consensus 82 ~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~~l~~i 159 (571)
T TIGR02203 82 SNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIV--LVRETLTVIGLFIVLLYYSWQLTLI 159 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88999999999999999999999999999999999999999999988766653 4566777888888999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 322 LGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSL 401 (691)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~ 401 (691)
+++++++..++..++.++.++..++..+.+++..+.+.|.++|+++||+++.|+++.++|++..++..+...+..+..+.
T Consensus 160 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (571)
T TIGR02203 160 VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI 239 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666666666667777788888999999999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh
Q 005561 402 NESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDA 481 (691)
Q Consensus 402 ~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~ 481 (691)
...+..+...+..++++++|++++.+|.+|+|.++++..+...+..|+..+.+.+..++++..+.+|+.++++.++..+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~- 318 (571)
T TIGR02203 240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD- 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-
Confidence 7777777777788888899999999999999999999999999999999999999999999999999999987542100
Q ss_pred hhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeE
Q 005561 482 LANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNL 561 (691)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL 561 (691)
.. . .......++|+++||+|+|+++ +.++|+|+||
T Consensus 319 --------------~~----------~--------------------~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl 353 (571)
T TIGR02203 319 --------------TG----------T--------------------RAIERARGDVEFRNVTFRYPGR-DRPALDSISL 353 (571)
T ss_pred --------------CC----------C--------------------CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeE
Confidence 00 0 0000124579999999999743 4579999999
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCC
Q 005561 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE 641 (691)
Q Consensus 562 ~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~ 641 (691)
+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|||+||+|||||||++++++
T Consensus 354 ~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~- 432 (571)
T TIGR02203 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE- 432 (571)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999752
Q ss_pred CCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 642 NVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 642 ~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
+++++++++||+.+++++++.+||+||||.+.
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~ 464 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCcccceec
Confidence 47999999999999999999999999999874
No 18
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-62 Score=569.55 Aligned_cols=452 Identities=29% Similarity=0.408 Sum_probs=373.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 177 LGLSVLTLIGCTTCTLSMPI---FSGRFFEVLIGARPE----PLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIV 249 (691)
Q Consensus 177 ~~~~ll~~l~~~~~~l~~P~---~~~~iiD~l~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 249 (691)
+++.++..+.+.+-++..|+ +.+.++|.+...... ........+..+.++..+..++...++.+.++|...++
T Consensus 27 ~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~ri 106 (1228)
T KOG0055|consen 27 YLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARI 106 (1228)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444554554 567888877543311 11122222222223334455667778888999999999
Q ss_pred HHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005561 250 KAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTV 329 (691)
Q Consensus 250 R~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~ 329 (691)
|.++++.+++++++|||.+..|++.+++++|++.+++.+++.+. .++..+..++..+++.|++.|+|+++.+...++.
T Consensus 107 R~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg--~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli 184 (1228)
T KOG0055|consen 107 RSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG--NFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLI 184 (1228)
T ss_pred HHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 4678888899999999999999999887777776
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 330 SVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409 (691)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~ 409 (691)
.+....+.+...+...+..+..++..+.+.|++.++|||.+|+.|+.+.++|.+..+...+..++.+.+.++...+..++
T Consensus 185 ~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~ 264 (1228)
T KOG0055|consen 185 AIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFL 264 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 66666666655556666666667777899999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchh
Q 005561 410 IYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERD 489 (691)
Q Consensus 410 ~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~ 489 (691)
.+......+|+|+.++..+..+.|+++..+..+..-...+.+....+..+..+.++..+|.++++..+.-+.
T Consensus 265 ~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~-------- 336 (1228)
T KOG0055|consen 265 LFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDP-------- 336 (1228)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCc--------
Confidence 999999999999999999999999987666555444556666777788889999999999999876431110
Q ss_pred hhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEE
Q 005561 490 IQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVT 569 (691)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~v 569 (691)
.. .. ........|+|||+||+|+||.|++.++|+|+||+|++||+|
T Consensus 337 ---~~-~~------------------------------~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~v 382 (1228)
T KOG0055|consen 337 ---YS-KG------------------------------GRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTV 382 (1228)
T ss_pred ---cc-cc------------------------------CCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEE
Confidence 00 00 001113478999999999999999889999999999999999
Q ss_pred EEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHH
Q 005561 570 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDII 649 (691)
Q Consensus 570 AIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~ 649 (691)
||||+|||||||+++||.|||+|++|+|+|||.|+++++.++||++||+|.|||.||++||+|||+||+|| +|++|+.
T Consensus 383 alVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d--at~~~i~ 460 (1228)
T KOG0055|consen 383 ALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD--ATREEIE 460 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc--ccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999886 7999999
Q ss_pred HHHHHcCcHHHHhcCCcccccchhh
Q 005561 650 KAAKAANAHDFIISLPQVWLSKSHF 674 (691)
Q Consensus 650 ~Al~~A~l~dfI~~LP~GydT~~~~ 674 (691)
+|||+|++||||.+||+||||.+--
T Consensus 461 ~a~k~ana~~fi~~lp~g~~T~vge 485 (1228)
T KOG0055|consen 461 EAAKAANAHDFILKLPDGYDTLVGE 485 (1228)
T ss_pred HHHHHccHHHHHHhhHHhhcccccC
Confidence 9999999999999999999998743
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.5e-60 Score=544.46 Aligned_cols=456 Identities=22% Similarity=0.305 Sum_probs=358.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 163 WGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWK---LLSKVGLLYALEPIFTVIFVMNMN 239 (691)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~---~l~~~~~~~~~~~~~~~~~~~~~~ 239 (691)
++++..+++++++.+...+++.++..++.+..|++++.++|.+.......... +...++++.++..++.+...+...
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (592)
T PRK10790 11 LKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFN 90 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777787888788888888899999999999999876432211111 111122222333444555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 005561 240 TVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLA 319 (691)
Q Consensus 240 ~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~ 319 (691)
....++..++|.++|++++++|.++|+++++|++++|+++|++.+++.+...+.. ++..+..+++.++++++++|+++
T Consensus 91 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~ 168 (592)
T PRK10790 91 RAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVAT--VLRSAALIGAMLVAMFSLDWRMA 168 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888999999999999999999999999999999999999999988776542 45566667777788889999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 320 PILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFK 399 (691)
Q Consensus 320 lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~ 399 (691)
+++++.+++.++...++.++.++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..
T Consensus 169 li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (592)
T PRK10790 169 LVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLD 248 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77555444444444444444444555556667778889999999999999999999999999998888777766665544
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005561 400 SLN-ESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEI 478 (691)
Q Consensus 400 ~~~-~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~ 478 (691)
... ..+..+...+..+++++++++ +..|.+++|.++++..|...+..|++.+...+.+++++..+.+|+.++++.++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 327 (592)
T PRK10790 249 GFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQ 327 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 432 223333333333333334444 578999999999999999999999999999999999999999999999865321
Q ss_pred chhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccc
Q 005561 479 DDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNG 558 (691)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~ 558 (691)
+. ... + .....++|+|+||+|+|++ +.++|+|
T Consensus 328 ~~---------------~~~-----------------------------~--~~~~~~~i~~~~v~f~y~~--~~~il~~ 359 (592)
T PRK10790 328 QY---------------GND-----------------------------D--RPLQSGRIDIDNVSFAYRD--DNLVLQN 359 (592)
T ss_pred cC---------------CCC-----------------------------c--cCCCCCeEEEEEEEEEeCC--CCceeec
Confidence 00 000 0 0011357999999999973 3579999
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCC
Q 005561 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638 (691)
Q Consensus 559 IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~ 638 (691)
+||+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|||+||+|||||||++|+
T Consensus 360 i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~ 439 (592)
T PRK10790 360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR 439 (592)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 639 PDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 639 p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
+++|+++++||+.+|++|+|++||+||||.+
T Consensus 440 ---~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i 470 (592)
T PRK10790 440 ---DISEEQVWQALETVQLAELARSLPDGLYTPL 470 (592)
T ss_pred ---CCCHHHHHHHHHHcCcHHHHHhccccccccc
Confidence 3799999999999999999999999999976
No 20
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.7e-59 Score=540.98 Aligned_cols=466 Identities=28% Similarity=0.447 Sum_probs=379.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMNT 240 (691)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (691)
.++.++++++++++.+.+.+++.++..++.+..|++++.++|.+..... ..+...+..+++++++..++.+...+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 5 PLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888899999999999999998653222 222222222333333344445555566677
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005561 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (691)
Q Consensus 241 ~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~l 320 (691)
+..++...+|..+|++++++|..+|++.++|++++|+++|++.+++++...+. ..+..+..+++.++++++++|++++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLS--MALRNALMCIGGLIMMFITSPKLTS 162 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88899999999999999999999999999999999999999999988876554 2455666677788889999999987
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (691)
Q Consensus 321 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~ 400 (691)
++++.+++..++..++.++.++..++..+..+++.+.+.|.++|+++||+++.|+.+.++|++..++..+...+..+...
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (576)
T TIGR02204 163 LVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRA 242 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76555554444444555555556666667777888899999999999999999999999999999888887777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Q 005561 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (691)
Q Consensus 401 ~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~ 480 (691)
....+..+...+..++++++|++++.+|.+|+|+++++..++..+..|+..+.+.+.+++.+..+++|+.++++.++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 322 (576)
T TIGR02204 243 LLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIK 322 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 55555555555666777888999999999999999999999999999999999999999999999999999987532100
Q ss_pred hhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCccccccee
Q 005561 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLN 560 (691)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Is 560 (691)
... .. .. ......+.|+|+||+|+|++++++++|+|+|
T Consensus 323 -----------~~~-~~-----------------------------~~-~~~~~~~~i~~~~v~f~y~~~~~~~iL~~in 360 (576)
T TIGR02204 323 -----------APA-HP-----------------------------KT-LPVPLRGEIEFEQVNFAYPARPDQPALDGLN 360 (576)
T ss_pred -----------CCC-CC-----------------------------cc-CCcCCCceEEEEEEEEECCCCCCCcccccee
Confidence 000 00 00 0001135799999999998533357999999
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCC
Q 005561 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640 (691)
Q Consensus 561 L~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~ 640 (691)
|+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||||||++|+|+
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~ 440 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD 440 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 641 ENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 641 ~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
.++|+++++++.++++++++++|+|+||.+.
T Consensus 441 --~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~ 471 (576)
T TIGR02204 441 --ATDEEVEAAARAAHAHEFISALPEGYDTYLG 471 (576)
T ss_pred --CCHHHHHHHHHHcCcHHHHHhCCCCCCceeC
Confidence 6899999999999999999999999999864
No 21
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.2e-59 Score=537.81 Aligned_cols=460 Identities=21% Similarity=0.265 Sum_probs=372.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 163 WGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVW 242 (691)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (691)
+++++++++++|+.++.++++.++..++.++.|++++.++|.+...+. ... .+...++..++..+..++......++.
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-VLP-TLALWAGFGVFNTIAYVLVAREADRLA 84 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999988999999999999999999999998764322 111 111111122222233333333344555
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005561 243 EKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIL 322 (691)
Q Consensus 243 ~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil 322 (691)
.++..++|.++|+|++++|+++|+++++|++++|+++|++.+++.+...+.. .+..++.+++.+++++.++|++++++
T Consensus 85 ~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~li~ 162 (585)
T TIGR01192 85 HGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQ--HLATFVALFLLIPTAFAMDWRLSIVL 162 (585)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677889999999999999999999999999999999999887765542 34455556666778899999999876
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 323 GVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLN 402 (691)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 402 (691)
++++++..++..++.++.++..++..+..+++.+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+..+..
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (585)
T TIGR01192 163 MVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALA 242 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555555555555555556666677788889999999999999999999999999999998888887777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Q 005561 403 ESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDAL 482 (691)
Q Consensus 403 ~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~ 482 (691)
..+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+.+.+..++.+..+++|+.++++.++..+
T Consensus 243 ~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~-- 320 (585)
T TIGR01192 243 SGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQRE-- 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc--
Confidence 666666677777888899999999999999999999999999999999999999999999999999999886532100
Q ss_pred hcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEE
Q 005561 483 ANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLT 562 (691)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~ 562 (691)
+..+ ........+.|+|+||+|+|++ +.++|+|+||+
T Consensus 321 -----------~~~~------------------------------~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~ 357 (585)
T TIGR01192 321 -----------EPAD------------------------------APELPNVKGAVEFRHITFEFAN--SSQGVFDVSFE 357 (585)
T ss_pred -----------CCcc------------------------------CCCCCCCCCeEEEEEEEEECCC--CCccccceeEE
Confidence 0000 0000012457999999999973 24689999999
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCC
Q 005561 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN 642 (691)
Q Consensus 563 I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~ 642 (691)
|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++++||+||+++|++||+|||++|+|+
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~-- 435 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG-- 435 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 643 VSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 643 ~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
++++|+++|++.+++++++.++|+||||.+.
T Consensus 436 ~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~ 466 (585)
T TIGR01192 436 ATDEEVYEAAKAAAAHDFILKRSNGYDTLVG 466 (585)
T ss_pred CCHHHHHHHHHHhCcHHHHHhccccccchhc
Confidence 6899999999999999999999999999753
No 22
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=5.3e-59 Score=537.64 Aligned_cols=459 Identities=22% Similarity=0.295 Sum_probs=368.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 163 WGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVW 242 (691)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (691)
.++++.++++++..+.+.+++.++..++.+..|++++.++|.+..+. ..+..+..+++++++..+..+.......+..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIFPLLAAWAGFGLFNIIAGVLVARHADRLA 84 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888999999999999999876432 2222222222222222222333333334455
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005561 243 EKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIL 322 (691)
Q Consensus 243 ~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil 322 (691)
.++...+|.++|+|++++|+.+|++.++|++++|+++|++++.+.+...+.. .+..++.+++.++++++++|++++++
T Consensus 85 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~l~~ 162 (588)
T PRK13657 85 HRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMRE--HLATLVALVVLLPLALFMNWRLSLVL 162 (588)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667789999999999999999999999999999999998776655542 34444555666777889999998776
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 323 GVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLN 402 (691)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 402 (691)
++++++..++...+.++..+..++..+..+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+.....
T Consensus 163 l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (588)
T PRK13657 163 VVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALA 242 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444455555555556666677888889999999999999999999999999999999988888877776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Q 005561 403 ESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDAL 482 (691)
Q Consensus 403 ~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~ 482 (691)
..+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+.+.+..++.+..+++|+.++++.++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~-- 320 (588)
T PRK13657 243 SVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVR-- 320 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC--
Confidence 666667777778888899999999999999999999999999999999999999999999999999999876532100
Q ss_pred hcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEE
Q 005561 483 ANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLT 562 (691)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~ 562 (691)
.... ........+.|+++||+|+|++ ++++|+|+||+
T Consensus 321 -----------~~~~------------------------------~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~ 357 (588)
T PRK13657 321 -----------DPPG------------------------------AIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFE 357 (588)
T ss_pred -----------CCCC------------------------------CCCcCCCCCeEEEEEEEEEeCC--CCceecceeEE
Confidence 0000 0000012357999999999973 24699999999
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCC
Q 005561 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN 642 (691)
Q Consensus 563 I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~ 642 (691)
|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|||+||+|||||||++++|+
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~-- 435 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD-- 435 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 643 VSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 643 ~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
++||++++|++.++++++|.++|+||||.+
T Consensus 436 ~~d~~i~~al~~~~l~~~i~~lp~gldt~i 465 (588)
T PRK13657 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVV 465 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhCcccccchh
Confidence 789999999999999999999999999975
No 23
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=8.6e-59 Score=533.19 Aligned_cols=440 Identities=23% Similarity=0.331 Sum_probs=355.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 005561 184 LIGCTTCTLSMPIFSGRFFEVLIGARPE--PLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQK 261 (691)
Q Consensus 184 ~l~~~~~~l~~P~~~~~iiD~l~~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp 261 (691)
.++..++.++.|++++.++|.+...... ....++..+++++++..++.++..+.......++..++|.++|+|++++|
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445567788899999999987543211 22222222333334444455555556667788999999999999999999
Q ss_pred hhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 005561 262 AEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICIL-FNIAPQLAPILGVLVLTVSVLVAVYKRST 340 (691)
Q Consensus 262 ~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l-~~is~~L~lil~~~~~~~~~~~~~~~~~~ 340 (691)
.++|+++++|++++|+++|++.++..+...+.. .+..+..++++++++ ++++|++++++++.+++..++..++.++.
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~ 161 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLT--LVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQL 161 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998776554432 333333344444444 57999998776555555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 341 VPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCL 420 (691)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~~ 420 (691)
.+..++..+..+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..+....+......+..++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 241 (569)
T PRK10789 162 HERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG 241 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666677788889999999999999999999999999999999888888877777666666666666677778889
Q ss_pred HHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchhhhcccchhhhh
Q 005561 421 GGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENI 500 (691)
Q Consensus 421 G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (691)
|++++.+|.+|+|.++++..|...+..|+..+.+.+..++.+.++.+|+.++++.++..+ . ..
T Consensus 242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~-------------~-~~--- 304 (569)
T PRK10789 242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVK-------------D-GS--- 304 (569)
T ss_pred HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc-------------C-CC---
Confidence 999999999999999999999999999999999999999999999999999987532100 0 00
Q ss_pred hhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHH
Q 005561 501 KLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKS 580 (691)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKS 580 (691)
.......++|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||
T Consensus 305 ----------------------------~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKS 355 (569)
T PRK10789 305 ----------------------------EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKS 355 (569)
T ss_pred ----------------------------CCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHH
Confidence 0000124679999999999742 45799999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHH
Q 005561 581 TIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDF 660 (691)
Q Consensus 581 TLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~df 660 (691)
||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+|+|+||+|||+|||++|+|+ ++++++++|++.++++|+
T Consensus 356 TLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~--~~~~~~~~~~~~~~l~~~ 433 (569)
T PRK10789 356 TLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPD--ATQQEIEHVARLASVHDD 433 (569)
T ss_pred HHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCC--CCHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999764 799999999999999999
Q ss_pred HhcCCcccccchh
Q 005561 661 IISLPQVWLSKSH 673 (691)
Q Consensus 661 I~~LP~GydT~~~ 673 (691)
|.++|+||||.+.
T Consensus 434 i~~lp~gl~t~~~ 446 (569)
T PRK10789 434 ILRLPQGYDTEVG 446 (569)
T ss_pred HHhCcCcccceec
Confidence 9999999999763
No 24
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.3e-57 Score=521.08 Aligned_cols=446 Identities=19% Similarity=0.224 Sum_probs=361.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 171 LKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGA-RPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIV 249 (691)
Q Consensus 171 ~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 249 (691)
+++|+.+...++++++..++.++.|++++.++|.+... +...++.++..+++++++..++.++..+...+...++..++
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888899999999999999987632 22333333334444455556666777777778889999999
Q ss_pred HHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005561 250 KAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTV 329 (691)
Q Consensus 250 R~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~ 329 (691)
|.++|+|++++|+. ..++..+++++|++.+++.+...... ..+..+.. ++.++++++++|++++++++.+++.
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~l~li~l~~~~l~ 154 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLF-AFFDAPWM-PIYLLVCFLLHPWIGILALGGAVVL 154 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHH-HHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999984 23667889999999999887652221 12223333 3344678899999987755544444
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 330 SVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409 (691)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~ 409 (691)
.++..+..+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+..+....+..++
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433444444455556667777888899999999999999999999999999999998888888777776666666666
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchh
Q 005561 410 IYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERD 489 (691)
Q Consensus 410 ~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~ 489 (691)
..+..++++++|++++.+|.+|+|.++++..+...+..|+..+.+.+..++.+..+.+|+.++++.++..+
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~--------- 305 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRD--------- 305 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc---------
Confidence 66777788889999999999999999999999999999999999999999999999999999986532100
Q ss_pred hhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEE
Q 005561 490 IQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVT 569 (691)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~v 569 (691)
+ .. + .....+.|+++||+|+|+++ ++++|+|+||+|++||++
T Consensus 306 ----~-~~------------------------------~--~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~ 347 (544)
T TIGR01842 306 ----P-AM------------------------------P--LPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEAL 347 (544)
T ss_pred ----C-CC------------------------------C--CCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEE
Confidence 0 00 0 00123579999999999742 357999999999999999
Q ss_pred EEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHH
Q 005561 570 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDII 649 (691)
Q Consensus 570 AIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~ 649 (691)
||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+||+|||++|++||+|||+++++ ++++++++
T Consensus 348 ~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~--~~~~~~~~ 425 (544)
T TIGR01842 348 AIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGE--NADPEKII 425 (544)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCC--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998865 37999999
Q ss_pred HHHHHcCcHHHHhcCCcccccch
Q 005561 650 KAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 650 ~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
+||+.++++|+++++|+||||.+
T Consensus 426 ~~~~~~~~~~~i~~l~~gl~t~~ 448 (544)
T TIGR01842 426 EAAKLAGVHELILRLPDGYDTVI 448 (544)
T ss_pred HHHHHhChHHHHHhCcccccccc
Confidence 99999999999999999999975
No 25
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.9e-57 Score=557.51 Aligned_cols=463 Identities=22% Similarity=0.305 Sum_probs=380.7
Q ss_pred HHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 163 WGLLWSLF-LKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTV 241 (691)
Q Consensus 163 ~~~l~~~~-~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (691)
+..++++. +.+++.++++++++++..++..+.|++++.++|.+.... ....+...++++.++..++.++..+++..+
T Consensus 47 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 47 FFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE--NVNDIIFSLVLIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554 567777888888888888888999999999999764221 222223333444455566777777888899
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005561 242 WEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPI 321 (691)
Q Consensus 242 ~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~li 321 (691)
++++..++|.++|++++++|++||++++.|++++|+++|++.+++.+...+. .++..++.++++++++|+++|+|+++
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~--~~~~~~~~~i~~~i~~~~~sw~Lalv 202 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFI--TIFTYASAFLGLYIWSLFKNARLTLC 202 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999887765 35667778889999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 322 LGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSL 401 (691)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~ 401 (691)
+++++++++++..++.++.++..+...+..++..+.+.|+++|+++||+|+.|+.+.++|.+....+.+...+.....++
T Consensus 203 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~ 282 (1466)
T PTZ00265 203 ITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESL 282 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666666666666655555666666678889999999999999999999999999999999998888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005561 402 NESLTRIAIYISLLALYCLGGSKVKAG--------ELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSIL 473 (691)
Q Consensus 402 ~~~l~~~~~~~~~~~il~~G~~lv~~g--------~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il 473 (691)
...+..++.++..++++|+|++++.+| .+++|.++++..+.......+..+...+..++.+.++.+|+.+++
T Consensus 283 ~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii 362 (1466)
T PTZ00265 283 HIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEII 362 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777888889999999999886 588999988776666555666677778889999999999999999
Q ss_pred cccccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCc
Q 005561 474 STTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDV 553 (691)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~ 553 (691)
+.++..+ . . .+ + .... ..+.|+|+||+|+|+++++.
T Consensus 363 ~~~~~~~-----------~-~-~~---------~---------------------~~~~-~~~~I~~~nVsf~Y~~~~~~ 398 (1466)
T PTZ00265 363 NRKPLVE-----------N-N-DD---------G---------------------KKLK-DIKKIQFKNVRFHYDTRKDV 398 (1466)
T ss_pred cCCCCCC-----------C-C-CC---------C---------------------ccCC-CCCcEEEEEEEEEcCCCCCC
Confidence 7643100 0 0 00 0 0000 12379999999999865445
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEE-CCccCCCCChHHhhhceEEEeccCCcccccHHH
Q 005561 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV-GGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (691)
Q Consensus 554 ~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~I-dG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIre 632 (691)
++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++ ||+|+++++.++||++|+||+|+|+||++||+|
T Consensus 399 ~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~e 478 (1466)
T PTZ00265 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKN 478 (1466)
T ss_pred ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHH
Confidence 7999999999999999999999999999999999999999999999 679999999999999999999999999999999
Q ss_pred HHhcCCCC-------------------------------------------------------CCCCHHHHHHHHHHcCc
Q 005561 633 NIAYGLPD-------------------------------------------------------ENVSKDDIIKAAKAANA 657 (691)
Q Consensus 633 NI~lG~p~-------------------------------------------------------~~~sdeeI~~Al~~A~l 657 (691)
||++|++. .+++++++++||+.+++
T Consensus 479 NI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l 558 (1466)
T PTZ00265 479 NIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLI 558 (1466)
T ss_pred HHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCc
Confidence 99998521 13688999999999999
Q ss_pred HHHHhcCCcccccchh
Q 005561 658 HDFIISLPQVWLSKSH 673 (691)
Q Consensus 658 ~dfI~~LP~GydT~~~ 673 (691)
++||.+||+||||.+.
T Consensus 559 ~~~i~~lp~g~dT~vg 574 (1466)
T PTZ00265 559 HDFVSALPDKYETLVG 574 (1466)
T ss_pred HHHHHhCccccCceeC
Confidence 9999999999999874
No 26
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-59 Score=492.66 Aligned_cols=446 Identities=21% Similarity=0.282 Sum_probs=331.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 005561 177 LGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEP------IFTVIFVMNMNTVWEKVMSIVK 250 (691)
Q Consensus 177 ~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~LR 250 (691)
.+.++++.++.-+..+..|++.++++|.+.... ...+......+.+.+++. ++.-++.+....+.+-..+++-
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~-~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie 295 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTAPD-TFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIE 295 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcc-hhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHH
Confidence 345555555666777888999999999886222 122232222222222221 1222222222234456677889
Q ss_pred HHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHH
Q 005561 251 AQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTI-CILFNIAPQLAPILGVLVLTV 329 (691)
Q Consensus 251 ~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~l-i~l~~is~~L~lil~~~~~~~ 329 (691)
.++|+|+..+++.|+-++++||.+.-+....+.+. +....+. .....+..+.+++ .+...++||+++++.+.+.+.
T Consensus 296 ~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF--~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY 372 (790)
T KOG0056|consen 296 TELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVF--QIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLY 372 (790)
T ss_pred HHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHh--hcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999988877666655 3332222 1222333333333 334457999998876655444
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 330 SVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409 (691)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~ 409 (691)
+...........+..++......+-.+...|++-|.+|||-|++|+++.++|.+...++++...|....-.+.+.....+
T Consensus 373 ~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~I 452 (790)
T KOG0056|consen 373 CYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGI 452 (790)
T ss_pred hheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33221111111122222222223333467899999999999999999999999999999998887655444444444455
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchh
Q 005561 410 IYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERD 489 (691)
Q Consensus 410 ~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~ 489 (691)
..++.++...+.+|+|..+.+|+|+.+.|..|+.++..|++.++..+-.+|......|++.|+++++++.
T Consensus 453 i~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eV---------- 522 (790)
T KOG0056|consen 453 IGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEV---------- 522 (790)
T ss_pred hhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchh----------
Confidence 5555555555677888899999999999999999999999999999999999999999999999764311
Q ss_pred hhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEE
Q 005561 490 IQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVT 569 (691)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~v 569 (691)
.+.+ . ..+....+|.|+|+||+|+|+ +++|||+||||+++||+++
T Consensus 523 -vd~P--~------------------------------a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktv 567 (790)
T KOG0056|consen 523 -VDLP--G------------------------------APPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTV 567 (790)
T ss_pred -hcCC--C------------------------------CCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEE
Confidence 0000 0 001112368999999999996 5679999999999999999
Q ss_pred EEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHH
Q 005561 570 ALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDII 649 (691)
Q Consensus 570 AIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~ 649 (691)
|+|||||+||||+++||.||||.++|.|+|||+||+....+++|++||+||||..|||+||.+||+||+|+ +++|||.
T Consensus 568 AlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~--Asneevy 645 (790)
T KOG0056|consen 568 ALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPS--ASNEEVY 645 (790)
T ss_pred EEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCC--CChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 7999999
Q ss_pred HHHHHcCcHHHHhcCCcccccchh
Q 005561 650 KAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 650 ~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
+|++.|++||-|.++|+||+|.+.
T Consensus 646 aAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 646 AAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred HHHHHhhHHHHHhcCchhhhhhhh
Confidence 999999999999999999999874
No 27
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.7e-56 Score=559.39 Aligned_cols=463 Identities=19% Similarity=0.251 Sum_probs=343.2
Q ss_pred hHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 162 TWGLLWSLFLKHKLRLG-LSVLTLIGCTTCTLSMPIFSGRFFEVLIG-ARPEPLWKLLSKVGLLYALEPIFTVIFVMNMN 239 (691)
Q Consensus 162 ~~~~l~~~~~~~~~~~~-~~ll~~l~~~~~~l~~P~~~~~iiD~l~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (691)
.|+.++.|++...+... +.+++.++..++.+..++.++...|.... .+.......+..++++.++..++.++..+...
T Consensus 951 ~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~ 1030 (1522)
T TIGR00957 951 ELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVS 1030 (1522)
T ss_pred cHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667665433322 22233333445556667767666553221 11111111122223333333444444455566
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 005561 240 TVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLA 319 (691)
Q Consensus 240 ~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~ 319 (691)
..+.+...++|.+++++++++|++||+++++|++++|+++|++.+++.+...+. ..+..++.+++.++++++.+|+++
T Consensus 1031 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~--~~~~~~~~~i~~li~~~~~~~~~~ 1108 (1522)
T TIGR00957 1031 IGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIK--MFMGSLFNVIGALIVILLATPIAA 1108 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999999887665 345666677777777888888776
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 320 PILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFK 399 (691)
Q Consensus 320 lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~ 399 (691)
+++++++++..++..++.+..++..+...+.++.+.+++.|+++|+++||+|++|+++.+++.+..+...+.........
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1188 (1522)
T TIGR00957 1109 VIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1188 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444444445556555555556666777889999999999999999999999988888877776666554433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 005561 400 SLNESLTRIAIYISLLALYCLGGSKVK-AGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEI 478 (691)
Q Consensus 400 ~~~~~l~~~~~~~~~~~il~~G~~lv~-~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~ 478 (691)
.+......+ ++.+++++++++.+. .|.+++|.+.+++.|+..+..|+..+...+.+++.++++++|+.++++.+++
T Consensus 1189 ~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e 1265 (1522)
T TIGR00957 1189 RWLAVRLEC---VGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKE 1265 (1522)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 322222222 222334444555554 5889999999999999999999999999999999999999999999865431
Q ss_pred chhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccc
Q 005561 479 DDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNG 558 (691)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~ 558 (691)
++. ..++ . .+....+..|+|+|+||+|+|+++ .++||+|
T Consensus 1266 ~~~------------~~~~----------~------------------~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~ 1304 (1522)
T TIGR00957 1266 APW------------QIQE----------T------------------APPSGWPPRGRVEFRNYCLRYRED-LDLVLRH 1304 (1522)
T ss_pred ccc------------cccC----------C------------------CCCCCCCCCCcEEEEEEEEEeCCC-Ccccccc
Confidence 100 0000 0 000001135789999999999743 3479999
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCC
Q 005561 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638 (691)
Q Consensus 559 IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~ 638 (691)
+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|++|||||+||+|||||||+..
T Consensus 1305 is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~- 1383 (1522)
T TIGR00957 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF- 1383 (1522)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999843
Q ss_pred CCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 639 PDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 639 p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
.+++|||+++|+++|+++|||+++|+||||++.
T Consensus 1384 --~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~ 1416 (1522)
T TIGR00957 1384 --SQYSDEEVWWALELAHLKTFVSALPDKLDHECA 1416 (1522)
T ss_pred --cCCCHHHHHHHHHHcCcHHHHhhCccCCCceec
Confidence 247999999999999999999999999999873
No 28
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-55 Score=480.39 Aligned_cols=444 Identities=20% Similarity=0.268 Sum_probs=371.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005561 181 VLTLIGCTTCTLSMPIFSGRFFEVLIGAR-PEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLI 259 (691)
Q Consensus 181 ll~~l~~~~~~l~~P~~~~~iiD~l~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~ 259 (691)
.++.++..+..+.+.+++...++.++.++ ...++..+..+++++++..++.+.......+...++...+|..+++|+.+
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~ 85 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAK 85 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566666677777777776544 33455556666677777777777777777788889999999999999999
Q ss_pred CChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 005561 260 QKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRS 339 (691)
Q Consensus 260 lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~~~~~~~~~~~ 339 (691)
+++.+-++.++|++++.++..+++++.++...++. .+...+..+..++.+++++|.-+++++++++++.+++..+...
T Consensus 86 ~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq--~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~ 163 (559)
T COG4988 86 LGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQ--MFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLA 163 (559)
T ss_pred CChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998874 4555555566677789999999998888887777777677776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 340 TVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYC 419 (691)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~ 419 (691)
.++..+++......+++++.|.++|+.|+|+|+..+...++..+..+++++..++.-+..-.......++.+++++++..
T Consensus 164 a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv 243 (559)
T COG4988 164 AKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAV 243 (559)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777778888999999999999999999999999999999999999999998887776777778888877777666
Q ss_pred HHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchhhhcccchhh
Q 005561 420 LGGSKVKA-GELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDE 498 (691)
Q Consensus 420 ~G~~lv~~-g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (691)
+.+..... |.++....+.++.++--++.|+..++..++.-..+.++.+++..+++.+.... +..+..+
T Consensus 244 ~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~----------~~~~~~~- 312 (559)
T COG4988 244 YIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATP----------GSGEKAE- 312 (559)
T ss_pred HHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCC----------CCccccc-
Confidence 66666666 89999999999999999999999999999999999999999999987653110 0000000
Q ss_pred hhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCc
Q 005561 499 NIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAG 578 (691)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSG 578 (691)
........|+++|++|.||++ +++++|+||+++|||++||||+||||
T Consensus 313 -------------------------------~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaG 359 (559)
T COG4988 313 -------------------------------VANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAG 359 (559)
T ss_pred -------------------------------cccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCC
Confidence 000012246666999999853 38999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcH
Q 005561 579 KSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAH 658 (691)
Q Consensus 579 KSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~ 658 (691)
||||+++|+||++|++|+|.+||+|+++++.++||++++||+|+|+||+|||||||++|+|+ ++|||+++|++.+++.
T Consensus 360 KSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~--~s~e~i~~al~~a~l~ 437 (559)
T COG4988 360 KSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPD--ASDEEIIAALDQAGLL 437 (559)
T ss_pred HHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCc--CCHHHHHHHHHHhcHH
Confidence 99999999999999999999999999999999999999999999999999999999999885 7999999999999999
Q ss_pred HHHhcCCcccccchh
Q 005561 659 DFIISLPQVWLSKSH 673 (691)
Q Consensus 659 dfI~~LP~GydT~~~ 673 (691)
||++. |+|+||.+.
T Consensus 438 ~~v~~-p~GLdt~ig 451 (559)
T COG4988 438 EFVPK-PDGLDTVIG 451 (559)
T ss_pred HhhcC-CCcccchhc
Confidence 99999 999999873
No 29
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.3e-56 Score=510.07 Aligned_cols=461 Identities=13% Similarity=0.115 Sum_probs=352.4
Q ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 163 WGLLWSLFL-KHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTV 241 (691)
Q Consensus 163 ~~~l~~~~~-~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (691)
++.++++++ ++|+.+++.+++.++..++.+..|++++.++|..........+ .+++++++..++.++..+.....
T Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 80 (555)
T TIGR01194 5 IGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQGSLF----SFGGLCLLALLFRIGADIFPAYA 80 (555)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888 9999999999999999999999999998887743111111111 12223334445566666667778
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005561 242 WEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPI 321 (691)
Q Consensus 242 ~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~li 321 (691)
..++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++.. +. ..+..+..+++.++++++++|.++++
T Consensus 81 ~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~--~~~~~~~~~~~~~~~l~~~~~~L~li 157 (555)
T TIGR01194 81 GMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FP--PIAIALAIFFFCIAYLAYLSVPMFAI 157 (555)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 8899999999999999999999999999999999999999999998754 33 24555666677888899999999987
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 322 LGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEK--RQMLMFGRQVLAYQQSGIKLGTFK 399 (691)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~--~~~~~~~~~~~~~~~~~~k~~~~~ 399 (691)
+++.+++..++..+..++.++...+..+..+++++.+.|.++|++++|+|+.++ .+.+++.+..+++.+...+.....
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
T TIGR01194 158 TISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIF 237 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 655554444444444444445555666677888899999999999999999954 556788888887777766555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 005561 400 SLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEID 479 (691)
Q Consensus 400 ~~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~ 479 (691)
.....+..++..+...+.+++|++. |.+|+|++++|+.+...+..|+..+.+.+..++++.++++|+.++++.++.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~ 314 (555)
T TIGR01194 238 IAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEP 314 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3333333333333333344445443 7899999999999999999999999999999999999999999997632110
Q ss_pred hhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCC--Cccccc
Q 005561 480 DALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRP--DVVILN 557 (691)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~--~~~vL~ 557 (691)
+. ..+ .+..+ . .....+....++|+|+||+|+|++.+ +.++|+
T Consensus 315 ~~-------~~~-~~~~~----------~-----------------~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~ 359 (555)
T TIGR01194 315 EP-------ELE-LSDAD----------N-----------------VLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALG 359 (555)
T ss_pred cc-------ccc-ccccc----------c-----------------ccccccCCCCceEEEEEEEEEeCCCCCCcCceec
Confidence 00 000 00000 0 00000001235799999999997421 236999
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcC
Q 005561 558 GLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG 637 (691)
Q Consensus 558 ~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG 637 (691)
|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||+||++||++|+++|+
T Consensus 360 ~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--- 436 (555)
T TIGR01194 360 PIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--- 436 (555)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred CCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 638 LPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 638 ~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
.| ++++++++++++.++++++++++|+||||...
T Consensus 437 ~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~ 470 (555)
T TIGR01194 437 GE--HASLDNAQQYLQRLEIADKVKIEDGGFSTTTA 470 (555)
T ss_pred cc--chhHHHHHHHHHHcCCchhhcccccccCCccc
Confidence 23 36899999999999999999999999999644
No 30
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-56 Score=479.66 Aligned_cols=444 Identities=23% Similarity=0.358 Sum_probs=336.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 178 GLSVLTLIGCTTCTLSMPIFSGRFFEVLIGAR-PEPLW----KLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQ 252 (691)
Q Consensus 178 ~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~-~~~l~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~ 252 (691)
+.++.+++.+-+....+|.+.+.++|.+-..+ .+..+ ..+...+++-+...++..+....+..+.+++..+.-.+
T Consensus 33 ~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~ 112 (591)
T KOG0057|consen 33 FPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSD 112 (591)
T ss_pred HHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444446778889999999999873111 11222 22223333334455566666777888889999999999
Q ss_pred HHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHH
Q 005561 253 IFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTI-CILFNIAPQLAPILGVLVLTVSV 331 (691)
Q Consensus 253 lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~l-i~l~~is~~L~lil~~~~~~~~~ 331 (691)
+|+|++.++.++|.+..+|++.+.+..-...+..++...+. .++..++.+.... .+-.-..+..+++.++.+.....
T Consensus 113 vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~--~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a 190 (591)
T KOG0057|consen 113 VFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF--NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAA 190 (591)
T ss_pred HHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhe
Confidence 99999999999999999999999999888888877764433 1222222222221 11222334444333332222222
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 332 LVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIY 411 (691)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~ 411 (691)
+.....+.+.+..++.+++..+....+.|.+.|.++||+||.|+++.++|.....++.+.+.+.....++.+.....+..
T Consensus 191 ~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFs 270 (591)
T KOG0057|consen 191 FTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFS 270 (591)
T ss_pred eEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHH
Confidence 22122222233445566677777789999999999999999999999999999999999998887777766666666665
Q ss_pred HHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchhhh
Q 005561 412 ISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQ 491 (691)
Q Consensus 412 ~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~ 491 (691)
.....+.+.|..-+.+|.||+|+++....+..++..|+..++..+.++.++...+..+....+... +.+
T Consensus 271 v~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~-----------~i~ 339 (591)
T KOG0057|consen 271 VALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDE-----------DIQ 339 (591)
T ss_pred HHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh-----------hhh
Confidence 666666667777788999999999999999999999999999999999888777766554332110 000
Q ss_pred cccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEE
Q 005561 492 QKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTAL 571 (691)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAI 571 (691)
.. ..+.....+.|+|+||+|+|+ +++++|+++||+|++||+|||
T Consensus 340 ~~----------------------------------~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaI 383 (591)
T KOG0057|consen 340 EA----------------------------------ALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAI 383 (591)
T ss_pred hc----------------------------------cCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEE
Confidence 00 001112357899999999997 456799999999999999999
Q ss_pred ECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHH
Q 005561 572 VGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKA 651 (691)
Q Consensus 572 VG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~A 651 (691)
||+|||||||++++|+||+| ++|+|+|||+|+++++++++|+.|||||||..|||+||.+||.||+|+ +++|||.++
T Consensus 384 vG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~s--as~eeV~e~ 460 (591)
T KOG0057|consen 384 VGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPS--ASDEEVVEA 460 (591)
T ss_pred ECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCC--cCHHHHHHH
Confidence 99999999999999999999 999999999999999999999999999999999999999999999985 899999999
Q ss_pred HHHcCcHHHHhcCCcccccchh
Q 005561 652 AKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 652 l~~A~l~dfI~~LP~GydT~~~ 673 (691)
||+|++||.|.+||+||+|.++
T Consensus 461 ~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 461 CKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred HHHcCcHHHHHhccccchhhHh
Confidence 9999999999999999999886
No 31
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-55 Score=467.53 Aligned_cols=451 Identities=22% Similarity=0.293 Sum_probs=341.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 173 HKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVG---LLYALEPIFTVIFVMNMNTVWEKVMSIV 249 (691)
Q Consensus 173 ~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L 249 (691)
+|+.+.+++++.++..+..+..-..++++|-.-.-...........-.+ .+.+...+..|.-....+....++..++
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~l 93 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSAL 93 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6666777777666666655555556777775432111111111000000 0111122222222222233446788999
Q ss_pred HHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005561 250 KAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTV 329 (691)
Q Consensus 250 R~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~ 329 (691)
|.++|+++...+..-..+.++||+++|++.|+|.+++.+-..+.+ ...++...++..+.+-+++|++++.+++.++..
T Consensus 94 Rv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P--~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~ 171 (573)
T COG4987 94 RVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAP--AVVALVLIAVVTIGLSFFSIPLALLLGLILLLL 171 (573)
T ss_pred HHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877764 334444445555566688999987765554444
Q ss_pred HHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 330 SVLV-AVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRI 408 (691)
Q Consensus 330 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~ 408 (691)
.+++ ..+.+..++..+.....++.+.+.+.|.++|..+.+.||+++++.+.+.+....+.+.+.|..++..+...+..+
T Consensus 172 lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l 251 (573)
T COG4987 172 LLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLL 251 (573)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 344444455556666777888899999999999999999999999999999998999888888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccchhhhcccc
Q 005561 409 AIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLV-NTFGDLRGTFAAVERINSILSTTEIDDALANGLE 487 (691)
Q Consensus 409 ~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~-~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~ 487 (691)
+..+..+..+.+.+..+-.|..+.....+++...+..++++..+. ..+.++.+...+..|++++.+++++...
T Consensus 252 ~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~------ 325 (573)
T COG4987 252 IAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF------ 325 (573)
T ss_pred HHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCC------
Confidence 766666644444555566787776555555555567777777777 7788999999999999999876542110
Q ss_pred hhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCC
Q 005561 488 RDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGS 567 (691)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge 567 (691)
+ ++ +.+ ...-.++++||+|+||+ ++.++|+|+||++++||
T Consensus 326 ------~--~~-----------------------------~~~--~~~~~l~~~~vsF~y~~-~~~~~L~~~~l~l~~GE 365 (573)
T COG4987 326 ------P--DE-----------------------------QTA--TTGQALELRNVSFTYPG-QQTKALKNFNLTLAQGE 365 (573)
T ss_pred ------C--cc-----------------------------ccC--CccceeeeccceeecCC-CccchhhccceeecCCC
Confidence 0 00 000 00116999999999995 45689999999999999
Q ss_pred EEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHH
Q 005561 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDD 647 (691)
Q Consensus 568 ~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdee 647 (691)
+|||+|+|||||||+++||+|.|+|++|+|+++|.+++.++.+++|+.|++++|.++||+||+||||++++|+ +||||
T Consensus 366 kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~--AsDEe 443 (573)
T COG4987 366 KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPD--ASDEE 443 (573)
T ss_pred eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCC--CCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 89999
Q ss_pred HHHHHHHcCcHHHHhcCCcccccchh
Q 005561 648 IIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 648 I~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
+|+|++++|+++++++.|+||||++.
T Consensus 444 l~~aL~qvgL~~l~~~~p~gl~t~lg 469 (573)
T COG4987 444 LWAALQQVGLEKLLESAPDGLNTWLG 469 (573)
T ss_pred HHHHHHHcCHHHHHHhChhhhhchhc
Confidence 99999999999999999999999874
No 32
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.3e-55 Score=544.24 Aligned_cols=462 Identities=16% Similarity=0.195 Sum_probs=319.4
Q ss_pred hhHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 161 ITWGLLWSLFLKHKLR--LGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNM 238 (691)
Q Consensus 161 ~~~~~l~~~~~~~~~~--~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 238 (691)
..|+.++.|++..... +.+.+++.++..++.+..++.++...|......... ...+..++++.++..++.++..+.+
T Consensus 899 v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~-~~~~~i~~~l~~~~~i~~~~~~~~~ 977 (1622)
T PLN03130 899 VSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGP-LFYNLIYALLSFGQVLVTLLNSYWL 977 (1622)
T ss_pred cCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCch-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677776553322 222233333444555556666666555432111111 1122223333444445555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHH
Q 005561 239 NTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQL 318 (691)
Q Consensus 239 ~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L 318 (691)
...+.+...++|.++|++++++|++||+++++|++++|+++|++.+++.+...+. ..+..++.+++.++++++++|..
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~--~~~~~~~~~i~~~i~i~~~~~~~ 1055 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVN--MFLGQIFQLLSTFVLIGIVSTIS 1055 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999998876654 24556666677777777777743
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 319 APILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTF 398 (691)
Q Consensus 319 ~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~ 398 (691)
.++++.+++++..+..++.+..++..+......+.+.+++.|+++|++|||+|+.|+++.+++.+..+... +....
T Consensus 1056 ~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~----~~~~~ 1131 (1622)
T PLN03130 1056 LWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNI----RFTLV 1131 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHH----HHHHH
Confidence 33222222222223334444444444555566678888999999999999999999876655554444332 22222
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC-cC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 399 KSLNESLT-RIAIYISLLALYCLGGSKVKAGE-LS-----VGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINS 471 (691)
Q Consensus 399 ~~~~~~l~-~~~~~~~~~~il~~G~~lv~~g~-lt-----vG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~ 471 (691)
......+. .....+..+++++.+.+.+..+. .+ .+.+..++.|+..+..++..+...+..++..+++++|+.+
T Consensus 1132 ~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e 1211 (1622)
T PLN03130 1132 NMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGT 1211 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11112222233333444444332 11 2334444556677778888888888999999999999999
Q ss_pred HhcccccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCC
Q 005561 472 ILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRP 551 (691)
Q Consensus 472 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~ 551 (691)
+++.+++.+. ..++ . .+....+.+|.|+|+||+|+|++ +
T Consensus 1212 ~~~~~~E~~~------------~~~~----------~------------------~~~~~wp~~g~I~f~nVsf~Y~~-~ 1250 (1622)
T PLN03130 1212 YIDLPSEAPL------------VIEN----------N------------------RPPPGWPSSGSIKFEDVVLRYRP-E 1250 (1622)
T ss_pred HhCCCCcccc------------cccC----------C------------------CCCCCCCCCCcEEEEEEEEEeCC-C
Confidence 9876431100 0000 0 00000123578999999999963 2
Q ss_pred CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHH
Q 005561 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (691)
Q Consensus 552 ~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIr 631 (691)
.++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|++|||||+||+||||
T Consensus 1251 ~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130 1251 LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 632 ENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 632 eNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
|||.+++ +++|||+++||++|+++|||++||+||||++.
T Consensus 1331 eNLd~~~---~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vg 1369 (1622)
T PLN03130 1331 FNLDPFN---EHNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369 (1622)
T ss_pred HHhCcCC---CCCHHHHHHHHHHcCcHHHHHhCccccCcccc
Confidence 9999885 36999999999999999999999999999873
No 33
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.1e-54 Score=539.35 Aligned_cols=413 Identities=16% Similarity=0.219 Sum_probs=307.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Q 005561 240 TVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLA 319 (691)
Q Consensus 240 ~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~ 319 (691)
....+...++|.++|++++++|+.||+++++|++++|+++|++.+++.+...+.. .+..++.+++.++++++.+|.+.
T Consensus 1024 ~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~--~~~~~~~~i~~li~~~~~~p~~~ 1101 (1560)
T PTZ00243 1024 EAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLY--LLQCLFSICSSILVTSASQPFVL 1101 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667789999999999999999999999999999999999999998876652 45666677777788888888554
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 320 PILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFK 399 (691)
Q Consensus 320 lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~ 399 (691)
++++.+.++...+..++.+..+...+......+.+.+++.|+++|+++||+|+.|+.+.++|.+..+...+...+.....
T Consensus 1102 ~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~ 1181 (1560)
T PTZ00243 1102 VALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVAN 1181 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222223333445555555556666777888999999999999999999999999999988888777666554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005561 400 SLNESLTRIAIYISLLALYCLGGS--KVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTE 477 (691)
Q Consensus 400 ~~~~~l~~~~~~~~~~~il~~G~~--lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~ 477 (691)
.+......++..+..+++.+++.+ ....+.+++|.+..++.|+..+..++..+...+.+++.++.+++|+.++++..+
T Consensus 1182 ~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~ 1261 (1560)
T PTZ00243 1182 RWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVP 1261 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444444444333333333433 333456899999999999999999999999999999999999999999986432
Q ss_pred cchhhhcccchhhhcccchhhhhhhhhcCCCC-CcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccc
Q 005561 478 IDDALANGLERDIQQKHVEDENIKLFLFDGSN-GKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVIL 556 (691)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL 556 (691)
.++... .+...+..+... +.. ........ ....+....+.....|.|+|+||+|+|+++ .++||
T Consensus 1262 ~e~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~---~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL 1326 (1560)
T PTZ00243 1262 HEDMPE--LDEEVDALERRT---------GMAADVTGTVVI---EPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVL 1326 (1560)
T ss_pred cccccc--cccccccccccc---------cccccccccccc---ccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCcee
Confidence 111000 000000000000 000 00000000 000000000011135789999999999742 35699
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhc
Q 005561 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAY 636 (691)
Q Consensus 557 ~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~l 636 (691)
+|+||+|++||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.++||++|+||||||+||+|||||||+.
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 637 GLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 637 G~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
+ .+++||||++||++|+++|||+++|+||||.+
T Consensus 1407 ~---~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~v 1439 (1560)
T PTZ00243 1407 F---LEASSAEVWAALELVGLRERVASESEGIDSRV 1439 (1560)
T ss_pred c---cCCCHHHHHHHHHHCCChHHHhhCcccccccc
Confidence 5 24899999999999999999999999999987
No 34
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-53 Score=533.41 Aligned_cols=404 Identities=19% Similarity=0.250 Sum_probs=295.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHH
Q 005561 221 GLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRA 300 (691)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~ 300 (691)
+++.++..++.++..+.+.....+...++|.+++++++++|++||+++++|++++|+++|++.+++.+...+.. .+..
T Consensus 957 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~--~~~~ 1034 (1495)
T PLN03232 957 ALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNM--FMNQ 1034 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHH--HHHH
Confidence 33334444555556666777888999999999999999999999999999999999999999999988775542 4445
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 005561 301 LSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLM 380 (691)
Q Consensus 301 i~~~i~~li~l~~is~~L~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~ 380 (691)
+..+++.+++++.+++...++++.+.+++.+...++.+..++..+......+.+.+++.|+++|+++||+|+.|+++.++
T Consensus 1035 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~ 1114 (1495)
T PLN03232 1035 LWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKI 1114 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHH
Confidence 55566666666666653332222222222222233444444455555667778889999999999999999999886666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc----C-HHHHHHHHHHHHHHHHHHHHHHH
Q 005561 381 FGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVK-AGEL----S-VGIVASFIGYTFTLTFAVQGLVN 454 (691)
Q Consensus 381 ~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~-~g~l----t-vG~lva~~~~~~~l~~pl~~l~~ 454 (691)
+.+..+...+..........+ +......+..+++++.|.+.+. .|.+ . .+.+..++.|+..+..+++.+..
T Consensus 1115 ~~~~~~~~~~~~~~~~~~~~w---l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~ 1191 (1495)
T PLN03232 1115 NGKSMDNNIRFTLANTSSNRW---LTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLR 1191 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 655544433332221111111 1111112222333333444443 2432 1 23344467788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCC
Q 005561 455 TFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAW 534 (691)
Q Consensus 455 ~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (691)
.+.+++.++++++|+.++++.+++++. ..++ . .+....+.
T Consensus 1192 ~~~~~~~~~~s~eRi~e~~~~~~e~~~------------~~~~----------~------------------~~~~~~p~ 1231 (1495)
T PLN03232 1192 QASKAENSLNSVERVGNYIDLPSEATA------------IIEN----------N------------------RPVSGWPS 1231 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccc------------cccC----------C------------------CCCCCCCC
Confidence 999999999999999999876431100 0000 0 00000123
Q ss_pred cCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhh
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~ 614 (691)
.|.|+|+||+|+|++ +.++||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.++||+
T Consensus 1232 ~g~I~f~nVsf~Y~~-~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1232 RGSIKFEDVHLRYRP-GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred CCcEEEEEEEEEECC-CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHh
Confidence 578999999999963 2357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
+|+||||||+||+|||||||++++ +++|||+++|+++|+++|||+++|+||||++.
T Consensus 1311 ~i~iVpQdp~LF~gTIr~NL~~~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~ 1366 (1495)
T PLN03232 1311 VLSIIPQSPVLFSGTVRFNIDPFS---EHNDADLWEALERAHIKDVIDRNPFGLDAEVS 1366 (1495)
T ss_pred hcEEECCCCeeeCccHHHHcCCCC---CCCHHHHHHHHHHcCCHHHHHhCcCCCCceec
Confidence 999999999999999999999874 37999999999999999999999999999873
No 35
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-54 Score=513.16 Aligned_cols=403 Identities=23% Similarity=0.317 Sum_probs=327.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHH
Q 005561 221 GLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRA 300 (691)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~ 300 (691)
.++.++..++..+....+...+.+....+..++++++++.|++|||.+++|+|+||+++|++.+++.+...+. ..+..
T Consensus 865 ~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~--~~~~~ 942 (1381)
T KOG0054|consen 865 ALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLE--FFLQS 942 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHH--HHHHH
Confidence 3334444455555666667777889999999999999999999999999999999999999999999987765 35677
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 005561 301 LSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLM 380 (691)
Q Consensus 301 i~~~i~~li~l~~is~~L~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~ 380 (691)
++.+++.++++.+..|++.++++.+.++...+..+|.+..+.+.+.....++.+.+++.|+++|+.|||||+.|+++.++
T Consensus 943 ~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~ 1022 (1381)
T KOG0054|consen 943 LLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQE 1022 (1381)
T ss_pred HHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHH
Confidence 77888888888889998877666666666666677888888888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 381 FGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKA-GE-LSVGIVASFIGYTFTLTFAVQGLVNTFGD 458 (691)
Q Consensus 381 ~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~-g~-ltvG~lva~~~~~~~l~~pl~~l~~~~~~ 458 (691)
+.+..+...+...-.... +..+..-.-.++.+.++..+...+.. +. ++.|.+...++|+.+++..++++.....+
T Consensus 1023 ~~~~~D~~~~~~f~~~~a---~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~e 1099 (1381)
T KOG0054|consen 1023 NDELIDENSRAFFLSISA---NRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSE 1099 (1381)
T ss_pred HHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777665544332211 22222222223333333333333332 22 77899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcE
Q 005561 459 LRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDI 538 (691)
Q Consensus 459 l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I 538 (691)
++..+.++||+.++.+.+++.+ . +.+. ..+++..+.+|.|
T Consensus 1100 lEn~m~SVERv~eY~~~~~E~p-----~-------~~~~----------------------------~~pp~~WP~~G~I 1139 (1381)
T KOG0054|consen 1100 LENNMVSVERVLEYTDIPSEAP-----L-------EIEE----------------------------SRPPPSWPSKGEI 1139 (1381)
T ss_pred HHhcchhhhHHHHHhcCCCCCC-----C-------CCcC----------------------------CCCCCCCCCCCeE
Confidence 9999999999999988653210 0 0000 0001112347999
Q ss_pred EEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEE
Q 005561 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (691)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~ 618 (691)
+|+|++.+|.. +.++||+||||+|+|||||||||++|||||||++.|.|+.+|.+|+|.|||+||.++.+++||+++++
T Consensus 1140 ~f~~~~~RYrp-~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsI 1218 (1381)
T KOG0054|consen 1140 EFEDLSLRYRP-NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSI 1218 (1381)
T ss_pred EEEEeEEEeCC-CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCee
Confidence 99999999963 34689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 619 VNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 619 V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
+||||.||+||||.||. |.++.+|+|||+|+++++++++|+++|+|+|+++
T Consensus 1219 IPQdPvLFsGTvR~NLD---Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v 1269 (1381)
T KOG0054|consen 1219 IPQDPVLFSGTVRFNLD---PFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEV 1269 (1381)
T ss_pred eCCCCceecCccccccC---cccccCHHHHHHHHHHhChHHHHhhCCcCCCcee
Confidence 99999999999999998 6677999999999999999999999999999986
No 36
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.2e-52 Score=442.45 Aligned_cols=451 Identities=20% Similarity=0.260 Sum_probs=367.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 166 LWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGAR-PEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEK 244 (691)
Q Consensus 166 l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (691)
+...+..++..++...+++.+..++.+..|+++-++.|.+.... ..++..+..+.+.+|+++.++..++...+.+++.+
T Consensus 14 ~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~ 93 (580)
T COG4618 14 LAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGER 93 (580)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777777777888888999999999999999997544 34455555566777888888999999999999999
Q ss_pred HHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005561 245 VMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGV 324 (691)
Q Consensus 245 ~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~ 324 (691)
+...+..++|+...+.+..-- ..|+=.+-+ +|.++++.+++..-.. .+...=.+-+++.++|.++|+++++.++
T Consensus 94 lD~~L~~~v~~a~~~~~l~~~---~~g~~~Q~L-rDL~qvR~Fltg~g~~--A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ 167 (580)
T COG4618 94 LDRQLNGPVFAASFSAPLLRR---GSGDGLQPL-RDLDQVRQFLTGTGLT--AFFDAPWMPLYLAVIFLFHPWLGLIALA 167 (580)
T ss_pred HHHHhccHHHHHHHhhHHhhc---CCCccccch-hhHHHHHHHHcCCCcc--hhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887665443 334333333 8999999998753321 1111222456778889999999987655
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 325 LVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNES 404 (691)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 404 (691)
..++++.+.++-.+..++..++..+....-+.....+..|.++|++.|+.....++|.+.+.++...+.+..-.......
T Consensus 168 ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~ 247 (580)
T COG4618 168 GAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGA 247 (580)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55444444433333334444555555556666788899999999999999999999999999998888777766666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhc
Q 005561 405 LTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALAN 484 (691)
Q Consensus 405 l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~ 484 (691)
++...-++.+..++.+|+|++++|++|.|.+++-..++.+...|+......|.++..+..+.+|+.+++...+..+
T Consensus 248 ~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~---- 323 (580)
T COG4618 248 LSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA---- 323 (580)
T ss_pred HHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc----
Confidence 7778888888999999999999999999999999999999999999999999999999999999999997543110
Q ss_pred ccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEe
Q 005561 485 GLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLK 564 (691)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~ 564 (691)
...+.++.+|.+.+++++|.=|+ .++++|+|+||+++
T Consensus 324 ------------------------------------------~~m~LP~P~g~L~Ve~l~~~PPg-~~~pil~~isF~l~ 360 (580)
T COG4618 324 ------------------------------------------ERMPLPAPQGALSVERLTAAPPG-QKKPILKGISFALQ 360 (580)
T ss_pred ------------------------------------------CCCCCCCCCceeeEeeeeecCCC-CCCcceecceeEec
Confidence 00111223689999999997774 45799999999999
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHh-cCCCCCCC
Q 005561 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA-YGLPDENV 643 (691)
Q Consensus 565 ~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~-lG~p~~~~ 643 (691)
+||-+|||||||||||||+++|.|.+.|.+|.|++||-|+++++.+.+-++|||.|||..||+|||+|||+ |+ +++
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~---~~~ 437 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFG---EEA 437 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcc---ccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999996 44 247
Q ss_pred CHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 644 SKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 644 sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
++|.|.+|++.|+.||.|.+||+||||.+
T Consensus 438 d~~kIieAA~lAgvHelIl~lP~GYdT~i 466 (580)
T COG4618 438 DPEKVIEAARLAGVHELILRLPQGYDTRI 466 (580)
T ss_pred CHHHHHHHHHHcChHHHHHhCcCCccCcc
Confidence 89999999999999999999999999987
No 37
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.3e-50 Score=505.16 Aligned_cols=405 Identities=16% Similarity=0.226 Sum_probs=301.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 005561 230 FTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTIC 309 (691)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li 309 (691)
+.++..+.+.+...+...++|.++++++++.|+.||+++++|++++|+++|++.+++.+...+.. .+..++.+++.++
T Consensus 941 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~--~~~~~~~~i~~l~ 1018 (1490)
T TIGR01271 941 LGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFD--FIQLTLIVLGAIF 1018 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 33444555666778899999999999999999999999999999999999999999998876652 4566667778888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHH
Q 005561 310 ILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQ 389 (691)
Q Consensus 310 ~l~~is~~L~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~ 389 (691)
++++++|++++++++++++..++..++.+..+...+.....++.+.+++.|+++|+.+||+|++|+++.+++.+..+...
T Consensus 1019 ~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1019 VVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88888998765444433333334445555555555666677788999999999999999999999999999988887654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 390 QSGIKLGTFKSLNESLTRIAIYISL--LALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVE 467 (691)
Q Consensus 390 ~~~~k~~~~~~~~~~l~~~~~~~~~--~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~ 467 (691)
+..........+......++..+.. +++++++. ..++.|.+..++.|+..+..+++.+...+.+++..+.+++
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~e 1173 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVS 1173 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333222221111111111111111 11122222 2345566666677888888999999999999999999999
Q ss_pred HHHHHhcccccchhhhcccchhhhccc-chhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEE
Q 005561 468 RINSILSTTEIDDALANGLERDIQQKH-VEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFS 546 (691)
Q Consensus 468 Ri~~il~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~ 546 (691)
|+.++++.+++.+... +..... ..+. . ........+..+..|.|+|+||+|+
T Consensus 1174 Ri~~~~~~~~e~~~~~-----~~~~~~~~~~~---------~-------------~~~~~~~~~~wp~~g~I~f~nVs~~ 1226 (1490)
T TIGR01271 1174 RVFKFIDLPQEEPRPS-----GGGGKYQLSTV---------L-------------VIENPHAQKCWPSGGQMDVQGLTAK 1226 (1490)
T ss_pred HHHHHhcCCCcccccc-----ccccccccccc---------c-------------ccccCCCCCCCCCCCeEEEEEEEEE
Confidence 9999987643211000 000000 0000 0 0000000001123578999999999
Q ss_pred CCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcc
Q 005561 547 YPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF 626 (691)
Q Consensus 547 Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF 626 (691)
|++ +.+++|+|+||+|+|||+|||||+||||||||+++|+|+|+ ++|+|+|||+|+++++.+++|++|+||||||+||
T Consensus 1227 Y~~-~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF 1304 (1490)
T TIGR01271 1227 YTE-AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIF 1304 (1490)
T ss_pred eCC-CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccC
Confidence 974 34689999999999999999999999999999999999998 7999999999999999999999999999999999
Q ss_pred cccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 627 SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 627 ~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
+|||||||... .+++||++|+||+.++++++|+++|+||||++.
T Consensus 1305 ~GTIR~NLdp~---~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~ 1348 (1490)
T TIGR01271 1305 SGTFRKNLDPY---EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348 (1490)
T ss_pred ccCHHHHhCcc---cCCCHHHHHHHHHHCCCHHHHHhCccccccccc
Confidence 99999999754 347999999999999999999999999999884
No 38
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-51 Score=428.26 Aligned_cols=389 Identities=23% Similarity=0.348 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHHHHHHhH
Q 005561 238 MNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEV-IGTICILFNIAP 316 (691)
Q Consensus 238 ~~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~-i~~li~l~~is~ 316 (691)
+..+++.....+--+.|.|+.++++.|+.++.+|.+...+....+.++......+. ..+..++.+ +...++...++|
T Consensus 6 fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~--~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 6 FSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILF--NILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHH--HhhHHHHHHHHHHHHHHhhccc
Confidence 34455666677888999999999999999999999987777666666665554443 233334444 334445566899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 005561 317 QLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLG 396 (691)
Q Consensus 317 ~L~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~ 396 (691)
|.+.+.++++.+.+++.....-......++.+++.++.+....|++-+.+++|.|+.|+.+..+|.+..+.+.+...|..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 99877666555444433222222223345556677777788999999999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005561 397 TFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTT 476 (691)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~ 476 (691)
....+.+.....+.......+...++..+..|.+|+|+++....++.++..|++.++....++++++...|++.++++.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 55555544444555556666677788889999999999999999999999999999999999999999999999998764
Q ss_pred ccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccc
Q 005561 477 EIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVIL 556 (691)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL 556 (691)
... ... .+. .+..+ ...|.|.|+||+|.|. +.+++|
T Consensus 244 ~~v-----------~d~--pda----------------------------~~L~~-~~~g~v~F~~V~F~y~--~~r~iL 279 (497)
T COG5265 244 AEV-----------SDA--PDA----------------------------PPLWP-VRLGAVAFINVSFAYD--PRRPIL 279 (497)
T ss_pred hhh-----------ccC--CCC----------------------------ccccc-cccceEEEEEEEeecc--ccchhh
Confidence 210 000 000 00000 2357899999999996 467899
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhc
Q 005561 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAY 636 (691)
Q Consensus 557 ~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~l 636 (691)
+|+||++++|+++|+||+||+||||+++||.||||+++|.|.|||+|+++...+++|+.||+||||..|||+|+..||.|
T Consensus 280 ~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~y 359 (497)
T COG5265 280 NGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKY 359 (497)
T ss_pred cCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchhh
Q 005561 637 GLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSHF 674 (691)
Q Consensus 637 G~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~~ 674 (691)
|+|+ +++||+++|++.|++|+||+++|+||||.+.-
T Consensus 360 gr~~--at~eev~aaa~~aqi~~fi~~lP~gy~t~Vge 395 (497)
T COG5265 360 GRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGE 395 (497)
T ss_pred cCcc--ccHHHHHHHHHHhhhhHHHHhCchhhhcccch
Confidence 9985 79999999999999999999999999998854
No 39
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=5.5e-49 Score=450.15 Aligned_cols=438 Identities=15% Similarity=0.175 Sum_probs=320.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 165 LLWSLFLKHKLRLGLSVLTLIGCTTCTLS-MPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWE 243 (691)
Q Consensus 165 ~l~~~~~~~~~~~~~~ll~~l~~~~~~l~-~P~~~~~iiD~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (691)
.++.+++++++.+++.+++.++..++.+. .|++.+.++|.+.. ....+... +++.++..++.++..+.......
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 77 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT-SLLVLPEF----LGLLLLLMAVTLGSQLALTTLGH 77 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999888888888888888877 47788888886532 11111111 11111122344455566677788
Q ss_pred HHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005561 244 KVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILG 323 (691)
Q Consensus 244 ~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~ 323 (691)
++..++|.++|+|++++|+++|+++++|++++|+++|++.+...+.. +. ..+..++.++++++++++++|+++++++
T Consensus 78 ~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~--~~~~~~~~~i~~~~~l~~~~~~l~li~l 154 (547)
T PRK10522 78 HFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LP--ELVQGIILTLGSAAYLAWLSPKMLLVTA 154 (547)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999986653 33 2456666778888899999999998766
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 324 VLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGE---KRQMLMFGRQVLAYQQSGIKLGTFKS 400 (691)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E---~~~~~~~~~~~~~~~~~~~k~~~~~~ 400 (691)
+.+++..++..++.++..+..++..+..+++.+.+.|.++|+++++ ++.+ +.+.+++++..+++.+...+......
T Consensus 155 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (547)
T PRK10522 155 IWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHL 233 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHH
Confidence 6555555555555555555566667778888899999999999996 4443 34567788777777666655544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Q 005561 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (691)
Q Consensus 401 ~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~ 480 (691)
....+..+...+...+.+++++.. +..+.+.+..+..+...+..|+..+...+.+++.+..+.+|+.++++.++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~ 310 (547)
T PRK10522 234 SAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAE 310 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 322222222222122222223222 12234444444445555778999999999999999999999999865321000
Q ss_pred hhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCccccccee
Q 005561 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLN 560 (691)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Is 560 (691)
. .. ... ....+.|+|+||+|+|++ ++++|+|+|
T Consensus 311 -----------~---~~------------------------------~~~-~~~~~~i~~~~v~f~y~~--~~~~l~~i~ 343 (547)
T PRK10522 311 -----------F---PR------------------------------PQA-FPDWQTLELRNVTFAYQD--NGFSVGPIN 343 (547)
T ss_pred -----------c---cc------------------------------ccc-cCcCceEEEEEEEEEeCC--CCeEEecce
Confidence 0 00 000 001247999999999973 346999999
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCC
Q 005561 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640 (691)
Q Consensus 561 L~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~ 640 (691)
|+|++||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||+||+++|++|++|| + +
T Consensus 344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~- 418 (547)
T PRK10522 344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K- 418 (547)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-C-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 3 2
Q ss_pred CCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 641 ENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 641 ~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
+.++++++++++.+++++++.. |+|.
T Consensus 419 -~~~~~~~~~~~~~~~l~~~~~~-~~~~ 444 (547)
T PRK10522 419 -PANPALVEKWLERLKMAHKLEL-EDGR 444 (547)
T ss_pred -chHHHHHHHHHHHcCCchhhhc-cccC
Confidence 3688999999999999988763 5553
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.9e-49 Score=490.09 Aligned_cols=443 Identities=17% Similarity=0.197 Sum_probs=321.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 165 LLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKL-LSKVGLLYALEPIFTVIFVMNMNTVWE 243 (691)
Q Consensus 165 ~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (691)
.++.+++.+++.++..+++.++..++.++.|++++.++|.+...+....... ...+.+..++..+...-+.....+++.
T Consensus 291 l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 370 (1622)
T PLN03130 291 LLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGF 370 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677778888888888889999999999999998754332211111 111111111111111111222346677
Q ss_pred HHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005561 244 KVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILG 323 (691)
Q Consensus 244 ~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~ 323 (691)
++...++..+|+|+++++..++++.++|++++++++|++.+++.+.. +. ..+...+.+++++++++..-.+.+++.+
T Consensus 371 ~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~--~l~~~pl~ii~~~~lL~~~lg~~~l~g~ 447 (1622)
T PLN03130 371 RLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LH--TLWSAPFRIIIAMVLLYQQLGVASLIGS 447 (1622)
T ss_pred HHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999998743 22 2344444444444444432111111111
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 324 VLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNE 403 (691)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 403 (691)
+++++++.+..++.++..+..++..+..++..+.+.|.++|+++||.|++|+.+.+++++..++..+...+......+..
T Consensus 448 ~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~ 527 (1622)
T PLN03130 448 LMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNS 527 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222333444444555555666667777899999999999999999999998888776665555444444433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhh
Q 005561 404 SLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALA 483 (691)
Q Consensus 404 ~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~ 483 (691)
.+..... ..+.++++|++.+..|.+|+|.+++++.+...+..|+..++..+..+.++.++++|+.++++.++..+
T Consensus 528 ~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~--- 602 (1622)
T PLN03130 528 FILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVL--- 602 (1622)
T ss_pred HHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc---
Confidence 2221111 13455667889899999999999999999999999999999999999999999999999987542100
Q ss_pred cccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEE
Q 005561 484 NGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTL 563 (691)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I 563 (691)
. .+ + .. ....+.|+|+||+|+|++++++++|+|+||+|
T Consensus 603 ---------~--~~----------~-------------------~~--~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i 640 (1622)
T PLN03130 603 ---------L--PN----------P-------------------PL--EPGLPAISIKNGYFSWDSKAERPTLSNINLDV 640 (1622)
T ss_pred ---------c--cC----------C-------------------cc--cCCCCceEEEeeEEEccCCCCCceeeceeEEe
Confidence 0 00 0 00 00124699999999998544467999999999
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHhcCCCCC-CeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCC
Q 005561 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTG-GRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN 642 (691)
Q Consensus 564 ~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~-G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~ 642 (691)
++||++||||+||||||||+++|+|+|+|++ |+|.+ |++|+||+|+|+||+|||||||+||+|
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~--- 704 (1622)
T PLN03130 641 PVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSP--- 704 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cCeEEEEcCccccCCCCHHHHHhCCCc---
Confidence 9999999999999999999999999999999 99974 567999999999999999999999976
Q ss_pred CCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 643 VSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 643 ~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
.++|++++|++.|+++++|+.||+|+||++.
T Consensus 705 ~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IG 735 (1622)
T PLN03130 705 FDPERYERAIDVTALQHDLDLLPGGDLTEIG 735 (1622)
T ss_pred ccHHHHHHHHHHhCcHHHHHhCCCccccccc
Confidence 4799999999999999999999999999874
No 41
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.9e-49 Score=490.40 Aligned_cols=440 Identities=17% Similarity=0.187 Sum_probs=322.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 166 LWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWK-LLSKVGLLYALEPIFTVIFVMNMNTVWEK 244 (691)
Q Consensus 166 l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (691)
++.+++.+++.++.+.++.++..++.++.|++++.++|.+...+...... ....+.+..++..++...+.....+...+
T Consensus 292 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (1495)
T PLN03232 292 LRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFR 371 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777778888888999999999999999875333221111 11111111111111111122223566778
Q ss_pred HHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH--
Q 005561 245 VMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIL-- 322 (691)
Q Consensus 245 ~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil-- 322 (691)
+...++..+|+|+++++..++++.++|++++++++|++.+++.+. .+. ..+...+.+++++++++ +.+++..
T Consensus 372 ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~--~l~~~p~~ii~~~~~l~---~~lg~~~l~ 445 (1495)
T PLN03232 372 LRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLH--GLWSAPFRIIVSMVLLY---QQLGVASLF 445 (1495)
T ss_pred HHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHH---HHHhHHHHH
Confidence 888899999999999999999999999999999999999998863 222 12333333443333332 2233221
Q ss_pred HHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 323 GVLV-LTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSL 401 (691)
Q Consensus 323 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~ 401 (691)
++++ +++..+..++.++..+..++..+..++..+.+.|.++|+++||++++|+.+.+++++..++..+...+.....++
T Consensus 446 ~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~ 525 (1495)
T PLN03232 446 GSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAF 525 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 122222334445555556666667777888999999999999999999999999988777766666665555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh
Q 005561 402 NESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDA 481 (691)
Q Consensus 402 ~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~ 481 (691)
...+..... ..+.++++|++.+.+|.+|+|.+++++.+...+..|+..++..+..+.++.++++|+.++++.++..+
T Consensus 526 ~~~~~~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~- 602 (1495)
T PLN03232 526 NSFILNSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERIL- 602 (1495)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc-
Confidence 332222111 12334677889999999999999999999999999999999999999999999999999997542100
Q ss_pred hhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeE
Q 005561 482 LANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNL 561 (691)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL 561 (691)
.. .. +. ....+.|+|+||+|+|++++++++|+|+||
T Consensus 603 ----------~~--~~------------------------------~~--~~~~~~I~~~~vsF~y~~~~~~~vL~~inl 638 (1495)
T PLN03232 603 ----------AQ--NP------------------------------PL--QPGAPAISIKNGYFSWDSKTSKPTLSDINL 638 (1495)
T ss_pred ----------cc--cC------------------------------Cc--CCCCCcEEEEeeEEEcCCCCCCceeeeeEE
Confidence 00 00 00 001246999999999985445689999999
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCC
Q 005561 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE 641 (691)
Q Consensus 562 ~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~ 641 (691)
+|++||++||||+||||||||+++|+|+|+|++|.+. .+|++|+||+|+|+||+|||||||+||+|
T Consensus 639 ~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-- 704 (1495)
T PLN03232 639 EIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSVAYVPQVSWIFNATVRENILFGSD-- 704 (1495)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcEEEEcCccccccccHHHHhhcCCc--
Confidence 9999999999999999999999999999999999773 46889999999999999999999999975
Q ss_pred CCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 642 NVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 642 ~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
+++|++++|++.|+++++++.||+|+||++.
T Consensus 705 -~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IG 735 (1495)
T PLN03232 705 -FESERYWRAIDVTALQHDLDLLPGRDLTEIG 735 (1495)
T ss_pred -cCHHHHHHHHHHhCCHHHHHhCCCCCCceec
Confidence 5899999999999999999999999999863
No 42
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=6.4e-48 Score=448.14 Aligned_cols=474 Identities=15% Similarity=0.150 Sum_probs=349.8
Q ss_pred HHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH----HHHHHHHHHHHHHH
Q 005561 163 WGLLWSLFLKHKL-----RLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSK----VGLLYALEPIFTVI 233 (691)
Q Consensus 163 ~~~l~~~~~~~~~-----~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~l~~----~~~~~~~~~~~~~~ 233 (691)
++.++++++++++ .+++.+++.++.+++.+..|++.+.++|.++..+...+...+.. ++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778876 46666777778888999999999999999875543323221221 12222333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 005561 234 FVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFN 313 (691)
Q Consensus 234 ~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~ 313 (691)
.......+..++..+++.+.|++....+..+|++ ++|++.+|+++|++.+.+.+...+. .++..++.++++++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~--~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYS--NLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4444555667778888888888888888888887 7899999999999999999887765 356677777777777775
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHH
Q 005561 314 -IAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSG 392 (691)
Q Consensus 314 -is~~L~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~ 392 (691)
++|.+++++++.+++..++..++.++..+..++..+..+++.+.+.|.++|+++||+|+.|+.+.+++++..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999987766666666666677777777788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-hc----CCcCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHH
Q 005561 393 IKLGTFKSLNESLTRIAIYI--SLLALYCLGGSKV-KA----GELSVGIVAS-FIGY---TFTLTFAVQGLVNTFGDLRG 461 (691)
Q Consensus 393 ~k~~~~~~~~~~l~~~~~~~--~~~~il~~G~~lv-~~----g~ltvG~lva-~~~~---~~~l~~pl~~l~~~~~~l~~ 461 (691)
.+..+..+....+..++... ..+++++.|+..+ .+ |.+|+|.+++ |+.+ +..+..|+..+.+.+.++++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777776665432 3333333444333 22 7899998776 5554 56779999999999999999
Q ss_pred HHHHHHHHHHHhcccccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEE
Q 005561 462 TFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLE 541 (691)
Q Consensus 462 ~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~ 541 (691)
+.++.+|+.++++.++..+.. ..+ .....+.++ +... .. ..... +.........+.|+++
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~--~~~---~~~~~~~~~-------~~~~-~~------~~~~~-~~~~~~~~~~~~i~~~ 455 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSG--NFK---RPRVEEIES-------GREG-GR------NSNLV-PGRGIVEYQDNGIKFE 455 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--ccc---ccccccccc-------cccc-cc------ccccc-ccccccccCCCeEEEE
Confidence 999999999999754211000 000 000000000 0000 00 00000 0000000123579999
Q ss_pred eeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEec
Q 005561 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQ 621 (691)
Q Consensus 542 nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Q 621 (691)
||+|+|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+|+|++|+|.+|+ |++|+||+|
T Consensus 456 nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q 522 (659)
T TIGR00954 456 NIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQ 522 (659)
T ss_pred eeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECC
Confidence 99999973 34699999999999999999999999999999999999999999999874 678999999
Q ss_pred cCCcccccHHHHHhcCCC-----CCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 622 EPVLFSVSVGENIAYGLP-----DENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 622 d~~LF~gTIreNI~lG~p-----~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
+|++|++|++|||.++.. +.+.++++++++++.+++++++.+ |.||||...
T Consensus 523 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~ 578 (659)
T TIGR00954 523 RPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD 578 (659)
T ss_pred CCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc
Confidence 999999999999999742 123578999999999999999988 999999754
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.1e-43 Score=444.29 Aligned_cols=445 Identities=15% Similarity=0.125 Sum_probs=318.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 165 LLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEP-L-WKLLSKVGLLYALEPIFTVIFVMNMNTVW 242 (691)
Q Consensus 165 ~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~-l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (691)
.++.+++.+++.++..++..++..++.++.|++++.++|.+...+... . +.++..+++++++..++...+.+...+++
T Consensus 307 l~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1522)
T TIGR00957 307 LFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSG 386 (1522)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777888888888888999999999999999875332211 1 11222222333333333333334456678
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005561 243 EKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIL 322 (691)
Q Consensus 243 ~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil 322 (691)
.++...++..+|+|+++++..++++.++|++++++++|++.+.+... .+. ..+..++.+++++++++..-.+.+++.
T Consensus 387 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~--~~~~~~~~i~~~~~ll~~~~g~~~l~~ 463 (1522)
T TIGR00957 387 MRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLAT-YIN--MIWSAPLQVILALYFLWLNLGPSVLAG 463 (1522)
T ss_pred HHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88999999999999999999999999999999999999999987653 222 233444444444444333222222221
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 323 GVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLN 402 (691)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 402 (691)
+++++++..+..++.++..+..++..+..++..+.+.|.++||++||.+++|+.+.+++++..++..+...+......+.
T Consensus 464 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~ 543 (1522)
T TIGR00957 464 VAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVG 543 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333344444555555666666777789999999999999999999999999887766555544444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Q 005561 403 ESLTRIAIYISLLALYCLGGSKVKA--GELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (691)
Q Consensus 403 ~~l~~~~~~~~~~~il~~G~~lv~~--g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~ 480 (691)
........ ..+.++.++.+.+.. +.++.+.+++.+.+...+..|+..++..+..++++.++++|+.++++.++.++
T Consensus 544 ~~~~~~~~--~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~ 621 (1522)
T TIGR00957 544 TFTWVCTP--FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEP 621 (1522)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 22111111 112223345566553 56899999988888889999999999999999999999999999997543110
Q ss_pred hhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCccccccee
Q 005561 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLN 560 (691)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~Is 560 (691)
. ..+.. ... ....+.|+++|++|+|++ .++++|+|+|
T Consensus 622 ~------------~~~~~-----------------------------~~~-~~~~~~i~~~~~~~~~~~-~~~~~l~~is 658 (1522)
T TIGR00957 622 D------------SIERR-----------------------------TIK-PGEGNSITVHNATFTWAR-DLPPTLNGIT 658 (1522)
T ss_pred c------------ccccc-----------------------------ccC-CCCCCcEEEEEeEEEcCC-CCCceeeeeE
Confidence 0 00000 000 001236999999999974 2357999999
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCC
Q 005561 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640 (691)
Q Consensus 561 L~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~ 640 (691)
|+|++||+++|||+||||||||+++|+|+++|++|+|.+|| +|+||+|+|++|++||||||.+|++
T Consensus 659 l~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~- 724 (1522)
T TIGR00957 659 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA- 724 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc-
Confidence 99999999999999999999999999999999999999998 4999999999999999999999965
Q ss_pred CCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 641 ENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 641 ~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
.++++..++++.+++.++++.+|+|+||.+.
T Consensus 725 --~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig 755 (1522)
T TIGR00957 725 --LNEKYYQQVLEACALLPDLEILPSGDRTEIG 755 (1522)
T ss_pred --cCHHHHHHHHHHhCCHHHHHhcCCCCCceec
Confidence 4678888999999999999999999999864
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.5e-41 Score=424.05 Aligned_cols=462 Identities=14% Similarity=0.181 Sum_probs=315.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 165 LLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEP---LWKLLSKVGLLYALEPIFTVIFVMNMNTV 241 (691)
Q Consensus 165 ~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~---l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 241 (691)
.++.+++.+++.+++..+..++..++.++.|++++.+++.+...+... .+.++..+++++++..++.....+.....
T Consensus 70 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 149 (1490)
T TIGR01271 70 LLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHL 149 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777778888899999999999999873222111 11222222333333334444444455667
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005561 242 WEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPI 321 (691)
Q Consensus 242 ~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~li 321 (691)
+.++...++..+|+|+++++...+++.++|++++++++|++.+.+.+.... ..+...+.+++++++++.+..+.+++
T Consensus 150 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~---~~~~~pi~i~~~~~lL~~~~G~~~l~ 226 (1490)
T TIGR01271 150 GMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAH---FVWIAPLQVILLMGLIWELLEVNGFC 226 (1490)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888999999999999999999999999999999998765332 23445555666666666655555544
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 322 LGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSL 401 (691)
Q Consensus 322 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~ 401 (691)
.+++++++..+..++.++..+..++..+...+..+.+.|.++||++||.+++|+.+.+++++..++..+...+......+
T Consensus 227 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~ 306 (1490)
T TIGR01271 227 GLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYF 306 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555566666666677778999999999999999999998888877666555555554444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccccch
Q 005561 402 NESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAV-QGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (691)
Q Consensus 402 ~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl-~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~ 480 (691)
...+..... ..+.++.+++|.+..+ ++++.+++++++...+..|+ +.++..+..+.++.++++||.++++.++.++
T Consensus 307 ~~~~~~~~~--~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~ 383 (1490)
T TIGR01271 307 YSSAFFFSG--FFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT 383 (1490)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 322222222 2233445566666644 68999999999988888887 5799999999999999999999997643211
Q ss_pred hhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhc--------cccccccCCCCCcCcEEEEeeEEECCCCCC
Q 005561 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSH--------LKSANSVCSFAWSGDICLEDVYFSYPLRPD 552 (691)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~ 552 (691)
... ........- .+........ .............+.++++|++|.+
T Consensus 384 ~~~-----~~~~~~i~~---------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----- 438 (1490)
T TIGR01271 384 LEY-----NLTTTEVEM---------------VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYV----- 438 (1490)
T ss_pred ccc-----cCCCCceEE---------------ecceEecCCcccccccccccccccccccccccccccccccccc-----
Confidence 000 000000000 0000000000 0000000000011234455555432
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHH
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIre 632 (691)
.++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|+|.+|| +|+||+|+|++|++||+|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHH
Confidence 3589999999999999999999999999999999999999999999998 499999999999999999
Q ss_pred HHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 633 NIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 633 NI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
||.||.+ .++++..++++.++++++++.+|+|++|.+.
T Consensus 506 NI~~g~~---~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg 543 (1490)
T TIGR01271 506 NIIFGLS---YDEYRYTSVIKACQLEEDIALFPEKDKTVLG 543 (1490)
T ss_pred HHHhccc---cchHHHHHHHHHHhHHHHHHhcccccccccc
Confidence 9999964 4566777888888999999999999998763
No 45
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=8.7e-41 Score=417.42 Aligned_cols=493 Identities=15% Similarity=0.138 Sum_probs=335.3
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 160 LITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPL--WKLLSKVGLLYALEPIFTVIFVMN 237 (691)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~ 237 (691)
|..+..++..++.+++.++..++..++..++.++.|++++.+++.+...+.... +.++..+++..++..++...+.+.
T Consensus 229 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~ 308 (1560)
T PTZ00243 229 PKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQSVCLHRFYYI 308 (1560)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777778888888888899999999999999999999987633222211 111222233333444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhc--ccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 005561 238 MNTVWEKVMSIVKAQIFRRVLIQKAEFFD--RYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIA 315 (691)
Q Consensus 238 ~~~~~~~~~~~LR~~lf~~ll~lp~~~f~--~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is 315 (691)
..+.+.++...++..+|+|+++++...+. +.++|+++|.+++|++.+.+++.... .++...+.+++++++++.+.
T Consensus 309 ~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~---~l~~~Pl~li~~~~lL~~~l 385 (1560)
T PTZ00243 309 SIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCM---YLWSSPMVLLLSILLLSRLV 385 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 66777888889999999999999998886 56899999999999999999875432 24556666777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Q 005561 316 PQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKL 395 (691)
Q Consensus 316 ~~L~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~ 395 (691)
.+.+++.++++++...+..++.++.....++..+...+..+.+.|.++||++||.+++|+.+.+++.+..++..+...+.
T Consensus 386 G~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~ 465 (1560)
T PTZ00243 386 GWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDV 465 (1560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665533333344444445555555555555666666677899999999999999999999999988766655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005561 396 GTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILST 475 (691)
Q Consensus 396 ~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~ 475 (691)
.....+...+......+. .++.++++.+..|.+|++.+++++.+...+..|+..++..+..+.++.++++||.++++.
T Consensus 466 ~~~~~~~~~~~~~~p~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~ 543 (1560)
T PTZ00243 466 QLARVATSFVNNATPTLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLEC 543 (1560)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444444333332222222 223456777888999999999999999999999999999999999999999999999976
Q ss_pred cccchhhhcccchhh-h-cccchhhhhhhhhcCCCCCc--ccccc------hh----hhhcc-ccccccCCCCCcCcEEE
Q 005561 476 TEIDDALANGLERDI-Q-QKHVEDENIKLFLFDGSNGK--HQHLN------MH----YMSHL-KSANSVCSFAWSGDICL 540 (691)
Q Consensus 476 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~--~~~~~------~~----~~~~~-~~~~~~~~~~~~g~I~f 540 (691)
++.+........... . ..............+..... +...+ .. ..... ............+.+.+
T Consensus 544 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1560)
T PTZ00243 544 DNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVV 623 (1560)
T ss_pred ccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc
Confidence 542110000000000 0 00000000000000000000 00000 00 00000 00000000011245778
Q ss_pred EeeEEECCCC-------------------------------------CCcccccceeEEEeCCCEEEEECCCCCcHHHHH
Q 005561 541 EDVYFSYPLR-------------------------------------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIV 583 (691)
Q Consensus 541 ~nVsF~Y~~~-------------------------------------~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl 583 (691)
+|++|+++.. .+.++|+|+||+|++||+++|+|++|||||||+
T Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL 703 (1560)
T PTZ00243 624 EDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLL 703 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHH
Confidence 8877765310 124589999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhc
Q 005561 584 QLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 584 ~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
++|+|+++|++|+|.++ ++|+||+|+|++|++||+|||.++.+ .+++++.++++.++++++++.
T Consensus 704 ~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~---~~~~~~~~~~~~~~l~~~l~~ 767 (1560)
T PTZ00243 704 QSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE---EDAARLADAVRVSQLEADLAQ 767 (1560)
T ss_pred HHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh---hhHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999863 46999999999999999999999864 356778899999999999999
Q ss_pred CCcccccchh
Q 005561 664 LPQVWLSKSH 673 (691)
Q Consensus 664 LP~GydT~~~ 673 (691)
+|+|++|.+.
T Consensus 768 l~~g~~t~i~ 777 (1560)
T PTZ00243 768 LGGGLETEIG 777 (1560)
T ss_pred hhccchHHhc
Confidence 9999998754
No 46
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-40 Score=397.60 Aligned_cols=443 Identities=19% Similarity=0.175 Sum_probs=321.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 166 LWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWK---LLSKVGLLYALEPIFTVIFVMNMNTVW 242 (691)
Q Consensus 166 l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (691)
++..++.+++.+++..++..+......+.|.++..+++.+.... ...+. +...+.+..++..++..-+.+...+++
T Consensus 192 ~~al~~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~-~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g 270 (1381)
T KOG0054|consen 192 LRALLRTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKR-LPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVG 270 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCC-cccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhh
Confidence 34445556667766666666666668889999999999875442 11221 112222222233333333444456777
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005561 243 EKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPIL 322 (691)
Q Consensus 243 ~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil 322 (691)
.|+...+-..+|+|.++++-..-.....|+++|.++.|++++.+..... . ..+...+.++.++.+++..-.+-+++-
T Consensus 271 ~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~-h--~~w~~Plqi~~~l~lLy~~LG~sa~~G 347 (1381)
T KOG0054|consen 271 MRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFL-H--LLWSAPLQIILALYLLYGLLGPSALAG 347 (1381)
T ss_pred hhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 7888888999999999999998888999999999999999999987532 1 345566666666665554322222222
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 323 GVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLN 402 (691)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 402 (691)
++++++++.+..+..++..+..++..+...+-.+..+|.++||++||.|++|+.+.++.++.-++-.+.-.|.....++.
T Consensus 348 ~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~ 427 (1381)
T KOG0054|consen 348 VAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALN 427 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334444455555555555555555556678999999999999999999987777766555555544555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh
Q 005561 403 ESLTRIAIYISLLALYCLGGSK-VKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDA 481 (691)
Q Consensus 403 ~~l~~~~~~~~~~~il~~G~~l-v~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~ 481 (691)
..+......+..++. ++++. ...+.++....++.+++...+..|+..++..+..+.++.++++|+.+++..++.++.
T Consensus 428 ~~~~~~~p~lv~~~t--F~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~ 505 (1381)
T KOG0054|consen 428 SFLNFFSPVLVSVVT--FVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPD 505 (1381)
T ss_pred HHHHHHHHHHHHHHH--HHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 443333333332222 34443 456678888888999999999999999999999999999999999999987543211
Q ss_pred hhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeE
Q 005561 482 LANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNL 561 (691)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL 561 (691)
. ... .+....+..|+++|.+|+|+.....+.|+||||
T Consensus 506 ~------------~~~-------------------------------~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~ 542 (1381)
T KOG0054|consen 506 S------------VER-------------------------------SPDEAGENAIEIKNGSFSWDSESPEPTLKDINF 542 (1381)
T ss_pred c------------ccc-------------------------------CCCCCCCceEEEeeeeEecCCCCCcccccceeE
Confidence 0 000 000011236999999999975334569999999
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCC
Q 005561 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE 641 (691)
Q Consensus 562 ~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~ 641 (691)
+|++|+.+||||+.|||||+|+..|+|..+..+|+|.++|. ++||||+||||||||||||.||.|
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~-- 607 (1381)
T KOG0054|consen 543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSP-- 607 (1381)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCcc--
Confidence 99999999999999999999999999999999999999996 999999999999999999999987
Q ss_pred CCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 642 NVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 642 ~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
.+++.-.++++.++++..++.||.|-.|++.
T Consensus 608 -~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIG 638 (1381)
T KOG0054|consen 608 -YDEERYDKVIKACALKKDLEILPFGDLTEIG 638 (1381)
T ss_pred -ccHHHHHHHHHHccCHhHHhhcCCCCcceec
Confidence 5789999999999999999999999999874
No 47
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-32 Score=282.79 Aligned_cols=430 Identities=18% Similarity=0.216 Sum_probs=276.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 166 LWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKV 245 (691)
Q Consensus 166 l~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (691)
+..++|++++.++..+.+.+++...+... +.-+-+.+...+......+ ...+++..+..+.+.+.......+++..
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~l---La~in~al~e~~~~~~~~l-~~f~~llllf~~ss~is~lg~t~~gq~~ 79 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGL---LAFINQALIETADTSLLVL-PEFLGLLLLFMVSSLISQLGLTTLGQHF 79 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcccceeeH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888887777776665544432 2222233332222211111 1111111222223344455567788999
Q ss_pred HHHHHHHHHHHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005561 246 MSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVL 325 (691)
Q Consensus 246 ~~~LR~~lf~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~ 325 (691)
..++|.++.++++..|+.-+++.+++.++.++++|+..|.-.+. .++ ...++...++++++.++++|+++.++.++.
T Consensus 80 I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s-~lp--~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 80 IYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFS-RLP--ELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHh-hhH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999998873333 222 245566667888999999999987664443
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 326 VLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKR--QMLMFGRQVLAYQQSGIKLGTFKSLNE 403 (691)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~--~~~~~~~~~~~~~~~~~k~~~~~~~~~ 403 (691)
+++..+...+..++..+.+...++...++.+..+..++|-++++...--.+ ..+++....+.+++.......+.....
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~ 236 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAV 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHHHHHHH
Confidence 333333333333333444555566666777788888999999987742222 112222222222221111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhh
Q 005561 404 SLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALA 483 (691)
Q Consensus 404 ~l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~ 483 (691)
.+.+++.+..+.+++|+.... +--+.-...++......+-.|+.+....+..+-.+.++.+||.++-..++..+.
T Consensus 237 ~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~-- 311 (546)
T COG4615 237 NWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF-- 311 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC--
Confidence 122222222222333332222 222222333344444556789999999999999999999999987543221100
Q ss_pred cccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEE
Q 005561 484 NGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTL 563 (691)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I 563 (691)
+.+ ...+.|+ .||++||.|+|++ ...-+..||++|
T Consensus 312 ------------------------~~~------------------q~~p~~~-~lelrnvrfay~~--~~FhvgPiNl~i 346 (546)
T COG4615 312 ------------------------PRP------------------QAFPDWK-TLELRNVRFAYQD--NAFHVGPINLTI 346 (546)
T ss_pred ------------------------CCC------------------CcCCccc-ceeeeeeeeccCc--ccceecceeeEE
Confidence 000 0001133 5999999999984 335578999999
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCC
Q 005561 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV 643 (691)
Q Consensus 564 ~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~ 643 (691)
++||.|-|+|.+||||||+++||.|+|+|++|+|++||.+++.-+++++|+-++-|.-|-+||+.++ | ++..+
T Consensus 347 krGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~-~e~~a 419 (546)
T COG4615 347 KRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------G-PEGKA 419 (546)
T ss_pred ecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------C-CccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999753 3 34446
Q ss_pred CHHHHHHHHHHcCcHH
Q 005561 644 SKDDIIKAAKAANAHD 659 (691)
Q Consensus 644 sdeeI~~Al~~A~l~d 659 (691)
+.+.+.+-++.-.+..
T Consensus 420 s~q~i~~~LqrLel~~ 435 (546)
T COG4615 420 SPQLIEKWLQRLELAH 435 (546)
T ss_pred ChHHHHHHHHHHHHhh
Confidence 7777777666655543
No 48
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.97 E-value=4.4e-27 Score=261.45 Aligned_cols=423 Identities=14% Similarity=0.207 Sum_probs=283.5
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcccChh
Q 005561 192 LSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVG 271 (691)
Q Consensus 192 l~~P~~~~~iiD~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G 271 (691)
+......+.+.|.+...+.+.+|..+..+.++..+...+.....+....+..+...-+-..+.++.++.. .||.-...|
T Consensus 64 v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~ 142 (604)
T COG4178 64 VLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAG 142 (604)
T ss_pred eeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcc
Confidence 3334445677777765555555554443333333333333334444444555566667777888888777 444333333
Q ss_pred ------HHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHH---------------HHHHHHHHHHHH
Q 005561 272 ------ELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQL---------------APILGVLVLTVS 330 (691)
Q Consensus 272 ------~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L---------------~lil~~~~~~~~ 330 (691)
..=+|+..|+...-+...+... .++.+++.++...++++.++..+ ...+++.++...
T Consensus 143 ~~~~~dNpDQRi~eDi~~~t~~t~~l~~--g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s 220 (604)
T COG4178 143 GIGLIDNPDQRIQEDIRNFTETTLDLSF--GLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISAS 220 (604)
T ss_pred cccCCCChHHhHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHH
Confidence 2347999998777665443332 24455555555555555443322 111222222233
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 331 VLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAI 410 (691)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~ 410 (691)
++..++.|...++..+..+..+.+...+...-++.+.|-.++.|+.+.++.++......+.-.+..........+...-.
T Consensus 221 ~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~ 300 (604)
T COG4178 221 LLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYG 300 (604)
T ss_pred HHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhh
Confidence 34445666666666666666777777778888999999999999999988877776655544443333222222223333
Q ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchhh
Q 005561 411 YISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDI 490 (691)
Q Consensus 411 ~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~ 490 (691)
.++.++-+.+++-....|+++.|.++.......++...++.+.+.+..+..-.+.+.|+.++.+.-+..+ .+.+
T Consensus 301 ~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~-----~~~~- 374 (604)
T COG4178 301 WLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQ-----MDTE- 374 (604)
T ss_pred HHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc-----Cccc-
Confidence 3444555566777788999999999999988899999999999999999999999999999875321000 0000
Q ss_pred hcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEE
Q 005561 491 QQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTA 570 (691)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vA 570 (691)
++ .+. + . ........ ...|+|+|++..-|+ +...++++|++|++||.+-
T Consensus 375 --~~-~~~--------~--~---------------~~~~~~~~-~~~i~~~nl~l~~p~--~~~ll~~l~~~v~~G~~ll 423 (604)
T COG4178 375 --KP-ART--------G--R---------------RIDFDDNA-DHGITLENLSLRTPD--GQTLLSELNFEVRPGERLL 423 (604)
T ss_pred --cc-Ccc--------c--c---------------cccccccc-cceeEEeeeeEECCC--CCeeeccceeeeCCCCEEE
Confidence 00 000 0 0 00000011 457999999999885 3478999999999999999
Q ss_pred EECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHH
Q 005561 571 LVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIK 650 (691)
Q Consensus 571 IVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~ 650 (691)
|.|+||||||||++.|+|+++-.+|+|-+-.. ..+-|+||.|++=.||+||=|+|-++.++++|+|+.+
T Consensus 424 I~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~ 492 (604)
T COG4178 424 ITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492 (604)
T ss_pred EECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHH
Confidence 99999999999999999999999999876521 2488999999999999999999976544589999999
Q ss_pred HHHHcCcHHHHhcCC
Q 005561 651 AAKAANAHDFIISLP 665 (691)
Q Consensus 651 Al~~A~l~dfI~~LP 665 (691)
++.++++.+++++|.
T Consensus 493 vL~~vgL~~L~~rl~ 507 (604)
T COG4178 493 VLHKVGLGDLAERLD 507 (604)
T ss_pred HHHHcCcHHHHHHHh
Confidence 999999999999874
No 49
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.94 E-value=8.2e-24 Score=217.07 Aligned_cols=270 Identities=20% Similarity=0.371 Sum_probs=217.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 178 GLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEP---LWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIF 254 (691)
Q Consensus 178 ~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~---l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf 254 (691)
++++++.++..++.+..|++++.++|.+..++... .+.....+++...+...+.....+...+...++..++|.+++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888889999999999865443321 111111112222222333333344456778899999999999
Q ss_pred HHHHcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005561 255 RRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVA 334 (691)
Q Consensus 255 ~~ll~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~~~~~~ 334 (691)
+|++++|.++|+++++|++++|+++|++.+++.+...+.. .+..+..+++.+++++.++|++++++++..++..++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQ--IISSIISIIFSLILLFFISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccc--cccccchhhhhhhcccccccccccccchhhhhhHhhhh
Confidence 9999999999999999999999999999999999876653 45666777888889999999999887666666666666
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 335 VYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISL 414 (691)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~ 414 (691)
.+.++.++..++..+..++..+.+.|.++|+++||+||.|+++.+++++..++..+...+..........+......+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777888888889999999999999999999999999999999999999999988888888888888888888
Q ss_pred HHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHH
Q 005561 415 LALYCLGGSK-VKAGELSVGIVASFIGYTFTLTFAV 449 (691)
Q Consensus 415 ~~il~~G~~l-v~~g~ltvG~lva~~~~~~~l~~pl 449 (691)
++++++|+++ +.+|.+++|+++++..+...+..|+
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 8899999999 9999999999999999999988875
No 50
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=6.6e-27 Score=244.08 Aligned_cols=132 Identities=21% Similarity=0.384 Sum_probs=121.7
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhc
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~ 615 (691)
|.|+|+||+|+|++ ++.++|+|+||+|++||+++|||+||||||||+++|+|+++ ++|+|++||+++..++..++|+.
T Consensus 1 g~i~~~nls~~~~~-~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTE-GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999973 24569999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 616 VSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 616 Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
|+||+|++.+|++||+||+.... ..++++++++++.+++++++.++|+||||.+
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~ 132 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVL 132 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc---CCCHHHHHHHHHHcCCHHHHHhCccccccee
Confidence 99999999999999999997432 2578999999999999999999999999975
No 51
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.92 E-value=7.3e-25 Score=222.19 Aligned_cols=134 Identities=27% Similarity=0.438 Sum_probs=122.8
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhc
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~ 615 (691)
|.|+++|++|+|+.. +.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999732 3479999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 616 VSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 616 Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
++|++|++.+|++|++|||.+... .+++++.++++..++.+++..+|.|++|..+
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~ 134 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE---YSDEELWQALERVGLKEFVESLPGGLDTVVE 134 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC---CCHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 999999999999999999987532 4678899999999999999999999998754
No 52
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=4.9e-22 Score=215.24 Aligned_cols=436 Identities=16% Similarity=0.189 Sum_probs=245.3
Q ss_pred HHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcccChhHH----HHHHHh
Q 005561 204 VLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGEL----SGLLTS 279 (691)
Q Consensus 204 ~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~~f~~~~~G~l----~srlt~ 279 (691)
.++..+...++..+...+.++.+...+..+..+..+-+.-+...++-.-++++.++-.. ||.-.+.++. =+|+++
T Consensus 112 al~~kd~~~F~~~~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~-yYkis~~d~ridNPDQrltq 190 (659)
T KOG0060|consen 112 ALINKDAELFKRLLFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFT-YYKLSNLDDRIDNPDQRLTQ 190 (659)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccce-EEEecccccccCChHHHHhH
Confidence 34444544455544433333333333333333333333334444444444554444322 2222222221 368889
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 005561 280 DLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLT-VSVLVAVYKRSTVPVFKAHGLAQASIADCV 358 (691)
Q Consensus 280 Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (691)
|++..-+.+.+.... ...+.+.++.+..-++....++.+..+..-++ ..++...+.+-..+...++.+..+++.-.-
T Consensus 191 Dv~kf~~~l~sl~s~--l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h 268 (659)
T KOG0060|consen 191 DVEKFCRQLSSLYSN--LLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKH 268 (659)
T ss_pred HHHHHHHHHHHHHHh--hhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhhe
Confidence 988777666544331 23334444444445555544555443232222 222222333333334444455555555556
Q ss_pred HHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcCHHH
Q 005561 359 TETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKV----KAGELSVGI 434 (691)
Q Consensus 359 ~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv----~~g~ltvG~ 434 (691)
.+...|.+.|--|+.++.+..+.....+...+...+...+......+..+.-+++.++-+.+-+.-+ ..+.++..+
T Consensus 269 ~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aE 348 (659)
T KOG0060|consen 269 SRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAE 348 (659)
T ss_pred eeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHH
Confidence 6778899999999999888877666666655555444433333333333333333222221111111 235677777
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhcccchhhhcccchhhhhhhhhcCCCCC
Q 005561 435 VASFIGY----TFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNG 510 (691)
Q Consensus 435 lva~~~~----~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (691)
+...+.. +..+...+..+.....++.+..+-..||.++.+.-. +......++..+.++..+...+
T Consensus 349 L~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~--d~~~~~~~~~~~~~~~~E~~~~--------- 417 (659)
T KOG0060|consen 349 LSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLD--DLSSGSQECTMEEEELGEAEWG--------- 417 (659)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHH--HhccCCcchhhhhhhhhhhhhc---------
Confidence 7655432 334455666666666677777777888888765321 1100011110000000000000
Q ss_pred cccccchhhhhccccccccCCCCCcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcC
Q 005561 511 KHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY 590 (691)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly 590 (691)
...++.. ......+..|+|++|+++=|++ +..+.+|+||+|+.|+.+-|.||||||||+|++.|.|++
T Consensus 418 ----------l~~~~G~-~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW 485 (659)
T KOG0060|consen 418 ----------LSLPPGS-GKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW 485 (659)
T ss_pred ----------cCCCCCC-cccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc
Confidence 0000000 0001123569999999999864 445678899999999999999999999999999999999
Q ss_pred CCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcC-----CCCCCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 591 EPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYG-----LPDENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 591 ~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG-----~p~~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
+-.+|.+.--...-. +.+=||||.|+.=.||+||-+.|- .....++|++|.+.++.+++.+.++. -
T Consensus 486 p~~~G~l~k~~~~~~--------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ 556 (659)
T KOG0060|consen 486 PSTGGKLTKPTDGGP--------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-E 556 (659)
T ss_pred ccCCCeEEecccCCC--------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-h
Confidence 999999984332110 448899999999999999999884 11135799999999999999886554 5
Q ss_pred cccccchhh
Q 005561 666 QVWLSKSHF 674 (691)
Q Consensus 666 ~GydT~~~~ 674 (691)
+|+|+++-.
T Consensus 557 ggld~~~~~ 565 (659)
T KOG0060|consen 557 GGLDQQVDW 565 (659)
T ss_pred CCCCchhhc
Confidence 899976643
No 53
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=3.8e-24 Score=218.14 Aligned_cols=132 Identities=39% Similarity=0.710 Sum_probs=120.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
+|+++|++|+|++ ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5899999999962 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 617 SIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 617 a~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
+|++|++.+|++|++||+.++.++ ..++++.++++..++.++++.+|+|+++..
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 133 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPN--ATDEEVIEAAKEAGAHDFIMKLPNGYDTVL 133 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCC--CCHHHHHHHHHHhChHHHHHhCcccccCHh
Confidence 999999999999999999988553 456788899999999999999999998753
No 54
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.91 E-value=9.4e-25 Score=215.33 Aligned_cols=126 Identities=32% Similarity=0.502 Sum_probs=112.3
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+|+|||+.|. +..+++|+||+|++||.+.+||||||||||++|+|.|+++|++|+|+|||.++++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCcc-cccHHHHHhcCCC-----CCCCCHHHHHHHHHHcCcH--HHHhcCCcc
Q 005561 618 IVNQEPVLF-SVSVGENIAYGLP-----DENVSKDDIIKAAKAANAH--DFIISLPQV 667 (691)
Q Consensus 618 ~V~Qd~~LF-~gTIreNI~lG~p-----~~~~sdeeI~~Al~~A~l~--dfI~~LP~G 667 (691)
||-|..-|| +-||.|||++- | +.+.-++++.+.++.++++ +|..+.|.-
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~e 135 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHE 135 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchh
Confidence 999999999 57999999863 1 1112456688889999995 588888863
No 55
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.91 E-value=5.2e-24 Score=221.03 Aligned_cols=136 Identities=24% Similarity=0.364 Sum_probs=123.0
Q ss_pred CcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhh
Q 005561 534 WSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA 613 (691)
Q Consensus 534 ~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR 613 (691)
..|.|+++|++++|+.. +..+|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999742 34699999999999999999999999999999999999999999999999999999988999
Q ss_pred hceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 614 RVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
+.|+||+|++.+|++|++||+.+.. ...+++++++++.+++++++..+|.|++|...
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~ 151 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC---KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT 151 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC---CCCHHHHHHHHHHhCcHHHHhhcccccCcEec
Confidence 9999999999999999999997642 13567888999999999999999999998653
No 56
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.91 E-value=5.4e-24 Score=218.22 Aligned_cols=132 Identities=44% Similarity=0.669 Sum_probs=119.1
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+++|+.+ +.++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999632 356999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 618 ~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
|++|++.+|+.|++|||.++.+. .+.+++.++++..++.+++..+|.|+++..
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 132 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPG--MSMERVIEAAKLAGAHDFISELPEGYDTIV 132 (237)
T ss_pred EEcCCchhccchHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhCcccccchh
Confidence 99999999999999999987542 456788888999999999999999988753
No 57
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.91 E-value=7.3e-24 Score=215.68 Aligned_cols=137 Identities=42% Similarity=0.729 Sum_probs=120.8
Q ss_pred CcCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhh
Q 005561 534 WSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA 613 (691)
Q Consensus 534 ~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR 613 (691)
..+.|+++|++++|+++.+.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999743234699999999999999999999999999999999999999999999999999888888888
Q ss_pred hceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 614 RVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
+.++||+|++.+|++|++||+.++... .+.+++.+.++..+++++++.+|.|+++..
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~ 144 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQS--CSFECVKEAAQKAHAHSFISELASGYDTEV 144 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCC--CCHHHHHHHHHHcCcHHHHHhccccccchh
Confidence 999999999999999999999987542 345667777778889999999998887653
No 58
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.91 E-value=1.6e-24 Score=205.15 Aligned_cols=129 Identities=28% Similarity=0.364 Sum_probs=114.1
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH---Hhhh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWAR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~---~lR~ 614 (691)
|+|+||+.+|++ ++++|+||||+|++||++-++|||||||||++|||++.-.|+.|+|.++|.|+..+..+ -+|+
T Consensus 2 I~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 899999999985 36799999999999999999999999999999999999999999999999999888744 6899
Q ss_pred ceEEEeccCCcc-cccHHHHHhcC-----CCCCCCCHHHHHHHHHHcCcHHHHhcCCcccc
Q 005561 615 VVSIVNQEPVLF-SVSVGENIAYG-----LPDENVSKDDIIKAAKAANAHDFIISLPQVWL 669 (691)
Q Consensus 615 ~Ia~V~Qd~~LF-~gTIreNI~lG-----~p~~~~sdeeI~~Al~~A~l~dfI~~LP~Gyd 669 (691)
+||+|+||-.|. +-||.||++|. .+.+ .-.+++.++++.+|+.+-...||.-+-
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~-~i~~rV~~~L~~VgL~~k~~~lP~~LS 139 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-EIRRRVSEVLDLVGLKHKARALPSQLS 139 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHH-HHHHHHHHHHHHhccchhhhcCccccC
Confidence 999999999987 56999999984 3321 234678999999999999999997543
No 59
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1e-23 Score=215.93 Aligned_cols=131 Identities=39% Similarity=0.683 Sum_probs=120.1
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|++ +..+|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 246899999999999999999999999999999999999999999999999999998889999999
Q ss_pred EEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 618 ~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
|++|++.+|++|++||+.++.++ .+++++.++++.+++.+++..+|.|++|..
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 131 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIV 131 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchh
Confidence 99999999999999999998543 467788889999999999999999999854
No 60
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.90 E-value=1.5e-23 Score=215.10 Aligned_cols=133 Identities=50% Similarity=0.823 Sum_probs=118.6
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|+++.|++..+.++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997432346999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 618 ~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
|++|++.+|+.|++||+.++.+. .+.+++.+.++..++.+++..+|.|+++..
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 133 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD--ATDEEVEEAAKKANIHDFIMSLPDGYDTLV 133 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC--CCHHHHHHHHHHcChHHHHHhhccccceee
Confidence 99999999999999999997543 356778888888899999999999988753
No 61
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.90 E-value=2.5e-23 Score=210.84 Aligned_cols=133 Identities=33% Similarity=0.599 Sum_probs=120.2
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
+|+++|++++|+++ +.++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999632 24699999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 617 SIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 617 a~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
+|++|++.+|..|++||+.++.+. .+++++.++++..++.+.+..+|.|++|..
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 134 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLDLQI 134 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCC--CCHHHHHHHHHHcCcHHHHHhcccccccee
Confidence 999999999999999999987543 356788899999999999999999999764
No 62
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.1e-23 Score=221.52 Aligned_cols=128 Identities=29% Similarity=0.449 Sum_probs=114.3
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+..|++ .. +++|+||+|+.||.++|||||||||||++++|+||.+|++|+|.|||.++.++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~--~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGS--FE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCC--ce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 5999999999963 22 899999999999999999999999999999999999999999999999999999865 899
Q ss_pred EEEeccCCcccc-cHHHHHhcCCCCC----CCCHHHHHHHHHHcCcHHHHhcCCcccc
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGLPDE----NVSKDDIIKAAKAANAHDFIISLPQVWL 669 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~p~~----~~sdeeI~~Al~~A~l~dfI~~LP~Gyd 669 (691)
|+|+|+.-||.- ||+|||.|+.... +.-+++|.++++..++.+.+++.|..+-
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LS 135 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLS 135 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCC
Confidence 999999999965 9999999985322 1246789999999999999999987654
No 63
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=8.3e-24 Score=203.87 Aligned_cols=125 Identities=31% Similarity=0.442 Sum_probs=110.6
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCC-----CeEEECCccCCCC--C
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG-----GRITVGGEDLRTF--D 608 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~-----G~I~IdG~di~~i--~ 608 (691)
..++++|++|.|. +..+|+|||++|++++.+|++|||||||||+++.+.|+.+... |+|.+||+||.+. +
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3699999999996 3569999999999999999999999999999999999999987 9999999999875 7
Q ss_pred hHHhhhceEEEeccCCcccccHHHHHhcCCCCC----CCCHHHHHHHHHHcCcHHHHhc
Q 005561 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE----NVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 609 ~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~----~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
.-++|++||+|+|.|.-|..||+||++||-.-. ..=||-++++++.|.++|-+.+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD 141 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD 141 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH
Confidence 889999999999999999999999999983211 1234668999999999988753
No 64
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.2e-23 Score=213.25 Aligned_cols=133 Identities=39% Similarity=0.715 Sum_probs=119.6
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|+++ +.++++|+||++++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999732 236999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 618 ~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
|++|++.+|+.|++||+.++.++ .+.+++.++++..+++++++.+|.|+++..+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 133 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPG--ATREEVEEAARAANAHEFIMELPEGYDTVIG 133 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCC--CCHHHHHHHHHHcCcHHHHHhcccCcceeec
Confidence 99999999999999999998543 4667888889999999999999999887543
No 65
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.8e-23 Score=223.73 Aligned_cols=124 Identities=29% Similarity=0.450 Sum_probs=104.6
Q ss_pred cCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCC--CC
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLR--TF 607 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~--~i 607 (691)
.+.|+|+|++|+|++ ...++|+|+||+|++||++||||+||||||||+++|+|+++ |++|+|.|||+++. .+
T Consensus 78 ~~~i~~~nls~~y~~-~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMN-RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 467999999999973 23579999999999999999999999999999999999997 57999999999997 44
Q ss_pred ChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHH-----HHHHHHHcCcHH
Q 005561 608 DKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDD-----IIKAAKAANAHD 659 (691)
Q Consensus 608 ~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdee-----I~~Al~~A~l~d 659 (691)
+...+|+.++||+|+|++|++||+|||.|+......++++ +.++++.+++++
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 213 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD 213 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc
Confidence 5678899999999999999999999999874322234443 466778887744
No 66
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.89 E-value=4.8e-23 Score=206.31 Aligned_cols=120 Identities=29% Similarity=0.445 Sum_probs=107.2
Q ss_pred EEEEeeEEECCCCCC--cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhc
Q 005561 538 ICLEDVYFSYPLRPD--VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~--~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~ 615 (691)
|+++||+++|+++.+ .++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999974211 3699999999999999999999999999999999999999999999999 5
Q ss_pred eEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccchh
Q 005561 616 VSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 616 Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~~ 673 (691)
|+||+|++.+|++|++||+.++.. .+++++.++++.+++.+++..+|.|++|...
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 122 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP---FDEERYEKVIKACALEPDLEILPDGDLTEIG 122 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC---cCHHHHHHHHHHcCcHHHHHhccCcccceec
Confidence 999999999999999999999743 3567788999999999999999999887653
No 67
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=2.5e-23 Score=201.47 Aligned_cols=128 Identities=30% Similarity=0.458 Sum_probs=109.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCC-CCChHHhhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR-TFDKSEWARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~-~i~~~~lR~~ 615 (691)
-|+++||+.+|. +..||+|||++|++||.++|+||||||||||+++|.||-+|++|+|.+||.++. +.+...+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 389999999996 357999999999999999999999999999999999999999999999997663 3378899999
Q ss_pred eEEEeccCCcc-cccHHHHHhcC------CCCCCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 616 VSIVNQEPVLF-SVSVGENIAYG------LPDENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 616 Ia~V~Qd~~LF-~gTIreNI~lG------~p~~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
+|+|+|+..|| +-|+.|||+++ .+.+ --++.-.+.++++|+.|-....|..+
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~-eA~~~A~~lL~~VGL~~ka~~yP~qL 137 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKA-EAREKALELLEKVGLADKADAYPAQL 137 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHH-HHHHHHHHHHHHcCchhhhhhCcccc
Confidence 99999999999 57999999986 1111 12344567788999999998888754
No 68
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.89 E-value=4.1e-23 Score=218.40 Aligned_cols=127 Identities=28% Similarity=0.522 Sum_probs=112.6
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhc
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~ 615 (691)
..|+++||+-+|. +..+++|+||+|++||.++++|||||||||++++|+||.+|++|+|.+||+|+.+++.+ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3699999999996 45799999999999999999999999999999999999999999999999999998864 789
Q ss_pred eEEEeccCCcc-cccHHHHHhcCCC-CCCCC----HHHHHHHHHHcCcHHHHhcCCcc
Q 005561 616 VSIVNQEPVLF-SVSVGENIAYGLP-DENVS----KDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 616 Ia~V~Qd~~LF-~gTIreNI~lG~p-~~~~s----deeI~~Al~~A~l~dfI~~LP~G 667 (691)
|++|+|+.-|| +-||+|||.||.. ..... ++.+.++++.+++.++-.+.|.-
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~q 136 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQ 136 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhh
Confidence 99999999999 5799999999954 11122 24789999999999998887764
No 69
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=8.2e-23 Score=214.51 Aligned_cols=132 Identities=24% Similarity=0.443 Sum_probs=112.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999732224699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEeccC--CcccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCccc
Q 005561 617 SIVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 617 a~V~Qd~--~LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
+||+|++ .+++.||+|||.++......+ ++++.++++..++.++....|..+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARL 141 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 9999998 467789999999874221122 356889999999999888777533
No 70
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.89 E-value=5e-23 Score=208.06 Aligned_cols=129 Identities=30% Similarity=0.429 Sum_probs=108.6
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH---Hhhh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWAR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~---~lR~ 614 (691)
|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 24699999999999999999999999999999999999999999999999998876543 4788
Q ss_pred ceEEEeccCCccc-ccHHHHHhcCCC----CCCCCHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 615 VVSIVNQEPVLFS-VSVGENIAYGLP----DENVSKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~-gTIreNI~lG~p----~~~~sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
.++||+|++.+|. .|++||+.++.. .....++++.++++..++.++..+.|..
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQ 138 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 9999999999987 599999987521 1112356788999999998887766643
No 71
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=7.6e-23 Score=203.83 Aligned_cols=123 Identities=27% Similarity=0.405 Sum_probs=108.0
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.+++++|+.+|+. ..||+|+||+|++||+|+||||||||||||+|+++|+.+|++|+|.++|.++..-. ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4899999999973 57999999999999999999999999999999999999999999999999885443 569
Q ss_pred EEEeccCCccc-ccHHHHHhcCCCCC----CCCHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGLPDE----NVSKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~p~~----~~sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
+||+|++.||. -||+||+.+|.... .-.++.+.++++.+|+.+|-...|.-
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~q 130 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQ 130 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccc
Confidence 99999999997 79999999985421 11345789999999999999998874
No 72
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.3e-22 Score=205.44 Aligned_cols=128 Identities=29% Similarity=0.509 Sum_probs=114.6
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCC-CCChHHhhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR-TFDKSEWARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~-~i~~~~lR~~ 615 (691)
-|+++|++|+|+++ .++|+|+|++|++||.++|+|+||||||||+++|.|++.|++|+|.+||.++. +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999854 57999999999999999999999999999999999999999999999999998 5889999999
Q ss_pred eEEEeccC--CcccccHHHHHhcCCCCCCCCHHH----HHHHHHHcCcHHHHhcCCc
Q 005561 616 VSIVNQEP--VLFSVSVGENIAYGLPDENVSKDD----IIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 616 Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~sdee----I~~Al~~A~l~dfI~~LP~ 666 (691)
+|||.|+| ++|..||.|.++||-.+...+.+| +.+|++.++++++-++.|.
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~ 137 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF 137 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc
Confidence 99999999 999999999999996554455544 7788999999887666554
No 73
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.88 E-value=1.8e-22 Score=204.36 Aligned_cols=129 Identities=23% Similarity=0.332 Sum_probs=113.1
Q ss_pred EEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh----HHhhh
Q 005561 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK----SEWAR 614 (691)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~----~~lR~ 614 (691)
.+.|+.|+|+. +.++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 46789999973 3569999999999999999999999999999999999999999999999998876642 34577
Q ss_pred ceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
.++|++|++.+|+.|++|||.++.+ .++++..++++..++.+++..+|.|++|..
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 134 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP---FNKQRYKAVTDACSLQPDIDLLPFGDQTEI 134 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc---CCHHHHHHHHHHhCcHHHHHhCcCccccCc
Confidence 8999999999999999999998743 356677889999999999999999988754
No 74
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.88 E-value=1.5e-22 Score=211.89 Aligned_cols=130 Identities=33% Similarity=0.478 Sum_probs=112.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++||+|+|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++++.|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999962 34699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEeccC--CcccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCccc
Q 005561 617 SIVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 617 a~V~Qd~--~LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
+||+|++ .+|..|++|||.++......+ ++++.++++..++.++..+.|..+
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 139 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhC
Confidence 9999998 688999999999873211122 356788999999998887777543
No 75
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.88 E-value=1e-22 Score=206.64 Aligned_cols=124 Identities=24% Similarity=0.443 Sum_probs=110.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.++++|++|+|+ ++++|+|+||+|++||.++|+||+|||||||+|.|+|+..|.+|+|++||.++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccC-CcccccHHHHHhcCCCC--------CCCCHHHHHHHHHHcCcHHHHhc
Q 005561 617 SIVNQEP-VLFSVSVGENIAYGLPD--------ENVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 617 a~V~Qd~-~LF~gTIreNI~lG~p~--------~~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
|||||++ .-|.-||+|=+.+|+-. .+.+++.+.+|++..++.++.++
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r 134 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR 134 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC
Confidence 9999995 56788999999999631 11233468899999999998765
No 76
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.88 E-value=9.5e-23 Score=204.34 Aligned_cols=125 Identities=28% Similarity=0.457 Sum_probs=106.2
Q ss_pred EEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEE
Q 005561 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (691)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~ 618 (691)
+++||+++|++ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.. ..+|+.|+|
T Consensus 1 ~~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 36899999963 1469999999999999999999999999999999999999999999999998754 467789999
Q ss_pred EeccC--CcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 619 VNQEP--VLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 619 V~Qd~--~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
|+|++ .+|+.|++||+.++.+.....++++.++++..++.++..+.|..+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 127 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL 127 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhC
Confidence 99998 478899999999864322223467899999999998887776544
No 77
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1.6e-22 Score=202.95 Aligned_cols=126 Identities=29% Similarity=0.440 Sum_probs=108.7
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhc
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~ 615 (691)
+.|+++|++++|++. ..++++|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+..++|+.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 579999999999732 2469999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 616 VSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 616 Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
|+||+|++.+|++|++|||.+... .+++++.++++ ++..+..|..|-
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~---~~~~~~~~~l~---~~~~~~~LS~G~ 130 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE---YSDEEIYGALR---VSEGGLNLSQGQ 130 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC---CCHHHHHHHhh---ccCCCCcCCHHH
Confidence 999999999999999999987532 46677777776 344455555553
No 78
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.88 E-value=1.8e-22 Score=216.61 Aligned_cols=130 Identities=28% Similarity=0.386 Sum_probs=109.8
Q ss_pred EEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH---hh
Q 005561 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---WA 613 (691)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~---lR 613 (691)
|+++||+++|+++. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+++.++ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred hceEEEeccCCccc-ccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~-gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
++|+||+|++.+|. .|++||+.++...... .++++.++++.+++.++..+.|..
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~ 140 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSN 140 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh
Confidence 89999999999995 7999999875321111 235678899999998887766653
No 79
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=2.3e-22 Score=204.30 Aligned_cols=130 Identities=28% Similarity=0.412 Sum_probs=111.3
Q ss_pred EEEEeeEEECCCC--CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH---Hh
Q 005561 538 ICLEDVYFSYPLR--PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EW 612 (691)
Q Consensus 538 I~f~nVsF~Y~~~--~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~---~l 612 (691)
|+|+||++.|+.. ....+|+|+||+|++||..+|||.||+|||||++++.++-+|++|+|.+||.|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999852 124689999999999999999999999999999999999999999999999988888754 56
Q ss_pred hhceEEEeccCCccc-ccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 613 ARVVSIVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 613 R~~Ia~V~Qd~~LF~-gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
|++||+|+|+..|++ -||.|||+|-..-+.. -++++.+.++.+|+.|.-.+-|.-
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~q 141 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQ 141 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchh
Confidence 789999999999998 8999999984321122 345688899999999988877753
No 80
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=3.5e-22 Score=205.33 Aligned_cols=124 Identities=30% Similarity=0.503 Sum_probs=107.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+..++|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcH-HHHhc
Q 005561 617 SIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAH-DFIIS 663 (691)
Q Consensus 617 a~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~-dfI~~ 663 (691)
+|++|++.+|+.|++||+.++.......++++.++++..++. ++..+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 127 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATR 127 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhC
Confidence 999999999999999999986321112356788888888884 45444
No 81
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.87 E-value=2.4e-22 Score=204.68 Aligned_cols=124 Identities=33% Similarity=0.502 Sum_probs=106.6
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcC-----CCCCCeEEECCccCCCCC--hH
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY-----EPTGGRITVGGEDLRTFD--KS 610 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly-----~p~~G~I~IdG~di~~i~--~~ 610 (691)
|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999963 46999999999999999999999999999999999999 999999999999998877 56
Q ss_pred HhhhceEEEeccCCcccccHHHHHhcCCCCCCC-----CHHHHHHHHHHcCcHHHHhcC
Q 005561 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-----SKDDIIKAAKAANAHDFIISL 664 (691)
Q Consensus 611 ~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~-----sdeeI~~Al~~A~l~dfI~~L 664 (691)
.+|++++||+|++.+|+.|++||+.++...... .++++.++++..++.+.+.+.
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhcc
Confidence 788999999999999999999999875321111 245678899999998776554
No 82
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=1.8e-22 Score=206.63 Aligned_cols=126 Identities=26% Similarity=0.469 Sum_probs=106.1
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh---HHhhh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK---SEWAR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~---~~lR~ 614 (691)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999962 469999999999999999999999999999999999999999999999999988764 56889
Q ss_pred ceEEEeccCCcccc-cHHHHHhcCCC-CCCCC----HHHHHHHHHHcCcHHHHhcCCc
Q 005561 615 VVSIVNQEPVLFSV-SVGENIAYGLP-DENVS----KDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~g-TIreNI~lG~p-~~~~s----deeI~~Al~~A~l~dfI~~LP~ 666 (691)
.|+||+|++.+|.+ |++||+.++.. ....+ ++++.++++..++.++..+.|.
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA 135 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChh
Confidence 99999999999986 99999987621 11122 3457788899998777665443
No 83
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.8e-22 Score=208.64 Aligned_cols=132 Identities=30% Similarity=0.466 Sum_probs=113.2
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++||+|+|++. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999632 34699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEeccC--CcccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCcccc
Q 005561 617 SIVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQVWL 669 (691)
Q Consensus 617 a~V~Qd~--~LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~Gyd 669 (691)
+||+|++ .+++.||+|||.++......+ ++++.++++..++.+++...|..+-
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS 142 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLS 142 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCC
Confidence 9999998 577889999999863211122 3558889999999999988876443
No 84
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.2e-22 Score=211.80 Aligned_cols=128 Identities=23% Similarity=0.341 Sum_probs=103.9
Q ss_pred cEEEEeeEEECCCCC--CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC-------
Q 005561 537 DICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF------- 607 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~--~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i------- 607 (691)
.|+++||+|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997321 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------ChHHhhhceEEEeccC--CcccccHHHHHhcCCCCCCCCHH----HHHHHHHHcCcH-HHHhcC
Q 005561 608 ---------DKSEWARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSKD----DIIKAAKAANAH-DFIISL 664 (691)
Q Consensus 608 ---------~~~~lR~~Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~sde----eI~~Al~~A~l~-dfI~~L 664 (691)
+...+|+.|+||+|++ ++|++||+|||.++......+.+ ++.++++..++. ++..+-
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence 3567899999999998 79999999999987321112333 355667777774 454443
No 85
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.7e-22 Score=207.98 Aligned_cols=131 Identities=30% Similarity=0.515 Sum_probs=110.6
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++|++++|++ .+.++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 7 ~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4999999999963 235799999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEeccC--CcccccHHHHHhcCCCCCCCCH----HHHHHHHHHcCcHHHHhcCCccc
Q 005561 617 SIVNQEP--VLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 617 a~V~Qd~--~LF~gTIreNI~lG~p~~~~sd----eeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
+||+|++ .+++.|++|||.++......+. +.+.++++..++.++..+.|..+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 143 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNL 143 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccC
Confidence 9999998 4667899999998632111222 34677889999988887766533
No 86
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=2.6e-22 Score=197.38 Aligned_cols=127 Identities=29% Similarity=0.472 Sum_probs=106.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH---Hhh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWA 613 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~---~lR 613 (691)
-|++++|+|+|. ++.|++|+||+|++||.++|+|+||||||||++++.|+..|++|+|+|+|.|+.+++.+ .+|
T Consensus 8 ~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 599999999996 45799999999999999999999999999999999999999999999999999999965 568
Q ss_pred hceEEEeccCCcccc-cHHHHHhcCC-CCCCCCHHHH----HHHHHHcCcHHH-HhcCCc
Q 005561 614 RVVSIVNQEPVLFSV-SVGENIAYGL-PDENVSKDDI----IKAAKAANAHDF-IISLPQ 666 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~g-TIreNI~lG~-p~~~~sdeeI----~~Al~~A~l~df-I~~LP~ 666 (691)
+++|+++|+.-||+. ||+||+.|-. ...+.+++++ ..-++.+|+..- .+.+|.
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps 144 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPS 144 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCch
Confidence 999999999999976 9999999831 1122444444 445677888766 444553
No 87
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.87 E-value=3.9e-22 Score=201.82 Aligned_cols=126 Identities=25% Similarity=0.357 Sum_probs=104.6
Q ss_pred EEEEeeEEECCCCCC-cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 538 ICLEDVYFSYPLRPD-VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~-~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
|+++||+++|++... .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974211 169999999999999999999999999999999999999999999999999875 456788999
Q ss_pred EEEeccCCcccc-cHHHHHhcCCCCCC----CCHHHHHHHHHHcCcHHHHhcC
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGLPDEN----VSKDDIIKAAKAANAHDFIISL 664 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~p~~~----~sdeeI~~Al~~A~l~dfI~~L 664 (691)
+||+|++.+|.+ |++||+.+...... ..++++.++++..++.+...+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 133 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRR 133 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhh
Confidence 999999999985 99999976421101 1245678899999997765543
No 88
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.87 E-value=3.2e-22 Score=202.39 Aligned_cols=128 Identities=27% Similarity=0.405 Sum_probs=105.4
Q ss_pred EEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH----h
Q 005561 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE----W 612 (691)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~----l 612 (691)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996311 146999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hhceEEEeccCCcccc-cHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCC
Q 005561 613 ARVVSIVNQEPVLFSV-SVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 613 R~~Ia~V~Qd~~LF~g-TIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP 665 (691)
+++++||+|++.+|.+ |++||+.++...... .++++.++++..+++++..+.|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 138 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP 138 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh
Confidence 6789999999999986 999999886321111 2456888999999877665544
No 89
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.87 E-value=3.3e-22 Score=200.89 Aligned_cols=122 Identities=20% Similarity=0.345 Sum_probs=104.9
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+++|+ +.++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+. ..+|+.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 47899999996 24699999999999999999999999999999999999999999999999988765 56788999
Q ss_pred EEeccCCcc-cccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcC
Q 005561 618 IVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISL 664 (691)
Q Consensus 618 ~V~Qd~~LF-~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~L 664 (691)
||+|++.+| +.|++||+.++......+++++.++++..++.+...+.
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 123 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK 123 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh
Confidence 999999888 57999999875321123577889999999997766553
No 90
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.2e-22 Score=207.67 Aligned_cols=132 Identities=26% Similarity=0.490 Sum_probs=111.0
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++||+|+|+.....++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999742234699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEeccC--CcccccHHHHHhcCCCCCCCCH----HHHHHHHHHcCcHHHHhcCCccc
Q 005561 617 SIVNQEP--VLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 617 a~V~Qd~--~LF~gTIreNI~lG~p~~~~sd----eeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
+||+|++ .+++.|+.|||.++......++ +++.++++.+++.++....|..+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 141 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARL 141 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 9999998 4778999999987632111233 34678889999988877655433
No 91
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=4.8e-22 Score=203.28 Aligned_cols=130 Identities=21% Similarity=0.319 Sum_probs=107.0
Q ss_pred cEEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH---h
Q 005561 537 DICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---W 612 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~---l 612 (691)
-|+++||+|+|+++. ..++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||+++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997321 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-hceEEEeccCCcccc-cHHHHHhcCCC----CCCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 613 A-RVVSIVNQEPVLFSV-SVGENIAYGLP----DENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 613 R-~~Ia~V~Qd~~LF~g-TIreNI~lG~p----~~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
| +.|+||+|++.+|.+ |++||+.++.. +....++++.++++..++.++..+.|.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 3 679999999999975 99999987311 111124568889999999776655443
No 92
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=5.7e-22 Score=209.01 Aligned_cols=129 Identities=29% Similarity=0.431 Sum_probs=105.4
Q ss_pred EEEEeeEEECCCCC--CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCC----CChHH
Q 005561 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT----FDKSE 611 (691)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~----i~~~~ 611 (691)
|+++||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997321 1259999999999999999999999999999999999999999999999999863 34567
Q ss_pred hhhceEEEeccC--CcccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcH-HHHhcCCc
Q 005561 612 WARVVSIVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAH-DFIISLPQ 666 (691)
Q Consensus 612 lR~~Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~-dfI~~LP~ 666 (691)
+|+.|+||+|+| .+|+.||.|||.|+......+ ++++.++++..++. ++..+.|.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF 143 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc
Confidence 899999999998 899999999999873211122 24567788888884 55554443
No 93
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=5.4e-22 Score=194.62 Aligned_cols=124 Identities=27% Similarity=0.385 Sum_probs=108.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC---hHHhh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD---KSEWA 613 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~---~~~lR 613 (691)
.|+++||+-.||+ +..+|+||||+|++||+|||+|+||||||||++.|.|+.+|++|+|+++|.++.... ++.||
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 467999999999999999999999999999999999999999999999999998888 66788
Q ss_pred hceEEEeccCCccc-ccHHHHHhcCCCCC------------CCCHHHHHHHHHHcCcHHHHh
Q 005561 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDE------------NVSKDDIIKAAKAANAHDFII 662 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~-gTIreNI~lG~p~~------------~~sdeeI~~Al~~A~l~dfI~ 662 (691)
++|||++|++-|-. -|+.+|+..|+-.. ..+.++..+|++.+|+.|...
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~ 142 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY 142 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH
Confidence 99999999999986 58999998875321 123456788999999988653
No 94
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.87 E-value=5.6e-22 Score=200.02 Aligned_cols=129 Identities=30% Similarity=0.434 Sum_probs=107.5
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh---HHhhh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK---SEWAR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~---~~lR~ 614 (691)
|+++||+++|++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 468999999963 2469999999999999999999999999999999999999999999999999987764 35788
Q ss_pred ceEEEeccCCccc-ccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 615 VVSIVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~-gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
.++||+|++.+|. .|++||+.++...... .++++.++++..++.+...+.|..+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAEL 137 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhc
Confidence 9999999999998 5999999875311111 2356788899999988776666543
No 95
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=8.1e-22 Score=207.28 Aligned_cols=132 Identities=30% Similarity=0.470 Sum_probs=112.3
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCC---CeEEECCccCCCCChHHh
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG---GRITVGGEDLRTFDKSEW 612 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~---G~I~IdG~di~~i~~~~l 612 (691)
+.|+++|++|+|++. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 359999999999732 3469999999999999999999999999999999999999998 899999999988877788
Q ss_pred hhceEEEeccC--CcccccHHHHHhcCCCCCCCCH----HHHHHHHHHcCcHHHHhcCCccc
Q 005561 613 ARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 613 R~~Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~sd----eeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
|++|+||+|++ .+++.|++|||.++.+....+. +++.++++..++.++....|..+
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANL 144 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 99999999998 4678999999998633222333 45788999999998887776543
No 96
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=6.8e-22 Score=208.33 Aligned_cols=128 Identities=27% Similarity=0.485 Sum_probs=105.3
Q ss_pred EEEEeeEEECCCCC--CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC--hHHhh
Q 005561 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD--KSEWA 613 (691)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~--~~~lR 613 (691)
|+++||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 88999999997321 146999999999999999999999999999999999999999999999999998754 45788
Q ss_pred hceEEEeccC--CcccccHHHHHhcCCCCCCCCH----HHHHHHHHHcCcH--HHHhcCC
Q 005561 614 RVVSIVNQEP--VLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAH--DFIISLP 665 (691)
Q Consensus 614 ~~Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~sd----eeI~~Al~~A~l~--dfI~~LP 665 (691)
++|+||+|++ .+|+.|++|||.++......+. +++.++++.+++. ++....|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCc
Confidence 9999999998 6889999999998632111233 4577888888886 4444433
No 97
>PRK10908 cell division protein FtsE; Provisional
Probab=99.87 E-value=8.6e-22 Score=199.90 Aligned_cols=127 Identities=27% Similarity=0.405 Sum_probs=105.2
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH---hhh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---WAR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~---lR~ 614 (691)
|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 346999999999999999999999999999999999999999999999999998876543 788
Q ss_pred ceEEEeccCCc-ccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCc
Q 005561 615 VVSIVNQEPVL-FSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 615 ~Ia~V~Qd~~L-F~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~ 666 (691)
.++||+|++.+ ++.|++|||.++......+ ++++.++++..++.+++.+.|.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI 136 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCch
Confidence 99999999987 5679999998752111122 2356778888898877665543
No 98
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=4.4e-22 Score=205.25 Aligned_cols=122 Identities=23% Similarity=0.378 Sum_probs=105.7
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC---CCCCeEEECCccCCCCChHHhhh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE---PTGGRITVGGEDLRTFDKSEWAR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~---p~~G~I~IdG~di~~i~~~~lR~ 614 (691)
|+++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|+
T Consensus 3 ~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 3 AKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred eeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 789999999963 469999999999999999999999999999999999985 69999999999999888888899
Q ss_pred ceEEEeccCCcccccHHHHHhcCCCC------CCCCHHHHHHHHHHcCcHHHHh
Q 005561 615 VVSIVNQEPVLFSVSVGENIAYGLPD------ENVSKDDIIKAAKAANAHDFII 662 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~gTIreNI~lG~p~------~~~sdeeI~~Al~~A~l~dfI~ 662 (691)
.|+|++|++.+|+.|++||+.++... ....++++.++++..++.+++.
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 133 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh
Confidence 99999999999999999999876210 0123346788899999976553
No 99
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.87 E-value=6.1e-22 Score=199.77 Aligned_cols=127 Identities=28% Similarity=0.413 Sum_probs=107.5
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH---Hhhh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWAR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~---~lR~ 614 (691)
|+++|++++|+. +.++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 34699999999999999999999999999999999999999999999999999887643 4788
Q ss_pred ceEEEeccCCccc-ccHHHHHhcCCC----CCCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 615 VVSIVNQEPVLFS-VSVGENIAYGLP----DENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~-gTIreNI~lG~p----~~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
.++|++|++.+|. .|++||+.++.. .....++++.++++..++.+++.+.|.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE 136 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 9999999999996 699999987521 111235678899999999887766554
No 100
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=7.9e-22 Score=207.81 Aligned_cols=128 Identities=23% Similarity=0.372 Sum_probs=104.3
Q ss_pred EEEEeeEEECCCCC--CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC----ChHH
Q 005561 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF----DKSE 611 (691)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i----~~~~ 611 (691)
|+++||+|+|+++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999996321 13699999999999999999999999999999999999999999999999998754 3467
Q ss_pred hhhceEEEeccC--CcccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcH-HHHhcCC
Q 005561 612 WARVVSIVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAH-DFIISLP 665 (691)
Q Consensus 612 lR~~Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~-dfI~~LP 665 (691)
+|+.|+||+|++ .+|..|++|||.++......+ ++++.++++..++. ++....|
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP 143 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc
Confidence 899999999997 689999999999863211123 34566778888885 4444433
No 101
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.87 E-value=5.6e-22 Score=199.67 Aligned_cols=123 Identities=26% Similarity=0.357 Sum_probs=104.3
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+|+|++ .++++|+||+|++| .+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999963 46999999999999 99999999999999999999999999999999999998877 77899999
Q ss_pred EEeccCCcccc-cHHHHHhcCCC----CCCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 618 IVNQEPVLFSV-SVGENIAYGLP----DENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 618 ~V~Qd~~LF~g-TIreNI~lG~p----~~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
||+|++.+|.+ |++||+.+... .....++++.++++..++.++.+..|
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 128 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI 128 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch
Confidence 99999999986 99999986421 10112456788999999987655443
No 102
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=8.3e-22 Score=202.44 Aligned_cols=126 Identities=28% Similarity=0.416 Sum_probs=106.2
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC---hHHhhh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD---KSEWAR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~---~~~lR~ 614 (691)
|+++||+++|++ +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999963 246999999999999999999999999999999999999999999999999998876 456888
Q ss_pred ceEEEeccCCccc-ccHHHHHhcCCCC------------CCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 615 VVSIVNQEPVLFS-VSVGENIAYGLPD------------ENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~-gTIreNI~lG~p~------------~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
.++||+|++.+|. .|++||+.++... ....++++.++++..++.+...+.|
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 142 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA 142 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc
Confidence 9999999999887 6999999875321 0123456788899999987665544
No 103
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=8.6e-22 Score=201.39 Aligned_cols=130 Identities=26% Similarity=0.373 Sum_probs=107.8
Q ss_pred EEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH---Hhh
Q 005561 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWA 613 (691)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~---~lR 613 (691)
|+++|++++|+++. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997321 12799999999999999999999999999999999999999999999999999877654 357
Q ss_pred hceEEEeccCCccc-ccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~-gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
+.|+||+|++.+|. .|++|||.++...... ..+++.++++..++.+...+.|..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQ 140 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhh
Confidence 89999999999997 6999999875211111 245688899999998877665543
No 104
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-21 Score=205.43 Aligned_cols=129 Identities=26% Similarity=0.416 Sum_probs=110.3
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
++++||+++|++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+...+++.++
T Consensus 4 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 789999999963 235999999999999999999999999999999999999999999999999998888788899999
Q ss_pred EEeccC--CcccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCccc
Q 005561 618 IVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 618 ~V~Qd~--~LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
||+|++ .+|+.|++||+.++......+ ++++.++++..++.+++.+.|..+
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHL 138 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 999998 488899999998753211122 345788999999988887766543
No 105
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.86 E-value=8.6e-22 Score=198.25 Aligned_cols=127 Identities=31% Similarity=0.527 Sum_probs=106.7
Q ss_pred EEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEE
Q 005561 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (691)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~ 618 (691)
+++||+++|++. +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999631 2469999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EeccC--CcccccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCc
Q 005561 619 VNQEP--VLFSVSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 619 V~Qd~--~LF~gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
++|++ .+++.|++||+.++...... .++++.++++..++.+++.+.|.
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 133 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPF 133 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 99998 46789999999875321111 23467788899999887766554
No 106
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.86 E-value=7.4e-22 Score=200.05 Aligned_cols=125 Identities=20% Similarity=0.304 Sum_probs=103.2
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||++.|++. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999632 25699999999999999999999999999999999999999999999999998764 367788999
Q ss_pred EEeccCCcc-cccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcC
Q 005561 618 IVNQEPVLF-SVSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISL 664 (691)
Q Consensus 618 ~V~Qd~~LF-~gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~L 664 (691)
||+|++.+| +.|++||+.++...... .++++.++++..++.+.....
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 130 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKR 130 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhCh
Confidence 999999999 67999999874210011 235677888888887765443
No 107
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.86 E-value=1.1e-21 Score=201.88 Aligned_cols=126 Identities=26% Similarity=0.422 Sum_probs=105.6
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh---HHhhh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK---SEWAR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~---~~lR~ 614 (691)
|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999961 3469999999999999999999999999999999999999999999999999887764 34788
Q ss_pred ceEEEeccCCccc-ccHHHHHhcCCCC------------CCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 615 VVSIVNQEPVLFS-VSVGENIAYGLPD------------ENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~-gTIreNI~lG~p~------------~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
.++||+|++.+|. .|++||+.++... ....++++.++++..++.++..+.+
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA 143 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc
Confidence 9999999999986 6999999876321 0112456788889999887765544
No 108
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-21 Score=211.77 Aligned_cols=127 Identities=29% Similarity=0.497 Sum_probs=109.2
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+++|++ +..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+++.. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 34699999999999999999999999999999999999999999999999999887754 4799
Q ss_pred EEEeccCCccc-ccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCcc
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~G 667 (691)
+||+|++.+|. .||+|||.|+......+ ++++.++++..++.++..+.|..
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 134 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRE 134 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhh
Confidence 99999999995 69999999874311122 35678999999999988887753
No 109
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.86 E-value=5.7e-22 Score=186.42 Aligned_cols=124 Identities=35% Similarity=0.574 Sum_probs=107.7
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|.+++|.|+|..- + -.++++|++||+|||+||||||||||+||++||..|.+|+|+|||+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~---~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL---P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcc---e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 5688999999632 2 368999999999999999999999999999999999999999999998877764 57899
Q ss_pred EEeccCCccc-ccHHHHHhcCC-CC---CCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 618 IVNQEPVLFS-VSVGENIAYGL-PD---ENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~-p~---~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
+++||..||. -||++||.+|. |. .....+.+..|+..+|+.+|..+||.-+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L 130 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcccc
Confidence 9999999995 69999999995 22 1235677999999999999999999754
No 110
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=5e-22 Score=200.32 Aligned_cols=124 Identities=29% Similarity=0.477 Sum_probs=103.9
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 468999999963 46999999999999999999999999999999999999999999999999987654 3578899
Q ss_pred EEeccCCccc-ccHHHHHhcCCCCC----CCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 618 IVNQEPVLFS-VSVGENIAYGLPDE----NVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~p~~----~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
||+|++.+|. .|++||+.++.... ...++++.++++..++.++..+.|.
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChh
Confidence 9999999986 69999998763211 1123567889999999877765443
No 111
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.86 E-value=9.2e-22 Score=198.30 Aligned_cols=126 Identities=27% Similarity=0.421 Sum_probs=104.4
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCC--CChHHhhhc
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT--FDKSEWARV 615 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~--i~~~~lR~~ 615 (691)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999963 469999999999999999999999999999999999999999999999998853 455678899
Q ss_pred eEEEeccCCccc-ccHHHHHhcCCCC-CCC----CHHHHHHHHHHcCcHHHHhcCCc
Q 005561 616 VSIVNQEPVLFS-VSVGENIAYGLPD-ENV----SKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 616 Ia~V~Qd~~LF~-gTIreNI~lG~p~-~~~----sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
|+||+|++.+|. .|++||+.++... ... .++++.++++..++.+.+.+.|.
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 134 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA 134 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCcc
Confidence 999999999996 6999999875210 011 23457778888888776666553
No 112
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.86 E-value=1.4e-21 Score=199.26 Aligned_cols=132 Identities=24% Similarity=0.332 Sum_probs=109.0
Q ss_pred cEEEEeeEEECCCCCC-cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH---h
Q 005561 537 DICLEDVYFSYPLRPD-VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---W 612 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~-~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~---l 612 (691)
.|+++||+++|+++.. .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974211 35999999999999999999999999999999999999999999999999998887653 3
Q ss_pred -hhceEEEeccCCcccc-cHHHHHhcCCC----CCCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 613 -ARVVSIVNQEPVLFSV-SVGENIAYGLP----DENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 613 -R~~Ia~V~Qd~~LF~g-TIreNI~lG~p----~~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
++.++||+|++.+|.+ |++|||.++.. .....++++.++++..++.+++.+.|..+
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 147 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQL 147 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhC
Confidence 3689999999999985 99999986421 11123467889999999988877766543
No 113
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.86 E-value=8.6e-22 Score=201.73 Aligned_cols=123 Identities=22% Similarity=0.379 Sum_probs=102.2
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHh-hhce
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARVV 616 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~l-R~~I 616 (691)
|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999962 469999999999999999999999999999999999999999999999999988876654 5679
Q ss_pred EEEeccCCcccc-cHHHHHhcCCCCCC--------------CCHHHHHHHHHHcCcHHHHhc
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGLPDEN--------------VSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~p~~~--------------~sdeeI~~Al~~A~l~dfI~~ 663 (691)
+||+|++.+|.+ |++|||.++..... ...+++.++++..++.+....
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 139 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADR 139 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhC
Confidence 999999999987 99999987632110 113356777888887655443
No 114
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.2e-21 Score=211.19 Aligned_cols=129 Identities=27% Similarity=0.420 Sum_probs=107.4
Q ss_pred EEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH---hh
Q 005561 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---WA 613 (691)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~---lR 613 (691)
|+++||+|+|+.+. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997211 357999999999999999999999999999999999999999999999999998887654 57
Q ss_pred hceEEEeccCCccc-ccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCc
Q 005561 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~-gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~ 666 (691)
++|+||+|++.+|. .|++|||.++......+ ++++.++++..++.++..+.|.
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 139 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPA 139 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 89999999999996 69999998753211122 3567888999998877665443
No 115
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.86 E-value=1.6e-21 Score=197.68 Aligned_cols=129 Identities=26% Similarity=0.406 Sum_probs=105.4
Q ss_pred EEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH---hh
Q 005561 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE---WA 613 (691)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~---lR 613 (691)
|+++||+++|+++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996321 246999999999999999999999999999999999999999999999999998887644 34
Q ss_pred -hceEEEeccCCccc-ccHHHHHhcCCC----CCCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 614 -RVVSIVNQEPVLFS-VSVGENIAYGLP----DENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 614 -~~Ia~V~Qd~~LF~-gTIreNI~lG~p----~~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
+.|+||+|++.+|. .|++||+.++.. +....++++.++++..++++...+.|.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 68999999999995 699999987421 100123467788899898877665553
No 116
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=2e-21 Score=193.50 Aligned_cols=128 Identities=28% Similarity=0.426 Sum_probs=104.5
Q ss_pred EEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH---Hhh
Q 005561 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWA 613 (691)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~---~lR 613 (691)
++++||+..|..+. ...+|+|+||+|++||.|||+||||||||||+++|.|+-.|++|.|.++|.|+..++.+ .+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 24699999999999999999999999999999999999999999999999999999854 344
Q ss_pred -hceEEEeccCCccc-ccHHHHHhc----CCCCCCCCHHHHHHHHHHcCcHHHHh-cCC
Q 005561 614 -RVVSIVNQEPVLFS-VSVGENIAY----GLPDENVSKDDIIKAAKAANAHDFII-SLP 665 (691)
Q Consensus 614 -~~Ia~V~Qd~~LF~-gTIreNI~l----G~p~~~~sdeeI~~Al~~A~l~dfI~-~LP 665 (691)
++||||+|+..|+. -|++|||.+ ........++.+.+.++..|+.+... ..|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p 140 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP 140 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc
Confidence 57999999999986 599999984 22111123566778888889986665 445
No 117
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.3e-21 Score=203.98 Aligned_cols=129 Identities=26% Similarity=0.410 Sum_probs=111.1
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999962 4699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEeccCCcccc-cHHHHHhcCCCC--------CCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGLPD--------ENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~p~--------~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
+||+|++.+|.+ |++||+.++... ....++++.++++..++.+++...|..+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 148 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccC
Confidence 999999877654 999999976310 0123457889999999988877766543
No 118
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.5e-21 Score=210.52 Aligned_cols=126 Identities=30% Similarity=0.488 Sum_probs=108.6
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+++|+ +..+|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|
T Consensus 6 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 599999999996 3468999999999999999999999999999999999999999999999999987664 46889
Q ss_pred EEEeccCCccc-ccHHHHHhcCCCCC----CCCHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGLPDE----NVSKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~p~~----~~sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
+||+|++.||. .||+|||.|+.... ...++++.++++..++.++..+.|.-
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~ 136 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQ 136 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 99999999996 59999999873211 11246788999999998887776653
No 119
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.8e-21 Score=204.75 Aligned_cols=128 Identities=28% Similarity=0.467 Sum_probs=106.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCC--CCChHHhhh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR--TFDKSEWAR 614 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~--~i~~~~lR~ 614 (691)
-|+++||+|+|++ +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4999999999962 346999999999999999999999999999999999999999999999999984 345667899
Q ss_pred ceEEEeccC--CcccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCc
Q 005561 615 VVSIVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 615 ~Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~ 666 (691)
.|+||+|++ .+|+.|++|||.++......+ ++++.++++..+++++..+.+.
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 140 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTH 140 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcc
Confidence 999999998 678999999998753211122 3457888899999876655443
No 120
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=205.88 Aligned_cols=121 Identities=28% Similarity=0.441 Sum_probs=101.6
Q ss_pred EEEEeeEEECCCCC--CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCC----CChHH
Q 005561 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT----FDKSE 611 (691)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~----i~~~~ 611 (691)
|+++||+|+|++.. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999997321 1469999999999999999999999999999999999999999999999999864 34567
Q ss_pred hhhceEEEeccC--CcccccHHHHHhcCCCCCCCCH----HHHHHHHHHcCcH
Q 005561 612 WARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANAH 658 (691)
Q Consensus 612 lR~~Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~sd----eeI~~Al~~A~l~ 658 (691)
+|+.|+||+|++ .+|+.||+|||.++......+. +.+.++++..+++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 135 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLP 135 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCC
Confidence 888999999998 7899999999998732111222 3567788899986
No 121
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=1.7e-21 Score=200.02 Aligned_cols=124 Identities=30% Similarity=0.434 Sum_probs=103.7
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEeccCCccc-ccHHHHHhcCCCCCCC--------CHHHHHHHHHHcCcHHHHhcCCc
Q 005561 618 IVNQEPVLFS-VSVGENIAYGLPDENV--------SKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~p~~~~--------sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
||+|++.+|. .|++||+.++...... .++++.++++..++.++..+.|.
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA 135 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh
Confidence 9999999996 6999999986321101 13457788899999776665443
No 122
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.86 E-value=1.4e-21 Score=198.19 Aligned_cols=98 Identities=29% Similarity=0.493 Sum_probs=89.7
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHh-hhce
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARVV 616 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~l-R~~I 616 (691)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+.... |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999962 469999999999999999999999999999999999999999999999999988877654 6789
Q ss_pred EEEeccCCcccc-cHHHHHhcCC
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGL 638 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~ 638 (691)
+||+|++.+|.+ |++||+.++.
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~ 100 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGA 100 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHh
Confidence 999999999986 9999999864
No 123
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.86 E-value=2.7e-21 Score=196.70 Aligned_cols=119 Identities=27% Similarity=0.452 Sum_probs=104.6
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++||++.|+ +.++++|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+++...+++.+
T Consensus 7 ~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 499999999996 24699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEeccCCcccccHHHHHhcCC---CCCCCCHHHHHHHHHHcCcHH
Q 005561 617 SIVNQEPVLFSVSVGENIAYGL---PDENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 617 a~V~Qd~~LF~gTIreNI~lG~---p~~~~sdeeI~~Al~~A~l~d 659 (691)
+||+|++.+|+.|++||+.++. .. ...++++.++++..++.+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~-~~~~~~~~~~l~~~~l~~ 128 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQ-QPDPAIFLDDLERFALPD 128 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCC-ChHHHHHHHHHHHcCCCh
Confidence 9999999999999999998641 11 123456778888888853
No 124
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.86 E-value=2.5e-21 Score=193.50 Aligned_cols=122 Identities=23% Similarity=0.349 Sum_probs=105.8
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||++.|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 468999999963 46899999999999999999999999999999999999999999999999987653 56789999
Q ss_pred EEeccCCcc-cccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 618 IVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 618 ~V~Qd~~LF-~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
|++|++.++ +.|++||+.++.+. ..++++.++++..++.++....+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~ 123 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHAD--HSDEQVEEALARVGLNGFEDRPV 123 (201)
T ss_pred EeccccccCCCcCHHHHHHhhccc--ccHHHHHHHHHHcCChhhhcCch
Confidence 999999886 68999999987542 36788999999999987654433
No 125
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.86 E-value=1.4e-21 Score=210.90 Aligned_cols=126 Identities=25% Similarity=0.442 Sum_probs=108.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 4999999999962 468999999999999999999999999999999999999999999999999987765 36889
Q ss_pred EEEeccCCccc-ccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
+||+|++.||. .||+|||.|+...... .++++.++++..++.++..+.|..
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~ 134 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ 134 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhh
Confidence 99999999995 7999999987422111 246788999999998887776653
No 126
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.7e-21 Score=202.54 Aligned_cols=127 Identities=28% Similarity=0.488 Sum_probs=107.5
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC-hHHhhhce
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD-KSEWARVV 616 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~-~~~lR~~I 616 (691)
|+++||+++|+. +.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++..++ ...+++.|
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999962 346999999999999999999999999999999999999999999999999998776 46788899
Q ss_pred EEEeccCC--cccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCc
Q 005561 617 SIVNQEPV--LFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 617 a~V~Qd~~--LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~ 666 (691)
+||+|++. +|+.|++|||.++......+ ++++.++++..++.+++...|.
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 135 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK 135 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcc
Confidence 99999985 67889999998863211112 4567888999999888776654
No 127
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=2.6e-21 Score=193.21 Aligned_cols=120 Identities=21% Similarity=0.368 Sum_probs=102.2
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 469999999999999999999999999999999999999999999999999875 3457889999
Q ss_pred EEeccCCcc-cccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHh
Q 005561 618 IVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFII 662 (691)
Q Consensus 618 ~V~Qd~~LF-~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~ 662 (691)
|++|++.+| ..|++||+.++... ...++++.++++..++.+...
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~ 122 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHF-SPGAVGITELCRLFSLEHLID 122 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhc-CcchHHHHHHHHHcCCchhhh
Confidence 999999996 57999999986311 123456788888888766543
No 128
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.86 E-value=1.9e-21 Score=195.98 Aligned_cols=124 Identities=31% Similarity=0.532 Sum_probs=103.5
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999998766543 57899
Q ss_pred EEeccCCccc-ccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCc
Q 005561 618 IVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
||+|++.+|. .|++||+.++...... .++++.++++..++.+++...|.
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPK 129 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChh
Confidence 9999999995 6999999875211111 23457788899999887766554
No 129
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.85 E-value=1.8e-21 Score=194.03 Aligned_cols=124 Identities=23% Similarity=0.321 Sum_probs=105.5
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|+ +.++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++...+ ..++++++
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRG---ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 47899999996 246999999999999999999999999999999999999999999999999988765 46788999
Q ss_pred EEeccCCccc-ccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 618 IVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
|++|++.+|. .|++||+.++.......++++.++++..+++++....|
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 125 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPA 125 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCCh
Confidence 9999999986 69999998753221112456889999999988775544
No 130
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.85 E-value=1.1e-21 Score=197.74 Aligned_cols=120 Identities=27% Similarity=0.397 Sum_probs=101.0
Q ss_pred EEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEE
Q 005561 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (691)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~ 618 (691)
+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. .+|+.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 46999999999999999999999999999999999999999999999998764 57889999
Q ss_pred EeccCCc---ccccHHHHHhcCCCCC--------CCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 619 VNQEPVL---FSVSVGENIAYGLPDE--------NVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 619 V~Qd~~L---F~gTIreNI~lG~p~~--------~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
|+|++.+ |+.|++|||.++.... ...++++.++++..++.++..+.|.
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 131 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG 131 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 9999987 6789999998863210 1134568889999999887765443
No 131
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.85 E-value=2e-21 Score=201.12 Aligned_cols=127 Identities=25% Similarity=0.382 Sum_probs=106.5
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC---------
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD--------- 608 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~--------- 608 (691)
|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999963 46999999999999999999999999999999999999999999999999987653
Q ss_pred ----hHHhhhceEEEeccCCccc-ccHHHHHhcCCC-----CCCCCHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 609 ----KSEWARVVSIVNQEPVLFS-VSVGENIAYGLP-----DENVSKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 609 ----~~~lR~~Ia~V~Qd~~LF~-gTIreNI~lG~p-----~~~~sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
...+|+.++||+|++.+|. .|++||+.++.. .....++++.++++..++.+++.+.|..
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhh
Confidence 2467889999999999985 799999987521 1111345678899999998877766643
No 132
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.85 E-value=3.7e-21 Score=199.76 Aligned_cols=126 Identities=24% Similarity=0.357 Sum_probs=108.4
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999962 46999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEeccCCc-ccccHHHHHhcCCCCCC----CCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 618 IVNQEPVL-FSVSVGENIAYGLPDEN----VSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 618 ~V~Qd~~L-F~gTIreNI~lG~p~~~----~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
|++|++.+ ++.|++||+.++..... ..++++.++++..++.++..+.+.
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 133 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYP 133 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcc
Confidence 99999988 67899999988632111 124567889999999876655443
No 133
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=2.5e-21 Score=200.78 Aligned_cols=126 Identities=25% Similarity=0.421 Sum_probs=109.0
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|+ +.++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++..++++.++
T Consensus 3 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 78999999996 246999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEeccCCcccc-cHHHHHhcCCCC--------CCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 618 IVNQEPVLFSV-SVGENIAYGLPD--------ENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 618 ~V~Qd~~LF~g-TIreNI~lG~p~--------~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
||+|++.+|.+ |++||+.++... ....++++.++++..++.++....|.
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 137 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT 137 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc
Confidence 99999999876 999999986310 01134568889999999877666553
No 134
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.8e-21 Score=202.08 Aligned_cols=133 Identities=22% Similarity=0.391 Sum_probs=110.9
Q ss_pred cEEEEeeEEECCCCC---CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC-hHHh
Q 005561 537 DICLEDVYFSYPLRP---DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD-KSEW 612 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~---~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~-~~~l 612 (691)
-|+++|++|+|++.. ++++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987654 3567
Q ss_pred hhceEEEeccC--CcccccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCcccc
Q 005561 613 ARVVSIVNQEP--VLFSVSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQVWL 669 (691)
Q Consensus 613 R~~Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~Gyd 669 (691)
|+.++||+|++ .+|..|+.||+.++...... .++++.++++..++.++..+.|..+-
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS 146 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLS 146 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCC
Confidence 89999999998 47878999999986211111 24568889999999998888775443
No 135
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.85 E-value=1.9e-21 Score=200.64 Aligned_cols=118 Identities=32% Similarity=0.451 Sum_probs=101.6
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC-----CCeEEECCccCCCC--ChH
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT-----GGRITVGGEDLRTF--DKS 610 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~-----~G~I~IdG~di~~i--~~~ 610 (691)
|+++||+++|++ .++++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+. +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 36899999999999999999999999999999999999998 99999999998763 456
Q ss_pred HhhhceEEEeccCCcccccHHHHHhcCCCCC-----CCCHHHHHHHHHHcCcH
Q 005561 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPDE-----NVSKDDIIKAAKAANAH 658 (691)
Q Consensus 611 ~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~-----~~sdeeI~~Al~~A~l~ 658 (691)
.+|+.|+||+|++.+|..|++||+.++.... ...++++.++++..++.
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 131 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALW 131 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 7789999999999999999999998752111 11235678889999997
No 136
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.85 E-value=2.2e-21 Score=196.61 Aligned_cols=130 Identities=22% Similarity=0.361 Sum_probs=108.9
Q ss_pred EEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH---Hhh
Q 005561 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWA 613 (691)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~---~lR 613 (691)
++++||++.|+... ...+|+|+||++++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996321 25699999999999999999999999999999999999999999999999999877643 468
Q ss_pred hceEEEeccCCccc-ccHHHHHhcCCCCC-CCC----HHHHHHHHHHcCcHHHHhcCCcc
Q 005561 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDE-NVS----KDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~-gTIreNI~lG~p~~-~~s----deeI~~Al~~A~l~dfI~~LP~G 667 (691)
+.++|++|++.+|. .|+.||+.++.... ..+ ++++.++++..++.+++.+.|..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 141 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHN 141 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhh
Confidence 89999999999998 69999998753211 122 34578889999998888777653
No 137
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.7e-21 Score=204.01 Aligned_cols=129 Identities=22% Similarity=0.340 Sum_probs=104.7
Q ss_pred EEEEeeEEECCCCC--CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCC---------
Q 005561 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT--------- 606 (691)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~--------- 606 (691)
|+++||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999997421 1359999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHhhhceEEEeccC--CcccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcH-HHHhcC
Q 005561 607 ---------------FDKSEWARVVSIVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAH-DFIISL 664 (691)
Q Consensus 607 ---------------i~~~~lR~~Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~-dfI~~L 664 (691)
.+...+|+.|+||+|+| .+|..||+|||.|+......+ ++++.++++..++. ++..+-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 162 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRS 162 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 13467889999999986 789999999999873211122 35578889999985 565554
Q ss_pred Cc
Q 005561 665 PQ 666 (691)
Q Consensus 665 P~ 666 (691)
|.
T Consensus 163 ~~ 164 (305)
T PRK13651 163 PF 164 (305)
T ss_pred hh
Confidence 44
No 138
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.7e-21 Score=196.04 Aligned_cols=126 Identities=26% Similarity=0.386 Sum_probs=104.4
Q ss_pred EEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
|+++|++++|++.. ..++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996311 1479999999999999999999999999999999999999999999999998763 46789
Q ss_pred EEEeccCCccc-ccHHHHHhcCCCCC----CCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGLPDE----NVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~p~~----~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
+||+|++.+|. .|++||+.++.... ...++++.++++..++.++..+.|..+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 132 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQL 132 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccC
Confidence 99999999997 69999998752110 112467888999999988777666543
No 139
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.85 E-value=3.1e-21 Score=197.10 Aligned_cols=124 Identities=23% Similarity=0.395 Sum_probs=102.8
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHh-hhce
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARVV 616 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~l-R~~I 616 (691)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 47899999996 2469999999999999999999999999999999999999999999999999988776554 5689
Q ss_pred EEEeccCCcccc-cHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcC
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISL 664 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~L 664 (691)
+|++|++.+|.+ |++||+.++.+..... ++++.++++..++.+.....
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 130 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK 130 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC
Confidence 999999999987 9999998753211111 24566778888887655443
No 140
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3e-21 Score=198.59 Aligned_cols=120 Identities=32% Similarity=0.418 Sum_probs=102.4
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
++++||+|+|++ ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGG--GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCC--cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 468999999973 146999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeccCCccc-ccHHHHHhcCCCCC----CCCHHHHHHHHHHcCcHH
Q 005561 618 IVNQEPVLFS-VSVGENIAYGLPDE----NVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~p~~----~~sdeeI~~Al~~A~l~d 659 (691)
||+|++.+|. .|++||+.++.... ...++++.++++..++.+
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 125 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP 125 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc
Confidence 9999999995 69999998752110 112356778888888763
No 141
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=2.7e-21 Score=195.97 Aligned_cols=125 Identities=24% Similarity=0.317 Sum_probs=104.5
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999962 4699999999999999999999999999999999999999999999999988653 357788999
Q ss_pred EEeccCCcccc-cHHHHHhcCCC----CCCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 618 IVNQEPVLFSV-SVGENIAYGLP----DENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 618 ~V~Qd~~LF~g-TIreNI~lG~p----~~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
||+|++.+|.. |++||+.++.. .....++++.++++..++.++..+.|.
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 130 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK 130 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh
Confidence 99999999875 99999986421 111124568889999999887665443
No 142
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.85 E-value=3.8e-21 Score=199.49 Aligned_cols=126 Identities=26% Similarity=0.394 Sum_probs=107.7
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|+++.|+ +.++|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.+++...+|+.++
T Consensus 2 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAG---GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 78999999996 246999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEeccCC-cccccHHHHHhcCCCC--------CCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 618 IVNQEPV-LFSVSVGENIAYGLPD--------ENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 618 ~V~Qd~~-LF~gTIreNI~lG~p~--------~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
|++|++. .+..||+||+.++... ....++++.++++..++.+...+.+.
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS 136 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 9999985 4578999999886310 01123468889999999887665444
No 143
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.4e-21 Score=199.75 Aligned_cols=130 Identities=23% Similarity=0.354 Sum_probs=109.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++|++++|++. ..++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 59999999999742 24689999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEeccCC--cccccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 617 SIVNQEPV--LFSVSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 617 a~V~Qd~~--LF~gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
+||+|++. ++..|+++|+.++...... .++++.++++..++.++....|..
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNA 142 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCccc
Confidence 99999984 5567899999886321111 234677889999998877665543
No 144
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.85 E-value=3.2e-21 Score=210.65 Aligned_cols=125 Identities=26% Similarity=0.475 Sum_probs=110.6
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++|++++|+ +.++|+|+||+|++||.++|+||+|||||||+|+|+|+++|++|+|.++|.++.+++..+++++|
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 389999999996 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCc-ccccHHHHHhcCCCC--------CCCCHHHHHHHHHHcCcHHHHhcC
Q 005561 617 SIVNQEPVL-FSVSVGENIAYGLPD--------ENVSKDDIIKAAKAANAHDFIISL 664 (691)
Q Consensus 617 a~V~Qd~~L-F~gTIreNI~lG~p~--------~~~sdeeI~~Al~~A~l~dfI~~L 664 (691)
+||+|++.+ |+.|++||+.+++.. ...+++++.++++..++.++..+.
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~ 136 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP 136 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC
Confidence 999999988 688999999987521 112346789999999998877553
No 145
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=3.1e-21 Score=198.47 Aligned_cols=128 Identities=22% Similarity=0.287 Sum_probs=105.3
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCC------CCChHH
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR------TFDKSE 611 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~------~i~~~~ 611 (691)
|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 46999999999999999999999999999999999999999999999999873 223467
Q ss_pred hhhceEEEeccCCcccc-cHHHHHhcCC-----CCCCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 612 WARVVSIVNQEPVLFSV-SVGENIAYGL-----PDENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 612 lR~~Ia~V~Qd~~LF~g-TIreNI~lG~-----p~~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
+|++|+||+|++.+|.+ |++|||.++. .......+++.++++..++.+++.+.|..+
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 142 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHL 142 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhC
Confidence 78999999999999975 9999997531 000112355778888999988877766433
No 146
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.5e-21 Score=199.41 Aligned_cols=122 Identities=31% Similarity=0.455 Sum_probs=102.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCC--CCh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FDK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~--i~~ 609 (691)
.|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5999999999962 469999999999999999999999999999999999975 689999999999865 345
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCC-----CCCHHHHHHHHHHcCcHHHH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDE-----NVSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~-----~~sdeeI~~Al~~A~l~dfI 661 (691)
..+|+.|+||+|++.+|..|++||+.++.... ...++++.++++.+++.+++
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 139 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV 139 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh
Confidence 67889999999999999999999998752110 11245678889999886543
No 147
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.85 E-value=2.8e-21 Score=193.71 Aligned_cols=124 Identities=21% Similarity=0.328 Sum_probs=102.4
Q ss_pred EEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh----HHhhhc
Q 005561 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK----SEWARV 615 (691)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~----~~lR~~ 615 (691)
++||++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999962 469999999999999999999999999999999999999999999999999765542 246789
Q ss_pred eEEEeccCCccc-ccHHHHHhcCCCCC----CCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 616 VSIVNQEPVLFS-VSVGENIAYGLPDE----NVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 616 Ia~V~Qd~~LF~-gTIreNI~lG~p~~----~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
++||+|++.+|. .|++||+.++.... ...++++.++++..++.++..+.+.
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 133 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIY 133 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChh
Confidence 999999999997 69999998753211 1134668889999999776655443
No 148
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.85 E-value=3.7e-21 Score=207.74 Aligned_cols=125 Identities=29% Similarity=0.450 Sum_probs=106.8
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|++ ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++.+.+. .++.|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 889999999963 469999999999999999999999999999999999999999999999999987653 467899
Q ss_pred EEeccCCccc-ccHHHHHhcCCCC----CCC----CHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 618 IVNQEPVLFS-VSVGENIAYGLPD----ENV----SKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~p~----~~~----sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
||+|++.+|. .|++|||.|+... ... .++++.++++..++.++..+.|..
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 136 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ 136 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhh
Confidence 9999999996 5999999987321 011 245788899999998877766643
No 149
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=3.4e-21 Score=201.06 Aligned_cols=124 Identities=30% Similarity=0.410 Sum_probs=104.5
Q ss_pred cCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCC--C
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--F 607 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~--i 607 (691)
.+.|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++.+ .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999962 4699999999999999999999999999999999999985 89999999999875 3
Q ss_pred ChHHhhhceEEEeccCCcccccHHHHHhcCCC------CCCCCHHHHHHHHHHcCcHHHH
Q 005561 608 DKSEWARVVSIVNQEPVLFSVSVGENIAYGLP------DENVSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 608 ~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p------~~~~sdeeI~~Al~~A~l~dfI 661 (691)
+...+|+.|+||+|++.+|.+|++|||.++.. .....++++.++++..++.+++
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 153 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV 153 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh
Confidence 45678899999999999999999999987521 0011245678899999986543
No 150
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.4e-21 Score=198.79 Aligned_cols=122 Identities=31% Similarity=0.476 Sum_probs=103.4
Q ss_pred cCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCC--C
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--F 607 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~--i 607 (691)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 467999999999963 469999999999999999999999999999999999997 589999999999853 4
Q ss_pred ChHHhhhceEEEeccCCcccccHHHHHhcCCCCC-CCC----HHHHHHHHHHcCcHH
Q 005561 608 DKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDE-NVS----KDDIIKAAKAANAHD 659 (691)
Q Consensus 608 ~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~-~~s----deeI~~Al~~A~l~d 659 (691)
+...+|++|+||+|++.+|..|++||+.++.... ..+ ++++.++++.+++.+
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 144 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN 144 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh
Confidence 5667899999999999999999999998763210 112 356788899998743
No 151
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.85 E-value=5e-21 Score=207.87 Aligned_cols=128 Identities=29% Similarity=0.486 Sum_probs=109.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999962 4689999999999999999999999999999999999999999999999999876653 5789
Q ss_pred EEEeccCCccc-ccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCcccc
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQVWL 669 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~Gyd 669 (691)
+||+|++.||. -||+|||.|+......+ ++++.++++..++.++..+.|..+-
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LS 146 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLS 146 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCC
Confidence 99999999995 59999999874211112 3567889999999999988886543
No 152
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.85 E-value=5.2e-21 Score=198.19 Aligned_cols=120 Identities=30% Similarity=0.422 Sum_probs=104.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999962 46999999999999999999999999999999999999999999999998753 567889
Q ss_pred EEEeccCCccc-ccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
+||+|++.+|. .|++||+.++... ..++++.++++..++.++..+.|.
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~ 132 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKG--QWRDAALQALAAVGLADRANEWPA 132 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccc--hHHHHHHHHHHHcCChhHhcCChh
Confidence 99999999997 6999999986422 246788899999999877655443
No 153
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.85 E-value=3.5e-21 Score=197.82 Aligned_cols=126 Identities=21% Similarity=0.353 Sum_probs=105.3
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC--ChHHhhhc
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF--DKSEWARV 615 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i--~~~~lR~~ 615 (691)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+. +...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999962 4699999999999999999999999999999999999999999999999998764 34577889
Q ss_pred eEEEeccCCccc-ccHHHHHhcCCC-----CCCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 616 VSIVNQEPVLFS-VSVGENIAYGLP-----DENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 616 Ia~V~Qd~~LF~-gTIreNI~lG~p-----~~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
++|++|++.+|. .|++||+.++.. +....++++.++++..++.+...+.|.
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 135 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPS 135 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChh
Confidence 999999999886 699999987521 001123457788888898877666554
No 154
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.4e-21 Score=199.74 Aligned_cols=120 Identities=32% Similarity=0.439 Sum_probs=102.0
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCC--CC
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FD 608 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~--i~ 608 (691)
..|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 36999999999963 469999999999999999999999999999999999998 689999999999863 56
Q ss_pred hHHhhhceEEEeccCCcccccHHHHHhcCCCCCCC---CHHHHHHHHHHcCcH
Q 005561 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV---SKDDIIKAAKAANAH 658 (691)
Q Consensus 609 ~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~---sdeeI~~Al~~A~l~ 658 (691)
..++|+.|+||+|++.+|..|++||+.++...... .++++.++++.+++.
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~ 141 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVW 141 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCc
Confidence 67889999999999999999999999986421111 245677788888764
No 155
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=3.2e-21 Score=193.97 Aligned_cols=121 Identities=17% Similarity=0.315 Sum_probs=100.8
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|+ +.++++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.. .+|+.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 47899999996 2469999999999999999999999999999999999999999999999998753 5688999
Q ss_pred EEeccCCcccc-cHHHHHhcCCCC----CCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 618 IVNQEPVLFSV-SVGENIAYGLPD----ENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 618 ~V~Qd~~LF~g-TIreNI~lG~p~----~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
|++|++.+|.+ |++||+.++... ....++++.++++..++.+.....+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 126 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV 126 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcH
Confidence 99999999975 999999874210 0112456788889999877655433
No 156
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.85 E-value=4.5e-21 Score=195.71 Aligned_cols=98 Identities=29% Similarity=0.476 Sum_probs=89.5
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH-hhhce
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARVV 616 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~-lR~~I 616 (691)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999962 46999999999999999999999999999999999999999999999999998887654 46789
Q ss_pred EEEeccCCcccc-cHHHHHhcCC
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGL 638 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~ 638 (691)
+|++|++.+|.+ |++||+.++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~ 100 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGL 100 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHH
Confidence 999999999986 9999998763
No 157
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.85 E-value=5.3e-21 Score=208.01 Aligned_cols=126 Identities=27% Similarity=0.449 Sum_probs=107.1
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++. .++.|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 3899999999962 469999999999999999999999999999999999999999999999999987664 35789
Q ss_pred EEEeccCCccc-ccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCcc
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~G 667 (691)
+||+|++.+|. .||+|||.++......+ ++++.++++..++.++..+.|..
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~ 133 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKA 133 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhh
Confidence 99999999996 59999999863211112 35688899999998887766653
No 158
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=5.3e-21 Score=191.57 Aligned_cols=124 Identities=19% Similarity=0.326 Sum_probs=106.0
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999962 46999999999999999999999999999999999999999999999999987654 46788999
Q ss_pred EEeccCCccc-ccHHHHHhcCCCCCC-CCHHHHHHHHHHcCcHHHHhcCC
Q 005561 618 IVNQEPVLFS-VSVGENIAYGLPDEN-VSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~p~~~-~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
|++|++.++. .|++||+.++.+... ..++++.++++..++.++....+
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 127 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPV 127 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCCh
Confidence 9999998886 699999987643211 34678889999999987765543
No 159
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.85 E-value=4.4e-21 Score=187.10 Aligned_cols=96 Identities=34% Similarity=0.637 Sum_probs=90.2
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|++. ..++++|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+++...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999742 346999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEeccCCcccccHHHHH
Q 005561 618 IVNQEPVLFSVSVGENI 634 (691)
Q Consensus 618 ~V~Qd~~LF~gTIreNI 634 (691)
||+|++.+|.+|++||+
T Consensus 80 ~~~q~~~~~~~tv~~~l 96 (173)
T cd03246 80 YLPQDDELFSGSIAENI 96 (173)
T ss_pred EECCCCccccCcHHHHC
Confidence 99999999999999997
No 160
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=5.7e-21 Score=200.77 Aligned_cols=121 Identities=31% Similarity=0.442 Sum_probs=99.9
Q ss_pred EEEEeeEEECCCCC--CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC----ChHH
Q 005561 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF----DKSE 611 (691)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i----~~~~ 611 (691)
|+++||+|+|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997321 13699999999999999999999999999999999999999999999999998764 3567
Q ss_pred hhhceEEEeccC--CcccccHHHHHhcCCCCCCCCHH----HHHHHHHHcCcH
Q 005561 612 WARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSKD----DIIKAAKAANAH 658 (691)
Q Consensus 612 lR~~Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~sde----eI~~Al~~A~l~ 658 (691)
+|+.|+||+|++ .+|+.|++|||.++......+.+ .+.++++..++.
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 135 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGIS 135 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 889999999998 68899999999875211112232 355677788885
No 161
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.85 E-value=4.2e-21 Score=207.71 Aligned_cols=129 Identities=29% Similarity=0.519 Sum_probs=110.0
Q ss_pred cCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCC--CeEEECCccCCCCChHHh
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG--GRITVGGEDLRTFDKSEW 612 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~--G~I~IdG~di~~i~~~~l 612 (691)
.|.|+++||+++|++ ..+|+|+||+|++||.++|+||||||||||+++|+|+++|++ |+|.+||.++.+.+. .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 467999999999962 469999999999999999999999999999999999999999 999999999987664 4
Q ss_pred hhceEEEeccCCcccc-cHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCccc
Q 005561 613 ARVVSIVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 613 R~~Ia~V~Qd~~LF~g-TIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
++.|+||+|++.||.. ||+|||.|+......+ ++++.++++..++.++..+.|..+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~L 138 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQL 138 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhC
Confidence 6789999999999965 9999999863211122 356888999999998888877644
No 162
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.3e-21 Score=202.54 Aligned_cols=127 Identities=25% Similarity=0.443 Sum_probs=105.5
Q ss_pred EEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHh----hh
Q 005561 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW----AR 614 (691)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~l----R~ 614 (691)
.++||++.|. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..++ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4668888885 3468999999999999999999999999999999999999999999999999988776543 46
Q ss_pred ceEEEeccCCccc-ccHHHHHhcCCCC----CCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 615 VVSIVNQEPVLFS-VSVGENIAYGLPD----ENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~-gTIreNI~lG~p~----~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
+++||+|++.+|. .|++|||.++... ....++++.++++..++.+++...|..+
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 161 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDEL 161 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccC
Confidence 8999999999994 6999999875211 1112456888999999998888777644
No 163
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5.1e-21 Score=199.70 Aligned_cols=123 Identities=27% Similarity=0.419 Sum_probs=103.1
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCC--CC
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FD 608 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~--i~ 608 (691)
..|+++||+|+|+ +.++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+
T Consensus 19 ~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 3599999999996 3579999999999999999999999999999999999997 589999999999864 34
Q ss_pred hHHhhhceEEEeccCCcccccHHHHHhcCCCCCC-----CCHHHHHHHHHHcCcHHHH
Q 005561 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-----VSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 609 ~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~-----~sdeeI~~Al~~A~l~dfI 661 (691)
...+|+.|+||+|++.+|..|++|||.++..... ..++++.++++..++.+++
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i 153 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV 153 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh
Confidence 5678899999999999999999999988632111 1235577788888886544
No 164
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.5e-21 Score=197.52 Aligned_cols=121 Identities=29% Similarity=0.428 Sum_probs=101.3
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCC--CC
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--FD 608 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~--i~ 608 (691)
.-|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 35999999999962 4699999999999999999999999999999999999997 48999999998853 34
Q ss_pred hHHhhhceEEEeccCCcccccHHHHHhcCCCCCC-----CCHHHHHHHHHHcCcHH
Q 005561 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-----VSKDDIIKAAKAANAHD 659 (691)
Q Consensus 609 ~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~-----~sdeeI~~Al~~A~l~d 659 (691)
...+|+.|+||+|++.+|+.|++|||.++..... ..++++.++++.+++.+
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 138 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN 138 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCch
Confidence 5678899999999999999999999998631100 12456777888888744
No 165
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6.5e-21 Score=198.72 Aligned_cols=127 Identities=24% Similarity=0.427 Sum_probs=109.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|
T Consensus 7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 5999999999973 4699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEeccCCccc-ccHHHHHhcCC-CC-------CCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGL-PD-------ENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~-p~-------~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
+||+|++.+|. .|++||+.++. +. ....++++.++++..++.++..+.+.
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD 142 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc
Confidence 99999999875 69999998752 11 01124568899999999887666544
No 166
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=8.2e-21 Score=191.80 Aligned_cols=121 Identities=26% Similarity=0.420 Sum_probs=104.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++|++|+|.+ . +||+||||+|++|+.+|||||+|||||||+|+++|+.+|++|+|.++|.+.++... +..|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 5999999999963 3 59999999999999999999999999999999999999999999999998776654 5789
Q ss_pred EEEeccC---CcccccHHHHHhcCCCCC--------CCCHHHHHHHHHHcCcHHHHhc
Q 005561 617 SIVNQEP---VLFSVSVGENIAYGLPDE--------NVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 617 a~V~Qd~---~LF~gTIreNI~lG~p~~--------~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
|||||.. +=|.-||+|=+.+|+... ..+.+++.+|++.+++.++..+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r 135 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR 135 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC
Confidence 9999965 568899999999985321 1235899999999999987653
No 167
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=7.1e-21 Score=199.46 Aligned_cols=127 Identities=31% Similarity=0.509 Sum_probs=104.7
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCC--CChHHhhhc
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT--FDKSEWARV 615 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~--i~~~~lR~~ 615 (691)
|+++||+++|+. ..++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999962 3469999999999999999999999999999999999999999999999999852 234568899
Q ss_pred eEEEeccC--CcccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCc
Q 005561 616 VSIVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 616 Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~ 666 (691)
|+||+|++ .+|+.|++|||.++......+ .+++.++++..++.++....|.
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 136 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPH 136 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChh
Confidence 99999998 578999999998763211112 2557788899998776655443
No 168
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.84 E-value=8.2e-21 Score=194.71 Aligned_cols=124 Identities=28% Similarity=0.450 Sum_probs=105.1
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++|+|++ .++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999877653 478899
Q ss_pred EEeccCCcccc-cHHHHHhcCCCCCC----CCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 618 IVNQEPVLFSV-SVGENIAYGLPDEN----VSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 618 ~V~Qd~~LF~g-TIreNI~lG~p~~~----~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
||+|++.+|.+ |++||+.++..... ..++++.++++..++.++..+.+.
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN 129 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChh
Confidence 99999999975 99999988642111 124567888999999877766543
No 169
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.1e-20 Score=190.27 Aligned_cols=125 Identities=32% Similarity=0.472 Sum_probs=105.1
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|++ .. .|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 578999999963 22 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEeccCCcccc-cHHHHHhcCCC-C---CCCCHHHHHHHHHHcCcHHHHhcCCcccc
Q 005561 618 IVNQEPVLFSV-SVGENIAYGLP-D---ENVSKDDIIKAAKAANAHDFIISLPQVWL 669 (691)
Q Consensus 618 ~V~Qd~~LF~g-TIreNI~lG~p-~---~~~sdeeI~~Al~~A~l~dfI~~LP~Gyd 669 (691)
||+|++.+|.+ |++||+.++.. . ...+++++.++++..++.++..+.|..+-
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 130 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELS 130 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCC
Confidence 99999999975 99999987632 1 01235678999999999988887776443
No 170
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=8.3e-21 Score=196.79 Aligned_cols=126 Identities=21% Similarity=0.343 Sum_probs=103.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHh-hhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~l-R~~ 615 (691)
-|+++||+++|+ +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 489999999996 3469999999999999999999999999999999999999999999999999988876655 456
Q ss_pred eEEEeccCCcccc-cHHHHHhcCCCC----------------CC---CCHHHHHHHHHHcCcHHHHhcCC
Q 005561 616 VSIVNQEPVLFSV-SVGENIAYGLPD----------------EN---VSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 616 Ia~V~Qd~~LF~g-TIreNI~lG~p~----------------~~---~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
++||+|++.+|.+ |++|||.++... .. ...+++.++++..++.++...-+
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 151 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA 151 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh
Confidence 9999999999986 999999986310 00 01234666777888866555433
No 171
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.84 E-value=8.4e-21 Score=194.49 Aligned_cols=122 Identities=28% Similarity=0.478 Sum_probs=100.6
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|+ +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 68999999996 246999999999999999999999999999999999999999999999999998776544 46899
Q ss_pred EEeccCCc-ccccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhc
Q 005561 618 IVNQEPVL-FSVSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 618 ~V~Qd~~L-F~gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~ 663 (691)
|++|++.+ ++.|++||+.++...... .++++.++++..++.+....
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 128 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADD 128 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcC
Confidence 99999988 578999999875321111 23456777888887654433
No 172
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.84 E-value=5.9e-21 Score=199.46 Aligned_cols=126 Identities=25% Similarity=0.452 Sum_probs=104.0
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH---Hhh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EWA 613 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~---~lR 613 (691)
-|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.. .+|
T Consensus 7 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 489999999996 34699999999999999999999999999999999999999999999999998877643 457
Q ss_pred hceEEEeccCCcccc-cHHHHHhcCCCC-CCCC----HHHHHHHHHHcCcHHHHhcCC
Q 005561 614 RVVSIVNQEPVLFSV-SVGENIAYGLPD-ENVS----KDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~g-TIreNI~lG~p~-~~~s----deeI~~Al~~A~l~dfI~~LP 665 (691)
+.++||+|++.+|.+ |++||+.++... ...+ ++++.++++..++.+.....|
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 141 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP 141 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh
Confidence 889999999999986 999999864211 0112 245667888888876554433
No 173
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=6.8e-21 Score=194.68 Aligned_cols=126 Identities=34% Similarity=0.493 Sum_probs=107.2
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++|+|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 468999999963 469999999999999999999999999999999999999999999999999987664 367899
Q ss_pred EEeccCCcccc-cHHHHHhcCCCC----CCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 618 IVNQEPVLFSV-SVGENIAYGLPD----ENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 618 ~V~Qd~~LF~g-TIreNI~lG~p~----~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
||+|++.+|.+ |++||+.++... ....++++.++++..++++++...|..+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l 131 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQL 131 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 99999999975 999999875211 1123467888999999999888877544
No 174
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=4.4e-21 Score=198.28 Aligned_cols=121 Identities=32% Similarity=0.476 Sum_probs=102.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCCCChHH
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTFDKSE 611 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~i~~~~ 611 (691)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3899999999963 4699999999999999999999999999999999999984 6999999999999888888
Q ss_pred hhhceEEEeccCCcc-cccHHHHHhcCCCCC------CCCHHHHHHHHHHcCcHHH
Q 005561 612 WARVVSIVNQEPVLF-SVSVGENIAYGLPDE------NVSKDDIIKAAKAANAHDF 660 (691)
Q Consensus 612 lR~~Ia~V~Qd~~LF-~gTIreNI~lG~p~~------~~sdeeI~~Al~~A~l~df 660 (691)
+|+.|+||+|++.+| +.|++||+.++.... ...++++.++++..++.+.
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 135 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDE 135 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999755 689999998753110 1123567888999888553
No 175
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.84 E-value=1.2e-20 Score=189.55 Aligned_cols=120 Identities=24% Similarity=0.355 Sum_probs=101.7
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||++.|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. . .+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 789999999962 468999999999999999999999999999999999999999999999998753 2 2888999
Q ss_pred EEeccCCcc-cccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhc
Q 005561 618 IVNQEPVLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 618 ~V~Qd~~LF-~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
||+|++.++ +.|++||+.+........++++.++++..++.++...
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 123 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL 123 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcC
Confidence 999888775 6899999987532112346779999999999876543
No 176
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=8.5e-21 Score=206.41 Aligned_cols=127 Identities=28% Similarity=0.490 Sum_probs=108.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+++|+ +..+|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++. .++.|
T Consensus 19 ~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred eEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 599999999996 2468999999999999999999999999999999999999999999999999987653 57899
Q ss_pred EEEeccCCcccc-cHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCccc
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
+||+|++.||.. ||+|||.|+......+ ++++.++++..++.++.++.|..+
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~L 150 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQL 150 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhC
Confidence 999999999965 9999999874211122 356788899999988887777644
No 177
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.2e-20 Score=199.09 Aligned_cols=123 Identities=28% Similarity=0.461 Sum_probs=99.9
Q ss_pred cCcEEEEeeEEECCCCC--CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCC----C-
Q 005561 535 SGDICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT----F- 607 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~--~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~----i- 607 (691)
.+.|+++|++++|+++. ..++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+ .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999997421 1359999999999999999999999999999999999999999999999998752 2
Q ss_pred ChHHhhhceEEEeccC--CcccccHHHHHhcCCCCCCCCH----HHHHHHHHHcCc
Q 005561 608 DKSEWARVVSIVNQEP--VLFSVSVGENIAYGLPDENVSK----DDIIKAAKAANA 657 (691)
Q Consensus 608 ~~~~lR~~Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~sd----eeI~~Al~~A~l 657 (691)
+...+|+.|+||+|++ .+|..|++|||.++......+. +++.++++..++
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L 139 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL 139 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 3567888999999998 5788999999988632111222 335566777777
No 178
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.84 E-value=7.1e-21 Score=197.56 Aligned_cols=123 Identities=23% Similarity=0.357 Sum_probs=103.3
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC--------
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF-------- 607 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i-------- 607 (691)
+.|+++||+|+|+ +..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 4699999999996 24699999999999999999999999999999999999999999999999988642
Q ss_pred -----ChHHhhhceEEEeccCCccc-ccHHHHHhcCC-----CCCCCCHHHHHHHHHHcCcHHHH
Q 005561 608 -----DKSEWARVVSIVNQEPVLFS-VSVGENIAYGL-----PDENVSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 608 -----~~~~lR~~Ia~V~Qd~~LF~-gTIreNI~lG~-----p~~~~sdeeI~~Al~~A~l~dfI 661 (691)
....+|+.++||+|++.+|. .|++||+.++. .+....++++.++++..++.++.
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 145 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA 145 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh
Confidence 13567889999999999997 49999998641 11011245678889999987764
No 179
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.84 E-value=1.2e-20 Score=190.21 Aligned_cols=124 Identities=32% Similarity=0.581 Sum_probs=105.0
Q ss_pred EEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEE
Q 005561 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (691)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~ 618 (691)
+++||+++|+. +++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+|+.++|
T Consensus 2 ~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 2 ALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred eEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 68999999951 468999999999999999999999999999999999999999999999987654 46789999
Q ss_pred EeccCCcccc-cHHHHHhcCC-CC---CCCCHHHHHHHHHHcCcHHHHhcCCcccc
Q 005561 619 VNQEPVLFSV-SVGENIAYGL-PD---ENVSKDDIIKAAKAANAHDFIISLPQVWL 669 (691)
Q Consensus 619 V~Qd~~LF~g-TIreNI~lG~-p~---~~~sdeeI~~Al~~A~l~dfI~~LP~Gyd 669 (691)
|+|++.+|.+ |++||+.++. +. ....++++.++++..++.+...+.|..+-
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 130 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLS 130 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCC
Confidence 9999999975 9999998642 11 11235678889999999988888776543
No 180
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=5.1e-21 Score=198.14 Aligned_cols=121 Identities=27% Similarity=0.364 Sum_probs=101.0
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCC--CCCh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLR--TFDK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~--~i~~ 609 (691)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 4699999999999999999999999999999999999997 4999999999987 4566
Q ss_pred HHhhhceEEEeccCCcccc-cHHHHHhcCCCCC------CCCHHHHHHHHHHcCcHHH
Q 005561 610 SEWARVVSIVNQEPVLFSV-SVGENIAYGLPDE------NVSKDDIIKAAKAANAHDF 660 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~g-TIreNI~lG~p~~------~~sdeeI~~Al~~A~l~df 660 (691)
..+|++++||+|++.+|.+ |++||+.++.... +..++++.++++..++.++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 138 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE 138 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc
Confidence 6788999999999999975 9999998752100 0123457788888887543
No 181
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=6.5e-21 Score=190.65 Aligned_cols=99 Identities=23% Similarity=0.430 Sum_probs=89.9
Q ss_pred EEEEeeEEECCCC-CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC---CCCCeEEECCccCCCCChHHhh
Q 005561 538 ICLEDVYFSYPLR-PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE---PTGGRITVGGEDLRTFDKSEWA 613 (691)
Q Consensus 538 I~f~nVsF~Y~~~-~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~---p~~G~I~IdG~di~~i~~~~lR 613 (691)
+.++||+|.|+.+ .+.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.+.+ ...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999853 35679999999999999999999999999999999999999 89999999999988765 4678
Q ss_pred hceEEEeccCCccc-ccHHHHHhcC
Q 005561 614 RVVSIVNQEPVLFS-VSVGENIAYG 637 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~-gTIreNI~lG 637 (691)
+.++||+|++.+|. .||+|||.++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~ 107 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFA 107 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhh
Confidence 89999999998887 4999999875
No 182
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.84 E-value=9.8e-21 Score=195.70 Aligned_cols=122 Identities=31% Similarity=0.482 Sum_probs=101.9
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCC--CC
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--FD 608 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~--i~ 608 (691)
|.|+++||+++|++ .++++|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46999999999963 4699999999999999999999999999999999999873 69999999999875 45
Q ss_pred hHHhhhceEEEeccCCcccccHHHHHhcCCCCCC-----CCHHHHHHHHHHcCcHHH
Q 005561 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-----VSKDDIIKAAKAANAHDF 660 (691)
Q Consensus 609 ~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~-----~sdeeI~~Al~~A~l~df 660 (691)
...+|+.++||+|++.+|+.|++||+.++..... ..++++.++++.+++.+.
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 135 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE 135 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh
Confidence 5678999999999999999999999988631111 124567778888887543
No 183
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.84 E-value=1.4e-20 Score=193.51 Aligned_cols=123 Identities=26% Similarity=0.412 Sum_probs=103.4
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHh-hhce
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARVV 616 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~l-R~~I 616 (691)
|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+.... |+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999962 469999999999999999999999999999999999999999999999999988876654 5679
Q ss_pred EEEeccCCcccc-cHHHHHhcCCCCC------------CCCHHHHHHHHHHcCcHHHHhc
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGLPDE------------NVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~p~~------------~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
+|++|++.+|.+ |++||+.++.... +..++++.++++..++.+....
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 139 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADR 139 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcC
Confidence 999999999987 9999998863210 0124567788888888665443
No 184
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.84 E-value=6.6e-21 Score=205.68 Aligned_cols=115 Identities=26% Similarity=0.419 Sum_probs=101.7
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHh----hhceEEEeccCCccc-
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW----ARVVSIVNQEPVLFS- 627 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~l----R~~Ia~V~Qd~~LF~- 627 (691)
..+|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++||.++.+++..++ |++|+||+|++.||.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 468999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred ccHHHHHhcCCCCCC----CCHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 628 VSVGENIAYGLPDEN----VSKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 628 gTIreNI~lG~p~~~----~sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
.||+|||.++..... ..++++.++++.+++++++.+.|.-
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~ 129 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDE 129 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhh
Confidence 599999998632111 1346788999999999988887753
No 185
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=6e-21 Score=197.39 Aligned_cols=119 Identities=33% Similarity=0.487 Sum_probs=99.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCC--CCh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FDK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~--i~~ 609 (691)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999998864 345
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCC-----CCCHHHHHHHHHHcCcH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDE-----NVSKDDIIKAAKAANAH 658 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~-----~~sdeeI~~Al~~A~l~ 658 (691)
..+|+.++||+|++.+|+.|++||+.++.... +..++++.++++..+++
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 134 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIW 134 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCC
Confidence 57788999999999999999999998763211 11234567778888874
No 186
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.84 E-value=5.9e-21 Score=187.08 Aligned_cols=95 Identities=37% Similarity=0.669 Sum_probs=87.7
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++|+|+++ +.++++|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.++ ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999742 24699999999999999999999999999999999999999999999999988776 667889999
Q ss_pred EEeccCCcccccHHHHH
Q 005561 618 IVNQEPVLFSVSVGENI 634 (691)
Q Consensus 618 ~V~Qd~~LF~gTIreNI 634 (691)
||+|++.+|+.|++|||
T Consensus 79 ~~~q~~~~~~~tv~~~i 95 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL 95 (178)
T ss_pred EEccCCeeecccHHHhh
Confidence 99999999999999998
No 187
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=1.2e-20 Score=197.44 Aligned_cols=123 Identities=28% Similarity=0.451 Sum_probs=101.6
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCC--CCChHHhhhc
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR--TFDKSEWARV 615 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~--~i~~~~lR~~ 615 (691)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. +.+...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999962 46999999999999999999999999999999999999999999999999985 3345678899
Q ss_pred eEEEeccCC--cccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhc
Q 005561 616 VSIVNQEPV--LFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 616 Ia~V~Qd~~--LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~ 663 (691)
|+||+|++. +|..|+.||+.++......+ ++++.++++..++.++...
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 132 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQ 132 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcC
Confidence 999999985 67889999998742111112 2456678888888776544
No 188
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.84 E-value=1.5e-20 Score=194.46 Aligned_cols=122 Identities=26% Similarity=0.407 Sum_probs=101.0
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC-----CCeEEECCccCCCC--Ch
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT-----GGRITVGGEDLRTF--DK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~-----~G~I~IdG~di~~i--~~ 609 (691)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+. +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 46999999999999999999999999999999999999997 69999999998653 45
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCCCC-----CHHHHHHHHHHcCcHHHH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-----SKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~-----sdeeI~~Al~~A~l~dfI 661 (691)
..+|+.++||+|++.+|..|++|||.++...... .++.+.++++..++.+++
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l 137 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV 137 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh
Confidence 6789999999999999999999999886321001 124456667777775544
No 189
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.6e-20 Score=195.16 Aligned_cols=122 Identities=25% Similarity=0.375 Sum_probs=100.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC--C---CCCeEEECCccCCC--CCh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE--P---TGGRITVGGEDLRT--FDK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~--p---~~G~I~IdG~di~~--i~~ 609 (691)
-|+++||+|+|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5999999999962 469999999999999999999999999999999999997 3 59999999999864 445
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCCC-CC----HHHHHHHHHHcCcHHHH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-VS----KDDIIKAAKAANAHDFI 661 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~-~s----deeI~~Al~~A~l~dfI 661 (691)
..+|+.|+||+|++.+|.+|++||+.++..... .+ ++++.++++..++.+++
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 145 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV 145 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh
Confidence 678899999999999999999999987632111 12 23466678888876543
No 190
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.83 E-value=1.9e-20 Score=190.63 Aligned_cols=128 Identities=26% Similarity=0.440 Sum_probs=99.3
Q ss_pred EEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh---HHhh
Q 005561 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK---SEWA 613 (691)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~---~~lR 613 (691)
|+++||+|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996321 1269999999999999999999999999999999999999999999999999988774 5788
Q ss_pred hceEEEeccC--Ccc-cccHHHHHhcCCCC--CCCCHHH---H-HHHHHHcCcH-HHHhcCC
Q 005561 614 RVVSIVNQEP--VLF-SVSVGENIAYGLPD--ENVSKDD---I-IKAAKAANAH-DFIISLP 665 (691)
Q Consensus 614 ~~Ia~V~Qd~--~LF-~gTIreNI~lG~p~--~~~sdee---I-~~Al~~A~l~-dfI~~LP 665 (691)
++++||+|++ .++ +.|++|||.++... ....+++ + .++++..++. ++....|
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc
Confidence 9999999999 344 57999999764211 0111221 1 3566777773 4544433
No 191
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.4e-20 Score=193.36 Aligned_cols=122 Identities=21% Similarity=0.310 Sum_probs=101.4
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH-hhhce
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARVV 616 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~-lR~~I 616 (691)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +|+.+
T Consensus 4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 889999999962 46999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred EEEeccCCcccc-cHHHHHhcCCCCC-CCC----HHHHHHHHHHcCcHHHHh
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGLPDE-NVS----KDDIIKAAKAANAHDFII 662 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~p~~-~~s----deeI~~Al~~A~l~dfI~ 662 (691)
+||+|++.+|.+ |++||+.++.... ..+ ++.+.+.++..++.+...
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 132 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD 132 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhh
Confidence 999999999985 9999998752110 111 345667777777765443
No 192
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=9.8e-21 Score=196.04 Aligned_cols=120 Identities=28% Similarity=0.401 Sum_probs=100.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCCC--Ch
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTF--DK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~i--~~ 609 (691)
-|+++||+|+|+ +.++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||+++.+. +.
T Consensus 6 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYG---EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEEC---CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 499999999996 34699999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCC-----CCCHHHHHHHHHHcCcHH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDE-----NVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~-----~~sdeeI~~Al~~A~l~d 659 (691)
...|+.|+||+|++.+|++|++|||.++.... ...++++.++++.+++.+
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 137 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD 137 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch
Confidence 67788999999999999999999999863210 012345677788877744
No 193
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=8.9e-21 Score=197.06 Aligned_cols=124 Identities=27% Similarity=0.427 Sum_probs=102.6
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCC--CC
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--FD 608 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~--i~ 608 (691)
+.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999962 4699999999999999999999999999999999999985 48999999998864 44
Q ss_pred hHHhhhceEEEeccCCcccccHHHHHhcCCCC----CCCC-HHHHHHHHHHcCcHHHHh
Q 005561 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPD----ENVS-KDDIIKAAKAANAHDFII 662 (691)
Q Consensus 609 ~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~----~~~s-deeI~~Al~~A~l~dfI~ 662 (691)
...+|+.|+||+|++.+|+.|++||+.++... ++.+ ++.+.++++.+++.+++.
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~ 141 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK 141 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh
Confidence 56788999999999999999999999875211 1111 345678888888865443
No 194
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.83 E-value=4.3e-21 Score=178.18 Aligned_cols=110 Identities=29% Similarity=0.518 Sum_probs=96.3
Q ss_pred CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHH
Q 005561 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (691)
Q Consensus 552 ~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIr 631 (691)
+.++|+|+||++.+||++||.||||||||||+|.++-+..|++|++++.|.|+++++.+.+|++|+|+.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC--CCCCCCHHHHHHHHHHcCcHHHH
Q 005561 632 ENIAYGL--PDENVSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 632 eNI~lG~--p~~~~sdeeI~~Al~~A~l~dfI 661 (691)
||+-|-- .+...+.+...+-++.+++.+.+
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~ 126 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSI 126 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchhh
Confidence 9998731 01123445566777777776654
No 195
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=1.6e-20 Score=192.52 Aligned_cols=99 Identities=29% Similarity=0.497 Sum_probs=90.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH-hhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~-lR~~ 615 (691)
-|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999962 46999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eEEEeccCCcccc-cHHHHHhcCC
Q 005561 616 VSIVNQEPVLFSV-SVGENIAYGL 638 (691)
Q Consensus 616 Ia~V~Qd~~LF~g-TIreNI~lG~ 638 (691)
++||+|++.+|.+ |++||+.++.
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~ 105 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGG 105 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhh
Confidence 9999999999985 9999999864
No 196
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.2e-20 Score=197.57 Aligned_cols=124 Identities=27% Similarity=0.428 Sum_probs=103.7
Q ss_pred cCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCC--C
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--F 607 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~--i 607 (691)
.+.|+++||+|+|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999962 4699999999999999999999999999999999999984 89999999999865 3
Q ss_pred ChHHhhhceEEEeccCCcccccHHHHHhcCCCCCC-----CCHHHHHHHHHHcCcHHHH
Q 005561 608 DKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-----VSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 608 ~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~-----~sdeeI~~Al~~A~l~dfI 661 (691)
+...+|+.++||+|++.+|.+|++|||.++..... ..++++.++++.+++.+++
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 158 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV 158 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH
Confidence 45678999999999999999999999987632111 1234578888888886543
No 197
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.1e-20 Score=197.12 Aligned_cols=129 Identities=30% Similarity=0.463 Sum_probs=104.1
Q ss_pred EEEEeeEEECCCCC--CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC----ChHH
Q 005561 538 ICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF----DKSE 611 (691)
Q Consensus 538 I~f~nVsF~Y~~~~--~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i----~~~~ 611 (691)
|+++||+++|+++. ..++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996311 14699999999999999999999999999999999999999999999999998654 3456
Q ss_pred hhhceEEEeccC--CcccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcH-HHHhcCCc
Q 005561 612 WARVVSIVNQEP--VLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAH-DFIISLPQ 666 (691)
Q Consensus 612 lR~~Ia~V~Qd~--~LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~-dfI~~LP~ 666 (691)
.|+.|+||+|++ .+|..|++|||.++......+ ++.+.++++..++. ++....+.
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 144 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPF 144 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcc
Confidence 788999999998 688899999998753211122 23567888888885 55544333
No 198
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.4e-20 Score=190.62 Aligned_cols=123 Identities=34% Similarity=0.556 Sum_probs=104.0
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+++|+. . ..|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999962 2 249999999999999999999999999999999999999999999999887654 357899
Q ss_pred EEeccCCcccc-cHHHHHhcCC-CC---CCCCHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 618 IVNQEPVLFSV-SVGENIAYGL-PD---ENVSKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 618 ~V~Qd~~LF~g-TIreNI~lG~-p~---~~~sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
||+|++.+|.+ |++|||.++. +. ....++++.++++..++.+++.+.|..
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 129 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQ 129 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCccc
Confidence 99999999985 9999998753 11 112356789999999999888877653
No 199
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=1.8e-20 Score=193.95 Aligned_cols=123 Identities=24% Similarity=0.400 Sum_probs=101.7
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC--C---CCCeEEECCccCCCC--C
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE--P---TGGRITVGGEDLRTF--D 608 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~--p---~~G~I~IdG~di~~i--~ 608 (691)
|.|+++|++|+|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|.+||.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999962 469999999999999999999999999999999999986 4 689999999998653 4
Q ss_pred hHHhhhceEEEeccCCccc-ccHHHHHhcCCC-----CCCCCHHHHHHHHHHcCcHHHH
Q 005561 609 KSEWARVVSIVNQEPVLFS-VSVGENIAYGLP-----DENVSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 609 ~~~lR~~Ia~V~Qd~~LF~-gTIreNI~lG~p-----~~~~sdeeI~~Al~~A~l~dfI 661 (691)
...+|+.|+||+|++.+|. .|++|||.++.. +....++++.++++..++.+++
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 138 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV 138 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh
Confidence 4567899999999999998 599999987521 1111234577888888886544
No 200
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.83 E-value=2.1e-20 Score=195.31 Aligned_cols=123 Identities=28% Similarity=0.367 Sum_probs=105.0
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC--------CCeEEECCccCCCCCh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT--------GGRITVGGEDLRTFDK 609 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~--------~G~I~IdG~di~~i~~ 609 (691)
|+++|++++|+ +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|+ +|+|.+||.++.+++.
T Consensus 2 l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARR---HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEEC---CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 78999999996 246999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHhhhceEEEeccCC-cccccHHHHHhcCCCCC--------CCCHHHHHHHHHHcCcHHHHhc
Q 005561 610 SEWARVVSIVNQEPV-LFSVSVGENIAYGLPDE--------NVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~-LF~gTIreNI~lG~p~~--------~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
..+++.++||+|++. +|+.|++|||.++.... ...++.+.++++..++.+...+
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 141 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR 141 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC
Confidence 888899999999986 67899999998863110 0123457888999998776543
No 201
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-20 Score=193.41 Aligned_cols=122 Identities=34% Similarity=0.480 Sum_probs=101.9
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCCC--ChH
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRTF--DKS 610 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~i--~~~ 610 (691)
|+++||+++|+ +.++|+|+||+|++||.++|+|++|||||||+++|+|+.+ |++|+|.+||.++.+. +..
T Consensus 4 l~~~~v~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 4 IEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEeEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 88999999996 2469999999999999999999999999999999999975 4899999999998753 456
Q ss_pred HhhhceEEEeccCCcccccHHHHHhcCCCCCC-----CCHHHHHHHHHHcCcHHHHh
Q 005561 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-----VSKDDIIKAAKAANAHDFII 662 (691)
Q Consensus 611 ~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~-----~sdeeI~~Al~~A~l~dfI~ 662 (691)
.+|+.++||+|++.+|++|++|||.++..... ..++++.++++.+++.+++.
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~ 137 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH
Confidence 78999999999999999999999987631111 12345677888888866553
No 202
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.4e-20 Score=184.51 Aligned_cols=96 Identities=36% Similarity=0.594 Sum_probs=88.4
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC--hHHhhhc
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD--KSEWARV 615 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~--~~~lR~~ 615 (691)
|+++|++++|++ .++++|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.+||.++.+++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 478999999963 46999999999999999999999999999999999999999999999999998876 5678899
Q ss_pred eEEEeccCCccc-ccHHHHHhc
Q 005561 616 VSIVNQEPVLFS-VSVGENIAY 636 (691)
Q Consensus 616 Ia~V~Qd~~LF~-gTIreNI~l 636 (691)
++|++|++.+|. .|++||+.+
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred EEEEecCCccCCCCCHHHheee
Confidence 999999999986 599999975
No 203
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.83 E-value=1.7e-20 Score=193.78 Aligned_cols=123 Identities=25% Similarity=0.328 Sum_probs=100.5
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC--------h
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD--------K 609 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~--------~ 609 (691)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 46999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHhhhceEEEeccCCccc-ccHHHHHhcCCC-CCCCC----HHHHHHHHHHcCcHHHHhc
Q 005561 610 SEWARVVSIVNQEPVLFS-VSVGENIAYGLP-DENVS----KDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~-gTIreNI~lG~p-~~~~s----deeI~~Al~~A~l~dfI~~ 663 (691)
..+|+.++||+|++.+|. .|++||+.++.. ..... ++++.++++..++.+....
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 140 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETS 140 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhC
Confidence 567889999999999985 699999986411 00111 2456677777787655433
No 204
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.3e-20 Score=195.15 Aligned_cols=98 Identities=31% Similarity=0.470 Sum_probs=89.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCC--CCh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FDK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~--i~~ 609 (691)
-|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 469999999999999999999999999999999999997 699999999999853 455
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcC
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYG 637 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG 637 (691)
..+|+.++||+|++.+|..|++|||.++
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~ 128 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYG 128 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHH
Confidence 6788999999999999999999999875
No 205
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.2e-20 Score=194.59 Aligned_cols=123 Identities=27% Similarity=0.407 Sum_probs=102.3
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCC--CCh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FDK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~--i~~ 609 (691)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4999999999962 469999999999999999999999999999999999987 479999999998853 455
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCCC---CCHHHHHHHHHHcCcHHHHh
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN---VSKDDIIKAAKAANAHDFII 662 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~---~sdeeI~~Al~~A~l~dfI~ 662 (691)
..+|++|+||+|++.+|+.|++|||.++..... ..++++.++++.+++.+++.
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~ 142 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK 142 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH
Confidence 678899999999999999999999998632111 12355677788888865543
No 206
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.83 E-value=2.2e-20 Score=194.78 Aligned_cols=121 Identities=27% Similarity=0.448 Sum_probs=99.9
Q ss_pred EEEEeeEEECCCC------CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH
Q 005561 538 ICLEDVYFSYPLR------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE 611 (691)
Q Consensus 538 I~f~nVsF~Y~~~------~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~ 611 (691)
|+++||+|+|++. .+.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+++..+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1357999999999999999999999999999999999999999999999999998877543
Q ss_pred ---hhhceEEEeccCC--cc-cccHHHHHhcCC-----CCCCCCHHHHHHHHHHcCcH
Q 005561 612 ---WARVVSIVNQEPV--LF-SVSVGENIAYGL-----PDENVSKDDIIKAAKAANAH 658 (691)
Q Consensus 612 ---lR~~Ia~V~Qd~~--LF-~gTIreNI~lG~-----p~~~~sdeeI~~Al~~A~l~ 658 (691)
+|+.|+||+|++. ++ ..|++|||.++. ......++++.++++..++.
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 140 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLR 140 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 6788999999983 44 479999996531 11112346788889998885
No 207
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.4e-20 Score=194.48 Aligned_cols=124 Identities=28% Similarity=0.398 Sum_probs=103.2
Q ss_pred cCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCC----
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLR---- 605 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~---- 605 (691)
.+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 467999999999962 4699999999999999999999999999999999999985 7999999998874
Q ss_pred CCChHHhhhceEEEeccCCcccccHHHHHhcCCCC-----CCCCHHHHHHHHHHcCcHHHH
Q 005561 606 TFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD-----ENVSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 606 ~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~-----~~~sdeeI~~Al~~A~l~dfI 661 (691)
+.+...+|+.|+|++|++.+|.+|++|||.++... ....++++.++++.+++.+.+
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l 151 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhh
Confidence 33456788999999999999999999999875210 012346778888888875433
No 208
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=1.9e-20 Score=182.66 Aligned_cols=95 Identities=28% Similarity=0.539 Sum_probs=87.3
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
++++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 468999999963 36999999999999999999999999999999999999999999999999988766 67788999
Q ss_pred EEeccCCcccc-cHHHHHhc
Q 005561 618 IVNQEPVLFSV-SVGENIAY 636 (691)
Q Consensus 618 ~V~Qd~~LF~g-TIreNI~l 636 (691)
||+|++.+|.+ |++||+.+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~L 96 (173)
T cd03230 77 YLPEEPSLYENLTVRENLKL 96 (173)
T ss_pred EEecCCccccCCcHHHHhhc
Confidence 99999999987 99999864
No 209
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.83 E-value=2.9e-20 Score=192.62 Aligned_cols=121 Identities=26% Similarity=0.351 Sum_probs=100.5
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 4699999999999999999999999999999999999999999999999988643 24689
Q ss_pred EEeccCCccc-ccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCc
Q 005561 618 IVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
||+|++.+|. .|++||+.++...... .++++.++++..++.+...+.|.
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 127 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIW 127 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChh
Confidence 9999999987 6999999875211111 23567888999999876655443
No 210
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.6e-20 Score=192.60 Aligned_cols=121 Identities=29% Similarity=0.383 Sum_probs=101.1
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCCC--Ch
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTF--DK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~i--~~ 609 (691)
.|+++||+++|++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999962 4699999999999999999999999999999999999986 799999999998653 34
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCCC-----CCHHHHHHHHHHcCcHHH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN-----VSKDDIIKAAKAANAHDF 660 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~-----~sdeeI~~Al~~A~l~df 660 (691)
..+|+.++||+|++.+|+.|++||+.++..... ..++++.++++.+++.+.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 136 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDE 136 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchh
Confidence 567889999999999999999999987631111 113456788888887543
No 211
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=3e-20 Score=194.03 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=99.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCC--CCh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FDK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~--i~~ 609 (691)
-|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999962 469999999999999999999999999999999999875 799999999999865 344
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCC-----CCCHHHHHHHHHHcCcH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDE-----NVSKDDIIKAAKAANAH 658 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~-----~~sdeeI~~Al~~A~l~ 658 (691)
..+|+.++||+|++.+|.+|++||+.++.... ...++.+.++++..++.
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 151 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW 151 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC
Confidence 57788999999999999999999998752110 01234577788888774
No 212
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.4e-20 Score=193.01 Aligned_cols=120 Identities=31% Similarity=0.508 Sum_probs=99.2
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcC--CC---CCCeEEECCccCCCC--Ch
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY--EP---TGGRITVGGEDLRTF--DK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly--~p---~~G~I~IdG~di~~i--~~ 609 (691)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|++ .| ++|+|.+||+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 46999999999999999999999999999999999995 46 499999999998643 34
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCC-----CCCCCHHHHHHHHHHcCcHH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLP-----DENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p-----~~~~sdeeI~~Al~~A~l~d 659 (691)
..+|+.++||+|++.+|+.|++||+.++.. .....++++.++++.+++.+
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 136 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD 136 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch
Confidence 578899999999999999999999987521 11112355677888888644
No 213
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4e-20 Score=196.54 Aligned_cols=122 Identities=30% Similarity=0.467 Sum_probs=102.4
Q ss_pred cCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCCC--
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRTF-- 607 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~i-- 607 (691)
+..|+++||+++|++ .++|+|+||+|++||.++|+|++|||||||+++|+|+++ |++|+|.+||.++.+.
T Consensus 43 ~~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 43 DAKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 346999999999963 469999999999999999999999999999999999996 6899999999998653
Q ss_pred ChHHhhhceEEEeccCCcccccHHHHHhcCCCC-----------------CCCCHHHHHHHHHHcCcHH
Q 005561 608 DKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD-----------------ENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 608 ~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~-----------------~~~sdeeI~~Al~~A~l~d 659 (691)
+...+|+.|+||+|++.+|++||+|||.++... ....++++.++++.+++.+
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 188 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD 188 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch
Confidence 456788999999999999999999999976311 0112456778888888754
No 214
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.83 E-value=2.6e-20 Score=197.95 Aligned_cols=123 Identities=29% Similarity=0.256 Sum_probs=99.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.. ..+|+.|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHHhhcE
Confidence 4899999999962 46999999999999999999999999999999999999999999999999987643 5678999
Q ss_pred EEEeccCCccc-ccHHHHHhcCCCCCCCCH----HHHHHHHHHcCcHHHHhc
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGLPDENVSK----DDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~p~~~~sd----eeI~~Al~~A~l~dfI~~ 663 (691)
+||+|++.+|. .|++||+.+.......+. +++.++++..++.+....
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~ 131 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV 131 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC
Confidence 99999999985 699999975211101222 345566777777654443
No 215
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2.7e-20 Score=193.29 Aligned_cols=119 Identities=30% Similarity=0.475 Sum_probs=99.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCCCC--h
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTFD--K 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~i~--~ 609 (691)
.|+++||+++|+ +.++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.+||.++.+.+ .
T Consensus 12 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 599999999996 24699999999999999999999999999999999999985 7999999999986543 4
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAH 658 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~ 658 (691)
..+|+.++||+|++.+|..|++||+.++......+ ++++.++++.+++.
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 141 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALW 141 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence 56788999999999999999999998753111122 23567788888874
No 216
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.83 E-value=2.5e-20 Score=198.07 Aligned_cols=121 Identities=24% Similarity=0.302 Sum_probs=100.1
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+++|+ +..+|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 599999999996 246999999999999999999999999999999999999999999999999997755 4578999
Q ss_pred EEEeccCCccc-ccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHH
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFI 661 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI 661 (691)
|||+|++.+|. .|++||+.+.......+ .+++.++++..++.+..
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 132 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA 132 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh
Confidence 99999999986 69999998521111122 23455677777775543
No 217
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.83 E-value=2e-20 Score=193.33 Aligned_cols=121 Identities=25% Similarity=0.384 Sum_probs=100.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCCC--Ch
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTF--DK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~i--~~ 609 (691)
-|+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 3899999999962 4699999999999999999999999999999999999984 899999999988653 34
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCC-----CCCHHHHHHHHHHcCcHHH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDE-----NVSKDDIIKAAKAANAHDF 660 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~-----~~sdeeI~~Al~~A~l~df 660 (691)
..+|+.++|++|++.+|..|++||+.++.... ...++++.++++..++++.
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 135 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDE 135 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCch
Confidence 56788999999999999999999998753110 0123456778888887543
No 218
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.83 E-value=6.4e-20 Score=192.24 Aligned_cols=117 Identities=22% Similarity=0.397 Sum_probs=103.7
Q ss_pred cCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhh
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~ 614 (691)
.+.|+++||++.. .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||
T Consensus 37 ~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------- 98 (282)
T cd03291 37 DNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98 (282)
T ss_pred CCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------
Confidence 3569999999952 3599999999999999999999999999999999999999999999998
Q ss_pred ceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcccccch
Q 005561 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~~ 672 (691)
.|+||+|++++|++|++||+.++.. ..+.++.++++.+++.+.+..+|++++|.+
T Consensus 99 ~i~yv~q~~~l~~~tv~enl~~~~~---~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~ 153 (282)
T cd03291 99 RISFSSQFSWIMPGTIKENIIFGVS---YDEYRYKSVVKACQLEEDITKFPEKDNTVL 153 (282)
T ss_pred EEEEEeCcccccccCHHHHhhcccc---cCHHHHHHHHHHhCCHHHHHhcccccccee
Confidence 3999999999999999999998743 234567788888899999999999988754
No 219
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.83 E-value=2.3e-20 Score=198.00 Aligned_cols=124 Identities=19% Similarity=0.280 Sum_probs=104.2
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
++++|++++|+ +..+|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+ +...+|+.++
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999996 3569999999999999999999999999999999999999999999999999876 4457889999
Q ss_pred EEeccCCcccc-cHHHHHhcCCCC----CCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 618 IVNQEPVLFSV-SVGENIAYGLPD----ENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 618 ~V~Qd~~LF~g-TIreNI~lG~p~----~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
|++|++.+|.+ |++||+.+.... .+..++++.++++..++.++..+.+
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 131 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKI 131 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCch
Confidence 99999999976 999999753211 0112456788888888877654443
No 220
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3e-20 Score=191.90 Aligned_cols=122 Identities=31% Similarity=0.520 Sum_probs=101.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCC-CCChH
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLR-TFDKS 610 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~-~i~~~ 610 (691)
.|+++||+++|+ +.++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEEC---CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 488999999996 24699999999999999999999999999999999999996 5999999999885 45667
Q ss_pred HhhhceEEEeccCCcccccHHHHHhcCCCCCCC-----CHHHHHHHHHHcCcHHHH
Q 005561 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-----SKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 611 ~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~-----sdeeI~~Al~~A~l~dfI 661 (691)
.+|+.++||+|++.+|..|++|||.++...... .++++.++++.+++++.+
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV 135 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh
Confidence 889999999999999999999999876321111 134566778888875543
No 221
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.82 E-value=1.9e-20 Score=190.52 Aligned_cols=97 Identities=30% Similarity=0.460 Sum_probs=88.0
Q ss_pred EEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC---CCCCeEEECCccCCCCChHHhh
Q 005561 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE---PTGGRITVGGEDLRTFDKSEWA 613 (691)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~---p~~G~I~IdG~di~~i~~~~lR 613 (691)
++|+||+|+|+..+ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999998431 3679999999999999999999999999999999999999 99999999999875 35688
Q ss_pred hceEEEeccCCcccc-cHHHHHhcC
Q 005561 614 RVVSIVNQEPVLFSV-SVGENIAYG 637 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~g-TIreNI~lG 637 (691)
+.++||+|++.+|.+ |++|||.++
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~ 105 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYT 105 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHH
Confidence 999999999999987 999999874
No 222
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=3e-20 Score=202.88 Aligned_cols=114 Identities=26% Similarity=0.493 Sum_probs=97.3
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHh----hhceEEEeccCCccc-cc
Q 005561 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW----ARVVSIVNQEPVLFS-VS 629 (691)
Q Consensus 555 vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~l----R~~Ia~V~Qd~~LF~-gT 629 (691)
+|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++..++ |++|+||+|++.+|. .|
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999998887654 468999999999996 59
Q ss_pred HHHHHhcCCCCC----CCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 630 VGENIAYGLPDE----NVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 630 IreNI~lG~p~~----~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
++|||.++.... ...++++.++++..++.++..+.|.-+
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~L 165 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDEL 165 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccC
Confidence 999999763110 112456888999999988887776543
No 223
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3e-20 Score=194.71 Aligned_cols=120 Identities=21% Similarity=0.434 Sum_probs=100.1
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCCCC-hH
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTFD-KS 610 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~i~-~~ 610 (691)
.++++||+|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFA---GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEEC---CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 589999999996 24799999999999999999999999999999999999996 6999999999988764 45
Q ss_pred HhhhceEEEeccCCcccccHHHHHhcCCCC-CCCCHHHH----HHHHHHcCcHH
Q 005561 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPD-ENVSKDDI----IKAAKAANAHD 659 (691)
Q Consensus 611 ~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~-~~~sdeeI----~~Al~~A~l~d 659 (691)
.+|+.|+||+|++.+|+.|++|||.++... ...+++++ .++++..++.+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 151 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD 151 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc
Confidence 788999999999999999999999986321 11244443 45566677654
No 224
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=3e-20 Score=180.84 Aligned_cols=96 Identities=45% Similarity=0.754 Sum_probs=89.5
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|++. ..++++|+||+|++||.++|+|++|||||||+++|+|+++|++|+|.++|.++.+++...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999742 236899999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeccCCcccccHHHHH
Q 005561 618 IVNQEPVLFSVSVGENI 634 (691)
Q Consensus 618 ~V~Qd~~LF~gTIreNI 634 (691)
|++|++.+|+.|++||+
T Consensus 80 ~~~~~~~~~~~t~~e~l 96 (171)
T cd03228 80 YVPQDPFLFSGTIRENI 96 (171)
T ss_pred EEcCCchhccchHHHHh
Confidence 99999999999999997
No 225
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.82 E-value=3.5e-20 Score=198.58 Aligned_cols=130 Identities=25% Similarity=0.397 Sum_probs=103.9
Q ss_pred cEEEEeeEEECCCCC----------CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCC
Q 005561 537 DICLEDVYFSYPLRP----------DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT 606 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~----------~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~ 606 (691)
-|+++|++++|+.+. ...+++|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999998
Q ss_pred CChHH---hhhceEEEeccC--Ccc-cccHHHHHhcCCC--CCCCC----HHHHHHHHHHcCc-HHHHhcCCc
Q 005561 607 FDKSE---WARVVSIVNQEP--VLF-SVSVGENIAYGLP--DENVS----KDDIIKAAKAANA-HDFIISLPQ 666 (691)
Q Consensus 607 i~~~~---lR~~Ia~V~Qd~--~LF-~gTIreNI~lG~p--~~~~s----deeI~~Al~~A~l-~dfI~~LP~ 666 (691)
++.++ +|++|+||+|+| .|| ..||.|||.++.. ....+ ++.+.++++.+++ .++..+.|.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcc
Confidence 87654 678999999998 477 5799999975310 00123 3456677888888 345555443
No 226
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.82 E-value=4.7e-20 Score=191.98 Aligned_cols=128 Identities=23% Similarity=0.290 Sum_probs=106.3
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC---CCeEEECCccCCCC-----C
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTF-----D 608 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~---~G~I~IdG~di~~i-----~ 608 (691)
-|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFN---QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeC---CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 489999999996 346999999999999999999999999999999999999986 49999999988654 3
Q ss_pred hHHhhhceEEEeccCCccc-ccHHHHHhcCCCC------------CCCCHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 609 KSEWARVVSIVNQEPVLFS-VSVGENIAYGLPD------------ENVSKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 609 ~~~lR~~Ia~V~Qd~~LF~-gTIreNI~lG~p~------------~~~sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
...+|+.++||+|++.+|. .|++||+.++..+ ....++++.++++..++.+++...|..
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST 152 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence 4567889999999999987 5999999876321 011245688999999998777665543
No 227
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.82 E-value=3.7e-20 Score=183.32 Aligned_cols=115 Identities=30% Similarity=0.464 Sum_probs=95.2
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCC--CChHHhhhceEEEeccC--Ccccc
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT--FDKSEWARVVSIVNQEP--VLFSV 628 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~--i~~~~lR~~Ia~V~Qd~--~LF~g 628 (691)
..+|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.. .....+|+.++||+|++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999998852 23456788999999998 58889
Q ss_pred cHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhcCCcc
Q 005561 629 SVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 629 TIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~LP~G 667 (691)
|++|||.++......+ ++++.++++..++.++....|.-
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 127 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHC 127 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhh
Confidence 9999998752111122 34678889999998877666543
No 228
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.2e-20 Score=193.05 Aligned_cols=122 Identities=31% Similarity=0.462 Sum_probs=100.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhc---CCC--CCCeEEECCccCCCC--Ch
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF---YEP--TGGRITVGGEDLRTF--DK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gl---y~p--~~G~I~IdG~di~~i--~~ 609 (691)
.|+++||++.|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+ ++| ++|+|.+||.++.+. +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999963 4699999999999999999999999999999999997 444 589999999998764 34
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCC-----CCCHHHHHHHHHHcCcHHHH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDE-----NVSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~-----~~sdeeI~~Al~~A~l~dfI 661 (691)
..+|+.|+||+|++.+|..|++||+.++.... +..++++.++++..++.+++
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 136 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV 136 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch
Confidence 67889999999999999999999998753211 11235677888888875544
No 229
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=7.5e-20 Score=192.57 Aligned_cols=121 Identities=26% Similarity=0.413 Sum_probs=102.4
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCC--CC
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRT--FD 608 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~--i~ 608 (691)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999962 469999999999999999999999999999999999997 689999999999865 34
Q ss_pred hHHhhhceEEEeccCCcccccHHHHHhcCCCC---CCCCHHHHHHHHHHcCcHH
Q 005561 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPD---ENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 609 ~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~---~~~sdeeI~~Al~~A~l~d 659 (691)
...+|+.++||+|++.+|..|++|||.++... ....++++.++++..++.+
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 168 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD 168 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCc
Confidence 56788999999999999999999999875211 0113567888999988743
No 230
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=3.4e-20 Score=195.37 Aligned_cols=119 Identities=27% Similarity=0.384 Sum_probs=98.6
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCCC--Ch
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRTF--DK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~i--~~ 609 (691)
.|+++||+|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999963 469999999999999999999999999999999999865 4999999999988653 33
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCCCC-----CHHHHHHHHHHcCcH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDENV-----SKDDIIKAAKAANAH 658 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~-----sdeeI~~Al~~A~l~ 658 (691)
..+|+.++||+|++.+|.+|++|||.++...... .++++.++++..++.
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 169 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALW 169 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCc
Confidence 4678899999999999999999999986321011 134566778887764
No 231
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=4.9e-20 Score=188.69 Aligned_cols=124 Identities=26% Similarity=0.484 Sum_probs=105.2
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|++ .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 468999999962 27999999999999999999999999999999999999999999999999887654 378999
Q ss_pred EEeccCCccc-ccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 618 IVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
||+|++.+|. .|++||+.++...... .++++.++++..++.+++.+.|.-
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 129 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET 129 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCccc
Confidence 9999999995 7999999876422111 245678899999998888776643
No 232
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=2.1e-20 Score=193.30 Aligned_cols=120 Identities=26% Similarity=0.373 Sum_probs=100.0
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-----CCCCeEEECCccCCCCC--hH
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-----PTGGRITVGGEDLRTFD--KS 610 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-----p~~G~I~IdG~di~~i~--~~ 610 (691)
-+++||+|+|+ +.++|+|+||+|++||.++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 47899999996 2469999999999999999999999999999999999986 47999999999887654 34
Q ss_pred HhhhceEEEeccCCcccccHHHHHhcCCCC-C-----CCCHHHHHHHHHHcCcHHH
Q 005561 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPD-E-----NVSKDDIIKAAKAANAHDF 660 (691)
Q Consensus 611 ~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~-~-----~~sdeeI~~Al~~A~l~df 660 (691)
.+|+.++||+|++.+|.+|++|||.++... . ...++++.++++..++.++
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 138 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE 138 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch
Confidence 678999999999999999999999876210 0 0124567788899988653
No 233
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.82 E-value=4e-20 Score=187.78 Aligned_cols=121 Identities=20% Similarity=0.305 Sum_probs=101.0
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999962 46999999999999999999999999999999999999999999999999875322 35799
Q ss_pred EEeccCCccc-ccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 618 IVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
|++|++.+|. .|++||+.++......+++++.++++..++.+....-|
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 122 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKA 122 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhH
Confidence 9999999886 69999998642111235678899999999987655433
No 234
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=6.3e-20 Score=182.48 Aligned_cols=119 Identities=18% Similarity=0.297 Sum_probs=99.0
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++++|++ ..++ ++||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.+.+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 789999999962 3455 599999999999999999999999999999999999999999999886643 35699
Q ss_pred EEeccCC-cccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 618 IVNQEPV-LFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 618 ~V~Qd~~-LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
|++|++. +|+.|++|||.++.+.. ..++++.++++..++.++..+.+
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~ 121 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIY-NSAETLYAAIHYFKLHDLLDEKC 121 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhc-ccHHHHHHHHHHcCCHhhhccCh
Confidence 9999875 47899999998864321 24667888889999987665543
No 235
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=9.4e-20 Score=183.92 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=100.3
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+. ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4999999999963 4699999999999999999999999999999999999999999999999988753 346689
Q ss_pred EEEeccCCcccc-cHHHHHhcCCCC-CCCCHHHHHHHHHHcCcHHHHhc
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGLPD-ENVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~p~-~~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
+|++|++.+|.+ |++||+.++... ....++.+.++++..++.+....
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 133 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDT 133 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccC
Confidence 999999999986 999999765321 11134556778888887654443
No 236
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=6.3e-20 Score=190.90 Aligned_cols=123 Identities=33% Similarity=0.488 Sum_probs=102.5
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC-----CCeEEECCccCCC--CC
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT-----GGRITVGGEDLRT--FD 608 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~-----~G~I~IdG~di~~--i~ 608 (691)
+.|+++||+|+|++ ..+|+|+||+|++||.+||+|++|||||||+++|+|+++|+ +|+|.+||.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 36899999999999999999999999999999999999985 8999999998753 34
Q ss_pred hHHhhhceEEEeccCCcccccHHHHHhcCCCC----CCC-CHHHHHHHHHHcCcHHHH
Q 005561 609 KSEWARVVSIVNQEPVLFSVSVGENIAYGLPD----ENV-SKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 609 ~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~----~~~-sdeeI~~Al~~A~l~dfI 661 (691)
...+|+.++|++|++.+|..|++||+.++... ... .++++.++++..++.+++
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 140 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI 140 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh
Confidence 56788999999999999999999999875211 011 134577888888876554
No 237
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5.8e-20 Score=190.85 Aligned_cols=120 Identities=31% Similarity=0.461 Sum_probs=99.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCC--CCh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--FDK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~--i~~ 609 (691)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 4699999999999999999999999999999999999985 69999999998853 445
Q ss_pred HHhhhceEEEeccCCccc-ccHHHHHhcCCCC-----CCCCHHHHHHHHHHcCcHH
Q 005561 610 SEWARVVSIVNQEPVLFS-VSVGENIAYGLPD-----ENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~-gTIreNI~lG~p~-----~~~sdeeI~~Al~~A~l~d 659 (691)
..+|+.++||+|++.+|. .|++||+.++... ....++++.++++..++.+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 136 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN 136 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch
Confidence 678899999999999997 5999999865211 0112345677888888743
No 238
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.81 E-value=7.3e-20 Score=196.69 Aligned_cols=120 Identities=30% Similarity=0.300 Sum_probs=98.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++||+++|+ +..+|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.|
T Consensus 41 ~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 499999999996 346999999999999999999999999999999999999999999999999987654 5688999
Q ss_pred EEEeccCCcc-cccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHH
Q 005561 617 SIVNQEPVLF-SVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDF 660 (691)
Q Consensus 617 a~V~Qd~~LF-~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~df 660 (691)
+||+|++.+| +.|++||+.+.......+ .+.+.++++..++.+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~ 165 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK 165 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh
Confidence 9999999997 569999998531111112 2335566676776553
No 239
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.6e-20 Score=187.87 Aligned_cols=127 Identities=31% Similarity=0.510 Sum_probs=106.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCc---cCCCCChHHhh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE---DLRTFDKSEWA 613 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~---di~~i~~~~lR 613 (691)
.|+++|++..|+ ..++++||||+|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 378899999996 346899999999999999999999999999999999999999999999999 555533 334
Q ss_pred hceEEEeccCCcc-cccHHHHHhcCC------CCCCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 614 RVVSIVNQEPVLF-SVSVGENIAYGL------PDENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF-~gTIreNI~lG~------p~~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
++||+|.|+.-|| +-||+|||+||. |++...+.++.+-++.+++.++-++-|..+
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QL 138 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQL 138 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhc
Confidence 7899999999998 679999999996 333335567777888888888777777543
No 240
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=5e-20 Score=190.61 Aligned_cols=120 Identities=32% Similarity=0.492 Sum_probs=98.6
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC--C---CCCeEEECCccCCC--CCh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE--P---TGGRITVGGEDLRT--FDK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~--p---~~G~I~IdG~di~~--i~~ 609 (691)
-|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999962 469999999999999999999999999999999999975 5 59999999998864 345
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCC-----CCCCHHHHHHHHHHcCcHH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPD-----ENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~-----~~~sdeeI~~Al~~A~l~d 659 (691)
..+++.++||+|++.+|..|++||+.++... .+..++++.++++.+++.+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 136 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD 136 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc
Confidence 5778899999999999999999999875211 0112345667777777643
No 241
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.81 E-value=5.8e-20 Score=189.03 Aligned_cols=118 Identities=29% Similarity=0.362 Sum_probs=97.7
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhc--CCCCCCeEEECCccCCCCChHHh-hh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--YEPTGGRITVGGEDLRTFDKSEW-AR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gl--y~p~~G~I~IdG~di~~i~~~~l-R~ 614 (691)
|+++||+++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.+||.++..++.... +.
T Consensus 1 l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVE---DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEEC---CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 47899999996 24699999999999999999999999999999999999 47999999999999988887665 44
Q ss_pred ceEEEeccCCcccc-cHHHHHhcCCCC-------CCCC----HHHHHHHHHHcCcH
Q 005561 615 VVSIVNQEPVLFSV-SVGENIAYGLPD-------ENVS----KDDIIKAAKAANAH 658 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~g-TIreNI~lG~p~-------~~~s----deeI~~Al~~A~l~ 658 (691)
.++||+|++.+|.+ |++||+.+.... ...+ ++++.++++..++.
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 133 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMD 133 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCc
Confidence 59999999999976 899999764210 0011 34577788888885
No 242
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=1e-19 Score=190.55 Aligned_cols=122 Identities=23% Similarity=0.335 Sum_probs=101.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCC--CCh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRT--FDK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~--i~~ 609 (691)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 5999999999962 4699999999999999999999999999999999999874 69999999999864 344
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCCC---CCCHHHHHHHHHHcCcHHHH
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPDE---NVSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~---~~sdeeI~~Al~~A~l~dfI 661 (691)
..+|+.|+||+|++.+|+.|++|||.++.... ...++++.++++.+++.+++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l 151 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV 151 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh
Confidence 56789999999999999999999998863211 01245567788888875544
No 243
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.81 E-value=1.4e-19 Score=189.01 Aligned_cols=126 Identities=23% Similarity=0.396 Sum_probs=101.2
Q ss_pred cEEEEeeEEECCCC------CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH
Q 005561 537 DICLEDVYFSYPLR------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS 610 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~------~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~ 610 (691)
-|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999621 124699999999999999999999999999999999999999999999999998766666
Q ss_pred HhhhceEEEeccCC--ccc-ccHHHHHhcCCC-----CCCCCHHHHHHHHHHcCcH-HHHh
Q 005561 611 EWARVVSIVNQEPV--LFS-VSVGENIAYGLP-----DENVSKDDIIKAAKAANAH-DFII 662 (691)
Q Consensus 611 ~lR~~Ia~V~Qd~~--LF~-gTIreNI~lG~p-----~~~~sdeeI~~Al~~A~l~-dfI~ 662 (691)
..++.++||+|++. ++. -|+.+|+.++.. .....++++.++++..+++ +...
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS 144 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh
Confidence 66778999999985 444 489999875311 1111245688999999994 5443
No 244
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.81 E-value=1.6e-19 Score=183.49 Aligned_cols=123 Identities=28% Similarity=0.361 Sum_probs=97.2
Q ss_pred EEEEeeEEECCCC---C-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEEC--Cc--cCCCCCh
Q 005561 538 ICLEDVYFSYPLR---P-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVG--GE--DLRTFDK 609 (691)
Q Consensus 538 I~f~nVsF~Y~~~---~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~Id--G~--di~~i~~ 609 (691)
|+++||+++|+.. . ..++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+| |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 2469999999999999999999999999999999999999999999998 42 6666665
Q ss_pred HH---h-hhceEEEeccCCcccc-cHHHHHhcCC----CCCCCCHHHHHHHHHHcCcHHH
Q 005561 610 SE---W-ARVVSIVNQEPVLFSV-SVGENIAYGL----PDENVSKDDIIKAAKAANAHDF 660 (691)
Q Consensus 610 ~~---l-R~~Ia~V~Qd~~LF~g-TIreNI~lG~----p~~~~sdeeI~~Al~~A~l~df 660 (691)
.. + ++.++||+|++.+|.. |++|||.++. .+.+..++++.++++..++.+.
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 141 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPER 141 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh
Confidence 43 3 4579999999998864 9999997631 1111124567778888888654
No 245
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.1e-19 Score=188.99 Aligned_cols=123 Identities=24% Similarity=0.344 Sum_probs=104.3
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCCC--Ch
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTF--DK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~i--~~ 609 (691)
.+.++++++.|. +.++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+. ..
T Consensus 8 ~~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 488999999995 34699999999999999999999999999999999999987 799999999998653 44
Q ss_pred HHhhhceEEEeccCCcccccHHHHHhcCCCC---CCCCHHHHHHHHHHcCcHHHHh
Q 005561 610 SEWARVVSIVNQEPVLFSVSVGENIAYGLPD---ENVSKDDIIKAAKAANAHDFII 662 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~---~~~sdeeI~~Al~~A~l~dfI~ 662 (691)
..+|+.|+||+|++.+|+.|++|||.++... ....++++.++++.+++.+.+.
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~ 140 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK 140 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh
Confidence 5778899999999999999999999986321 1113467889999999866553
No 246
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.80 E-value=1e-19 Score=176.17 Aligned_cols=96 Identities=27% Similarity=0.409 Sum_probs=84.3
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+++|++ ++++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 478999999963 246999999999999999999999999999999999999999999999983 6899
Q ss_pred EEeccCCcccccHHHHHhcCCCCCCCCHHH
Q 005561 618 IVNQEPVLFSVSVGENIAYGLPDENVSKDD 647 (691)
Q Consensus 618 ~V~Qd~~LF~gTIreNI~lG~p~~~~sdee 647 (691)
|++|++.+|++|++|||.++.+ ...+.-+
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~~~-~~LS~G~ 96 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYPWD-DVLSGGE 96 (166)
T ss_pred EECCCCccccccHHHHhhccCC-CCCCHHH
Confidence 9999999999999999987533 2345444
No 247
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.6e-19 Score=187.40 Aligned_cols=121 Identities=26% Similarity=0.411 Sum_probs=100.0
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEEC------CccCCCCCh
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVG------GEDLRTFDK 609 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~Id------G~di~~i~~ 609 (691)
..|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++ |.++.+++.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 35999999999963 468999999999999999999999999999999999999999666655 477777777
Q ss_pred HHhhhceEEEeccCCcccc-cHHHHHhcCCCCCC-CCH----HHHHHHHHHcCcHH
Q 005561 610 SEWARVVSIVNQEPVLFSV-SVGENIAYGLPDEN-VSK----DDIIKAAKAANAHD 659 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~g-TIreNI~lG~p~~~-~sd----eeI~~Al~~A~l~d 659 (691)
..+|+.++|++|++.+|.+ |++|||.++..... .++ +++.++++..++++
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 141 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCc
Confidence 8889999999999999975 99999997632111 122 34677888888854
No 248
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=1.5e-19 Score=187.07 Aligned_cols=99 Identities=35% Similarity=0.551 Sum_probs=88.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC-----CCeEEECCccCCC--CCh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT-----GGRITVGGEDLRT--FDK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~-----~G~I~IdG~di~~--i~~ 609 (691)
-|+++||+++|+ +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYG---DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEEC---CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 388999999996 346999999999999999999999999999999999999875 8999999999875 345
Q ss_pred HHhhhceEEEeccCCcccc-cHHHHHhcCC
Q 005561 610 SEWARVVSIVNQEPVLFSV-SVGENIAYGL 638 (691)
Q Consensus 610 ~~lR~~Ia~V~Qd~~LF~g-TIreNI~lG~ 638 (691)
..+|+.|+|++|++.+|.+ |++||+.++.
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~ 110 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGL 110 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHH
Confidence 5778899999999999984 9999998753
No 249
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=2e-19 Score=194.75 Aligned_cols=122 Identities=25% Similarity=0.351 Sum_probs=104.4
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC----ChHHhh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF----DKSEWA 613 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i----~~~~lR 613 (691)
|++ |++++|++ .. + |+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+. +...++
T Consensus 2 l~~-~l~k~~~~---~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999962 22 3 99999999999999999999999999999999999999999999998653 244678
Q ss_pred hceEEEeccCCccc-ccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~-gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
++|+||+|++.+|. .|++|||.++... ..++++.++++..++.++..+.|..
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~ 128 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAK--SMVAQFDKIVALLGIEPLLDRYPGS 128 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhh--hhHHHHHHHHHHcCCchhhhCCccc
Confidence 89999999999996 6999999998542 3567899999999998888776653
No 250
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.80 E-value=1.3e-19 Score=180.19 Aligned_cols=99 Identities=23% Similarity=0.429 Sum_probs=88.5
Q ss_pred cEEEEeeEEECCCC---CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcC--CCCCCeEEECCccCCCCChHH
Q 005561 537 DICLEDVYFSYPLR---PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY--EPTGGRITVGGEDLRTFDKSE 611 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~---~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly--~p~~G~I~IdG~di~~i~~~~ 611 (691)
.|+++||+|+|++. .+.++|+|+||+|++||.++|+|++|||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999731 0257999999999999999999999999999999999999 9999999999998864 36
Q ss_pred hhhceEEEeccCCccc-ccHHHHHhcCC
Q 005561 612 WARVVSIVNQEPVLFS-VSVGENIAYGL 638 (691)
Q Consensus 612 lR~~Ia~V~Qd~~LF~-gTIreNI~lG~ 638 (691)
+|+.++|++|++.+|. .|++||+.++.
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~ 107 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA 107 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH
Confidence 7889999999999987 49999998753
No 251
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.3e-19 Score=179.69 Aligned_cols=97 Identities=28% Similarity=0.466 Sum_probs=86.4
Q ss_pred cEEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcC--CCCCCeEEECCccCCCCChHHhh
Q 005561 537 DICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY--EPTGGRITVGGEDLRTFDKSEWA 613 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly--~p~~G~I~IdG~di~~i~~~~lR 613 (691)
.|+++|++|.|+++. +.++|+|+||+|++||.++|+|+||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 256999999999999999999999999999999999986 489999999999875 5678
Q ss_pred hceEEEeccCCcccc-cHHHHHhcC
Q 005561 614 RVVSIVNQEPVLFSV-SVGENIAYG 637 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~g-TIreNI~lG 637 (691)
+.++|++|++.+|.+ |++||+.++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~ 103 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS 103 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH
Confidence 899999999988875 999999875
No 252
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2.4e-19 Score=187.70 Aligned_cols=123 Identities=25% Similarity=0.371 Sum_probs=99.6
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhh-hc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA-RV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR-~~ 615 (691)
.|+++||+++|++ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ..+ +.
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNL 79 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccce
Confidence 4999999999962 3469999999999999999999999999999999999999999999999998742 233 46
Q ss_pred eEEEeccCCc---ccccHHHHHhcCCCC--------CCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 616 VSIVNQEPVL---FSVSVGENIAYGLPD--------ENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 616 Ia~V~Qd~~L---F~gTIreNI~lG~p~--------~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
++||+|++.+ +..+++||+.++... ....++++.++++..++.++..+.+
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 140 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI 140 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc
Confidence 9999999865 566899999764210 0112456778889999988765544
No 253
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=3.3e-19 Score=190.88 Aligned_cols=130 Identities=28% Similarity=0.393 Sum_probs=103.3
Q ss_pred cEEEEeeEEECCCCC-------CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh
Q 005561 537 DICLEDVYFSYPLRP-------DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK 609 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~-------~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~ 609 (691)
-|+++|+++.|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999998875
Q ss_pred H---HhhhceEEEeccCC--ccc-ccHHHHHhcC-----CCCCCCCHHHHHHHHHHcCcH-HHHhcCCc
Q 005561 610 S---EWARVVSIVNQEPV--LFS-VSVGENIAYG-----LPDENVSKDDIIKAAKAANAH-DFIISLPQ 666 (691)
Q Consensus 610 ~---~lR~~Ia~V~Qd~~--LF~-gTIreNI~lG-----~p~~~~sdeeI~~Al~~A~l~-dfI~~LP~ 666 (691)
. .+|++|+||+|++. |+. -||.+|+... ........+++.++++.++++ +...+.|.
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~ 153 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH 153 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCc
Confidence 4 56789999999994 554 4899998632 111111245688899999985 34454443
No 254
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.79 E-value=2.3e-19 Score=194.70 Aligned_cols=123 Identities=23% Similarity=0.351 Sum_probs=100.0
Q ss_pred EeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCc----cCCCCChHHhh---
Q 005561 541 EDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE----DLRTFDKSEWA--- 613 (691)
Q Consensus 541 ~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~----di~~i~~~~lR--- 613 (691)
+++...|+ ...+|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++||. ++.+.+...+|
T Consensus 28 ~~~~~~~g---~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r 104 (382)
T TIGR03415 28 EEILDETG---LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLR 104 (382)
T ss_pred HHHHHhhC---CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHh
Confidence 34445564 346899999999999999999999999999999999999999999999996 67777765543
Q ss_pred -hceEEEeccCCccc-ccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCc
Q 005561 614 -RVVSIVNQEPVLFS-VSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 614 -~~Ia~V~Qd~~LF~-gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
++|+||+|++.+|. .|++||+.++...... .++++.++++..++.++....|.
T Consensus 105 ~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~ 163 (382)
T TIGR03415 105 THRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPG 163 (382)
T ss_pred cCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChh
Confidence 58999999999997 7999999986321111 23567889999999887776654
No 255
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.79 E-value=2.5e-19 Score=176.19 Aligned_cols=94 Identities=18% Similarity=0.371 Sum_probs=85.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh-HHhhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~-~~lR~~ 615 (691)
-|+++|++++| +|+|+||+|++||+++|+|++|||||||+++|+|+++|++|+|.+||.++.+++. ..+|+.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999998 7999999999999999999999999999999999999999999999999988874 457889
Q ss_pred eEEEeccC----CcccccHHHHHhcC
Q 005561 616 VSIVNQEP----VLFSVSVGENIAYG 637 (691)
Q Consensus 616 Ia~V~Qd~----~LF~gTIreNI~lG 637 (691)
++||+|++ .+++.|++||+.++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHH
Confidence 99999995 35568999999875
No 256
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.79 E-value=3.2e-19 Score=202.87 Aligned_cols=124 Identities=32% Similarity=0.534 Sum_probs=105.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhh-hc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA-RV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR-~~ 615 (691)
-|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999962 4699999999999999999999999999999999999999999999999999888776655 46
Q ss_pred eEEEeccCCcccc-cHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhc
Q 005561 616 VSIVNQEPVLFSV-SVGENIAYGLPDENVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 616 Ia~V~Qd~~LF~g-TIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
++||+|++.+|.. |++||+.++.......++++.++++..++.++...
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 136 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDS 136 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccC
Confidence 9999999998875 99999998743211234678888999888665443
No 257
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=3.1e-19 Score=188.08 Aligned_cols=134 Identities=26% Similarity=0.397 Sum_probs=111.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+..|.. +..+|+||||+|++||.+|++||+|||||||+|+|+|+..|++|+|.++|.|...- ...+|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4889999999962 35799999999999999999999999999999999999999999999999987766 77899999
Q ss_pred EEEeccCCcccc-cHHHHHhcC-----CCCCCCCHHHHHHHHHHcCcHH----HHhcCCcccccchhh
Q 005561 617 SIVNQEPVLFSV-SVGENIAYG-----LPDENVSKDDIIKAAKAANAHD----FIISLPQVWLSKSHF 674 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG-----~p~~~~sdeeI~~Al~~A~l~d----fI~~LP~GydT~~~~ 674 (691)
|||+|++.++.. |++|||.|. .+. +..++++.++++..++.+ .+.++..|-.-.+.+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~i 147 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSK-EEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSI 147 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHH
Confidence 999999998864 999999763 221 124678999999999986 255566555444433
No 258
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.78 E-value=5.9e-19 Score=184.25 Aligned_cols=121 Identities=27% Similarity=0.425 Sum_probs=97.8
Q ss_pred EEEEeeEEECCCC------CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh--
Q 005561 538 ICLEDVYFSYPLR------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-- 609 (691)
Q Consensus 538 I~f~nVsF~Y~~~------~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~-- 609 (691)
|+++||+|+|++. .+.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8999999999731 13579999999999999999999999999999999999999999999999999988765
Q ss_pred -HHhhhceEEEeccCC--cc-cccHHHHHhcCC-----CCCCCCHHHHHHHHHHcCcH
Q 005561 610 -SEWARVVSIVNQEPV--LF-SVSVGENIAYGL-----PDENVSKDDIIKAAKAANAH 658 (691)
Q Consensus 610 -~~lR~~Ia~V~Qd~~--LF-~gTIreNI~lG~-----p~~~~sdeeI~~Al~~A~l~ 658 (691)
..+|+.++||+|++. ++ +.|++||+.++. .+....++.+.++++..++.
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 141 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLD 141 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCC
Confidence 357889999999983 43 479999986431 11111223567778877775
No 259
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.78 E-value=9.4e-19 Score=181.76 Aligned_cols=126 Identities=23% Similarity=0.259 Sum_probs=98.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCcc-----CCCCChHH
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED-----LRTFDKSE 611 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~d-----i~~i~~~~ 611 (691)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+++...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4999999999963 469999999999999999999999999999999999999999999999998 87776554
Q ss_pred ----hhhceEEEeccCC--cc-cccHHHHHhcC-----CCCCCCCHHHHHHHHHHcCcH-HHHhcCC
Q 005561 612 ----WARVVSIVNQEPV--LF-SVSVGENIAYG-----LPDENVSKDDIIKAAKAANAH-DFIISLP 665 (691)
Q Consensus 612 ----lR~~Ia~V~Qd~~--LF-~gTIreNI~lG-----~p~~~~sdeeI~~Al~~A~l~-dfI~~LP 665 (691)
+++.++||+|++. ++ +.|+.|||.+. ..+....++++.++++..++. +.....+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLP 149 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCC
Confidence 3567999999984 33 35889998642 111001234566777777774 3444433
No 260
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=5e-19 Score=178.59 Aligned_cols=121 Identities=27% Similarity=0.477 Sum_probs=98.0
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC----ChHHhh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF----DKSEWA 613 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i----~~~~lR 613 (691)
+++ ||+++|++ ..+ |+||+|++ |.++|+|+||||||||+++|+|+++|++|+|.+||.++.+. +...+|
T Consensus 2 ~~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 2 LCV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred cee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 345 89999973 334 99999999 99999999999999999999999999999999999988643 234578
Q ss_pred hceEEEeccCCccc-ccHHHHHhcCCCCC--CCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDE--NVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~-gTIreNI~lG~p~~--~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
+.++||+|++.+|. .|++||+.++.... ...++++.++++..++.+.+...|
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 129 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYP 129 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCc
Confidence 89999999999996 59999998764210 113456788899998877665543
No 261
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.78 E-value=9.8e-19 Score=180.73 Aligned_cols=113 Identities=30% Similarity=0.414 Sum_probs=98.1
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999987 3469
Q ss_pred EEEeccCCccc---ccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 617 SIVNQEPVLFS---VSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 617 a~V~Qd~~LF~---gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
+|++|++.++. .|+++|+.+.. ..+++++.++++..++.+++...+.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~l~~~gl~~~~~~~~~ 119 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP---GTKKEDILPALKRVQAGHLIDAPMQ 119 (251)
T ss_pred EEeccccccccccChhHHHHHhccc---cccHHHHHHHHHHcCChHHHhCChh
Confidence 99999998875 48999987642 2457889999999999887765443
No 262
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.78 E-value=6.9e-19 Score=190.75 Aligned_cols=122 Identities=26% Similarity=0.343 Sum_probs=100.4
Q ss_pred eeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC----hHHhhhceE
Q 005561 542 DVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD----KSEWARVVS 617 (691)
Q Consensus 542 nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~----~~~lR~~Ia 617 (691)
|++++|++ .. + |+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.|+
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 88999962 23 4 999999999999999999999999999999999999999999999986543 346788999
Q ss_pred EEeccCCcccc-cHHHHHhcCCCCCC--CCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 618 IVNQEPVLFSV-SVGENIAYGLPDEN--VSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 618 ~V~Qd~~LF~g-TIreNI~lG~p~~~--~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
||+|++.+|.. |++||+.++..... ..++++.++++..++.++..+.|..+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 132 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRL 132 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 99999999975 99999998743211 11345888999999988777665433
No 263
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=7.8e-19 Score=188.05 Aligned_cols=122 Identities=19% Similarity=0.344 Sum_probs=96.2
Q ss_pred EEEEeeEEECCCCCC-cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC----CCCCeEEECCccCCCCChHHh
Q 005561 538 ICLEDVYFSYPLRPD-VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE----PTGGRITVGGEDLRTFDKSEW 612 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~-~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~----p~~G~I~IdG~di~~i~~~~l 612 (691)
|+++|++++|+.+.. ..+|+||||+|++||.+||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+++
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999974221 369999999999999999999999999999999999998 489999999999999987766
Q ss_pred hh----ceEEEeccCC--ccc-ccHHH----HHhcCC-CCCCCCHHHHHHHHHHcCcHH
Q 005561 613 AR----VVSIVNQEPV--LFS-VSVGE----NIAYGL-PDENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 613 R~----~Ia~V~Qd~~--LF~-gTIre----NI~lG~-p~~~~sdeeI~~Al~~A~l~d 659 (691)
++ .|+||+|++. ++. -|+.+ |+.... ......++++.++++.+++.+
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~ 142 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD 142 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC
Confidence 54 7999999995 332 35554 444321 111123466889999999964
No 264
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.78 E-value=4.6e-19 Score=188.26 Aligned_cols=110 Identities=21% Similarity=0.299 Sum_probs=92.6
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccc-cHH
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV-SVG 631 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~g-TIr 631 (691)
.++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.++.. ....+|++|+||+|++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999876 345778999999999999976 999
Q ss_pred HHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhc
Q 005561 632 ENIAYGLPDENV----SKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 632 eNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~ 663 (691)
|||.++...... .++++.++++..++.+...+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 120 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR 120 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCC
Confidence 999864211011 23567888999998765544
No 265
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.78 E-value=8.4e-19 Score=199.15 Aligned_cols=120 Identities=27% Similarity=0.437 Sum_probs=100.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh-HHhhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~-~~lR~~ 615 (691)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999962 469999999999999999999999999999999999999999999999999876553 456889
Q ss_pred eEEEeccCCcccc-cHHHHHhcCCCCC--C-CC----HHHHHHHHHHcCcHH
Q 005561 616 VSIVNQEPVLFSV-SVGENIAYGLPDE--N-VS----KDDIIKAAKAANAHD 659 (691)
Q Consensus 616 Ia~V~Qd~~LF~g-TIreNI~lG~p~~--~-~s----deeI~~Al~~A~l~d 659 (691)
|+||+|++.+|.+ |++||+.++.... . .+ ++++.++++..++.+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 132 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI 132 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999999875 9999999863110 0 11 346778888888754
No 266
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.6e-18 Score=171.43 Aligned_cols=131 Identities=25% Similarity=0.389 Sum_probs=102.4
Q ss_pred cEEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC-hHHhhh
Q 005561 537 DICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD-KSEWAR 614 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~-~~~lR~ 614 (691)
.++++|+++.|+.+. ..++|+||||+|.+||++||||+||||||||+++|+|+-+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997421 014999999999999999999999999999999999999999999999997665543 347889
Q ss_pred ceEEEeccCCc-cc--ccHHHHHhcC-CC-CCCCCHHHHHHHHHHcCc-HHHHhcCCcc
Q 005561 615 VVSIVNQEPVL-FS--VSVGENIAYG-LP-DENVSKDDIIKAAKAANA-HDFIISLPQV 667 (691)
Q Consensus 615 ~Ia~V~Qd~~L-F~--gTIreNI~lG-~p-~~~~sdeeI~~Al~~A~l-~dfI~~LP~G 667 (691)
.|-+|+|||+- +| -||++=|.=. ++ .-+-.+++++++++.+|+ .+|..+.|+-
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~e 141 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHE 141 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchh
Confidence 99999999974 32 4666655311 00 011356779999999999 4577777763
No 267
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1e-18 Score=198.60 Aligned_cols=121 Identities=25% Similarity=0.324 Sum_probs=100.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC--CCCeEEECCccCCCCChHH-hh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP--TGGRITVGGEDLRTFDKSE-WA 613 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p--~~G~I~IdG~di~~i~~~~-lR 613 (691)
-|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++...+... +|
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 489999999996 24699999999999999999999999999999999999996 8999999999998777654 46
Q ss_pred hceEEEeccCCcccc-cHHHHHhcCCCCC---CCC----HHHHHHHHHHcCcHHH
Q 005561 614 RVVSIVNQEPVLFSV-SVGENIAYGLPDE---NVS----KDDIIKAAKAANAHDF 660 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~g-TIreNI~lG~p~~---~~s----deeI~~Al~~A~l~df 660 (691)
+.++||+|++.+|.. |++|||.++.... ..+ .+++.++++..++.+.
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 136 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN 136 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 789999999998864 9999999863210 011 2457778888887543
No 268
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.3e-18 Score=167.86 Aligned_cols=134 Identities=27% Similarity=0.438 Sum_probs=115.9
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+.+|+|++-. ++.+|+++||++++||.+||+||+|+|||||+|.|+|...|++|++.+||.++.++...++-++-+
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 78899998875 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCc-ccccHHHHHhcCCC-C---CCCCHHH--HHHHHHHcCcHHH----HhcCCcccccchhh
Q 005561 618 IVNQEPVL-FSVSVGENIAYGLP-D---ENVSKDD--IIKAAKAANAHDF----IISLPQVWLSKSHF 674 (691)
Q Consensus 618 ~V~Qd~~L-F~gTIreNI~lG~p-~---~~~sdee--I~~Al~~A~l~df----I~~LP~GydT~~~~ 674 (691)
+.||+..| |.=|++|=+.||+- . .+..+++ ..+|+..+++..| ...|..|-.-.+||
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVql 146 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQL 146 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHH
Confidence 99999998 99999999999962 2 1223445 6778888887664 45677777777776
No 269
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.77 E-value=1.4e-18 Score=180.01 Aligned_cols=117 Identities=23% Similarity=0.346 Sum_probs=95.3
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC----CCCeEEECCccCCCCChHHh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP----TGGRITVGGEDLRTFDKSEW 612 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p----~~G~I~IdG~di~~i~~~~l 612 (691)
.|+++||+|+| + .++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 3589999999999999999999999999999999999999 999999999988632 223
Q ss_pred hhceEEEeccCC-ccc--ccHHHHHhcCC--CCCCCCHHHHHHHHHHcCcHH
Q 005561 613 ARVVSIVNQEPV-LFS--VSVGENIAYGL--PDENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 613 R~~Ia~V~Qd~~-LF~--gTIreNI~lG~--p~~~~sdeeI~~Al~~A~l~d 659 (691)
++.|+||+|++. .|. .|+.+|+.+.. ......++++.++++..++.+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 129 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN 129 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC
Confidence 468999999985 454 58888875410 011134578899999999876
No 270
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.77 E-value=1.4e-18 Score=179.73 Aligned_cols=126 Identities=23% Similarity=0.332 Sum_probs=102.0
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhc--CCCCCCeEEECCccCCCCChHHhhh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--YEPTGGRITVGGEDLRTFDKSEWAR 614 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gl--y~p~~G~I~IdG~di~~i~~~~lR~ 614 (691)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4999999999962 4699999999999999999999999999999999998 7899999999999999888766655
Q ss_pred -ceEEEeccCCcccc-cHHHHHhcCCC-C------CCCC----HHHHHHHHHHcCcH-HHHhcCC
Q 005561 615 -VVSIVNQEPVLFSV-SVGENIAYGLP-D------ENVS----KDDIIKAAKAANAH-DFIISLP 665 (691)
Q Consensus 615 -~Ia~V~Qd~~LF~g-TIreNI~lG~p-~------~~~s----deeI~~Al~~A~l~-dfI~~LP 665 (691)
.++|++|++.+|.+ |+++|+.++.. . .+.+ .+++.++++..++. +.+...|
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 148 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNV 148 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhcccc
Confidence 58999999999985 79999976421 0 0011 24567788888886 3444333
No 271
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.77 E-value=8.2e-19 Score=199.72 Aligned_cols=121 Identities=26% Similarity=0.308 Sum_probs=100.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH-hhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~-lR~~ 615 (691)
-|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+... .|+.
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 489999999996 246999999999999999999999999999999999999999999999999998887654 3567
Q ss_pred eEEEeccCCcccc-cHHHHHhcCCCC----CC---C----CHHHHHHHHHHcCcHHH
Q 005561 616 VSIVNQEPVLFSV-SVGENIAYGLPD----EN---V----SKDDIIKAAKAANAHDF 660 (691)
Q Consensus 616 Ia~V~Qd~~LF~g-TIreNI~lG~p~----~~---~----sdeeI~~Al~~A~l~df 660 (691)
|+||+|++.+|.. |++||+.++... .. . .++++.++++..++.+.
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 138 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD 138 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC
Confidence 9999999998875 999999876310 00 0 12456778888887543
No 272
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.77 E-value=1.9e-18 Score=201.51 Aligned_cols=132 Identities=26% Similarity=0.376 Sum_probs=110.1
Q ss_pred cEEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHh---
Q 005561 537 DICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW--- 612 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~l--- 612 (691)
-|+++|++++|+++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999999887664
Q ss_pred -hhceEEEeccCCccc-ccHHHHHhcCCCCC----CCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 613 -ARVVSIVNQEPVLFS-VSVGENIAYGLPDE----NVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 613 -R~~Ia~V~Qd~~LF~-gTIreNI~lG~p~~----~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
|+.++||+|++.+|. .|+.||+.++.... ...++++.++++..++++++...|..+
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~L 145 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQL 145 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccC
Confidence 578999999999996 59999998642111 112346778888999988887776543
No 273
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.77 E-value=2.4e-18 Score=178.21 Aligned_cols=119 Identities=24% Similarity=0.212 Sum_probs=94.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCcc-----CCCCChHH
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED-----LRTFDKSE 611 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~d-----i~~i~~~~ 611 (691)
.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+++..+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 77666543
Q ss_pred ----hhhceEEEeccCCc---ccccHHHHHhcC-----CCCCCCCHHHHHHHHHHcCcH
Q 005561 612 ----WARVVSIVNQEPVL---FSVSVGENIAYG-----LPDENVSKDDIIKAAKAANAH 658 (691)
Q Consensus 612 ----lR~~Ia~V~Qd~~L---F~gTIreNI~lG-----~p~~~~sdeeI~~Al~~A~l~ 658 (691)
+++.|+|++|++.+ +..|+.+|+.++ .......++++.+.++..++.
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 138 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEID 138 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCC
Confidence 34679999999852 345889998542 111011245667777777774
No 274
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.77 E-value=8.5e-19 Score=199.11 Aligned_cols=133 Identities=26% Similarity=0.291 Sum_probs=105.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH-hhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~-lR~~ 615 (691)
-|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .|+.
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 389999999996 246999999999999999999999999999999999999999999999999987665544 4678
Q ss_pred eEEEeccCCcccc-cHHHHHhcCCCC----CCCC----HHHHHHHHHHcCcHHH----HhcCCcccccch
Q 005561 616 VSIVNQEPVLFSV-SVGENIAYGLPD----ENVS----KDDIIKAAKAANAHDF----IISLPQVWLSKS 672 (691)
Q Consensus 616 Ia~V~Qd~~LF~g-TIreNI~lG~p~----~~~s----deeI~~Al~~A~l~df----I~~LP~GydT~~ 672 (691)
++||+|++.+|.. |++|||.++... ...+ ++++.++++..++.+. +.+|..|-...+
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMV 150 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHH
Confidence 9999999998864 999999986321 0011 2456778888887543 445555544333
No 275
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.76 E-value=1.9e-18 Score=178.35 Aligned_cols=120 Identities=27% Similarity=0.383 Sum_probs=99.3
Q ss_pred EEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEE
Q 005561 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (691)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~ 618 (691)
+++||+++ .+|+|+||+|++||.++|+|++|||||||+++|+|+++ .+|+|.+||.++.+.+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 46777774 16999999999999999999999999999999999996 59999999999998888888899999
Q ss_pred EeccCC-cccccHHHHHhcCCCCCC---CCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 619 VNQEPV-LFSVSVGENIAYGLPDEN---VSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 619 V~Qd~~-LF~gTIreNI~lG~p~~~---~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
|+|++. .+..|++||+.++.+... ..++++.++++..++.+...+.+.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 125 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVN 125 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcc
Confidence 999985 557899999998743210 113567888999998776655443
No 276
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=2e-18 Score=185.39 Aligned_cols=122 Identities=24% Similarity=0.307 Sum_probs=98.5
Q ss_pred EEEEeeEEECCCC-CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC----CCCCeEEECCccCCCCChHHh
Q 005561 538 ICLEDVYFSYPLR-PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE----PTGGRITVGGEDLRTFDKSEW 612 (691)
Q Consensus 538 I~f~nVsF~Y~~~-~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~----p~~G~I~IdG~di~~i~~~~l 612 (691)
|+++|++++|+.+ ....+|+|+||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||+++.+++.+.+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 8999999999632 12469999999999999999999999999999999999986 589999999999998887665
Q ss_pred h----hceEEEeccCCc--c-cccHHHHHhcCC----C------CCCCCHHHHHHHHHHcCcHH
Q 005561 613 A----RVVSIVNQEPVL--F-SVSVGENIAYGL----P------DENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 613 R----~~Ia~V~Qd~~L--F-~gTIreNI~lG~----p------~~~~sdeeI~~Al~~A~l~d 659 (691)
+ +.|+||+|++.. + ..||.+|+.... . .....++++.++++.+++++
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~ 147 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKD 147 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCC
Confidence 4 479999999973 2 358999996420 0 00012457889999999963
No 277
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.76 E-value=2.4e-18 Score=184.54 Aligned_cols=122 Identities=25% Similarity=0.430 Sum_probs=95.8
Q ss_pred cEEEEeeEEECCCC-CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC---CCeEEECCccCCCCChHHh
Q 005561 537 DICLEDVYFSYPLR-PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTFDKSEW 612 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~-~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~---~G~I~IdG~di~~i~~~~l 612 (691)
-++++|+++.|+.+ ....+++|+||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.++.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 48999999999632 1246999999999999999999999999999999999999996 9999999999999987776
Q ss_pred h----hceEEEeccC--Cccc-ccHHHHHhcCCC-CCCCC----HHHHHHHHHHcCcH
Q 005561 613 A----RVVSIVNQEP--VLFS-VSVGENIAYGLP-DENVS----KDDIIKAAKAANAH 658 (691)
Q Consensus 613 R----~~Ia~V~Qd~--~LF~-gTIreNI~lG~p-~~~~s----deeI~~Al~~A~l~ 658 (691)
| +.|+||+|++ .++. -|+.+|+..... ....+ .+++.++++.+++.
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~ 149 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMP 149 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 4 4799999998 3443 477777643100 00122 24566777777774
No 278
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=2e-18 Score=169.76 Aligned_cols=98 Identities=29% Similarity=0.527 Sum_probs=91.1
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH-hhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~-lR~~ 615 (691)
-++++|++-.|. ...+|+|+||++++||.++++|++|+||||+++.|+|+.+|.+|+|.++|.|+...+.+. .|.-
T Consensus 3 mL~v~~l~~~YG---~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeeccc---ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 378999999996 357999999999999999999999999999999999999999999999999999998765 5778
Q ss_pred eEEEeccCCccc-ccHHHHHhcC
Q 005561 616 VSIVNQEPVLFS-VSVGENIAYG 637 (691)
Q Consensus 616 Ia~V~Qd~~LF~-gTIreNI~lG 637 (691)
|+||||.-.+|. -||.|||.+|
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g 102 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLG 102 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhh
Confidence 999999999996 5999999987
No 279
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.76 E-value=6.1e-15 Score=158.36 Aligned_cols=446 Identities=13% Similarity=0.154 Sum_probs=237.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 005561 181 VLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPL-WKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLI 259 (691)
Q Consensus 181 ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~ 259 (691)
.++++.-+.+.+.+.-+-++++..++..+...+ |.++-++++. .-.+++ ......+..++.-.+|.++-+|+.+
T Consensus 124 s~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~lia----iPAtFv-NS~Iryle~klaLafrtrL~~h~y~ 198 (728)
T KOG0064|consen 124 SFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIA----IPASFV-NSAIRYLESKLALAFRTRLTRHAYD 198 (728)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhh----ccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666666777777665443332 2222222111 111111 1112233345555666666666655
Q ss_pred CCh---hhhcc-cChhH---HHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 005561 260 QKA---EFFDR-YKVGE---LSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVL 332 (691)
Q Consensus 260 lp~---~~f~~-~~~G~---l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~~~~~~~~ 332 (691)
+-. .||.- +.-|. .=++++.|+....+-..+.... ..-.++.++.....+.-.+.....-...+..+++.+
T Consensus 199 ~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysn--LtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~l 276 (728)
T KOG0064|consen 199 MYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSN--LTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYL 276 (728)
T ss_pred HHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHH
Confidence 422 33321 11122 2345778877766666554432 333344433322222222111110000011111111
Q ss_pred HHHHHh----hhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 333 VAVYKR----STVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRI 408 (691)
Q Consensus 333 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~ 408 (691)
.....| +..++..+.....+.+...-...+.+-++|-.|+..+.+.++.++...+........-+...+...+-++
T Consensus 277 Ta~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF 356 (728)
T KOG0064|consen 277 TAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQF 356 (728)
T ss_pred HHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 2223333333334445556677899999999999999999988888777665543332222222222222
Q ss_pred HHHHHHHHHHHHHHHH------------HhcCCcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 409 AIYISLLALYCLGGSK------------VKAGELS--------VGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVER 468 (691)
Q Consensus 409 ~~~~~~~~il~~G~~l------------v~~g~lt--------vG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~R 468 (691)
+.- ..|-|.-+ ...|... ...++.-=.+.......+..++....++++..+.-.|
T Consensus 357 ~mK-----YvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~R 431 (728)
T KOG0064|consen 357 VMK-----YTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNR 431 (728)
T ss_pred HHH-----HhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 111 11111111 1112211 1122222334555667788888888888888888888
Q ss_pred HHHHhcccccchhhhcccchhhhcccchhhhhhhhhcCCCCCcccccchhhhhccccccccCCCCCcCcEEEEeeEEECC
Q 005561 469 INSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYP 548 (691)
Q Consensus 469 i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~ 548 (691)
+.+.++.-+ +......++. ...+..+. ... . +.....+- ...........|.++||-.--|
T Consensus 432 v~~mf~v~~--dv~~g~~~k~-~v~e~~~~--------~~~------~-e~r~s~~l-~~~~~i~~~~gI~lenIpvItP 492 (728)
T KOG0064|consen 432 VFTMFSVLH--DVHKGNYNKT-AVPEILSS--------RTI------D-ESRNSNPL-PTTDAIRNFNGIILENIPVITP 492 (728)
T ss_pred HHHHHHHHH--HHhccccccc-ccCchhhc--------cCc------c-ccccCCcC-CccchhhcccceEEecCceecc
Confidence 886654221 1000000000 00000000 000 0 00000000 0000001234599999988777
Q ss_pred CCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccc
Q 005561 549 LRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV 628 (691)
Q Consensus 549 ~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~g 628 (691)
+ ...+...++|+|++|-.+-|.||+|||||+|.++|.|+++...|...+-- +.+|-|+||.|+.=-|
T Consensus 493 ~--~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~g 559 (728)
T KOG0064|consen 493 A--GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGG 559 (728)
T ss_pred C--cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcC
Confidence 4 34578999999999999999999999999999999999999888876543 2459999999999999
Q ss_pred cHHHHHhcCCC-----CCCCCHHHHHHHHHHcCcHHHHhcCCcccccc
Q 005561 629 SVGENIAYGLP-----DENVSKDDIIKAAKAANAHDFIISLPQVWLSK 671 (691)
Q Consensus 629 TIreNI~lG~p-----~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT~ 671 (691)
|.||-|-|-.. +..++|+|+++.++.+.++. |.+-..|+|..
T Consensus 560 tlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~-i~qr~~g~da~ 606 (728)
T KOG0064|consen 560 TLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEH-ILQREGGWDAV 606 (728)
T ss_pred cccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHH-HHHhccChhhh
Confidence 99999987310 12588999999999999975 55556677654
No 280
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.76 E-value=2.1e-18 Score=172.22 Aligned_cols=94 Identities=32% Similarity=0.449 Sum_probs=83.7
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhc--CCCCCCeEEECCccCCCCChHHh-hh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--YEPTGGRITVGGEDLRTFDKSEW-AR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gl--y~p~~G~I~IdG~di~~i~~~~l-R~ 614 (691)
++++|++++|+ +.++|+|+||+|++||.+||+|+||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |+
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVG---GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeC---CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 46899999996 24699999999999999999999999999999999999 68999999999999999887654 55
Q ss_pred ceEEEeccCCcccc-cHHHHH
Q 005561 615 VVSIVNQEPVLFSV-SVGENI 634 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~g-TIreNI 634 (691)
.++||+|++.+|.+ |+++|+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l 98 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL 98 (200)
T ss_pred cEEEeecChhhccCccHHHHH
Confidence 69999999999986 566666
No 281
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.75 E-value=2.4e-18 Score=176.28 Aligned_cols=110 Identities=20% Similarity=0.395 Sum_probs=86.4
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEe-ccCCcc-cccH
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVN-QEPVLF-SVSV 630 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~-Qd~~LF-~gTI 630 (691)
.++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.+. ...++++++|++ |++.+| +-|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346788999997 667776 5799
Q ss_pred HHHHhcCCCCCCCCH----HHHHHHHHHcCcHHHHhc
Q 005561 631 GENIAYGLPDENVSK----DDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 631 reNI~lG~p~~~~sd----eeI~~Al~~A~l~dfI~~ 663 (691)
+||+.++......+. +++.++++..++.+....
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDT 149 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcC
Confidence 999976421111222 345566677677655443
No 282
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.75 E-value=1.6e-18 Score=162.10 Aligned_cols=97 Identities=35% Similarity=0.588 Sum_probs=90.0
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCccccc-HHHHH
Q 005561 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVS-VGENI 634 (691)
Q Consensus 556 L~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gT-IreNI 634 (691)
|+|+||+|++|++++|+|++|||||||+++|+|.++|++|+|.+||.++.+.+...+|+.++|++|++.+|.+. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999876 9999
Q ss_pred hcCCCCCCCCHHHHHHHHHHcCcHHHH
Q 005561 635 AYGLPDENVSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 635 ~lG~p~~~~sdeeI~~Al~~A~l~dfI 661 (691)
..++++.++++..++.++.
T Consensus 80 --------~~~~~~~~~l~~l~~~~~~ 98 (137)
T PF00005_consen 80 --------ESDERIEEVLKKLGLEDLL 98 (137)
T ss_dssp --------HHHHHHHHHHHHTTHGGGT
T ss_pred --------ccccccccccccccccccc
Confidence 1467889999999886643
No 283
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.74 E-value=6.9e-18 Score=191.24 Aligned_cols=122 Identities=18% Similarity=0.121 Sum_probs=104.5
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+|+|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999963 35999999999999999999999999999999999999999999999999887777777888899
Q ss_pred EEeccCCc---------ccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 618 IVNQEPVL---------FSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 618 ~V~Qd~~L---------F~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
||+|++.+ +.-|++||+.++. ..++++.++++..++.+.....|.
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~ 134 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV----KDPARCEQLAQQFGITALLDRRFK 134 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch----hHHHHHHHHHHHcCCHhhhhCCcc
Confidence 99998753 2569999987652 135678899999999876655444
No 284
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3e-18 Score=194.27 Aligned_cols=128 Identities=26% Similarity=0.355 Sum_probs=100.6
Q ss_pred EEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh-HHhhhceEE
Q 005561 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARVVSI 618 (691)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~-~~lR~~Ia~ 618 (691)
++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. +.+|+.++|
T Consensus 1 ~~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 368999996 2469999999999999999999999999999999999999999999999999876654 356788999
Q ss_pred EeccCCccc-ccHHHHHhcCCC-CCC--CC----HHHHHHHHHHcCcHH----HHhcCCccccc
Q 005561 619 VNQEPVLFS-VSVGENIAYGLP-DEN--VS----KDDIIKAAKAANAHD----FIISLPQVWLS 670 (691)
Q Consensus 619 V~Qd~~LF~-gTIreNI~lG~p-~~~--~s----deeI~~Al~~A~l~d----fI~~LP~GydT 670 (691)
|+|++.+|. .|++||+.++.. ... .+ .+++.++++..++.+ .+..|..|-..
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~q 141 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQ 141 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHH
Confidence 999998775 599999997631 100 11 235667777777743 34455555443
No 285
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.74 E-value=8.1e-18 Score=191.17 Aligned_cols=118 Identities=25% Similarity=0.367 Sum_probs=97.9
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC--CCCeEEECCccCCCCChHH-hhh
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP--TGGRITVGGEDLRTFDKSE-WAR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p--~~G~I~IdG~di~~i~~~~-lR~ 614 (691)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++...+... .|+
T Consensus 2 l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 78999999996 24699999999999999999999999999999999999997 7999999999998877654 467
Q ss_pred ceEEEeccCCcccc-cHHHHHhcCCCCC----CCC----HHHHHHHHHHcCcH
Q 005561 615 VVSIVNQEPVLFSV-SVGENIAYGLPDE----NVS----KDDIIKAAKAANAH 658 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~g-TIreNI~lG~p~~----~~s----deeI~~Al~~A~l~ 658 (691)
.|+||+|++.+|.. |++||+.++.... ..+ ++++.++++..++.
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 131 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLD 131 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCC
Confidence 89999999988875 9999998863210 011 23566777777764
No 286
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.74 E-value=1.5e-18 Score=171.82 Aligned_cols=122 Identities=21% Similarity=0.392 Sum_probs=103.2
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHh-hhce
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARVV 616 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~l-R~~I 616 (691)
++.+|++.+|. .-.+++|+||++++||.+||+||+||||||++|+|.|+|+|++|+|.++|.||..++.... |.-|
T Consensus 5 L~v~~l~k~FG---Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFG---GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecC---CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 57899999996 3569999999999999999999999999999999999999999999999999999997764 5679
Q ss_pred EEEeccCCcccc-cHHHHHhcCCC----------------CCCCCHHHHHHHHHHcCcHHHHh
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGLP----------------DENVSKDDIIKAAKAANAHDFII 662 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~p----------------~~~~sdeeI~~Al~~A~l~dfI~ 662 (691)
+--+|.+.+|.+ ||.||+..|.- +.....|+-.+.++.+++.+...
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~ 144 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELAD 144 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhc
Confidence 999999999975 99999987621 11123455677778888876554
No 287
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.74 E-value=3.9e-18 Score=183.21 Aligned_cols=134 Identities=25% Similarity=0.422 Sum_probs=112.2
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH-Hhhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS-EWARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~-~lR~~ 615 (691)
.|+++|++..|| +..+++||||+|++||.-||.|++|+|||||++.|.|+|+|++|+|.+||++++--++. ..|.-
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 489999999997 35689999999999999999999999999999999999999999999999998866655 56778
Q ss_pred eEEEeccCCcccc-cHHHHHhcCCCCCC-------CCHHHHHHHHHHcCc----HHHHhcCCcccccchh
Q 005561 616 VSIVNQEPVLFSV-SVGENIAYGLPDEN-------VSKDDIIKAAKAANA----HDFIISLPQVWLSKSH 673 (691)
Q Consensus 616 Ia~V~Qd~~LF~g-TIreNI~lG~p~~~-------~sdeeI~~Al~~A~l----~dfI~~LP~GydT~~~ 673 (691)
||+|.|+..|++. |+.|||.+|.+... .-.+++.+.++.-|+ +..|..||-|-+-.+.
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVE 150 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVE 150 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHH
Confidence 9999999999975 99999999975310 124566777776654 5677777777665544
No 288
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.74 E-value=1.2e-17 Score=172.44 Aligned_cols=94 Identities=34% Similarity=0.469 Sum_probs=82.1
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhc--CCCCCCeEEECCccCCCCChHHhh-h
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--YEPTGGRITVGGEDLRTFDKSEWA-R 614 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gl--y~p~~G~I~IdG~di~~i~~~~lR-~ 614 (691)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+ ++|++|+|.+||.++.+++....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999963 4699999999999999999999999999999999999 479999999999999888876655 5
Q ss_pred ceEEEeccCCcccc-cHHHHH
Q 005561 615 VVSIVNQEPVLFSV-SVGENI 634 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~g-TIreNI 634 (691)
.++||+|++.++.. |..+|+
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~ 99 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFL 99 (248)
T ss_pred ceEEEecCchhccchhHHHHH
Confidence 79999999987764 444443
No 289
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=5.8e-18 Score=161.13 Aligned_cols=125 Identities=26% Similarity=0.441 Sum_probs=99.7
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
...++++.+|++.+ .++|+|+|++|++||.++++||||||||||+|+++||.+|..|+|.+||..|..-.- .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 55688999998543 569999999999999999999999999999999999999999999999998876653 258
Q ss_pred EEeccCCccc-ccHHHHHhcCCCCCCCCH----HHHHHHHHHcCcHH----HHhcCCccc
Q 005561 618 IVNQEPVLFS-VSVGENIAYGLPDENVSK----DDIIKAAKAANAHD----FIISLPQVW 668 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~p~~~~sd----eeI~~Al~~A~l~d----fI~~LP~Gy 668 (691)
+|+|++-|+. -|+.||+.||..-..++. +...+.+..+++.| +|-+|..|-
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGm 137 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGM 137 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchH
Confidence 9999999997 699999999843222332 33455666777754 444555553
No 290
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.74 E-value=3.8e-18 Score=167.52 Aligned_cols=80 Identities=33% Similarity=0.613 Sum_probs=75.5
Q ss_pred EEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEE
Q 005561 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (691)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~ 618 (691)
+++||+|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999963 469999999999999999999999999999999999999999999999999999888889999999
Q ss_pred Eec
Q 005561 619 VNQ 621 (691)
Q Consensus 619 V~Q 621 (691)
++|
T Consensus 78 ~~q 80 (180)
T cd03214 78 VPQ 80 (180)
T ss_pred HHH
Confidence 999
No 291
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=5.8e-18 Score=154.55 Aligned_cols=126 Identities=25% Similarity=0.471 Sum_probs=109.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC---CCeEEECCccCCCCChHHhh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTFDKSEWA 613 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~---~G~I~IdG~di~~i~~~~lR 613 (691)
-+.++||+.+-+ +.-.|.|+|++|.+||.+-|.||||||||||+.-+.|..+++ +|++.+|++++..++. -+
T Consensus 2 ~l~l~nvsl~l~---g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~q 76 (213)
T COG4136 2 MLCLKNVSLRLP---GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQ 76 (213)
T ss_pred ceeeeeeeecCC---CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hh
Confidence 367899998876 346899999999999999999999999999999999999985 7999999999998874 47
Q ss_pred hceEEEeccCCccc-ccHHHHHhcCCCCC---CCCHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 614 RVVSIVNQEPVLFS-VSVGENIAYGLPDE---NVSKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~-gTIreNI~lG~p~~---~~sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
+++|+..||++||. -+|.+||.|+.|.. ++......+|+++.+++++..+-|+-
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~t 134 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPAT 134 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhh
Confidence 99999999999996 59999999987642 24456678899999999999888863
No 292
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1e-17 Score=194.64 Aligned_cols=130 Identities=25% Similarity=0.390 Sum_probs=103.9
Q ss_pred cEEEEeeEEECCCCC--------CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC
Q 005561 537 DICLEDVYFSYPLRP--------DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD 608 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~--------~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~ 608 (691)
-|+++||++.|+.+. ...+|+|+||+|++||++||||+||||||||+++|+|+.+|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 499999999996311 236899999999999999999999999999999999999999999999999998776
Q ss_pred hH---HhhhceEEEeccCC--ccc-ccHHHHHhcCC-----CCCCCCHHHHHHHHHHcCcH-HHHhcCCc
Q 005561 609 KS---EWARVVSIVNQEPV--LFS-VSVGENIAYGL-----PDENVSKDDIIKAAKAANAH-DFIISLPQ 666 (691)
Q Consensus 609 ~~---~lR~~Ia~V~Qd~~--LF~-gTIreNI~lG~-----p~~~~sdeeI~~Al~~A~l~-dfI~~LP~ 666 (691)
.. .+|++|+||+|+++ +|. -||+||+.++. ......++++.++++..++. +...+.|.
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 462 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPH 462 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 43 46789999999984 664 59999997531 00001235678889999994 55555554
No 293
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=6.9e-18 Score=171.54 Aligned_cols=132 Identities=32% Similarity=0.517 Sum_probs=111.6
Q ss_pred cEEEEeeEEECCCCCC---------------------cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCC
Q 005561 537 DICLEDVYFSYPLRPD---------------------VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~---------------------~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G 595 (691)
.|+++||+.-+..++. ..-++|+||+|+.||...|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4889999877754321 1127899999999999999999999999999999999999999
Q ss_pred eEEECCccCCCCChHHhh----hceEEEeccCCcc-cccHHHHHhcCCCCCCC----CHHHHHHHHHHcCcHHHHhcCCc
Q 005561 596 RITVGGEDLRTFDKSEWA----RVVSIVNQEPVLF-SVSVGENIAYGLPDENV----SKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 596 ~I~IdG~di~~i~~~~lR----~~Ia~V~Qd~~LF-~gTIreNI~lG~p~~~~----sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
+|++||.|+..++.++|| +.+++|+|.--|| +-||.||..||..-... .++...++++.+|+++|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999988775 4799999999998 57999999998543222 34567899999999999888887
Q ss_pred cc
Q 005561 667 VW 668 (691)
Q Consensus 667 Gy 668 (691)
-+
T Consensus 164 eL 165 (386)
T COG4175 164 EL 165 (386)
T ss_pred cc
Confidence 43
No 294
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.5e-17 Score=182.31 Aligned_cols=100 Identities=35% Similarity=0.532 Sum_probs=91.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHh-hhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEW-ARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~l-R~~ 615 (691)
-++++|++.+|+ ..++|+|+||++.+||..|++|++|+|||||+|.|+|.|+|++|+|++||.+..-.++.+- ..-
T Consensus 8 ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 488999999997 3579999999999999999999999999999999999999999999999999997776654 556
Q ss_pred eEEEeccCCccc-ccHHHHHhcCCC
Q 005561 616 VSIVNQEPVLFS-VSVGENIAYGLP 639 (691)
Q Consensus 616 Ia~V~Qd~~LF~-gTIreNI~lG~p 639 (691)
|+.|.||..|+. -||.|||-+|+.
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre 109 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGRE 109 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccc
Confidence 999999999995 599999999975
No 295
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.73 E-value=1e-17 Score=161.81 Aligned_cols=81 Identities=31% Similarity=0.553 Sum_probs=74.6
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH-Hhhhce
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS-EWARVV 616 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~-~lR~~I 616 (691)
|+++||+++|++ .++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. ..|+++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 478999999963 4699999999999999999999999999999999999999999999999999888764 467789
Q ss_pred EEEec
Q 005561 617 SIVNQ 621 (691)
Q Consensus 617 a~V~Q 621 (691)
+|++|
T Consensus 78 ~~~~q 82 (163)
T cd03216 78 AMVYQ 82 (163)
T ss_pred EEEEe
Confidence 99999
No 296
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.73 E-value=8.6e-18 Score=156.79 Aligned_cols=132 Identities=27% Similarity=0.376 Sum_probs=106.4
Q ss_pred cEEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH---Hh
Q 005561 537 DICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS---EW 612 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~---~l 612 (691)
-|++++++..-++.. .-.+|++++|.|++||.+|||||||||||||+-+|+|+-+|++|+|.+.|+++.+++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 488899988776432 34699999999999999999999999999999999999999999999999999999965 45
Q ss_pred h-hceEEEeccCCcc-cccHHHHHhcCCC---C-CCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 613 A-RVVSIVNQEPVLF-SVSVGENIAYGLP---D-ENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 613 R-~~Ia~V~Qd~~LF-~gTIreNI~lG~p---~-~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
| +++|+|+|.-+|. +-|-.||+.+-.. + ..-..+.-.+-++.+|+.+-+...|..+
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qL 147 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQL 147 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCcccc
Confidence 5 5899999999987 5799999976211 1 1112334567788899988887777643
No 297
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=6.2e-18 Score=161.26 Aligned_cols=127 Identities=28% Similarity=0.486 Sum_probs=109.3
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+.+|. +..||+|+|++|++|+.++|+||+|+|||||+..++|+...++|+|.|||.++.+++-++|.+.++
T Consensus 2 I~i~nv~K~y~---~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYG---TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhC---CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 78899999996 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCccc-ccHHHHHhcCC-CCC-----CCCHHHHHHHHHHcCcH----HHHhcCCcc
Q 005561 618 IVNQEPVLFS-VSVGENIAYGL-PDE-----NVSKDDIIKAAKAANAH----DFIISLPQV 667 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~-p~~-----~~sdeeI~~Al~~A~l~----dfI~~LP~G 667 (691)
+.-|+.++-. -||||=+.||+ |.. .-+...|.+|++--++. .|+.+|..|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGG 139 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGG 139 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccc
Confidence 9999999865 59999999986 211 11234467777777663 467777766
No 298
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.72 E-value=3.9e-18 Score=150.65 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=72.5
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHH
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGE 632 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIre 632 (691)
.++|++++|++++||.++|+|+||||||||++++. +|+|.++|.|+..++.++.++.+++++|+ +|.+||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 35899999999999999999999999999999987 89999999999999999999999999999 99999999
Q ss_pred HHhc
Q 005561 633 NIAY 636 (691)
Q Consensus 633 NI~l 636 (691)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9987
No 299
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.72 E-value=1.6e-17 Score=169.63 Aligned_cols=105 Identities=28% Similarity=0.433 Sum_probs=86.1
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCccc-ccHHHHH
Q 005561 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS-VSVGENI 634 (691)
Q Consensus 556 L~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~-gTIreNI 634 (691)
|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+. ..+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999997 5999999
Q ss_pred hcCCC--CCCCC----HHHHHHHHHHcCcHHHHhcCC
Q 005561 635 AYGLP--DENVS----KDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 635 ~lG~p--~~~~s----deeI~~Al~~A~l~dfI~~LP 665 (691)
.++.. ....+ ++++.++++..++.++..+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 112 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP 112 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh
Confidence 87520 00122 234778888889887665544
No 300
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.71 E-value=1.4e-17 Score=190.37 Aligned_cols=128 Identities=25% Similarity=0.411 Sum_probs=100.8
Q ss_pred cEEEEeeEEECCCC--------CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC
Q 005561 537 DICLEDVYFSYPLR--------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD 608 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~--------~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~ 608 (691)
-|+++||+++|+.+ .+.++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++..++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999621 1246999999999999999999999999999999999999 58999999999988776
Q ss_pred hH---HhhhceEEEeccC--Cccc-ccHHHHHhcCCC------CCCCCHHHHHHHHHHcCcH-HHHhcCC
Q 005561 609 KS---EWARVVSIVNQEP--VLFS-VSVGENIAYGLP------DENVSKDDIIKAAKAANAH-DFIISLP 665 (691)
Q Consensus 609 ~~---~lR~~Ia~V~Qd~--~LF~-gTIreNI~lG~p------~~~~sdeeI~~Al~~A~l~-dfI~~LP 665 (691)
.. .+|+.|+||+|++ .+|. .|++||+.++.. +....++++.++++..++. +...+.|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC
Confidence 54 3578899999998 3665 599999987421 1011235677888888885 4444433
No 301
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.71 E-value=1.6e-18 Score=165.78 Aligned_cols=98 Identities=26% Similarity=0.445 Sum_probs=90.0
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH-hhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~-lR~~ 615 (691)
.+..+|+..+|. .++|.+|+||++++||.|++.||+|+||||....+.|+..|++|+|.+||.|+..++... -|--
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 478899999996 357999999999999999999999999999999999999999999999999999999764 4667
Q ss_pred eEEEeccCCcccc-cHHHHHhcC
Q 005561 616 VSIVNQEPVLFSV-SVGENIAYG 637 (691)
Q Consensus 616 Ia~V~Qd~~LF~g-TIreNI~lG 637 (691)
|||.|||+.+|.+ ||+|||..-
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~v 103 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAV 103 (243)
T ss_pred cccccccchHhhcCcHHHHHHHH
Confidence 9999999999976 999999764
No 302
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3.1e-17 Score=190.63 Aligned_cols=122 Identities=23% Similarity=0.356 Sum_probs=96.0
Q ss_pred cEEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCC----------
Q 005561 537 DICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR---------- 605 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~---------- 605 (691)
-|+++|++++|+... +.++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996321 246999999999999999999999999999999999999999999999997542
Q ss_pred CCChH---Hhh-hceEEEeccC--Cccc-ccHHHHHhcCCC-----CCCCCHHHHHHHHHHcCcH
Q 005561 606 TFDKS---EWA-RVVSIVNQEP--VLFS-VSVGENIAYGLP-----DENVSKDDIIKAAKAANAH 658 (691)
Q Consensus 606 ~i~~~---~lR-~~Ia~V~Qd~--~LF~-gTIreNI~lG~p-----~~~~sdeeI~~Al~~A~l~ 658 (691)
+.+.. .+| +.|+||+|+| .++. -||+|||.++.. .....++++.++++..++.
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 156 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIP 156 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC
Confidence 22322 344 4799999998 5775 599999987421 0001135677888999884
No 303
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.71 E-value=4e-17 Score=204.65 Aligned_cols=128 Identities=22% Similarity=0.391 Sum_probs=106.8
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhc
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~ 615 (691)
..|+++|+++.|++ .++++++|+||++++||.+||+|++|||||||+++|+|+++|++|+|.++|.|+.. +...+|++
T Consensus 927 ~~L~I~nLsK~y~~-~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecC-CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 46999999999963 23579999999999999999999999999999999999999999999999999875 56678999
Q ss_pred eEEEeccCCccc-ccHHHHHhcCCC----CCCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 616 VSIVNQEPVLFS-VSVGENIAYGLP----DENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 616 Ia~V~Qd~~LF~-gTIreNI~lG~p----~~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
||||+|++.+|+ -|++|||.++.. ..+..++++.+.++..++.+...+.+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~ 1059 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEA 1059 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh
Confidence 999999999997 499999987421 00112456888999999977654443
No 304
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.70 E-value=2.8e-17 Score=187.61 Aligned_cols=122 Identities=25% Similarity=0.421 Sum_probs=96.3
Q ss_pred cEEEEeeEEECCC--CCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEEC-Ccc---CCCCC--
Q 005561 537 DICLEDVYFSYPL--RPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVG-GED---LRTFD-- 608 (691)
Q Consensus 537 ~I~f~nVsF~Y~~--~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~Id-G~d---i~~i~-- 608 (691)
-|+++||+++|++ +.+.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999962 122469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -hHHhhhceEEEeccCCccc-ccHHHHHhcCCC---CCCCCHHHHHHHHHHcCcH
Q 005561 609 -KSEWARVVSIVNQEPVLFS-VSVGENIAYGLP---DENVSKDDIIKAAKAANAH 658 (691)
Q Consensus 609 -~~~lR~~Ia~V~Qd~~LF~-gTIreNI~lG~p---~~~~sdeeI~~Al~~A~l~ 658 (691)
...+|++|+||+|++.+|. -|++||+.++.. .....++++.++++..++.
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ 413 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFD 413 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 2346778999999998887 499999976311 0011234677888888884
No 305
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.70 E-value=3.9e-17 Score=186.80 Aligned_cols=123 Identities=20% Similarity=0.357 Sum_probs=98.1
Q ss_pred cEEEEeeEEECCCC-CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCCCChH
Q 005561 537 DICLEDVYFSYPLR-PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTFDKS 610 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~-~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~i~~~ 610 (691)
-|+++||+++|+++ .+.++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 124799999999999999999999999999999999999997 799999999999887654
Q ss_pred H---hh-hceEEEeccCC--ccc-ccHHHHHhcCC-----CCCCCCHHHHHHHHHHcCcHH
Q 005561 611 E---WA-RVVSIVNQEPV--LFS-VSVGENIAYGL-----PDENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 611 ~---lR-~~Ia~V~Qd~~--LF~-gTIreNI~lG~-----p~~~~sdeeI~~Al~~A~l~d 659 (691)
+ +| +.|+||+|++. ++. -|++||+.++. ......++++.++++..++.+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 145 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQ 145 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC
Confidence 3 34 57999999985 443 58999986421 111112456788999999854
No 306
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=2.6e-17 Score=187.24 Aligned_cols=122 Identities=19% Similarity=0.368 Sum_probs=96.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-CCCCeEEECCccCCCCCh-HHhhh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-PTGGRITVGGEDLRTFDK-SEWAR 614 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-p~~G~I~IdG~di~~i~~-~~lR~ 614 (691)
-|+++||+++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4999999999953223469999999999999999999999999999999999999 599999999999875543 35677
Q ss_pred ceEEEeccC---Ccc-cccHHHHHhcCCCC--------C-CCCHHHHHHHHHHcCcH
Q 005561 615 VVSIVNQEP---VLF-SVSVGENIAYGLPD--------E-NVSKDDIIKAAKAANAH 658 (691)
Q Consensus 615 ~Ia~V~Qd~---~LF-~gTIreNI~lG~p~--------~-~~sdeeI~~Al~~A~l~ 658 (691)
.++||+|++ .+| +-|+.||+.++... + ....+++.++++..++.
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 395 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVK 395 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCcc
Confidence 899999996 365 46999999875210 0 00124566777777763
No 307
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.70 E-value=4.1e-17 Score=186.24 Aligned_cols=126 Identities=22% Similarity=0.381 Sum_probs=97.1
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcC--CCCCCeEEEC---------------
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY--EPTGGRITVG--------------- 600 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly--~p~~G~I~Id--------------- 600 (691)
|+++|++++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 57899999996 246999999999999999999999999999999999996 7999999997
Q ss_pred --------CccCC-------CCC---hHHhhhceEEEecc-CCccc-ccHHHHHhcCCCCCCCC----HHHHHHHHHHcC
Q 005561 601 --------GEDLR-------TFD---KSEWARVVSIVNQE-PVLFS-VSVGENIAYGLPDENVS----KDDIIKAAKAAN 656 (691)
Q Consensus 601 --------G~di~-------~i~---~~~lR~~Ia~V~Qd-~~LF~-gTIreNI~lG~p~~~~s----deeI~~Al~~A~ 656 (691)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++......+ ++++.++++..+
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 33321 111 13467889999998 57776 59999998742110111 356778899999
Q ss_pred cHHHHhcCCc
Q 005561 657 AHDFIISLPQ 666 (691)
Q Consensus 657 l~dfI~~LP~ 666 (691)
+.++..+.|.
T Consensus 158 l~~~~~~~~~ 167 (520)
T TIGR03269 158 LSHRITHIAR 167 (520)
T ss_pred ChhhhhcCcc
Confidence 9876655443
No 308
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.70 E-value=3.1e-17 Score=186.82 Aligned_cols=117 Identities=14% Similarity=0.229 Sum_probs=94.6
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh-HHhhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~-~~lR~~ 615 (691)
-|+++|+++.|. .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999999762 28999999999999999999999999999999999999999999999998876543 456788
Q ss_pred eEEEeccC---Cccc-ccHHHHHhcCCCC-------------CCCCHHHHHHHHHHcCcH
Q 005561 616 VSIVNQEP---VLFS-VSVGENIAYGLPD-------------ENVSKDDIIKAAKAANAH 658 (691)
Q Consensus 616 Ia~V~Qd~---~LF~-gTIreNI~lG~p~-------------~~~sdeeI~~Al~~A~l~ 658 (691)
|+||+|++ .+|. -|++||+.++... ....++++.++++..++.
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 399 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC
Confidence 99999984 5775 5999999875310 000123466777777774
No 309
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.68 E-value=5.5e-17 Score=184.36 Aligned_cols=122 Identities=16% Similarity=0.278 Sum_probs=96.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-CCCeEEECCccCCCCCh-HHhhh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRITVGGEDLRTFDK-SEWAR 614 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-~~G~I~IdG~di~~i~~-~~lR~ 614 (691)
-|+++|++++|+.+.+..+|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 49999999999422234699999999999999999999999999999999999996 89999999999865543 46788
Q ss_pred ceEEEeccC---Cccc-ccHHHHHhcCCCCC-----CC----CHHHHHHHHHHcCcH
Q 005561 615 VVSIVNQEP---VLFS-VSVGENIAYGLPDE-----NV----SKDDIIKAAKAANAH 658 (691)
Q Consensus 615 ~Ia~V~Qd~---~LF~-gTIreNI~lG~p~~-----~~----sdeeI~~Al~~A~l~ 658 (691)
+|+||+|++ .+|. .|++||+.++.... .. .++++.++++..++.
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc
Confidence 999999996 3665 69999998752100 01 124566777777763
No 310
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.68 E-value=7.7e-17 Score=166.77 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=91.7
Q ss_pred EeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEE-----------ECCccCCCCCh
Q 005561 541 EDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRIT-----------VGGEDLRTFDK 609 (691)
Q Consensus 541 ~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~-----------IdG~di~~i~~ 609 (691)
.||+|+|+. ...+|+|+| .+++||++||+|+||||||||+++|+|+++|++|+|. +||+++.+...
T Consensus 4 ~~~~~~y~~--~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 478899963 236899999 5999999999999999999999999999999999996 88998877644
Q ss_pred HHhhh--ceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 610 SEWAR--VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 610 ~~lR~--~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
+..|. .+++++|++.++..++.+|+....... -.++++.++++..++.+...+.+.
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~l~~~gl~~~~~~~~~ 138 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKK-DERGKLDELVDQLELRHVLDRNID 138 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchh-HHHHHHHHHHHHcCCchhhcCChh
Confidence 33333 478888877766655555554321111 135678899999998776655443
No 311
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.68 E-value=3.3e-17 Score=190.15 Aligned_cols=99 Identities=24% Similarity=0.357 Sum_probs=85.3
Q ss_pred CcEEEEeeEEECCCC------CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC---CCeEEECCccCCC
Q 005561 536 GDICLEDVYFSYPLR------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRT 606 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~------~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~---~G~I~IdG~di~~ 606 (691)
.+++|.++. +++.. .++++|+|+|++|++||.+||+|+||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 16 ~~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~- 93 (617)
T TIGR00955 16 QDGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID- 93 (617)
T ss_pred ccchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC-
Confidence 357777776 66422 2467999999999999999999999999999999999999885 799999999865
Q ss_pred CChHHhhhceEEEeccCCccc-ccHHHHHhcCC
Q 005561 607 FDKSEWARVVSIVNQEPVLFS-VSVGENIAYGL 638 (691)
Q Consensus 607 i~~~~lR~~Ia~V~Qd~~LF~-gTIreNI~lG~ 638 (691)
...+|+.++||+|++.+|. .||+|||.|+.
T Consensus 94 --~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~ 124 (617)
T TIGR00955 94 --AKEMRAISAYVQQDDLFIPTLTVREHLMFQA 124 (617)
T ss_pred --HHHHhhhceeeccccccCccCcHHHHHHHHH
Confidence 4678999999999999995 59999998763
No 312
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.68 E-value=1.3e-16 Score=199.09 Aligned_cols=124 Identities=29% Similarity=0.450 Sum_probs=100.5
Q ss_pred cEEEEeeEEECCCC-CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC---CCCCeEEECCccCCCCChHHh
Q 005561 537 DICLEDVYFSYPLR-PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE---PTGGRITVGGEDLRTFDKSEW 612 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~-~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~---p~~G~I~IdG~di~~i~~~~l 612 (691)
.++++||+++|+.+ .++.+|+|+|++|++||.+||+|+||||||||+++|+|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 37999999999632 23579999999999999999999999999999999999998 78899999999874 257
Q ss_pred hhceEEEeccCC-cccccHHHHHhcCC----CCCCCCH----HHHHHHHHHcCcHHHHhcCC
Q 005561 613 ARVVSIVNQEPV-LFSVSVGENIAYGL----PDENVSK----DDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 613 R~~Ia~V~Qd~~-LF~gTIreNI~lG~----p~~~~sd----eeI~~Al~~A~l~dfI~~LP 665 (691)
|+.++||+|++. +++.||||||.++. |. +.++ +++.++++..++.+..+..+
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~-~~~~~~~~~~v~~~l~~l~L~~~~d~~v 895 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPK-SVSKSEKMEYVEEVIKLLEMESYADAVV 895 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHcCChhhCCCee
Confidence 899999999865 56789999999752 22 2333 34678888888876554433
No 313
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.68 E-value=1.4e-16 Score=199.85 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=105.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++|++++|++ .+..+|+|+||+|++||.+||+|++|||||||+|+|+|+.+|++|+|.++|.++.+ +....|++|
T Consensus 1937 ~L~v~nLsK~Y~~-~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECC-CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 5999999999963 23579999999999999999999999999999999999999999999999999865 456788999
Q ss_pred EEEeccCCccc-ccHHHHHhcC-----CCCCCCCHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 617 SIVNQEPVLFS-VSVGENIAYG-----LPDENVSKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG-----~p~~~~sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
||++|++.++. -|++|||.+. .+.. ..++.+.++++..++.++..+.+..
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~-~~~~~v~~lLe~lgL~~~~dk~~~~ 2070 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAE-EIEKVANWSIQSLGLSLYADRLAGT 2070 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHcCCHHHhcCChhh
Confidence 99999999986 5999999762 2211 1123456788899998876555443
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.68 E-value=1.1e-16 Score=183.88 Aligned_cols=88 Identities=27% Similarity=0.349 Sum_probs=80.0
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++||+++|++ +.++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++. ..|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 4999999999962 356999999999999999999999999999999999999999999999752 469
Q ss_pred EEEeccCCcccc-cHHHHHhcC
Q 005561 617 SIVNQEPVLFSV-SVGENIAYG 637 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG 637 (691)
+||+|++.+|+. |++||+.++
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~ 94 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEG 94 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHh
Confidence 999999999975 999999875
No 315
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.67 E-value=1.3e-16 Score=162.18 Aligned_cols=112 Identities=24% Similarity=0.258 Sum_probs=83.8
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
+.++|++.+|+ +.++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.... ...
T Consensus 23 l~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-----~~~- 93 (224)
T cd03220 23 LGILGRKGEVG---EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG-----LGG- 93 (224)
T ss_pred hhhhhhhhhcC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhc-----ccc-
Confidence 66778888885 357999999999999999999999999999999999999999999999998764211 111
Q ss_pred EEeccCCcccccHHHHHhcCCCCCCCC----HHHHHHHHHHcCcHHHHhc
Q 005561 618 IVNQEPVLFSVSVGENIAYGLPDENVS----KDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 618 ~V~Qd~~LF~gTIreNI~lG~p~~~~s----deeI~~Al~~A~l~dfI~~ 663 (691)
.+..+.|++||+.++......+ ++++.++++..++.+....
T Consensus 94 -----~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 138 (224)
T cd03220 94 -----GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDL 138 (224)
T ss_pred -----cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC
Confidence 1234679999998753211112 2346677777777665433
No 316
>PLN03211 ABC transporter G-25; Provisional
Probab=99.67 E-value=1.1e-16 Score=186.19 Aligned_cols=112 Identities=22% Similarity=0.355 Sum_probs=88.3
Q ss_pred EEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC--CCeEEECCccCCCCChHHhhhceE
Q 005561 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT--GGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~--~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
.+|++.+|+ ++.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||.++. ...+++++
T Consensus 71 ~~~l~~~~~---~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~ 143 (659)
T PLN03211 71 ISDETRQIQ---ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTG 143 (659)
T ss_pred cccccccCC---CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceE
Confidence 334444453 346999999999999999999999999999999999999985 899999999874 24567899
Q ss_pred EEeccCCccc-ccHHHHHhcCC----CCCCCCHH----HHHHHHHHcCcHH
Q 005561 618 IVNQEPVLFS-VSVGENIAYGL----PDENVSKD----DIIKAAKAANAHD 659 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~----p~~~~sde----eI~~Al~~A~l~d 659 (691)
||+|++.+|. .||+|||.++. |. +.+++ ++.+.++..++.+
T Consensus 144 yv~Q~~~l~~~lTV~E~l~~~a~~~~~~-~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 144 FVTQDDILYPHLTVRETLVFCSLLRLPK-SLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred EECcccccCCcCCHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHcCChh
Confidence 9999999995 59999998752 21 23333 3556667777755
No 317
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.67 E-value=1.2e-16 Score=162.23 Aligned_cols=102 Identities=21% Similarity=0.316 Sum_probs=83.4
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCc---ccccHHHHHhcC
Q 005561 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVL---FSVSVGENIAYG 637 (691)
Q Consensus 561 L~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~L---F~gTIreNI~lG 637 (691)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..|++++||+|++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998764 357889999999977 468999999875
Q ss_pred CC-------CC-CCCHHHHHHHHHHcCcHHHHhcCCcc
Q 005561 638 LP-------DE-NVSKDDIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 638 ~p-------~~-~~sdeeI~~Al~~A~l~dfI~~LP~G 667 (691)
.. .. ...++++.++++..++.++....+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 113 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE 113 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhh
Confidence 21 00 12345688999999998776655443
No 318
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.66 E-value=1.7e-16 Score=162.05 Aligned_cols=102 Identities=31% Similarity=0.458 Sum_probs=82.5
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC----CCCeEEECCccCCCCChHHhhhceEEEeccCC-ccc--
Q 005561 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP----TGGRITVGGEDLRTFDKSEWARVVSIVNQEPV-LFS-- 627 (691)
Q Consensus 555 vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p----~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~-LF~-- 627 (691)
+|+|+||+|++||.++|+|++|||||||+++|+|+++| ++|+|.+||.++... +..++.++||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999988754 223468999999995 454
Q ss_pred ccHHHHHhcCCC----CCCCCHHHHHHHHHHcCcH
Q 005561 628 VSVGENIAYGLP----DENVSKDDIIKAAKAANAH 658 (691)
Q Consensus 628 gTIreNI~lG~p----~~~~sdeeI~~Al~~A~l~ 658 (691)
-|+.||+.++.. .....++++.++++..++.
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 113 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLP 113 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCC
Confidence 589999864311 0111245688899998886
No 319
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.5e-16 Score=178.99 Aligned_cols=86 Identities=19% Similarity=0.444 Sum_probs=78.8
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++|++|+|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|. ..|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999962 46999999999999999999999999999999999999999999999983 4699
Q ss_pred EEeccCCcccc-cHHHHHhcC
Q 005561 618 IVNQEPVLFSV-SVGENIAYG 637 (691)
Q Consensus 618 ~V~Qd~~LF~g-TIreNI~lG 637 (691)
||+|++.+|.. |++||+.++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~ 88 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMG 88 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHh
Confidence 99999988864 999999865
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.66 E-value=2.2e-16 Score=181.34 Aligned_cols=88 Identities=27% Similarity=0.357 Sum_probs=79.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++||+++|++ +.++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 34699999999999999999999999999999999999999999999986 2469
Q ss_pred EEEeccCCccc-ccHHHHHhcC
Q 005561 617 SIVNQEPVLFS-VSVGENIAYG 637 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG 637 (691)
+||+|++.+|. -|++|||.++
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~ 92 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEG 92 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHh
Confidence 99999999986 5999999875
No 321
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.65 E-value=2.7e-16 Score=178.25 Aligned_cols=120 Identities=22% Similarity=0.198 Sum_probs=94.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-CCCeEEECCccCCC-CChHHhhh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRITVGGEDLRT-FDKSEWAR 614 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-~~G~I~IdG~di~~-i~~~~lR~ 614 (691)
-|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 4999999999962 3589999999999999999999999999999999998876 69999999987632 23345788
Q ss_pred ceEEEeccCCccc---ccHHHHHhcCCCC--------CCCCHHHHHHHHHHcCcHH
Q 005561 615 VVSIVNQEPVLFS---VSVGENIAYGLPD--------ENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~---gTIreNI~lG~p~--------~~~sdeeI~~Al~~A~l~d 659 (691)
+|+||+|++.++. .|++||+.++..+ ....++++.++++..++.+
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 392 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDK 392 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCch
Confidence 9999999987643 4777777543110 0011356788899988875
No 322
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.65 E-value=4.3e-16 Score=160.44 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=85.2
Q ss_pred EECCCCCCcccccceeEEEe-----CCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEE
Q 005561 545 FSYPLRPDVVILNGLNLTLK-----SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIV 619 (691)
Q Consensus 545 F~Y~~~~~~~vL~~IsL~I~-----~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V 619 (691)
|+|++ ....++|++|+++ +||+++|+|+||||||||+++|+|+++|++|+|.++|. .|+|+
T Consensus 1 ~~y~~--~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPT--MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCcc--cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 67873 3458999999997 68999999999999999999999999999999999995 59999
Q ss_pred eccCC-cccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCC
Q 005561 620 NQEPV-LFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLP 665 (691)
Q Consensus 620 ~Qd~~-LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP 665 (691)
+|++. .|+.|++||+.+.........+...++++..++.+.....+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 113 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREV 113 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCCh
Confidence 99987 47899999997643211112334567888888876654433
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.5e-16 Score=176.79 Aligned_cols=114 Identities=17% Similarity=0.222 Sum_probs=93.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +.+
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999983 579
Q ss_pred EEEeccCC--cc-cccHHHHHhcCCCCCCCCHHHHHHHHHHcCc-HHHHhcCC
Q 005561 617 SIVNQEPV--LF-SVSVGENIAYGLPDENVSKDDIIKAAKAANA-HDFIISLP 665 (691)
Q Consensus 617 a~V~Qd~~--LF-~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l-~dfI~~LP 665 (691)
+||+|++. ++ +.|++||+.+.... ...++++.++++..++ .+.....|
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~ 436 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQE-GDDEQAVRGTLGRLLFSQDDIKKSV 436 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccC-CccHHHHHHHHHHcCCChhHhcCcc
Confidence 99999974 44 36999999753211 1346778899999988 34444333
No 324
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.9e-16 Score=150.53 Aligned_cols=124 Identities=20% Similarity=0.359 Sum_probs=102.5
Q ss_pred EEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEE
Q 005561 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIV 619 (691)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V 619 (691)
.+|++.. +.+..++.++||++.+||.+-|+||+|||||||+++|+|+.+|++|+|.++|.++..... ..++.+-|+
T Consensus 5 a~~L~~~---R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~~l~yL 80 (209)
T COG4133 5 AENLSCE---RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQALLYL 80 (209)
T ss_pred hhhhhhc---cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHHHHHHh
Confidence 3455433 345678999999999999999999999999999999999999999999999999887654 357888888
Q ss_pred eccCCcc-cccHHHHHhcCCCCCC-CCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 620 NQEPVLF-SVSVGENIAYGLPDEN-VSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 620 ~Qd~~LF-~gTIreNI~lG~p~~~-~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
.-.+-+= .-|++||+.|+..... .+++.+++|++.+++.+ ++++|-++
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dlp~~~ 130 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDLPVGQ 130 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccc-ccccchhh
Confidence 8888775 4599999999865322 46899999999999987 45666554
No 325
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.64 E-value=3e-16 Score=150.51 Aligned_cols=133 Identities=23% Similarity=0.353 Sum_probs=106.6
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
+++.+++-+|++ ...+++|+||+++.||.+||.|++||||||+++.|+.|..|++|+|.|||.|....+ ...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcc
Confidence 678899999974 345899999999999999999999999999999999999999999999999987655 57899999
Q ss_pred EEeccCCccc-ccHHHHHhcCC-CC---CCCCHHHHHHHHHHcCcHHHHh----cCCcccccchh
Q 005561 618 IVNQEPVLFS-VSVGENIAYGL-PD---ENVSKDDIIKAAKAANAHDFII----SLPQVWLSKSH 673 (691)
Q Consensus 618 ~V~Qd~~LF~-gTIreNI~lG~-p~---~~~sdeeI~~Al~~A~l~dfI~----~LP~GydT~~~ 673 (691)
+++-+.-|+. -|.||||.|.. -+ ..-.+.++.+..+.-++.|.+. .+..||.+.+-
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~ 143 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVA 143 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHH
Confidence 9998888886 59999998631 10 0113456666677777766654 56667766553
No 326
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.64 E-value=9.4e-16 Score=169.99 Aligned_cols=118 Identities=22% Similarity=0.285 Sum_probs=90.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.++++|++|+|+++..+++|+|+||+|++|+++||+|++|||||||+++|+|+++|++|+|.+||.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999754335799999999999999999999999999999999999999999999999751
Q ss_pred EEEeccCCccc-ccHHHHHhcCCCCCCCCHH----HHHHHHHHcCcHHHHhcCCcc
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGLPDENVSKD----DIIKAAKAANAHDFIISLPQV 667 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~p~~~~sde----eI~~Al~~A~l~dfI~~LP~G 667 (691)
++.+++.++. .|++|||.++......+++ ++.++++..++.+++.+.+..
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~ 143 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKT 143 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCccc
Confidence 2233444443 5999999874210112333 355678889998887665543
No 327
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.64 E-value=3.3e-16 Score=178.00 Aligned_cols=113 Identities=19% Similarity=0.290 Sum_probs=91.6
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh-HHhhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~-~~lR~~ 615 (691)
-|+++|+++ ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999984 26999999999999999999999999999999999999999999999999887764 346788
Q ss_pred eEEEeccC---Ccc-cccHHHHHhcCCCC---------C-CCCHHHHHHHHHHcCc
Q 005561 616 VSIVNQEP---VLF-SVSVGENIAYGLPD---------E-NVSKDDIIKAAKAANA 657 (691)
Q Consensus 616 Ia~V~Qd~---~LF-~gTIreNI~lG~p~---------~-~~sdeeI~~Al~~A~l 657 (691)
|+||+|++ .+| +.|++||+.++... . ...++++.++++..++
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 384 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNI 384 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCC
Confidence 99999997 354 46999999874210 0 0113456677777776
No 328
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.64 E-value=9.8e-16 Score=169.19 Aligned_cols=130 Identities=24% Similarity=0.389 Sum_probs=102.1
Q ss_pred cEEEEeeEEECCCC--------CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCcc--CCC
Q 005561 537 DICLEDVYFSYPLR--------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED--LRT 606 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~--------~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~d--i~~ 606 (691)
-++++|++..|..+ ....+++||||++++||++||||+||||||||+++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999742 12468999999999999999999999999999999999999999999999987 332
Q ss_pred CChHHhhhceEEEeccCCcc---cccHHHHHhcC----CCCC-CCCHHHHHHHHHHcCcHH-HHhcCCc
Q 005561 607 FDKSEWARVVSIVNQEPVLF---SVSVGENIAYG----LPDE-NVSKDDIIKAAKAANAHD-FIISLPQ 666 (691)
Q Consensus 607 i~~~~lR~~Ia~V~Qd~~LF---~gTIreNI~lG----~p~~-~~sdeeI~~Al~~A~l~d-fI~~LP~ 666 (691)
-+...+|+.+-+|+|||+=. ..||+++|.-- .+.. ....+.+.+.++.+++.. +..+.|+
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~ 428 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPH 428 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCch
Confidence 33456788999999999854 57999999631 1110 122345777888898865 6666665
No 329
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.63 E-value=1.3e-15 Score=158.52 Aligned_cols=101 Identities=26% Similarity=0.388 Sum_probs=80.0
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCccc-ccHH
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS-VSVG 631 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~-gTIr 631 (691)
.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||. ++++.|++.+++ .|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 46899999999999999999999999999999999999999999999994 567888887764 6999
Q ss_pred HHHhcCCCCCCCCHHH----HHHHHHHcCcHHHHhcCCc
Q 005561 632 ENIAYGLPDENVSKDD----IIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 632 eNI~lG~p~~~~sdee----I~~Al~~A~l~dfI~~LP~ 666 (691)
||+.++......+.++ +.++++..++.+++...+.
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVK 142 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcc
Confidence 9998642111123333 3456777788877765443
No 330
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.62 E-value=5.4e-16 Score=176.20 Aligned_cols=114 Identities=16% Similarity=0.274 Sum_probs=91.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh-HHhhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~-~~lR~~ 615 (691)
.++++|+++. .+++|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++...+. +..|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999842 38999999999999999999999999999999999999999999999998875543 456789
Q ss_pred eEEEeccCC---cc-cccHHHHHhcCCCCC----------CCCHHHHHHHHHHcCc
Q 005561 616 VSIVNQEPV---LF-SVSVGENIAYGLPDE----------NVSKDDIIKAAKAANA 657 (691)
Q Consensus 616 Ia~V~Qd~~---LF-~gTIreNI~lG~p~~----------~~sdeeI~~Al~~A~l 657 (691)
++|++|++. +| +.|+.||+.++.... ...++++.++++..++
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 385 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNI 385 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCc
Confidence 999999973 55 579999998753110 0012456777777777
No 331
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.62 E-value=9.5e-16 Score=155.15 Aligned_cols=100 Identities=24% Similarity=0.492 Sum_probs=82.8
Q ss_pred cEEEEeeEEECCCCCC------cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH
Q 005561 537 DICLEDVYFSYPLRPD------VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS 610 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~------~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~ 610 (691)
-++.+|++..|+.+.. ..+++||||+|++||+++|||+|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3789999999974321 36899999999999999999999999999999999999999999999999988777
Q ss_pred HhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHH-HHhcCCccc
Q 005561 611 EWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHD-FIISLPQVW 668 (691)
Q Consensus 611 ~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~d-fI~~LP~Gy 668 (691)
+ + ..++++.+.++.+|+.+ +..+.|+-+
T Consensus 82 ---------------------------~-~--~~~~~v~elL~~Vgl~~~~~~ryPhel 110 (268)
T COG4608 82 ---------------------------K-E--ERRERVLELLEKVGLPEEFLYRYPHEL 110 (268)
T ss_pred ---------------------------h-h--HHHHHHHHHHHHhCCCHHHhhcCCccc
Confidence 1 1 23567888888888754 666666644
No 332
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.61 E-value=2.4e-15 Score=172.83 Aligned_cols=108 Identities=24% Similarity=0.330 Sum_probs=88.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+++. + .|
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~----------~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET-V----------KL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-e----------EE
Confidence 5999999999963 46999999999999999999999999999999999999999999999552 1 59
Q ss_pred EEEeccC-Cccc-ccHHHHHhcCCCCC--CCCHHHHHHHHHHcCcH
Q 005561 617 SIVNQEP-VLFS-VSVGENIAYGLPDE--NVSKDDIIKAAKAANAH 658 (691)
Q Consensus 617 a~V~Qd~-~LF~-gTIreNI~lG~p~~--~~sdeeI~~Al~~A~l~ 658 (691)
+||+|++ .++. -|++||+.++.... ...+++..++++..++.
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~ 435 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFK 435 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCC
Confidence 9999997 5654 59999998763210 11244566788888874
No 333
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.61 E-value=1.4e-15 Score=157.17 Aligned_cols=129 Identities=24% Similarity=0.490 Sum_probs=97.2
Q ss_pred EEEEeeEEECCCCC-CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC-C----CCCeEEECCccCCCCChHH
Q 005561 538 ICLEDVYFSYPLRP-DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE-P----TGGRITVGGEDLRTFDKSE 611 (691)
Q Consensus 538 I~f~nVsF~Y~~~~-~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-p----~~G~I~IdG~di~~i~~~~ 611 (691)
++++|++..|.... ...+++||||+|++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57889998887432 2468999999999999999999999999999999999998 3 6799999999999999876
Q ss_pred hh----hceEEEeccCCc-cc--ccHH----HHHhcCCCC--CCCCHHHHHHHHHHcCcHH---HHhcCCc
Q 005561 612 WA----RVVSIVNQEPVL-FS--VSVG----ENIAYGLPD--ENVSKDDIIKAAKAANAHD---FIISLPQ 666 (691)
Q Consensus 612 lR----~~Ia~V~Qd~~L-F~--gTIr----eNI~lG~p~--~~~sdeeI~~Al~~A~l~d---fI~~LP~ 666 (691)
+| +.|++|+|||.- || -||. |=+..-... ..--.+++.++++.+++.+ .+.+.|.
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPh 152 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH 152 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCc
Confidence 54 389999999753 33 2343 444432110 0011457889999999965 4455554
No 334
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.61 E-value=1.3e-15 Score=143.95 Aligned_cols=70 Identities=36% Similarity=0.542 Sum_probs=64.9
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
++++|++++|++ .++++|+||++++||.++|+|++|||||||+++|+|+++|++|+|.+||. +.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999963 36999999999999999999999999999999999999999999999994 4799
Q ss_pred EEec
Q 005561 618 IVNQ 621 (691)
Q Consensus 618 ~V~Q 621 (691)
|++|
T Consensus 67 ~~~~ 70 (144)
T cd03221 67 YFEQ 70 (144)
T ss_pred EEcc
Confidence 9999
No 335
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=1.7e-15 Score=145.28 Aligned_cols=79 Identities=37% Similarity=0.638 Sum_probs=74.4
Q ss_pred EEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEE
Q 005561 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIV 619 (691)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V 619 (691)
++|++|.|++ .++++++||+|++|+.++|+|++|||||||+++|+|+++|++|+|.+||.++.+.....+++.++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6899999973 3699999999999999999999999999999999999999999999999999888788889999999
Q ss_pred ec
Q 005561 620 NQ 621 (691)
Q Consensus 620 ~Q 621 (691)
+|
T Consensus 79 ~q 80 (157)
T cd00267 79 PQ 80 (157)
T ss_pred ee
Confidence 99
No 336
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1e-15 Score=153.34 Aligned_cols=110 Identities=25% Similarity=0.388 Sum_probs=97.2
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCC----CChHHhhhceEEEeccCCcc-cccHH
Q 005561 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT----FDKSEWARVVSIVNQEPVLF-SVSVG 631 (691)
Q Consensus 557 ~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~----i~~~~lR~~Ia~V~Qd~~LF-~gTIr 631 (691)
=++||+.+.-..+||-|+||||||||+|+++|+..|++|+|.+||.-+.+ +...--+++||||+||..|| +-|||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 36788888889999999999999999999999999999999999986644 44556789999999999999 57999
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 632 ENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 632 eNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
-|++||.-. .+.++..+++..-|+.....++|.-+
T Consensus 95 gNL~YG~~~--~~~~~fd~iv~lLGI~hLL~R~P~~L 129 (352)
T COG4148 95 GNLRYGMWK--SMRAQFDQLVALLGIEHLLDRYPGTL 129 (352)
T ss_pred cchhhhhcc--cchHhHHHHHHHhCcHHHHhhCCCcc
Confidence 999999754 46789999999999999999999743
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.61 E-value=3.1e-15 Score=174.41 Aligned_cols=122 Identities=21% Similarity=0.290 Sum_probs=94.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++||+++|++ .++|+|+||+|++|+++||||++|||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999962 46999999999999999999999999999999999999999999999 4432 59
Q ss_pred EEEeccC-Cccc-ccHHHHHhcCCCCCCC--CHHHHHHHHHHcCcH-H----HHhcCCcccccch
Q 005561 617 SIVNQEP-VLFS-VSVGENIAYGLPDENV--SKDDIIKAAKAANAH-D----FIISLPQVWLSKS 672 (691)
Q Consensus 617 a~V~Qd~-~LF~-gTIreNI~lG~p~~~~--sdeeI~~Al~~A~l~-d----fI~~LP~GydT~~ 672 (691)
+|++|++ .++. .||.||+.++.+.... .++++.+.++..++. + .+..|..|-...+
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl 449 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRL 449 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHH
Confidence 9999986 4655 4999999876432111 145677777777763 3 3444555544433
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.61 E-value=3e-15 Score=171.98 Aligned_cols=108 Identities=23% Similarity=0.325 Sum_probs=88.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++|++++|++ .++|+|+||+|++|+++||+|++|||||||+++|+|+.+|++|+|.+++ ++ .|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EE
Confidence 4999999999963 4699999999999999999999999999999999999999999999955 21 59
Q ss_pred EEEeccCC-ccc-ccHHHHHhcCCCCCCC--CHHHHHHHHHHcCcH
Q 005561 617 SIVNQEPV-LFS-VSVGENIAYGLPDENV--SKDDIIKAAKAANAH 658 (691)
Q Consensus 617 a~V~Qd~~-LF~-gTIreNI~lG~p~~~~--sdeeI~~Al~~A~l~ 658 (691)
+||+|++. ++. -|++||+.++...... .+++..++++..++.
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~ 433 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFK 433 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCC
Confidence 99999973 554 5999999986421111 234566778888874
No 339
>PLN03140 ABC transporter G family member; Provisional
Probab=99.58 E-value=7.2e-15 Score=183.20 Aligned_cols=125 Identities=24% Similarity=0.389 Sum_probs=100.4
Q ss_pred CcEEEEeeEEECCCC----------CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC--CCCeEEECCcc
Q 005561 536 GDICLEDVYFSYPLR----------PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP--TGGRITVGGED 603 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~----------~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p--~~G~I~IdG~d 603 (691)
..+.|+||+|.++.. ....+|+|+|++|++|+.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 369999999987521 123699999999999999999999999999999999999874 78999999987
Q ss_pred CCCCChHHhhhceEEEeccCCccc-ccHHHHHhcCC----CCCCCCHH----HHHHHHHHcCcHHHHhcC
Q 005561 604 LRTFDKSEWARVVSIVNQEPVLFS-VSVGENIAYGL----PDENVSKD----DIIKAAKAANAHDFIISL 664 (691)
Q Consensus 604 i~~i~~~~lR~~Ia~V~Qd~~LF~-gTIreNI~lG~----p~~~~sde----eI~~Al~~A~l~dfI~~L 664 (691)
.+ ...+|+.+|||+|++.++. .||+|||.++. |. +.+++ .+.++++..++.+.-+..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~-~~~~~~~~~~v~~vl~~lgL~~~~~~~ 1011 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPK-EVSKEEKMMFVDEVMELVELDNLKDAI 1011 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHCCChhHhCCc
Confidence 64 3467888999999987775 59999998742 21 23333 377888889987765544
No 340
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.58 E-value=2.8e-15 Score=151.16 Aligned_cols=70 Identities=19% Similarity=0.365 Sum_probs=62.1
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEE-ECCccCCCCChHHhhhceEEEeccCCcccc-cHHH
Q 005561 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRIT-VGGEDLRTFDKSEWARVVSIVNQEPVLFSV-SVGE 632 (691)
Q Consensus 555 vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~-IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~g-TIre 632 (691)
+|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|.+ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 887643 13467888876 9999
Q ss_pred HHhcC
Q 005561 633 NIAYG 637 (691)
Q Consensus 633 NI~lG 637 (691)
||.+.
T Consensus 69 nl~~~ 73 (213)
T PRK15177 69 NARMM 73 (213)
T ss_pred HHHHH
Confidence 99874
No 341
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.57 E-value=4.7e-15 Score=168.82 Aligned_cols=114 Identities=18% Similarity=0.317 Sum_probs=90.2
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHH-hhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSE-WARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~-lR~~ 615 (691)
-|+++|++. .+|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1599999999999999999999999999999999999999999999999998776554 4678
Q ss_pred eEEEeccC---Cccc-ccHHHHHhcC---C-C---CCCCCHHHHHHHHHHcCcH
Q 005561 616 VSIVNQEP---VLFS-VSVGENIAYG---L-P---DENVSKDDIIKAAKAANAH 658 (691)
Q Consensus 616 Ia~V~Qd~---~LF~-gTIreNI~lG---~-p---~~~~sdeeI~~Al~~A~l~ 658 (691)
|+||+|++ .+|. -|+.||+... . + .....++++.++++..++.
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK 393 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC
Confidence 99999986 3665 4999998532 0 1 0011223466777777764
No 342
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.2e-15 Score=168.54 Aligned_cols=92 Identities=18% Similarity=0.348 Sum_probs=80.2
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH-Hhhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS-EWARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~-~lR~~ 615 (691)
.|+++|++++| .++|+|+||+|++||++||+|++|||||||+++|+|+.+|++|+|.+||.++...+.. .+|+.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 49999999975 2489999999999999999999999999999999999999999999999999877654 45778
Q ss_pred eEEEeccCC---ccc-ccHHHH
Q 005561 616 VSIVNQEPV---LFS-VSVGEN 633 (691)
Q Consensus 616 Ia~V~Qd~~---LF~-gTIreN 633 (691)
++|++|++. +|. .|+.+|
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~ 346 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFN 346 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHh
Confidence 999999963 565 467666
No 343
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.56 E-value=6.5e-15 Score=162.75 Aligned_cols=127 Identities=17% Similarity=0.333 Sum_probs=101.1
Q ss_pred cEEEEeeEEECCCCCC-cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC----CCeEEECCccCCCCChHH
Q 005561 537 DICLEDVYFSYPLRPD-VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT----GGRITVGGEDLRTFDKSE 611 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~-~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~----~G~I~IdG~di~~i~~~~ 611 (691)
-++++|++..|..... ..+++||||+|.+||.+||||+|||||||+++.|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999875422 25999999999999999999999999999999999999988 899999999999999876
Q ss_pred hh----hceEEEeccCC-cccc--cHHHHHh----cCCCC-CCCCHHHHHHHHHHcCcHHHHhc
Q 005561 612 WA----RVVSIVNQEPV-LFSV--SVGENIA----YGLPD-ENVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 612 lR----~~Ia~V~Qd~~-LF~g--TIreNI~----lG~p~-~~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
+| +.|+||+|||+ .+|- ||.+-|+ ...+. .+.-.++..+.++.+++.+-...
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh
Confidence 65 47999999985 5664 6666553 22111 11235678888999999665554
No 344
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.56 E-value=3.8e-15 Score=144.34 Aligned_cols=119 Identities=24% Similarity=0.378 Sum_probs=92.9
Q ss_pred CCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCc--c-c
Q 005561 551 PDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVL--F-S 627 (691)
Q Consensus 551 ~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~L--F-~ 627 (691)
.++++|+++||+|++|++|-|+|.+|||||||++.|+|-..|++|+|+|||+|+..++...--..++=|+|||-. + +
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 356899999999999999999999999999999999999999999999999999999999888899999999974 3 4
Q ss_pred ccHHHHHhcCCCCC-CCCHHHHHHHHHHcCcHHHHhcCCcccc
Q 005561 628 VSVGENIAYGLPDE-NVSKDDIIKAAKAANAHDFIISLPQVWL 669 (691)
Q Consensus 628 gTIreNI~lG~p~~-~~sdeeI~~Al~~A~l~dfI~~LP~Gyd 669 (691)
-||.||+.++.... ......-...-+.....+-+..+|.|++
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe 139 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE 139 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh
Confidence 59999999863210 0001111122233334455666777654
No 345
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=8.6e-15 Score=145.47 Aligned_cols=107 Identities=25% Similarity=0.416 Sum_probs=79.3
Q ss_pred CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHH
Q 005561 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (691)
Q Consensus 552 ~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIr 631 (691)
..++|+||||++++||++||||++|||||||+|+|+|.|+|++|+|.++|.--.-+.. ..|+-|| -|-|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~pe------lTGr 107 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDPE------LTGR 107 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCcc------cchH
Confidence 3568999999999999999999999999999999999999999999999962111111 1333333 5899
Q ss_pred HHHhc-----CCCCCCCCHHHHHHHHHHcCcHHHHhcCCccccc
Q 005561 632 ENIAY-----GLPDENVSKDDIIKAAKAANAHDFIISLPQVWLS 670 (691)
Q Consensus 632 eNI~l-----G~p~~~~sdeeI~~Al~~A~l~dfI~~LP~GydT 670 (691)
|||.+ |... ..-++.+.+..+-|.+.||+..==.-|-+
T Consensus 108 eNi~l~~~~~G~~~-~ei~~~~~eIieFaELG~fi~~PvktYSS 150 (249)
T COG1134 108 ENIYLRGLILGLTR-KEIDEKVDEIIEFAELGDFIDQPVKTYSS 150 (249)
T ss_pred HHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHhhCchhhccH
Confidence 99964 3211 12455667778889999999653333433
No 346
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.55 E-value=5.2e-15 Score=146.87 Aligned_cols=120 Identities=24% Similarity=0.334 Sum_probs=96.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCCh-HHhhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDK-SEWARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~-~~lR~~ 615 (691)
-|+|+||++.|. ++++|+|||++|++||+-+|+|++|||||||+++++|.+.|++|.+.+-|+....-+. .++|++
T Consensus 31 li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 499999999996 4689999999999999999999999999999999999999999999999999988887 999999
Q ss_pred eEEEeccC---CcccccHHHHHhc------CCCCCCCCHHHH---HHHHHHcCcHH
Q 005561 616 VSIVNQEP---VLFSVSVGENIAY------GLPDENVSKDDI---IKAAKAANAHD 659 (691)
Q Consensus 616 Ia~V~Qd~---~LF~gTIreNI~l------G~p~~~~sdeeI---~~Al~~A~l~d 659 (691)
||+|+-+- +.=+.+++|=+.= |....+.++++. ...++..++.+
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~ 163 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH 163 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh
Confidence 99998432 3335667776642 322223555554 44556667665
No 347
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.8e-14 Score=140.10 Aligned_cols=124 Identities=25% Similarity=0.343 Sum_probs=103.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhc--CCCCCCeEEECCccCCCCChHH-hh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--YEPTGGRITVGGEDLRTFDKSE-WA 613 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gl--y~p~~G~I~IdG~di~~i~~~~-lR 613 (691)
-++++|++.+-.+ .+++|+++||+|++||..||.||+|||||||.+.|+|. |++++|+|++||+||.+++.++ -|
T Consensus 3 ~L~I~dLhv~v~~--~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEG--KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecC--chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 3789999988752 14799999999999999999999999999999999996 5899999999999999999875 56
Q ss_pred hceEEEeccCCcccc-cHHHHHhcCCCC----C---CCCHHHHHHHHHHcCcHH-HHh
Q 005561 614 RVVSIVNQEPVLFSV-SVGENIAYGLPD----E---NVSKDDIIKAAKAANAHD-FII 662 (691)
Q Consensus 614 ~~Ia~V~Qd~~LF~g-TIreNI~lG~p~----~---~~sdeeI~~Al~~A~l~d-fI~ 662 (691)
.-|.+-.|.|.=+.| |+.+=++.+... . ....+++.++++..++++ |.+
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~ 138 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE 138 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhh
Confidence 789999999999988 788877643211 0 023678899999999987 443
No 348
>PLN03073 ABC transporter F family; Provisional
Probab=99.54 E-value=2.6e-14 Score=167.43 Aligned_cols=109 Identities=22% Similarity=0.312 Sum_probs=87.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++||+|+|++ ..++|+|+||+|++|+++||+|+||||||||+++|+|+.+|++|+|.+++ +..|
T Consensus 508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 5999999999963 34689999999999999999999999999999999999999999999876 2469
Q ss_pred EEEeccCCcccccHHHHHhc--CCCCCCCCHHHHHHHHHHcCcHH
Q 005561 617 SIVNQEPVLFSVSVGENIAY--GLPDENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 617 a~V~Qd~~LF~gTIreNI~l--G~p~~~~sdeeI~~Al~~A~l~d 659 (691)
+|++|++. ..-++.+|+.+ .......+++++.++++..++.+
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~ 618 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG 618 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh
Confidence 99999863 33356666432 11011246788999999999963
No 349
>PRK13409 putative ATPase RIL; Provisional
Probab=99.53 E-value=2.7e-14 Score=164.31 Aligned_cols=112 Identities=19% Similarity=0.118 Sum_probs=92.6
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-++++|++++|++ ..|+++||+|++||.+||+|++|||||||+++|+|+.+|++|+|.++ ..|
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999962 24999999999999999999999999999999999999999999986 159
Q ss_pred EEEeccCCc-ccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 617 SIVNQEPVL-FSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 617 a~V~Qd~~L-F~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
+|++|++.+ ++.|++||+.++.... -.++.+.++++..++.+...+.|.
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~ 452 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDL-GSSYYKSEIIKPLQLERLLDKNVK 452 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhc-ChHHHHHHHHHHCCCHHHHhCCcc
Confidence 999999875 5679999998863211 124456788999998876555443
No 350
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.52 E-value=1.3e-14 Score=136.85 Aligned_cols=103 Identities=24% Similarity=0.416 Sum_probs=84.0
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCC--------
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPV-------- 624 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~-------- 624 (691)
..+.+.+||+.++|+++||+|.+|||||||+|.|+|..+|++|+|++||.++.-=+...--++|-+|+|||.
T Consensus 26 ~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 26 VEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred hhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhh
Confidence 357899999999999999999999999999999999999999999999999877776666678999999984
Q ss_pred ---cccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcH
Q 005561 625 ---LFSVSVGENIAYGLPDENVSKDDIIKAAKAANAH 658 (691)
Q Consensus 625 ---LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~ 658 (691)
+.++-++-|=.+- ++...++|.+-++.+|+.
T Consensus 106 iGqiLd~PL~l~T~~~---~~~R~~~i~~TL~~VGL~ 139 (267)
T COG4167 106 IGQILDFPLRLNTDLE---PEQRRKQIFETLRMVGLL 139 (267)
T ss_pred hhhHhcchhhhcccCC---hHHHHHHHHHHHHHhccC
Confidence 2233333333322 234678899999999983
No 351
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.52 E-value=1.3e-14 Score=143.09 Aligned_cols=132 Identities=23% Similarity=0.366 Sum_probs=108.1
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.+++++|+-+|. +..+++||||++++|+..+++|++|+||||.+++|+||.+|++|+|.++|.+++. ..++.|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRI 74 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhc
Confidence 378999999996 4579999999999999999999999999999999999999999999999998764 447789
Q ss_pred EEEeccCCccc-ccHHHHHhcCCCCCCCCHHHH----HHHHHHcCc----HHHHhcCCcccccchhhH
Q 005561 617 SIVNQEPVLFS-VSVGENIAYGLPDENVSKDDI----IKAAKAANA----HDFIISLPQVWLSKSHFV 675 (691)
Q Consensus 617 a~V~Qd~~LF~-gTIreNI~lG~p~~~~sdeeI----~~Al~~A~l----~dfI~~LP~GydT~~~~~ 675 (691)
||.|-|--|+. -||.|-|.|-..-...+.+|+ ..-++..++ .+-|++|..|-+-.+||+
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfi 142 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFI 142 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHH
Confidence 99999999995 699999987321111334443 334444444 567899999999999985
No 352
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=4.3e-14 Score=164.67 Aligned_cols=120 Identities=25% Similarity=0.276 Sum_probs=94.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|+++||+++|+ +..+|+|+||+|++|+++||+|++|||||||+++|+|+++|++|+|.+++. ..|
T Consensus 312 ~l~~~~l~~~y~---~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYG---DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeC---CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 499999999996 246999999999999999999999999999999999999999999999752 269
Q ss_pred EEEeccC--Ccc-cccHHHHHhcCCCCCCCCHHHHHHHHHHcCcH-H----HHhcCCcccccch
Q 005561 617 SIVNQEP--VLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAH-D----FIISLPQVWLSKS 672 (691)
Q Consensus 617 a~V~Qd~--~LF-~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~-d----fI~~LP~GydT~~ 672 (691)
+|++|+. .++ +.|+.+|+.-..+. ..++++.++++..++. + .+..|..|-...+
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl 439 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQ--ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARL 439 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCch--hhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHH
Confidence 9999985 344 34899988532222 3467788889888884 3 3455555544433
No 353
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.51 E-value=1.3e-14 Score=136.60 Aligned_cols=126 Identities=27% Similarity=0.418 Sum_probs=102.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC---------
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF--------- 607 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i--------- 607 (691)
.++.+|+.-+|. +..||+++||+.++|+.+.|+|.|||||||+++++.=+-.|+.|+|.++|.+|+--
T Consensus 6 ~l~v~dlHK~~G---~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcc---cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 589999999996 34699999999999999999999999999999999999999999999999887522
Q ss_pred -C---hHHhhhceEEEeccCCccc-ccHHHHHh------cCCCCCCCCHHHHHHHHHHcCcHHHHhcCCc
Q 005561 608 -D---KSEWARVVSIVNQEPVLFS-VSVGENIA------YGLPDENVSKDDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 608 -~---~~~lR~~Ia~V~Qd~~LF~-gTIreNI~------lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~ 666 (691)
+ .+.+|.+.++|+|.-.|++ -||.||+. +|.+.++ --|.-++.+.++|+.|--+.-|.
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~e-a~e~Ae~~L~kVGi~ek~~~YP~ 151 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAE-AIERAEKYLAKVGIAEKADAYPA 151 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHH-HHHHHHHHHHHhCchhhhhcCcc
Confidence 2 4467889999999999995 69999985 4433211 12334556778999887776664
No 354
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.50 E-value=2.5e-14 Score=153.39 Aligned_cols=94 Identities=35% Similarity=0.594 Sum_probs=77.6
Q ss_pred EECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccc-cHHHHHhcCCCCCCCC----H
Q 005561 571 LVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV-SVGENIAYGLPDENVS----K 645 (691)
Q Consensus 571 IVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~g-TIreNI~lG~p~~~~s----d 645 (691)
|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|+||+|++.+|.. |++|||.++......+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987664 47889999999999965 9999999863211112 3
Q ss_pred HHHHHHHHHcCcHHHHhcCCc
Q 005561 646 DDIIKAAKAANAHDFIISLPQ 666 (691)
Q Consensus 646 eeI~~Al~~A~l~dfI~~LP~ 666 (691)
+++.++++..++.++..+.|.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~ 99 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPH 99 (325)
T ss_pred HHHHHHHHHcCCcchhcCChh
Confidence 567889999999887766554
No 355
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.50 E-value=4.3e-14 Score=130.83 Aligned_cols=128 Identities=24% Similarity=0.347 Sum_probs=103.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCcc--CCCCC----hH
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED--LRTFD----KS 610 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~d--i~~i~----~~ 610 (691)
+|+++|++|.|.. ..+|.||+|+-+.||++.+.||||+|||||++.|.=+--|.+|+..|.|.. .++.. ..
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4899999999963 468999999999999999999999999999999999999999999998863 33332 45
Q ss_pred HhhhceEEEeccCCccc-ccHHHHHh------cCCCCCCCCHHHHHHHHHHcCcHHHHhcCCccc
Q 005561 611 EWARVVSIVNQEPVLFS-VSVGENIA------YGLPDENVSKDDIIKAAKAANAHDFIISLPQVW 668 (691)
Q Consensus 611 ~lR~~Ia~V~Qd~~LF~-gTIreNI~------lG~p~~~~sdeeI~~Al~~A~l~dfI~~LP~Gy 668 (691)
++|+.+|+|.|+-+|+. -||-||+. .|.+++ --..+-.+.++...+.+|.++.|--+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~-qa~~~a~ellkrlrl~~~adr~plhl 142 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKD-QALARAEKLLKRLRLKPYADRYPLHL 142 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHH-HHHHHHHHHHHHhccccccccCceec
Confidence 89999999999999995 69999995 333221 12234566777888888888887543
No 356
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=7.9e-14 Score=162.44 Aligned_cols=83 Identities=29% Similarity=0.402 Sum_probs=70.4
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+++|++ ..+|+|+||+|++|+++||||++|||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999963 469999999999999999999999999999999999999999999999852 377
Q ss_pred EEeccCCcccccHHHHH
Q 005561 618 IVNQEPVLFSVSVGENI 634 (691)
Q Consensus 618 ~V~Qd~~LF~gTIreNI 634 (691)
|++|++..+..|+.+++
T Consensus 68 ~~~q~~~~~~~~~~~~v 84 (638)
T PRK10636 68 WVNQETPALPQPALEYV 84 (638)
T ss_pred EEecCCCCCCCCHHHHH
Confidence 78776554545554443
No 357
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.48 E-value=4.9e-14 Score=134.63 Aligned_cols=122 Identities=23% Similarity=0.369 Sum_probs=102.8
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECC-ccCCCCChHHh-hh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG-EDLRTFDKSEW-AR 614 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG-~di~~i~~~~l-R~ 614 (691)
-++++||+.+++ +-.+|+|+||+|.+||.=+|+||+|+||||++..|.|--+|++|+++++| .|+..++.... |.
T Consensus 5 iL~~~~vsVsF~---GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFG---GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEc---ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 378999999996 35689999999999999999999999999999999999999999999999 99999997765 56
Q ss_pred ceEEEeccCCcccc-cHHHHHhcCCCC------------CCCCHHHHHHHHHHcCcHHHH
Q 005561 615 VVSIVNQEPVLFSV-SVGENIAYGLPD------------ENVSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~g-TIreNI~lG~p~------------~~~sdeeI~~Al~~A~l~dfI 661 (691)
-||==+|.|.+|.. ||+||+.++... .....++|.+++...++.|--
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~ 141 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER 141 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhh
Confidence 79999999999965 999999765211 112334688888888876643
No 358
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.48 E-value=1.9e-13 Score=143.26 Aligned_cols=129 Identities=29% Similarity=0.491 Sum_probs=102.7
Q ss_pred cEEEEeeEEECCCCCC--------cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC
Q 005561 537 DICLEDVYFSYPLRPD--------VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD 608 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~--------~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~ 608 (691)
-++.+||...||-+.. -.+.+++||+.++||+++|||+|||||||+...|+|+.+++ |+|.++|+++..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 4889999888874321 24789999999999999999999999999999999999977 99999999999999
Q ss_pred hHH---hhhceEEEeccCCc-c--cccHHHHHhcCC----CC--CCCCHHHHHHHHHHcCcHHHHh-cCCc
Q 005561 609 KSE---WARVVSIVNQEPVL-F--SVSVGENIAYGL----PD--ENVSKDDIIKAAKAANAHDFII-SLPQ 666 (691)
Q Consensus 609 ~~~---lR~~Ia~V~Qd~~L-F--~gTIreNI~lG~----p~--~~~sdeeI~~Al~~A~l~dfI~-~LP~ 666 (691)
.++ +|+.+-+|+||||= + .-||.+-|.=|. |. +.-.++.+.+|++.+|++.-.. +.|+
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh 425 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH 425 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc
Confidence 765 68999999999983 2 247777665442 21 1124677999999999976543 3444
No 359
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.48 E-value=5.5e-14 Score=137.16 Aligned_cols=68 Identities=28% Similarity=0.285 Sum_probs=61.6
Q ss_pred EeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEe
Q 005561 541 EDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVN 620 (691)
Q Consensus 541 ~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~ 620 (691)
+||+++|. +..+++| +|+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.+ ++|++
T Consensus 4 ~~l~~~~~---~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYG---VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEEC---CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 58899995 3468888 49999999999999999999999999999999999999999963 89999
Q ss_pred ccCC
Q 005561 621 QEPV 624 (691)
Q Consensus 621 Qd~~ 624 (691)
|++.
T Consensus 68 q~~~ 71 (177)
T cd03222 68 QYID 71 (177)
T ss_pred ccCC
Confidence 9876
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=99.47 E-value=2.4e-14 Score=164.62 Aligned_cols=115 Identities=23% Similarity=0.312 Sum_probs=90.7
Q ss_pred EeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEE-----------ECCccCCCCCh
Q 005561 541 EDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRIT-----------VGGEDLRTFDK 609 (691)
Q Consensus 541 ~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~-----------IdG~di~~i~~ 609 (691)
++++++|.. +..+|++++ ++++||.+||||++|||||||+|+|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 348999962 346899999 9999999999999999999999999999999999998 99998875532
Q ss_pred HH--hhh----ceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHHhc
Q 005561 610 SE--WAR----VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 610 ~~--lR~----~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
+- .+. .+.+++|.|.+|.+|++||+... + ..+++.++++..++.+...+
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~--~---~~~~~~~~l~~l~l~~~~~~ 208 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV--D---ERGKLDEVVERLGLENILDR 208 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh--h---HHHHHHHHHHHcCCchhhcC
Confidence 11 112 24566667788899999999853 1 34678889999988665443
No 361
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.45 E-value=3e-13 Score=156.00 Aligned_cols=120 Identities=23% Similarity=0.412 Sum_probs=98.2
Q ss_pred CcEEEEeeEEECCCCC--CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC---CCCeEEECCccCCCCChH
Q 005561 536 GDICLEDVYFSYPLRP--DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP---TGGRITVGGEDLRTFDKS 610 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~--~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p---~~G~I~IdG~di~~i~~~ 610 (691)
-.++|+|++..-++.. .+.+|+|||.+++|||..||.||||||||||++.|+|.-+. .+|+|++||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 3689999999887532 46799999999999999999999999999999999999975 7999999994 56788
Q ss_pred HhhhceEEEeccCCccc-ccHHHHHhcCC----CCC---CCCHHHHHHHHHHcCcH
Q 005561 611 EWARVVSIVNQEPVLFS-VSVGENIAYGL----PDE---NVSKDDIIKAAKAANAH 658 (691)
Q Consensus 611 ~lR~~Ia~V~Qd~~LF~-gTIreNI~lG~----p~~---~~sdeeI~~Al~~A~l~ 658 (691)
.+|+..|||+||..++. -||+|++.|.. |.. +..++.|.+..+.-++.
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~ 156 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE 156 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh
Confidence 99999999999999995 59999998742 221 12234566666666665
No 362
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.44 E-value=7.4e-14 Score=174.63 Aligned_cols=85 Identities=25% Similarity=0.377 Sum_probs=75.7
Q ss_pred CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcC----CCCCCeEEECCccCCCCChHHhhhceEEEeccCCccc
Q 005561 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY----EPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS 627 (691)
Q Consensus 552 ~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly----~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~ 627 (691)
.+.+|+|+|+++++||.+||+|+||||||||+|+|+|.. .|.+|+|.+||.++.+.. ..+|+.++||+|+..+|.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCC
Confidence 356999999999999999999999999999999999986 579999999999886654 356788999999988886
Q ss_pred -ccHHHHHhcC
Q 005561 628 -VSVGENIAYG 637 (691)
Q Consensus 628 -gTIreNI~lG 637 (691)
-||+|||.|+
T Consensus 152 ~lTV~E~l~f~ 162 (1394)
T TIGR00956 152 HLTVGETLDFA 162 (1394)
T ss_pred CCCHHHHHHHH
Confidence 5999999875
No 363
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.44 E-value=2.7e-13 Score=158.27 Aligned_cols=83 Identities=25% Similarity=0.400 Sum_probs=68.0
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
|+++||+++|++ .++|+|+||+|++|+++||||++|||||||+++|+|+++|++|+|.++|.. .++
T Consensus 4 l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 889999999963 469999999999999999999999999999999999999999999998741 256
Q ss_pred EEeccCCc-ccccHHHHH
Q 005561 618 IVNQEPVL-FSVSVGENI 634 (691)
Q Consensus 618 ~V~Qd~~L-F~gTIreNI 634 (691)
+++|++.. ..+++.+++
T Consensus 70 ~l~q~~~~~~~~~v~~~~ 87 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFV 87 (635)
T ss_pred EeccCCCCCCCCCHHHHH
Confidence 66665432 124455443
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.43 E-value=3.8e-13 Score=151.32 Aligned_cols=88 Identities=36% Similarity=0.518 Sum_probs=80.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
.|+++|++++|+ ++++++|+||++.+|+++||||++|||||||+|+|+|..+|++|+|..++. -.|
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 489999999995 457999999999999999999999999999999999999999999999874 249
Q ss_pred EEEeccCCcccc-cHHHHHhcCC
Q 005561 617 SIVNQEPVLFSV-SVGENIAYGL 638 (691)
Q Consensus 617 a~V~Qd~~LF~g-TIreNI~lG~ 638 (691)
+|++|++.+.++ ||+|.+..|.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~ 91 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGF 91 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhh
Confidence 999999999965 9999998764
No 365
>PLN03140 ABC transporter G family member; Provisional
Probab=99.41 E-value=1.7e-13 Score=170.99 Aligned_cols=82 Identities=27% Similarity=0.436 Sum_probs=74.8
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC---CCeEEECCccCCCCChHHhhhceEEEeccCCccc-c
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS-V 628 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~---~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~-g 628 (691)
..+|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+.. .|+.++||+|+..+|. -
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 46999999999999999999999999999999999999998 999999999887654 3788999999987775 6
Q ss_pred cHHHHHhcC
Q 005561 629 SVGENIAYG 637 (691)
Q Consensus 629 TIreNI~lG 637 (691)
||+|||.|+
T Consensus 255 TV~EtL~f~ 263 (1470)
T PLN03140 255 TVKETLDFS 263 (1470)
T ss_pred cHHHHHHHH
Confidence 999999874
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.33 E-value=4.6e-12 Score=142.65 Aligned_cols=123 Identities=24% Similarity=0.309 Sum_probs=100.3
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-++++|++|+|++ ++++++|+||.|.+|+++|||||+|+|||||+|+|+|-..|.+|.|.++-. -+|
T Consensus 321 vl~~~~~~~~y~~--~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~i 387 (530)
T COG0488 321 VLEFENVSKGYDG--GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKI 387 (530)
T ss_pred eEEEeccccccCC--CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEE
Confidence 5999999999973 367999999999999999999999999999999999999999999998653 259
Q ss_pred EEEeccC-Ccc-cccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHH-----HHhcCCcccccchhh
Q 005561 617 SIVNQEP-VLF-SVSVGENIAYGLPDENVSKDDIIKAAKAANAHD-----FIISLPQVWLSKSHF 674 (691)
Q Consensus 617 a~V~Qd~-~LF-~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~d-----fI~~LP~GydT~~~~ 674 (691)
||.+|+. .++ +.|+.|++.-+.|+ ..+.++...+...++.. -|..|..|=...+.|
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~~--~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~L 450 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFPD--GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLL 450 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCcc--ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHH
Confidence 9999998 444 34899999877654 34889999999888743 344566665555444
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.31 E-value=1.7e-12 Score=152.30 Aligned_cols=96 Identities=22% Similarity=0.188 Sum_probs=74.7
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcC---CCCCCeEEECCccCCCCC--h-
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY---EPTGGRITVGGEDLRTFD--K- 609 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly---~p~~G~I~IdG~di~~i~--~- 609 (691)
..|+++|++|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|.. .|.+|+|.+.++++..-+ .
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 35999999999962 45999999999999999999999999999999999864 588999987665432111 1
Q ss_pred -----------HHhhhceEEEeccCCcccccHHHHH
Q 005561 610 -----------SEWARVVSIVNQEPVLFSVSVGENI 634 (691)
Q Consensus 610 -----------~~lR~~Ia~V~Qd~~LF~gTIreNI 634 (691)
..+++.+++++|++.+...+..+|.
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~ 288 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKG 288 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 1235668999998876544555554
No 368
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.29 E-value=6.3e-12 Score=132.00 Aligned_cols=130 Identities=18% Similarity=0.313 Sum_probs=100.5
Q ss_pred cEEEEeeEEECCC-CCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-----CCCeEEECCccCCCCChH
Q 005561 537 DICLEDVYFSYPL-RPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-----TGGRITVGGEDLRTFDKS 610 (691)
Q Consensus 537 ~I~f~nVsF~Y~~-~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-----~~G~I~IdG~di~~i~~~ 610 (691)
-++++|++.+|.. +....+++||||+|++||++|+||+||||||--++.++|+++- -+|+|++||.|+-..+.+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 3788888877742 2345799999999999999999999999999999999999874 478999999999999999
Q ss_pred Hhhh----ceEEEeccCCcc-c------ccHHHHHhcCCC-CCCCCHHHHHHHHHHcCcHH---HHhcCCc
Q 005561 611 EWAR----VVSIVNQEPVLF-S------VSVGENIAYGLP-DENVSKDDIIKAAKAANAHD---FIISLPQ 666 (691)
Q Consensus 611 ~lR~----~Ia~V~Qd~~LF-~------gTIreNI~lG~p-~~~~sdeeI~~Al~~A~l~d---fI~~LP~ 666 (691)
.+|+ .|++|+|||.-= | .-|.|-|.+-+. ...+-.+++.+.++.+|+.| .+.+.|+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPH 156 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPH 156 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCc
Confidence 8886 899999999631 2 234555554321 11234678889999999854 4444454
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.27 E-value=3.1e-12 Score=119.70 Aligned_cols=86 Identities=29% Similarity=0.410 Sum_probs=67.2
Q ss_pred EEEEeeEEECC----CCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCc----cCCCCCh
Q 005561 538 ICLEDVYFSYP----LRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE----DLRTFDK 609 (691)
Q Consensus 538 I~f~nVsF~Y~----~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~----di~~i~~ 609 (691)
+..+||+.++. ++-.-||++|+||++++||++++-|+||||||||++.|-+-|.|++|+|++.-. |+....+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 66777755542 112247999999999999999999999999999999999999999999998543 4444443
Q ss_pred H---H-hhhceEEEeccC
Q 005561 610 S---E-WARVVSIVNQEP 623 (691)
Q Consensus 610 ~---~-lR~~Ia~V~Qd~ 623 (691)
. + -|+.||||+|--
T Consensus 85 r~vl~vRr~TiGyVSQFL 102 (235)
T COG4778 85 REVLEVRRTTIGYVSQFL 102 (235)
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 3 2 355799999943
No 370
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=5e-12 Score=118.66 Aligned_cols=85 Identities=25% Similarity=0.345 Sum_probs=71.9
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECC-----ccCCCCChHH
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG-----EDLRTFDKSE 611 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG-----~di~~i~~~~ 611 (691)
-+++++++-.|.. ..-.+|+||++.|||..+|||+||||||||+++|.+-..|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~---~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGP---GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCC---CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 4788999999963 2468999999999999999999999999999999999999999999976 4555555444
Q ss_pred ----hhhceEEEeccCC
Q 005561 612 ----WARVVSIVNQEPV 624 (691)
Q Consensus 612 ----lR~~Ia~V~Qd~~ 624 (691)
+|..-|+|.|+|-
T Consensus 83 RR~L~RTeWG~VhQnP~ 99 (258)
T COG4107 83 RRRLLRTEWGFVHQNPR 99 (258)
T ss_pred HHHHhhhccceeecCcc
Confidence 3456799999984
No 371
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.22 E-value=1.6e-11 Score=119.69 Aligned_cols=61 Identities=23% Similarity=0.291 Sum_probs=51.3
Q ss_pred CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEec
Q 005561 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQ 621 (691)
Q Consensus 552 ~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Q 621 (691)
..++|+|+||+|++|+++||+||||||||||+++++ +++|+|.++|.. ... .|+.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH
Confidence 457899999999999999999999999999999996 369999999862 221 2456899998
No 372
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.18 E-value=3.8e-11 Score=144.56 Aligned_cols=125 Identities=22% Similarity=0.363 Sum_probs=104.7
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC-ChHHhhh
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF-DKSEWAR 614 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i-~~~~lR~ 614 (691)
-.+..+|++..|+.+. . +.+++|+.|++||..++-|++||||||.+|+|.|...|++|++.++|.++..- +.+..|+
T Consensus 563 ~~~~~~~L~k~y~~~~-~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD-G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchh-h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 3589999999998532 2 89999999999999999999999999999999999999999999999999865 4556999
Q ss_pred ceEEEeccCCcccc-cHHHHHhc-----CCCCCCCCHHHHHHHHHHcCcHHHHhc
Q 005561 615 VVSIVNQEPVLFSV-SVGENIAY-----GLPDENVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~g-TIreNI~l-----G~p~~~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
+|||+||+.-|+.. |.||.+.+ |-|..++ ++.+.+.|+..++.+....
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di-~~~v~~ll~~~~L~~~~~~ 694 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDI-GSAIEKLLRLVGLGPYANK 694 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHH-HHHHHHHHHHcCChhhhcc
Confidence 99999999999975 99999965 2232222 2447888888888776654
No 373
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.16 E-value=1.9e-11 Score=122.78 Aligned_cols=66 Identities=27% Similarity=0.586 Sum_probs=57.0
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEe
Q 005561 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVN 620 (691)
Q Consensus 554 ~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~ 620 (691)
++.+||||+||+|+.++++|++|+||||.+|+|.|+..|++|.|.++|.+-.+ +.+++-+++++|.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~ 103 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVM 103 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999997665 3444445555553
No 374
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=1.4e-10 Score=137.73 Aligned_cols=130 Identities=27% Similarity=0.414 Sum_probs=95.4
Q ss_pred EEEEeeEEECCC-CCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC--CCCCeEEECCccCCCCChHHhhh
Q 005561 538 ICLEDVYFSYPL-RPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE--PTGGRITVGGEDLRTFDKSEWAR 614 (691)
Q Consensus 538 I~f~nVsF~Y~~-~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~--p~~G~I~IdG~di~~i~~~~lR~ 614 (691)
...+|+.|.-+. +....+|+||+=-++||..+||+|+||||||||++.|+|--. ..+|+|+|||.+..+ +..+|
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R 864 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFAR 864 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhcc
Confidence 344555553321 234579999999999999999999999999999999998644 257999999998765 78999
Q ss_pred ceEEEeccC-CcccccHHHHHhcC----CCCCCCCHHH----HHHHHHHcCc---HHHHhcCCc-ccccc
Q 005561 615 VVSIVNQEP-VLFSVSVGENIAYG----LPDENVSKDD----IIKAAKAANA---HDFIISLPQ-VWLSK 671 (691)
Q Consensus 615 ~Ia~V~Qd~-~LF~gTIreNI~lG----~p~~~~sdee----I~~Al~~A~l---~dfI~~LP~-GydT~ 671 (691)
.+|||.|+. |+=.-||||-+.|. .|. +++++| |.++.+..++ .|.|-.+|. |++|+
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~-~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~e 933 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPK-EVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTE 933 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCC-cCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHH
Confidence 999998755 67778999999875 232 344433 4555555555 466666653 55554
No 375
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.10 E-value=4.8e-11 Score=130.20 Aligned_cols=67 Identities=25% Similarity=0.217 Sum_probs=57.3
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCC-eEEECCccCCCCChHHhhhceEEEeccC
Q 005561 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG-RITVGGEDLRTFDKSEWARVVSIVNQEP 623 (691)
Q Consensus 554 ~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G-~I~IdG~di~~i~~~~lR~~Ia~V~Qd~ 623 (691)
.+|++||++|++||.++|+||||||||||++ .++.+|++| +|.+||.++...+..+++..- +|.|+-
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 5899999999999999999999999999999 788888888 799999999887765443322 787763
No 376
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.08 E-value=1.1e-10 Score=109.85 Aligned_cols=114 Identities=28% Similarity=0.375 Sum_probs=98.4
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceE
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVS 617 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia 617 (691)
+.++||+-+- -|-.+|.++.+||..=+|||+|||||||+.-++|+.. -+|+|.++|.|+..++..++.++-+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHH
Confidence 5677776432 2677899999999999999999999999999999985 7899999999999999999999999
Q ss_pred EEeccC-CcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHH
Q 005561 618 IVNQEP-VLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDF 660 (691)
Q Consensus 618 ~V~Qd~-~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~df 660 (691)
|..|+. -.|.--|..-+++-.|+ ..--++|.++|++.+++|-
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~-~~~a~~i~~i~~~L~l~DK 118 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPD-KTRTELLNDVAGALALDDK 118 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCch-HHHHHHHHHHHhhhcccch
Confidence 988764 58888999999999886 3455788899999998774
No 377
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.03 E-value=3.1e-06 Score=92.38 Aligned_cols=266 Identities=9% Similarity=0.042 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 005561 191 TLSMPIFSGRFFEVLIG-------ARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAE 263 (691)
Q Consensus 191 ~l~~P~~~~~iiD~l~~-------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~ 263 (691)
.+......+.+.|.+.. .+.+.++..+...+.+.++...+..+..+...++..+...-|-..+.++-++..
T Consensus 108 ~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~Wl~~r-- 185 (409)
T PRK11098 108 SVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHWQKLR-- 185 (409)
T ss_pred hhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 33444445677787754 133444444433333333322233333333333333333344444444444332
Q ss_pred hhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHH
Q 005561 264 FFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQL-------------APILGVLVLTVS 330 (691)
Q Consensus 264 ~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L-------------~lil~~~~~~~~ 330 (691)
+...--+|++.|+....+...+... ..+.++..++..+.+++.++..+ ..++++..++..
T Consensus 186 -----~ienPDQRIqEDi~~F~~~tl~L~~--~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT 258 (409)
T PRK11098 186 -----HIEGAAQRVQEDTMRFASTLENLGV--SFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGT 258 (409)
T ss_pred -----CCCCccHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHH
Confidence 1122467888998777665544332 34566666777777788777653 111222222333
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 331 VLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKR-QMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIA 409 (691)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~-~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~~~~ 409 (691)
.+..+..++..++.-++++.+++....+.-.=++.+ +.|.. ..++|.+..+.+.+.-.+...+.... ..-
T Consensus 259 ~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE-----~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~----~~y 329 (409)
T PRK11098 259 GLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD-----RATPPTVRELFSNVRKNYFRLYFHYMYFNIAR----ILY 329 (409)
T ss_pred HHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 334455666555555555555544332221111111 22222 22334433333333322222222222 222
Q ss_pred HHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005561 410 IYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILS 474 (691)
Q Consensus 410 ~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~ 474 (691)
..+..+.-+.+.+....+|++|.|.+........++..+++.+.+.+.++.+-.+..+|+.++.+
T Consensus 330 ~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~ 394 (409)
T PRK11098 330 LQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEA 394 (409)
T ss_pred HHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333344566778999999999999999999999999999999999999999999998864
No 378
>PRK12369 putative transporter; Reviewed
Probab=99.01 E-value=4.8e-06 Score=89.04 Aligned_cols=268 Identities=10% Similarity=0.103 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 005561 188 TTCTLSMPIFSGRFFEVLIGA-------RPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQ 260 (691)
Q Consensus 188 ~~~~l~~P~~~~~iiD~l~~~-------~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~l 260 (691)
+...+......+.+.|.+... +.+.++..+...+++.++...+.....+....+..+...-|-.++.++-+..
T Consensus 30 v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~wl~~ 109 (326)
T PRK12369 30 VSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNK 109 (326)
T ss_pred HHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444555567788887642 2334454443333333332233333333333333344444444555555442
Q ss_pred ChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHH------------HHHHHHHH
Q 005561 261 KAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP------------ILGVLVLT 328 (691)
Q Consensus 261 p~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~l------------il~~~~~~ 328 (691)
+ ...-.-=+|++.|++..-+...+... ..+.+++.++....+++.++..+.+ .+.+..++
T Consensus 110 ~------~~iDNPDQRI~EDi~~f~~~tl~l~~--~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiyai~ 181 (326)
T PRK12369 110 R------DNIEGSSQRIQEDTYRFAKIMESLGL--SFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLG 181 (326)
T ss_pred C------CCCCCccHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHHHH
Confidence 2 11112237899999877766554433 3456666677777777777754432 11222222
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHchHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 329 VSVLVAVYKRSTVPVFKAHGLAQASIADCV---TETFSAIRTVRSFGGE-KRQMLMFGRQVLAYQQSGIKLGTFKSLNES 404 (691)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~E~l~gi~tIKa~~~E-~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 404 (691)
...+..+..++..++..++.+.++++...+ .|.-+. + .| +...++|.+..+.+.+.-.+...+..+...
T Consensus 182 gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~------~-~E~~~l~~~f~~v~~n~~~~~~~~~~l~~~~~~ 254 (326)
T PRK12369 182 GLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN------Y-AKPETLIELFTGLRFNYFRLFLHYGYFNIWLIS 254 (326)
T ss_pred HHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh------h-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333444556666555555555555443211 111111 1 22 222334444333333332222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005561 405 LTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILS 474 (691)
Q Consensus 405 l~~~~~~~~~~~il~~G~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~ 474 (691)
. ..+..++-+.+.+.....|+++.|.+........++..+++.+.+.+.++.+-.+..+|+.++.+
T Consensus 255 y----~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~ 320 (326)
T PRK12369 255 F----SQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEK 320 (326)
T ss_pred H----HHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22333333334566677999999999999999999999999999999999999999999998754
No 379
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.00 E-value=2.4e-06 Score=90.02 Aligned_cols=219 Identities=12% Similarity=0.149 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Q 005561 184 LIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAE 263 (691)
Q Consensus 184 ~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~~lf~~ll~lp~~ 263 (691)
.++.+.+++......+.++|.+...+...++..+...+++.+...++.....+....+..+....+-..+.++.++-. .
T Consensus 36 ~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~-~ 114 (281)
T PF06472_consen 36 LLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHDRYLSNR-T 114 (281)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-h
Confidence 333444555666677888898887776666665554444444444444444444444444555556666666666666 5
Q ss_pred hhccc-C---hhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHh
Q 005561 264 FFDRY-K---VGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPI-LGVLVLTVSVLVAVYKR 338 (691)
Q Consensus 264 ~f~~~-~---~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~li-l~~~~~~~~~~~~~~~~ 338 (691)
||.-. . .-+-=+|++.|++..-+...+... ..+..++.++.....++.++..+++. +.+..+....+..+..+
T Consensus 115 yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~--~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~ 192 (281)
T PF06472_consen 115 YYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFL--GLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLITHWIGP 192 (281)
T ss_pred hHhhhccccccccHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 55522 2 335667999999988877665554 35566666777777777777776653 33334444455556666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 339 STVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKSLNESL 405 (691)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIKa~~~E~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l 405 (691)
...++..+..+.++++........++.+.|-.++.|+.|.++.++..++..+...+..........+
T Consensus 193 ~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~ 259 (281)
T PF06472_consen 193 PLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFF 259 (281)
T ss_pred hhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777777778778888899999999999999999999888887766655554444433333
No 380
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.94 E-value=2.3e-09 Score=115.41 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=61.2
Q ss_pred cCcEEEEeeEEECCCCCCccccc-----------ceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCC--CeEEECC
Q 005561 535 SGDICLEDVYFSYPLRPDVVILN-----------GLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG--GRITVGG 601 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~-----------~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~--G~I~IdG 601 (691)
.+.|+|+||+|.||+ ++.+|+ |+++.|.+||+++|||++|||||||+++|.+.+.... ..+.+--
T Consensus 128 ~~ri~Fe~LTf~YP~--er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlL 205 (415)
T TIGR00767 128 KNRVLFENLTPLYPN--ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLL 205 (415)
T ss_pred CCCeEEEEeeecCCC--ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEE
Confidence 578999999999984 347897 9999999999999999999999999999999987541 2333333
Q ss_pred ccCCCCChHHhhhce
Q 005561 602 EDLRTFDKSEWARVV 616 (691)
Q Consensus 602 ~di~~i~~~~lR~~I 616 (691)
++-+..+..++.+.+
T Consensus 206 IgER~~EVtDLqrsI 220 (415)
T TIGR00767 206 IDERPEEVTDMQRSV 220 (415)
T ss_pred cCCCCccHHHHHHHh
Confidence 322334555555554
No 381
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.92 E-value=7.7e-10 Score=110.20 Aligned_cols=101 Identities=18% Similarity=0.224 Sum_probs=73.0
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCC---------CCeEEECCccCCCCChHHhhhceEEEeccCCccc
Q 005561 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPT---------GGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS 627 (691)
Q Consensus 557 ~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~---------~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~ 627 (691)
+++++++++| .++|+|+||||||||++.|.++..|. .|++.++|.++... ..+++|+||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 99999999999999999999998665 34688888876542 3468899999999988
Q ss_pred ccHHHHHhcCCCCCCCCHHHHHHHHHHcCc-HHHHhcCCcccccchhh
Q 005561 628 VSVGENIAYGLPDENVSKDDIIKAAKAANA-HDFIISLPQVWLSKSHF 674 (691)
Q Consensus 628 gTIreNI~lG~p~~~~sdeeI~~Al~~A~l-~dfI~~LP~GydT~~~~ 674 (691)
|+.. ..+++.++++..+. +..+.+|..|-...+.+
T Consensus 89 --------~~~~----~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~l 124 (197)
T cd03278 89 --------YSII----SQGDVSEIIEAPGKKVQRLSLLSGGEKALTAL 124 (197)
T ss_pred --------eeEE----ehhhHHHHHhCCCccccchhhcCHHHHHHHHH
Confidence 3211 23566666666332 33455666665444443
No 382
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.91 E-value=7.4e-10 Score=110.86 Aligned_cols=79 Identities=32% Similarity=0.424 Sum_probs=67.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHhcCC------------CCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHH
Q 005561 564 KSGSVTALVGSSGAGKSTIVQLLARFYE------------PTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVG 631 (691)
Q Consensus 564 ~~Ge~vAIVG~SGSGKSTLl~LL~gly~------------p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIr 631 (691)
++|+.++|+|+||||||||+++|++.++ |..|+ +||.|+..++.+++++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 5899999999999999999999999986 88899 699999999999998854 588899999999
Q ss_pred HHHhcCCCCCCCCHHHHHHHHH
Q 005561 632 ENIAYGLPDENVSKDDIIKAAK 653 (691)
Q Consensus 632 eNI~lG~p~~~~sdeeI~~Al~ 653 (691)
+|. ||. +.+++.++++
T Consensus 78 ~~~-y~~-----~~~~i~~~l~ 93 (205)
T PRK00300 78 GNY-YGT-----PRSPVEEALA 93 (205)
T ss_pred Ccc-ccC-----cHHHHHHHHH
Confidence 984 663 4566666654
No 383
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.91 E-value=2.1e-09 Score=103.83 Aligned_cols=68 Identities=32% Similarity=0.459 Sum_probs=62.4
Q ss_pred cCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccC
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDL 604 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di 604 (691)
+..|++.++.|+|+. ..|++-|+|+++|+|.+.-+||.+|||||||+|+|.|-.-...|.|.+.|.+-
T Consensus 11 ~~aievsgl~f~y~~--~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrsa 78 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV--SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSA 78 (291)
T ss_pred cceEEEeccEEeccc--CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCc
Confidence 457999999999984 33899999999999999999999999999999999999998889999999864
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.88 E-value=2.8e-09 Score=116.20 Aligned_cols=127 Identities=24% Similarity=0.286 Sum_probs=98.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhce
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
-|.++||+|+|+++ ..+++++||-|..++++|+|||+|+|||||+||+.|...|+.|.|.-.-.. .+
T Consensus 389 vi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 59999999999843 479999999999999999999999999999999999999999998754432 23
Q ss_pred EEEe---ccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHH-----HhcCCcccccchhhHHH
Q 005561 617 SIVN---QEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDF-----IISLPQVWLSKSHFVLL 677 (691)
Q Consensus 617 a~V~---Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~df-----I~~LP~GydT~~~~~~~ 677 (691)
++-. ++.-..+-|.-||+.=--++ .-..|++...+...|+... +.+|.+|-...+-|..+
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~-~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l 523 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPD-EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARL 523 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccc-cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHH
Confidence 3333 34456788888988533233 2467889999999999743 45677787777766544
No 385
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.85 E-value=8.7e-06 Score=81.28 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=104.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 167 WSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEPLWKLLSKVGLLYALEPIFTVIFVMNMNTVWEKVM 246 (691)
Q Consensus 167 ~~~~~~~~~~~~~~ll~~l~~~~~~l~~P~~~~~iiD~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (691)
....|++++++.....+.+.-.++.+..|++.+..||.+.+++..... .++++.++..++...+...= .|+-
T Consensus 2 k~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~~~~----~~~~~~l~~~~igaaRR~~D----TRvf 73 (237)
T PF13748_consen 2 KAIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVWQAL----MYAALVLLMWAIGAARRIYD----TRVF 73 (237)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH----HHHHHHHHHHHHhhhhHHHh----hHHH
Confidence 346788999999999999999999999999999999999876532222 22222232222332222222 2333
Q ss_pred HHHHHHHHHHH-HcCChhhhcccChhHHHHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005561 247 SIVKAQIFRRV-LIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAPILGVL 325 (691)
Q Consensus 247 ~~LR~~lf~~l-l~lp~~~f~~~~~G~l~srlt~Dv~~i~~~~~~~i~~~~~~~~i~~~i~~li~l~~is~~L~lil~~~ 325 (691)
.+++.++-..+ +++ .-++.+.+.+..|++ =..++-|++.+.++. .+.+++.+++++++++.++.++++..+.+
T Consensus 74 ~rIy~~la~~vi~~q---r~~~~~~S~i~ARv~-lsRE~VdFfE~~lP~--lits~vsivga~vmLl~~e~~~g~~~l~~ 147 (237)
T PF13748_consen 74 SRIYAELAVPVILSQ---RQQGLSVSTIAARVA-LSREFVDFFEQHLPT--LITSVVSIVGAAVMLLVFEFWLGLACLLI 147 (237)
T ss_pred HHHHHHHhHHHHHHH---HHhCCChhHHHHHHH-HHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444331 111 235567888999984 355667788877763 67788889999999999999998765555
Q ss_pred HHHHHHHHHHHHhhhh
Q 005561 326 VLTVSVLVAVYKRSTV 341 (691)
Q Consensus 326 ~~~~~~~~~~~~~~~~ 341 (691)
+..+..+...|.++..
T Consensus 148 l~~~~~i~~~f~~~~~ 163 (237)
T PF13748_consen 148 LALFLLILPRFARRNY 163 (237)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5445455545555443
No 386
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.82 E-value=1.5e-10 Score=134.73 Aligned_cols=121 Identities=15% Similarity=0.075 Sum_probs=85.7
Q ss_pred HHHHHHHHHHchHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005561 353 SIADCVTETFSAIRTVRSFGGEKRQMLMF-----GRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKA 427 (691)
Q Consensus 353 ~~~~~~~E~l~gi~tIKa~~~E~~~~~~~-----~~~~~~~~~~~~k~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~ 427 (691)
...+.+.|.+.++.+||..+.|......| .....+..+...+..........+...+......+++++|+++++.
T Consensus 41 ~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~ 120 (644)
T PRK10733 41 VNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFM 120 (644)
T ss_pred HHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788999999999999988766666 5555555555555444333333333344445566778899999999
Q ss_pred CCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005561 428 GELSVG---IVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILS 474 (691)
Q Consensus 428 g~ltvG---~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~il~ 474 (691)
|.++.| .+++|..+...+..| ..+...+.++.....+.+|+.++.+
T Consensus 121 g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~ 169 (644)
T PRK10733 121 RQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVE 169 (644)
T ss_pred hhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHH
Confidence 999998 788887777777777 6667777788777777888877654
No 387
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.80 E-value=3.3e-08 Score=107.38 Aligned_cols=101 Identities=22% Similarity=0.470 Sum_probs=88.1
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccC-CCCChHHhhh-
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDL-RTFDKSEWAR- 614 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di-~~i~~~~lR~- 614 (691)
-++++|++..-. .+.+.++||||++++||.++|.|-+|-|-+-|+.+|+|+..|.+|+|+++|+|+ ...+...+|+
T Consensus 257 vL~V~~L~v~~~--~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDR--RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecC--CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 489999997543 235679999999999999999999999999999999999999999999999997 6778887766
Q ss_pred ceEEEeccC----CcccccHHHHHhcCCC
Q 005561 615 VVSIVNQEP----VLFSVSVGENIAYGLP 639 (691)
Q Consensus 615 ~Ia~V~Qd~----~LF~gTIreNI~lG~p 639 (691)
.++|||.|- -..+-|+.||+.++.-
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~ 363 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRH 363 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhc
Confidence 599999887 4678899999988753
No 388
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.79 E-value=1.6e-08 Score=111.17 Aligned_cols=85 Identities=22% Similarity=0.295 Sum_probs=71.7
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEEC---CccCCCCChHHh
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVG---GEDLRTFDKSEW 612 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~Id---G~di~~i~~~~l 612 (691)
+.++.++++..|.. +..+++.++ +|.+||+++|+|+||||||||++.|+|+.+|+.|.|.+. |.++.++..+.+
T Consensus 138 ~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 138 PAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 46899999999974 356899986 999999999999999999999999999999999999885 567666654433
Q ss_pred ----hhceEEEeccC
Q 005561 613 ----ARVVSIVNQEP 623 (691)
Q Consensus 613 ----R~~Ia~V~Qd~ 623 (691)
++.|++|.|..
T Consensus 215 ~~~r~rtI~vV~qsd 229 (450)
T PRK06002 215 ADNLKKAVAVVATSD 229 (450)
T ss_pred HHhhCCeEEEEEcCC
Confidence 35799999964
No 389
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.75 E-value=4.3e-09 Score=106.20 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=78.1
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEe-CCCEEEEECCCCCcHHHHHHHHH-hcCCCCCCeEEECCccCCCCChHHhhh
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLK-SGSVTALVGSSGAGKSTIVQLLA-RFYEPTGGRITVGGEDLRTFDKSEWAR 614 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~-~Ge~vAIVG~SGSGKSTLl~LL~-gly~p~~G~I~IdG~di~~i~~~~lR~ 614 (691)
.|+++|+. +|.++ ++++|+.. +|+.++|+|++|||||||+++|. .+|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58999988 87521 56677654 58999999999999999999999 5777777777665 2334455566778
Q ss_pred ceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHH--HHHcCcHHHHhcCCcc
Q 005561 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKA--AKAANAHDFIISLPQV 667 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~A--l~~A~l~dfI~~LP~G 667 (691)
.|++++|++.- ...+++++ ..+.++..+. ++..++.+++..-+..
T Consensus 77 ~v~~~f~~~~~----~~~~~r~~----gl~~~~~~~~~~l~~g~l~~~l~~~~~~ 123 (213)
T cd03279 77 EVSFTFQLGGK----KYRVERSR----GLDYDQFTRIVLLPQGEFDRFLARPVST 123 (213)
T ss_pred EEEEEEEECCe----EEEEEEec----CCCHHHHHHhhhhhhcchHHHhcCCccc
Confidence 89999999833 22333333 1455555543 3455566666554443
No 390
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.73 E-value=1.1e-08 Score=105.18 Aligned_cols=99 Identities=21% Similarity=0.358 Sum_probs=65.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHH----------------hcCCCCCC-----
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA----------------RFYEPTGG----- 595 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~----------------gly~p~~G----- 595 (691)
.|+++|- .+|. +..++++++ |+.++|+||+|||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~nf-ksy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCcc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3667763 1464 345788887 8999999999999999999998 44556666
Q ss_pred ---eEEECCccCCCC---ChHHhhhceEEEeccCCcccccHHHHHhcCCCCCCCCHHHHHHHHHHcCc
Q 005561 596 ---RITVGGEDLRTF---DKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANA 657 (691)
Q Consensus 596 ---~I~IdG~di~~i---~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l 657 (691)
+|.+++.+-... +...+++.+++++|+..++.. .++.+|++.+++..++
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-------------~~t~~ei~~~l~~~gl 128 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-------------NVTKNDVMNLLESAGF 128 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-------------EcCHHHHHHHHHHcCC
Confidence 677766432111 223467778888888766542 1345555555555544
No 391
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.69 E-value=2.7e-08 Score=98.26 Aligned_cols=99 Identities=20% Similarity=0.278 Sum_probs=71.4
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCc--c-cccHH
Q 005561 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVL--F-SVSVG 631 (691)
Q Consensus 555 vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~L--F-~gTIr 631 (691)
..+=+.+.+++|+.++|+|++||||||+++.|+++++|++|.|.+.+.+-..++ -++.++++.|+... + .-|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455667889999999999999999999999999999999999999775433222 24557777766532 2 35788
Q ss_pred HHHhcC---CCC----CCCCHHHHHHHHHHcC
Q 005561 632 ENIAYG---LPD----ENVSKDDIIKAAKAAN 656 (691)
Q Consensus 632 eNI~lG---~p~----~~~sdeeI~~Al~~A~ 656 (691)
+++... +|| .++.++|.+++++.++
T Consensus 91 ~~l~~~lR~~pd~i~igEir~~ea~~~~~a~~ 122 (186)
T cd01130 91 DLLRSALRMRPDRIIVGEVRGGEALDLLQAMN 122 (186)
T ss_pred HHHHHHhccCCCEEEEEccCcHHHHHHHHHHh
Confidence 887543 243 2455666666666553
No 392
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.68 E-value=3.2e-08 Score=104.66 Aligned_cols=96 Identities=28% Similarity=0.467 Sum_probs=65.7
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhc--------CCCCCCeEEECCccCCCCChHHhhhceEEEeccCC
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARF--------YEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPV 624 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gl--------y~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~ 624 (691)
..+|+|+||+|+||+.++|||+|||||||++++++|. |+|++|.|.+--..+..+-+.+ -||.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge---------~Ep~ 466 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGE---------YEPE 466 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcc---------cccc
Confidence 4679999999999999999999999999999999986 7899999876544332222111 1333
Q ss_pred cccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHHHH
Q 005561 625 LFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFI 661 (691)
Q Consensus 625 LF~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~dfI 661 (691)
+=.-||.|-+.= .+. +-.--.+.+..||+.|-+
T Consensus 467 f~~~tilehl~s-~tG---D~~~AveILnraGlsDAv 499 (593)
T COG2401 467 FGEVTILEHLRS-KTG---DLNAAVEILNRAGLSDAV 499 (593)
T ss_pred cCchhHHHHHhh-ccC---chhHHHHHHHhhccchhh
Confidence 334467776641 111 112235677778887754
No 393
>PRK01889 GTPase RsgA; Reviewed
Probab=98.67 E-value=1.2e-08 Score=110.60 Aligned_cols=101 Identities=24% Similarity=0.227 Sum_probs=78.8
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHh
Q 005561 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (691)
Q Consensus 556 L~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~ 635 (691)
++.+.-.+++|++++|||+||+|||||++.|+|...+..|+|.+++..-+. ...++++.+++|+.+||+..-..|+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhhc
Confidence 666777788999999999999999999999999999999999998864333 23467899999999999988888888
Q ss_pred cCCCCCC--CCHHHHHHHHHHcCcHH
Q 005561 636 YGLPDEN--VSKDDIIKAAKAANAHD 659 (691)
Q Consensus 636 lG~p~~~--~sdeeI~~Al~~A~l~d 659 (691)
++.+... ....++.+.++.+..++
T Consensus 262 l~~~~~~l~~~f~~~~~~~~~c~f~~ 287 (356)
T PRK01889 262 LWDAEDGVEETFSDIEELAAQCRFRD 287 (356)
T ss_pred ccCchhhHHHhHHHHHHHHccCCCCC
Confidence 8743211 12245666666555544
No 394
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.63 E-value=2.7e-08 Score=103.47 Aligned_cols=67 Identities=25% Similarity=0.296 Sum_probs=57.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC-hHHhhhceEEEeccCCcccccHHHH
Q 005561 567 SVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD-KSEWARVVSIVNQEPVLFSVSVGEN 633 (691)
Q Consensus 567 e~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~-~~~lR~~Ia~V~Qd~~LF~gTIreN 633 (691)
+.++|+|++|||||||++.|+|++.|++|+|.+||.++..++ ..++...+++++|+..-=..++.||
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc
Confidence 689999999999999999999999999999999999998775 5688888999999763323356554
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.7e-08 Score=105.39 Aligned_cols=62 Identities=32% Similarity=0.557 Sum_probs=56.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEEC
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVG 600 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~Id 600 (691)
-+-+.||+|+||+ ..|.+++++|-|.--.+||||||+|.|||||++||.|-++|++|+.+=+
T Consensus 586 vLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn 647 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN 647 (807)
T ss_pred eeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc
Confidence 4678999999984 4688999999999999999999999999999999999999999987643
No 396
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.59 E-value=4e-08 Score=107.88 Aligned_cols=82 Identities=26% Similarity=0.412 Sum_probs=66.8
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCC---CeEEECCccCCCCChHHh------hhceEEEeccC
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG---GRITVGGEDLRTFDKSEW------ARVVSIVNQEP 623 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~---G~I~IdG~di~~i~~~~l------R~~Ia~V~Qd~ 623 (691)
..+++++ ++|.+||+++|+|+||+|||||+++|+|+++++. |.|-.+|.+++++..+.+ |..+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 3589999 9999999999999999999999999999999986 445556666666554544 45799999998
Q ss_pred Cccc-ccHHHHHh
Q 005561 624 VLFS-VSVGENIA 635 (691)
Q Consensus 624 ~LF~-gTIreNI~ 635 (691)
-.+. -++.+|+.
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 7774 47777774
No 397
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.59 E-value=3.5e-08 Score=102.17 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=68.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhcCCCC-CCeEEECCc-cCCCCC-h-HHhhhceEEEeccCCc---------c-cccHH
Q 005561 566 GSVTALVGSSGAGKSTIVQLLARFYEPT-GGRITVGGE-DLRTFD-K-SEWARVVSIVNQEPVL---------F-SVSVG 631 (691)
Q Consensus 566 Ge~vAIVG~SGSGKSTLl~LL~gly~p~-~G~I~IdG~-di~~i~-~-~~lR~~Ia~V~Qd~~L---------F-~gTIr 631 (691)
...++|||+||||||||++.|+++..++ .|+++..|. |+-... . ..-+..|+++.|++.- . .-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999876 568998887 542211 1 1234589999999632 1 45888
Q ss_pred HHHhcCCC------CCCCCHHHHHHHHHHcCcH
Q 005561 632 ENIAYGLP------DENVSKDDIIKAAKAANAH 658 (691)
Q Consensus 632 eNI~lG~p------~~~~sdeeI~~Al~~A~l~ 658 (691)
+||..+.. +.....+++.++++.+++.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~ 137 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLN 137 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCC
Confidence 88866531 1124568999999999985
No 398
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.55 E-value=4.1e-08 Score=101.71 Aligned_cols=103 Identities=16% Similarity=0.178 Sum_probs=68.3
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHH-----h-cCC----CCCC-----------eEEECCccCCCCChHH--
Q 005561 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA-----R-FYE----PTGG-----------RITVGGEDLRTFDKSE-- 611 (691)
Q Consensus 555 vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~-----g-ly~----p~~G-----------~I~IdG~di~~i~~~~-- 611 (691)
.|+|+|++||.|+.++|.|.||||||||++-++ + +.. |..+ -|.+|..+|..-.+..
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 599999999999999999999999999998653 2 221 3222 3667776664432111
Q ss_pred --------hhh----------------ceEEEeccCCc-ccccHHHHHhcCCCCCCCCHHHHHHHHHHcCcHH
Q 005561 612 --------WAR----------------VVSIVNQEPVL-FSVSVGENIAYGLPDENVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 612 --------lR~----------------~Ia~V~Qd~~L-F~gTIreNI~lG~p~~~~sdeeI~~Al~~A~l~d 659 (691)
+|+ .+.|..++... .+-|+.||+.|.... ...++..++++..++.+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~--~~~~~~~~~L~~vgL~~ 160 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI--PKIARKLQTLCDVGLGY 160 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh--hhHHHHHHHHHHcCCch
Confidence 111 24455555543 356899998876322 23466778888888865
No 399
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.54 E-value=9.5e-08 Score=105.72 Aligned_cols=68 Identities=26% Similarity=0.419 Sum_probs=59.3
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECC---ccCCC-----CChHHhhhceEEEec
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG---EDLRT-----FDKSEWARVVSIVNQ 621 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG---~di~~-----i~~~~lR~~Ia~V~Q 621 (691)
..+++++ +++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.| .++.+ ++...+++.|.+|.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 4589999 99999999999999999999999999999999999999954 44453 455678899999965
No 400
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.51 E-value=4.3e-08 Score=97.80 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=58.9
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcc-cccHH
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF-SVSVG 631 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF-~gTIr 631 (691)
.+|++|++++. |+.++|+||+||||||+++.|++..- +..+|.++... .++.|...+| +-|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 35778776665 79999999999999999999987443 23466655321 2556655555 56999
Q ss_pred HHHhcCCCCCCCCHHHHHHHHHHcC
Q 005561 632 ENIAYGLPDENVSKDDIIKAAKAAN 656 (691)
Q Consensus 632 eNI~lG~p~~~~sdeeI~~Al~~A~ 656 (691)
||+.++........+++.++++.++
T Consensus 78 d~l~~~~s~~~~e~~~~~~iL~~~~ 102 (199)
T cd03283 78 DDLRDGISYFYAELRRLKEIVEKAK 102 (199)
T ss_pred hccccccChHHHHHHHHHHHHHhcc
Confidence 9998874210011244666666665
No 401
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.51 E-value=9.4e-08 Score=92.73 Aligned_cols=107 Identities=26% Similarity=0.325 Sum_probs=80.9
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCC----CCCCeEEECCccCCCCChHHhhh----ceEEEeccCC
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYE----PTGGRITVGGEDLRTFDKSEWAR----VVSIVNQEPV 624 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~----p~~G~I~IdG~di~~i~~~~lR~----~Ia~V~Qd~~ 624 (691)
..+.+++|++...||.-++||+||||||-++|.++|..+ .+.-..++|++|+-+++++.-|+ .|++++|||.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 468999999999999999999999999999999999876 34456678999999999888776 5789999996
Q ss_pred cc-c--cc----HHHHHhcCCCCC------CCCHHHHHHHHHHcCcHH
Q 005561 625 LF-S--VS----VGENIAYGLPDE------NVSKDDIIKAAKAANAHD 659 (691)
Q Consensus 625 LF-~--gT----IreNI~lG~p~~------~~sdeeI~~Al~~A~l~d 659 (691)
-- + .+ +-+||-.+--.. .-...+-++.+.++|++|
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKd 147 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKD 147 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhcccc
Confidence 42 2 22 345664321000 123456778899999954
No 402
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.50 E-value=6.7e-08 Score=98.43 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=31.4
Q ss_pred CcccccceeEEEeCCCEEEEECCCCCcHHHHH-HHH
Q 005561 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIV-QLL 586 (691)
Q Consensus 552 ~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl-~LL 586 (691)
+.++|+|+||+|++||.+||+|+||||||||+ ..+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 45689999999999999999999999999996 444
No 403
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.49 E-value=1.6e-07 Score=101.65 Aligned_cols=89 Identities=20% Similarity=0.282 Sum_probs=67.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHhcCCC--CCC-eEEECCccCCCCChHHhhhceEEEeccC-----CcccccHHHHHh
Q 005561 564 KSGSVTALVGSSGAGKSTIVQLLARFYEP--TGG-RITVGGEDLRTFDKSEWARVVSIVNQEP-----VLFSVSVGENIA 635 (691)
Q Consensus 564 ~~Ge~vAIVG~SGSGKSTLl~LL~gly~p--~~G-~I~IdG~di~~i~~~~lR~~Ia~V~Qd~-----~LF~gTIreNI~ 635 (691)
++|..++|+||+||||||+++.|++++.+ .+| .|.....++ ++..+.+++..++|.|.. .-|..+|+++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999853 334 565555554 588777777788888874 368999999998
Q ss_pred cCCCCC----CCCHHH-HHHHHHH
Q 005561 636 YGLPDE----NVSKDD-IIKAAKA 654 (691)
Q Consensus 636 lG~p~~----~~sdee-I~~Al~~ 654 (691)
.. ||- ++.|.| +..|++.
T Consensus 211 ~~-Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 211 RK-PHAILVGEARDAETISAALEA 233 (358)
T ss_pred cC-CCEEeeeeeCCHHHHHHHHHH
Confidence 63 652 345555 4567777
No 404
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.49 E-value=9.9e-08 Score=95.63 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=56.7
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHH----hcCCCCCCeEEECCccCCCCChHHhhhceEEEeccC-----Ccccc-c
Q 005561 560 NLTLKSGSVTALVGSSGAGKSTIVQLLA----RFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEP-----VLFSV-S 629 (691)
Q Consensus 560 sL~I~~Ge~vAIVG~SGSGKSTLl~LL~----gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~-----~LF~g-T 629 (691)
++++.+| .++|+|+||||||||++.|. |.-.|..|.+.-+.. .+....-+..|++++|++ .++.. |
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~---~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPK---LIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHH---HHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 4667777 99999999999999999994 888888887762222 223334567899999998 44432 9
Q ss_pred HHHHHhcC
Q 005561 630 VGENIAYG 637 (691)
Q Consensus 630 IreNI~lG 637 (691)
+.||+.++
T Consensus 93 ~~~~~~~~ 100 (204)
T cd03240 93 ILENVIFC 100 (204)
T ss_pred Hhhceeee
Confidence 99999876
No 405
>PRK08149 ATP synthase SpaL; Validated
Probab=98.47 E-value=2.5e-07 Score=101.58 Aligned_cols=69 Identities=28% Similarity=0.406 Sum_probs=61.3
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCC---CeEEECCccCCCCChHHhh----hceEEEecc
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG---GRITVGGEDLRTFDKSEWA----RVVSIVNQE 622 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~---G~I~IdG~di~~i~~~~lR----~~Ia~V~Qd 622 (691)
..+++++ +++.+||+++|+|+||+|||||++.|+|..+++. |.|-.+|.++.++..+.++ +++++|...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 4689999 9999999999999999999999999999999988 9999999999888766665 567777654
No 406
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.42 E-value=3.5e-07 Score=101.32 Aligned_cols=94 Identities=17% Similarity=0.332 Sum_probs=80.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChH-Hhhhc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKS-EWARV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~-~lR~~ 615 (691)
.++++|++.. ..++|+||++.+||.++|.|--|||+|=+++.|.|..++.+|+|.+||++++--++. ..+..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3678887642 147999999999999999999999999999999999999999999999988877744 78889
Q ss_pred eEEEeccC----CcccccHHHHHhcC
Q 005561 616 VSIVNQEP----VLFSVSVGENIAYG 637 (691)
Q Consensus 616 Ia~V~Qd~----~LF~gTIreNI~lG 637 (691)
|+|||-|= .+-.-+|++||.+.
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~ 361 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLA 361 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehH
Confidence 99999654 35577999999876
No 407
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.37 E-value=2.4e-07 Score=90.67 Aligned_cols=78 Identities=32% Similarity=0.426 Sum_probs=57.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhcCC------------CCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHH
Q 005561 566 GSVTALVGSSGAGKSTIVQLLARFYE------------PTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGEN 633 (691)
Q Consensus 566 Ge~vAIVG~SGSGKSTLl~LL~gly~------------p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreN 633 (691)
|+.++|+||||||||||++.|++.++ |..|+ ++|.+..-++.+.+.+.+ .++.++..+++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999864 33444 466666666666666654 57888888888888
Q ss_pred HhcCCCCCCCCHHHHHHHHHH
Q 005561 634 IAYGLPDENVSKDDIIKAAKA 654 (691)
Q Consensus 634 I~lG~p~~~~sdeeI~~Al~~ 654 (691)
. || .+.+.+.++++.
T Consensus 76 ~-y~-----~~~~~i~~~~~~ 90 (180)
T TIGR03263 76 Y-YG-----TPKSPVEEALAA 90 (180)
T ss_pred e-eC-----CcHHHHHHHHHC
Confidence 4 66 345666666654
No 408
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.35 E-value=4.3e-07 Score=88.77 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=49.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhh-ceEEEeccCC-cccccHHHHHhcC
Q 005561 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR-VVSIVNQEPV-LFSVSVGENIAYG 637 (691)
Q Consensus 565 ~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~-~Ia~V~Qd~~-LF~gTIreNI~lG 637 (691)
+||.++|+|+|||||||+++.|++++.+ +.+||.++... ..+|+ ..++..|+.. +..-++.+|+.++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999999887 68999887432 33443 3456666643 3455677777654
No 409
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.35 E-value=2.3e-07 Score=86.92 Aligned_cols=74 Identities=32% Similarity=0.479 Sum_probs=58.2
Q ss_pred EEEECCCCCcHHHHHHHHHhcCCC-------------CCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHh
Q 005561 569 TALVGSSGAGKSTIVQLLARFYEP-------------TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (691)
Q Consensus 569 vAIVG~SGSGKSTLl~LL~gly~p-------------~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~ 635 (691)
++|+||||||||||++.|++.+++ ..|+ +||++..-++..++++. +.|+.++..+++.+| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999764 4454 58888888888888874 568889999999988 4
Q ss_pred cCCCCCCCCHHHHHHHHH
Q 005561 636 YGLPDENVSKDDIIKAAK 653 (691)
Q Consensus 636 lG~p~~~~sdeeI~~Al~ 653 (691)
||. ..+++.++.+
T Consensus 76 yg~-----~~~~i~~~~~ 88 (137)
T cd00071 76 YGT-----SKAAVEEALA 88 (137)
T ss_pred ecC-----cHHHHHHHHh
Confidence 773 3455555543
No 410
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.33 E-value=5.9e-07 Score=88.64 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=47.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEecc
Q 005561 566 GSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQE 622 (691)
Q Consensus 566 Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd 622 (691)
|+.++|+||||||||||+++|++...+ .+.+++..+........++.+++++|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999998876 688888888877777778889999998
No 411
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.32 E-value=1e-07 Score=96.07 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=57.7
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhh-hc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWA-RV 615 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR-~~ 615 (691)
.|+++|.- +|. +..+++++++ +.++|+||+||||||++++|. +++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 47888875 775 3468999988 899999999999999999997 34554432 233 57
Q ss_pred eEEEeccCCcccc-cHHHHHhcC
Q 005561 616 VSIVNQEPVLFSV-SVGENIAYG 637 (691)
Q Consensus 616 Ia~V~Qd~~LF~g-TIreNI~lG 637 (691)
+++++|+..++.. |.++++.+.
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~ 83 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHF 83 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEE
Confidence 9999999877654 677766543
No 412
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.31 E-value=1e-06 Score=94.03 Aligned_cols=94 Identities=21% Similarity=0.259 Sum_probs=65.5
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccC--CcccccHHHHHhc
Q 005561 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEP--VLFSVSVGENIAY 636 (691)
Q Consensus 559 IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~--~LF~gTIreNI~l 636 (691)
+++.+++|+.++|+|++||||||+++.|++++++..|.+.|+ |..++.... ++.+.++.|.. .--..|..+.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~~~~~~~~~~~~l~~ 213 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGGQGLAKVTPKDLLQS 213 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCCCCcCccCHHHHHHH
Confidence 567899999999999999999999999999999999999996 456665544 55666655432 2223466666542
Q ss_pred C---CCC----CCCCHHHHHHHHHHc
Q 005561 637 G---LPD----ENVSKDDIIKAAKAA 655 (691)
Q Consensus 637 G---~p~----~~~sdeeI~~Al~~A 655 (691)
. +|+ ++...+|++++++.+
T Consensus 214 ~Lr~~pd~ii~gE~r~~e~~~~l~a~ 239 (308)
T TIGR02788 214 CLRMRPDRIILGELRGDEAFDFIRAV 239 (308)
T ss_pred HhcCCCCeEEEeccCCHHHHHHHHHH
Confidence 2 232 134456666666544
No 413
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.29 E-value=1.3e-06 Score=87.24 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=59.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhcCCCC-CCeEEECCccCCCCChHHhhhceEEEec-----cCCcccccHHHHHhcCCCCC
Q 005561 568 VTALVGSSGAGKSTIVQLLARFYEPT-GGRITVGGEDLRTFDKSEWARVVSIVNQ-----EPVLFSVSVGENIAYGLPDE 641 (691)
Q Consensus 568 ~vAIVG~SGSGKSTLl~LL~gly~p~-~G~I~IdG~di~~i~~~~lR~~Ia~V~Q-----d~~LF~gTIreNI~lG~p~~ 641 (691)
.+.|+||+||||||+++.|++.+.+. .|.|..-+.++. +.... ..+++.| ++.-|...++.+++.. |+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~~---~~~~i~q~~vg~~~~~~~~~i~~aLr~~-pd~ 77 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHES---KRSLINQREVGLDTLSFENALKAALRQD-PDV 77 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-ccccC---ccceeeecccCCCccCHHHHHHHHhcCC-cCE
Confidence 58899999999999999999888754 678777666653 33222 3355666 6678999999999975 541
Q ss_pred ----CC-CHHHHHHHHHHcC
Q 005561 642 ----NV-SKDDIIKAAKAAN 656 (691)
Q Consensus 642 ----~~-sdeeI~~Al~~A~ 656 (691)
++ ++|.+..+++.+.
T Consensus 78 ii~gEird~e~~~~~l~~a~ 97 (198)
T cd01131 78 ILVGEMRDLETIRLALTAAE 97 (198)
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 22 5666666666654
No 414
>PLN02796 D-glycerate 3-kinase
Probab=98.24 E-value=4.6e-07 Score=96.40 Aligned_cols=62 Identities=21% Similarity=0.325 Sum_probs=53.7
Q ss_pred cccccceeEEE---eCCCE-----EEEECCCCCcHHHHHHHHHhcCCCC---CCeEEECCccCCCCChHHhhh
Q 005561 553 VVILNGLNLTL---KSGSV-----TALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTFDKSEWAR 614 (691)
Q Consensus 553 ~~vL~~IsL~I---~~Ge~-----vAIVG~SGSGKSTLl~LL~gly~p~---~G~I~IdG~di~~i~~~~lR~ 614 (691)
..+++++++.+ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+...+...+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 35788999887 67887 9999999999999999999999875 588999999988777777766
No 415
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.22 E-value=2.4e-06 Score=83.52 Aligned_cols=63 Identities=25% Similarity=0.329 Sum_probs=50.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEE-----------CCccCCCCChHHhh-----hceEEEeccCCccccc
Q 005561 566 GSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV-----------GGEDLRTFDKSEWA-----RVVSIVNQEPVLFSVS 629 (691)
Q Consensus 566 Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~I-----------dG~di~~i~~~~lR-----~~Ia~V~Qd~~LF~gT 629 (691)
|+.++|+|+|||||||+++.|++.+.+. |.+.+ +|.+....+.+++. +.++.+.|...++.|+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 6789999999999999999999988654 65544 77787777776653 3599999998777664
No 416
>PRK15494 era GTPase Era; Provisional
Probab=98.20 E-value=9.7e-07 Score=95.37 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=50.6
Q ss_pred CCcCcEEEEeeEEECCCCCCcccccceeEEEeCCC-------EEEEECCCCCcHHHHHHHHHhcC
Q 005561 533 AWSGDICLEDVYFSYPLRPDVVILNGLNLTLKSGS-------VTALVGSSGAGKSTIVQLLARFY 590 (691)
Q Consensus 533 ~~~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge-------~vAIVG~SGSGKSTLl~LL~gly 590 (691)
.+.|++++++|+|+|+. ..++++++++++++|+ +++|||.+|+|||||++-|.|-.
T Consensus 14 ~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 14 EFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 36799999999999983 4579999999999999 99999999999999999998753
No 417
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.18 E-value=1.6e-06 Score=95.75 Aligned_cols=104 Identities=19% Similarity=0.294 Sum_probs=74.7
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC-CCCeEEE---CCccCCCCChHHhh---hceEEE-----ec
Q 005561 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRITV---GGEDLRTFDKSEWA---RVVSIV-----NQ 621 (691)
Q Consensus 554 ~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-~~G~I~I---dG~di~~i~~~~lR---~~Ia~V-----~Q 621 (691)
.+++++ ++|.+||+++|+|+||+|||||++.|+|+.++ +.|.|.+ +|.++.++..+.++ .+.++| .|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 468887 99999999999999999999999999998844 4467777 55777777666665 235566 99
Q ss_pred cCC------cccccHHHHHhcCCCCC---CCCHHHHHHHHHHcCcH
Q 005561 622 EPV------LFSVSVGENIAYGLPDE---NVSKDDIIKAAKAANAH 658 (691)
Q Consensus 622 d~~------LF~gTIreNI~lG~p~~---~~sdeeI~~Al~~A~l~ 658 (691)
+|. .-..+|.|.++.-..+. .-+..+..+|++.+++.
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 773 24557888886421110 11456677788888773
No 418
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.15 E-value=3.2e-06 Score=84.92 Aligned_cols=70 Identities=23% Similarity=0.351 Sum_probs=50.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccc---cH--HHHHhcCC
Q 005561 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSV---SV--GENIAYGL 638 (691)
Q Consensus 564 ~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~g---TI--reNI~lG~ 638 (691)
+++..|+|+|+||||||||++.|.+.+. ...+.+++||.+.++. +. +.+..++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4678999999999999999999999872 1358888999887755 23 33455665
Q ss_pred CCCCCCHHHHHHHHHHc
Q 005561 639 PDENVSKDDIIKAAKAA 655 (691)
Q Consensus 639 p~~~~sdeeI~~Al~~A 655 (691)
|+ ..+.+.+.+.++..
T Consensus 63 ~~-~~~~~~l~~~l~~l 78 (209)
T PRK05480 63 PD-AFDHDLLIEHLKAL 78 (209)
T ss_pred cc-cccHHHHHHHHHHH
Confidence 54 34566676666554
No 419
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.13 E-value=5e-06 Score=91.52 Aligned_cols=69 Identities=29% Similarity=0.424 Sum_probs=56.3
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC--------ChHHhhhceEEEecc
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF--------DKSEWARVVSIVNQE 622 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i--------~~~~lR~~Ia~V~Qd 622 (691)
..+++++ +++.+||+++|+|++|+|||||++.|++..+++.|.|.+.|..-++. ..+.+++.+.++.|-
T Consensus 125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~ts 201 (413)
T TIGR03497 125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATS 201 (413)
T ss_pred ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECC
Confidence 4689999 99999999999999999999999999999999999999998766543 222344555566553
No 420
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.11 E-value=1.7e-06 Score=86.79 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=27.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHhcCCC
Q 005561 564 KSGSVTALVGSSGAGKSTIVQLLARFYEP 592 (691)
Q Consensus 564 ~~Ge~vAIVG~SGSGKSTLl~LL~gly~p 592 (691)
++|+.+||+|+||||||||++.|.+++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
No 421
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.11 E-value=2.1e-06 Score=85.58 Aligned_cols=56 Identities=21% Similarity=0.323 Sum_probs=44.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHhcCCC-CCCeEEECCccCCCCChHHhhhceEEEeccC
Q 005561 564 KSGSVTALVGSSGAGKSTIVQLLARFYEP-TGGRITVGGEDLRTFDKSEWARVVSIVNQEP 623 (691)
Q Consensus 564 ~~Ge~vAIVG~SGSGKSTLl~LL~gly~p-~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~ 623 (691)
++|+.++|+|.||||||||+++|.+.+.+ ..|.+.+||.+++. .+...++|++|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 45889999999999999999999986654 45789999977652 2334578888875
No 422
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.03 E-value=7.5e-06 Score=98.47 Aligned_cols=83 Identities=29% Similarity=0.554 Sum_probs=73.9
Q ss_pred CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCC---CCCeEEECCccCCCCChHHhhhceEEEeccCCcc-c
Q 005561 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEP---TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF-S 627 (691)
Q Consensus 552 ~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p---~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF-~ 627 (691)
...+|+|++.-++||+.+-+.|+.|||||||++.|+|-.+- ..|+|.+||.+.+++.. ++.++|.+|+..-| .
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccce
Confidence 34689999999999999999999999999999999997764 25799999999999887 88999999888777 5
Q ss_pred ccHHHHHhcC
Q 005561 628 VSVGENIAYG 637 (691)
Q Consensus 628 gTIreNI~lG 637 (691)
-||||-|.|.
T Consensus 204 lTVreTldFa 213 (1391)
T KOG0065|consen 204 LTVRETLDFA 213 (1391)
T ss_pred eEEeehhhHH
Confidence 6999999875
No 423
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.02 E-value=7.6e-06 Score=89.92 Aligned_cols=60 Identities=30% Similarity=0.495 Sum_probs=53.3
Q ss_pred cCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeE
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRI 597 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I 597 (691)
.-+|.++|++++|. +.++++|..|++.+|++++|+|++||||||+++.+.|--.|..-.+
T Consensus 73 s~dvk~~sls~s~~---g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~ 132 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH---GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI 132 (614)
T ss_pred cccceeeeeeeccC---CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc
Confidence 45799999999996 3578999999999999999999999999999999999888865444
No 424
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=8.4e-06 Score=89.09 Aligned_cols=51 Identities=39% Similarity=0.623 Sum_probs=47.2
Q ss_pred cCcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHh
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLAR 588 (691)
Q Consensus 535 ~g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~g 588 (691)
..+|..+|.+.+|. ++..|++-++++..|-++++||++|+|||||++.|..
T Consensus 78 ~~Di~~~~fdLa~G---~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG---GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ccceeeeeeeeeec---chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 45799999999996 3578999999999999999999999999999999997
No 425
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.94 E-value=8.3e-06 Score=86.86 Aligned_cols=53 Identities=34% Similarity=0.450 Sum_probs=47.1
Q ss_pred CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCC
Q 005561 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLR 605 (691)
Q Consensus 552 ~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~ 605 (691)
+..+++++ +++.+||+++|+|++|+|||||++.|+|+.+|+.|.+..-|.+-+
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ 108 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGR 108 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCc
Confidence 35689999 999999999999999999999999999999999998887665433
No 426
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=1.1e-05 Score=88.07 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=88.6
Q ss_pred CcEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhc
Q 005561 536 GDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARV 615 (691)
Q Consensus 536 g~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~ 615 (691)
..+++.+|+|.|+.. +.+.+.++++.++.-+++++||+.|+||||+++++.+-.+|..|.+-+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 469999999999732 22789999999999999999999999999999999999999999998877 567
Q ss_pred eEEEeccCCcc-cccHHHHHhc--CCCCCCCCHHHHHHHHHHcCcHHHHhc
Q 005561 616 VSIVNQEPVLF-SVSVGENIAY--GLPDENVSKDDIIKAAKAANAHDFIIS 663 (691)
Q Consensus 616 Ia~V~Qd~~LF-~gTIreNI~l--G~p~~~~sdeeI~~Al~~A~l~dfI~~ 663 (691)
|+|-.|.-.=| +-.+-.=-.+ -.|. .++||+.+.|...|++.-+..
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG--~~~ee~r~hl~~~Gl~g~la~ 477 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPG--KTEEEIRRHLGSFGLSGELAL 477 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCC--CCHHHHHHHHHhcCCCchhhh
Confidence 88888866544 2122111111 1232 489999999999998765543
No 427
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.93 E-value=8.7e-06 Score=90.12 Aligned_cols=76 Identities=25% Similarity=0.275 Sum_probs=57.7
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC---hHHh---hhceEEEeccCCcc
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD---KSEW---ARVVSIVNQEPVLF 626 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~---~~~l---R~~Ia~V~Qd~~LF 626 (691)
..+++++ +++.+|++++|+|++|+|||||++.|+|..+|+.|.+...|.+-+++. .+.+ ....+++.|.+..+
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~ 211 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDR 211 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccC
Confidence 4689999 999999999999999999999999999999999999988665544443 1111 12355666666555
Q ss_pred ccc
Q 005561 627 SVS 629 (691)
Q Consensus 627 ~gT 629 (691)
+--
T Consensus 212 p~~ 214 (422)
T TIGR02546 212 PSL 214 (422)
T ss_pred CHH
Confidence 433
No 428
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.93 E-value=5.8e-06 Score=92.29 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=50.2
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhc
Q 005561 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAY 636 (691)
Q Consensus 557 ~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~l 636 (691)
++.+..+++|+.+++||++|+||||.+.-|++.+...+|.. +|++|.+|+ |.-+..||+.+
T Consensus 247 ~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 247 DSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred cCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHH
Confidence 34455567899999999999999999999999987777642 578999998 66778899865
No 429
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.91 E-value=7e-06 Score=90.43 Aligned_cols=68 Identities=16% Similarity=0.260 Sum_probs=58.4
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF 607 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i 607 (691)
.++.++++-.|.. +..+++++ ++|.+||+++|+|++|+|||||++.|+|..+++.|.|.+.|..-+++
T Consensus 129 ~~~r~~v~~~l~t--Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv 196 (433)
T PRK07594 129 AMVRQPITQPLMT--GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV 196 (433)
T ss_pred ceeccCHhheeCC--Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHH
Confidence 4777888877753 35799999 99999999999999999999999999999999999988877654443
No 430
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.90 E-value=1e-05 Score=90.97 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=57.6
Q ss_pred EEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC
Q 005561 540 LEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF 607 (691)
Q Consensus 540 f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i 607 (691)
++|++..|+ ...+++++++.+..|+.++++|++|||||||++.|.|+.+|.+|++.+++..|..+
T Consensus 187 ~~d~~~v~G---q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 187 QHDLSDVIG---QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred ccCeEEEEC---cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 457777775 24589999999999999999999999999999999999999999999999877544
No 431
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.89 E-value=1.2e-05 Score=85.94 Aligned_cols=73 Identities=22% Similarity=0.190 Sum_probs=57.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC------ChHHhhhceEEEeccCCccc-ccHHHHHhc
Q 005561 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF------DKSEWARVVSIVNQEPVLFS-VSVGENIAY 636 (691)
Q Consensus 564 ~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i------~~~~lR~~Ia~V~Qd~~LF~-gTIreNI~l 636 (691)
++|+.+++||++||||||++.-|++.+.+..|+|.+.+.|.... ....-|..+.+++|+..... .++.+++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999889999999887442 23344667999998655443 356777653
No 432
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.87 E-value=1.7e-05 Score=81.04 Aligned_cols=55 Identities=20% Similarity=0.400 Sum_probs=40.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcCCCCCCe----EEECCccCCCCChHHhhhceEEEeccC
Q 005561 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGR----ITVGGEDLRTFDKSEWARVVSIVNQEP 623 (691)
Q Consensus 565 ~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~----I~IdG~di~~i~~~~lR~~Ia~V~Qd~ 623 (691)
+...+||.|+||||||||++.|.+...+.+|. |.+|+.. .+ ...+...+++++..
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~---~~-~~~~~~~g~~~~~~ 90 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH---LD-NAVLDAHGLRPRKG 90 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc---CC-HHHHHhcccccccC
Confidence 35689999999999999999999999999998 5555532 22 23444567766543
No 433
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.87 E-value=8.3e-06 Score=96.74 Aligned_cols=64 Identities=28% Similarity=0.464 Sum_probs=58.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcC----------------------------------------------------CCCC
Q 005561 567 SVTALVGSSGAGKSTIVQLLARFY----------------------------------------------------EPTG 594 (691)
Q Consensus 567 e~vAIVG~SGSGKSTLl~LL~gly----------------------------------------------------~p~~ 594 (691)
..+||.||+||||||++++|++.+ +|.+
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS 81 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence 479999999999999999999886 2778
Q ss_pred CeEEECCccCC-CCChHHhhhceEEEeccCCcccccHHHHHh
Q 005561 595 GRITVGGEDLR-TFDKSEWARVVSIVNQEPVLFSVSVGENIA 635 (691)
Q Consensus 595 G~I~IdG~di~-~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~ 635 (691)
|.|++||.|+. ++..+++++.++.|.|.|. ||+|+.
T Consensus 82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~-----vr~~l~ 118 (712)
T PRK09518 82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPP-----VRNVLI 118 (712)
T ss_pred cEEEECCeEchHhhCcHHHHHHHHHHhCCHH-----HHHHHH
Confidence 89999999999 8999999999999999998 899984
No 434
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.85 E-value=8.4e-06 Score=89.78 Aligned_cols=67 Identities=30% Similarity=0.472 Sum_probs=52.7
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCC---CeEEECCccCCCCChH---HhhhceEEEecc
Q 005561 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG---GRITVGGEDLRTFDKS---EWARVVSIVNQE 622 (691)
Q Consensus 555 vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~---G~I~IdG~di~~i~~~---~lR~~Ia~V~Qd 622 (691)
+++.+ +++.+||+++|+|++|+|||||++.|+|+.+|+. |.|-.+|.++.++-.+ .-....++|.|.
T Consensus 165 aID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~ 237 (455)
T PRK07960 165 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAA 237 (455)
T ss_pred eeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEE
Confidence 44444 9999999999999999999999999999999986 8999999988653211 112346666664
No 435
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=97.84 E-value=0.058 Score=56.63 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=46.3
Q ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005561 422 GSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSI 472 (691)
Q Consensus 422 ~~lv~~g~ltvG~lva~~~~~~~l~~pl~~l~~~~~~l~~~~~s~~Ri~~i 472 (691)
+.-+..|.+|+|.+........++..+++.+.+.+.++.+.+...+|+.++
T Consensus 260 ~Psi~ag~iTLG~~~Qi~~aF~~V~~sfq~lv~~W~tivEL~Si~kRL~~F 310 (315)
T PF05992_consen 260 IPSIVAGAITLGVLQQISNAFGQVRSSFQYLVNSWTTIVELRSIYKRLRAF 310 (315)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344567999999999999999999999999999999999999999999876
No 436
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.84 E-value=8.5e-06 Score=89.99 Aligned_cols=53 Identities=32% Similarity=0.568 Sum_probs=43.4
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCC---CeEEECCccCCC
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG---GRITVGGEDLRT 606 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~---G~I~IdG~di~~ 606 (691)
..+++++ ++|.+||+++|+|++|+|||||++.|+|+.+|+- |.|-.+|.++++
T Consensus 156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~~ 211 (451)
T PRK05688 156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKE 211 (451)
T ss_pred eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHHH
Confidence 4579999 9999999999999999999999999999998762 444445544443
No 437
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.82 E-value=1.7e-05 Score=89.41 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=50.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCccc-ccHHHHHh
Q 005561 567 SVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFS-VSVGENIA 635 (691)
Q Consensus 567 e~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~-gTIreNI~ 635 (691)
-.|||.|+||||||||++.|+++. |..|.|.+||... ..+.+.+.+|+|.+|+ .++.+||.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~-------~~~~i~~nfD~P~a~D~d~L~enL~ 127 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYND-------SSRIIDGNFDDPRLTDYDTLLDNIH 127 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceec-------chhhhCccCCChhhcchhHHHHHHH
Confidence 489999999999999999999997 5789999999741 1234678899999986 47888884
No 438
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.81 E-value=1.3e-05 Score=82.76 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=60.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCcc-C------CCCChHHhhhceEEEeccC--CcccccHHHHHh-c
Q 005561 567 SVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED-L------RTFDKSEWARVVSIVNQEP--VLFSVSVGENIA-Y 636 (691)
Q Consensus 567 e~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~d-i------~~i~~~~lR~~Ia~V~Qd~--~LF~gTIreNI~-l 636 (691)
..++|+|++|||||||+..|+++..+..|+++.++.+ + ...+.....-.+.+..|++ .++..+++++-. |
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765532 1 1111223334455555553 345666655432 1
Q ss_pred CCCCCCCCHHHHHHHHHHcCcH
Q 005561 637 GLPDENVSKDDIIKAAKAANAH 658 (691)
Q Consensus 637 G~p~~~~sdeeI~~Al~~A~l~ 658 (691)
.......+.+++.+.++..+++
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~ 124 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINIL 124 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCC
Confidence 1112236788899999999984
No 439
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.81 E-value=3.3e-05 Score=92.94 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=56.0
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHH------hcCC---CCCCeEEECCccCCCC
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA------RFYE---PTGGRITVGGEDLRTF 607 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~------gly~---p~~G~I~IdG~di~~i 607 (691)
.|+++|++. ..|+|+|++|++|+.++|+|+||||||||++=.+ ++.+ +..+.-.++|.
T Consensus 612 ~l~l~~~~~--------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~----- 678 (924)
T TIGR00630 612 FLTLKGARE--------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGL----- 678 (924)
T ss_pred eEEEEeCcc--------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccc-----
Confidence 489999862 2499999999999999999999999999998222 2222 11111122332
Q ss_pred ChHHhhhceEEEeccCCcccccHHHHHh
Q 005561 608 DKSEWARVVSIVNQEPVLFSVSVGENIA 635 (691)
Q Consensus 608 ~~~~lR~~Ia~V~Qd~~LF~gTIreNI~ 635 (691)
+--..+-+|.|.|. ..|-|.|+.
T Consensus 679 ---~~~~~~v~vdQ~pi--~~~~RS~~a 701 (924)
T TIGR00630 679 ---EHLDKVIHIDQSPI--GRTPRSNPA 701 (924)
T ss_pred ---cCCCceEEEecCCC--CCCCCCchh
Confidence 12346889999986 567777763
No 440
>PRK07261 topology modulation protein; Provisional
Probab=97.80 E-value=1.7e-05 Score=77.28 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=44.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCcc----CCCCChHHhhh-ceEEEeccCCcccccHHH
Q 005561 567 SVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGED----LRTFDKSEWAR-VVSIVNQEPVLFSVSVGE 632 (691)
Q Consensus 567 e~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~d----i~~i~~~~lR~-~Ia~V~Qd~~LF~gTIre 632 (691)
++++|+|+||||||||++.|++.+... .|..|... ..+.+.+++.+ .-.++.|+.++++|+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~--~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~wIidg~~~~ 69 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCP--VLHLDTLHFQPNWQERDDDDMIADISNFLLKHDWIIDGNYSW 69 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCC--eEecCCEEeccccccCCHHHHHHHHHHHHhCCCEEEcCcchh
Confidence 479999999999999999999877542 33344332 22444444444 345788999999999654
No 441
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.79 E-value=2.1e-05 Score=78.49 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=34.8
Q ss_pred ccceeEEEeCCC-EEEEECCCCCcHHHHHHHHH--------hcCCCCCC
Q 005561 556 LNGLNLTLKSGS-VTALVGSSGAGKSTIVQLLA--------RFYEPTGG 595 (691)
Q Consensus 556 L~~IsL~I~~Ge-~vAIVG~SGSGKSTLl~LL~--------gly~p~~G 595 (691)
..++|+++.+|+ +++|+||+|||||||++.|. |++-|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~ 65 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE 65 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc
Confidence 457899999996 69999999999999999999 77777543
No 442
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.77 E-value=2.6e-05 Score=79.34 Aligned_cols=69 Identities=28% Similarity=0.297 Sum_probs=55.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcC---CCCCCeE--------EECCccCCCC-ChHHhhhceEEEe------ccCCcccc
Q 005561 567 SVTALVGSSGAGKSTIVQLLARFY---EPTGGRI--------TVGGEDLRTF-DKSEWARVVSIVN------QEPVLFSV 628 (691)
Q Consensus 567 e~vAIVG~SGSGKSTLl~LL~gly---~p~~G~I--------~IdG~di~~i-~~~~lR~~Ia~V~------Qd~~LF~g 628 (691)
-.++|+|++||||||+.++|+.-+ .++.|.+ .-+|.|+.+. ...++.+++.++. |+.++++.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNGE 84 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECCc
Confidence 579999999999999999998555 7888986 4678888776 3556666777777 77888888
Q ss_pred cHHHHHh
Q 005561 629 SVGENIA 635 (691)
Q Consensus 629 TIreNI~ 635 (691)
.+.+||+
T Consensus 85 ~i~~~lr 91 (225)
T PRK00023 85 DVTDEIR 91 (225)
T ss_pred chHHhhC
Confidence 8988875
No 443
>PRK05922 type III secretion system ATPase; Validated
Probab=97.77 E-value=5.5e-05 Score=83.34 Aligned_cols=54 Identities=26% Similarity=0.377 Sum_probs=46.7
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF 607 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i 607 (691)
..+++.+ +++.+||+++|+|++|+|||||++.|+|..+++.|.+..-|..-++.
T Consensus 145 Ir~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGerg~ev 198 (434)
T PRK05922 145 IKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERGREV 198 (434)
T ss_pred ceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCCCchH
Confidence 3467776 99999999999999999999999999999999999997777654444
No 444
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.77 E-value=3.5e-05 Score=61.29 Aligned_cols=36 Identities=28% Similarity=0.535 Sum_probs=28.6
Q ss_pred ceeEEEeC-CCEEEEECCCCCcHHHHHHHHHhcCCCC
Q 005561 558 GLNLTLKS-GSVTALVGSSGAGKSTIVQLLARFYEPT 593 (691)
Q Consensus 558 ~IsL~I~~-Ge~vAIVG~SGSGKSTLl~LL~gly~p~ 593 (691)
+-.+++.+ |+.+.|.|+||||||||+..+.=..-+.
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34567775 5799999999999999999988655544
No 445
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.77 E-value=2.2e-05 Score=86.84 Aligned_cols=54 Identities=33% Similarity=0.453 Sum_probs=48.6
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF 607 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i 607 (691)
..+++++ +++.+||+++|+|++|+|||||++.++|+.+++.|.|...|..-+++
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ev 204 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREV 204 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChHHH
Confidence 4589999 99999999999999999999999999999999999999888644443
No 446
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.77 E-value=2.7e-05 Score=81.52 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=41.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCC
Q 005561 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPV 624 (691)
Q Consensus 568 ~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~ 624 (691)
.++|+|+|||||||+++.|+++..+..|.+...+ |+..++... |+..++.+|+|.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~-r~~~g~~~~~p~ 55 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKG-RKETGITALDPR 55 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHH-HHHhhccccccc
Confidence 3799999999999999999999998877544432 555555544 566788877763
No 447
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.74 E-value=3.5e-05 Score=84.99 Aligned_cols=67 Identities=22% Similarity=0.331 Sum_probs=56.2
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF 607 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i 607 (691)
++-++++-.|.. ...+++++ +++.+||+++|+|++|+|||||++.|+|..+|+.|.|.+.|..-++.
T Consensus 131 ~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev 197 (432)
T PRK06793 131 FEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREV 197 (432)
T ss_pred hheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccH
Confidence 556666666753 34578885 99999999999999999999999999999999999999988765544
No 448
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.72 E-value=6.1e-05 Score=81.35 Aligned_cols=94 Identities=26% Similarity=0.367 Sum_probs=64.5
Q ss_pred cccceeEEEe-----CCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCC-cccc
Q 005561 555 ILNGLNLTLK-----SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPV-LFSV 628 (691)
Q Consensus 555 vL~~IsL~I~-----~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~-LF~g 628 (691)
.+.++.|++. .||.++++||+|-||||++++|+|..+|++|+ ..++ .|+|=||-.. -|+|
T Consensus 351 ~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~----------~vSyKPQyI~~~~~g 416 (591)
T COG1245 351 TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL----------KVSYKPQYISPDYDG 416 (591)
T ss_pred ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc----------eEeecceeecCCCCC
Confidence 4556677655 57889999999999999999999999999998 3322 4888888653 3899
Q ss_pred cHHHHHhcCCCCCCCCHHH-HHHHHHHcCcHHHHhc
Q 005561 629 SVGENIAYGLPDENVSKDD-IIKAAKAANAHDFIIS 663 (691)
Q Consensus 629 TIreNI~lG~p~~~~sdee-I~~Al~~A~l~dfI~~ 663 (691)
||++=+.-..++. +.+.- -.+.++--++++.+++
T Consensus 417 tV~~~l~~~~~~~-~~~s~~~~ei~~pl~l~~i~e~ 451 (591)
T COG1245 417 TVEDLLRSAIRSA-FGSSYFKTEIVKPLNLEDLLER 451 (591)
T ss_pred cHHHHHHHhhhhh-cccchhHHhhcCccchHHHHhc
Confidence 9999876433321 11111 1244555556555543
No 449
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.72 E-value=3.1e-05 Score=77.29 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=46.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCc
Q 005561 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVL 625 (691)
Q Consensus 568 ~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~L 625 (691)
+++|+|+.|||||||++.+.+.+.+..| +.+-..|.......++.+..++++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 6899999999999999999999887655 55555677666667777788999998765
No 450
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.71 E-value=1.9e-05 Score=86.88 Aligned_cols=54 Identities=30% Similarity=0.366 Sum_probs=47.8
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC
Q 005561 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD 608 (691)
Q Consensus 554 ~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~ 608 (691)
.+++ .++++.+||+++|+|+||+|||||++.|++..+|+.|.|.+.|..-+++.
T Consensus 129 ~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~ 182 (418)
T TIGR03498 129 RVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREVR 182 (418)
T ss_pred EEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechHHH
Confidence 4565 69999999999999999999999999999999999999998887655443
No 451
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.71 E-value=3.1e-05 Score=85.43 Aligned_cols=55 Identities=27% Similarity=0.356 Sum_probs=50.2
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD 608 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~ 608 (691)
..+++++ +++.+|++++|+|+||+|||||++.|++..+++.+.|...|..-++..
T Consensus 145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~ 199 (434)
T PRK08472 145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIP 199 (434)
T ss_pred hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHH
Confidence 3579999 999999999999999999999999999999999999999998776654
No 452
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.71 E-value=2.2e-05 Score=87.21 Aligned_cols=53 Identities=36% Similarity=0.483 Sum_probs=47.0
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCC
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRT 606 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~ 606 (691)
..+++++ ++|.+||+++|+|+||+|||||++.|+|..+++.|.|...|..-++
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~e 203 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGRE 203 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchH
Confidence 4689999 9999999999999999999999999999999999888776654444
No 453
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.70 E-value=5.6e-05 Score=95.41 Aligned_cols=40 Identities=30% Similarity=0.503 Sum_probs=36.1
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHH
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQ 584 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~ 584 (691)
.++++|++. ..|+|+|++|++||.++|+|+||||||||++
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 588888752 2699999999999999999999999999999
No 454
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.69 E-value=4.7e-05 Score=80.06 Aligned_cols=45 Identities=20% Similarity=0.290 Sum_probs=35.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhcCC--CCCCeEEECCccCCCCChHHh
Q 005561 568 VTALVGSSGAGKSTIVQLLARFYE--PTGGRITVGGEDLRTFDKSEW 612 (691)
Q Consensus 568 ~vAIVG~SGSGKSTLl~LL~gly~--p~~G~I~IdG~di~~i~~~~l 612 (691)
.+||.|++||||||+++.|.++.. |.+|+|.+-+.|--..+.+.+
T Consensus 64 IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l 110 (290)
T TIGR00554 64 IISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVL 110 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHH
Confidence 799999999999999999999998 778887776655444444433
No 455
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.69 E-value=2.6e-05 Score=78.85 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=50.9
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCcc-cccHH
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLF-SVSVG 631 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF-~gTIr 631 (691)
..+.+|+++++++ +.++|+||+||||||+++.+.+..-. |+ .|. .. ...+..++++.| +| +-+++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~---~v--p~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGS---FV--PASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCC---ee--ccccceecceee---EeccCCch
Confidence 3578899999887 99999999999999999999864421 11 111 11 122356788876 34 44789
Q ss_pred HHHhcCC
Q 005561 632 ENIAYGL 638 (691)
Q Consensus 632 eNI~lG~ 638 (691)
||+..|.
T Consensus 84 ~~ls~g~ 90 (216)
T cd03284 84 DDLAGGR 90 (216)
T ss_pred hhhccCc
Confidence 9998773
No 456
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.65 E-value=3.5e-05 Score=83.56 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=40.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhcCCCC---CCeEEECCccCCCCChHHhhhc
Q 005561 568 VTALVGSSGAGKSTIVQLLARFYEPT---GGRITVGGEDLRTFDKSEWARV 615 (691)
Q Consensus 568 ~vAIVG~SGSGKSTLl~LL~gly~p~---~G~I~IdG~di~~i~~~~lR~~ 615 (691)
.|||.|++|||||||++.|.++.++. .|.|.+||..+..-....+++.
T Consensus 214 IIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~ 264 (460)
T PLN03046 214 VIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRER 264 (460)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhh
Confidence 68999999999999999999999776 7899999998765555556554
No 457
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.64 E-value=9e-05 Score=75.15 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=23.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhcCCC
Q 005561 568 VTALVGSSGAGKSTIVQLLARFYEP 592 (691)
Q Consensus 568 ~vAIVG~SGSGKSTLl~LL~gly~p 592 (691)
.+||.|+|||||||+++.|.+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 3799999999999999999999975
No 458
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.64 E-value=5.2e-05 Score=80.11 Aligned_cols=79 Identities=28% Similarity=0.395 Sum_probs=54.0
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEE---CCccCCCCChHHhhh-ceEEEeccCCc-----c
Q 005561 556 LNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV---GGEDLRTFDKSEWAR-VVSIVNQEPVL-----F 626 (691)
Q Consensus 556 L~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~I---dG~di~~i~~~~lR~-~Ia~V~Qd~~L-----F 626 (691)
++.+...++ |++++++|+||+|||||+|.|+|...+..|+|.. .|..... +...++- ..+++.+.|-+ .
T Consensus 152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~-~~~~~~~~~~~~liDtPG~~~~~~~ 229 (287)
T cd01854 152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTT-HRELFPLPGGGLLIDTPGFREFGLL 229 (287)
T ss_pred HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccc-eEEEEEcCCCCEEEECCCCCccCCc
Confidence 445555555 5999999999999999999999999999999976 2332221 1122222 26788888876 2
Q ss_pred cccHHHHHhc
Q 005561 627 SVSVGENIAY 636 (691)
Q Consensus 627 ~gTIreNI~l 636 (691)
..+..|...+
T Consensus 230 ~~~~~~~~~~ 239 (287)
T cd01854 230 HIDPEELAHY 239 (287)
T ss_pred cCCHHHHHHH
Confidence 3455555543
No 459
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.60 E-value=6e-05 Score=75.50 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=34.0
Q ss_pred CcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHh
Q 005561 552 DVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLAR 588 (691)
Q Consensus 552 ~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~g 588 (691)
+..+.+|+++++++|+.++|.|||||||||+++.+.+
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999999999999999973
No 460
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.59 E-value=9e-05 Score=89.40 Aligned_cols=43 Identities=26% Similarity=0.343 Sum_probs=37.5
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA 587 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~ 587 (691)
.|+++|++. ..|+|+|++|++||.++|+|.||||||||++-++
T Consensus 614 ~L~v~~l~~--------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 614 FLKLKGARE--------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred eEEecCCcc--------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 488888851 2499999999999999999999999999998654
No 461
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.59 E-value=5.1e-05 Score=83.60 Aligned_cols=66 Identities=29% Similarity=0.372 Sum_probs=52.4
Q ss_pred EEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCC
Q 005561 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTF 607 (691)
Q Consensus 539 ~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i 607 (691)
+-+.++-.|.. +..+++++ +++.+||+++|+|++|+|||||++.|+++.+|+.|.+...|..-+++
T Consensus 113 ~R~~~~~~~~t--Gi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer~~ev 178 (411)
T TIGR03496 113 KRAPIDEPLDV--GVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERGREV 178 (411)
T ss_pred hccCcceEeee--eEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecChHHH
Confidence 33444445542 35688888 99999999999999999999999999999999988887777654443
No 462
>PRK14530 adenylate kinase; Provisional
Probab=97.55 E-value=7e-05 Score=75.63 Aligned_cols=72 Identities=21% Similarity=0.140 Sum_probs=44.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhcCCC---CCCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHHhcCCCCCC
Q 005561 566 GSVTALVGSSGAGKSTIVQLLARFYEP---TGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEN 642 (691)
Q Consensus 566 Ge~vAIVG~SGSGKSTLl~LL~gly~p---~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~lG~p~~~ 642 (691)
|.++.|+|++||||||+++.|++.|.. +.|++ +|+.+..-.++..--.+++++|+..|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~--------------lr~~~~~~~~~~~~~~~~~~~~~~~g~~--- 65 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDA--------------LRANKQMDISDMDTEYDTPGEYMDAGEL--- 65 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHH--------------HHHhccCCcccccchHHHHHHHHHcCCC---
Confidence 568999999999999999999998854 22222 2332221112222123678999988853
Q ss_pred CCHHHHHHHHHH
Q 005561 643 VSKDDIIKAAKA 654 (691)
Q Consensus 643 ~sdeeI~~Al~~ 654 (691)
.+++.+.+.++.
T Consensus 66 ~~d~~~~~~l~~ 77 (215)
T PRK14530 66 VPDAVVNEIVEE 77 (215)
T ss_pred CCHHHHHHHHHH
Confidence 345555544443
No 463
>PRK00098 GTPase RsgA; Reviewed
Probab=97.55 E-value=0.00016 Score=76.91 Aligned_cols=60 Identities=33% Similarity=0.401 Sum_probs=44.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEE---CCccCCCCChHHh--hhceEEEeccCCcc
Q 005561 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV---GGEDLRTFDKSEW--ARVVSIVNQEPVLF 626 (691)
Q Consensus 565 ~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~I---dG~di~~i~~~~l--R~~Ia~V~Qd~~LF 626 (691)
+|++++++|+||+|||||+|.|+|...+..|+|.. .|.....- ..+ ....+++-..|-+.
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~--~~~~~~~~~~~~~DtpG~~ 227 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTH--VELYDLPGGGLLIDTPGFS 227 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCccccc--EEEEEcCCCcEEEECCCcC
Confidence 59999999999999999999999999999999986 34322211 111 12356777777665
No 464
>PTZ00035 Rad51 protein; Provisional
Probab=97.54 E-value=0.00011 Score=79.32 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=59.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHhcCC-C-----CCCeE-EECCccCCCCChHHhhhceEEEeccCCcccccHHHHH
Q 005561 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYE-P-----TGGRI-TVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENI 634 (691)
Q Consensus 562 ~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-p-----~~G~I-~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI 634 (691)
=|++|+.+.|+|++|||||||+..++...+ | .+|.+ +||+.+. ++.+.+ ..+.|..-+...++.+||
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~eri----~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPERI----VQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHHH----HHHHHHhCCChHhHhhce
Confidence 478999999999999999999999987665 4 45666 8888743 444433 333566666777899999
Q ss_pred hcCCCCCCCCHHHHHHHH
Q 005561 635 AYGLPDENVSKDDIIKAA 652 (691)
Q Consensus 635 ~lG~p~~~~sdeeI~~Al 652 (691)
.+.++. +.++..+.+
T Consensus 188 ~~~~~~---~~e~~~~~l 202 (337)
T PTZ00035 188 AYARAY---NHEHQMQLL 202 (337)
T ss_pred EEEccC---CHHHHHHHH
Confidence 988653 445554444
No 465
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.53 E-value=0.0002 Score=77.28 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=57.9
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEE-eccCCcc-cccHHHH----H
Q 005561 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIV-NQEPVLF-SVSVGEN----I 634 (691)
Q Consensus 561 L~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V-~Qd~~LF-~gTIreN----I 634 (691)
.-++++..+.|+|++||||||+++.|+++.++.++.|.|.+.. ++.... ..++.+. .++..-. .-|..+. +
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~--El~l~~-~~~v~l~~~~~~~~~~~~t~~~ll~~~L 233 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTL--ELVIPH-ENHVRLLYSKNGAGLGAVTAEHLLQASL 233 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCc--cccCCC-CCEEEEEeeccccCcCccCHHHHHHHHh
Confidence 3477899999999999999999999999999999999887753 333221 2233332 2211101 1133333 3
Q ss_pred hcCCCCC----CCCHHHHHHHHHHc
Q 005561 635 AYGLPDE----NVSKDDIIKAAKAA 655 (691)
Q Consensus 635 ~lG~p~~----~~sdeeI~~Al~~A 655 (691)
++ +||. ++.++|.+++++.+
T Consensus 234 R~-~pD~IivGEiR~~ea~~~l~a~ 257 (344)
T PRK13851 234 RM-RPDRILLGEMRDDAAWAYLSEV 257 (344)
T ss_pred cC-CCCeEEEEeeCcHHHHHHHHHH
Confidence 33 3441 45667777777765
No 466
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.52 E-value=8.8e-05 Score=93.73 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=45.8
Q ss_pred EEEEeeEEECCCCCCcccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECC
Q 005561 538 ICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG 601 (691)
.+.+++++.|.. ...|+||||+|++||.++|+|+||||||||+..+ +|. +|++.++.
T Consensus 936 l~~~~i~i~~~~---~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~e 992 (1809)
T PRK00635 936 PVPADITIKNAY---QHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYAE 992 (1809)
T ss_pred cccceEEEeccc---cccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeeec
Confidence 456677777642 2469999999999999999999999999988777 554 89997543
No 467
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.50 E-value=0.00011 Score=73.84 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=36.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcCCCC------------CCeEEECCccCCCCChHHhhhc
Q 005561 565 SGSVTALVGSSGAGKSTIVQLLARFYEPT------------GGRITVGGEDLRTFDKSEWARV 615 (691)
Q Consensus 565 ~Ge~vAIVG~SGSGKSTLl~LL~gly~p~------------~G~I~IdG~di~~i~~~~lR~~ 615 (691)
.|..+.|+||||||||||++.|.....+. .| .+||.+..-++.++..+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~--e~~g~~y~fv~~~~f~~~ 72 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPG--EIDGVDYHFVTPEEFREM 72 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCC--CCCCCeeeeCCHHHHHHH
Confidence 57899999999999999999998654322 12 267887777777776544
No 468
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.49 E-value=9.4e-05 Score=75.01 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=42.8
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHh-cCCCCCCeEEEC
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLAR-FYEPTGGRITVG 600 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~g-ly~p~~G~I~Id 600 (691)
..+.+|+++++++|++++|.||+|+||||+++.+++ .+.++.|.....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 468899999999999999999999999999999999 777888875543
No 469
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.48 E-value=5.1e-05 Score=73.21 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=42.4
Q ss_pred ECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhh-ceEEEeccCCc-ccccHHHHHhcC
Q 005561 572 VGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR-VVSIVNQEPVL-FSVSVGENIAYG 637 (691)
Q Consensus 572 VG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~-~Ia~V~Qd~~L-F~gTIreNI~lG 637 (691)
+|+|||||||+++.|.+.+ |.+.+||-.+. .....|+ ..++++|+.-. ...+..+|.++.
T Consensus 1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 62 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLH--PRRNIEKMASGEPLNDDDRKPWLQALNDAAFA 62 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----CCeEEeCccCC--chhhhccccCCCCCChhhHHHHHHHHHHHHHH
Confidence 5999999999999999887 78999994332 2223443 46788888543 345677777653
No 470
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.46 E-value=6.5e-05 Score=73.27 Aligned_cols=43 Identities=30% Similarity=0.448 Sum_probs=36.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHhcCC-CCCCeEEECCccCC
Q 005561 563 LKSGSVTALVGSSGAGKSTIVQLLARFYE-PTGGRITVGGEDLR 605 (691)
Q Consensus 563 I~~Ge~vAIVG~SGSGKSTLl~LL~gly~-p~~G~I~IdG~di~ 605 (691)
.++|..+.++|++||||||+++.|.+.+. +..|.+.+||.+++
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 46899999999999999999999987664 66788999886554
No 471
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.45 E-value=0.00015 Score=72.28 Aligned_cols=35 Identities=31% Similarity=0.389 Sum_probs=31.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCc
Q 005561 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE 602 (691)
Q Consensus 568 ~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~ 602 (691)
+++|+|++|+|||||+|.|+|...+.+|.+..+..
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~ 37 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVV 37 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccCcc
Confidence 58999999999999999999999988898887743
No 472
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.45 E-value=0.00013 Score=70.30 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=35.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhc----CCCCCC----eEEECCccCC
Q 005561 566 GSVTALVGSSGAGKSTIVQLLARF----YEPTGG----RITVGGEDLR 605 (691)
Q Consensus 566 Ge~vAIVG~SGSGKSTLl~LL~gl----y~p~~G----~I~IdG~di~ 605 (691)
.-+++|+|++|||||||++.+.+. +.|+.| .+.++|.++.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~ 61 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLN 61 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEE
Confidence 347999999999999999999997 789999 8888887663
No 473
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.44 E-value=6.1e-05 Score=74.05 Aligned_cols=50 Identities=28% Similarity=0.506 Sum_probs=40.7
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHHh--------cCCCCCCeEEECCccCC
Q 005561 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLAR--------FYEPTGGRITVGGEDLR 605 (691)
Q Consensus 555 vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~g--------ly~p~~G~I~IdG~di~ 605 (691)
+|+++++..+++ +++|+|++|||||||++-+.+ -..|..|++.++|.++.
T Consensus 9 ~~~~~~~~~~~~-ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~ 66 (190)
T cd00879 9 VLSSLGLYNKEA-KILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFK 66 (190)
T ss_pred HHHHhhcccCCC-EEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEE
Confidence 588889886665 459999999999999999997 45566788888887643
No 474
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.42 E-value=0.00013 Score=69.84 Aligned_cols=34 Identities=32% Similarity=0.560 Sum_probs=24.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEE
Q 005561 565 SGSVTALVGSSGAGKSTIVQLLARFYEPTGGRIT 598 (691)
Q Consensus 565 ~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~ 598 (691)
+|++++++|+||+|||||+|.|.+-.+-..|+|.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 4599999999999999999999997766666654
No 475
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.42 E-value=0.00025 Score=72.44 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=53.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHhc-CCCC------CCeEEECCccCCCCChHHhhh---ceEEEeccCCcccccHHH
Q 005561 563 LKSGSVTALVGSSGAGKSTIVQLLARF-YEPT------GGRITVGGEDLRTFDKSEWAR---VVSIVNQEPVLFSVSVGE 632 (691)
Q Consensus 563 I~~Ge~vAIVG~SGSGKSTLl~LL~gl-y~p~------~G~I~IdG~di~~i~~~~lR~---~Ia~V~Qd~~LF~gTIre 632 (691)
|++|+.+.|+|++||||||++.-++.. ..|. ++.|+||+.+ ..+.+.+++ +.++ ...++.+
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~~~~~~-------~~~~~~~ 86 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIAERFGL-------DPEEVLD 86 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHHHHhcc-------ChHhHhc
Confidence 789999999999999999999988633 3343 7899999876 344444433 3333 2246778
Q ss_pred HHhcCCCCCCCCHHHHHHHH
Q 005561 633 NIAYGLPDENVSKDDIIKAA 652 (691)
Q Consensus 633 NI~lG~p~~~~sdeeI~~Al 652 (691)
||.+.++. +.+++.+.+
T Consensus 87 ~i~~~~~~---~~~~l~~~l 103 (235)
T cd01123 87 NIYVARAY---NSDHQLQLL 103 (235)
T ss_pred CEEEEecC---CHHHHHHHH
Confidence 88876542 445554443
No 476
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.41 E-value=0.00014 Score=80.08 Aligned_cols=46 Identities=30% Similarity=0.424 Sum_probs=39.2
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCc
Q 005561 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE 602 (691)
Q Consensus 554 ~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~ 602 (691)
.+++.+ +++.+||+++|+|+||+|||||++.|+|..+++ .+.+.++
T Consensus 151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d--v~Vi~lI 196 (444)
T PRK08972 151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD--VIVVGLV 196 (444)
T ss_pred eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC--EEEEEEE
Confidence 467777 999999999999999999999999999998874 4555444
No 477
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.39 E-value=0.00016 Score=72.31 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=25.7
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHH
Q 005561 560 NLTLKSGSVTALVGSSGAGKSTIVQLLA 587 (691)
Q Consensus 560 sL~I~~Ge~vAIVG~SGSGKSTLl~LL~ 587 (691)
++++.+|++++|+|++||||||+++.+.
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHH
Confidence 5666689999999999999999999999
No 478
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.39 E-value=0.00019 Score=69.68 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=33.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcCCCCC---CeEEECCc--cCCC
Q 005561 567 SVTALVGSSGAGKSTIVQLLARFYEPTG---GRITVGGE--DLRT 606 (691)
Q Consensus 567 e~vAIVG~SGSGKSTLl~LL~gly~p~~---G~I~IdG~--di~~ 606 (691)
..++|||+||||||||++-|.+...+.. |.|..++. ++..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~~~~~d~ 51 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDK 51 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCCCcccCC
Confidence 3789999999999999999998887654 89998766 4443
No 479
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.38 E-value=0.00011 Score=71.56 Aligned_cols=40 Identities=33% Similarity=0.491 Sum_probs=33.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEE-ECCcc
Q 005561 564 KSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRIT-VGGED 603 (691)
Q Consensus 564 ~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~-IdG~d 603 (691)
++|+.++|+|.+||||||+++.|.+.+.+..+.+. +|+-+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 57999999999999999999999999876665554 77743
No 480
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.38 E-value=8.1e-05 Score=73.19 Aligned_cols=44 Identities=36% Similarity=0.517 Sum_probs=36.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCC-CeEEECCccCC
Q 005561 562 TLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG-GRITVGGEDLR 605 (691)
Q Consensus 562 ~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~-G~I~IdG~di~ 605 (691)
..++|+.+.++|.+||||||+++.|.+.+.... +.+.+||.+++
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 447899999999999999999999999986433 36889987765
No 481
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.38 E-value=0.00012 Score=76.16 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=47.3
Q ss_pred cEEEEeeEEECCCCCCcccccceeEEEeC-------CCEEEEECCCCCcHHHHHHHHHhcCCC---CCCeEEECCc
Q 005561 537 DICLEDVYFSYPLRPDVVILNGLNLTLKS-------GSVTALVGSSGAGKSTIVQLLARFYEP---TGGRITVGGE 602 (691)
Q Consensus 537 ~I~f~nVsF~Y~~~~~~~vL~~IsL~I~~-------Ge~vAIVG~SGSGKSTLl~LL~gly~p---~~G~I~IdG~ 602 (691)
.++|+++++.|.. .-..+++++++.+++ |++++++|++|+||||+++.|++.+.. .-|-|..|+.
T Consensus 40 ~i~f~~~~~~~~~-vl~~v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ 114 (270)
T PRK06731 40 KVKFENATMITEE-VIEYILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 114 (270)
T ss_pred eEEecCCCccccH-HHHHHhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4777777777642 113467788887764 589999999999999999999988753 3344555654
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.37 E-value=0.00014 Score=72.43 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=25.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECC
Q 005561 568 VTALVGSSGAGKSTIVQLLARFYEPTGGRITVGG 601 (691)
Q Consensus 568 ~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG 601 (691)
.++|+|+|||||||+++.|.+++ ..|.+.+-+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~ 32 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS 32 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE
Confidence 37999999999999999999988 334444333
No 483
>PRK06820 type III secretion system ATPase; Validated
Probab=97.36 E-value=0.0002 Score=79.29 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=42.3
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCc
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE 602 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~ 602 (691)
..+++++ +++.+||+++|+|++|+|||||++.|++..+|+.+.+-.-|.
T Consensus 151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGe 199 (440)
T PRK06820 151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGE 199 (440)
T ss_pred Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEcc
Confidence 4689999 999999999999999999999999999999988755433343
No 484
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.35 E-value=0.00019 Score=72.79 Aligned_cols=84 Identities=19% Similarity=0.299 Sum_probs=58.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHhcC-CCC------CCeEEECCccCCCCChHHhhhceEEEeccCCcccccHHHHH
Q 005561 562 TLKSGSVTALVGSSGAGKSTIVQLLARFY-EPT------GGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENI 634 (691)
Q Consensus 562 ~I~~Ge~vAIVG~SGSGKSTLl~LL~gly-~p~------~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI 634 (691)
=+++|+.+.|+|++||||||++.-++... .+. .+.++||+.+ .++.+.+++...-..|+ ..++.+|+
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~--~~~~~rl~~~~~~~~~~----~~~~~~~i 88 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG--AFRPERLVQLAVRFGLD----PEEVLDNI 88 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC--CCCHHHHHHHHHHhccc----hhhhhccE
Confidence 37889999999999999999999888654 444 6789999864 45566666544333444 34677888
Q ss_pred hcCCCCCCCCHHHHHHHHHH
Q 005561 635 AYGLPDENVSKDDIIKAAKA 654 (691)
Q Consensus 635 ~lG~p~~~~sdeeI~~Al~~ 654 (691)
.+-.+. +.+++.+.++.
T Consensus 89 ~~~~~~---~~~~~~~~l~~ 105 (226)
T cd01393 89 YVARPY---NGEQQLEIVEE 105 (226)
T ss_pred EEEeCC---CHHHHHHHHHH
Confidence 776542 45555555443
No 485
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.33 E-value=0.00015 Score=82.02 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=52.1
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCC
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFD 608 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~ 608 (691)
..+.+++++.+..|+.+.++|++|+||||+++.+.++++|.+|++.+++..+.++.
T Consensus 198 ~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 198 QHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred HHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 45789999999999999999999999999999999999999999999998887654
No 486
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.30 E-value=0.00024 Score=78.40 Aligned_cols=41 Identities=34% Similarity=0.487 Sum_probs=38.1
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCC
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTG 594 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~ 594 (691)
..+++++ +++.+||+++|+|+||+|||||++.|++..+++-
T Consensus 150 i~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv 190 (439)
T PRK06936 150 VRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDV 190 (439)
T ss_pred cceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCE
Confidence 3579999 9999999999999999999999999999999863
No 487
>PRK07429 phosphoribulokinase; Provisional
Probab=97.28 E-value=0.00028 Score=75.72 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=40.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhcCCCCCCe-EEECCccCCCCChHHhhhceEEEeccCC
Q 005561 568 VTALVGSSGAGKSTIVQLLARFYEPTGGR-ITVGGEDLRTFDKSEWARVVSIVNQEPV 624 (691)
Q Consensus 568 ~vAIVG~SGSGKSTLl~LL~gly~p~~G~-I~IdG~di~~i~~~~lR~~Ia~V~Qd~~ 624 (691)
.++|.|+|||||||+++.|.+.+.+..+. |..|+. ..++ ...|+.+++.+++|.
T Consensus 10 IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~--~~~~-~~~r~~~g~~~l~p~ 64 (327)
T PRK07429 10 LLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY--HSYD-RKQRKELGITALDPR 64 (327)
T ss_pred EEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc--ccCC-HHHHHhcCCcccCcc
Confidence 78999999999999999999999988654 455553 3443 344677777777653
No 488
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.00021 Score=77.67 Aligned_cols=42 Identities=31% Similarity=0.397 Sum_probs=35.6
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCC
Q 005561 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG 595 (691)
Q Consensus 554 ~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G 595 (691)
+++++.++.+++|+.+++|||+|+||||++.-|++.+....|
T Consensus 125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G 166 (374)
T PRK14722 125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFG 166 (374)
T ss_pred hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 467788889999999999999999999999999987643333
No 489
>PLN02165 adenylate isopentenyltransferase
Probab=97.24 E-value=0.00028 Score=75.14 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=38.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHhcCC---CCCCeE-EECCccCCCCC
Q 005561 564 KSGSVTALVGSSGAGKSTIVQLLARFYE---PTGGRI-TVGGEDLRTFD 608 (691)
Q Consensus 564 ~~Ge~vAIVG~SGSGKSTLl~LL~gly~---p~~G~I-~IdG~di~~i~ 608 (691)
++|+.++|+||+|||||||+..|++.+. .+.+++ .++|.||....
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTak 89 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQ 89 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCC
Confidence 4688999999999999999999999976 566777 56888886554
No 490
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.23 E-value=0.00032 Score=70.92 Aligned_cols=54 Identities=28% Similarity=0.305 Sum_probs=37.9
Q ss_pred EEEEECCCCCcHHHHHHHHH---hcCCCCCCeEE--------ECCccCCCC-ChHHhhhceEEEec
Q 005561 568 VTALVGSSGAGKSTIVQLLA---RFYEPTGGRIT--------VGGEDLRTF-DKSEWARVVSIVNQ 621 (691)
Q Consensus 568 ~vAIVG~SGSGKSTLl~LL~---gly~p~~G~I~--------IdG~di~~i-~~~~lR~~Ia~V~Q 621 (691)
.++|.|++||||||+++.|+ |+.-+++|.+. .+|.++.+- ....+++++++..|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFI 69 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEe
Confidence 58999999999999999999 55558889774 566665321 12344555655554
No 491
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.00021 Score=83.59 Aligned_cols=51 Identities=31% Similarity=0.392 Sum_probs=41.0
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCC--eEEECCccCC
Q 005561 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGG--RITVGGEDLR 605 (691)
Q Consensus 555 vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G--~I~IdG~di~ 605 (691)
++++.++.+++|+.+++|||+|+||||.+.-|++.|...+| .|.+-..|..
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~ 226 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSF 226 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCccc
Confidence 45666777888999999999999999999999999876666 5666555543
No 492
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=97.21 E-value=0.00079 Score=72.69 Aligned_cols=90 Identities=18% Similarity=0.296 Sum_probs=61.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCccCCCCChHHhhhceEEEeccCCc-------ccccHHHHHh
Q 005561 563 LKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVL-------FSVSVGENIA 635 (691)
Q Consensus 563 I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd~~L-------F~gTIreNI~ 635 (691)
++.+..+.|+|++||||||+++.|+++.+|.++.|.|.+. .++... ..+.+.+..+.... +..=++..++
T Consensus 175 v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~--~El~~~-~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR 251 (340)
T TIGR03819 175 VAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDA--AELRPD-HPHVVRLEARPANVEGAGAVTLTDLVRQALR 251 (340)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCc--ceecCC-CCCeeeEEeccccccCcCccCHHHHHHHHhc
Confidence 5678999999999999999999999999999999999875 344432 23456666544322 2222444444
Q ss_pred cCCCC----CCCCHHHHHHHHHHcC
Q 005561 636 YGLPD----ENVSKDDIIKAAKAAN 656 (691)
Q Consensus 636 lG~p~----~~~sdeeI~~Al~~A~ 656 (691)
+ +|| .++.+.|.+++++.++
T Consensus 252 ~-~PD~IivGEiRg~Ea~~~l~a~~ 275 (340)
T TIGR03819 252 M-RPDRIVVGEVRGAEVVDLLAALN 275 (340)
T ss_pred c-CCCeEEEeCcCcHHHHHHHHHHH
Confidence 4 244 2466677777666543
No 493
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.15 E-value=0.00017 Score=75.18 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=40.0
Q ss_pred EECCCCCCcccccceeEEEeCCC-EEEEECCCCCcHHHHHHHHHhcCCCC
Q 005561 545 FSYPLRPDVVILNGLNLTLKSGS-VTALVGSSGAGKSTIVQLLARFYEPT 593 (691)
Q Consensus 545 F~Y~~~~~~~vL~~IsL~I~~Ge-~vAIVG~SGSGKSTLl~LL~gly~p~ 593 (691)
|-|++.....+++.++..+++|+ .+.|+|++|+||||+++.+.+.+++.
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~ 70 (269)
T TIGR03015 21 FFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE 70 (269)
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC
Confidence 44664444568889988888866 89999999999999999999988753
No 494
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.14 E-value=0.00039 Score=78.52 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=36.7
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcC---CCCCCeEE
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFY---EPTGGRIT 598 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly---~p~~G~I~ 598 (691)
...++|+-+.+ +|..+||.|+|||||||+++.|+..+ -.++|.+.
T Consensus 272 ~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~Y 319 (512)
T PRK13477 272 TRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMY 319 (512)
T ss_pred eEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCcee
Confidence 45799999987 88999999999999999999999444 44445443
No 495
>PRK09183 transposase/IS protein; Provisional
Probab=97.13 E-value=0.00022 Score=74.12 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=44.8
Q ss_pred EEEEeeEEECCCCCCc---ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEE
Q 005561 538 ICLEDVYFSYPLRPDV---VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITV 599 (691)
Q Consensus 538 I~f~nVsF~Y~~~~~~---~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~I 599 (691)
-.+++..|++....+. ..|.++++ +++|+.+.|+||+|+|||+|++.|..........+.+
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~ 135 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRF 135 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 3566677776532222 24777888 9999999999999999999999997665544446654
No 496
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.00047 Score=68.05 Aligned_cols=50 Identities=26% Similarity=0.328 Sum_probs=39.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhcCC------------CCCCeEEECCccCCCCChHHhhhce
Q 005561 565 SGSVTALVGSSGAGKSTIVQLLARFYE------------PTGGRITVGGEDLRTFDKSEWARVV 616 (691)
Q Consensus 565 ~Ge~vAIVG~SGSGKSTLl~LL~gly~------------p~~G~I~IdG~di~~i~~~~lR~~I 616 (691)
+|..+.|+||||||||||++.|+.-++ |..|++ ||+|..-++.++..+.|
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~--~G~dY~fvs~~~F~~~i 64 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE--EGKTYFFLTIEEFKKGI 64 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC--CCceeEeCCHHHHHHHH
Confidence 578899999999999999999987653 233544 88888888888776654
No 497
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.11 E-value=0.00024 Score=75.92 Aligned_cols=89 Identities=21% Similarity=0.319 Sum_probs=60.0
Q ss_pred ccc-eeEEEeCCCEEEEECCCCCcHHHHHHHHHh--cCCCCCC----e-EEECCccCCCCChHHhhhceEEEeccCCccc
Q 005561 556 LNG-LNLTLKSGSVTALVGSSGAGKSTIVQLLAR--FYEPTGG----R-ITVGGEDLRTFDKSEWARVVSIVNQEPVLFS 627 (691)
Q Consensus 556 L~~-IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~g--ly~p~~G----~-I~IdG~di~~i~~~~lR~~Ia~V~Qd~~LF~ 627 (691)
|+. +.==+++|+.+.|.|++|+|||||+.-++. ..+++.| . ++||+.+. ++.+. +..+.|..-+..
T Consensus 85 lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~--f~~~R----l~~ia~~~~~~~ 158 (316)
T TIGR02239 85 LDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT--FRPER----LLAIAERYGLNP 158 (316)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC--CCHHH----HHHHHHHcCCCh
Confidence 444 233588999999999999999999998886 3445443 4 99999754 44432 233345555666
Q ss_pred ccHHHHHhcCCCCCCCCHHHHHHHHH
Q 005561 628 VSVGENIAYGLPDENVSKDDIIKAAK 653 (691)
Q Consensus 628 gTIreNI~lG~p~~~~sdeeI~~Al~ 653 (691)
.++.+||.+.+. .+-++..+.++
T Consensus 159 ~~~l~~i~~~~~---~~~~~~~~~l~ 181 (316)
T TIGR02239 159 EDVLDNVAYARA---YNTDHQLQLLQ 181 (316)
T ss_pred HHhhccEEEEec---CChHHHHHHHH
Confidence 789999988754 34455444444
No 498
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.10 E-value=0.00042 Score=69.07 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=41.7
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHHhcCCCCCCeEEECCc---cCCCCChHHhhhceEEEeccCCccc
Q 005561 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGE---DLRTFDKSEWARVVSIVNQEPVLFS 627 (691)
Q Consensus 557 ~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~gly~p~~G~I~IdG~---di~~i~~~~lR~~Ia~V~Qd~~LF~ 627 (691)
+++++++.+| ..+|+|++|||||||+..|.-......+ ....|. ++-... .-...|.++.|+.-++.
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~ 82 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA 82 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCC--CCeEEEEEEEEcCCccC
Confidence 5566777776 7799999999999999999754432221 111122 111111 12456888888876665
No 499
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.09 E-value=0.00054 Score=69.59 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=32.3
Q ss_pred cccccceeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q 005561 553 VVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLA 587 (691)
Q Consensus 553 ~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLl~LL~ 587 (691)
..+.+|+++++++|+.++|.||+||||||+++.+.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 46899999999999999999999999999999864
No 500
>PRK09087 hypothetical protein; Validated
Probab=97.08 E-value=0.00036 Score=71.10 Aligned_cols=64 Identities=22% Similarity=0.436 Sum_probs=48.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHH-----hcCCC-----------CCCeEEECCccCCCCChHHhhhceEEEecc--CCcc
Q 005561 565 SGSVTALVGSSGAGKSTIVQLLA-----RFYEP-----------TGGRITVGGEDLRTFDKSEWARVVSIVNQE--PVLF 626 (691)
Q Consensus 565 ~Ge~vAIVG~SGSGKSTLl~LL~-----gly~p-----------~~G~I~IdG~di~~i~~~~lR~~Ia~V~Qd--~~LF 626 (691)
++..+.|+|++|||||+|+++++ .++++ .+|-+.||+++.-..+.+++...+-.+.|. +.++
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ili 122 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLM 122 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 35569999999999999999999 66666 457799999987666777777766666553 3455
Q ss_pred cc
Q 005561 627 SV 628 (691)
Q Consensus 627 ~g 628 (691)
.+
T Consensus 123 ts 124 (226)
T PRK09087 123 TS 124 (226)
T ss_pred EC
Confidence 44
Done!