Query 005561
Match_columns 691
No_of_seqs 231 out of 1966
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 21:39:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/005561.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_126-130//hhsearch_pdb/005561hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 587.4 57.9 470 158-673 57-549 (1321)
2 4f4c_A Multidrug resistance pr 1.0 1 1 556.8 44.3 467 161-673 739-1212(1321)
3 3g5u_A MCG1178, multidrug resi 1.0 1 1 536.1 46.5 467 161-673 33-521 (1284)
4 3qf4_B Uncharacterized ABC tra 1.0 1 1 525.2 53.4 464 160-673 22-486 (598)
5 3qf4_A ABC transporter, ATP-bi 1.0 1 1 524.0 55.2 464 162-673 10-474 (587)
6 4a82_A Cystic fibrosis transme 1.0 1 1 516.8 54.9 463 163-673 2-472 (578)
7 3b5x_A Lipid A export ATP-bind 1.0 1 1 506.0 63.3 462 162-673 12-475 (582)
8 2yl4_A ATP-binding cassette SU 1.0 1 1 505.4 62.9 466 162-672 6-477 (595)
9 3b60_A Lipid A export ATP-bind 1.0 1 1 503.8 58.8 462 162-673 12-475 (582)
10 3g5u_A MCG1178, multidrug resi 1.0 1 1 487.5 45.8 466 164-673 694-1166(1284)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=587.36 Aligned_cols=470 Identities=26% Similarity=0.353 Sum_probs=377.2
Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------C-----------C-CH----HH
Q ss_conf 9711599999999873-78999999999999997979999999999998428------9-----------9-14----89
Q 005561 158 PNLITWGLLWSLFLKH-KLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGA------R-----------P-EP----LW 214 (691)
Q Consensus 158 ~~~~~~~~l~~~~~~~-~~~l~~~ll~~l~~~i~~l~~P~~~~~iiD~i~~~------~-----------~-~~----l~ 214 (691)
.++..+..+++|..+. +..+++++++.++..+...+++++.+.++|.+... . . .. +.
T Consensus 57 ~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1321)
T 4f4c_A 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136 (1321)
T ss_dssp SSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHH
T ss_pred CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 68779999731567678999999999999999999999999999999997010001454300034431001689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999998199333604693489999995599999999853244
Q 005561 215 KLLSKVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISR 294 (691)
Q Consensus 215 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~lR~~lf~kLl~lp~~ff~~~~sG~l~srls~Dv~~i~~~~~~~i~~ 294 (691)
.....++++.++..++.++..+.+...++++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+.+.+..
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~ 216 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGM 216 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999997889899879984899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCH
Q ss_conf 57798999999999999989677999999999999999999996424999999999999998999997139999982636
Q 005561 295 DRGFRALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGE 374 (691)
Q Consensus 295 ~~~~~~i~~vi~~l~il~~~~~~Lalii~~~~l~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gI~tIKa~~~E 374 (691)
.+..+..+++.++++++++|++++++.+.+++..++..++.++..+..++..+..++..+.+.|.++||++||+|++|
T Consensus 217 --~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 294 (1321)
T 4f4c_A 217 --AFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGL 294 (1321)
T ss_dssp --HHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf --999999999999999999899999999999999999999999999999999999999999999999839999982142
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999789999988999999999999999999998798724975798999999999999999999999
Q 005561 375 KRQMLMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVN 454 (691)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~G~ltiG~lva~~~~~~~l~~pi~~l~~ 454 (691)
+.+.++|.+...+..+...+.....++......+..++..++++++|++++..|.+++|.+++++.+...+..|+..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~ 374 (1321)
T 4f4c_A 295 RYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGP 374 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999995998699999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999999999999744642203431252010000121023445431379998644320111100123555477787
Q 005561 455 TFGDLRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAW 534 (691)
Q Consensus 455 ~~~~l~~~~~s~~RI~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (691)
.+..++.+.++++|+.++++.++..+. . .+ ....+...
T Consensus 375 ~~~~~~~~~~s~~ri~~~l~~~~~~~~-----------~--~~-----------------------------~~~~~~~~ 412 (1321)
T 4f4c_A 375 QLAVLGTAQGAASGIYEVLDRKPVIDS-----------S--SK-----------------------------AGRKDMKI 412 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSSC-----------S--SS-----------------------------CCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCC-----------C--CC-----------------------------CCCCCCCC
T ss_conf 999999999999999999717853456-----------6--65-----------------------------56567788
Q ss_pred CCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHH
Q ss_conf 67689985589888999954322403897279999998799894899999997047899986889996089999577631
Q 005561 535 SGDICLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWAR 614 (691)
Q Consensus 535 ~G~I~l~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLlkLL~gly~p~~G~I~idG~di~~i~~~~lR~ 614 (691)
+|+|+|+||+|+|+++++.++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.++||+
T Consensus 413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~ 492 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRK 492 (1321)
T ss_dssp CCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHH
T ss_pred CCCEEEEEEEEECCCCCCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHH
T ss_conf 87679998554079999874333318862288278998058985778888754565164486157996501125999850
Q ss_pred CEEEEECCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHH
Q ss_conf 21888046776310289997549999999999999999982918899508853255303
Q 005561 615 VVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 615 ~Ia~V~Qd~~LF~GTIrdNI~lG~p~~~~tdeeI~~Al~~A~l~dfI~~LP~GldT~~~ 673 (691)
+||||+|||+||+|||||||+||+|+ +++|++++||+.|+++|||+.||+||||++-
T Consensus 493 ~i~~v~Q~~~Lf~~TI~eNI~~g~~~--~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vG 549 (1321)
T 4f4c_A 493 NVAVVSQEPALFNCTIEENISLGKEG--ITREEMVAACKMANAEKFIKTLPNGYNTLVG 549 (1321)
T ss_dssp HEEEECSSCCCCSEEHHHHHHTTCTT--CCHHHHHHHHHHTTCHHHHHHSTTTTSSEES
T ss_pred CCCCCCCCCEEECCCHHHHHHHHCCC--CHHHHHHHHHHHCCCHHHHHCCCCCCCCEEC
T ss_conf 46665875332078616788641552--2099999999875654688708888860755
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=556.80 Aligned_cols=467 Identities=24% Similarity=0.306 Sum_probs=352.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 159999999987378999999999999997979999999999998428991---48999999999999999999999999
Q 005561 161 ITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPE---PLWKLLSKVGLLYALEPIFTVIFVMN 237 (691)
Q Consensus 161 ~~~~~l~~~~~~~~~~l~~~ll~~l~~~i~~l~~P~~~~~iiD~i~~~~~~---~l~~~l~~~~~~~~~~~~l~~~~~~~ 237 (691)
..|+.+ .+.++.+..+++.+++..+........+++....++........ ....+...++++.++..++.++..+.
T Consensus 739 ~~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~ 817 (1321)
T 4f4c_A 739 NLFEIL-YHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFF 817 (1321)
T ss_dssp CHHHHH-HHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 099999-9987789999999999999999999999999999987517934556678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999998199333604--693489999995599999999853244577989999999999999896
Q 005561 238 MNTVWEKVMSIVKAQIFRRVLIQKAEFFDR--YKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIA 315 (691)
Q Consensus 238 ~~~~~~~v~~~lR~~lf~kLl~lp~~ff~~--~~sG~l~srls~Dv~~i~~~~~~~i~~~~~~~~i~~vi~~l~il~~~~ 315 (691)
+.....++..++|.++|++++++|++||+. +++|++++|+++|++.+++.+...+.. .+..+..+++.++++++++
T Consensus 818 ~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~--~~~~~~~~i~~~~~~~~~~ 895 (1321)
T 4f4c_A 818 MGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFST--VITTLVSMVAGIGLAFFYG 895 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHH--HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHEEEEHHHH
T ss_conf 99999999999999998887349933321678884888850250599999999999999--9998653777702213786
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77999999999999999999996424999999999999998999997139999982636999999999999999997899
Q 005561 316 PQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKL 395 (691)
Q Consensus 316 ~~Lalii~~~~l~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gI~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~ 395 (691)
|++++++.++++++.+...++.++......+..+..++....+.|+++|+++||+|++|+++.++|.+..+...+...+.
T Consensus 896 ~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~ 975 (1321)
T 4f4c_A 896 WQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKE 975 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999988899999999999999999999999888988999999627988861414889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99988999999999999999999998798724975798999--9999999999999999999999999999999999974
Q 005561 396 GTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVA--SFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSIL 473 (691)
Q Consensus 396 ~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~G~ltiG~lv--a~~~~~~~l~~pi~~l~~~~~~l~~~~~s~~RI~~il 473 (691)
.....+...+.....++..++++++|+.++..|..+.+.+. .++.+......++..+...+.+++.+..+.+|+.+++
T Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l 1055 (1321)
T 4f4c_A 976 AFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGML 1055 (1321)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999875788753765421478999999998778899999999999999999999899986
Q ss_pred CCCCCCHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 46422034312520100001210234454313799986443201111001235554777876768998558988899995
Q 005561 474 STTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDV 553 (691)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~l~nVsF~Y~~~~~~ 553 (691)
+.++..+ ..+ . ........|+|+|+||+|+||++++.
T Consensus 1056 ~~~~~~~-----------~~~--~------------------------------~~~~~~~~g~I~f~nVsf~Y~~~~~~ 1092 (1321)
T 4f4c_A 1056 RKISKID-----------SLS--L------------------------------AGEKKKLYGKVIFKNVRFAYPERPEI 1092 (1321)
T ss_dssp HCCCSSC-----------TTC--C------------------------------CSBCCCCCCCEEEEEEEECCTTSCSS
T ss_pred HCCCCCC-----------CCC--C------------------------------CCCCCCCCCEEEEEEEEEECCCCCCC
T ss_conf 0766577-----------766--7------------------------------78788888818999879857999988
Q ss_pred CCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHCEEEEECCCCCCCCCHHHH
Q ss_conf 43224038972799999987998948999999970478999868899960899995776312188804677631028999
Q 005561 554 VILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGEN 633 (691)
Q Consensus 554 ~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLlkLL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~GTIrdN 633 (691)
+||+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.++||++|++|||||+||+||||||
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1172 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN 1172 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred CCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEECCCHHHH
T ss_conf 21245169988989999989999819999999956863899789999998654999999854599878997327239999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHH
Q ss_conf 7549999999999999999982918899508853255303
Q 005561 634 IAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 634 I~lG~p~~~~tdeeI~~Al~~A~l~dfI~~LP~GldT~~~ 673 (691)
|+||.+.++++|||+++||+.|+++|||++||+||||.+.
T Consensus 1173 I~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1173 IIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp HSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred HHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCEEC
T ss_conf 7454999999999999999982984999717678999823
No 3
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=536.06 Aligned_cols=467 Identities=26% Similarity=0.361 Sum_probs=376.3
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------C-------------CHHHHHHH
Q ss_conf 15999999998-73789999999999999979799999999999984289--------9-------------14899999
Q 005561 161 ITWGLLWSLFL-KHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGAR--------P-------------EPLWKLLS 218 (691)
Q Consensus 161 ~~~~~l~~~~~-~~~~~l~~~ll~~l~~~i~~l~~P~~~~~iiD~i~~~~--------~-------------~~l~~~l~ 218 (691)
..+..++++.. .++..+++.+++.++..+.....|++.+.++|.+.... . ..+.....
T Consensus 33 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (1284)
T 3g5u_A 33 VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAY 112 (1284)
T ss_dssp CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 56999998726579999999999999999999999999999999986134443322222211111002446889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999981993336046934899999955999999998532445779
Q 005561 219 KVGLLYALEPIFTVIFVMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGF 298 (691)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~lR~~lf~kLl~lp~~ff~~~~sG~l~srls~Dv~~i~~~~~~~i~~~~~~ 298 (691)
.++++.++..++.++..+......+++..++|.++|+|++++|+.||+++++|++++|+++|++.+++.+...+.. .+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~--~~ 190 (1284)
T 3g5u_A 113 YYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGM--FF 190 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_conf 9999999999999999999999999999999999999998699899756887789999998899999999999999--99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHH
Q ss_conf 89999999999999896779999999999999999999964249999999999999989999971399999826369999
Q 005561 299 RALSEVIGTICILFNIAPQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQM 378 (691)
Q Consensus 299 ~~i~~vi~~l~il~~~~~~Lalii~~~~l~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gI~tIKa~~~E~~~~ 378 (691)
..+..+++.+++++.++|++++++.++++++.+...++.+...+..++..+..++.++.+.|+++|+++||+|++|+++.
T Consensus 191 ~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~ 270 (1284)
T 3g5u_A 191 QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKEL 270 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHH
T ss_conf 99999999999999998999999999999999999999999999999999999999999999997879999846539999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999997899999889999999999999999999987987249757989999999999999999999999999
Q 005561 379 LMFGRQVLAYQQSGIKLGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGD 458 (691)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~G~ltiG~lva~~~~~~~l~~pi~~l~~~~~~ 458 (691)
++|.+...++.+...+.........++..+..++..++++|+|++++..|.+++|.++++..+......|+..+...+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1284)
T 3g5u_A 271 ERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEA 350 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999929988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf 99999999999997446422034312520100001210234454313799986443201111001235554777876768
Q 005561 459 LRGTFAAVERINSILSTTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDI 538 (691)
Q Consensus 459 l~~~~~s~~RI~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I 538 (691)
++.+.++.+|+.++++.++..+ . . .. ....+..+.|+|
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~~~-----------~-~-~~-----------------------------~~~~~~~~~g~i 388 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPSID-----------S-F-SK-----------------------------SGHKPDNIQGNL 388 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCS-----------S-C-CS-----------------------------SCCCCTTCCCCE
T ss_pred HHHHHHHHHHHHHHHCCCCCCC-----------C-C-CC-----------------------------CCCCCCCCCCEE
T ss_conf 9999999999999972898677-----------6-6-65-----------------------------677777777718
Q ss_pred EEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHCEEE
Q ss_conf 99855898889999543224038972799999987998948999999970478999868899960899995776312188
Q 005561 539 CLEDVYFSYPLRPDVVILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSI 618 (691)
Q Consensus 539 ~l~nVsF~Y~~~~~~~vL~~IsL~I~~Ge~vAIVG~SGSGKSTLlkLL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 618 (691)
+|+||+|+|+++++.++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+|
T Consensus 389 ~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~ 468 (1284)
T 3g5u_A 389 EFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV 468 (1284)
T ss_dssp EEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEEEECCCCCCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHHEEE
T ss_conf 99998997699998710125458975998899989999979999999807889997389999998775799999865489
Q ss_pred EECCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHH
Q ss_conf 8046776310289997549999999999999999982918899508853255303
Q 005561 619 VNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 619 V~Qd~~LF~GTIrdNI~lG~p~~~~tdeeI~~Al~~A~l~dfI~~LP~GldT~~~ 673 (691)
|+|||+||++||+|||.+|+++ ++++++++|++.++++++|+++|+||||.+.
T Consensus 469 v~Q~~~l~~~ti~eNi~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~ 521 (1284)
T 3g5u_A 469 VSQEPVLFATTIAENIRYGRED--VTMDEIEKAVKEANAYDFIMKLPHQFDTLVG 521 (1284)
T ss_dssp ECSSCCCCSSCHHHHHHHHCSS--CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCS
T ss_pred ECCCCCCCCCCHHHHHHCCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCC
T ss_conf 8688753776699997457989--9999999999982969999746563345014
No 4
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=525.23 Aligned_cols=464 Identities=25% Similarity=0.405 Sum_probs=391.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1159999999987378999999999999997979999999999998428-991489999999999999999999999999
Q 005561 160 LITWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGA-RPEPLWKLLSKVGLLYALEPIFTVIFVMNM 238 (691)
Q Consensus 160 ~~~~~~l~~~~~~~~~~l~~~ll~~l~~~i~~l~~P~~~~~iiD~i~~~-~~~~l~~~l~~~~~~~~~~~~l~~~~~~~~ 238 (691)
...++.++.+++++++.+...+++.++..++.++.|++++.++|.+... +...++.....+++++++..++.++..+..
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIM 101 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999999999999999999999999999999997368889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998199333604693489999995599999999853244577989999999999999896779
Q 005561 239 NTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQL 318 (691)
Q Consensus 239 ~~~~~~v~~~lR~~lf~kLl~lp~~ff~~~~sG~l~srls~Dv~~i~~~~~~~i~~~~~~~~i~~vi~~l~il~~~~~~L 318 (691)
.+...++..++|.++|+|++++|..||+++++|++++|+++|++.+++.+...+.. .+..+..+++.++++++++|++
T Consensus 102 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~--~~~~~~~~i~~~~~l~~~~~~l 179 (598)
T 3qf4_B 102 LTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQ--FFSGIVTLAGAVIMMFRVNVIL 179 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHH--HHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999997799999768888999999999999999999999999--9999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999996424999999999999998999997139999982636999999999999999997899999
Q 005561 319 APILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTF 398 (691)
Q Consensus 319 alii~~~~l~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gI~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 398 (691)
++++.+.+++..++..++.+..++..++..+..+++.+.+.|.++|+++||+|++|+.+.++|.+...+..+...+....
T Consensus 180 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 259 (598)
T 3qf4_B 180 SLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIF 259 (598)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999997379999974870999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 88999999999999999999998798724975798999999999999999999999999999999999999997446422
Q 005561 399 KSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEI 478 (691)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~il~~G~~lv~~G~ltiG~lva~~~~~~~l~~pi~~l~~~~~~l~~~~~s~~RI~~il~~~~~ 478 (691)
......+..+...+..++++++|++++..|.+++|.++++..+...+..|+..+...+..++.+.++++|+.++++.++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 339 (598)
T 3qf4_B 260 SGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEE 339 (598)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999999999999985997899999999999999999999999999999999999999999768877
Q ss_pred CHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCC
Q ss_conf 03431252010000121023445431379998644320111100123555477787676899855898889999543224
Q 005561 479 DDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNG 558 (691)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~l~nVsF~Y~~~~~~~vL~~ 558 (691)
.+ . .. ........|+|+++||+|+|+. +.++|+|
T Consensus 340 ~~-------------~-~~------------------------------~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~ 373 (598)
T 3qf4_B 340 KD-------------D-PD------------------------------AVELREVRGEIEFKNVWFSYDK--KKPVLKD 373 (598)
T ss_dssp CC-------------C-SS------------------------------CCCCCSCCCCEEEEEEECCSSS--SSCSCCS
T ss_pred CC-------------C-CC------------------------------CCCCCCCCCEEEEEEEEEECCC--CCCCCCC
T ss_conf 77-------------7-77------------------------------7777777771899998997799--9860122
Q ss_pred EEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCC
Q ss_conf 03897279999998799894899999997047899986889996089999577631218880467763102899975499
Q 005561 559 LNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL 638 (691)
Q Consensus 559 IsL~I~~Ge~vAIVG~SGSGKSTLlkLL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~GTIrdNI~lG~ 638 (691)
+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||+||+++|++||+|||.+|+
T Consensus 374 isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~ 453 (598)
T 3qf4_B 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN 453 (598)
T ss_dssp EEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSS
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEHHHCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCC
T ss_conf 27998699889998999996999999994585799808999999830188999984108990798232463999974479
Q ss_pred CCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHH
Q ss_conf 99999999999999982918899508853255303
Q 005561 639 PDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 639 p~~~~tdeeI~~Al~~A~l~dfI~~LP~GldT~~~ 673 (691)
++ .++++++++++.++++++++.+|+||||.+.
T Consensus 454 ~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 486 (598)
T 3qf4_B 454 PG--ATDEEIKEAAKLTHSDHFIKHLPEGYETVLT 486 (598)
T ss_dssp TT--CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCH
T ss_pred CC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCHHC
T ss_conf 99--9999999999996978889746453236422
No 5
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=524.01 Aligned_cols=464 Identities=23% Similarity=0.345 Sum_probs=385.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5999999998737899999999999999797999999999999842899-148999999999999999999999999999
Q 005561 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-EPLWKLLSKVGLLYALEPIFTVIFVMNMNT 240 (691)
Q Consensus 162 ~~~~l~~~~~~~~~~l~~~ll~~l~~~i~~l~~P~~~~~iiD~i~~~~~-~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~ 240 (691)
.|+.++++++++++.+.+.+++.++..++.++.|++++.++|.+..... ..++.....++++.++..++..+..+...+
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (587)
T 3qf4_A 10 GSKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASY 89 (587)
T ss_dssp CCCCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 49999999999999999999999999999999999999999998736987999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999819933360469348999999559999999985324457798999999999999989677999
Q 005561 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (691)
Q Consensus 241 ~~~~v~~~lR~~lf~kLl~lp~~ff~~~~sG~l~srls~Dv~~i~~~~~~~i~~~~~~~~i~~vi~~l~il~~~~~~Lal 320 (691)
...++..++|.++|+|++++|..||+++++|++++|+++|++.+++.+...+.. .+..+..+++.+++++.++|++++
T Consensus 90 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~--~~~~~~~~i~~~~~l~~~~~~l~l 167 (587)
T 3qf4_A 90 ASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRI--VVRAPLLFVGGIVMAVSINVKLSS 167 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999997889799765888999999999999999999999999--999999999999999999899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999642499999999999999899999713999998263699999999999999999789999988
Q 005561 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (691)
Q Consensus 321 ii~~~~l~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gI~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (691)
++.+.+++..++..++.++..+..++..+..+++.+.+.|.++|+++||+|++|+.+.++|.+...++.+...+......
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (587)
T 3qf4_A 168 VLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIV 247 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999855999998621499999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99999999999999999999879872497579899999999999999999999999999999999999999744642203
Q 005561 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (691)
Q Consensus 401 ~~~~l~~~~~~~~~~~il~~G~~lv~~G~ltiG~lva~~~~~~~l~~pi~~l~~~~~~l~~~~~s~~RI~~il~~~~~~~ 480 (691)
....+..+...+..++++++|++++..|.+++|.++++..|...+..|+..+...+..++.+.++.+|+.++++.++..+
T Consensus 248 ~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 327 (587)
T 3qf4_A 248 FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE 327 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999999999998499389999999999999999999999999999999999999999976897657
Q ss_pred HHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEE
Q ss_conf 43125201000012102344543137999864432011110012355547778767689985589888999954322403
Q 005561 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLN 560 (691)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~l~nVsF~Y~~~~~~~vL~~Is 560 (691)
+... ....+...|.|+++||+|+|+. .+.++|+|+|
T Consensus 328 -------------~~~~------------------------------~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~is 363 (587)
T 3qf4_A 328 -------------EADN------------------------------ALALPNVEGSVSFENVEFRYFE-NTDPVLSGVN 363 (587)
T ss_dssp -------------CCTT------------------------------CBCCSCCCCCEEEEEEEECSSS-SSCCSEEEEE
T ss_pred -------------CCCC------------------------------CCCCCCCCCCEEEEEEEEECCC-CCCCCEECEE
T ss_conf -------------8877------------------------------6566888880799788998489-9976421117
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCCCC
Q ss_conf 89727999999879989489999999704789998688999608999957763121888046776310289997549999
Q 005561 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPD 640 (691)
Q Consensus 561 L~I~~Ge~vAIVG~SGSGKSTLlkLL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~GTIrdNI~lG~p~ 640 (691)
|+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||+||+++|++||+|||.+|+++
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~ 443 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED 443 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCC
T ss_conf 99869988999899999799999999278669986798999983407899998413897789867675599998524889
Q ss_pred CCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHH
Q ss_conf 999999999999982918899508853255303
Q 005561 641 ENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 641 ~~~tdeeI~~Al~~A~l~dfI~~LP~GldT~~~ 673 (691)
.+++++++|++.++++|+++.+|+||||...
T Consensus 444 --~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 444 --ATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred --CCHHHHHHHHHHHCCHHHHHHCCCCHHHHHC
T ss_conf --9999999999996849999756531212751
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=516.79 Aligned_cols=463 Identities=21% Similarity=0.330 Sum_probs=385.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CH-H----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998737899999999999999797999999999999842899---14-8----999999999999999999999
Q 005561 163 WGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP---EP-L----WKLLSKVGLLYALEPIFTVIF 234 (691)
Q Consensus 163 ~~~l~~~~~~~~~~l~~~ll~~l~~~i~~l~~P~~~~~iiD~i~~~~~---~~-l----~~~l~~~~~~~~~~~~l~~~~ 234 (691)
++.++.+++++++.+...+++.++..++.++.|++++.++|.+..... .. + +.....+.++.++..++.++.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999998899999999999999999999999999999999998168711467788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999819933360469348999999559999999985324457798999999999999989
Q 005561 235 VMNMNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNI 314 (691)
Q Consensus 235 ~~~~~~~~~~v~~~lR~~lf~kLl~lp~~ff~~~~sG~l~srls~Dv~~i~~~~~~~i~~~~~~~~i~~vi~~l~il~~~ 314 (691)
.+...+...++..++|.++|+|++++|..||+++++|++++|+++|++.+++.+...+.. .+..+..+++.+++++.+
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~--~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMN--IWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999998789999768986999999999999999999999999--999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67799999999999999999999642499999999999999899999713999998263699999999999999999789
Q 005561 315 APQLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIK 394 (691)
Q Consensus 315 ~~~Lalii~~~~l~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gI~tIKa~~~E~~~~~~~~~~~~~~~~~~~~ 394 (691)
+|+++++..+.+++..+...++.++..+..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 69999999999999999999999999999999999999999999999824999998166499999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99998899999999999999999999879872497579899999999999999999999999999999999999999744
Q 005561 395 LGTFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILS 474 (691)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~G~ltiG~lva~~~~~~~l~~pi~~l~~~~~~l~~~~~s~~RI~~il~ 474 (691)
..........+..+...+..++++++|++++..|.+++|.++++..+...+..|+..+...+..++.+.++++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999999999999999998599589999999999999999999999999999999999999999976
Q ss_pred CCCCCHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCC
Q ss_conf 64220343125201000012102344543137999864432011110012355547778767689985589888999954
Q 005561 475 TTEIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVV 554 (691)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~l~nVsF~Y~~~~~~~ 554 (691)
.++..+ +..+ ........|.|+++||+|+|++ .+.+
T Consensus 320 ~~~~~~-------------~~~~------------------------------~~~~~~~~~~i~~~~v~~~y~~-~~~~ 355 (578)
T 4a82_A 320 EDYDIK-------------NGVG------------------------------AQPIEIKQGRIDIDHVSFQYND-NEAP 355 (578)
T ss_dssp CCCSSC-------------CCTT------------------------------CCCCCCCSCCEEEEEEEECSCS-SSCC
T ss_pred CCCCCC-------------CCCC------------------------------CCCCCCCCCEEEEEEEEEECCC-CCCC
T ss_conf 897666-------------7877------------------------------6666777880799999997589-9974
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHCEEEEECCCCCCCCCHHHHH
Q ss_conf 32240389727999999879989489999999704789998688999608999957763121888046776310289997
Q 005561 555 ILNGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENI 634 (691)
Q Consensus 555 vL~~IsL~I~~Ge~vAIVG~SGSGKSTLlkLL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~GTIrdNI 634 (691)
+|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||+||+++|++||+|||
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 435 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI 435 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred CEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEEECCCCCCCCCHHHHH
T ss_conf 13433799879999999899998599999998467889996799999984427899996006899289834764599998
Q ss_pred HCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHH
Q ss_conf 549999999999999999982918899508853255303
Q 005561 635 AYGLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 635 ~lG~p~~~~tdeeI~~Al~~A~l~dfI~~LP~GldT~~~ 673 (691)
.+|+++ .+++++++|++.++++|+++++|+||||.+.
T Consensus 436 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~ 472 (578)
T 4a82_A 436 LLGRPT--ATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472 (578)
T ss_dssp GGGCSS--CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred HCCCCC--CCHHHHHHHHHHHCCHHHHHHCCCHHHHHHC
T ss_conf 527999--8899999999880959999757330102530
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=1.00 E-value=1 Score=505.97 Aligned_cols=462 Identities=21% Similarity=0.315 Sum_probs=382.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 599999999873789999999999999979799999999999984289914-8999999999999999999999999999
Q 005561 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEP-LWKLLSKVGLLYALEPIFTVIFVMNMNT 240 (691)
Q Consensus 162 ~~~~l~~~~~~~~~~l~~~ll~~l~~~i~~l~~P~~~~~iiD~i~~~~~~~-l~~~l~~~~~~~~~~~~l~~~~~~~~~~ 240 (691)
.++.++.+.+++++.+...+++.++..++.++.|++++.++|.+....... ++.....++++.++..++.....+...+
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (582)
T 3b5x_A 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSW 91 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999889999999999999999999999999999999998646866799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999819933360469348999999559999999985324457798999999999999989677999
Q 005561 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (691)
Q Consensus 241 ~~~~v~~~lR~~lf~kLl~lp~~ff~~~~sG~l~srls~Dv~~i~~~~~~~i~~~~~~~~i~~vi~~l~il~~~~~~Lal 320 (691)
...++..++|.++|+|++++|+.||+++++|++++|+++|++.+++.+...+.. .+..+..+++.++++++++|++++
T Consensus 92 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~--~~~~~~~~i~~~~~l~~~~~~l~l 169 (582)
T 3b5x_A 92 VSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVS--IVREGASIIGLLTLMFWNSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998699999778987899999998899999999999999--999999999999999998299999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999642499999999999999899999713999998263699999999999999999789999988
Q 005561 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (691)
Q Consensus 321 ii~~~~l~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gI~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (691)
++.+.+++..++...+.++..+..++..+..+++.+.+.|.++|+++||+|++|+.+.++|.+...+..+...+......
T Consensus 170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b5x_A 170 VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999951999997087599999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99999999999999999999879872497579899999999999999999999999999999999999999744642203
Q 005561 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (691)
Q Consensus 401 ~~~~l~~~~~~~~~~~il~~G~~lv~~G~ltiG~lva~~~~~~~l~~pi~~l~~~~~~l~~~~~s~~RI~~il~~~~~~~ 480 (691)
....+..+...+..++++++|++++..|.+++|.++++..+...+..|+..+...+.+++.+..+++|+.++++.++..+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b5x_A 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999999999998599889999999999999999999999999999999999999999975897677
Q ss_pred HHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEE
Q ss_conf 43125201000012102344543137999864432011110012355547778767689985589888999954322403
Q 005561 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLN 560 (691)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~l~nVsF~Y~~~~~~~vL~~Is 560 (691)
+ .. .......+.|+++||+|+|+++ +.++|+|+|
T Consensus 330 -------------~-~~-------------------------------~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~ 363 (582)
T 3b5x_A 330 -------------N-GK-------------------------------YEAERVNGEVDVKDVTFTYQGK-EKPALSHVS 363 (582)
T ss_pred -------------C-CC-------------------------------CCCCCCCCEEEEEEEEEECCCC-CCCCCCCCE
T ss_conf -------------7-77-------------------------------7777788828999989972899-865400416
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCC-C
Q ss_conf 897279999998799894899999997047899986889996089999577631218880467763102899975499-9
Q 005561 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL-P 639 (691)
Q Consensus 561 L~I~~Ge~vAIVG~SGSGKSTLlkLL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~GTIrdNI~lG~-p 639 (691)
|+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+.+++..++|++++||+|++++|++|++|||.+|. +
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 443 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG 443 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHCCEEEECCCCCCCCCCHHHHHHCCCCC
T ss_conf 99879998999899999799999999657789998798999985638899996485898279905310299998566889
Q ss_pred CCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHH
Q ss_conf 9999999999999982918899508853255303
Q 005561 640 DENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 640 ~~~~tdeeI~~Al~~A~l~dfI~~LP~GldT~~~ 673 (691)
+.++++++++++.++++++++++|+||||.+.
T Consensus 444 --~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~ 475 (582)
T 3b5x_A 444 --EYTREQIEQAARQAHAMEFIENMPQGLDTVIG 475 (582)
T ss_pred --CCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHC
T ss_conf --99999999999987989999847653345106
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=1.00 E-value=1 Score=505.44 Aligned_cols=466 Identities=29% Similarity=0.435 Sum_probs=380.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-C---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5999999998737899999999999999797999999999999842899-1---48999999999999999999999999
Q 005561 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-E---PLWKLLSKVGLLYALEPIFTVIFVMN 237 (691)
Q Consensus 162 ~~~~l~~~~~~~~~~l~~~ll~~l~~~i~~l~~P~~~~~iiD~i~~~~~-~---~l~~~l~~~~~~~~~~~~l~~~~~~~ 237 (691)
.++.++.+.+++++.+...+++.++..++.++.|++++.++|.+..... . .++.....++++.++..++..+..+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (595)
T 2yl4_A 6 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYL 85 (595)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999887899999999999999999999999999999999735740266799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999819933360469348999999559999999985324457798999999999999989677
Q 005561 238 MNTVWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQ 317 (691)
Q Consensus 238 ~~~~~~~v~~~lR~~lf~kLl~lp~~ff~~~~sG~l~srls~Dv~~i~~~~~~~i~~~~~~~~i~~vi~~l~il~~~~~~ 317 (691)
..+...++..++|.++|+|++++|+.||+++++|++++|+++|++.+++.+...+.. .+..+..+++.++++++++|+
T Consensus 86 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~--~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 86 MQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSD--GLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHH--HHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999998199999777984889999999999999999999999--999999999999999998199
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999642499999999999999899999713999998263699999999999999999789999
Q 005561 318 LAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGT 397 (691)
Q Consensus 318 Lalii~~~~l~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gI~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~ 397 (691)
+++++.+.+++..++...+.+...+..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+...++.+...+...
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999811999998375699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 98899999999999999999999879872497579899999999999999999999999999999999999999744642
Q 005561 398 FKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTE 477 (691)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~il~~G~~lv~~G~ltiG~lva~~~~~~~l~~pi~~l~~~~~~l~~~~~s~~RI~~il~~~~ 477 (691)
.......+..+...+..++++++|++++..|.+++|.++++..+...+..|+..+...+.+++.+..+++|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999999998699789999999999999999999999999999999999999999983897
Q ss_pred CCHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC-EEEEEEEEECCCCCCCCCC
Q ss_conf 203431252010000121023445431379998644320111100123555477787676-8998558988899995432
Q 005561 478 IDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGD-ICLEDVYFSYPLRPDVVIL 556 (691)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-I~l~nVsF~Y~~~~~~~vL 556 (691)
..+ . + .. ........++ |+++||+|+|+++++.++|
T Consensus 324 ~~~-----------~-~-~~------------------------------~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl 360 (595)
T 2yl4_A 324 KLP-----------F-N-EG------------------------------VILNEKSFQGALEFKNVHFAYPARPEVPIF 360 (595)
T ss_dssp SSC-----------S-S-CS------------------------------BCCCTTTCCCCEEEEEEEEECSSCTTSEEE
T ss_pred CCC-----------C-C-CC------------------------------CCCCCCCCCCEEEEEEEEEEECCCCCCCCC
T ss_conf 667-----------7-7-78------------------------------777767899838999889985899888120
Q ss_pred CCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHCEEEEECCCCCCCCCHHHHHHC
Q ss_conf 24038972799999987998948999999970478999868899960899995776312188804677631028999754
Q 005561 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAY 636 (691)
Q Consensus 557 ~~IsL~I~~Ge~vAIVG~SGSGKSTLlkLL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~GTIrdNI~l 636 (691)
+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+.+++.+++|++++||+|++.+|++||+|||.+
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~ 440 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAY 440 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHT
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHCEEEECCCCCCCCCCHHHHHHH
T ss_conf 11279984998899989999979999999825857898379999998111799999732289836883268779999840
Q ss_pred CCCC-CCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCH
Q ss_conf 9999-99999999999998291889950885325530
Q 005561 637 GLPD-ENVSKDDIIKAAKAANAHDFIISLPQVWLSKS 672 (691)
Q Consensus 637 G~p~-~~~tdeeI~~Al~~A~l~dfI~~LP~GldT~~ 672 (691)
|.+. ...++++++++++.++++|+++++|+||||.+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~ 477 (595)
T 2yl4_A 441 GADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477 (595)
T ss_dssp TSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBC
T ss_pred CCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCC
T ss_conf 5877665689999999998697999974732013501
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=1.00 E-value=1 Score=503.81 Aligned_cols=462 Identities=24% Similarity=0.327 Sum_probs=381.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 599999999873789999999999999979799999999999984289914-8999999999999999999999999999
Q 005561 162 TWGLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARPEP-LWKLLSKVGLLYALEPIFTVIFVMNMNT 240 (691)
Q Consensus 162 ~~~~l~~~~~~~~~~l~~~ll~~l~~~i~~l~~P~~~~~iiD~i~~~~~~~-l~~~l~~~~~~~~~~~~l~~~~~~~~~~ 240 (691)
.++.++.+.+++++.+...+++.++..++.++.|++.+.++|.+....... ++.....++++.++..++..+..+...+
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (582)
T 3b60_A 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISW 91 (582)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999988436865799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999819933360469348999999559999999985324457798999999999999989677999
Q 005561 241 VWEKVMSIVKAQIFRRVLIQKAEFFDRYKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAPQLAP 320 (691)
Q Consensus 241 ~~~~v~~~lR~~lf~kLl~lp~~ff~~~~sG~l~srls~Dv~~i~~~~~~~i~~~~~~~~i~~vi~~l~il~~~~~~Lal 320 (691)
...++..++|.++|+|++++|+.||+++++|++++|+++|++.+++.+...+.. .+..+..+++.++++++++|++++
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~--~~~~~~~~i~~~~~l~~~~~~l~l 169 (582)
T 3b60_A 92 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALIT--VVREGASIIGLFIMMFYYSWQLSI 169 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998099999788986589999998799999999999999--999999999999999998099999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999642499999999999999899999713999998263699999999999999999789999988
Q 005561 321 ILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLGTFKS 400 (691)
Q Consensus 321 ii~~~~l~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gI~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (691)
++.+.+++..++...+.++..+..++..+..+++.+.+.|.++|+++||+|++|+.+.++|.+...++.+...+......
T Consensus 170 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b60_A 170 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 249 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999961999998376899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 99999999999999999999879872497579899999999999999999999999999999999999999744642203
Q 005561 401 LNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTTEIDD 480 (691)
Q Consensus 401 ~~~~l~~~~~~~~~~~il~~G~~lv~~G~ltiG~lva~~~~~~~l~~pi~~l~~~~~~l~~~~~s~~RI~~il~~~~~~~ 480 (691)
....+..+...+..++++++|++++..|.+++|.++++..+...+..|+..+...+.+++.+..+++|+.++++.++..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b60_A 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD 329 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999999999999999999999998499989999999999999999999999999999999999999999975998766
Q ss_pred HHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEE
Q ss_conf 43125201000012102344543137999864432011110012355547778767689985589888999954322403
Q 005561 481 ALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVILNGLN 560 (691)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~l~nVsF~Y~~~~~~~vL~~Is 560 (691)
+. . ...+...+.|+++||+|+|+++ +.++|+|+|
T Consensus 330 ---------------~~----------~--------------------~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~ 363 (582)
T 3b60_A 330 ---------------EG----------K--------------------RVIDRATGDLEFRNVTFTYPGR-EVPALRNIN 363 (582)
T ss_dssp ---------------CC----------C--------------------BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEE
T ss_pred ---------------CC----------C--------------------CCCCCCCCCEEEEEEEEECCCC-CCCCCCCEE
T ss_conf ---------------77----------7--------------------7777888847999889973999-974415615
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHCEEEEECCCCCCCCCHHHHHHCCC-C
Q ss_conf 897279999998799894899999997047899986889996089999577631218880467763102899975499-9
Q 005561 561 LTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGL-P 639 (691)
Q Consensus 561 L~I~~Ge~vAIVG~SGSGKSTLlkLL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~GTIrdNI~lG~-p 639 (691)
|+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++..++|++++||+|++.+|++|++|||.+|. +
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 443 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE 443 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCCCC
T ss_conf 99769998999899999899999998610689897697999982306999999608088068747787899998545999
Q ss_pred CCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHH
Q ss_conf 9999999999999982918899508853255303
Q 005561 640 DENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 640 ~~~~tdeeI~~Al~~A~l~dfI~~LP~GldT~~~ 673 (691)
+.++++++++++.++++++++++|+||||.+.
T Consensus 444 --~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~ 475 (582)
T 3b60_A 444 --EYSREQIEEAARMAYAMDFINKMDNGLDTIIG 475 (582)
T ss_dssp --CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCC
T ss_pred --CCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCC
T ss_conf --98999999999984979999845041145114
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=487.48 Aligned_cols=466 Identities=24% Similarity=0.310 Sum_probs=368.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998737899999999999999797999999999999842899-14----89999999999999999999999999
Q 005561 164 GLLWSLFLKHKLRLGLSVLTLIGCTTCTLSMPIFSGRFFEVLIGARP-EP----LWKLLSKVGLLYALEPIFTVIFVMNM 238 (691)
Q Consensus 164 ~~l~~~~~~~~~~l~~~ll~~l~~~i~~l~~P~~~~~iiD~i~~~~~-~~----l~~~l~~~~~~~~~~~~l~~~~~~~~ 238 (691)
..++++.++.++.+.+.+++.++........+++.+.+++.+..... .. .......++++.++..++..+..+..
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 773 (1284)
T 3g5u_A 694 WRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTF 773 (1284)
T ss_dssp THHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999845157999999999999999999999999999999855685033677999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998199333604--6934899999955999999998532445779899999999999998967
Q 005561 239 NTVWEKVMSIVKAQIFRRVLIQKAEFFDR--YKVGELSGLLTSDLGSLKALVSENISRDRGFRALSEVIGTICILFNIAP 316 (691)
Q Consensus 239 ~~~~~~v~~~lR~~lf~kLl~lp~~ff~~--~~sG~l~srls~Dv~~i~~~~~~~i~~~~~~~~i~~vi~~l~il~~~~~ 316 (691)
.+..+++..++|.++|++++++|++||++ +++|++++|+++|++.+++.+...+.. .+..+..+++.+++++.++|
T Consensus 774 ~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~--~~~~~~~~~~~~i~~~~~~~ 851 (1284)
T 3g5u_A 774 GKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAV--IFQNIANLGTGIIISLIYGW 851 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999839988875789988999999999999999999999999--99999999999999999969
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999964249999999999999989999971399999826369999999999999999978999
Q 005561 317 QLAPILGVLVLTVSVLVAVYKRSTVPVFKAHGLAQASIADCVTETFSAIRTVRSFGGEKRQMLMFGRQVLAYQQSGIKLG 396 (691)
Q Consensus 317 ~Lalii~~~~l~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gI~tIKa~~~E~~~~~~~~~~~~~~~~~~~~~~ 396 (691)
++++++.++++++.+......+..........+..+.....+.|+++|+++||+++.|+++.++|.+......+...+..
T Consensus 852 ~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~ 931 (1284)
T 3g5u_A 852 QLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKA 931 (1284)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999998899999846599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99889999999999999999999987987249757989999999999999999999999999999999999999974464
Q 005561 397 TFKSLNESLTRIAIYISLLALYCLGGSKVKAGELSVGIVASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSILSTT 476 (691)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~il~~G~~lv~~G~ltiG~lva~~~~~~~l~~pi~~l~~~~~~l~~~~~s~~RI~~il~~~ 476 (691)
........+.....++..++++++|++++..|.+++|.++.+..+......++..+...+.+++.+..+.+|+.++++.+
T Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~ 1011 (1284)
T 3g5u_A 932 HVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKT 1011 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999999999999999999909806999999999999999999999999999999999999999998388
Q ss_pred CCCHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCC
Q ss_conf 22034312520100001210234454313799986443201111001235554777876768998558988899995432
Q 005561 477 EIDDALANGLERDIQQKHVEDENIKLFLFDGSNGKHQHLNMHYMSHLKSANSVCSFAWSGDICLEDVYFSYPLRPDVVIL 556 (691)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~l~nVsF~Y~~~~~~~vL 556 (691)
+..+ . . .. ....+....|.|+|+||+|+|+++++.++|
T Consensus 1012 ~~~~-----------~-~-~~-----------------------------~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l 1049 (1284)
T 3g5u_A 1012 PEID-----------S-Y-ST-----------------------------QGLKPNMLEGNVQFSGVVFNYPTRPSIPVL 1049 (1284)
T ss_dssp CSSS-----------S-C-CS-----------------------------SCCCTTTTSCCEEEEEEEBCCSCGGGCCSB
T ss_pred CCCC-----------C-C-CC-----------------------------CCCCCCCCCCCEEEEEEEEECCCCCCCEEE
T ss_conf 7666-----------6-5-55-----------------------------665456777857999989977999987002
Q ss_pred CCEEEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHCEEEEECCCCCCCCCHHHHHHC
Q ss_conf 24038972799999987998948999999970478999868899960899995776312188804677631028999754
Q 005561 557 NGLNLTLKSGSVTALVGSSGAGKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAY 636 (691)
Q Consensus 557 ~~IsL~I~~Ge~vAIVG~SGSGKSTLlkLL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~GTIrdNI~l 636 (691)
+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||+||+.+|++||+|||.+
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~ 1129 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTC
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCCCCCHHHHHHC
T ss_conf 03059976998899988999978999999946867899779899998000789999702689877874066669999746
Q ss_pred CCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCHH
Q ss_conf 9999999999999999982918899508853255303
Q 005561 637 GLPDENVSKDDIIKAAKAANAHDFIISLPQVWLSKSH 673 (691)
Q Consensus 637 G~p~~~~tdeeI~~Al~~A~l~dfI~~LP~GldT~~~ 673 (691)
|.+....+++++++|++.++++++++++|+||||.+.
T Consensus 1130 ~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vg 1166 (1284)
T 3g5u_A 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166 (1284)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCS
T ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCC
T ss_conf 6877899999999999983959999727042456117
Done!