Citrus Sinensis ID: 005562

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
MNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccHHHHcccccccccccccEEEEEccccccccccEEEEHHHHHHHcccccccccccEEEEEccccEEEEEEEEEccccccEEEEcccHHHHHccccccccEEEEEEccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccHHHHHHHccccccccHHHHHHcccccccHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHEEccHccccccccEEEcHHHHHHHccccccccccEEEEEcccccEEEEEEEEcccccccEEEEccccHHHHHcccccccEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHHccHHHHHHHcccccccccEEEEEEccEEEEcccccEEcccEEEEEccccccEEEEEcccccccccccccEEcccccccccccccccccccccHHHccHHHHHHHccccccHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccc
mngglksgsrdipenanagsncdmqpssclnkpqqsstlkddsstphfglavsyaspsetnsqigvsgshlrpvvqpplvkqfhgnlpngadslgetqvrngrprvdargrsqllprywprftdqdlqqisgdsnsvITPLFEKMLsasdagrigrlvlpkkcaeayfppisqpeglplkvqdskgKEWIFQFrfwpnnnsrmyvLEGVTPCiqnmqlqagdivtfsrlepegklvmgfrkassasasdqdneankagtgipanghaeladpsswskvdksgyiaTEALgakssisrkrknttlgskskrlkieNEDVIELKLTWEEaqgllrpppnnvpsvvviegyefeeyedapilgkptifatdnvgekiqwvqcedcskwrkvpanarlpskwtcsgnlwdpersVCSVAQELREEQLEdliapnnpasskklkaakqepDCVEALEGLDTLANLAIlgegegltassqattkhprhrpgcscivciqppsgkgpkhkqtctcnvcltvKRRFHTLMLRREKKQSEKDAETSRKKQqqqklpvpeksadddplscsktgnnspnekkvvsegsdddssriksstspfkgqidlniqpereeelspgsdsgSMIRLLQDATEKYLRQQrlsssgvntssvdneglqggvtgekisngitldgshqdtdedhhgslsvkasaSISATG
mngglksgsrdipENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPngadslgetqvrngrprvdargrsqllprywPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAyfppisqpeglPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAssasasdqdneaNKAGTGIPANGHAELADPSSWSKVDKSGYIATealgakssisrkrknttlgskskrlkienedvIELKLTWeeaqgllrpppnnvpsVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWrkvpanarlpskwtcsgnlwdpeRSVCSVAQELREEQLedliapnnpasskklKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPpsgkgpkhkqtctcnvcltvkRRFHTLMLrrekkqsekdaetsrkkqqqqklpvpeksadddplscsktgnnspnekkvvsegsdddssriksstspfkgqidlniqpereeelspgsdsgSMIRLLQDATEKYLRQQRlsssgvntssvdneglqggvTGEKISNGITLDGSHQdtdedhhgslsvkasasisatg
MNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRpppnnvpsvvvIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG
*****************************************************************************************************************LLPRYWPRFTDQDLQQI****NSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLV*******************************************************************************EDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSV********************************CVEALEGLDTLANLAILGE*******************GCSCIVCIQ*********KQTCTCNVCLTVKRRFHTLML************************************************************************************************************************************************************************
*******************************************************************************************************************************************PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVM*************************ANGHAELADPSSWSKVDKSGYIA***************************IENEDVIELKLTWEEAQGL*******************************TIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLW**********************************************************************************************************************************************************************************************************************************************************************************************
**********DIPENANAGSNCD*********************TPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGF*****************AGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPA***********PDCVEALEGLDTLANLAILGEGEGL**************PGCSCIVCIQPP*********TCTCNVCLTVKRRFHTLMLR*******************************************************************FKGQIDLNIQPE***********GSMIRLLQDATEKYLRQ*************DNEGLQGGVTGEKISNGITLDGS************************
*******************************************************************************************************************PRYWPRFTDQ*L******SNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAS****************************************************************SKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLK************EGLDTLANLAILGEG***************HRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQ*****************************************************************QI***IQPERE******SDSGSMIRLLQDATEKYLRQQRL*********************************************************
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MNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRxxxxxxxxxxxxxxxxxxxxxLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query691 2.2.26 [Sep-21-2011]
Q0D5G4955 B3 domain-containing prot yes no 0.829 0.6 0.568 0.0
Q5CCK4780 B3 domain-containing tran yes no 0.758 0.671 0.464 1e-141
Q6Z3U3949 B3 domain-containing prot no no 0.746 0.543 0.479 1e-136
Q8W4L5790 B3 domain-containing tran no no 0.761 0.665 0.462 1e-128
O65420713 B3 domain-containing tran no no 0.457 0.443 0.480 1e-71
Q7XKC4438 Putative B3 domain-contai no no 0.154 0.244 0.444 2e-18
Q9LW31313 B3 domain-containing tran no no 0.162 0.357 0.407 4e-18
Q7XKC5433 B3 domain-containing prot no no 0.147 0.235 0.456 5e-18
Q6Z1Z3362 B3 domain-containing prot no no 0.147 0.281 0.407 8e-16
A4LBC0402 B3 domain-containing prot no no 0.208 0.358 0.337 2e-15
>sp|Q0D5G4|Y7633_ORYSJ B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2 Back     alignment and function desciption
 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/619 (56%), Positives = 431/619 (69%), Gaps = 46/619 (7%)

Query: 34  QQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRP-VVQPPLVKQFHGNLPNGAD 92
              S LKDD S    GL+ +++S +     I +  +  +  +    L KQF+ +  +  D
Sbjct: 346 HHPSILKDDPSAVPAGLSSNFSSANGPKDHIRIGPTQQQQQMASSSLQKQFYSH--SVID 403

Query: 93  SLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAG 152
           +  + Q+RNGRPR+DA+ RSQLLPRYWPR TDQ+LQ +SGDSNSVITPLFEKMLSASDAG
Sbjct: 404 NDFQAQLRNGRPRMDAKARSQLLPRYWPRITDQELQHLSGDSNSVITPLFEKMLSASDAG 463

Query: 153 RIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPC 212
           RIGRLVLPKKCAEAYFP ISQ EGLPLKVQD+ GKEW+FQFRFWPNNNSRMYVLEGVTPC
Sbjct: 464 RIGRLVLPKKCAEAYFPAISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVLEGVTPC 523

Query: 213 IQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIP---ANGHAEL 269
           IQ+MQLQAGD VTFSR++PEGKLVMGFRKA++ SA +QD     A   +P   AN    +
Sbjct: 524 IQSMQLQAGDTVTFSRIDPEGKLVMGFRKATNLSA-EQDQPTKPANGVLPPPEANNKVVV 582

Query: 270 ADPS------------------------SWSKVDKSGYIATEALGAKSS--ISRKRKNTT 303
            D S                        +  K+DK      E  G  SS  +  KRK T+
Sbjct: 583 PDSSPNAAVPRPIKVNTESKSSSPVEQATACKIDKGALPQKEGPGTSSSSPLPVKRKATS 642

Query: 304 LGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPT 363
           +G K KR  +++E+ +ELK+TWEEAQ LLRPPP   PS+VV++G+EFEEYE+ PILG+ T
Sbjct: 643 VGPKIKRFHMDSEESMELKITWEEAQELLRPPP-KAPSIVVVDGHEFEEYEEPPILGRRT 701

Query: 364 IFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQL 423
            F TD  GE  QW QCEDCSKWRK+P +A LPSKWTCS N WD ERS C  AQE+  E+L
Sbjct: 702 YFVTDQSGENHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDSERSSCDSAQEINMEEL 761

Query: 424 EDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHR 483
            ++I P  P ++KK K  K + D ++  +GLDTLANLAILGEGE L   SQ TT+HPRHR
Sbjct: 762 GEMI-PIKPGAAKKTK-GKVDTDNIDVSDGLDTLANLAILGEGESL--PSQPTTRHPRHR 817

Query: 484 PGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKK-QSEKDAETSRKKQQ 542
           PGCSCIVCIQPPSGKGPKHKQTCTCNVC+TV+RRF TLM+RREK+ QSEKD+   RK++ 
Sbjct: 818 PGCSCIVCIQPPSGKGPKHKQTCTCNVCMTVRRRFRTLMMRREKRQQSEKDSGVPRKREP 877

Query: 543 -QQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVS-EGSDDDSSRIKSSTSPFKGQIDLNI 600
            Q   PVP+  +   P S S     SP+++   + EG +D S   K ++SP K QIDLN 
Sbjct: 878 GQSSEPVPQSGSGAHPTSTS-----SPHQRADTNGEGPEDMSIDNKRTSSPVKNQIDLNS 932

Query: 601 QPEREEELSPGSDSGSMIR 619
           QPERE+E SP SD+  ++R
Sbjct: 933 QPEREDEQSPKSDATRLLR 951

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q5CCK4|VAL2_ARATH B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z3U3|Y7797_ORYSJ B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4L5|VAL1_ARATH B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=1 SV=1 Back     alignment and function description
>sp|O65420|VAL3_ARATH B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=4 SV=3 Back     alignment and function description
>sp|Q7XKC4|Y4765_ORYSJ Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japonica GN=Os04g0676650 PE=3 SV=2 Back     alignment and function description
>sp|Q9LW31|FUS3_ARATH B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2 Back     alignment and function description
>sp|Q7XKC5|IDEFH_ORYSJ B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica GN=Os04g0676600 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z1Z3|IDEF1_ORYSJ B3 domain-containing protein IDEF1 OS=Oryza sativa subsp. japonica GN=IDEF1 PE=2 SV=1 Back     alignment and function description
>sp|A4LBC0|LFL1_ORYSJ B3 domain-containing protein LFL1 OS=Oryza sativa subsp. japonica GN=LFL1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
224076806 918 predicted protein [Populus trichocarpa] 0.982 0.739 0.719 0.0
255560846 854 transcription factor, putative [Ricinus 0.942 0.762 0.734 0.0
449433878 896 PREDICTED: B3 domain-containing protein 0.992 0.765 0.690 0.0
449479362 899 PREDICTED: LOW QUALITY PROTEIN: B3 domai 0.997 0.766 0.694 0.0
357446313 888 B3 domain-containing transcription repre 0.937 0.729 0.730 0.0
224116220 842 predicted protein [Populus trichocarpa] 0.942 0.773 0.711 0.0
356549413 855 PREDICTED: B3 domain-containing protein 0.945 0.763 0.699 0.0
356549411 889 PREDICTED: B3 domain-containing protein 0.978 0.760 0.688 0.0
356555034 854 PREDICTED: B3 domain-containing protein 0.931 0.754 0.700 0.0
218199845 802 hypothetical protein OsI_26485 [Oryza sa 0.824 0.710 0.571 0.0
>gi|224076806|ref|XP_002305001.1| predicted protein [Populus trichocarpa] gi|222847965|gb|EEE85512.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/703 (71%), Positives = 566/703 (80%), Gaps = 24/703 (3%)

Query: 1   MNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSET 60
           +NG L+   +DI EN NAG   + QP       Q SS+L +D+S   FG+ + Y S SE+
Sbjct: 228 INGNLRIRLQDIVENGNAGIIGEEQP-------QPSSSLMEDASGQQFGITIPYKSISES 280

Query: 61  NSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWP 120
           NSQI  S + L+P   PP  K FHG+L NG DS  +  +RNG+PR DARGRSQLLPRYWP
Sbjct: 281 NSQIEGSVNALQPAPPPPFTKHFHGSLHNGVDSSVDGHIRNGKPRTDARGRSQLLPRYWP 340

Query: 121 RFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLK 180
           RFTD +LQQISG+SNSVI PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPL+
Sbjct: 341 RFTDGELQQISGNSNSVIKPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLR 400

Query: 181 VQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFR 240
           VQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFR
Sbjct: 401 VQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFR 460

Query: 241 KASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRK 300
           KA+SA  SDQDNE ++ G G+   G AEL DPS WSKVDKSGYIA E L  KSSI RKRK
Sbjct: 461 KATSAPPSDQDNETSQTGNGVSTKGDAEL-DPSPWSKVDKSGYIAKEVLEGKSSI-RKRK 518

Query: 301 NTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILG 360
           ++TLGSKSKRL+IENED+IELKLTWEEAQGLLRPPP++VPS+V IEG+EFEEYEDAP+LG
Sbjct: 519 SSTLGSKSKRLRIENEDMIELKLTWEEAQGLLRPPPDHVPSIVAIEGFEFEEYEDAPVLG 578

Query: 361 KPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELRE 420
           KPTIFATDNVG+KIQWVQCEDC KWRK+PANA LPSKW CS N WDPERS CSVAQEL  
Sbjct: 579 KPTIFATDNVGQKIQWVQCEDCLKWRKLPANALLPSKWACSSNTWDPERSSCSVAQELTA 638

Query: 421 EQLEDLI-APNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKH 479
           EQLEDL+ + N   +SK+ K AK++ D VEALEGLDTLANLAILGEGE   ASSQATTKH
Sbjct: 639 EQLEDLLPSCNLVVTSKRSKDAKKDIDRVEALEGLDTLANLAILGEGEAFPASSQATTKH 698

Query: 480 PRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREK---------KQS 530
           PRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVC TVKRRF TLM++REK         KQS
Sbjct: 699 PRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCQTVKRRFKTLMMKREKKQSEKEAETKQS 758

Query: 531 EKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTG--NNSPNEKKVVSEGSDDDSSRIKSS 588
           EK+AET+RK+QQ+   P  EK  DD+P   S TG  + SPN+KK VSEGSDDD SR+KSS
Sbjct: 759 EKEAETTRKRQQE---PSAEKLLDDEPSPSSNTGSESGSPNKKKTVSEGSDDDPSRMKSS 815

Query: 589 TSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEG 648
           TSPFKGQIDLNIQPERE+ELSPGSDSG M+R+LQDATE YLR QR  SS  + +   N  
Sbjct: 816 TSPFKGQIDLNIQPEREDELSPGSDSGGMMRMLQDATETYLRMQRFLSSDGDNNPSGNHM 875

Query: 649 LQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG 691
           L  G T EK+S+ I L  SHQD D+DH  + S+ ASAS  ATG
Sbjct: 876 LSSGGTREKVSDVIMLGSSHQDADKDHPSAFSMNASASTPATG 918

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255560846|ref|XP_002521436.1| transcription factor, putative [Ricinus communis] gi|223539335|gb|EEF40926.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449433878|ref|XP_004134723.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479362|ref|XP_004155579.1| PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os07g0563300-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357446313|ref|XP_003593434.1| B3 domain-containing transcription repressor VAL2 [Medicago truncatula] gi|355482482|gb|AES63685.1| B3 domain-containing transcription repressor VAL2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224116220|ref|XP_002317242.1| predicted protein [Populus trichocarpa] gi|222860307|gb|EEE97854.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549413|ref|XP_003543088.1| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356549411|ref|XP_003543087.1| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356555034|ref|XP_003545844.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Glycine max] Back     alignment and taxonomy information
>gi|218199845|gb|EEC82272.1| hypothetical protein OsI_26485 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
TAIR|locus:2116592780 HSL1 "HSI2-like 1" [Arabidopsi 0.712 0.630 0.502 2.9e-133
TAIR|locus:2064417790 HSI2 "high-level expression of 0.806 0.705 0.446 2.4e-125
TAIR|locus:2088439313 FUS3 "FUSCA 3" [Arabidopsis th 0.160 0.354 0.412 3e-16
TAIR|locus:2039165244 ABS2 "ABNORMAL SHOOT 2" [Arabi 0.178 0.504 0.382 2.2e-15
UNIPROTKB|Q6Z1Z3362 IDEF1 "B3 domain-containing pr 0.273 0.522 0.326 2.6e-15
UNIPROTKB|Q7XKC5433 LOC_Os04g58000 "B3 domain-cont 0.147 0.235 0.456 3.3e-15
UNIPROTKB|A4LBC0402 LFL1 "B3 domain-containing pro 0.312 0.537 0.293 2e-14
UNIPROTKB|P37398727 VP1 "B3 domain-containing prot 0.192 0.182 0.357 1.3e-13
TAIR|locus:2032170363 LEC2 "LEAFY COTYLEDON 2" [Arab 0.260 0.495 0.308 1.9e-13
TAIR|locus:2093166720 ABI3 "AT3G24650" [Arabidopsis 0.224 0.215 0.331 6.9e-13
TAIR|locus:2116592 HSL1 "HSI2-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1260 (448.6 bits), Expect = 2.9e-133, Sum P(2) = 2.9e-133
 Identities = 259/515 (50%), Positives = 341/515 (66%)

Query:    58 SETNS--QIGVSGSHL--RPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQ 113
             S+TNS  Q+      L  +P    P+     G  P+G  SL  +Q+   RP  + RG++Q
Sbjct:   200 SKTNSIFQLAPRSRQLLPKPANSAPIAA---GMEPSG--SL-VSQIHVARPPPEGRGKTQ 253

Query:   114 LLPRYWPRFTDQDLQQISGD----SNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFP 169
             LLPRYWPR TDQ+L Q+SG     SNS I PLFEK+LSASDAGRIGRLVLPK CAEAYFP
Sbjct:   254 LLPRYWPRITDQELLQLSGQYPHLSNSKIIPLFEKVLSASDAGRIGRLVLPKACAEAYFP 313

Query:   170 PISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL 229
             PIS PEGLPLK+QD KGKEW+FQFRFWPNNNSRMYVLEGVTPCIQ+MQLQAGD VTFSR 
Sbjct:   314 PISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRT 373

Query:   230 EPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEAL 289
             EPEGKLVMG+RKA++++A+     +++    + +N         +WSK++KS  +A + L
Sbjct:   374 EPEGKLVMGYRKATNSTATQMFKGSSEPNLNMFSNSLNPGCGDINWSKLEKSEDMAKDNL 433

Query:   290 GAKSSISRKRKNT-TLGSKSKRLKIENEDVIELKLTWEEAQGLLRXXXXXXXXXXXIEGY 348
               +SS++  RK    +G+KSKRL I++ DV+ELK+TWEEAQ LLR           +E  
Sbjct:   434 FLQSSLTSARKRVRNIGTKSKRLLIDSVDVLELKITWEEAQELLRPPQSTKPSIFTLENQ 493

Query:   349 EFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPE 408
             +FEEY++ P+ GK T+F +   GE+ QWVQC+ C KWR++P +  LP KW+CS NL DP 
Sbjct:   494 DFEEYDEPPVFGKRTLFVSRQTGEQEQWVQCDACGKWRQLPVDILLPPKWSCSDNLLDPG 553

Query:   409 RSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEG 468
             RS CS   EL   + + L+  +     ++L ++ ++ +  +    L++L N  I   GE 
Sbjct:   554 RSSCSAPDELSPREQDTLVRQSKEFKRRRLASSNEKLNQSQDASALNSLGNAGITTTGEQ 613

Query:   469 LTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKK 528
                +  ATTKHPRHR GCSCIVC QPPSGKG KHK +CTC VC  VKRRF TLMLR+  K
Sbjct:   614 GEITVAATTKHPRHRAGCSCIVCSQPPSGKG-KHKPSCTCTVCEAVKRRFRTLMLRKRNK 672

Query:   529 ----QSEKDAETS---RKKQQQQKLPVPEKSADDD 556
                 Q+ + A++    R + + + +P  E +A ++
Sbjct:   673 GEAGQASQQAQSQSECRDETEVESIPAVELAAGEN 707
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0010030 "positive regulation of seed germination" evidence=IGI
GO:2000034 "regulation of seed maturation" evidence=IGI
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
GO:0009790 "embryo development" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048316 "seed development" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2064417 HSI2 "high-level expression of sugar-inducible gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088439 FUS3 "FUSCA 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039165 ABS2 "ABNORMAL SHOOT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z1Z3 IDEF1 "B3 domain-containing protein IDEF1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XKC5 LOC_Os04g58000 "B3 domain-containing protein Os04g0676600" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A4LBC0 LFL1 "B3 domain-containing protein LFL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P37398 VP1 "B3 domain-containing protein VP1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2032170 LEC2 "LEAFY COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093166 ABI3 "AT3G24650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 2e-22
pfam0236297 pfam02362, B3, B3 DNA binding domain 4e-20
smart0101996 smart01019, B3, B3 DNA binding domain 2e-17
pfam0749650 pfam07496, zf-CW, CW-type Zinc Finger 2e-12
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 2e-08
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information 
 Score = 92.0 bits (229), Expect = 2e-22
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)

Query: 140 PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNN 199
           PLF K+L+ SD   +GRLVLPKK A+A+ PP    EG+ + ++D  GK+W  + +   N+
Sbjct: 1   PLFFKVLTPSDVSSLGRLVLPKKFAKAHLPP---KEGVEVTLEDPDGKKWTVKLKKRKNS 57

Query: 200 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 241
             RM +  G    ++   L+ GD + F       K  +   +
Sbjct: 58  G-RMVLSGGWKEFVRANGLKEGDFLVFELDGRNSKFKVRIFR 98

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 691
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.65
PF0749650 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi 99.6
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 98.15
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 97.59
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information 
Probab=99.65  E-value=6.7e-16  Score=132.59  Aligned_cols=98  Identities=24%  Similarity=0.437  Sum_probs=70.0

Q ss_pred             EEEecccccCCCCCcEEeehhcccccCCCCCCCCCceEEEEeCCCCeEEEEEEEeCCCCCccccc-cCchhhhhccCCCC
Q 005562          142 FEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVL-EGVTPCIQNMQLQA  220 (691)
Q Consensus       142 F~KvLT~SDVgklgRLVIPK~~AE~~FPpL~~~~G~~L~v~D~~GK~W~FRfsyw~nn~SR~YVL-~GWs~FVrsK~Lqa  220 (691)
                      |.|+|+++|+....+|+||++.++.|.  +....++.|.++|..|+.|.+++.++. +..+ |+| .||..||++++|++
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~~--~~~~~~~~v~l~~~~g~~W~v~~~~~~-~~~~-~~l~~GW~~Fv~~n~L~~   76 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKHG--GNKRKSREVTLKDPDGRSWPVKLKYRK-NSGR-YYLTGGWKKFVRDNGLKE   76 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTTS----SS--CEEEEEETTTEEEEEEEEEEC-CTTE-EEEETTHHHHHHHCT--T
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHhC--CCcCCCeEEEEEeCCCCEEEEEEEEEc-cCCe-EEECCCHHHHHHHcCCCC
Confidence            899999999998889999999999982  112357899999999999999999883 3333 566 69999999999999


Q ss_pred             CCEEEEEEec-CCCeEEEEEEecC
Q 005562          221 GDIVTFSRLE-PEGKLVMGFRKAS  243 (691)
Q Consensus       221 GDtVvF~R~e-~~GkL~IGVRRa~  243 (691)
                      ||+|+|+... ...++.|.+.|++
T Consensus        77 GD~~~F~~~~~~~~~~~v~i~~~~  100 (100)
T PF02362_consen   77 GDVCVFELIGNSNFTLKVHIFRKS  100 (100)
T ss_dssp             T-EEEEEE-SSSCE-EEEEEE---
T ss_pred             CCEEEEEEecCCCceEEEEEEECc
Confidence            9999999975 3446799998863

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 7e-14
2l7p_A100 Ashh2 A Cw Domain Length = 100 2e-04
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 73/116 (62%), Gaps = 10/116 (8%)
Query: 141 LFEKMLSASDAGRIGRLVLPKKCAEAYFP-PISQ--PEGLPLKVQDSKGKEWIFQFRFWP 197
           LFEK ++ SD G++ RLV+PK  AE +FP P S    +G+ L  +D  GK W F++ +W 
Sbjct: 13  LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW- 71
Query: 198 NNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLEPEG-KLVMGFRKASSASASDQD 251
            N+S+ YVL +G +  ++   L+AGD+V+FSR   +  +L +G++   S S SD D
Sbjct: 72  -NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWK---SRSGSDLD 123
>pdb|2L7P|A Chain A, Ashh2 A Cw Domain Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 2e-27
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 2e-15
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 4e-14
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  106 bits (266), Expect = 2e-27
 Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 7/123 (5%)

Query: 131 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPIS---QPEGLPLKVQDSKGK 187
           SG S      LFEK ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK
Sbjct: 3   SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGK 62

Query: 188 EWIFQFRFWPNNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSA 245
            W F++ +W  N+S+ YVL +G +  ++   L+AGD+V+FSR    + +L +G++  S +
Sbjct: 63  VWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 120

Query: 246 SAS 248
              
Sbjct: 121 DLD 123
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100 Back     alignment and structure
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 691
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 6e-30
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 2e-22
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 6e-13
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  111 bits (280), Expect = 6e-30
 Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 139 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRF 195
             LFEK ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK W F++ +
Sbjct: 4   EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSY 63

Query: 196 WPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPE-GKLVMGFRKASSAS 246
           W ++ S +   +G +  ++   L+AGD+V+FSR   +  +L +G++  S + 
Sbjct: 64  WNSSQSYVL-TKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 114
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query691
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.9
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.64
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.26
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=3.1e-23  Score=172.31  Aligned_cols=109  Identities=38%  Similarity=0.727  Sum_probs=94.8

Q ss_pred             CCCCEEEEECCCCCCCCCCCEEEEHHCCCCCCCCCCC---CCCCEEEEEECCCCEEEEEEEEECCCCCCCCCC-CCCHHH
Q ss_conf             4133089844425689999477300002014999999---999229999599993999999908999756001-382125
Q 005562          137 VITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVL-EGVTPC  212 (691)
Q Consensus       137 ~~~~LFeKvLT~SDVgklgRLVIPK~~AE~~FPpL~~---~~Gi~L~V~D~~GK~W~FRfsyw~nn~SR~YVL-tGWs~F  212 (691)
                      ...++|+|+||+|||++.+||+||+.+|++|||+++.   .+++.|.+.|..|++|.|+|++|.  +.+.|++ .||..|
T Consensus         2 ~~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~--~~~~~~l~~GW~~F   79 (117)
T d1wida_           2 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN--SSQSYVLTKGWSRF   79 (117)
T ss_dssp             CCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEET--TTTEEEEESSHHHH
T ss_pred             CCCEEEEEEECCHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEC--CCCCEEEECCHHHH
T ss_conf             8764799991112008988899778999973895434567770799999599999999999988--99834774577998


Q ss_pred             HHCCCCCCCCEEEEEEECC-CCEEEEEEEECCCCCC
Q ss_conf             3116888898899997459-9819999996689888
Q 005562          213 IQNMQLQAGDIVTFSRLEP-EGKLVMGFRKASSASA  247 (691)
Q Consensus       213 VKsK~LkaGDtVvF~R~e~-~GkL~IGVRRa~~~~~  247 (691)
                      |++++|++||+|+|++.+. +++|+|++||+.....
T Consensus        80 v~~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~~~  115 (117)
T d1wida_          80 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSDL  115 (117)
T ss_dssp             HHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCSS
T ss_pred             HHHCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCC
T ss_conf             887499979999999981899889999999999999
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure