BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005564
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G38|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein
Reveals The Mechanism For Coordinated Electron And
Proton Transfer
Length = 570
Score = 310 bits (793), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 193/570 (33%), Positives = 293/570 (51%), Gaps = 54/570 (9%)
Query: 77 IKEQSNFIRYPLNEELLTDAPNVNESATQ--------LIKFHGSYQQYNRDERGAKS--- 125
+K +SN++R + E+L N+ T LI+FHG YQQ +RD R ++
Sbjct: 21 MKHESNYLRGTIAEDL-------NDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQK 73
Query: 126 ----YSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GXXXXXXXXXXXXHGVLKKDLKTV 180
++ +LR + P G ++ + + +D A + I G HG+LKK++K V
Sbjct: 74 LEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPV 133
Query: 181 MRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMW 239
++ S+G L D+NRNVL P + + A + A+ I+ L P++ Y ++W
Sbjct: 134 -HQMLHSVGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIW 192
Query: 240 VDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILT 299
+D E++ T + EPI G +LPRKFK V +P N +D+
Sbjct: 193 LDQEKVATTDE--------------------EPILGQTYLPRKFKTTVVIPPQNDIDLHA 232
Query: 300 NDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVV 359
ND+ V ++ ENG+ GFNL VGGG+ H + T+ R + GY+P E L +A+V
Sbjct: 233 NDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVT 291
Query: 360 TQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQ 419
TQR+ G R DRK ++ KY + G+E F++ VE+ G KFEP R +GW +
Sbjct: 292 TQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKG 351
Query: 420 GDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPI 475
D L ++NGRI A +K L EI + + + RIT NQN+I+ + ++ K I
Sbjct: 352 IDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKI 411
Query: 476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKY 535
++GL+ V P +MAC S P CPLA+ EAER +P + I + K G+
Sbjct: 412 EKIAKESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS- 468
Query: 536 NESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELE 595
+E +V+RVTGCPNGC R +AE+GLVG P Y + LGG T + R + + E+
Sbjct: 469 DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEIL 528
Query: 596 KVFEPLFYYWKQKRQTKDESFGDFTNRMGF 625
+ L W ++R+ E FGDFT R G
Sbjct: 529 ASLDELIGRWAKEREA-GEGFGDFTVRAGI 557
>pdb|4G39|A Chain A, Mutational Analysis Of Sulfite Reductase Hemoprotein
Reveals The Mechanism For Coordinated Electron And
Proton Transfer
Length = 570
Score = 308 bits (790), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 192/570 (33%), Positives = 292/570 (51%), Gaps = 54/570 (9%)
Query: 77 IKEQSNFIRYPLNEELLTDAPNVNESATQ--------LIKFHGSYQQYNRDERGAKS--- 125
+K +SN++R + E+L N+ T LI+FHG YQQ +RD R ++
Sbjct: 21 MKHESNYLRGTIAEDL-------NDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQK 73
Query: 126 ----YSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GXXXXXXXXXXXXHGVLKKDLKTV 180
++ +LR + P G ++ + + +D A + I G HG+LKK++K V
Sbjct: 74 LEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPV 133
Query: 181 MRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMW 239
++ S+G L D+N NVL P + + A + A+ I+ L P++ Y ++W
Sbjct: 134 -HQMLHSVGLDALATANDMNSNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIW 192
Query: 240 VDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILT 299
+D E++ T + EPI G +LPRKFK V +P N +D+
Sbjct: 193 LDQEKVATTDE--------------------EPILGQTYLPRKFKTTVVIPPQNDIDLHA 232
Query: 300 NDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVV 359
ND+ V ++ ENG+ GFNL VGGG+ H + T+ R + GY+P E L +A+V
Sbjct: 233 NDMNFVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVT 291
Query: 360 TQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQ 419
TQR+ G R DRK ++ KY + G+E F++ VE+ G KFEP R +GW +
Sbjct: 292 TQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKG 351
Query: 420 GDGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPI 475
D L ++NGRI A +K L EI + + + RIT NQN+I+ + ++ K I
Sbjct: 352 IDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKI 411
Query: 476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKY 535
++GL+ V P +MAC S P CPLA+ EAER +P + I + K G+
Sbjct: 412 EKIAKESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS- 468
Query: 536 NESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELE 595
+E +V+RVTGCPNGC R +AE+GLVG P Y + LGG T + R + + E+
Sbjct: 469 DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEIL 528
Query: 596 KVFEPLFYYWKQKRQTKDESFGDFTNRMGF 625
+ L W ++R+ E FGDFT R G
Sbjct: 529 ASLDELIGRWAKEREA-GEGFGDFTVRAGI 557
>pdb|1AOP|A Chain A, Sulfite Reductase Structure At 1.6 Angstrom Resolution
pdb|2AOP|A Chain A, Sulfite Reductase: Reduced With Crii Edta, Siroheme Feii,
[4fe-4s] +1, Phosphate Bound
pdb|2GEP|A Chain A, Sulfite Reductase Hemoprotein, Oxidized, Siroheme Feiii
[4fe-4s] +2, Sulfite Complex
pdb|3AOP|A Chain A, Sulfite Reductase Hemoprotein Photoreduced With Proflavine
Edta, Siroheme Feii,[4fe-4s] +1, Phosphate Bound
pdb|3GEO|A Chain A, Sulfite Reductase Hemoprotein Nitrite Complex
pdb|4AOP|A Chain A, Sulfite Reductase Hemoprotein Partially Photoreduced With
Proflavine Edta, Phosphate Partially Bound
pdb|4GEP|A Chain A, Sulfite Reductase Hemoprotein Cyanide Complex Reduced With
Crii Edta
pdb|5AOP|A Chain A, Sulfite Reductase Structure Reduced With Crii Edta,
5-Coordinate Siroheme, Siroheme Feii, [4fe-4s] +1
pdb|5GEP|A Chain A, Sulfite Reductase Hemoprotein Carbon Monoxide Complex
Reduced With Crii Edta
pdb|6GEP|A Chain A, Sulfite Reductase Hemoprotein Nitric Oxide Complex Reduced
With Proflavine Edta
pdb|7GEP|A Chain A, Sulfite Reductase Hemoprotein In Complex With A Partially
Oxidized Sulfide Species
pdb|8GEP|A Chain A, Sulfite Reductase Hemoprotein Nitrate Complex
Length = 497
Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 176/509 (34%), Positives = 266/509 (52%), Gaps = 38/509 (7%)
Query: 126 YSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GXXXXXXXXXXXXHGVLKKDLKTVMRSI 184
++ +LR + P G ++ + + +D A + I G HG+LKK++K V +
Sbjct: 5 HAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPV-HQM 63
Query: 185 IRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGE 243
+ S+G L D+NRNVL P + + A + A+ I+ L P++ Y ++W+D E
Sbjct: 64 LHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQE 123
Query: 244 QIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIG 303
++ T + EPI G +LPRKFK V +P N +D+ ND+
Sbjct: 124 KVATTDE--------------------EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMN 163
Query: 304 VVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRE 363
V ++ ENG+ GFNL VGGG+ H + T+ R + GY+P E L +A+V TQR+
Sbjct: 164 FVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRD 222
Query: 364 NGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFK---SHLGWHEQG 420
G R DRK ++ KY + G+E F++ VE+ G KFEP R +EF +GW +
Sbjct: 223 WGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRP---YEFTGRGDRIGWVKGI 279
Query: 421 DGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPIT 476
D L ++NGRI A +K L EI + + + RIT NQN+I+ + ++ K I
Sbjct: 280 DDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIE 339
Query: 477 TALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYN 536
++GL+ V P +MAC S P CPLA+ EAER +P + I + K G+ +
Sbjct: 340 KIAKESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS-D 396
Query: 537 ESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEK 596
E +V+RVTGCPNGC R +AE+GLVG P Y + LGG T + R + + E+
Sbjct: 397 EHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILA 456
Query: 597 VFEPLFYYWKQKRQTKDESFGDFTNRMGF 625
+ L W ++R+ E FGDFT R G
Sbjct: 457 SLDELIGRWAKEREA-GEGFGDFTVRAGI 484
>pdb|4HTR|A Chain A, N149w Variant Of Sirhp Bound To Sulfite
Length = 507
Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 176/509 (34%), Positives = 266/509 (52%), Gaps = 38/509 (7%)
Query: 126 YSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GXXXXXXXXXXXXHGVLKKDLKTVMRSI 184
++ +LR + P G ++ + + +D A + I G HG+LKK++K V +
Sbjct: 15 HAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPV-HQM 73
Query: 185 IRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGE 243
+ S+G L D+NRNVL P + + A + A+ I+ L P++ Y ++W+D E
Sbjct: 74 LHSVGLDALATAWDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQE 133
Query: 244 QIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIG 303
++ T + EPI G +LPRKFK V +P N +D+ ND+
Sbjct: 134 KVATTDE--------------------EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMN 173
Query: 304 VVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRE 363
V ++ ENG+ GFNL VGGG+ H + T+ R + GY+P E L +A+V TQR+
Sbjct: 174 FVAIA-ENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRD 232
Query: 364 NGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFK---SHLGWHEQG 420
G R DRK ++ KY + G+E F++ VE+ G KFEP R +EF +GW +
Sbjct: 233 WGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRP---YEFTGRGDRIGWVKGI 289
Query: 421 DGGLFCGLHVDNGRI----AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPIT 476
D L ++NGRI A +K L EI + + + RIT NQN+I+ + ++ K I
Sbjct: 290 DDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIE 349
Query: 477 TALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYN 536
++GL+ V P +MAC S P CPLA+ EAER +P + I + K G+ +
Sbjct: 350 KIAKESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS-D 406
Query: 537 ESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEK 596
E +V+RVTGCPNGC R +AE+GLVG P Y + LGG T + R + + E+
Sbjct: 407 EHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILA 466
Query: 597 VFEPLFYYWKQKRQTKDESFGDFTNRMGF 625
+ L W ++R+ E FGDFT R G
Sbjct: 467 SLDELIGRWAKEREA-GEGFGDFTVRAGI 494
>pdb|1ZJ8|A Chain A, Structure Of Mycobacterium Tuberculosis Nira Protein
pdb|1ZJ8|B Chain B, Structure Of Mycobacterium Tuberculosis Nira Protein
pdb|1ZJ9|A Chain A, Structure Of Mycobacterium Tuberculosis Nira Protein
pdb|1ZJ9|B Chain B, Structure Of Mycobacterium Tuberculosis Nira Protein
Length = 566
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 125/515 (24%), Positives = 214/515 (41%), Gaps = 99/515 (19%)
Query: 128 FMLRTKNPCGKVSNQLYLTMDDLADQFGIGXXXXXXXXXXXXHGVLKKDLKTVMRSIIRS 187
FM+R + G +S T+ ++ +F H + +++ + R +
Sbjct: 105 FMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRLDDV 164
Query: 188 MGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMT 247
T ACGD R VL P E++ +L P T
Sbjct: 165 GLQTTEACGDCPRVVLGSPL------------AGESLDEVLDP----------------T 196
Query: 248 AEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVV 307
E+V+ PD + LPRK+K A++ D + +I ND+ + V
Sbjct: 197 WAIEEIVRRY------IGKPDFAD-------LPRKYKTAISGLQDVAHEI--NDVAFIGV 241
Query: 308 SDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGR 366
+ P G +L+VGGG+ +T P L +++G +VP ++ A+ R+ G
Sbjct: 242 NHPEHGP-GLDLWVGGGL-------STNPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGY 293
Query: 367 RDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFK----SHLGWHEQGDG 422
R R +R+K+LI WGI KFR V+E Y K+ P P E H+G +G
Sbjct: 294 RRLRAKARLKFLIKDWGIAKFREVLETEYLKR--PLIDGPAPEPVKHPIDHVGVQRLKNG 351
Query: 423 GLFCGLHVDNGRIAGKMKKTLREIIEKYNLN-VRITPNQNIILCDIRKAWKRPITTALAQ 481
G+ GR++G + + +++ + + +R TP Q +++ DI A + L
Sbjct: 352 LNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDA 411
Query: 482 AGLL-LPRYVDPLNITAMACPSLPLCPLAITE----AERGIPDILKRIRAVFEKVGLKYN 536
GL P + MAC + C L+ E A+ +P++ +R+ E + + +
Sbjct: 412 LGLQSRPSH---WRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRL----EDINSQLD 464
Query: 537 ESVVIRVTGCPNGCARPYMAELG----LVGDGPN----SYQIWLGGTHNQTTLARTFMNK 588
+ + + GCPN CAR +A++G ++ DG +Q+ LGG L F K
Sbjct: 465 VPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGG---HLGLDAGFGRK 521
Query: 589 VKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRM 623
+ +Q + T DE GD+ +R+
Sbjct: 522 L----------------RQHKVTSDE-LGDYIDRV 539
>pdb|3B0H|A Chain A, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
pdb|3B0H|B Chain B, Assimilatory Nitrite Reductase (Nii4) From Tobbaco Root
Length = 588
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 115/417 (27%), Positives = 177/417 (42%), Gaps = 56/417 (13%)
Query: 170 HGVLKKDLKTVMRSIIRSMGSTLGACGDLN-------RNVLAPPAPLVRKDYLFAQKTAE 222
+GV + S+IR G C D+ R V+ P P + K
Sbjct: 140 NGVTTSSQTRYLASVIRKYGKD--GCADVTTRQNWQIRGVVLPDVPEILKGL-------- 189
Query: 223 NIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARN-----DNSHGTNFPDSPEPIYGTQ 277
+ L + QSG G + +P E+V R NF +P
Sbjct: 190 DEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSQYVTANFRGNP----AVT 245
Query: 278 FLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPR 337
LPRK+ V V D ND+ + + + GFNL VGG R P
Sbjct: 246 NLPRKWNVCVIGSHDLYEHPQINDLAYMPATKDGR--FGFNLLVGGFFS-PKRCAEAVP- 301
Query: 338 LGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRS-VVEQYYG 396
+VP +D++ KAI+ R+ G R +R+ +RM +L+ G+E FR+ VV++
Sbjct: 302 ---LDAWVPADDVVPVCKAILEAYRDLGTRGNRQKTRMMWLVDELGVEGFRAEVVKRMPQ 358
Query: 397 KKF--EPFRQL--PEWEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYN 451
+K E L +WE + +LG H Q G F GLH+ GR+ L + ++Y
Sbjct: 359 QKLDRESTEDLVQKQWERREYLGVHPQKQEGYSFVGLHIPVGRVQADDMDELARLADEYG 418
Query: 452 L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRY-VDP--LNITAMACPSLPLCP 507
+R+T QNII+ +++ + AL LL R+ DP L +AC C
Sbjct: 419 SGELRLTVEQNIIIPNVKNS----KIEALLNEPLLKNRFSTDPPILMKNLVACTGNQFCG 474
Query: 508 LAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRV--TGCPNGCARPYMAELGLVG 562
AI E + R + E+V L + + +R+ TGCPN CA+ +A++G +G
Sbjct: 475 KAIIETK-------ARSMKITEEVQLLVSITQPVRMHWTGCPNSCAQVQVADIGFMG 524
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 174/411 (42%), Gaps = 45/411 (10%)
Query: 170 HGVLKKDLKTVMRSIIRSMGSTLGACGDLN-------RNVLAPPAPLVRKDYLFAQKTAE 222
+GV + S+IR G C D+ R V+ P P + K AE
Sbjct: 143 NGVTTSAQTRYLASVIRKYGKE--GCADITTRQNWQIRGVVLPDVPEILKGL------AE 194
Query: 223 NIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNF-PDSPEPIYGTQFLPR 281
L + QSG G + +P E+V R + + F + LPR
Sbjct: 195 --VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPR 252
Query: 282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQ 341
K+K V D ND+ + + + GFNL VGG R + P
Sbjct: 253 KWKPCVVGSHDLYEHPHINDLAYMPATKDGR--FGFNLLVGGFFS-AKRCDEAIP----L 305
Query: 342 LGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEP 401
+VP +D++ +AI+ R+ G R +R+ RM +LI G+E FR+ VE+ ++ +
Sbjct: 306 DAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQ-QL 364
Query: 402 FRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-N 453
R PE WE + +LG H Q G F GLH+ GR+ L + ++Y
Sbjct: 365 ERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGE 424
Query: 454 VRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDP--LNITAMACPSLPLCPLAIT 511
+R+T QNII+ +I + AL + +L DP L +AC C AI
Sbjct: 425 IRLTVEQNIIIPNIETS----KIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAII 480
Query: 512 EAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
E + LK V +V L + V + TGCPN CA+ +A++G +G
Sbjct: 481 ETK---ARSLKITEEVQRQVSL--TKPVRMHWTGCPNTCAQVQVADIGFMG 526
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 117/465 (25%), Positives = 187/465 (40%), Gaps = 74/465 (15%)
Query: 109 FHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GXXXXXXXXXX 167
FH QY R FM+R K P G ++ + + ++G G
Sbjct: 125 FHRRKNQYGR---------FMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNW 175
Query: 168 XXHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAAL 227
GV+ D+ +++ + ++L + GD RN + P + + + + N+ +
Sbjct: 176 QIRGVVLPDVPEILKGLAEVGLTSLQSGGDNVRNPVGNPLAGIDPEEIVDTRPYTNLLS- 234
Query: 228 LTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAV 287
Q +T NS G LPRK+ V
Sbjct: 235 ----------------QFITG-----------NSRGNP---------AVSNLPRKWNPCV 258
Query: 288 TVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPK 347
D ND+ + + + GFNL VGG R + P +VP
Sbjct: 259 VGSHDLYEHPHINDLAYMPATKDGR--FGFNLLVGGFFS-AKRCDEAIP----LDAWVPA 311
Query: 348 EDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPE 407
+D++ +AI+ R+ G R +R+ RM +LI G+E FR+ VE+ ++ + R PE
Sbjct: 312 DDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQ-QLERASPE 370
Query: 408 ------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPN 459
WE + +LG H Q G F GLH+ GR+ L + ++Y +R+T
Sbjct: 371 DLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVE 430
Query: 460 QNIILCDIRKAWKRPITTALAQAGLLLPRYVDP--LNITAMACPSLPLCPLAITEAERGI 517
QNII+ +I + AL + +L DP L +AC C AI E +
Sbjct: 431 QNIIIPNIETS----KIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETK--- 483
Query: 518 PDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
LK V +V L + V + TGCPN CA+ +A++G +G
Sbjct: 484 ARSLKITEEVQRQVSL--TKPVRMHWTGCPNTCAQVQVADIGFMG 526
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 173/411 (42%), Gaps = 45/411 (10%)
Query: 170 HGVLKKDLKTVMRSIIRSMGSTLGACGDLN-------RNVLAPPAPLVRKDYLFAQKTAE 222
+GV + S+IR G C D+ R V+ P P + K AE
Sbjct: 143 NGVTTSAQTRYLASVIRKYGKE--GCADITTRQNWQIRGVVLPDVPEILKGL------AE 194
Query: 223 NIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNF-PDSPEPIYGTQFLPR 281
L + QSG G + +P E+V R + + F + LPR
Sbjct: 195 --VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPR 252
Query: 282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQ 341
K+ V D ND+ + + + GFNL VGG R + P
Sbjct: 253 KWNPCVVGSHDLYEHPHINDLAYMPATKDGR--FGFNLLVGGFFS-AKRCDEAIP----L 305
Query: 342 LGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEP 401
+VP +D++ +AI+ R+ G R +R+ RM +LI G+E FR+ VE+ ++ +
Sbjct: 306 DAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQ-QL 364
Query: 402 FRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-N 453
R PE WE + +LG H Q G F GLH+ GR+ L + ++Y
Sbjct: 365 ERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGE 424
Query: 454 VRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDP--LNITAMACPSLPLCPLAIT 511
+R+T QNII+ +I + AL + +L DP L +AC C AI
Sbjct: 425 IRLTVEQNIIIPNIETS----KIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGKAII 480
Query: 512 EAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
E + LK V +V L + V + TGCPN CA+ +A++G +G
Sbjct: 481 ETK---ARSLKITEEVQRQVSL--TKPVRMHWTGCPNTCAQVQVADIGFMG 526
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 114/411 (27%), Positives = 173/411 (42%), Gaps = 45/411 (10%)
Query: 170 HGVLKKDLKTVMRSIIRSMGSTLGACGDLN-------RNVLAPPAPLVRKDYLFAQKTAE 222
+GV + S+IR G C D+ R V+ P P + K AE
Sbjct: 143 NGVTTSAQTRYLASVIRKYGKE--GCADITTRQNWQIRGVVLPDVPEILKGL------AE 194
Query: 223 NIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNF-PDSPEPIYGTQFLPR 281
L + QSG G + +P E+V R + + F + LPR
Sbjct: 195 --VGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPR 252
Query: 282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQ 341
K+ V D ND+ + + + GFNL VGG R + P
Sbjct: 253 KWNPCVVGSHDLYEHPHINDLAYMPATKDGR--FGFNLLVGGFFS-AKRCDEAIP----L 305
Query: 342 LGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEP 401
+VP +D++ +AI+ R+ G R +R+ RM +LI G+E FR+ VE+ ++ +
Sbjct: 306 DAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQ-QL 364
Query: 402 FRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYNL-N 453
R PE WE + +LG H Q G F GLH+ GR+ L + ++Y
Sbjct: 365 ERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGE 424
Query: 454 VRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDP--LNITAMACPSLPLCPLAIT 511
+R+T QNII+ +I + AL + +L DP L +AC C AI
Sbjct: 425 IRLTVEQNIIIPNIETS----KIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAII 480
Query: 512 EAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
E + LK V +V L + V + TGCPN CA+ +A++G +G
Sbjct: 481 ETK---ARSLKITEEVQRQVSL--TKPVRMHWTGCPNTCAQVQVADIGFMG 526
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 135/294 (45%), Gaps = 27/294 (9%)
Query: 279 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRL 338
LPRK+ V D ND+ + + + GFNL VGG R + P
Sbjct: 250 LPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGR--FGFNLLVGGFFS-AKRCDEAIPLD 306
Query: 339 GEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKK 398
+VP +D++ +AI+ R+ G R +R+ RM +LI G+E FR+ VE+ ++
Sbjct: 307 A----WVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQ 362
Query: 399 FEPFRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYN 451
+ R PE WE + +LG H Q G F GLH+ GR+ L + ++Y
Sbjct: 363 -QLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYG 421
Query: 452 L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDP--LNITAMACPSLPLCPL 508
+R+T QNII+ +I + AL + +L DP L +AC C
Sbjct: 422 SGEIRLTVEQNIIIPNIETS----KIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQ 477
Query: 509 AITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
AI E + LK V +V L + V + TGCPN CA+ +A++G +G
Sbjct: 478 AIIETK---ARSLKITEEVQRQVSL--TKPVRMHWTGCPNTCAQVQVADIGFMG 526
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 135/294 (45%), Gaps = 27/294 (9%)
Query: 279 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRL 338
LPRK+ V D ND+ + + + GFNL VGG R + P
Sbjct: 250 LPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGR--FGFNLLVGGFFS-AKRCDEAIP-- 304
Query: 339 GEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKK 398
+VP +D++ +AI+ R+ G R +R+ RM +LI G+E FR+ VE+ ++
Sbjct: 305 --LDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQ 362
Query: 399 FEPFRQLPE------WEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYN 451
+ R PE WE + +LG H Q G F GLH+ GR+ L + ++Y
Sbjct: 363 -QLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYG 421
Query: 452 L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDP--LNITAMACPSLPLCPL 508
+R+T QNII+ +I + AL + +L DP L +AC C
Sbjct: 422 SGEIRLTVEQNIIIPNIETS----KIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQ 477
Query: 509 AITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
AI E + LK V +V L + V + TGCPN CA+ +A++G +G
Sbjct: 478 AIIETK---ARSLKITEEVQRQVSL--TKPVRMHWTGCPNTCAQVQVADIGFMG 526
>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase
Length = 608
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 135/295 (45%), Gaps = 28/295 (9%)
Query: 279 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRL 338
LPRK+ V D ND+ + + +NG+ GFNL VGG R E P
Sbjct: 267 LPRKWNPCVIGSHDLYEHPHINDLAYMPAT-KNGK-FGFNLLVGGFFS-IKRCEEAIP-- 321
Query: 339 GEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKK 398
+V ED++ KA++ R+ G R +R+ RM +LI G+E FR VE+ ++
Sbjct: 322 --LDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRMPEQ 379
Query: 399 F------EPFRQLPEWEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKYN 451
E Q +WE + +LG H Q GL F GLH+ GR+ + L I + Y
Sbjct: 380 VLERASSEELVQ-KDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYG 438
Query: 452 L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYV--DPLNITAM-ACPSLPLCP 507
+R+T QNII+ ++ + +L LL RY P+ + + AC C
Sbjct: 439 SGELRLTVEQNIIIPNVENS----KIDSLLNEPLLKERYSPEPPILMKGLVACTGSQFCG 494
Query: 508 LAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG 562
AI E + + + ++ + + V + TGCPN C + +A++G +G
Sbjct: 495 QAIIETKARALKVTEEVQRL-----VSVTRPVRMHWTGCPNSCGQVQVADIGFMG 544
>pdb|4I19|A Chain A, The Crystal Structure Of An Epoxide Hydrolase From
Streptomyces Carzinostaticus Subsp. Neocarzinostaticus
Length = 388
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 391 VEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCG-----LHVDNGRIAGKMKKTL 443
V Y G F+P R L E +FK + W E GG F L VD+ R + K L
Sbjct: 331 VAVYPGALFQPVRSLAERDFKQIVHWAELDRGGHFSAXEEPDLFVDDLRTFNRTLKKL 388
>pdb|4EO2|A Chain A, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|B Chain B, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|C Chain C, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|D Chain D, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|E Chain E, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EO2|F Chain F, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|A Chain A, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|B Chain B, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|C Chain C, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|D Chain D, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|E Chain E, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|F Chain F, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|G Chain G, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|H Chain H, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|I Chain I, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|J Chain J, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|K Chain K, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
pdb|4EP0|L Chain L, Structure Of The Bacteriophage C1 Tail Knob Protein, Gp12
Length = 583
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 9 NTVIPNNPNIRIRSFNGLKPSHSLSIRTNLRAFPVPY 45
NTV+ N+ +++ R FN + S LSI++ L F Y
Sbjct: 407 NTVLDNDASVKDRLFNAISLSGGLSIKSALSGFNNEY 443
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,156,686
Number of Sequences: 62578
Number of extensions: 861379
Number of successful extensions: 2058
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1994
Number of HSP's gapped (non-prelim): 22
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)