Query 005564
Match_columns 691
No_of_seqs 453 out of 2450
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 01:27:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00178 sulfite reductase 100.0 1E-139 3E-144 1198.3 61.5 593 44-639 28-620 (623)
2 TIGR02042 sir ferredoxin-sulfi 100.0 1E-130 3E-135 1118.8 57.4 565 69-635 4-577 (577)
3 KOG0560 Sulfite reductase (fer 100.0 8E-128 2E-132 1014.4 37.6 600 20-636 26-634 (638)
4 PRK13504 sulfite reductase sub 100.0 6E-119 1E-123 1027.3 55.6 543 68-633 8-563 (569)
5 TIGR02041 CysI sulfite reducta 100.0 5E-111 1E-115 956.3 52.7 528 75-626 1-541 (541)
6 PRK09567 nirA ferredoxin-nitri 100.0 4E-107 9E-112 930.7 54.5 502 68-635 62-589 (593)
7 COG0155 CysI Sulfite reductase 100.0 1E-102 3E-107 867.0 42.0 491 70-624 6-501 (510)
8 PLN02431 ferredoxin--nitrite r 100.0 3.9E-98 9E-103 851.3 52.4 481 69-608 73-584 (587)
9 PRK09566 nirA ferredoxin-nitri 100.0 8.4E-95 1.8E-99 819.8 49.3 483 68-610 9-510 (513)
10 TIGR02435 CobG precorrin-3B sy 100.0 4.1E-75 8.9E-80 639.1 40.3 366 127-568 17-390 (390)
11 PRK14989 nitrite reductase sub 100.0 5.2E-46 1.1E-50 441.6 26.3 297 372-689 493-814 (847)
12 TIGR02374 nitri_red_nirB nitri 100.0 9.4E-43 2E-47 413.4 25.3 279 372-672 482-784 (785)
13 TIGR02066 dsrB sulfite reducta 100.0 3.3E-41 7.2E-46 362.1 18.2 233 104-393 6-313 (341)
14 PRK09566 nirA ferredoxin-nitri 100.0 2.4E-37 5.2E-42 351.0 27.1 272 411-684 51-377 (513)
15 COG2221 DsrA Dissimilatory sul 100.0 1.5E-37 3.3E-42 321.2 22.4 222 110-395 20-295 (317)
16 TIGR02066 dsrB sulfite reducta 100.0 5.2E-38 1.1E-42 337.4 19.3 210 420-634 27-313 (341)
17 COG2221 DsrA Dissimilatory sul 100.0 3.3E-37 7.2E-42 318.7 21.4 220 411-637 17-296 (317)
18 TIGR02374 nitri_red_nirB nitri 100.0 2.5E-37 5.3E-42 367.2 23.1 206 123-393 549-756 (785)
19 TIGR02912 sulfite_red_C sulfit 100.0 3E-37 6.5E-42 330.2 19.5 229 103-393 3-298 (314)
20 TIGR02064 dsrA sulfite reducta 100.0 1.9E-36 4.2E-41 330.1 20.7 269 71-391 10-366 (402)
21 PLN02431 ferredoxin--nitrite r 100.0 6.8E-36 1.5E-40 341.2 26.0 272 411-684 121-451 (587)
22 PRK13504 sulfite reductase sub 100.0 7.2E-36 1.6E-40 342.6 26.0 266 411-680 48-408 (569)
23 PRK14989 nitrite reductase sub 100.0 2.9E-36 6.2E-41 358.6 22.3 206 123-393 560-770 (847)
24 TIGR02435 CobG precorrin-3B sy 100.0 3.1E-35 6.8E-40 323.4 26.0 254 419-685 14-313 (390)
25 PRK09567 nirA ferredoxin-nitri 100.0 1.4E-34 3E-39 332.4 27.3 270 411-684 102-430 (593)
26 TIGR02041 CysI sulfite reducta 100.0 2.4E-34 5.1E-39 328.0 27.4 253 423-677 61-389 (541)
27 TIGR02064 dsrA sulfite reducta 100.0 1.7E-34 3.7E-39 314.9 20.4 208 421-632 79-366 (402)
28 PLN00178 sulfite reductase 100.0 9.4E-34 2E-38 325.6 26.7 270 411-684 89-463 (623)
29 TIGR02042 sir ferredoxin-sulfi 100.0 2.5E-33 5.4E-38 320.6 25.7 266 411-678 42-416 (577)
30 COG1251 NirB NAD(P)H-nitrite r 100.0 2.5E-33 5.5E-38 314.6 16.0 281 371-675 482-786 (793)
31 TIGR02912 sulfite_red_C sulfit 100.0 2.2E-32 4.8E-37 292.7 19.1 213 414-634 10-298 (314)
32 COG0155 CysI Sulfite reductase 100.0 5.1E-30 1.1E-34 286.3 23.7 266 412-683 45-361 (510)
33 PF01077 NIR_SIR: Nitrite and 100.0 2.6E-29 5.7E-34 242.8 9.9 153 195-399 1-157 (157)
34 PF01077 NIR_SIR: Nitrite and 100.0 5.5E-29 1.2E-33 240.6 10.9 145 491-638 2-155 (157)
35 COG1251 NirB NAD(P)H-nitrite r 99.9 1.3E-23 2.7E-28 236.8 15.0 203 124-392 549-753 (793)
36 KOG0560 Sulfite reductase (fer 99.9 4.4E-21 9.6E-26 204.8 16.3 267 412-682 118-477 (638)
37 PF03460 NIR_SIR_ferr: Nitrite 99.6 6.4E-16 1.4E-20 128.8 6.5 59 126-184 8-66 (69)
38 PF03460 NIR_SIR_ferr: Nitrite 99.5 3.2E-14 6.9E-19 118.6 6.2 66 417-482 1-69 (69)
39 PRK00366 ispG 4-hydroxy-3-meth 99.3 1.1E-11 2.5E-16 131.2 14.1 156 409-607 201-358 (360)
40 PRK00366 ispG 4-hydroxy-3-meth 98.5 7E-07 1.5E-11 95.3 10.9 110 174-361 246-356 (360)
41 COG0821 gcpE 1-hydroxy-2-methy 97.9 0.00016 3.4E-09 76.6 14.3 161 409-611 194-356 (361)
42 TIGR00612 ispG_gcpE 1-hydroxy- 97.9 0.00011 2.5E-09 78.0 12.1 151 409-601 192-344 (346)
43 PF04551 GcpE: GcpE protein; 97.7 9.3E-05 2E-09 79.4 7.3 124 451-605 234-358 (359)
44 PLN02925 4-hydroxy-3-methylbut 97.0 0.0032 7E-08 72.9 9.9 108 475-611 618-726 (733)
45 PRK00694 4-hydroxy-3-methylbut 96.4 0.011 2.4E-07 67.1 9.0 107 476-611 495-602 (606)
46 PRK02048 4-hydroxy-3-methylbut 95.8 0.017 3.7E-07 66.2 6.9 102 476-603 503-605 (611)
47 PF04551 GcpE: GcpE protein; 95.0 0.06 1.3E-06 58.3 7.1 113 171-360 243-357 (359)
48 cd01916 ACS_1 Acetyl-CoA synth 93.6 0.066 1.4E-06 63.5 4.4 45 145-190 278-322 (731)
49 TIGR00612 ispG_gcpE 1-hydroxy- 93.2 0.5 1.1E-05 50.9 9.7 107 174-357 237-344 (346)
50 PLN02925 4-hydroxy-3-methylbut 92.4 3 6.4E-05 49.2 15.2 117 170-366 607-725 (733)
51 COG0821 gcpE 1-hydroxy-2-methy 91.1 1.8 3.9E-05 46.6 10.7 106 183-364 247-353 (361)
52 PF01402 RHH_1: Ribbon-helix-h 88.9 0.72 1.6E-05 33.6 4.1 34 651-684 6-39 (39)
53 PRK00941 acetyl-CoA decarbonyl 85.7 0.88 1.9E-05 54.5 4.5 43 146-189 316-358 (781)
54 PF12651 RHH_3: Ribbon-helix-h 84.7 1.9 4E-05 32.8 4.4 36 650-685 8-43 (44)
55 cd01916 ACS_1 Acetyl-CoA synth 84.5 1 2.2E-05 53.8 4.4 44 442-485 279-323 (731)
56 PRK00694 4-hydroxy-3-methylbut 82.7 4.3 9.4E-05 46.8 8.2 91 201-366 509-601 (606)
57 PHA01623 hypothetical protein 79.3 3.3 7.1E-05 33.2 4.2 36 650-685 19-54 (56)
58 PRK02048 4-hydroxy-3-methylbut 78.3 7 0.00015 45.5 8.0 90 202-366 518-609 (611)
59 PF09274 ParG: ParG; InterPro 76.9 2 4.3E-05 36.6 2.4 42 644-685 34-75 (76)
60 PHA00617 ribbon-helix-helix do 69.1 7.7 0.00017 33.4 4.2 36 647-684 44-79 (80)
61 COG4226 HicB Predicted nucleas 68.6 15 0.00033 33.3 6.1 40 643-684 71-110 (111)
62 PRK00941 acetyl-CoA decarbonyl 66.7 7.2 0.00016 47.0 4.8 43 442-484 316-359 (781)
63 PF05534 HicB: HicB family; I 65.9 6.4 0.00014 30.9 2.9 33 644-678 19-51 (51)
64 PRK11675 LexA regulated protei 52.6 19 0.00041 31.8 3.7 36 648-683 54-89 (90)
65 PHA01748 hypothetical protein 51.9 28 0.0006 28.3 4.4 36 651-686 9-44 (60)
66 PF03869 Arc: Arc-like DNA bin 51.7 26 0.00055 27.4 4.0 37 646-684 8-44 (50)
67 COG4273 Uncharacterized conser 48.3 13 0.00028 34.7 2.1 59 539-605 69-127 (135)
68 PF12321 DUF3634: Protein of u 39.8 52 0.0011 30.1 4.6 53 131-184 34-88 (108)
69 PF07764 Omega_Repress: Omega 36.6 55 0.0012 26.7 3.8 40 644-685 27-66 (71)
70 COG4710 Predicted DNA-binding 33.3 77 0.0017 26.8 4.2 38 647-686 10-47 (80)
71 PHA01513 mnt Mnt 33.0 54 0.0012 28.5 3.5 38 646-685 9-46 (82)
72 PRK07539 NADH dehydrogenase su 30.4 2.8E+02 0.0062 26.7 8.5 92 433-554 36-129 (154)
73 PF05509 TraY: TraY domain; I 29.8 1.1E+02 0.0023 24.0 4.3 38 648-687 4-41 (49)
74 cd03063 TRX_Fd_FDH_beta TRX-li 29.0 2.8E+02 0.006 24.6 7.4 77 497-603 3-79 (92)
75 PF07704 PSK_trans_fac: Rv0623 28.6 1.1E+02 0.0025 26.3 4.8 39 649-687 3-42 (82)
76 PF10023 DUF2265: Predicted am 28.3 76 0.0016 34.8 4.5 92 539-630 85-204 (337)
77 COG4273 Uncharacterized conser 28.3 70 0.0015 30.0 3.6 64 284-367 70-133 (135)
78 PRK10550 tRNA-dihydrouridine s 27.3 1.8E+02 0.0038 31.6 7.1 68 127-197 135-202 (312)
79 PF08859 DGC: DGC domain; Int 27.0 27 0.00059 31.9 0.7 55 539-602 53-108 (110)
80 PF06183 DinI: DinI-like famil 25.8 99 0.0021 25.6 3.7 52 430-481 1-55 (65)
81 PF08774 VRR_NUC: VRR-NUC doma 25.8 1E+02 0.0023 27.0 4.3 43 410-453 48-92 (100)
82 PHA02938 hypothetical protein; 23.4 4.1E+02 0.0088 28.5 8.4 39 647-685 213-251 (361)
83 COG1885 Uncharacterized protei 23.1 1.1E+02 0.0023 27.8 3.6 35 527-563 34-73 (115)
84 PF07071 DUF1341: Protein of u 22.8 3.5E+02 0.0075 27.7 7.5 57 423-486 149-205 (218)
85 PF13089 PP_kinase_N: Polyphos 22.7 13 0.00028 33.9 -2.3 43 104-153 28-83 (109)
86 TIGR01958 nuoE_fam NADH-quinon 22.7 4.9E+02 0.011 24.8 8.6 91 433-553 30-122 (148)
87 COG0173 AspS Aspartyl-tRNA syn 22.0 4.1E+02 0.0088 31.2 8.9 107 342-460 239-361 (585)
88 PRK05988 formate dehydrogenase 21.7 5.5E+02 0.012 24.9 8.7 116 433-601 37-154 (156)
89 PF06183 DinI: DinI-like famil 21.4 1.4E+02 0.0029 24.8 3.7 53 134-187 1-55 (65)
90 PF08774 VRR_NUC: VRR-NUC doma 20.1 1.4E+02 0.003 26.2 3.9 27 127-153 63-89 (100)
No 1
>PLN00178 sulfite reductase
Probab=100.00 E-value=1.3e-139 Score=1198.27 Aligned_cols=593 Identities=80% Similarity=1.288 Sum_probs=563.9
Q ss_pred CCCccccchhhccCCCCCCcccccCCCCChhhhhhhhcCCCccchHHhhhhcCCCCCHhHHHHHhhceeeeeccCcccCC
Q 005564 44 PYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGA 123 (691)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~E~iK~~~~~l~~~~~~~l~~~~~~~~~~~~~~lk~~G~y~q~~rd~r~~ 123 (691)
+.+++.+++.||++|++++++. .+|+||+|+||++||+|+++++++|++..++++++|.+++||||+|+|+|||.|.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~--~~k~~~~E~~K~~s~~l~~~~~~~l~~~~~~~~~~d~~~~K~~G~y~q~~r~~r~~ 105 (623)
T PLN00178 28 RSRSGRLVIRAVATPVKKPTTE--PPKRSKVEIIKENSNFLRHPLNEELATEAPNINEDAVQLIKFHGSYQQDNREKRGG 105 (623)
T ss_pred cccCCCcceeeeecCCCCcccc--cCCCCHHHHHhhhcCCCcchHHHHHHhccCCCChhHHhHhheeeeeeecCccccCC
Confidence 3333457889999999998764 67999999999999999999999999888899999999999999999999999999
Q ss_pred ccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 005564 124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVL 203 (691)
Q Consensus 124 ~~~~fmlRir~pgG~lt~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G~t~~a~GD~~RNV~ 203 (691)
++|+||||+|+|+|.||++||++|++||++||+|++|||||||||||||.++|+++++++|.+.+++|.++|||++||||
T Consensus 106 ~~~~fMlRvriPgG~lt~~Q~~~la~iA~~yg~g~l~lTTRq~iQlhgI~~~dl~~i~~~L~~~gl~t~~a~gD~~RNV~ 185 (623)
T PLN00178 106 KAYQFMLRTKQPAGKVPNRLYLVMDDLADEFGIGTLRLTTRQTFQLHGVLKKDLKTVMSSIIKNMGSTLGACGDVNRNVL 185 (623)
T ss_pred cCcceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEecccceEEcCCCHHHHHHHHHHHHHcCCCcccccCCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999995556699999999999999
Q ss_pred cCCCCCChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCce
Q 005564 204 APPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKF 283 (691)
Q Consensus 204 acp~~~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKf 283 (691)
+||+|++..++.|++++|++|+++|+|+|++|+|+|||++++.+.++++++.+++++.++++|.+++||+||.++|||||
T Consensus 186 ~~p~p~~~~e~~d~~~~a~~l~~~l~p~t~~y~e~~ld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ep~yg~~~LPRKF 265 (623)
T PLN00178 186 APAAPFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARNDNSHGTNFEDSPEPIYGTQFLPRKF 265 (623)
T ss_pred cCCCcCCchhhhhHHHHHHHHHHhhcccccchhhhhcccccccccccchhhhhhhcccccccccCCccccccccCCCCCe
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCcccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHH
Q 005564 284 KVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRE 363 (691)
Q Consensus 284 Ki~vsg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~eev~~~~~ai~~~~rd 363 (691)
||+|+||++||+++++|||||+++.+++|+..||+|+||||||++|++..|||++|+.++||++||++++++||+++|+|
T Consensus 266 Kiavsg~~~n~~~~~~nDiG~~a~~~~~g~~~Gf~v~vGGg~g~~~~~~~t~pr~a~~l~~v~~e~v~~v~~av~~~~rd 345 (623)
T PLN00178 266 KIAVTVPGDNSVDILTNDIGVVVVSDEAGEPQGYNIYVGGGMGRTHRNETTFPRLADPLGYVPKEDILYAVKAIVATQRD 345 (623)
T ss_pred EEEEecCccccccccccceEEEEEEeCCCcEeeEEEEEECccccCCCccCCCCccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987656667999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcchhhhHHHHHHhhchhHHHHHHHHHhCCCCCCCCCCCccccccccceEeccCCcEEEEEEeCCCCCCHHHHHHH
Q 005564 364 NGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTL 443 (691)
Q Consensus 364 ~G~R~~R~~aRlk~li~~~G~e~f~e~l~~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~v~vp~Grit~~ql~~L 443 (691)
||+|+||+++||||+|++||+++|+++|++++|+++++..+.+.+...||+|||+|+||.|++++++|+|+|+++|++.|
T Consensus 346 ~G~R~~R~~aRlk~li~~~G~e~f~~~ve~~~g~~~~~~~~~~~~~~~d~~G~~~q~dG~~~v~l~vp~Grit~~~l~~L 425 (623)
T PLN00178 346 YGRRDDRKQSRMKYLVHSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKSYLGWHEQGDGKLFYGVHVDNGRIKGEAKKAL 425 (623)
T ss_pred hCcccchhhhHHHHHHHHHCHHHHHHHHHHHhcccccCCCCccccccccceeEEEccCCcEEEEEecCCeecCHHHHHHH
Confidence 99999999999999999999999999999999999988877778888999999999999999999999999999999999
Q ss_pred HHHHHHhCCeEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHH
Q 005564 444 REIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKR 523 (691)
Q Consensus 444 a~iAe~yg~~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~ 523 (691)
++||++||.+||||++|||+|+||+++++++|++.|+++||.+....++.++++|||+|+++|++|++||+++++.|.++
T Consensus 426 a~iAe~yg~~iRlT~~Qnlil~~I~~~~~~~i~~~L~~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~~~ 505 (623)
T PLN00178 426 REVIEKYNLPVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDILKR 505 (623)
T ss_pred HHHHHHhCCcEEEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHHHH
Confidence 99999999899999999999999999999999999999999876557899999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEeecCceEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHH
Q 005564 524 IRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFY 603 (691)
Q Consensus 524 l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~ 603 (691)
++..+.+.+++.+.+|+||||||||+|++|+++||||+|.+.++|+||+||+.+++++|+.+...|+.++++++|++++.
T Consensus 506 l~~~~~~~~l~~~~~i~I~vSGCpNgCarp~iaDIGlvG~~~~~Y~I~lGG~~~~~~la~~~~~~V~~eei~~~le~ll~ 585 (623)
T PLN00178 506 VRAMFNKVGLKYDESVVVRMTGCPNGCARPYMAELGFVGDGPNSYQIWLGGTPNQTRLAEPFMDKVKVDDLEKVLEPLFY 585 (623)
T ss_pred HHHHHhhcCCCCCCceEEEEeCCCccccccccCcEEEEcCCCCeEEEEECCCCCcccccchhhcCcCHHHHHHHHHHHHH
Confidence 99988888887678999999999999999999999999987789999999987788999999999999999999999999
Q ss_pred HHHHhcccCCCcHHHHHHhhCHHHHHHHHHhHcCCc
Q 005564 604 YWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPA 639 (691)
Q Consensus 604 ~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~~~~ 639 (691)
+|++++++ +|+|++|++|+|+++|++.+..+.+..
T Consensus 586 ~y~~~r~~-~E~f~df~~R~G~e~~~~~~~~~~~~~ 620 (623)
T PLN00178 586 MWKQQRQE-KESFGDFTNRVGFEALKEYIESYAGSV 620 (623)
T ss_pred HHHHhCcC-CCCHHHHHHHcCcHHHHHHHHHhcCCc
Confidence 99999998 999999999999999999999888653
No 2
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=1.5e-130 Score=1118.84 Aligned_cols=565 Identities=70% Similarity=1.171 Sum_probs=531.3
Q ss_pred CCCChhhhhhhhcCCCccchHHhhhhcCCCCCHhHHHHHhhceeeeeccCcccC---CccceEEEEEecCCCccCHHHHH
Q 005564 69 TKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERG---AKSYSFMLRTKNPCGKVSNQLYL 145 (691)
Q Consensus 69 ~k~~~~E~iK~~~~~l~~~~~~~l~~~~~~~~~~~~~~lk~~G~y~q~~rd~r~---~~~~~fmlRir~pgG~lt~~ql~ 145 (691)
.|+||+|+||.+|++||++|.++|.+..++++++|.++|||||+|+|+|||.|. +++|+||+|+|+|+|+||++||+
T Consensus 4 ~~~~~~e~~k~~s~~l~~~~~~~l~~~~~~~~~~d~~~lK~~G~y~q~~r~~r~~~~~~~~~fM~RiriPgG~lt~~q~~ 83 (577)
T TIGR02042 4 QKRSKVEILKERSNFLREPLNEQLLEEATHFNEDAVQILKFHGSYQQDNRDNRGKGQEKDYQFMLRTKNPGGYVPPQLYL 83 (577)
T ss_pred CCCChHHHHhhhcccccCcHHHHhhccccCCChhHHHHHhheeeeeecCccccccccCccceEEEEEecCCcccCHHHHH
Confidence 479999999999999999999999998889999999999999999999999875 67889999999999999999999
Q ss_pred HHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCChh-hhhhHHHHHHHH
Q 005564 146 TMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRK-DYLFAQKTAENI 224 (691)
Q Consensus 146 ~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G~t~~a~GD~~RNV~acp~~~~~~-~~~d~~~la~~i 224 (691)
.|++||++||+|++|||||||||||||.++++++++++|.+.+++|.++|||++||||+||+++|.. ++.+++++|++|
T Consensus 84 ~ia~ia~~yg~g~~~iTtRq~iql~gi~~~~~~~~~~~l~~~~l~t~~a~gd~~RNV~~~P~~~~~~~~~~~~~~~a~~i 163 (577)
T TIGR02042 84 TLDDLADEYGNGTLRATTRQTFQLHGILKKNLKTVISTIVKNLGSTLGACGDLNRNVMAPPAPFRKRPEYEFAREYADNI 163 (577)
T ss_pred HHHHHHHHhCCCcEEEEcccceEeCCCCHHHHHHHHHHHHHhCCCceeccCCCCCCeecCCCccccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999996655689999999999999999988876 899999999999
Q ss_pred HHHhCCCccccccccccccccccCC-ChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCcccccCCEE
Q 005564 225 AALLTPQSGFYYDMWVDGEQIMTAE-PPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIG 303 (691)
Q Consensus 225 ~~~l~p~~~ay~e~~~d~~~~~~~~-~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~c~~~~~~DIg 303 (691)
+++|+|+|+||+|||||++++++.+ .+++...++++.+|+.+..++||+|+..+|||||||+|+||++||+++++||||
T Consensus 164 ~~~~~p~t~a~~e~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPRKFKi~vsg~~~~~~~~~~nDlg 243 (577)
T TIGR02042 164 ADLLTPQSGAYYELWLDGEKVMSAEPDPEVVAARNDNSHGTNFADSPEPLYGTQYLPRKFKIAVTVPGDNSIDLFTQDIG 243 (577)
T ss_pred HHhhcccccchhheecccccccccccchhhhhhhhcccccccccCCccccccccCCCCCceEEEEcCCCCcccceecceE
Confidence 9999999999999999999999874 466777788777777776678999988999999999999999999999999999
Q ss_pred EEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHhhc
Q 005564 304 VVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWG 383 (691)
Q Consensus 304 ~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~eev~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~G 383 (691)
|+++.+++|+..||+|+||||||++|+++.|||++|+.++||++||++++++||+++|+|||+|+||+++||||+|++||
T Consensus 244 f~a~~~~~g~~~Gf~v~vGGglg~~~~~~~t~p~~a~~l~~v~~e~v~~~~~av~~~~rd~G~R~nR~~aRlk~li~~~G 323 (577)
T TIGR02042 244 LVVVSNERGELEGFNIYVGGGMGRTHNKEETFARLADPLGYVPKEDIYYAVKAIVATQRDYGDRDDRRHARMKYLISDWG 323 (577)
T ss_pred EEEEEeCCCcEeeEEEEEecccCCCCCCccccchhccccCcCCHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHC
Confidence 99998765666799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCCccccccccceEeccCCcEEEEEEeCCCCCCHH----HHHHHHHHHHHhCCeEEecCC
Q 005564 384 IEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNVRITPN 459 (691)
Q Consensus 384 ~e~f~e~l~~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~v~vp~Grit~~----ql~~La~iAe~yg~~irlT~~ 459 (691)
+++|++++++++|+.+++..+.+.+...||+||++|+||.|++++++|+|+|+++ +++.|++||++|+.++|||++
T Consensus 324 ~e~f~~~ve~~~~~~~~~~~~~~~~~~~d~~G~~~q~dG~~~v~l~vp~Grl~~~~~~~l~~~LaeIA~~yg~~irlT~~ 403 (577)
T TIGR02042 324 IEKFREVVEQYFGKKIAPVRELPEFEYKDYLGWHEQGDGKWFLGLHIDSGRVKDDGNWQLKKALREIVEKYNLPVRLTPN 403 (577)
T ss_pred HHHHHHHHHHHhccccCCcccCCcccccccceEEECCCceEEEEEEecCceecCCchHHHHHHHHHHHHHhCCCEEEcCC
Confidence 9999999999999988887777777788999999999999999999999999995 458999999999989999999
Q ss_pred CcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCce
Q 005564 460 QNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESV 539 (691)
Q Consensus 460 QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~ 539 (691)
|||+|+||+++++++|++.|++.||....+.++.+++++||||+++|+++++||++.++.+.+.++.++++++++ |+++
T Consensus 404 Qnl~l~~V~~~~~~~i~~~L~~~Gl~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~l~~~l~~l~~~~~l~-~~~i 482 (577)
T TIGR02042 404 QNIILYDIQPEWKRAITTVLAQRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRALLEKVGLP-DEHF 482 (577)
T ss_pred CCeEECCCCHHHHHHHHHHHHhcCCCCCCCCCccceeeEeCCCcccccCchHHHHHHHHHHHHHHHHHHHhcCCC-CCCc
Confidence 999999999999999999999999987666789999999999999999999999999998999998888877774 5889
Q ss_pred EEEEEcCCCCCCCCccccEEEEeecCceEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHHHHHHhcccCCCcHHHH
Q 005564 540 VIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDF 619 (691)
Q Consensus 540 kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~ 619 (691)
+||||||||+|++|+++||||+|.+.++|+||+||+.+.+++|+.+...|+.+++++++++++.+|++++++ +|+|++|
T Consensus 483 ~I~vSGCpn~Ca~p~iaDIG~vG~~~~~y~l~lGG~~~~~rla~~~~~~vp~~ei~~vl~~ll~~y~~~r~~-~E~f~~f 561 (577)
T TIGR02042 483 VVRMTGCPNGCARPYMAELGFVGSAPNSYQVWLGGSPNQTRLARPFIDKLKDGDLEKVLEPLFVHFKQSRQS-GESFGDF 561 (577)
T ss_pred EEEEECCCccccCCCcCcEEEECCCCCcEEEEECCCCCcccchhHHhcCcCHHHHHHHHHHHHHHHHHhccC-CCCHHHH
Confidence 999999999999999999999998778899999998877889999999999999999999999999999988 9999999
Q ss_pred HHhhCHHHHHHHHHhH
Q 005564 620 TNRMGFEKLQELVEKW 635 (691)
Q Consensus 620 i~R~G~e~~~~~l~~~ 635 (691)
++|+|+++|++.+++|
T Consensus 562 i~R~G~e~~~~~l~~~ 577 (577)
T TIGR02042 562 CDRVGFDALREFVESY 577 (577)
T ss_pred HHHcCcHHHHHHHhcC
Confidence 9999999999999865
No 3
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-128 Score=1014.37 Aligned_cols=600 Identities=46% Similarity=0.764 Sum_probs=546.8
Q ss_pred cccccccccccccccc--cc-cccccCCCCccc--cchhhccCCCCCCcccccCCCCChhhhhhhhcCCCccchHHhhhh
Q 005564 20 IRSFNGLKPSHSLSIR--TN-LRAFPVPYASRS--SVVRAVSTPVKPETETKTETKRSKVEIIKEQSNFIRYPLNEELLT 94 (691)
Q Consensus 20 ~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~k~~~~E~iK~~~~~l~~~~~~~l~~ 94 (691)
+.-+..++..+.+.+| +. .+..|..+.+.. -+.+++.++..|.++- ++|++++|.||++||+||+++.|+|.+
T Consensus 26 l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~~p~d~d--~~kr~~~e~ike~snflr~~iseelld 103 (638)
T KOG0560|consen 26 LVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGINPQDKD--EPKRETNEDIKENSNFLRGTISEELLD 103 (638)
T ss_pred HHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCCCccccc--cCCcccHHHHHhhcchhhcccchhhhh
Confidence 5566667777777776 22 222222222122 3488999999888644 579999999999999999999999988
Q ss_pred cC-CCCCHhHHHHHhhceeeeeccCcccCCccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCC
Q 005564 95 DA-PNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVL 173 (691)
Q Consensus 95 ~~-~~~~~~~~~~lk~~G~y~q~~rd~r~~~~~~fmlRir~pgG~lt~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~ 173 (691)
+. .+.++.+.|++||||+|+|+|||.|.++.|+||+|.|+|+|..|++||++|++|+++||+|+++|||||++|||||.
T Consensus 104 es~~~v~esdvqL~KfhGiy~qddRd~r~gr~y~FM~R~klP~Gvtt~qq~l~lddls~k~G~gtlklTTRqtfQihGVl 183 (638)
T KOG0560|consen 104 ESKGSVDESDVQLIKFHGIYHQDDRDIRYGRSYSFMMRAKLPNGVTTPQQWLALDDLSDKYGNGTLKLTTRQTFQIHGVL 183 (638)
T ss_pred cCcCCcchhHHHHHHHhhhhhhcchhhhcchhhhhhheecCCCCCCCHHHHHHHHHHHHhhCCceeeeeeeceeeeeeee
Confidence 75 46999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhh
Q 005564 174 KKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEV 253 (691)
Q Consensus 174 ~~~l~~i~~~L~~~~G~t~~a~GD~~RNV~acp~~~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~ 253 (691)
+.||+++++.|++.+++|+++|||++|||+++.+|.....+.+..+.++.|+++|.|+|++|||+|++|+.+
T Consensus 184 kknlk~~lrgi~kv~ltTL~a~gD~~RNv~~sa~P~~~kd~~qi~dt~k~is~~llP~T~~y~e~w~e~~q~-------- 255 (638)
T KOG0560|consen 184 KKNLKETLRGIAKVGLTTLGACGDVNRNVVGSANPINGKDHEQIVDTAKNISALLLPYTNLYHEFWTEGPQV-------- 255 (638)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhccccccccccCCCccccCHHHHHHHHHHHhhhhCCccchHHHHhhcCcHH--------
Confidence 999999999997677799999999999999998888888899999999999999999999999999987664
Q ss_pred hhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCcccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCccc
Q 005564 254 VKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLET 333 (691)
Q Consensus 254 ~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~ 333 (691)
+.+|+ .+|+++-++ |||||.+|||||||++|+++|+|.+|+++||||+|++.+. +...||||+||||||++|++++
T Consensus 256 ve~rk--v~Gn~~~d~-epiygptyLPRKfkv~Vavp~dn~vd~~tnDva~v~i~en-d~~~GfNv~VGGgmgtthr~ek 331 (638)
T KOG0560|consen 256 VEARK--VHGNADVDN-EPIYGPTYLPRKFKVCVAVPPDNDVDVLTNDVALVAINEN-DGVFGFNVLVGGGMGTTHRNEK 331 (638)
T ss_pred hhhhc--cCCCccccc-ccccCcccCccceeEEEecCCCccccccccceeEEEEecc-CCceeeEEEeccccCCcccchh
Confidence 34454 678888777 9999999999999999999999999999999999999954 5668999999999999999999
Q ss_pred ccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHhhchhHHHHHHHHHhCCCCCCCC--CCCccccc
Q 005564 334 TFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFR--QLPEWEFK 411 (691)
Q Consensus 334 t~p~~a~~l~~v~~eev~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~G~e~f~e~l~~~~g~~l~~~~--~~~~~~~~ 411 (691)
|+||+|.++|||+.|+|+++++||+.+|||+|+|+||+++||||+|+.||++.|++.+++|+|++|+|.+ +.+.|++.
T Consensus 332 t~prla~~~gyVptddIl~~vkaIli~qRd~G~R~nRk~aRmkylid~lGVe~Fr~~VEe~~g~KfE~~r~~~~~~we~~ 411 (638)
T KOG0560|consen 332 TYPRLAELDGYVPTDDILPLVKAILIVQRDHGDRGNRKHARMKYLIDELGVEGFRTKVEEYMGKKFEPGRSEPNKQWERR 411 (638)
T ss_pred hcccccccccccchhhhHHHhhhheeeehhccCccchhhhhhhhhHHhhhhHHHHHHHHHHhcccCCcCcCCcchhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 66789999
Q ss_pred cccceEeccCCcEEEEEEeCCCCCCHHHHHH-HHHHHHHhCCeEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCC
Q 005564 412 SHLGWHEQGDGGLFCGLHVDNGRIAGKMKKT-LREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYV 490 (691)
Q Consensus 412 d~~G~~~q~dG~~~v~v~vp~Grit~~ql~~-La~iAe~yg~~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~ 490 (691)
||+|||+|++|.+++++++++||+.+.+++. |+++|+.+..++|||++|||+|+||..++...|.+.|..+++.... .
T Consensus 412 dyfGwh~q~~gl~f~glhVe~GRve~l~~ktglRev~e~~~~e~rlT~nQniii~nv~te~~~~i~~~la~~~l~npe-f 490 (638)
T KOG0560|consen 412 DYFGWHKQEEGLSFVGLHVENGRVEALDMKTGLREVAEYGSGELRLTVNQNIIIPNVETEKTEAILQELALYKLDNPE-F 490 (638)
T ss_pred cccccccCCCCceEEEEEccccccccchhhhHHHHHHHhhcceeeecccccEEecccchhhhHHHHHHHHHhccCCcc-h
Confidence 9999999999999999999999999987777 6666666656899999999999999999999999999999998765 4
Q ss_pred CCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEeecCceEEE
Q 005564 491 DPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQI 570 (691)
Q Consensus 491 ~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I 570 (691)
+.++.+++||+|+|+|++|++||++.++.|.+++++.++++|++.| .+.||||||||+|++||++||||+|++++.|++
T Consensus 491 s~L~~ss~AC~g~p~CglAi~Eser~lpkii~~ve~~~e~vgl~~d-sIvmr~TGCPNgCsrp~vaeig~vGkapnty~~ 569 (638)
T KOG0560|consen 491 SGLRLSSVACVGLPTCGLAIAESERRLPKIITEVERMFEEVGLPRD-SIVMRMTGCPNGCSRPWVAEIGLVGKAPNTYNL 569 (638)
T ss_pred hhhhhhhhcccCCCcchhHHHHHhhchhHHHHHHHHHHHHhCCCCC-ceEEEeccCCCCCCcchhhheeecccCCcceee
Confidence 5588899999999999999999999999999999999999999765 599999999999999999999999999999999
Q ss_pred EEcCCCCCccchhhhccCCChhHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhCHHHHHHHHHhHc
Q 005564 571 WLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWE 636 (691)
Q Consensus 571 ~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~ 636 (691)
++||.+...++++++...|...++.+++++++..|.-++.. +|.|++|+-|+|+++..+...-+.
T Consensus 570 ~lgG~p~~~~l~k~~~~~vkd~ei~~i~kpl~k~~~Lere~-~E~fgd~~~rvg~ek~~ee~~~he 634 (638)
T KOG0560|consen 570 MLGGGPVGQRLNKLYGRIVKDSEIGEIYKPLFKRYALEREV-GEHFGDEFIRVGIEKEEEEGDTHE 634 (638)
T ss_pred ecCCcchHHHHHHHHhccccHHHHHHHHhhhhhhhhhhHHH-HHHHHHHHHhhcceeccccccccc
Confidence 99999988999999999999999999999999999999998 999999999999998877654443
No 4
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=100.00 E-value=6.2e-119 Score=1027.33 Aligned_cols=543 Identities=45% Similarity=0.778 Sum_probs=500.9
Q ss_pred CCCCChhhhhhhhcCCCccchHHhhhhc-CCCCCHhHHHHHhhceeeeeccCcccC-------CccceEEEEEecCCCcc
Q 005564 68 ETKRSKVEIIKEQSNFIRYPLNEELLTD-APNVNESATQLIKFHGSYQQYNRDERG-------AKSYSFMLRTKNPCGKV 139 (691)
Q Consensus 68 ~~k~~~~E~iK~~~~~l~~~~~~~l~~~-~~~~~~~~~~~lk~~G~y~q~~rd~r~-------~~~~~fmlRir~pgG~l 139 (691)
.+|+||+|+||.+|++|++++.++|++. .++++++++++|||||+|+|+|||.|. +++|.||||||+|+|.|
T Consensus 8 ~~~~~~~E~~K~~~~~l~~~i~~~~~~~~~~~~~~~~~~~lk~~G~y~q~~r~~r~~~~~~~~~~~~~fm~RvriP~G~l 87 (569)
T PRK13504 8 EGKLSDVERIKLESNYLRGTIAEELNDGLTGGFSEDDFQLLKFHGSYQQDDRDIRAERAEQKLEPAYQFMLRCRLPGGVI 87 (569)
T ss_pred CCCCChHHHhhccCcCccchHHHHHHhhccCCCCHHHHHHHhheeeeEecchhhhhhhcccccCcCcceEEEEecCCCcc
Confidence 4689999999999999999999989765 579999999999999999999998773 44678999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcC-CCCCCCCCCCcccccCCCCCChhhhhhHH
Q 005564 140 SNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQ 218 (691)
Q Consensus 140 t~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G-~t~~a~GD~~RNV~acp~~~~~~~~~d~~ 218 (691)
|++||+.|++||++||+|++|||||||||||||+++++++++++| .++| +|.++|||++|||++||+++|..++.|++
T Consensus 88 t~~Ql~~la~la~~yg~G~i~lTtRQniQL~gI~~~~l~~i~~~L-~~~gl~t~~a~gd~~RNV~~~p~~~~~~~~~d~~ 166 (569)
T PRK13504 88 TPQQWLALDKLADEYGNGTLRLTTRQTFQFHGILKKNLKPVIQTI-NSVLLDTLAACGDVNRNVMCTPNPYESRLHAEAY 166 (569)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecccceeecCCchHhHHHHHHHH-HHcCCCcccccCCCCCceecCCCcccccchHHHH
Confidence 999999999999999999999999999999999999999999999 7777 77899999999999999889988999999
Q ss_pred HHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCcccc
Q 005564 219 KTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDIL 298 (691)
Q Consensus 219 ~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~c~~~~ 298 (691)
+++.+|.++|.|++.+|+|+|+++++..... ....+|+|+..+|||||||+||||+++|++++
T Consensus 167 ~la~~l~~~l~~~~~~y~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~LPrKfKiavsgc~~~c~~~~ 229 (569)
T PRK13504 167 EWAKKISDHLLPRTRAYAEIWLDGEKVATFS-----------------GTEEEPIYGKTYLPRKFKIAVAVPPDNDVDVY 229 (569)
T ss_pred HHHHHHHHHhccccchhHHhhhcCccccccc-----------------ccccCcccccCCCCCceEEEEEcCCccccCce
Confidence 9999999999999999999999887654311 01135778878999999999999999999999
Q ss_pred cCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Q 005564 299 TNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYL 378 (691)
Q Consensus 299 ~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~eev~~~~~ai~~~~rd~G~R~~R~~aRlk~l 378 (691)
+|||||+++.++ |+..||+||||||+|++|++..|+|++|+.++||++|++++++++|+++|++||+|++|+++||+|+
T Consensus 230 ~~DiG~~~~~~~-g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~~v~~e~v~~~~~ai~~~~~~~G~r~~r~~aRlk~l 308 (569)
T PRK13504 230 ANDLGFVAIAEN-GKLVGFNVLVGGGMGMTHGDKETYPRLADELGYVPPEDVLDVAEAVVTTQRDYGNRTDRKNARLKYT 308 (569)
T ss_pred ecceEEEEEecC-CcEEEEEEEEEccccCCCCCCCCCCccccccCccCHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHH
Confidence 999999999764 6567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhHHHHHHHHHhCCCCCCCCCCCccccccccceEeccCCcEEEEEEeCCCCCCHH----HHHHHHHHHHHhCCeE
Q 005564 379 ISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGK----MKKTLREIIEKYNLNV 454 (691)
Q Consensus 379 i~~~G~e~f~e~l~~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~v~vp~Grit~~----ql~~La~iAe~yg~~i 454 (691)
|++||+++|++++++++|+++++..+.+.+...+|+||++|+||.|+|++++|+|+|+++ |++.|+++|++|+..|
T Consensus 309 v~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~G~~~v~v~vp~Grl~~~~~~~~l~~La~iA~~yg~~i 388 (569)
T PRK13504 309 LERVGLDWFKAEVERRAGKKLEPARPYEFTGRGDRLGWVEGIDGKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHKGDF 388 (569)
T ss_pred HHHHhHHHHHHHHHHHhcCccCCCCCCCccCccceeEEEecCCCcEEEEEEecCEEecCCCcHHHHHHHHHHHHHhCCEE
Confidence 999999999999999999988776555555677899999999999999999999999999 9999999999999889
Q ss_pred EecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCC
Q 005564 455 RITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLK 534 (691)
Q Consensus 455 rlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~ 534 (691)
|+|++|||+|+||+++++++|++.|+++|+......++.+++++||||+++|++|++||+++++.|.++|++.+...++.
T Consensus 389 rlT~~Qnl~l~~i~~~~~~~l~~~L~~~gl~~~~~~~~~~~~ivAC~G~~~C~~a~~~t~~~a~~l~~~l~~~~~~~~l~ 468 (569)
T PRK13504 389 RLTANQNLIIANVPPSDKAKIEALLREYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLAKHGLS 468 (569)
T ss_pred EEeCCCCEEEcCCCHHHHHHHHHHHHhCCCCCCCCCCCceeceeecCCcccccchhhhHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999987655588899999999999999999999999999999999888766552
Q ss_pred CCCceEEEEEcCCCCCCCCccccEEEEeecCceEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHHHHHHhcccCCC
Q 005564 535 YNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDE 614 (691)
Q Consensus 535 ~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~~~E 614 (691)
|.+++||||||||+|++|+++||||+|...++|+||+||+.+.+++++.+...|+.+++++++++++++|++++.+ +|
T Consensus 469 -~~~i~I~vSGCpn~Ca~~~iaDIG~vG~~~~~y~i~lGG~~~~~~~~~~~~~~v~~~~v~~~l~~ll~~y~~~~~~-~E 546 (569)
T PRK13504 469 -DEHIVIRMTGCPNGCARPYLAEIGLVGKAPGRYNLYLGGSFNGTRLPKMYRENITEEEILATLDPLLGRWAKEREP-GE 546 (569)
T ss_pred -CCceEEEEeCCcccccccccCcEEEEecCCCeEEEEECCCCCCCccchHhhcCCCHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 6889999999999999999999999998778899999999877899999999999999999999999999999998 99
Q ss_pred cHHHHHHhhCHHHHHHHHH
Q 005564 615 SFGDFTNRMGFEKLQELVE 633 (691)
Q Consensus 615 rf~~~i~R~G~e~~~~~l~ 633 (691)
+|++|++|+|+ +++.+.
T Consensus 547 ~f~~~~~R~g~--~~~~~~ 563 (569)
T PRK13504 547 GFGDFVIRAGI--IREVLD 563 (569)
T ss_pred CHHHHHHHcch--HHhhhc
Confidence 99999999999 666553
No 5
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=5e-111 Score=956.29 Aligned_cols=528 Identities=41% Similarity=0.727 Sum_probs=482.7
Q ss_pred hhhhhhcCCCccchHHhhhhc-CCCCCHhHHHHHhhceeeeeccCcccC-------CccceEEEEEecCCCccCHHHHHH
Q 005564 75 EIIKEQSNFIRYPLNEELLTD-APNVNESATQLIKFHGSYQQYNRDERG-------AKSYSFMLRTKNPCGKVSNQLYLT 146 (691)
Q Consensus 75 E~iK~~~~~l~~~~~~~l~~~-~~~~~~~~~~~lk~~G~y~q~~rd~r~-------~~~~~fmlRir~pgG~lt~~ql~~ 146 (691)
|+||.+|+||++++.++|++. ..+++++++++|||||+|+|+|||.|. ++.|.||||||+|+|+||++||++
T Consensus 1 e~~k~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lk~~G~y~q~~~~~~~~~~~~~~~~~~~fmvRvripgG~lt~~Ql~~ 80 (541)
T TIGR02041 1 ERIKEESNYLRGTLLESLADPLTGGFSGDDFQLIKFHGMYQQDDRDLRAERAEQKLEPAYQFMLRCRLPGGVITPKQWLA 80 (541)
T ss_pred CcchhccccchhHHHHHHhhhhhcCCCHHHHHHHHHheeeeeccccchhhhcccccCCcceeEEEEecCCcEECHHHHHH
Confidence 899999999999999999876 468999999999999999999998664 356789999999999999999999
Q ss_pred HHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcC-CCCCCCCCCCcccccCCCCCChhhhhhHHHHHHHHH
Q 005564 147 MDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIA 225 (691)
Q Consensus 147 la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G-~t~~a~GD~~RNV~acp~~~~~~~~~d~~~la~~i~ 225 (691)
|++||++||+|++|||||||||||||+++++++++++| .++| +|.++|||++|||+|||.|.|.....++.++|.+|+
T Consensus 81 la~ia~~yg~g~i~lTtRQniQl~gI~~~~l~~v~~~L-~~~GL~t~~a~gd~~RnV~c~~~p~~~~~~~e~~~~a~~l~ 159 (541)
T TIGR02041 81 IDKFAREYGNGSIRLTTRQTFQFHGILKRNLKAVHQAI-HSAGLDSIATCGDVNRNVLCTSNPYESELHQEAYEWAKKIS 159 (541)
T ss_pred HHHHHHHhCCCeEEEecccceEEcCCChhHHHHHHHHH-HHcCCCccccCCCCCCceeCCCCcccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 8888 779999999999997677899888899999999999
Q ss_pred HHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCcccccCCEEEE
Q 005564 226 ALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVV 305 (691)
Q Consensus 226 ~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~c~~~~~~DIg~v 305 (691)
++|.|.+.+|+++|+++..+... ...+|+|+..+|||||||+||||++||+++.+|||||+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~LPrKfKi~isg~~~~~~~~~~~DiG~~ 220 (541)
T TIGR02041 160 EHLLPRTRAYHEIWLDEKKVAGT-------------------EEVEPIYGPTYLPRKFKTGVVIPPINDVDVYANDLGFV 220 (541)
T ss_pred HHhccCchhHHHHhhhcccccCC-------------------cccCccccccCCCCCcEEEEECCCCccccccccceEEE
Confidence 99999999999999876554221 01256787788999999999999999999999999999
Q ss_pred EEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHhhchh
Q 005564 306 VVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIE 385 (691)
Q Consensus 306 ~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~eev~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~G~e 385 (691)
++.++ |+..||+|+||||+|+++++..|+|++|..++||++|++++++++|+++|++||+|.+|+++||+|+|++||++
T Consensus 221 a~~~~-g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~~v~~e~v~~~~~ai~~~~~~~g~r~~r~~aRlk~li~~~G~e 299 (541)
T TIGR02041 221 AIADN-GKLIGFNVLIGGGLGMTHGNKATYPRLANEIGFIPPEHTLAVAEAIVTTQRDFGNRTDRKNARTKYTIDRMGLD 299 (541)
T ss_pred EEEeC-CcEEEEEEEEeccccCCCCCcCCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHhCHH
Confidence 98875 55679999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCccccccccceEeccCCcEEEEEEeCCCCCCH----HHHHHHHHHHHHhCCeEEecCCCc
Q 005564 386 KFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQN 461 (691)
Q Consensus 386 ~f~e~l~~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~v~vp~Grit~----~ql~~La~iAe~yg~~irlT~~Qn 461 (691)
+|+++|+++++.++.+..+.......+|+||++|++|.|++++++|+|+|++ .+++.|+++|+.|+..||+|++||
T Consensus 300 ~f~~~v~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~G~~~v~v~~p~G~l~~~~~~~~l~~la~iA~~~~~~irlT~~Qn 379 (541)
T TIGR02041 300 TFKAEVERRAGITLEPARPYVFTHRGDRYGWVKGIDGNWHLTLFIESGRIADYPDKPLMTGLREIAKIHKGDFRITPNQN 379 (541)
T ss_pred HHHHHHHHHhCCCCCCCCCccccccccccCeecCCCCcEEEEEEecCceeecCccHHHHHHHHHHHHhcCCeEEEeCCCC
Confidence 9999999998887766555444456789999999999999999999999995 499999999987666899999999
Q ss_pred EEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEE
Q 005564 462 IILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVI 541 (691)
Q Consensus 462 I~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI 541 (691)
|+|+||++++++++.+.|++.|+.++ ..++.+++++||||+++|++|++||+.++..|.++|++.+.++++. |.+++|
T Consensus 380 l~l~~v~~~~~~~l~~~l~~~gl~~~-~~~~~~~~vvAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~~~~~~-~~~~~I 457 (541)
T TIGR02041 380 LIIANVPEGGKAKIEALARQYGLIDG-KVTALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNIMEKHGLA-DEEIVL 457 (541)
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCCCC-CCCceeeccEECCCccchhhhHHHHHHHHHHHHHHHHHHHHhcCCC-CCceEE
Confidence 99999999999999999999999764 3567889999999999999999999999999999998888766653 678999
Q ss_pred EEEcCCCCCCCCccccEEEEeecCceEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Q 005564 542 RVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTN 621 (691)
Q Consensus 542 ~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~ 621 (691)
|||||||+|++|+++||||+|...++|+||+||+.+++++|+.+...|+.++++++|++++++|++++++ +|||++|++
T Consensus 458 ~iSGCpn~Ca~~~~adIG~~G~~~~~y~l~lGG~~~~~~~g~~~~~~v~~~~v~~~v~~ll~~y~~~~~~-~E~f~~~~~ 536 (541)
T TIGR02041 458 RMTGCPNGCGRPYLAEIGLVGKAPGRYNLMLGGNRRGQRLPRLYRENITEPEILAELDELLGRYAAERKP-GEGFGDFLI 536 (541)
T ss_pred EEecCCccccccccCcEEEEEeccceEEEEECCCCCCCchhHHHHcCCCHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHH
Confidence 9999999999999999999998777899999999778999999999999999999999999999999998 999999999
Q ss_pred hhCHH
Q 005564 622 RMGFE 626 (691)
Q Consensus 622 R~G~e 626 (691)
|+|++
T Consensus 537 R~g~~ 541 (541)
T TIGR02041 537 RTGII 541 (541)
T ss_pred hcCCC
Confidence 99863
No 6
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=4.1e-107 Score=930.75 Aligned_cols=502 Identities=26% Similarity=0.402 Sum_probs=445.3
Q ss_pred CCCCChhhhhhhhcCCCcc-chHHhhhhcCCCCC-HhHHHHHhhceeeeeccCcccCCccceEEEEEecCCCccCHHHHH
Q 005564 68 ETKRSKVEIIKEQSNFIRY-PLNEELLTDAPNVN-ESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYL 145 (691)
Q Consensus 68 ~~k~~~~E~iK~~~~~l~~-~~~~~l~~~~~~~~-~~~~~~lk~~G~y~q~~rd~r~~~~~~fmlRir~pgG~lt~~ql~ 145 (691)
.+|+||+|+||++|++|+. +-+.+++.. +.++ +|+.++|||||+|+|.. ..+.||||||+|+|.||++||+
T Consensus 62 ~~kl~~~E~~K~~~~~l~~~~~l~~~~~~-~~~~~~~~~~~~k~~G~y~~~~------~~~~fM~RvripgG~lt~~Q~~ 134 (593)
T PRK09567 62 GKKLCDQEKWKREENPFDAWDRLKAQAAA-GAFPKPADNFRWKYHGLFYVAP------AQDSYMCRLRIPNGILTHWQFA 134 (593)
T ss_pred cCCCCHHHHHhhcCCcchhhhHHHHHHhc-CCCCChhhhhhhccceEEEEcc------cCCeEEEEEEeCCeecCHHHHH
Confidence 4689999999999999983 223333333 3454 78888999999999863 2358999999999999999999
Q ss_pred HHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcC-CCCCCCCCCCcccccCCCC-CChhhhhhHHHHHHH
Q 005564 146 TMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAEN 223 (691)
Q Consensus 146 ~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G-~t~~a~GD~~RNV~acp~~-~~~~~~~d~~~la~~ 223 (691)
+|++||++||+|++|||||||||||||.++|+++++++| .++| +|.++|||++||||+||.+ .|+.++.|+++++++
T Consensus 135 ~la~ia~~yg~g~~~lTTRq~iQlhgI~~~d~~~i~~~l-~~~GL~t~~a~gD~~RNV~~~P~ag~~~~e~~D~~~~a~~ 213 (593)
T PRK09567 135 GLADLADRHGGGYSHVTTRANLQLREIPPEHAVPVLEGL-VDLGLTARGSGADNIRNVTGSPTAGIDPQELLDTRPYARE 213 (593)
T ss_pred HHHHHHHHHCCCeEEEeccccEEeccCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCcCCCCCCCCChhhccchHHHHHH
Confidence 999999999999999999999999999999999999999 8888 8889999999999999985 888999999999999
Q ss_pred HHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCcccccCCEE
Q 005564 224 IAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIG 303 (691)
Q Consensus 224 i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~c~~~~~~DIg 303 (691)
|.++|.. + +++| +|||||||+||||+++|....+||||
T Consensus 214 l~~~~~~--------------------------------------~-~~~~---~LPrKfkiaisg~~~~~~~~~~nDig 251 (593)
T PRK09567 214 WHHHILN--------------------------------------D-RSLY---GLPRKFNVAFDGGGRIATLEDTNDIG 251 (593)
T ss_pred HHHHHhC--------------------------------------C-chhc---CCCCCeEEEEECCCccccccccccee
Confidence 9877531 1 2344 49999999999999999999999999
Q ss_pred EEEEecCCCcc----ceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Q 005564 304 VVVVSDENGEP----QGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYL 378 (691)
Q Consensus 304 ~v~~~~~~g~~----~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~~~rd~G~R~~R~~aRlk~l 378 (691)
|+++.+++|.. .||+|+|||++|.. .+|..++ ||++||++++++||+++|+|||+|+||+++||||+
T Consensus 252 f~a~~~~~g~~~~~g~gf~v~vGG~~g~~--------~~a~~~~~~v~~e~v~~~~~Ai~~~f~d~G~R~~R~~aRlk~l 323 (593)
T PRK09567 252 FQAVRVLEGAGVAPGVYFRLVLGGITGHK--------DFARDTGVLLRPEEATAVADAIVRVFIENGDRTNRKKARLKYV 323 (593)
T ss_pred eEEEEecCCccccccceEEEEEecccCCC--------cchhhhhccCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHH
Confidence 99987644432 58999999999852 3577787 69999999999999999999999999999999999
Q ss_pred HHhhchhHHHHHHHHHhCCCCCCC-----CCCCccccccccceEecc-CCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC
Q 005564 379 ISSWGIEKFRSVVEQYYGKKFEPF-----RQLPEWEFKSHLGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL 452 (691)
Q Consensus 379 i~~~G~e~f~e~l~~~~g~~l~~~-----~~~~~~~~~d~~G~~~q~-dG~~~v~v~vp~Grit~~ql~~La~iAe~yg~ 452 (691)
|++||+++|++++++++|+++.+. .+.+.+...+|+|||+|+ +|.|+|++++|+|+|+++|++.||++|++||.
T Consensus 324 i~~~G~e~f~~~ve~~~~~~l~~~~~~~~~~~~~~~~~~~~Gv~~Qkq~G~~~v~v~vp~Grlt~~ql~~LA~iA~~yg~ 403 (593)
T PRK09567 324 LDAWGFDKFLEAVEEKLGRPLTRVPAEAVAPRPAADRFAHVGVHPQKQPGLNWIGVVLPVGRLTTDQMRGLAKIAARYGD 403 (593)
T ss_pred HHHHCHHHHHHHHHHHhcccccccchhhcCCCcchhccccceeeccCCCCceEEEEECCCCccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999877532 222345567899999999 69999999999999999999999999999987
Q ss_pred -eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhc
Q 005564 453 -NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKV 531 (691)
Q Consensus 453 -~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~ 531 (691)
.||||+||||+|+||+++++++|++.|.+.||.+. .++.+++++||+|+++|+++++||++++..|.++|...+
T Consensus 404 g~irlT~~Qni~l~~V~~~~~~~l~~~L~~~Gl~~~--~~~~r~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~--- 478 (593)
T PRK09567 404 GEIRLTVWQNLLISGVPDADVAAVEAAIEALGLTTE--ASSIRAGLVACTGNAGCKFAAADTKGHALAIADYCEPRV--- 478 (593)
T ss_pred CEEEEeCCCCeEEcCCCHHHHHHHHHHHHHcCCCCC--CcceeeccEecCCCCCCCccHhhHHHHHHHHHHHHHHhc---
Confidence 79999999999999999999999999999999874 345556799999999999999999999999999887643
Q ss_pred CCCCCCceEEEEEcCCCCCCCCccccEEEEeec--------CceEEEEEcCCCC-CccchhhhccCCChhHHHHHHHHHH
Q 005564 532 GLKYNESVVIRVTGCPNGCARPYMAELGLVGDG--------PNSYQIWLGGTHN-QTTLARTFMNKVKVQELEKVFEPLF 602 (691)
Q Consensus 532 gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g--------~~gy~I~lGG~~~-~~rlg~~l~~~v~~eel~~~l~~ll 602 (691)
++ |.+|+||||||||+|++|+++||||+|.. .++|+||+||+.+ .+++|+.+...|+.+++++++++++
T Consensus 479 ~l--~~~ikI~vSGCpn~Ca~~~iaDIGfvG~~~~~~~g~~~~gy~v~lGG~~g~~~~lg~~~~~~vp~eev~~~l~~ll 556 (593)
T PRK09567 479 AL--DQPVNIHLTGCHHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIVVGGGFGEDAAIGREVFRDVKAEDAPRLVERLL 556 (593)
T ss_pred CC--CCCcEEEEECCCccccccccCCEEEEeeEeccCCCCccceEEEEECCCCCCCCCcchHhhcCCCHHHHHHHHHHHH
Confidence 34 68899999999999999999999999952 3689999999987 6899999999999999999999999
Q ss_pred HHHHHhcc-cCCCcHHHHHHhhCHHHHHHHHHhH
Q 005564 603 YYWKQKRQ-TKDESFGDFTNRMGFEKLQELVEKW 635 (691)
Q Consensus 603 ~~y~~~~~-~~~Erf~~~i~R~G~e~~~~~l~~~ 635 (691)
..|.++++ + +|+|++|++|+|+++|++.+...
T Consensus 557 ~~y~~~r~~~-~E~f~~f~~R~g~e~l~~~l~~~ 589 (593)
T PRK09567 557 RAYLAHRQGP-DETFQAFTRRHDPEALRSLAEEQ 589 (593)
T ss_pred HHHHHhcCCC-CCcHHHHHHHcCcHHHHHHHhcc
Confidence 99999998 6 99999999999999999999754
No 7
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-102 Score=866.95 Aligned_cols=491 Identities=39% Similarity=0.677 Sum_probs=446.3
Q ss_pred CCChhhhhhhhcCCCccchHHhhhhc-CCCCCHhHHHH-HhhceeeeeccCcccCCccceEEEEEecCCCccCHHHHHHH
Q 005564 70 KRSKVEIIKEQSNFIRYPLNEELLTD-APNVNESATQL-IKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTM 147 (691)
Q Consensus 70 k~~~~E~iK~~~~~l~~~~~~~l~~~-~~~~~~~~~~~-lk~~G~y~q~~rd~r~~~~~~fmlRir~pgG~lt~~ql~~l 147 (691)
+.+ +|++|+++++|+.++.+.+.+. ...+++++++. +||||+|+| +++|.||||+|+|+|.+||+||++|
T Consensus 6 ~~~-~e~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y~q-------~~~~~~MlRvriPgG~ls~~q~r~l 77 (510)
T COG0155 6 PLD-NERLKAESNFLRGTIEDQLSDRLSGGLCEDDFRPLLKFDGLYLQ-------EPDHAFMLRVRIPGGILSPKQLRAL 77 (510)
T ss_pred CcC-HHHHhhhhhhhHHHHHHHhhhccccCCCHHHHHHHHhhcceeec-------ccccceeEEEecCCCccCHHHHHHH
Confidence 344 9999999999998887777754 56899999997 999999999 3568999999999999999999999
Q ss_pred HHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcC-CCCCCCCCCCcccccCCCC-CChhhhhhHHHHHHHHH
Q 005564 148 DDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAENIA 225 (691)
Q Consensus 148 a~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G-~t~~a~GD~~RNV~acp~~-~~~~~~~d~~~la~~i~ 225 (691)
+++|++||+|+++||||||||||||.++|++++++.| .++| .|+++|||++|||+++|.. .+..++.|.+++
T Consensus 78 ~~iA~~yg~g~~~iTtRQniQ~hgI~~~d~~~i~~~l-~~vgl~ti~~~gd~~Rnv~~~P~ag~~~~ei~D~r~~----- 151 (510)
T COG0155 78 ADIARRYGRGTIELTTRQNIQFHGIRKKDVPEILAEL-ASVGLHTIATAGDVARNVTGDPLAGLDADEIADPRPL----- 151 (510)
T ss_pred HHHHHHhCCCeEEEeecccceecccccccHHHHHHHH-HHcCCcchhhccccccceecCcccccchhhcccchhH-----
Confidence 9999999999999999999999999999999999999 6766 9999999999999998753 445555555533
Q ss_pred HHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCcccccCCEEEE
Q 005564 226 ALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVV 305 (691)
Q Consensus 226 ~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~c~~~~~~DIg~v 305 (691)
.+|+++|+++++ +..+|||||||+|++|++||+++++|||||+
T Consensus 152 -------~~~~~~~l~~~~------------------------------~~~~LPRKFkiav~g~~~~~v~~~~~Di~~~ 194 (510)
T COG0155 152 -------AEILRIWLDGEK------------------------------GFAYLPRKFKIAVDGGPDNDVDVLINDIGFV 194 (510)
T ss_pred -------HHHHHHHhcCcc------------------------------chhcCCcceEEEEecCcccchhhhccceeEE
Confidence 447788987543 2368999999999999999999999999999
Q ss_pred EEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHhhchh
Q 005564 306 VVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIE 385 (691)
Q Consensus 306 ~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~eev~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~G~e 385 (691)
++.++ +++.||+|+||||+|++| ..++|+++. +|++++++++++||+.+|+|||+|.||+++|+||+|++||+|
T Consensus 195 a~~~~-~~~~Gf~v~VGGglg~~~--~~~~~~~~~---~v~~~~~~~~~~aiv~~~~d~G~R~nr~~aR~k~lv~~~G~E 268 (510)
T COG0155 195 AIKEN-DGLLGFNVLVGGGLGRTH--PKTAPRLAE---FVPPEDVLEVVEAIVRVYRDYGRRANRKKARLKYLVEALGVE 268 (510)
T ss_pred Eeccc-CCccceEEEEccccccCC--cchhhHHhh---ccCHHHHHHHHHHHHHHHHhcchhhhhhhhhHHHHHHHhChH
Confidence 99975 455799999999999987 334444333 678899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCccccccccceEeccCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEE
Q 005564 386 KFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIIL 464 (691)
Q Consensus 386 ~f~e~l~~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L 464 (691)
+|++++++++|+++.|.++...+...+|+||++|+||.|++++.+|+|+|+++.+..|++.+++++. +||+|++|||+|
T Consensus 269 ~f~~~ve~~~g~~~~~~~~~~~~~~~d~~Gw~~~~~g~~~~g~~v~~Grl~~~~~~~l~~~~~~~~~~eiRlT~~QnLii 348 (510)
T COG0155 269 KFRREVEPRLGKPFEPARPREFTGNGDHIGWVPQKDGLWHLGLAVPNGRLKAEGLIPLATEAEEIGFGEIRLTPNQNLII 348 (510)
T ss_pred HHHHHHHHhhCcccCccccccccCCCCceeEEEcCCCcEEEEEecceeeecCccchHHHHHHHHHhhccEEeccCcceEe
Confidence 9999999999999988877777778899999999999999999999999999999999999999997 899999999999
Q ss_pred ccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEE
Q 005564 465 CDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVT 544 (691)
Q Consensus 465 ~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vS 544 (691)
+||+.++++.|++.|.+.||.+ +.++++++++||+|.++|++|++||++.++.|.+++++.++.+++ +++||||
T Consensus 349 ~~v~~~~~~~i~~~l~~~Gl~t--~~~~l~~~~~AC~G~p~C~lA~aet~~~a~~i~~~l~~~~~~~~~----~i~i~is 422 (510)
T COG0155 349 PNVPEAELEAILRILAALGLVT--APSSLRRNSIACVGLPTCALALAETERDAPRIIARLEDLLDKHGL----PITLHIS 422 (510)
T ss_pred cCCCHHHHHHHHHHHHHcCCCC--CCcchhhhcccCCCCCchhhhHhhHHHHHHHHHHHHHhhhcccCC----ceeEEec
Confidence 9999999999999999999998 457788999999999999999999999999999999998887665 5999999
Q ss_pred cCCCCCCCCccccEEEEeecCceEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhC
Q 005564 545 GCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMG 624 (691)
Q Consensus 545 GCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G 624 (691)
||||+|++|++++|||+|+..+.|+||+||+...+++++.+.+.++.+++.+++++++..|.++|.. +|+|++|+.|.|
T Consensus 423 GCpn~Ca~~~~a~Igl~G~~~~~y~v~lGG~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~R~~-gE~f~d~~~R~g 501 (510)
T COG0155 423 GCPNGCGRPHLAEIGLVGKAKGGYQVYLGGGADGTRGGKLYGENVPAEEILDAIDRLIGRYAKERHE-GESFGDFVIRAG 501 (510)
T ss_pred cCcchhcCcccCceeEeeccCcceEEEecCCCCCCccceeecCCCCHHHHHHHHHHHHHHHHhccCC-CccHHHHHHHhC
Confidence 9999999999999999999888999999996668899999999999999999999999999999998 999999999998
No 8
>PLN02431 ferredoxin--nitrite reductase
Probab=100.00 E-value=3.9e-98 Score=851.27 Aligned_cols=481 Identities=25% Similarity=0.401 Sum_probs=417.7
Q ss_pred CCCChhhhhhhhcCCCcc---chHHhhhh-cCCCCCH-----hHHH-HHhhceeeeeccCcccCCccceEEEEEecCCCc
Q 005564 69 TKRSKVEIIKEQSNFIRY---PLNEELLT-DAPNVNE-----SATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGK 138 (691)
Q Consensus 69 ~k~~~~E~iK~~~~~l~~---~~~~~l~~-~~~~~~~-----~~~~-~lk~~G~y~q~~rd~r~~~~~~fmlRir~pgG~ 138 (691)
.|+||+|++|.+++||.- .-+++++. ..++|++ +|+. +|||+|+|+|+.++ ++.||||||+|+|.
T Consensus 73 ~~ln~~E~~K~~~~~~~~~~~~~i~~~a~~g~~~i~~~~~~~~d~~~r~kw~Gl~~~~~~~-----~~~fMlRvRiPgG~ 147 (587)
T PLN02431 73 KGINPQEKVKLEKEPMKLFMENGIEELAKTPFEEIDKSKLSKDDIDVRLKWLGLFHRRKHQ-----YGRFMMRLKLPNGV 147 (587)
T ss_pred ccCCHHHHhhcccCcccccchhhHHHHHhcChhhcCcccCChHHHHhhhhheeeeeecCCC-----CCceEEEEecCCcc
Confidence 468999999999999973 23455654 3577877 8886 89999999986542 45899999999999
Q ss_pred cCHHHHHHHHHHHHHhC-CCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcC-CCCCCCCCCCcccccCCCC-CChhhhh
Q 005564 139 VSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDYL 215 (691)
Q Consensus 139 lt~~ql~~la~lA~~yG-~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G-~t~~a~GD~~RNV~acp~~-~~~~~~~ 215 (691)
||++||+.|++||++|| +|++|||||||||||||..+|+++++++| +++| +|.++|||++|||++||.. .|+.++.
T Consensus 148 lt~~Qlr~la~ia~~yg~~G~i~iTtRqniQl~gI~~ed~p~i~~~L-~~vGL~t~~a~gd~vRNI~~~P~aG~~~~e~~ 226 (587)
T PLN02431 148 TTSAQTRYLASVIEKYGEDGCADVTTRQNWQIRGVVLPDVPAILKGL-EEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIV 226 (587)
T ss_pred cCHHHHHHHHHHHHHhCCCCeEEEecCcceEeCCCCHHHHHHHHHHH-HHcCCCchhccCCCCCCcccCCCCCCCccccc
Confidence 99999999999999999 58999999999999999999999999999 8888 7799999999999999975 8899999
Q ss_pred hHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCc
Q 005564 216 FAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSV 295 (691)
Q Consensus 216 d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~c~ 295 (691)
|+++++++|.++|.. +|.+|++ | .+|||||||+||||+++|+
T Consensus 227 Dt~pla~~l~~~~~~----------------------------------~~~~~~~--~--~~LPrKfkiavsG~~~~~~ 268 (587)
T PLN02431 227 DTRPYTNLLSDYITN----------------------------------NGRGNPE--I--TNLPRKWNVCVVGSHDLFE 268 (587)
T ss_pred cHHHHHHHHHHHhhh----------------------------------cccCCcc--c--ccCCCCeEEEEecCccccc
Confidence 999999999988742 0112333 2 6899999999999999999
Q ss_pred ccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHHHHHHhCCCCcchhhh
Q 005564 296 DILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSR 374 (691)
Q Consensus 296 ~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~~~rd~G~R~~R~~aR 374 (691)
++.+|||||+++.++ |. .||+|+|||++|++. +..+..++ ||++||+++++++|+++|+|||+|+||+++|
T Consensus 269 ~~~~nDigf~~~~~~-g~-~Gf~v~vGG~~g~~~------~~~~~~l~~~v~~e~v~~v~~av~~~f~d~G~R~~R~kaR 340 (587)
T PLN02431 269 HPHINDLAYMPATKD-GR-FGFNLLVGGFFSPKR------CAEAIPLDAWVPADDVVPLCKAILEAFRDLGTRGNRQKTR 340 (587)
T ss_pred cccccceEEEEEEEC-Cc-eEEEEEEeCCcCCCC------ccccchhhcccCHHHHHHHHHHHHHHHHHhCCccchhhhH
Confidence 999999999998864 44 599999999998641 33455665 8999999999999999999999999999999
Q ss_pred HHHHHHhhchhHHHHHHHHHhC-CCCCCCCC--C--CccccccccceEecc-CCcEEEEEEeCCCCCCHHHHHHHHHHHH
Q 005564 375 MKYLISSWGIEKFRSVVEQYYG-KKFEPFRQ--L--PEWEFKSHLGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIE 448 (691)
Q Consensus 375 lk~li~~~G~e~f~e~l~~~~g-~~l~~~~~--~--~~~~~~d~~G~~~q~-dG~~~v~v~vp~Grit~~ql~~La~iAe 448 (691)
|+|+|++||+++|+++++++++ .+++.... . +.|...+|+|||+|+ +|.|+|++++|+|+|+++||+.||++|+
T Consensus 341 lk~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~Qk~~G~~~v~v~vp~Grlt~~qL~~LA~lA~ 420 (587)
T PLN02431 341 MMWLIDELGVEGFRSEVEKRMPNGELERAASEDLVDKKWERRDYLGVHPQKQEGLSYVGLHVPVGRLQAADMDELARLAD 420 (587)
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcccccccccchhcccceeEEEeeccCCeEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998874 45543322 1 235567899999998 5899999999999999999999999999
Q ss_pred HhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHH
Q 005564 449 KYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAV 527 (691)
Q Consensus 449 ~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~ 527 (691)
+||. +||||++|||+|++|+.+++++++++|...|+... .++.+++++||+|+++|+++++||++++.+|.+++.+.
T Consensus 421 ~yG~g~irlT~~Qni~i~~V~~~~v~~l~~~l~~~g~~~~--~~~~~r~vvACtG~~~C~~ai~eTk~~A~~L~~~l~~~ 498 (587)
T PLN02431 421 EYGSGELRLTVEQNIIIPNVPNSKVEALLAEPLLQRFSPN--PGLLLKGLVACTGNQFCGQAIIETKARALKVTEELERL 498 (587)
T ss_pred HhCCCeEEEcCCCCEEECCCCHHHHHHHHHHHHhcCCCCC--CCCCccceeECCCccccCccHHHHHHHHHHHHHHHHHh
Confidence 9998 79999999999999999999999999888888653 46788999999999999999999999999998888643
Q ss_pred HHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEeec--------CceEEEEEcCCCC-CccchhhhccCCChhHHHHHH
Q 005564 528 FEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG--------PNSYQIWLGGTHN-QTTLARTFMNKVKVQELEKVF 598 (691)
Q Consensus 528 l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g--------~~gy~I~lGG~~~-~~rlg~~l~~~v~~eel~~~l 598 (691)
+ .+|.|++||||||||+|++|+++||||+|.. ..+|+||+||+.| ++++|+.+...|+.++++.+|
T Consensus 499 ~-----~lp~k~kI~vSGCpn~C~~~~iaDIG~vG~~~~~~~g~~v~gf~V~lGG~~G~~~~~g~~l~~~Vp~eel~~~v 573 (587)
T PLN02431 499 V-----EVPRPVRMHWTGCPNSCGQVQVADIGFMGCMARDENGKAVEGADIFVGGRVGSDSHLAEEYKKGVPCDELVPVV 573 (587)
T ss_pred h-----cCCCCeEEEEECCcccccccccccEEEEeeeeecCCCccceEEEEEECCcCCCCCccchhhhcCCCHHHHHHHH
Confidence 2 3478999999999999999999999999941 1389999999987 789999999999999999999
Q ss_pred HHHH-HHHHHh
Q 005564 599 EPLF-YYWKQK 608 (691)
Q Consensus 599 ~~ll-~~y~~~ 608 (691)
++++ ++|..+
T Consensus 574 ~~il~~~~~~~ 584 (587)
T PLN02431 574 ADILIEEFGAK 584 (587)
T ss_pred HHHHHHHhhhc
Confidence 9966 455443
No 9
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=8.4e-95 Score=819.75 Aligned_cols=483 Identities=27% Similarity=0.458 Sum_probs=421.4
Q ss_pred CCCCChhhhhhhhcCCCc-cchHHhhhhc-CCCCCHhHHH-HHhhceeeeeccCcccCCccceEEEEEecCCCccCHHHH
Q 005564 68 ETKRSKVEIIKEQSNFIR-YPLNEELLTD-APNVNESATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLY 144 (691)
Q Consensus 68 ~~k~~~~E~iK~~~~~l~-~~~~~~l~~~-~~~~~~~~~~-~lk~~G~y~q~~rd~r~~~~~~fmlRir~pgG~lt~~ql 144 (691)
.+|+||+|+||.+++||+ ...++++++. .+.++++|+. ++||+|+|.|... .+.||||||+|+|.||++||
T Consensus 9 ~~~~n~~E~~K~~~~~~~~~~~i~~~a~~~~~~~~~~d~~~~~~~~G~~~~~~~------~g~fmvRvrip~G~lt~~Ql 82 (513)
T PRK09566 9 GKKLNKIEKNKAEKDGLAVKDELEKFAQIGWEAMDETDLELRLKWLGMFWRPVT------PGKFMLRLRVPNGILTSEQL 82 (513)
T ss_pred cccCCHHHHhhcccCHHHHHHHHHHHHHhCcccCCHHHHhhhheeeEEeeEcCC------CCeEEEEeccCCccCCHHHH
Confidence 468999999999999996 3345666644 4678888886 8999999965211 24799999999999999999
Q ss_pred HHHHHHHHHhC-CCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcC-CCCCCCCCCCcccccCCCC-CChhhhhhHHHHH
Q 005564 145 LTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDYLFAQKTA 221 (691)
Q Consensus 145 ~~la~lA~~yG-~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G-~t~~a~GD~~RNV~acp~~-~~~~~~~d~~~la 221 (691)
+.|+++|++|| +|++|||||||||||||+.+++++++++| .++| ++.++|||++|||++||.. .|+.++.|+++++
T Consensus 83 r~la~ia~~yg~~g~i~lTtRQniql~~i~~~dl~~i~~~L-~~~GL~~~~~~~d~vRnv~~~P~ag~~~~e~~D~~~la 161 (513)
T PRK09566 83 RVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILNRL-KAVGLTSVQSGMDNVRNITGSPVAGIDPDELIDTRPLT 161 (513)
T ss_pred HHHHHHHHHhCCCCeEEEEcccceeecCCcHHHHHHHHHHH-HHcCCCchhccCCCCCCccCCCCCCCCcchhhHHHHHH
Confidence 99999999999 69999999999999999999999999999 8888 7788999999999999975 8889999999999
Q ss_pred HHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCcccccCC
Q 005564 222 ENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTND 301 (691)
Q Consensus 222 ~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~c~~~~~~D 301 (691)
.+|.++|..+ ..++++ | .+|||||||+||||+++|+.+.+||
T Consensus 162 ~~l~~~~~~~----------------------------------~~~~~~--~--~~LPrKfki~vsGc~~~c~~~~i~D 203 (513)
T PRK09566 162 QKLQDMLTNN----------------------------------GEGNPE--F--SNLPRKFNIAIAGGRDNSVHAEIND 203 (513)
T ss_pred HHHHHHhhcc----------------------------------cCCCCc--c--cCCCCceEEEEECCCCCcccccccc
Confidence 9999987521 001222 2 5799999999999999999999999
Q ss_pred EEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHH
Q 005564 302 IGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLIS 380 (691)
Q Consensus 302 Ig~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~~~rd~G~R~~R~~aRlk~li~ 380 (691)
|||+++.++ |. .||+|||||++|..+ |++|..++ ||+++|+++++++|+++|++||+|+||+++||+++|+
T Consensus 204 iG~~~~~~~-~~-~gf~v~vGG~~g~~~------~~~~~~l~~~v~~e~v~~~~~av~~~f~~~g~r~~r~k~Rl~~lv~ 275 (513)
T PRK09566 204 IAFVPAYKD-GV-LGFNVLVGGFFSSQR------CAYAIPLNAWVKPDEVVRLCRAILEVYRDNGLRANRQKGRLMWLID 275 (513)
T ss_pred eEEEEEEEC-Ce-eEEEEEEecccCCCC------CcCceeeeeecCHHHHHHHHHHHHHHHHHhCCcccchhhhHHHHHH
Confidence 999998764 43 699999999998642 56787886 8999999999999999999999999999999999999
Q ss_pred hhchhHHHHHHHHHhCCCCCCCCC--CCccccccccceEecc-CCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEe
Q 005564 381 SWGIEKFRSVVEQYYGKKFEPFRQ--LPEWEFKSHLGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRI 456 (691)
Q Consensus 381 ~~G~e~f~e~l~~~~g~~l~~~~~--~~~~~~~d~~G~~~q~-dG~~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irl 456 (691)
+||.++|++.+++++++++.+..+ ...|...+|+||++|+ +|.|+|++++|+|+++++|++.||++|++||. .||+
T Consensus 276 ~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~G~lt~~~l~~la~ia~~yg~g~irl 355 (513)
T PRK09566 276 EWGIEKFRAAVEAQFGPPLLTAAPGDEIDWEKRDHIGVHPQKQAGLNYVGLHVPVGRLYAEDMFELARLAEVYGSGEIRL 355 (513)
T ss_pred HhhHHHHHHHHHHHhCcccCCcccchhhccccccccceeecCcCCeEEEEEEcCCccCCHHHHHHHHHHHHHhCCCeEEE
Confidence 999999999999999887654322 2345567899999998 58899999999999999999999999999997 7999
Q ss_pred cCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCC
Q 005564 457 TPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYN 536 (691)
Q Consensus 457 T~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p 536 (691)
|++|||+|+||+.+++++|++++...++... .++.+++++||+|+++|+++++||++++..|.++|++. .+ .|
T Consensus 356 T~~Qni~l~~i~~~~v~~l~~~~~~~~~~~~--~~~~~~~~vaC~G~~~C~~a~~dT~~~a~~l~~~l~~~---~~--lp 428 (513)
T PRK09566 356 TVEQNVIIPNIPDENLETFLAEPLLQKFSLE--PGPLARGLVSCTGNQYCNFALIETKNRALALAKELDAE---LD--LP 428 (513)
T ss_pred cCCCCEEEeCCCHHHHHHHHHHHhhccCCCC--CCccccCceeCcCcccccccHhhHHHHHHHHHHHHHHh---cC--CC
Confidence 9999999999999999999999766666543 35778999999999999999999999999998888643 23 47
Q ss_pred CceEEEEEcCCCCCCCCccccEEEEeec-------CceEEEEEcCCCC-CccchhhhccCCChhHHHHHHHHHHHHHHHh
Q 005564 537 ESVVIRVTGCPNGCARPYMAELGLVGDG-------PNSYQIWLGGTHN-QTTLARTFMNKVKVQELEKVFEPLFYYWKQK 608 (691)
Q Consensus 537 ~k~kI~vSGCpn~Ca~~~~aDIGlvG~g-------~~gy~I~lGG~~~-~~rlg~~l~~~v~~eel~~~l~~ll~~y~~~ 608 (691)
.|++||||||||+|++|+++||||+|.. ..+|+||+||+.+ ++++|+.+...|+.++++++++.++..|...
T Consensus 429 ~~~kI~iSGCpn~C~~~~iaDIG~~G~~~~~dg~~~~g~~i~lGG~~g~~~~~g~~~~~~v~~~ev~~~i~~l~~~~~~~ 508 (513)
T PRK09566 429 QPVRIHWTGCPNSCGQPQVADIGLMGTKARKNGKTVEGVDIYMGGKVGKDAKLGECVQKGIPCEDLKPVLKDLLIEQFGA 508 (513)
T ss_pred CceEEEEECChhhhhchhhCCEEEEEEEeecCCcccceEEEEeCCccCccccccchhhcCcCHHHHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999962 2689999999987 7899999999999999999999988777655
Q ss_pred cc
Q 005564 609 RQ 610 (691)
Q Consensus 609 ~~ 610 (691)
.+
T Consensus 509 ~~ 510 (513)
T PRK09566 509 KP 510 (513)
T ss_pred cc
Confidence 43
No 10
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=100.00 E-value=4.1e-75 Score=639.14 Aligned_cols=366 Identities=21% Similarity=0.333 Sum_probs=317.0
Q ss_pred eEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcC-CCCCCCCCCCcccccC
Q 005564 127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAP 205 (691)
Q Consensus 127 ~fmlRir~pgG~lt~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G-~t~~a~GD~~RNV~ac 205 (691)
.||+|||+|+|+||++||++|+++|++||+|++|||||||||||||+.+ ++++++.| .++| ++.++|||.+|||++|
T Consensus 17 g~mvRvr~p~G~lt~~ql~~la~ia~~yg~g~i~lTtRQniql~gv~~~-~~~l~~~l-~~~GL~~~~~~g~~~Rnv~~c 94 (390)
T TIGR02435 17 GLLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGLTAD-HDALSQAL-LAAGLGAAGAAADDIRNIEVS 94 (390)
T ss_pred eeEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEEccccceecccCcc-HHHHHHHH-HHCCCCCccccCCcccccccC
Confidence 5899999999999999999999999999999999999999999999999 99999999 8888 5668999999999999
Q ss_pred CCC-CChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCceE
Q 005564 206 PAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFK 284 (691)
Q Consensus 206 p~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfK 284 (691)
|.+ .|..++.|+++++.+|.+.|.. +++ ..+||||||
T Consensus 95 p~~g~~~~~~~dt~~la~~l~~~l~~--------------------------------------~~~----~~~LPrKfk 132 (390)
T TIGR02435 95 PLAGIDPGEIADTRPLAAELRAALEN--------------------------------------ERA----LLELPPKFS 132 (390)
T ss_pred ccccCCCccccchHHHHHHHHHHHhc--------------------------------------Chh----hhcCCCceE
Confidence 976 5567899999999999988741 111 257999999
Q ss_pred EEEecCCCCCcccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHHh
Q 005564 285 VAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQREN 364 (691)
Q Consensus 285 i~vsg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~eev~~~~~ai~~~~rd~ 364 (691)
|+||||+++|+.+++|||||+++.++ +. .||+|++||+.+. +..++||+++|+++++++++++|+++
T Consensus 133 i~vsgc~~~c~~~~~~DIG~~~~~~~-~~-~gf~v~vGG~~~~-----------~~~~~~v~~~~v~~~v~av~~~~~~~ 199 (390)
T TIGR02435 133 VAIDGGGRLVLLGDTADVRLQALTTG-AG-VAWVVSLAGISTS-----------ARSLVTVAPDAAVPVAVALLRVFVEL 199 (390)
T ss_pred EEEECCCccccCCCCCCEEEEEEecC-CE-EEEEEEEecCCCC-----------CCceEEeCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998864 33 5999999996442 22347899999999999999999999
Q ss_pred CCCCcchhhhHHHHHHhhchhHHHHHHHHHhCCCCCCC-----CCCCccccccccceEeccCCcEEEEEEeCCCCCCHHH
Q 005564 365 GRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPF-----RQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKM 439 (691)
Q Consensus 365 G~R~~R~~aRlk~li~~~G~e~f~e~l~~~~g~~l~~~-----~~~~~~~~~d~~G~~~q~dG~~~v~v~vp~Grit~~q 439 (691)
|+ ++|++|++++||.++|++++++. ..+.+. .+.+++...+++||++|+|+.|+|++++|+|+|++++
T Consensus 200 g~-----~aR~k~li~~~g~e~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~~~~~v~~~~p~G~i~~~~ 272 (390)
T TIGR02435 200 GG-----AARGRDLDDAFLFALALELVEDS--RPLIPDAAEGEAPRPAVDAAAPLGLHPQGDAGVTLGAGLALGQLTAAQ 272 (390)
T ss_pred Cc-----ccHHHHHHHHhHHHHHHHHHHhc--cccCCCccccccccCcccccCCCceeecCCCCeEEEEecCccccCHHH
Confidence 87 59999999999999999999983 222221 1112223457999999999779999999999999999
Q ss_pred HHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHH
Q 005564 440 KKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIP 518 (691)
Q Consensus 440 l~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~ 518 (691)
++.|+++|++||. .||+|+||||+|++|++++++++++.|.+.|+.+.. .++ +.+++||+|+++|+++++||+.++.
T Consensus 273 l~~la~ia~~~g~~~irlT~~Q~l~i~~i~~~~~~~~~~~l~~~gl~~~~-~~~-~~~v~aC~G~~~C~~~~~~t~~~a~ 350 (390)
T TIGR02435 273 LRGLAQLAQALGDGDLRLTPWRALLVLGLPPERADAAQRALAALGLVTSA-SDP-RARIIACTGAPGCASALADTRADAE 350 (390)
T ss_pred HHHHHHHHHHhCCCeEEEcCCcceEEcCCCHHHHHHHHHHHHHCCCCcCC-CCC-eeeEEECCCccccccchhhHHHHHH
Confidence 9999999999998 799999999999999999999999999999998643 344 4569999999999999999999988
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEeecCceE
Q 005564 519 DILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSY 568 (691)
Q Consensus 519 ~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy 568 (691)
+|.+++.. . .+++||||||||+|++|+++||||+|. .++|
T Consensus 351 ~l~~~~~~-------~--~~~~i~vSGC~n~C~~~~~adiG~~G~-~~g~ 390 (390)
T TIGR02435 351 ALAAYCEP-------T--APITVHLSGCAKGCAHPGPAAITLVAA-GAGY 390 (390)
T ss_pred HHHHHhcc-------c--CCcEEEEeCCcccccCCCCCCEEEEec-CCCC
Confidence 87766532 1 139999999999999999999999997 4444
No 11
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=5.2e-46 Score=441.65 Aligned_cols=297 Identities=16% Similarity=0.239 Sum_probs=264.5
Q ss_pred hhhHHHHHHhhchhHHHHHHHHHhCCCC-----CCC---------CC--C-----CccccccccceEeccCCcEEEEEEe
Q 005564 372 YSRMKYLISSWGIEKFRSVVEQYYGKKF-----EPF---------RQ--L-----PEWEFKSHLGWHEQGDGGLFCGLHV 430 (691)
Q Consensus 372 ~aRlk~li~~~G~e~f~e~l~~~~g~~l-----~~~---------~~--~-----~~~~~~d~~G~~~q~dG~~~v~v~v 430 (691)
++-|..+|..-++.+|.+++.++. +.. +|+ .. + +....+|++..+.|+||+|+|++++
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~gc~~c~p~~~~~l~~~~~~~~~~~~~~~~~~~n~~~~~n~Qk~g~~~v~~~~ 571 (847)
T PRK14989 493 RQELFHLIRVEGIKTFEELLAKHG-KGYGCEVCKPTVGSLLASCWNEYILKPQHTPLQDTNDNFLANIQKDGTYSVIPRS 571 (847)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhC-CCCCCchhhHHHHHHHHhcCccccCChhhccccccccccccccccCCeEEEEEEc
Confidence 456778888889999998888754 320 110 00 0 1123588999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchh
Q 005564 431 DNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAI 510 (691)
Q Consensus 431 p~Grit~~ql~~La~iAe~yg~~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~ 510 (691)
|+|++|++||+.||++|++||.++|+|++|||+|+||+.+++++|++.|.++||.+.+++++.+|++++|||+++|++++
T Consensus 572 p~G~lt~~ql~~ia~iA~kyg~~~~iT~~Q~i~L~~i~~~~l~~v~~~L~~~Gl~~~~~~g~~vr~v~aC~G~~~C~~g~ 651 (847)
T PRK14989 572 AGGEITPEGLMAVGRIAREFNLYTKITGSQRIGLFGAQKDDLPEIWRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGV 651 (847)
T ss_pred CCcEeCHHHHHHHHHHHHHHCCcEEEcCCCceEeCCCCHHHHHHHHHHHHHCCCCcCCCCCCCcCceeeCCCCCcccccc
Confidence 99999999999999999999988999999999999999999999999999999999888888899999999999999999
Q ss_pred hHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEeecCceEEEEEcCCCC-CccchhhhccCC
Q 005564 511 TEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHN-QTTLARTFMNKV 589 (691)
Q Consensus 511 ~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~-~~rlg~~l~~~v 589 (691)
.||+.++..|.+++. +++.|+||||+||||||+|++|+++||||+|. .+||+||+||+.| ++++|+++...+
T Consensus 652 ~dt~~la~~l~~~~~------~~~~P~k~ki~vSGC~~~C~~~~i~DiG~i~~-~~G~~v~vGG~~G~~~~~g~~l~~~~ 724 (847)
T PRK14989 652 GDSVGLGVELENRYK------GIRTPHKMKFGVSGCTRECAEAQGKDVGIIAT-EKGWNLYVCGNGGMKPRHADLLAADL 724 (847)
T ss_pred ccHHHHHHHHHHHhc------cCCCCCceEEEEeCCcccccccccccEEEEEe-cCceEEEECCCCCCCCcceeeecCCC
Confidence 999998887766642 56679999999999999999999999999998 6789999999988 799999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhcccCCCcHHHHHHhh--CHHHHHHHH-HhHcCCccccccccccccCCHHHHHHHHHHHHHh
Q 005564 590 KVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRM--GFEKLQELV-EKWEGPAKATARYNLKLFADKETYEAVDELAKLQ 666 (691)
Q Consensus 590 ~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~--G~e~~~~~l-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~a~~~ 666 (691)
+.+++++++++++++|++++++ +|||++|++|+ |++.|++.+ ++.+++++ .| +++|...++.|.|+|
T Consensus 725 ~~~~v~~~i~~~l~~y~~~~~~-~er~~~~~~r~~~g~~~~~~~~~~~~~~~~~-------~l--~~~~~~~~~~~~~~w 794 (847)
T PRK14989 725 DRETLIKYLDRFMMFYIRTADK-LQRTAVWLENLEGGIDYLKAVIIDDKLGLNA-------QL--EEEMARLREAVVCEW 794 (847)
T ss_pred CHHHHHHHHHHHHHHHHHhCcc-cccHHHHHHHhhchHHHHHHHHhccchhHHH-------HH--HHHHHHHHHhccCch
Confidence 9999999999999999999999 99999999999 999999998 56888888 89 999999999999999
Q ss_pred ccchhhhhHHHHHHHHHHhhcCC
Q 005564 667 NKNAHQLAIEVIRNFVASQQNGK 689 (691)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~ 689 (691)
..++. ++...+.|.+|.|.+
T Consensus 795 ~~~~~---~~~~~~~~~~~~~~~ 814 (847)
T PRK14989 795 TETVN---TPSAQTRFKHFINSD 814 (847)
T ss_pred hhhhh---CHHHHHHhhhccCCC
Confidence 99886 566778899999953
No 12
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=9.4e-43 Score=413.39 Aligned_cols=279 Identities=18% Similarity=0.260 Sum_probs=245.5
Q ss_pred hhhHHHHHHhhchhHHHHHHHHHhCCCCC-C---CCC--------C----------CccccccccceEeccCCcEEEEEE
Q 005564 372 YSRMKYLISSWGIEKFRSVVEQYYGKKFE-P---FRQ--------L----------PEWEFKSHLGWHEQGDGGLFCGLH 429 (691)
Q Consensus 372 ~aRlk~li~~~G~e~f~e~l~~~~g~~l~-~---~~~--------~----------~~~~~~d~~G~~~q~dG~~~v~v~ 429 (691)
++-+..+|...++..|.++++++ |+... . .+| + ..+ .+++++++.|+||.|+|+++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~gc~~c~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~qk~g~~~v~~~ 559 (785)
T TIGR02374 482 RDELFEEIQARGFTTFAEVMNQL-GWKTKNGCSTCKPAVQYYLAMLYPGFILDEEATSL-SNDHFLANIQKDGTYSVIPR 559 (785)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHh-CCCCCCCCcccHHhHHHHHHhcCCcccccchhccc-cccceeeccccCCceEEEEe
Confidence 45688888888999998888764 43211 0 111 0 011 35789999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcc
Q 005564 430 VDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPL 508 (691)
Q Consensus 430 vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~ 508 (691)
+|+|++|++||+.|+++|++||. ++|+|++|||+|+||+++++++|++.|.+.|+. .++++.+|++++|+|+++|++
T Consensus 560 ~~~G~lt~~ql~~la~ia~~yg~~~i~iT~~Q~i~l~gi~~~~l~~i~~~L~~~gl~--~~~g~~~r~v~aC~G~~~C~~ 637 (785)
T TIGR02374 560 MYGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDLKMPGYE--HAYGKALRTVKTCVGSQWCRY 637 (785)
T ss_pred cCCcccCHHHHHHHHHHHHHhCCCeEEEcCCceEEECCCCHHHHHHHHHHHHhCCCC--CCCCCCccCcccCCCccccCc
Confidence 99999999999999999999998 799999999999999999999999999999996 467888999999999999999
Q ss_pred hhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEeecCceEEEEEcCCCC-Cccchhhhcc
Q 005564 509 AITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHN-QTTLARTFMN 587 (691)
Q Consensus 509 a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~-~~rlg~~l~~ 587 (691)
++.||+.++.+|.+++. ++..|+||||+||||||+|++++++||||+|. .++|+||+||+.| .+++|+++..
T Consensus 638 g~~ds~~la~~l~~~~~------~~~~p~k~ki~vSGC~~~C~~~~~~DiG~i~~-~~g~~v~vGG~~g~~~~~a~~l~~ 710 (785)
T TIGR02374 638 GNQDSVQLAIQLERRYE------GLRTPHKIKIGVSGCERECAEAAGKDVGVIAT-EKGWNLYVGGNGGTHPRHGDLLAV 710 (785)
T ss_pred chhhHHHHHHHHHHHhc------ccCCCCceEEEEECCccccchhhhCcEEEEEe-cCCeEEEECCcCCCCCcceeeecC
Confidence 99999998887776653 34568999999999999999999999999998 6789999999987 7999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhCHHHHHHHHHhHcCCccccccccccccCCHHHHHHHHHHHHHhc
Q 005564 588 KVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGPAKATARYNLKLFADKETYEAVDELAKLQN 667 (691)
Q Consensus 588 ~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~a~~~~ 667 (691)
.++.+++++++++++++|++++.+ +|||.+|++|+|+++|++.+.+..- +. .| +++|...++.|.|+|.
T Consensus 711 ~~~~e~v~~~i~~~l~~y~~~~~~-~er~~~~i~r~G~~~~~~~~~~~~~-~~-------~l--~~~~~~~~~~~~~~w~ 779 (785)
T TIGR02374 711 DEDEETLIGYIDRFLQYYRETADY-LERTAPWLERLGIDHVREVLFEDDL-RA-------EL--EESMQRDLSLIKCPWK 779 (785)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcc-cchHHHHHHHhChHHHHHHHHhhHH-HH-------HH--HHHHHHHHhhccChhH
Confidence 999999999999999999999998 9999999999999999999975321 55 78 9999999999999999
Q ss_pred cchhh
Q 005564 668 KNAHQ 672 (691)
Q Consensus 668 ~~~~~ 672 (691)
.++.+
T Consensus 780 ~~~~~ 784 (785)
T TIGR02374 780 ETLED 784 (785)
T ss_pred HhccC
Confidence 98864
No 13
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=100.00 E-value=3.3e-41 Score=362.06 Aligned_cols=233 Identities=18% Similarity=0.311 Sum_probs=199.5
Q ss_pred HHHHhhce------eeeeccCcccCCccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCH
Q 005564 104 TQLIKFHG------SYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDL 177 (691)
Q Consensus 104 ~~~lk~~G------~y~q~~rd~r~~~~~~fmlRir~pgG~lt~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l 177 (691)
+.++|||| ++.+.+++ .+.||||+|+|+ .+|++||+.|++||++||+|.+|||||||||||||+.+|+
T Consensus 6 ~~~~~~~~~~~~gv~~~~~~~~-----~~~~mvRv~ip~-~lt~eqLr~LAdiaekyg~g~i~lTtrQnI~l~~I~~edl 79 (341)
T TIGR02066 6 YGKWKYHEVVKPGVIKHVAESG-----DVIYTVKAGTPR-LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKI 79 (341)
T ss_pred ccceEEcccCCCcEEEEECCCC-----CcEEEEEeCCCc-ccCHHHHHHHHHHHHHhCCCeEEEeccCCEEEecCCHHHH
Confidence 44789999 77775443 347999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCc-ccccCCCC-CChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhh
Q 005564 178 KTVMRSIIRSMGSTLGACGDLNR-NVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVK 255 (691)
Q Consensus 178 ~~i~~~L~~~~G~t~~a~GD~~R-NV~acp~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~ 255 (691)
++++++| ++.|++.+++|+.+| ||++||+. .|..+..|+.+++..|.+.|.. .
T Consensus 80 ~~i~~~L-~~~Gl~~~~~G~~vrrni~aC~G~~~C~~a~~dt~~l~~~l~~~l~~-------~----------------- 134 (341)
T TIGR02066 80 QPLIDEL-EEVGFPVGGTGDAVKGNIVHTQGWLHCHIPAIDASGIVKAVMDELYE-------Y----------------- 134 (341)
T ss_pred HHHHHHH-HhccCCCCCCCCccccccccCcCCCCCCcchhchHHHHHHHHHHHHH-------H-----------------
Confidence 9999999 899988889999899 99999985 8999999999998887766531 0
Q ss_pred cccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCcccccCCEEEEEEec--------------------------
Q 005564 256 ARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSD-------------------------- 309 (691)
Q Consensus 256 ~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~c~~~~~~DIg~v~~~~-------------------------- 309 (691)
|....||+||||+||||+++|+.+.++||||+++..
T Consensus 135 ------------------~~~~~lP~KfKI~vSGC~~~C~~~~~~Dig~~g~~~~~p~~~~~~~~~~c~~~~Cv~~CP~~ 196 (341)
T TIGR02066 135 ------------------FTDHKLPAMVRISLSCCANMCGGVHASDIAIVGIHRKPPKINHEAVRNVCEIPSVVAACPTG 196 (341)
T ss_pred ------------------HhcccccccceeccccccccccchhhccccccccccCCcEEcHHHHHhhcCCCceEeeCchh
Confidence 112469999999999999999999999999998632
Q ss_pred ------CC-----------------------------CccceEEEEEcCCCCCcCCcccccCccccccC-CCCH-----H
Q 005564 310 ------EN-----------------------------GEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPK-----E 348 (691)
Q Consensus 310 ------~~-----------------------------g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~-----e 348 (691)
+. ++..||.|++||++|++.+ .|++|+.+. |++. +
T Consensus 197 Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~v~vGG~~g~~~~----~p~lg~~~~~~~~~~~~~~e 272 (341)
T TIGR02066 197 ALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWVGGKLSNARV----MPELSKVVVPWIPNNPPRWP 272 (341)
T ss_pred hceecccCCCCceeeccccCCcCCchHHhCchhhccCCCCCeEEEEEccccCcccc----CCcccceecccccCCCcchH
Confidence 10 2236999999999874321 389998875 7776 7
Q ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHhhchhHHHHHHHH
Q 005564 349 DILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ 393 (691)
Q Consensus 349 ev~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~G~e~f~e~l~~ 393 (691)
++++++++++++|+++|. +++||+++|+|+|+++|.+++..
T Consensus 273 ~~~~~i~~i~~~~~~~~~----~~eR~g~~i~RvG~~~f~~~v~~ 313 (341)
T TIGR02066 273 ELVAYVKKILEAWKANAK----KHERLIEWVERIGWERFFELVGL 313 (341)
T ss_pred HHHHHHHHHHHHHHHcCc----CCccHHHHHHHHhHHHHHHHHCC
Confidence 999999999999999987 36999999999999999998863
No 14
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=2.4e-37 Score=350.98 Aligned_cols=272 Identities=17% Similarity=0.174 Sum_probs=227.9
Q ss_pred ccccceE-ecc-CCcEEEEEEeCCCCCCHHHHHHHHHHHHHhC-C-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCC
Q 005564 411 KSHLGWH-EQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYN-L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLL 486 (691)
Q Consensus 411 ~d~~G~~-~q~-dG~~~v~v~vp~Grit~~ql~~La~iAe~yg-~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~ 486 (691)
..++|++ +|+ +|.|++|+++|+|+||++|++.||++|++|| . .+++|++|||||+||+.+++++|++.|.+.||.+
T Consensus 51 ~~~~G~~~~~~~~g~fmvRvrip~G~lt~~Qlr~la~ia~~yg~~g~i~lTtRQniql~~i~~~dl~~i~~~L~~~GL~~ 130 (513)
T PRK09566 51 LKWLGMFWRPVTPGKFMLRLRVPNGILTSEQLRVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILNRLKAVGLTS 130 (513)
T ss_pred heeeEEeeEcCCCCeEEEEeccCCccCCHHHHHHHHHHHHHhCCCCeEEEEcccceeecCCcHHHHHHHHHHHHHcCCCc
Confidence 3456666 444 5899999999999999999999999999999 4 7999999999999999999999999999999998
Q ss_pred CCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHH-Hhc-CCCCCCceEEEEEcCCCCCCCCccccEEEEeec
Q 005564 487 PRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVF-EKV-GLKYNESVVIRVTGCPNGCARPYMAELGLVGDG 564 (691)
Q Consensus 487 ~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l-~~~-gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g 564 (691)
..+.++.+||+++||+++.|+.++.||.+++.+|.+++.... ... -..+|+||||+||||||+|++++++||||++..
T Consensus 131 ~~~~~d~vRnv~~~P~ag~~~~e~~D~~~la~~l~~~~~~~~~~~~~~~~LPrKfki~vsGc~~~c~~~~i~DiG~~~~~ 210 (513)
T PRK09566 131 VQSGMDNVRNITGSPVAGIDPDELIDTRPLTQKLQDMLTNNGEGNPEFSNLPRKFNIAIAGGRDNSVHAEINDIAFVPAY 210 (513)
T ss_pred hhccCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHhhcccCCCCcccCCCCceEEEEECCCCCcccccccceEEEEEE
Confidence 877788999999999999999999999999988888775311 000 123589999999999999999999999999963
Q ss_pred C---ceEEEEEcCCCCC--ccchhhhccCCChhHHHHHHHHHHHHHHHhccc---CCCcHHHHHHhhCHHHHHHHHHhHc
Q 005564 565 P---NSYQIWLGGTHNQ--TTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWE 636 (691)
Q Consensus 565 ~---~gy~I~lGG~~~~--~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~~ 636 (691)
. .+|+|||||..+. +++|..+..+|+++++++++++++++|++++.+ .++||.++++|+|.++|++.+++++
T Consensus 211 ~~~~~gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~~~~av~~~f~~~g~r~~r~k~Rl~~lv~~~G~e~f~~~v~~~~ 290 (513)
T PRK09566 211 KDGVLGFNVLVGGFFSSQRCAYAIPLNAWVKPDEVVRLCRAILEVYRDNGLRANRQKGRLMWLIDEWGIEKFRAAVEAQF 290 (513)
T ss_pred ECCeeEEEEEEecccCCCCCcCceeeeeecCHHHHHHHHHHHHHHHHHhCCcccchhhhHHHHHHHhhHHHHHHHHHHHh
Confidence 2 4899999998763 557888888999999999999999999998753 2689999999999999999988775
Q ss_pred CCc----------------------c--------ccccccccccCCHHHHHHHHHHHHHhcc-----------chhhhhH
Q 005564 637 GPA----------------------K--------ATARYNLKLFADKETYEAVDELAKLQNK-----------NAHQLAI 675 (691)
Q Consensus 637 ~~~----------------------~--------~~~~~~~~L~~~~~~~~~~~~~a~~~~~-----------~~~~~~~ 675 (691)
+.. . ....|.|+| ++++++.|+++|+++|. -++.+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~G~l--t~~~l~~la~ia~~yg~g~irlT~~Qni~l~~i~~ 368 (513)
T PRK09566 291 GPPLLTAAPGDEIDWEKRDHIGVHPQKQAGLNYVGLHVPVGRL--YAEDMFELARLAEVYGSGEIRLTVEQNVIIPNIPD 368 (513)
T ss_pred CcccCCcccchhhccccccccceeecCcCCeEEEEEEcCCccC--CHHHHHHHHHHHHHhCCCeEEEcCCCCEEEeCCCH
Confidence 320 0 013577888 99999999999998653 4556666
Q ss_pred HHHHHHHHH
Q 005564 676 EVIRNFVAS 684 (691)
Q Consensus 676 ~~~~~~~~~ 684 (691)
+.+.+.+++
T Consensus 369 ~~v~~l~~~ 377 (513)
T PRK09566 369 ENLETFLAE 377 (513)
T ss_pred HHHHHHHHH
Confidence 666655554
No 15
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=100.00 E-value=1.5e-37 Score=321.17 Aligned_cols=222 Identities=25% Similarity=0.433 Sum_probs=199.3
Q ss_pred ceeeeeccCcccCCccceEEEEEecCC-CccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhc
Q 005564 110 HGSYQQYNRDERGAKSYSFMLRTKNPC-GKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSM 188 (691)
Q Consensus 110 ~G~y~q~~rd~r~~~~~~fmlRir~pg-G~lt~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~ 188 (691)
.|+..+.+. .|++||++|. |.+++++|+.|+++|++||+|.+|||+||+++||+|+.++++++..+| +++
T Consensus 20 ~Gvi~r~~~--------t~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L-~~i 90 (317)
T COG2221 20 YGVIKRRDG--------TYTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEEL-REI 90 (317)
T ss_pred CceeeeccC--------cEEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHH-HHc
Confidence 477776543 5999999997 899999999999999999999999999999999999999999999999 899
Q ss_pred CCCCCCCCCCCcccccCCCC-CChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCC
Q 005564 189 GSTLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFP 267 (691)
Q Consensus 189 G~t~~a~GD~~RNV~acp~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~ 267 (691)
|+..|+.||.+|||++||++ .|..++.|+.+++++|.+.|.
T Consensus 91 G~~~G~~G~~vr~i~aC~G~~~C~~a~~Dt~~la~~l~e~f~-------------------------------------- 132 (317)
T COG2221 91 GLPVGSTGPAVRAIVACPGPRTCETALYDTTELARRLEEEFL-------------------------------------- 132 (317)
T ss_pred CCCCCCcchhhhhhhcCcCcccccccccChHHHHHHHHHHhh--------------------------------------
Confidence 99999999999999999997 799999999999999987653
Q ss_pred CCCCCCcCCCCCCCceEEEEecCCCCCcccccCCEEEEEEecC-------------------------------------
Q 005564 268 DSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE------------------------------------- 310 (691)
Q Consensus 268 ~~~e~~yg~~~LPrKfKi~vsg~~~~c~~~~~~DIg~v~~~~~------------------------------------- 310 (691)
...+|.||||+|||||++|+.+..+||||+++.++
T Consensus 133 --------~~~~P~KfKI~vsGCPn~C~r~~~~DigivGv~~P~~~~E~c~gc~~cv~~C~~gAI~~~~~~l~id~~~Ci 204 (317)
T COG2221 133 --------EVPVPYKFKIAVSGCPNDCTRPQAHDIGIVGVWKPKVDEELCRGCGKCVKVCPTGAITWDGKKLKIDGSKCI 204 (317)
T ss_pred --------cCCCCceEEEEeecCCcccccccccceeEEEeecCccCHHHhchhHhHHHhCCCCceeeccceEEEehhhcc
Confidence 14699999999999999999999999999998762
Q ss_pred --------------CCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHHHHHHhCCCCcchhhhH
Q 005564 311 --------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYSRM 375 (691)
Q Consensus 311 --------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~~~rd~G~R~~R~~aRl 375 (691)
.++..|+.|+|||.+|+. .|+.+.++- +.++|++++++++++++|++|++.. ++||
T Consensus 205 ~Cg~Ci~~Cp~~~~~~ek~g~~i~VGGk~Gr~------~~r~g~~~~~~~~~dei~~ii~~~~e~~~~~~~~~---~~Ri 275 (317)
T COG2221 205 GCGKCIRACPKAAFRGEKVGIAILVGGKTGRE------LGRVGKPLVPVEDEDEIIDIIKKTIEVWREYAEKP---GERI 275 (317)
T ss_pred CccHHhhhCChhhcchhhccEEEEEccccCCc------cccccccccccCCHHHHHHHHHHHHHHHHHhcccc---cchH
Confidence 244579999999999875 368888875 6799999999999999999999842 4499
Q ss_pred HHHHHhhchhHHHHHHHHHh
Q 005564 376 KYLISSWGIEKFRSVVEQYY 395 (691)
Q Consensus 376 k~li~~~G~e~f~e~l~~~~ 395 (691)
.++|+|.|+++|++++....
T Consensus 276 gd~I~r~G~~kF~e~i~~~~ 295 (317)
T COG2221 276 GDFIDRVGFEKFLEEILREV 295 (317)
T ss_pred HHHHHHHhHHHHHHHHHHhh
Confidence 99999999999999987644
No 16
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=100.00 E-value=5.2e-38 Score=337.38 Aligned_cols=210 Identities=18% Similarity=0.303 Sum_probs=191.2
Q ss_pred cCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcc-eE
Q 005564 420 GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNI-TA 497 (691)
Q Consensus 420 ~dG~~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r-~v 497 (691)
+++.|++|+++|+ +++++||+.||++|++||. .+|+|++|||+|++|+.+++++|+++|.+.||.+.. .++.+| |+
T Consensus 27 ~~~~~mvRv~ip~-~lt~eqLr~LAdiaekyg~g~i~lTtrQnI~l~~I~~edl~~i~~~L~~~Gl~~~~-~G~~vrrni 104 (341)
T TIGR02066 27 GDVIYTVKAGTPR-LLSVDTLRKLCDIADKYSDGYLRWTIRNNVEFLVSDESKIQPLIDELEEVGFPVGG-TGDAVKGNI 104 (341)
T ss_pred CCcEEEEEeCCCc-ccCHHHHHHHHHHHHHhCCCeEEEeccCCEEEecCCHHHHHHHHHHHHhccCCCCC-CCCcccccc
Confidence 4788999999999 9999999999999999998 799999999999999999999999999999998864 455556 99
Q ss_pred EecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEee--------------
Q 005564 498 MACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD-------------- 563 (691)
Q Consensus 498 ~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~-------------- 563 (691)
++|+|+++|+++++||.+++..|.+.|.+.+.... +|+||||+||||||+|++++++||||+|.
T Consensus 105 ~aC~G~~~C~~a~~dt~~l~~~l~~~l~~~~~~~~--lP~KfKI~vSGC~~~C~~~~~~Dig~~g~~~~~p~~~~~~~~~ 182 (341)
T TIGR02066 105 VHTQGWLHCHIPAIDASGIVKAVMDELYEYFTDHK--LPAMVRISLSCCANMCGGVHASDIAIVGIHRKPPKINHEAVRN 182 (341)
T ss_pred ccCcCCCCCCcchhchHHHHHHHHHHHHHHHhccc--ccccceeccccccccccchhhccccccccccCCcEEcHHHHHh
Confidence 99999999999999999999989888888776544 58999999999999999999999999983
Q ss_pred --------------------c--------------------------------CceEEEEEcCCCC----Cccchhhhcc
Q 005564 564 --------------------G--------------------------------PNSYQIWLGGTHN----QTTLARTFMN 587 (691)
Q Consensus 564 --------------------g--------------------------------~~gy~I~lGG~~~----~~rlg~~l~~ 587 (691)
. ..||.||+||+.+ .|++|+.+.+
T Consensus 183 ~c~~~~Cv~~CP~~Ai~~~~~~~~~~~~id~~~Ci~Cg~Ci~~CP~~a~~~~~~~G~~v~vGG~~g~~~~~p~lg~~~~~ 262 (341)
T TIGR02066 183 VCEIPSVVAACPTGALKPRRDGKNKSLEVDVEKCIYCGNCYTMCPAMPIFDPENDGAAIWVGGKLSNARVMPELSKVVVP 262 (341)
T ss_pred hcCCCceEeeCchhhceecccCCCCceeeccccCCcCCchHHhCchhhccCCCCCeEEEEEccccCccccCCcccceecc
Confidence 0 2579999999764 5889999998
Q ss_pred CCCh-----hHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhCHHHHHHHHHh
Q 005564 588 KVKV-----QELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEK 634 (691)
Q Consensus 588 ~v~~-----eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~ 634 (691)
.++. +++++++++++++|.+++++ +|||++|++|+|+++|++.+..
T Consensus 263 ~~~~~~~~~e~~~~~i~~i~~~~~~~~~~-~eR~g~~i~RvG~~~f~~~v~~ 313 (341)
T TIGR02066 263 WIPNNPPRWPELVAYVKKILEAWKANAKK-HERLIEWVERIGWERFFELVGL 313 (341)
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHcCcC-CccHHHHHHHHhHHHHHHHHCC
Confidence 8887 79999999999999999999 9999999999999999999974
No 17
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=100.00 E-value=3.3e-37 Score=318.65 Aligned_cols=220 Identities=22% Similarity=0.393 Sum_probs=199.1
Q ss_pred ccccceEeccCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCC
Q 005564 411 KSHLGWHEQGDGGLFCGLHVDN-GRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPR 488 (691)
Q Consensus 411 ~d~~G~~~q~dG~~~v~v~vp~-Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~ 488 (691)
.++.|+.++.+++|++|+++|. |.+++++|+.|++||++||. .|++|+||+++|++|++++++++.++|++.||..++
T Consensus 17 ~~~~Gvi~r~~~t~~vRv~~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L~~iG~~~G~ 96 (317)
T COG2221 17 YVGYGVIKRRDGTYTVRVRTPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREIGLPVGS 96 (317)
T ss_pred ccCCceeeeccCcEEEEEecCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHHHHcCCCCCC
Confidence 3789999999999999999987 99999999999999999999 799999999999999999999999999999999876
Q ss_pred CCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEee-----
Q 005564 489 YVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD----- 563 (691)
Q Consensus 489 ~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~----- 563 (691)
.++.+|+++||+|...|.+|+.||..++..|.+. +. +-+.|.||||.+|||||+|++++.+||||+|.
T Consensus 97 -~G~~vr~i~aC~G~~~C~~a~~Dt~~la~~l~e~----f~--~~~~P~KfKI~vsGCPn~C~r~~~~DigivGv~~P~~ 169 (317)
T COG2221 97 -TGPAVRAIVACPGPRTCETALYDTTELARRLEEE----FL--EVPVPYKFKIAVSGCPNDCTRPQAHDIGIVGVWKPKV 169 (317)
T ss_pred -cchhhhhhhcCcCcccccccccChHHHHHHHHHH----hh--cCCCCceEEEEeecCCcccccccccceeEEEeecCcc
Confidence 6899999999999999999999999987755444 43 33568999999999999999999999999995
Q ss_pred ---------------------------------------------------cCceEEEEEcCCCC-C-ccchhhhccCCC
Q 005564 564 ---------------------------------------------------GPNSYQIWLGGTHN-Q-TTLARTFMNKVK 590 (691)
Q Consensus 564 ---------------------------------------------------g~~gy~I~lGG~~~-~-~rlg~~l~~~v~ 590 (691)
...+|.|+|||+.| . ++.|.++....+
T Consensus 170 ~~E~c~gc~~cv~~C~~gAI~~~~~~l~id~~~Ci~Cg~Ci~~Cp~~~~~~ek~g~~i~VGGk~Gr~~~r~g~~~~~~~~ 249 (317)
T COG2221 170 DEELCRGCGKCVKVCPTGAITWDGKKLKIDGSKCIGCGKCIRACPKAAFRGEKVGIAILVGGKTGRELGRVGKPLVPVED 249 (317)
T ss_pred CHHHhchhHhHHHhCCCCceeeccceEEEehhhccCccHHhhhCChhhcchhhccEEEEEccccCCccccccccccccCC
Confidence 02479999999998 3 599999999899
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhCHHHHHHHHHhHcC
Q 005564 591 VQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEG 637 (691)
Q Consensus 591 ~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~~ 637 (691)
++++.++|+.++++|.++++..++|+++|++|+|+++|++.+.....
T Consensus 250 ~dei~~ii~~~~e~~~~~~~~~~~Rigd~I~r~G~~kF~e~i~~~~~ 296 (317)
T COG2221 250 EDEIIDIIKKTIEVWREYAEKPGERIGDFIDRVGFEKFLEEILREVK 296 (317)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHhHHHHHHHHHHhhc
Confidence 99999999999999999998746699999999999999999865543
No 18
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=2.5e-37 Score=367.19 Aligned_cols=206 Identities=22% Similarity=0.337 Sum_probs=189.6
Q ss_pred CccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcCCCCCCCCCCCccc
Q 005564 123 AKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNV 202 (691)
Q Consensus 123 ~~~~~fmlRir~pgG~lt~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G~t~~a~GD~~RNV 202 (691)
.+++.||+|+|+|+|.+|++||+.|+++|++||.|++|||||||||||||+++++++++++| ...|++ .++|+.+|||
T Consensus 549 qk~g~~~v~~~~~~G~lt~~ql~~la~ia~~yg~~~i~iT~~Q~i~l~gi~~~~l~~i~~~L-~~~gl~-~~~g~~~r~v 626 (785)
T TIGR02374 549 QKDGTYSVIPRMYGGRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDL-KMPGYE-HAYGKALRTV 626 (785)
T ss_pred ccCCceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEcCCceEEECCCCHHHHHHHHHHH-HhCCCC-CCCCCCccCc
Confidence 35689999999999999999999999999999999999999999999999999999999999 888876 8999999999
Q ss_pred ccCCCC-CChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCC
Q 005564 203 LAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPR 281 (691)
Q Consensus 203 ~acp~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPr 281 (691)
++||+. +|..+..|+++++.+|.+.+. ...+|+
T Consensus 627 ~aC~G~~~C~~g~~ds~~la~~l~~~~~----------------------------------------------~~~~p~ 660 (785)
T TIGR02374 627 KTCVGSQWCRYGNQDSVQLAIQLERRYE----------------------------------------------GLRTPH 660 (785)
T ss_pred ccCCCccccCcchhhHHHHHHHHHHHhc----------------------------------------------ccCCCC
Confidence 999984 999999999999999876542 246999
Q ss_pred ceEEEEecCCCCCcccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHHH
Q 005564 282 KFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVT 360 (691)
Q Consensus 282 KfKi~vsg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~~ 360 (691)
||||+|||||++|+.+.++||||++.. .||+|||||+.|+. |++|+.+. ++++|++++++++++++
T Consensus 661 k~ki~vSGC~~~C~~~~~~DiG~i~~~------~g~~v~vGG~~g~~-------~~~a~~l~~~~~~e~v~~~i~~~l~~ 727 (785)
T TIGR02374 661 KIKIGVSGCERECAEAAGKDVGVIATE------KGWNLYVGGNGGTH-------PRHGDLLAVDEDEETLIGYIDRFLQY 727 (785)
T ss_pred ceEEEEECCccccchhhhCcEEEEEec------CCeEEEECCcCCCC-------CcceeeecCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999864 48999999998864 88999987 78999999999999999
Q ss_pred HHHhCCCCcchhhhHHHHHHhhchhHHHHHHHH
Q 005564 361 QRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ 393 (691)
Q Consensus 361 ~rd~G~R~~R~~aRlk~li~~~G~e~f~e~l~~ 393 (691)
|++++++ .+|++++|++||+++|++.+++
T Consensus 728 y~~~~~~----~er~~~~i~r~G~~~~~~~~~~ 756 (785)
T TIGR02374 728 YRETADY----LERTAPWLERLGIDHVREVLFE 756 (785)
T ss_pred HHHhCcc----cchHHHHHHHhChHHHHHHHHh
Confidence 9999885 5899999999999999999885
No 19
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=100.00 E-value=3e-37 Score=330.23 Aligned_cols=229 Identities=19% Similarity=0.303 Sum_probs=198.1
Q ss_pred HHHHHhhceeeeeccCcccCCccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHH
Q 005564 103 ATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMR 182 (691)
Q Consensus 103 ~~~~lk~~G~y~q~~rd~r~~~~~~fmlRir~pgG~lt~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~ 182 (691)
+...+|-.|++.|++++ .||+|+|+|+|.+|++|++.|+++|++||+|++|+|||||||||||+.++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~g-------~~~vrv~~p~G~lt~~qlr~la~ia~~yg~g~~~~TtrQ~i~l~~i~~~~~~~v~~ 75 (314)
T TIGR02912 3 NTKALKKNAFRVTKVRG-------KTAIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNK 75 (314)
T ss_pred cHHHHhhCCeEEeecCC-------ceEEEEEccceecCHHHHHHHHHHHHHhCCCeEEEecccceEecCcCHHHHHHHHH
Confidence 35678889999998764 79999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc----C-----CCCCCCCCCCcccccCCCC-CChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChh
Q 005564 183 SIIRSM----G-----STLGACGDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPE 252 (691)
Q Consensus 183 ~L~~~~----G-----~t~~a~GD~~RNV~acp~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~ 252 (691)
.| ++. + ...+.+|+.+|||++||+. .|..+..|+.+++.+|.+.+.
T Consensus 76 ~L-~~~~~gl~~~~~~~~~G~~g~~vR~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~----------------------- 131 (314)
T TIGR02912 76 AL-QPIIEGLEINQEDVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIEKAVF----------------------- 131 (314)
T ss_pred HH-HHHhhcccccccccccccccCCccceeeCCCCCCCCCCcccHHHHHHHHHHHhh-----------------------
Confidence 99 542 2 3456789999999999985 899999999999999876542
Q ss_pred hhhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCCcccccCCEEEEEEecC----------------------
Q 005564 253 VVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE---------------------- 310 (691)
Q Consensus 253 ~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~c~~~~~~DIg~v~~~~~---------------------- 310 (691)
.+|+||||+|||||++|..+..+||||++....
T Consensus 132 -------------------------~~~~k~ki~iSGCp~~C~~~~~~DiG~~g~~~~~~d~~~C~~Cg~C~~~Cp~~a~ 186 (314)
T TIGR02912 132 -------------------------PNDYHVKIALTGCPNDCAKARMHDFGIIGMTEPQYDADRCIGCGACVKVCKKKAV 186 (314)
T ss_pred -------------------------cCCceEEEEEeCCCchhhHHHHhhcccccccCCceeCccCCcchHHHHhcChhhc
Confidence 257899999999999999999999999875210
Q ss_pred ---------------------------------CCccceEEEEEcCCCCCcCCcccccCcccccc-CCCCHHHHHHHHHH
Q 005564 311 ---------------------------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL-GYVPKEDILYAVKA 356 (691)
Q Consensus 311 ---------------------------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l-~~v~~eev~~~~~a 356 (691)
.+...+|.+++||..|+.+ |+++..+ .+++++++++++++
T Consensus 187 ~ai~~~~~~~~id~~~C~~Cg~Cv~~CP~~Al~~~~~~~~~v~~gg~~g~~~------p~~~~~~~~~~~~~~v~~~~~~ 260 (314)
T TIGR02912 187 GALSFENYKVVRDHSKCIGCGECVLKCPTGAWTRSEEKYYKLRLMGRTGKKN------PRLGEDFIKWVDEDSIVKIILN 260 (314)
T ss_pred CceeccCCeEEeCCCcCcCcchhhhhCCHhhcccCcCCcEEEEEcCccCCCC------cchhhhhhhhcCcchhHHHHHH
Confidence 0112469999999998743 7888877 48999999999999
Q ss_pred HHHHHHHhCCCCc-chhhhHHHHHHhhchhHHHHHHHH
Q 005564 357 IVVTQRENGRRDD-RKYSRMKYLISSWGIEKFRSVVEQ 393 (691)
Q Consensus 357 i~~~~rd~G~R~~-R~~aRlk~li~~~G~e~f~e~l~~ 393 (691)
++++|++|+++.+ |+++||+++|+|||+++|++.+.+
T Consensus 261 ~~~~~~~~~~~~~~~~~eR~~~~i~r~g~~~~~~~~~~ 298 (314)
T TIGR02912 261 TYDYITEYIDKNAPGGKEHIGYIVDRTGYQEFKKWALK 298 (314)
T ss_pred HHHHHHHHHhccCCCccchHHHHHHHhhHHHHHHHHhh
Confidence 9999999998766 578999999999999999988754
No 20
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=100.00 E-value=1.9e-36 Score=330.14 Aligned_cols=269 Identities=18% Similarity=0.271 Sum_probs=217.3
Q ss_pred CChhhhhhhhcCCCc--------cchHH----hhhhcCCCCCHhHHHHHhh-ceeeeeccC--cccCCccceEEEEEecC
Q 005564 71 RSKVEIIKEQSNFIR--------YPLNE----ELLTDAPNVNESATQLIKF-HGSYQQYNR--DERGAKSYSFMLRTKNP 135 (691)
Q Consensus 71 ~~~~E~iK~~~~~l~--------~~~~~----~l~~~~~~~~~~~~~~lk~-~G~y~q~~r--d~r~~~~~~fmlRir~p 135 (691)
+|.|-.||+...+.. ..++- .+.+..+++...-+..+.+ -|+|-|..+ |.=++..+.|||||++|
T Consensus 10 ps~v~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wkgg~v~v~gyg~GVigr~~~~~~~~p~~~~~~tvRv~~P 89 (402)
T TIGR02064 10 PSFVSEIKKTAAYRADYQVPVDPEDLLGVLELSYDERKTHWKGGIVSVFGYGGGVIGRYSDQGEKFPGVAEFHTVRVAQP 89 (402)
T ss_pred chHHHHHHHhccccccccccchhHHHHHHHhhhhhcCcccccCceEeeeecCCEEEEEecCCcccCCCcCeEEEEEEecC
Confidence 577777777664432 11222 2234456777554555554 679988432 32234557899999999
Q ss_pred CCc-cCHHHHHHHHHHHHHhCCCeEEecC-CCcEEEcCCCcCCHHHHHHHHHHhcCCCCCCCCCCCcccccCCCC-CChh
Q 005564 136 CGK-VSNQLYLTMDDLADQFGIGTLRLTT-RQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAP-LVRK 212 (691)
Q Consensus 136 gG~-lt~~ql~~la~lA~~yG~g~i~lTt-RQ~iQl~gI~~~~l~~i~~~L~~~~G~t~~a~GD~~RNV~acp~~-~~~~ 212 (691)
+|. +|++||+.|++||++||.|.+++|+ ||||+|+||+.+++++++++| .+.|++++++|+++||+++||++ .|..
T Consensus 90 ~G~~~tteqLR~LaDiaekYGsG~~~~tgstqdIiL~gv~~e~le~i~~eL-~~~G~dlggsG~~vRti~aC~G~~~C~~ 168 (402)
T TIGR02064 90 SGKFYSTDYLRQLCDVWEKYGSGLTNFHGQTGDIVFLGTQTPQLQEIFEEL-TNLGTDLGGSGSNLRTPESCVGPARCEF 168 (402)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEEeccccCEEEcCCCHHHHHHHHHHH-hhcccCCCCCCCCccceecCCCcccCCC
Confidence 998 6999999999999999999999985 899999999999999999999 78898899999999999999985 9999
Q ss_pred hhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCC
Q 005564 213 DYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTD 292 (691)
Q Consensus 213 ~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~ 292 (691)
+..|+++++.+|.+.|.. . +....||+||||+|||||+
T Consensus 169 a~~DT~~l~~~L~~~~~~-------~-----------------------------------~~~~~lP~KfKI~vSGCpn 206 (402)
T TIGR02064 169 ACYDTLKACYELTMEYQD-------E-----------------------------------LHRPAFPYKFKFKFSGCPN 206 (402)
T ss_pred cccccHHHHHHHHHHHHh-------h-----------------------------------hhhccCCcccccccccccc
Confidence 999999999999887631 0 0123699999999999999
Q ss_pred CCcccc-cCCEEEEEEecC-------------------------------------C-----------------------
Q 005564 293 NSVDIL-TNDIGVVVVSDE-------------------------------------N----------------------- 311 (691)
Q Consensus 293 ~c~~~~-~~DIg~v~~~~~-------------------------------------~----------------------- 311 (691)
+|+.+. ++||||++.+.+ +
T Consensus 207 ~C~~~~~~~DIG~iG~~r~~~~id~~~~~~~~~~cg~~~~~~~~v~~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~ 286 (402)
T TIGR02064 207 DCVAAIARSDFAVIGTWKDDIKVDQEAVKAYIAGWGKFDIENEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKMPK 286 (402)
T ss_pred ccccceeccCceeeccccCCccccHHHHHHHHhhccccccchhHhhcCCccccccCCCceEEEcchhcCcCccccccCcc
Confidence 999998 999999986432 0
Q ss_pred ----CccceEEEEEcCCCCCcCCcccccCccccccC-CC----CHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHhh
Q 005564 312 ----GEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YV----PKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSW 382 (691)
Q Consensus 312 ----g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v----~~eev~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~ 382 (691)
|...||.|++||+.|.. ..|++++.+. |+ +.|++.+++++|+++|+++|. +++||+++|+|+
T Consensus 287 a~~~g~~~G~~ilvGGk~~~~-----~g~~lg~~~~~f~~~e~~~eei~~~i~~i~~~~~e~g~----~~ER~g~~i~R~ 357 (402)
T TIGR02064 287 ALHPGDERGVTILIGGKAPIL-----DGAQMGWVVVPFVEAEEPYDEIKELVEKIIDWWDEEGK----NRERIGETIKRL 357 (402)
T ss_pred cccCCCCCeEEEEEccCCCCC-----CCCcccceecccccCCCCHHHHHHHHHHHHHHHHHhCC----ccccHHHHHHHh
Confidence 12468999999998632 2388998875 77 568999999999999999985 689999999999
Q ss_pred chhHHHHHH
Q 005564 383 GIEKFRSVV 391 (691)
Q Consensus 383 G~e~f~e~l 391 (691)
|+++|++.+
T Consensus 358 G~~~f~~~i 366 (402)
T TIGR02064 358 GLQKFLEVI 366 (402)
T ss_pred CHHHHHHHH
Confidence 999999886
No 21
>PLN02431 ferredoxin--nitrite reductase
Probab=100.00 E-value=6.8e-36 Score=341.19 Aligned_cols=272 Identities=14% Similarity=0.133 Sum_probs=227.9
Q ss_pred ccccceEec---cCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCC
Q 005564 411 KSHLGWHEQ---GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL--NVRITPNQNIILCDIRKAWKRPITTALAQAGLL 485 (691)
Q Consensus 411 ~d~~G~~~q---~dG~~~v~v~vp~Grit~~ql~~La~iAe~yg~--~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~ 485 (691)
..++|++.| .+|.|++||++|+|+|+++|++.|++||++||. .++||+||||||+||+.+++++|++.|++.||.
T Consensus 121 ~kw~Gl~~~~~~~~~~fMlRvRiPgG~lt~~Qlr~la~ia~~yg~~G~i~iTtRqniQl~gI~~ed~p~i~~~L~~vGL~ 200 (587)
T PLN02431 121 LKWLGLFHRRKHQYGRFMMRLKLPNGVTTSAQTRYLASVIEKYGEDGCADVTTRQNWQIRGVVLPDVPAILKGLEEVGLT 200 (587)
T ss_pred hhheeeeeecCCCCCceEEEEecCCcccCHHHHHHHHHHHHHhCCCCeEEEecCcceEeCCCCHHHHHHHHHHHHHcCCC
Confidence 457788765 368999999999999999999999999999994 699999999999999999999999999999999
Q ss_pred CCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHh-cC-CCCCCceEEEEEcCCCCCCCCccccEEEEee
Q 005564 486 LPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEK-VG-LKYNESVVIRVTGCPNGCARPYMAELGLVGD 563 (691)
Q Consensus 486 ~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~-~g-l~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~ 563 (691)
+..++++.+||+++||+++.|+.++.||.+++.+|.+++...+.. .. -.+|+||||.||||++.|+.++++||||++.
T Consensus 201 t~~a~gd~vRNI~~~P~aG~~~~e~~Dt~pla~~l~~~~~~~~~~~~~~~~LPrKfkiavsG~~~~~~~~~~nDigf~~~ 280 (587)
T PLN02431 201 SLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSDYITNNGRGNPEITNLPRKWNVCVVGSHDLFEHPHINDLAYMPA 280 (587)
T ss_pred chhccCCCCCCcccCCCCCCCccccccHHHHHHHHHHHhhhcccCCcccccCCCCeEEEEecCccccccccccceEEEEE
Confidence 998899999999999999999999999999998888877421111 01 1358999999999999999999999999996
Q ss_pred cC---ceEEEEEcCCCCCc--cchhhhccCCChhHHHHHHHHHHHHHHHhccc---CCCcHHHHHHhhCHHHHHHHHHhH
Q 005564 564 GP---NSYQIWLGGTHNQT--TLARTFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKW 635 (691)
Q Consensus 564 g~---~gy~I~lGG~~~~~--rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~ 635 (691)
.. .||+|||||..+.. ..+..+..+|++++++++++++++.|++++.+ .+.|+..+++++|+++|++.++++
T Consensus 281 ~~~g~~Gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~v~~av~~~f~d~G~R~~R~kaRlk~li~~~G~e~f~~~v~~~ 360 (587)
T PLN02431 281 TKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVPADDVVPLCKAILEAFRDLGTRGNRQKTRMMWLIDELGVEGFRSEVEKR 360 (587)
T ss_pred EECCceEEEEEEeCCcCCCCccccchhhcccCHHHHHHHHHHHHHHHHHhCCccchhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 32 38999999988743 34556777899999999999999999998754 257999999999999999999866
Q ss_pred cCC-------------------------cc--------ccccccccccCCHHHHHHHHHHHHHhcc-----------chh
Q 005564 636 EGP-------------------------AK--------ATARYNLKLFADKETYEAVDELAKLQNK-----------NAH 671 (691)
Q Consensus 636 ~~~-------------------------~~--------~~~~~~~~L~~~~~~~~~~~~~a~~~~~-----------~~~ 671 (691)
.+. .. ....|.|+| ++++++.|+++|+++|. -++
T Consensus 361 ~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~Qk~~G~~~v~v~vp~Grl--t~~qL~~LA~lA~~yG~g~irlT~~Qni~i~ 438 (587)
T PLN02431 361 MPNGELERAASEDLVDKKWERRDYLGVHPQKQEGLSYVGLHVPVGRL--QAADMDELARLADEYGSGELRLTVEQNIIIP 438 (587)
T ss_pred hccCCCCcccccccccchhcccceeEEEeeccCCeEEEEEEcCCCCC--CHHHHHHHHHHHHHhCCCeEEEcCCCCEEEC
Confidence 520 00 023577888 99999999999998653 466
Q ss_pred hhhHHHHHHHHHH
Q 005564 672 QLAIEVIRNFVAS 684 (691)
Q Consensus 672 ~~~~~~~~~~~~~ 684 (691)
.+..+.+.+.+++
T Consensus 439 ~V~~~~v~~l~~~ 451 (587)
T PLN02431 439 NVPNSKVEALLAE 451 (587)
T ss_pred CCCHHHHHHHHHH
Confidence 6667777666654
No 22
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=100.00 E-value=7.2e-36 Score=342.57 Aligned_cols=266 Identities=18% Similarity=0.188 Sum_probs=221.5
Q ss_pred ccccceEeccC---------------CcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHH
Q 005564 411 KSHLGWHEQGD---------------GGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRP 474 (691)
Q Consensus 411 ~d~~G~~~q~d---------------G~~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~ 474 (691)
-.+.|++.|+| ..||+|+++|+|+||++|++.|+++|++||. .+++|+||||||+||+.+++++
T Consensus 48 lk~~G~y~q~~r~~r~~~~~~~~~~~~~fm~RvriP~G~lt~~Ql~~la~la~~yg~G~i~lTtRQniQL~gI~~~~l~~ 127 (569)
T PRK13504 48 LKFHGSYQQDDRDIRAERAEQKLEPAYQFMLRCRLPGGVITPQQWLALDKLADEYGNGTLRLTTRQTFQFHGILKKNLKP 127 (569)
T ss_pred HhheeeeEecchhhhhhhcccccCcCcceEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEecccceeecCCchHhHHH
Confidence 34678888763 3589999999999999999999999999998 7999999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHH--------H-------------H-hcC
Q 005564 475 ITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAV--------F-------------E-KVG 532 (691)
Q Consensus 475 i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~--------l-------------~-~~g 532 (691)
|++.|.+.||.+..++++.+||+++||+ ++|+.++.||..++.+|.++|... + + ..+
T Consensus 128 i~~~L~~~gl~t~~a~gd~~RNV~~~p~-~~~~~~~~d~~~la~~l~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 206 (569)
T PRK13504 128 VIQTINSVLLDTLAACGDVNRNVMCTPN-PYESRLHAEAYEWAKKISDHLLPRTRAYAEIWLDGEKVATFSGTEEEPIYG 206 (569)
T ss_pred HHHHHHHcCCCcccccCCCCCceecCCC-cccccchHHHHHHHHHHHHHhccccchhHHhhhcCcccccccccccCcccc
Confidence 9999999999988888999999999986 799999999999999888776311 0 0 011
Q ss_pred -CCCCCceEEEEEcCCCCCCCCccccEEEEeecC----ceEEEEEcCCCCC--------ccchhhhccCCChhHHHHHHH
Q 005564 533 -LKYNESVVIRVTGCPNGCARPYMAELGLVGDGP----NSYQIWLGGTHNQ--------TTLARTFMNKVKVQELEKVFE 599 (691)
Q Consensus 533 -l~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~----~gy~I~lGG~~~~--------~rlg~~l~~~v~~eel~~~l~ 599 (691)
..+|+||||+|||||++|++++++||||++... .||+|||||..|. +++|+.+. .|++++++++++
T Consensus 207 ~~~LPrKfKiavsgc~~~c~~~~~~DiG~~~~~~~g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~v~~e~v~~~~~ 285 (569)
T PRK13504 207 KTYLPRKFKIAVAVPPDNDVDVYANDLGFVAIAENGKLVGFNVLVGGGMGMTHGDKETYPRLADELG-YVPPEDVLDVAE 285 (569)
T ss_pred cCCCCCceEEEEEcCCccccCceecceEEEEEecCCcEEEEEEEEEccccCCCCCCCCCCccccccC-ccCHHHHHHHHH
Confidence 136899999999999999999999999999732 3899999998762 67888875 899999999999
Q ss_pred HHHHHHHHhccc---CCCcHHHHHHhhCHHHHHHHHHhHcCCc-----c-----------------c-----cccccccc
Q 005564 600 PLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWEGPA-----K-----------------A-----TARYNLKL 649 (691)
Q Consensus 600 ~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~~~~~-----~-----------------~-----~~~~~~~L 649 (691)
+++++|++++.+ .++||.++++++|+++|++.++++++.. . . ...+.|+|
T Consensus 286 ai~~~~~~~G~r~~r~~aRlk~lv~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~G~~~v~v~vp~Grl 365 (569)
T PRK13504 286 AVVTTQRDYGNRTDRKNARLKYTLERVGLDWFKAEVERRAGKKLEPARPYEFTGRGDRLGWVEGIDGKWHLTLFIENGRI 365 (569)
T ss_pred HHHHHHHHhCCcchhhHHHHHHHHHHHhHHHHHHHHHHHhcCccCCCCCCCccCccceeEEEecCCCcEEEEEEecCEEe
Confidence 999999998754 2479999999999999999998876431 0 0 12577888
Q ss_pred cCCHH----HHHHHHHHHHHh----------ccchhhhhHHHHHH
Q 005564 650 FADKE----TYEAVDELAKLQ----------NKNAHQLAIEVIRN 680 (691)
Q Consensus 650 ~~~~~----~~~~~~~~a~~~----------~~~~~~~~~~~~~~ 680 (691)
+++ +++.|+++|+++ +..+..+..+.+.+
T Consensus 366 --~~~~~~~~l~~La~iA~~yg~~irlT~~Qnl~l~~i~~~~~~~ 408 (569)
T PRK13504 366 --KDYPGRPLKTGLREIAKIHKGDFRLTANQNLIIANVPPSDKAK 408 (569)
T ss_pred --cCCCcHHHHHHHHHHHHHhCCEEEEeCCCCEEEcCCCHHHHHH
Confidence 777 999999999874 44555665555433
No 23
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2.9e-36 Score=358.57 Aligned_cols=206 Identities=19% Similarity=0.294 Sum_probs=187.6
Q ss_pred CccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcC-CCCCCCCCCCcc
Q 005564 123 AKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRN 201 (691)
Q Consensus 123 ~~~~~fmlRir~pgG~lt~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G-~t~~a~GD~~RN 201 (691)
.+++.||||+|+|+|++|++||+.|+++|++||. ++|||||||||||||+++++++++++| .++| .+.+++|+.+||
T Consensus 560 Qk~g~~~v~~~~p~G~lt~~ql~~ia~iA~kyg~-~~~iT~~Q~i~L~~i~~~~l~~v~~~L-~~~Gl~~~~~~g~~vr~ 637 (847)
T PRK14989 560 QKDGTYSVIPRSAGGEITPEGLMAVGRIAREFNL-YTKITGSQRIGLFGAQKDDLPEIWRQL-IEAGFETGHAYAKALRM 637 (847)
T ss_pred ccCCeEEEEEEcCCcEeCHHHHHHHHHHHHHHCC-cEEEcCCCceEeCCCCHHHHHHHHHHH-HHCCCCcCCCCCCCcCc
Confidence 3567999999999999999999999999999994 799999999999999999999999999 8888 555677899999
Q ss_pred cccCCCC-CChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCC
Q 005564 202 VLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLP 280 (691)
Q Consensus 202 V~acp~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LP 280 (691)
|++||+. +|+.+..|+.++|.+|.+.+. ...+|
T Consensus 638 v~aC~G~~~C~~g~~dt~~la~~l~~~~~----------------------------------------------~~~~P 671 (847)
T PRK14989 638 AKTCVGSTWCRYGVGDSVGLGVELENRYK----------------------------------------------GIRTP 671 (847)
T ss_pred eeeCCCCCccccccccHHHHHHHHHHHhc----------------------------------------------cCCCC
Confidence 9999985 999999999999999876641 24699
Q ss_pred CceEEEEecCCCCCcccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHH
Q 005564 281 RKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVV 359 (691)
Q Consensus 281 rKfKi~vsg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~ 359 (691)
+||||+|||||++|..+.++||||++.. .||+|||||+.|+. |++|+.+. ++++++++++++++++
T Consensus 672 ~k~ki~vSGC~~~C~~~~i~DiG~i~~~------~G~~v~vGG~~G~~-------~~~g~~l~~~~~~~~v~~~i~~~l~ 738 (847)
T PRK14989 672 HKMKFGVSGCTRECAEAQGKDVGIIATE------KGWNLYVCGNGGMK-------PRHADLLAADLDRETLIKYLDRFMM 738 (847)
T ss_pred CceEEEEeCCcccccccccccEEEEEec------CceEEEECCCCCCC-------CcceeeecCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999864 48999999999975 88999886 8999999999999999
Q ss_pred HHHHhCCCCcchhhhHHHHHHhh--chhHHHHHHHH
Q 005564 360 TQRENGRRDDRKYSRMKYLISSW--GIEKFRSVVEQ 393 (691)
Q Consensus 360 ~~rd~G~R~~R~~aRlk~li~~~--G~e~f~e~l~~ 393 (691)
+|+++|++ ++|+..+|+|+ |++.|++++.+
T Consensus 739 ~y~~~~~~----~er~~~~~~r~~~g~~~~~~~~~~ 770 (847)
T PRK14989 739 FYIRTADK----LQRTAVWLENLEGGIDYLKAVIID 770 (847)
T ss_pred HHHHhCcc----cccHHHHHHHhhchHHHHHHHHhc
Confidence 99999884 78999999999 99999988764
No 24
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=100.00 E-value=3.1e-35 Score=323.42 Aligned_cols=254 Identities=15% Similarity=0.125 Sum_probs=213.2
Q ss_pred ccCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceE
Q 005564 419 QGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITA 497 (691)
Q Consensus 419 q~dG~~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v 497 (691)
..|| |++|+++|+|+|+++|+++|+++|++||. .||+|++|||||+||+.+ ++++++.|.+.||.+..+.++.+||+
T Consensus 14 ~~dg-~mvRvr~p~G~lt~~ql~~la~ia~~yg~g~i~lTtRQniql~gv~~~-~~~l~~~l~~~GL~~~~~~g~~~Rnv 91 (390)
T TIGR02435 14 AGDG-LLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGLTAD-HDALSQALLAAGLGAAGAAADDIRNI 91 (390)
T ss_pred cCCe-eEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEEccccceecccCcc-HHHHHHHHHHCCCCCccccCCccccc
Confidence 3455 79999999999999999999999999998 799999999999999999 99999999999999877788999999
Q ss_pred EecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEeecCc---eEEEEEcC
Q 005564 498 MACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPN---SYQIWLGG 574 (691)
Q Consensus 498 ~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~~---gy~I~lGG 574 (691)
++||++..|+.+++||++++.+|.+.+....... .+|+||||+||||+|+|++++++||||++...+ +|+|++||
T Consensus 92 ~~cp~~g~~~~~~~dt~~la~~l~~~l~~~~~~~--~LPrKfki~vsgc~~~c~~~~~~DIG~~~~~~~~~~gf~v~vGG 169 (390)
T TIGR02435 92 EVSPLAGIDPGEIADTRPLAAELRAALENERALL--ELPPKFSVAIDGGGRLVLLGDTADVRLQALTTGAGVAWVVSLAG 169 (390)
T ss_pred ccCccccCCCccccchHHHHHHHHHHHhcChhhh--cCCCceEEEEECCCccccCCCCCCEEEEEEecCCEEEEEEEEec
Confidence 9999999999999999999999888876443322 358999999999999999999999999997443 49999999
Q ss_pred CCCC-ccchhhhccCCChhHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhCHHHHHHHHHhHcCC-----------c---
Q 005564 575 THNQ-TTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKWEGP-----------A--- 639 (691)
Q Consensus 575 ~~~~-~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~~~-----------~--- 639 (691)
..+. ..+ .+|++++++++++++++.|++++. .+|++++++++|+|+|++.++++... .
T Consensus 170 ~~~~~~~~-----~~v~~~~v~~~v~av~~~~~~~g~--~aR~k~li~~~g~e~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (390)
T TIGR02435 170 ISTSARSL-----VTVAPDAAVPVAVALLRVFVELGG--AARGRDLDDAFLFALALELVEDSRPLIPDAAEGEAPRPAVD 242 (390)
T ss_pred CCCCCCce-----EEeCHHHHHHHHHHHHHHHHHhCc--ccHHHHHHHHhHHHHHHHHHHhccccCCCccccccccCccc
Confidence 6543 222 479999999999999999999986 59999999999999999998762110 0
Q ss_pred --------c--------ccccccccccCCHHHHHHHHHHHHHhcc-----------chhhhhHHHHHHHHHHh
Q 005564 640 --------K--------ATARYNLKLFADKETYEAVDELAKLQNK-----------NAHQLAIEVIRNFVASQ 685 (691)
Q Consensus 640 --------~--------~~~~~~~~L~~~~~~~~~~~~~a~~~~~-----------~~~~~~~~~~~~~~~~~ 685 (691)
. ....|.|+| ++++++.|+++|+++|. .++.+..+.+.+..+..
T Consensus 243 ~~~~~G~~~q~~~~~~v~~~~p~G~i--~~~~l~~la~ia~~~g~~~irlT~~Q~l~i~~i~~~~~~~~~~~l 313 (390)
T TIGR02435 243 AAAPLGLHPQGDAGVTLGAGLALGQL--TAAQLRGLAQLAQALGDGDLRLTPWRALLVLGLPPERADAAQRAL 313 (390)
T ss_pred ccCCCceeecCCCCeEEEEecCcccc--CHHHHHHHHHHHHHhCCCeEEEcCCcceEEcCCCHHHHHHHHHHH
Confidence 0 013477888 99999999999998653 46666666665555443
No 25
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=100.00 E-value=1.4e-34 Score=332.42 Aligned_cols=270 Identities=14% Similarity=0.142 Sum_probs=229.0
Q ss_pred ccccceEeccC--CcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCC
Q 005564 411 KSHLGWHEQGD--GGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLP 487 (691)
Q Consensus 411 ~d~~G~~~q~d--G~~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~ 487 (691)
-.++|++.|.. +.||+|+++|+|+||++|++.|+++|++||. .++||+||||||+||+.+++++|++.|.+.||.+.
T Consensus 102 ~k~~G~y~~~~~~~~fM~RvripgG~lt~~Q~~~la~ia~~yg~g~~~lTTRq~iQlhgI~~~d~~~i~~~l~~~GL~t~ 181 (593)
T PRK09567 102 WKYHGLFYVAPAQDSYMCRLRIPNGILTHWQFAGLADLADRHGGGYSHVTTRANLQLREIPPEHAVPVLEGLVDLGLTAR 181 (593)
T ss_pred hccceEEEEcccCCeEEEEEEeCCeecCHHHHHHHHHHHHHHCCCeEEEeccccEEeccCCHHHHHHHHHHHHHCCCCCC
Confidence 45788887763 6799999999999999999999999999998 79999999999999999999999999999999998
Q ss_pred CCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEeec---
Q 005564 488 RYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG--- 564 (691)
Q Consensus 488 ~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g--- 564 (691)
.++++.+|||++||+++.|+.++.|+.+++.++.+.+....+..+ +|+||||.||||++.|+.+.++||||++..
T Consensus 182 ~a~gD~~RNV~~~P~ag~~~~e~~D~~~~a~~l~~~~~~~~~~~~--LPrKfkiaisg~~~~~~~~~~nDigf~a~~~~~ 259 (593)
T PRK09567 182 GSGADNIRNVTGSPTAGIDPQELLDTRPYAREWHHHILNDRSLYG--LPRKFNVAFDGGGRIATLEDTNDIGFQAVRVLE 259 (593)
T ss_pred CCCCCCCCCcCCCCCCCCChhhccchHHHHHHHHHHHhCCchhcC--CCCCeEEEEECCCcccccccccceeeEEEEecC
Confidence 889999999999999999999999999998888777643222234 589999999999999999999999999852
Q ss_pred -C-----ceEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHHHHHHhccc---CCCcHHHHHHhhCHHHHHHHHHhH
Q 005564 565 -P-----NSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKW 635 (691)
Q Consensus 565 -~-----~gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~ 635 (691)
. -+|+||+||..|..+++..+...|+++++++++++++..|++++.+ .+.|+.++++++|+|+|++.++++
T Consensus 260 g~~~~~g~gf~v~vGG~~g~~~~a~~~~~~v~~e~v~~~~~Ai~~~f~d~G~R~~R~~aRlk~li~~~G~e~f~~~ve~~ 339 (593)
T PRK09567 260 GAGVAPGVYFRLVLGGITGHKDFARDTGVLLRPEEATAVADAIVRVFIENGDRTNRKKARLKYVLDAWGFDKFLEAVEEK 339 (593)
T ss_pred CccccccceEEEEEecccCCCcchhhhhccCCHHHHHHHHHHHHHHHHHhCCcccchhhHHHHHHHHHCHHHHHHHHHHH
Confidence 1 2699999998876567888877899999999999999999998743 368999999999999999999877
Q ss_pred cCCcc---------------------------------ccccccccccCCHHHHHHHHHHHHHhcc-----------chh
Q 005564 636 EGPAK---------------------------------ATARYNLKLFADKETYEAVDELAKLQNK-----------NAH 671 (691)
Q Consensus 636 ~~~~~---------------------------------~~~~~~~~L~~~~~~~~~~~~~a~~~~~-----------~~~ 671 (691)
++..- ....|.|+| +++++..|+++|++++. -++
T Consensus 340 ~~~~l~~~~~~~~~~~~~~~~~~~~Gv~~Qkq~G~~~v~v~vp~Grl--t~~ql~~LA~iA~~yg~g~irlT~~Qni~l~ 417 (593)
T PRK09567 340 LGRPLTRVPAEAVAPRPAADRFAHVGVHPQKQPGLNWIGVVLPVGRL--TTDQMRGLAKIAARYGDGEIRLTVWQNLLIS 417 (593)
T ss_pred hcccccccchhhcCCCcchhccccceeeccCCCCceEEEEECCCCcc--CHHHHHHHHHHHHHhCCCEEEEeCCCCeEEc
Confidence 54200 012467888 99999999999998653 455
Q ss_pred hhhHHHHHHHHHH
Q 005564 672 QLAIEVIRNFVAS 684 (691)
Q Consensus 672 ~~~~~~~~~~~~~ 684 (691)
.+..+.+.+..+.
T Consensus 418 ~V~~~~~~~l~~~ 430 (593)
T PRK09567 418 GVPDADVAAVEAA 430 (593)
T ss_pred CCCHHHHHHHHHH
Confidence 6666555555443
No 26
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=2.4e-34 Score=328.03 Aligned_cols=253 Identities=18% Similarity=0.171 Sum_probs=210.2
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecC
Q 005564 423 GLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACP 501 (691)
Q Consensus 423 ~~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~ 501 (691)
.|++|+++|+|+||++|+++||++|++||. .++||+||||||+||+.++++++++.|.+.||.+..++++.+|||+ |+
T Consensus 61 ~fmvRvripgG~lt~~Ql~~la~ia~~yg~g~i~lTtRQniQl~gI~~~~l~~v~~~L~~~GL~t~~a~gd~~RnV~-c~ 139 (541)
T TIGR02041 61 QFMLRCRLPGGVITPKQWLAIDKFAREYGNGSIRLTTRQTFQFHGILKRNLKAVHQAIHSAGLDSIATCGDVNRNVL-CT 139 (541)
T ss_pred eeEEEEecCCcEECHHHHHHHHHHHHHhCCCeEEEecccceEEcCCChhHHHHHHHHHHHcCCCccccCCCCCCcee-CC
Confidence 689999999999999999999999999998 7999999999999999999999999999999998888999999987 99
Q ss_pred CCCCCcchhhHHHhhHHHHHHHHHHH--------HH------------hcCC-CCCCceEEEEEcCCCCCCCCccccEEE
Q 005564 502 SLPLCPLAITEAERGIPDILKRIRAV--------FE------------KVGL-KYNESVVIRVTGCPNGCARPYMAELGL 560 (691)
Q Consensus 502 G~~~C~~a~~dt~~~a~~l~~~l~~~--------l~------------~~gl-~~p~k~kI~vSGCpn~Ca~~~~aDIGl 560 (691)
+.|+|+.+..|+..++.+|.+.+... ++ ..+. .+|+||||+|||||++|+.++++||||
T Consensus 140 ~~p~~~~~~~e~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPrKfKi~isg~~~~~~~~~~~DiG~ 219 (541)
T TIGR02041 140 SNPYESELHQEAYEWAKKISEHLLPRTRAYHEIWLDEKKVAGTEEVEPIYGPTYLPRKFKTGVVIPPINDVDVYANDLGF 219 (541)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhccCchhHHHHhhhcccccCCcccCccccccCCCCCcEEEEECCCCccccccccceEE
Confidence 99999999999999888776643211 10 0111 269999999999999999999999999
Q ss_pred EeecC----ceEEEEEcCCCC--------CccchhhhccCCChhHHHHHHHHHHHHHHHhcccC---CCcHHHHHHhhCH
Q 005564 561 VGDGP----NSYQIWLGGTHN--------QTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTK---DESFGDFTNRMGF 625 (691)
Q Consensus 561 vG~g~----~gy~I~lGG~~~--------~~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~~---~Erf~~~i~R~G~ 625 (691)
++... .||+|||||..+ .|++|..+. +|+++++++++++++++|++++.+. +.||+++++++|+
T Consensus 220 ~a~~~~g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~v~~e~v~~~~~ai~~~~~~~g~r~~r~~aRlk~li~~~G~ 298 (541)
T TIGR02041 220 VAIADNGKLIGFNVLIGGGLGMTHGNKATYPRLANEIG-FIPPEHTLAVAEAIVTTQRDFGNRTDRKNARTKYTIDRMGL 298 (541)
T ss_pred EEEEeCCcEEEEEEEEeccccCCCCCcCCCCccccccC-CCCHHHHHHHHHHHHHHHHHhCCccchhhhhHHHHHHHhCH
Confidence 99632 379999999865 267888885 9999999999999999999888651 3699999999999
Q ss_pred HHHHHHHHhHcCCc-----c-----------------c-----cccccccccCC--HHHHHHHHHHHHH----------h
Q 005564 626 EKLQELVEKWEGPA-----K-----------------A-----TARYNLKLFAD--KETYEAVDELAKL----------Q 666 (691)
Q Consensus 626 e~~~~~l~~~~~~~-----~-----------------~-----~~~~~~~L~~~--~~~~~~~~~~a~~----------~ 666 (691)
++|++.++++++.. . . ...+.|+|..+ +.++..|+++|+. |
T Consensus 299 e~f~~~v~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~G~~~v~v~~p~G~l~~~~~~~~l~~la~iA~~~~~~irlT~~Q 378 (541)
T TIGR02041 299 DTFKAEVERRAGITLEPARPYVFTHRGDRYGWVKGIDGNWHLTLFIESGRIADYPDKPLMTGLREIAKIHKGDFRITPNQ 378 (541)
T ss_pred HHHHHHHHHHhCCCCCCCCCccccccccccCeecCCCCcEEEEEEecCceeecCccHHHHHHHHHHHHhcCCeEEEeCCC
Confidence 99999998775421 0 0 23567888332 4588888888863 5
Q ss_pred ccchhhhhHHH
Q 005564 667 NKNAHQLAIEV 677 (691)
Q Consensus 667 ~~~~~~~~~~~ 677 (691)
+..++.+..+.
T Consensus 379 nl~l~~v~~~~ 389 (541)
T TIGR02041 379 NLIIANVPEGG 389 (541)
T ss_pred CEEEcCCCHHH
Confidence 55666776653
No 27
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=100.00 E-value=1.7e-34 Score=314.94 Aligned_cols=208 Identities=16% Similarity=0.327 Sum_probs=188.6
Q ss_pred CCcEEEEEEeCCCC-CCHHHHHHHHHHHHHhCC-eEEecC-CCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceE
Q 005564 421 DGGLFCGLHVDNGR-IAGKMKKTLREIIEKYNL-NVRITP-NQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITA 497 (691)
Q Consensus 421 dG~~~v~v~vp~Gr-it~~ql~~La~iAe~yg~-~irlT~-~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v 497 (691)
.+.|++|+++|.|. +|++||+.|++++++||. .+++|+ +|||+|+||+.+++++|+++|.+.|+..+. .++.+|++
T Consensus 79 ~~~~tvRv~~P~G~~~tteqLR~LaDiaekYGsG~~~~tgstqdIiL~gv~~e~le~i~~eL~~~G~dlgg-sG~~vRti 157 (402)
T TIGR02064 79 AEFHTVRVAQPSGKFYSTDYLRQLCDVWEKYGSGLTNFHGQTGDIVFLGTQTPQLQEIFEELTNLGTDLGG-SGSNLRTP 157 (402)
T ss_pred CeEEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEeccccCEEEcCCCHHHHHHHHHHHhhcccCCCC-CCCCccce
Confidence 36789999999999 599999999999999998 699985 899999999999999999999999998754 67788999
Q ss_pred EecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCc-cccEEEEee-------------
Q 005564 498 MACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPY-MAELGLVGD------------- 563 (691)
Q Consensus 498 ~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~-~aDIGlvG~------------- 563 (691)
++|+|..+|++++.||..++..|.+.+.+.+.... .|+||||+||||||+|++++ ++||||+|+
T Consensus 158 ~aC~G~~~C~~a~~DT~~l~~~L~~~~~~~~~~~~--lP~KfKI~vSGCpn~C~~~~~~~DIG~iG~~r~~~~id~~~~~ 235 (402)
T TIGR02064 158 ESCVGPARCEFACYDTLKACYELTMEYQDELHRPA--FPYKFKFKFSGCPNDCVAAIARSDFAVIGTWKDDIKVDQEAVK 235 (402)
T ss_pred ecCCCcccCCCcccccHHHHHHHHHHHHhhhhhcc--CCccccccccccccccccceeccCceeeccccCCccccHHHHH
Confidence 99999999999999999999999998877665444 47999999999999999999 999999983
Q ss_pred --------------------------------------------------------cCceEEEEEcCCCC---Cccchhh
Q 005564 564 --------------------------------------------------------GPNSYQIWLGGTHN---QTTLART 584 (691)
Q Consensus 564 --------------------------------------------------------g~~gy~I~lGG~~~---~~rlg~~ 584 (691)
...||.|++||+.+ ++++|+.
T Consensus 236 ~~~~~cg~~~~~~~~v~~Cp~~ai~~~~~~~~~id~~~C~~Cm~Ci~~~p~a~~~g~~~G~~ilvGGk~~~~~g~~lg~~ 315 (402)
T TIGR02064 236 AYIAGWGKFDIENEVVNRCPTKAISWDGSKELSIDNRECVRCMHCINKMPKALHPGDERGVTILIGGKAPILDGAQMGWV 315 (402)
T ss_pred HHHhhccccccchhHhhcCCccccccCCCceEEEcchhcCcCccccccCcccccCCCCCeEEEEEccCCCCCCCCcccce
Confidence 03469999999985 4899999
Q ss_pred hccCC----ChhHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhCHHHHHHHH
Q 005564 585 FMNKV----KVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELV 632 (691)
Q Consensus 585 l~~~v----~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l 632 (691)
+..++ +.+++.+++++++++|.++++. +|||++|++|+|++.|++.+
T Consensus 316 ~~~f~~~e~~~eei~~~i~~i~~~~~e~g~~-~ER~g~~i~R~G~~~f~~~i 366 (402)
T TIGR02064 316 VVPFVEAEEPYDEIKELVEKIIDWWDEEGKN-RERIGETIKRLGLQKFLEVI 366 (402)
T ss_pred ecccccCCCCHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHhCHHHHHHHH
Confidence 88887 6689999999999999999998 99999999999999999988
No 28
>PLN00178 sulfite reductase
Probab=100.00 E-value=9.4e-34 Score=325.59 Aligned_cols=270 Identities=15% Similarity=0.182 Sum_probs=226.3
Q ss_pred ccccceEeccC--------CcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHH
Q 005564 411 KSHLGWHEQGD--------GGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQ 481 (691)
Q Consensus 411 ~d~~G~~~q~d--------G~~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~ 481 (691)
-.++|++.|.| +.||+|+++|+|++|++|++.|+++|++||. .++||+||||||+||..++++++++.|.+
T Consensus 89 ~K~~G~y~q~~r~~r~~~~~~fMlRvriPgG~lt~~Q~~~la~iA~~yg~g~l~lTTRq~iQlhgI~~~dl~~i~~~L~~ 168 (623)
T PLN00178 89 IKFHGSYQQDNREKRGGKAYQFMLRTKQPAGKVPNRLYLVMDDLADEFGIGTLRLTTRQTFQLHGVLKKDLKTVMSSIIK 168 (623)
T ss_pred hheeeeeeecCccccCCcCcceEEEEecCCcccCHHHHHHHHHHHHHhCCCeEEEecccceEEcCCCHHHHHHHHHHHHH
Confidence 45788888753 5799999999999999999999999999998 79999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHH--------HH-------------------------
Q 005564 482 AGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRA--------VF------------------------- 528 (691)
Q Consensus 482 ~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~--------~l------------------------- 528 (691)
.|+.+..++++.+|||++||. ++|...+.|+.+++.+|.++|.. ++
T Consensus 169 ~gl~t~~a~gD~~RNV~~~p~-p~~~~e~~d~~~~a~~l~~~l~p~t~~y~e~~ld~~~~~~~~~~~v~~~~~~~~~~~~ 247 (623)
T PLN00178 169 NMGSTLGACGDVNRNVLAPAA-PFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARNDNSHGTN 247 (623)
T ss_pred cCCCcccccCCCCCCeecCCC-cCCchhhhhHHHHHHHHHHhhcccccchhhhhcccccccccccchhhhhhhccccccc
Confidence 999988889999999999995 88988999999999988876531 00
Q ss_pred -H-----hcCC-CCCCceEEEEEcCCCCCCCCccccEEEEeecC-----ceEEEEEcCCCCC--------ccchhhhccC
Q 005564 529 -E-----KVGL-KYNESVVIRVTGCPNGCARPYMAELGLVGDGP-----NSYQIWLGGTHNQ--------TTLARTFMNK 588 (691)
Q Consensus 529 -~-----~~gl-~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~-----~gy~I~lGG~~~~--------~rlg~~l~~~ 588 (691)
. .++. .+|+||||.|||||++|+.++++||||++... .||+|+|||..|. |++|..+. +
T Consensus 248 ~~~~~ep~yg~~~LPRKFKiavsg~~~n~~~~~~nDiG~~a~~~~~g~~~Gf~v~vGGg~g~~~~~~~t~pr~a~~l~-~ 326 (623)
T PLN00178 248 FEDSPEPIYGTQFLPRKFKIAVTVPGDNSVDILTNDIGVVVVSDEAGEPQGYNIYVGGGMGRTHRNETTFPRLADPLG-Y 326 (623)
T ss_pred ccCCccccccccCCCCCeEEEEecCccccccccccceEEEEEEeCCCcEeeEEEEEECccccCCCccCCCCccccccC-c
Confidence 0 0111 36999999999999999999999999998532 3899999998763 78999886 8
Q ss_pred CChhHHHHHHHHHHHHHHHhccc---CCCcHHHHHHhhCHHHHHHHHHhHcCCc--c-----------------------
Q 005564 589 VKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWEGPA--K----------------------- 640 (691)
Q Consensus 589 v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~~~~~--~----------------------- 640 (691)
|+++++++++++++..|++++++ .+.||.++++++|+++|++.++++++.. .
T Consensus 327 v~~e~v~~v~~av~~~~rd~G~R~~R~~aRlk~li~~~G~e~f~~~ve~~~g~~~~~~~~~~~~~~~d~~G~~~q~dG~~ 406 (623)
T PLN00178 327 VPKEDILYAVKAIVATQRDYGRRDDRKQSRMKYLVHSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKSYLGWHEQGDGKL 406 (623)
T ss_pred CCHHHHHHHHHHHHHHHHHhCcccchhhhHHHHHHHHHCHHHHHHHHHHHhcccccCCCCccccccccceeEEEccCCcE
Confidence 99999999999999999998864 2679999999999999999999887641 0
Q ss_pred --ccccccccccCCHHHHHHHHHHHHHh----------ccchhhhhHH---HHHHHHHH
Q 005564 641 --ATARYNLKLFADKETYEAVDELAKLQ----------NKNAHQLAIE---VIRNFVAS 684 (691)
Q Consensus 641 --~~~~~~~~L~~~~~~~~~~~~~a~~~----------~~~~~~~~~~---~~~~~~~~ 684 (691)
....|.|+| .+++++.|+++|+++ +..++.+..+ ++.+.+++
T Consensus 407 ~v~l~vp~Gri--t~~~l~~La~iAe~yg~~iRlT~~Qnlil~~I~~~~~~~i~~~L~~ 463 (623)
T PLN00178 407 FYGVHVDNGRI--KGEAKKALREVIEKYNLPVRLTPNQNLILCDIRPAWKEPITAALAA 463 (623)
T ss_pred EEEEecCCeec--CHHHHHHHHHHHHHhCCcEEEeCCCCEEEcCCCHHHHHHHHHHHHh
Confidence 012577888 999999999999874 4456666555 34444543
No 29
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=100.00 E-value=2.5e-33 Score=320.58 Aligned_cols=266 Identities=18% Similarity=0.172 Sum_probs=217.8
Q ss_pred ccccceEeccC-----------CcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHH
Q 005564 411 KSHLGWHEQGD-----------GGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTA 478 (691)
Q Consensus 411 ~d~~G~~~q~d-----------G~~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~ 478 (691)
-.++|++.|.| +.||+|+++|+|+||++|++.|++||++||. .++||+||||||+||+.++++++++.
T Consensus 42 lK~~G~y~q~~r~~r~~~~~~~~~fM~RiriPgG~lt~~q~~~ia~ia~~yg~g~~~iTtRq~iql~gi~~~~~~~~~~~ 121 (577)
T TIGR02042 42 LKFHGSYQQDNRDNRGKGQEKDYQFMLRTKNPGGYVPPQLYLTLDDLADEYGNGTLRATTRQTFQLHGILKKNLKTVIST 121 (577)
T ss_pred HhheeeeeecCccccccccCccceEEEEEecCCcccCHHHHHHHHHHHHHhCCCcEEEEcccceEeCCCCHHHHHHHHHH
Confidence 35678888743 2789999999999999999999999999998 69999999999999999999999999
Q ss_pred HHHCCCCCCCCCCCCcceEEecCCCCCCcc-hhhHHHhhHHHHHHHHH--------------------------HH----
Q 005564 479 LAQAGLLLPRYVDPLNITAMACPSLPLCPL-AITEAERGIPDILKRIR--------------------------AV---- 527 (691)
Q Consensus 479 L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~-a~~dt~~~a~~l~~~l~--------------------------~~---- 527 (691)
|.+.|+.+..++++.+||||+||+ +.|.. .+.++..++.+|.+.|. ..
T Consensus 122 l~~~~l~t~~a~gd~~RNV~~~P~-~~~~~~~~~~~~~~a~~i~~~~~p~t~a~~e~~ld~~~~~~~~~~~~~~~~~~~~ 200 (577)
T TIGR02042 122 IVKNLGSTLGACGDLNRNVMAPPA-PFRKRPEYEFAREYADNIADLLTPQSGAYYELWLDGEKVMSAEPDPEVVAARNDN 200 (577)
T ss_pred HHHhCCCceeccCCCCCCeecCCC-ccccchhHHHHHHHHHHHHHhhcccccchhheecccccccccccchhhhhhhhcc
Confidence 999999888889999999999997 79987 67888888877777531 00
Q ss_pred ---------HH-hc-CCCCCCceEEEEEcCCCCCCCCccccEEEEeec----C-ceEEEEEcCCCC-C-------ccchh
Q 005564 528 ---------FE-KV-GLKYNESVVIRVTGCPNGCARPYMAELGLVGDG----P-NSYQIWLGGTHN-Q-------TTLAR 583 (691)
Q Consensus 528 ---------l~-~~-gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g----~-~gy~I~lGG~~~-~-------~rlg~ 583 (691)
.+ .+ +..+|+||||+|||||++|+.++++||||++.. . .||+|||||..| . |++|.
T Consensus 201 ~~~~~~~~~~~~~~~~~~LPRKFKi~vsg~~~~~~~~~~nDlgf~a~~~~~g~~~Gf~v~vGGglg~~~~~~~t~p~~a~ 280 (577)
T TIGR02042 201 SHGTNFADSPEPLYGTQYLPRKFKIAVTVPGDNSIDLFTQDIGLVVVSNERGELEGFNIYVGGGMGRTHNKEETFARLAD 280 (577)
T ss_pred cccccccCCccccccccCCCCCceEEEEcCCCCcccceecceEEEEEEeCCCcEeeEEEEEecccCCCCCCccccchhcc
Confidence 00 01 124799999999999999999999999999852 1 389999999887 2 57888
Q ss_pred hhccCCChhHHHHHHHHHHHHHHHhccc---CCCcHHHHHHhhCHHHHHHHHHhHcCCc--c------------------
Q 005564 584 TFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWEGPA--K------------------ 640 (691)
Q Consensus 584 ~l~~~v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~~~~~--~------------------ 640 (691)
.+. +|+++++++++++++..|++++++ .++|+.++++++|+|+|++.++++++.. .
T Consensus 281 ~l~-~v~~e~v~~~~~av~~~~rd~G~R~nR~~aRlk~li~~~G~e~f~~~ve~~~~~~~~~~~~~~~~~~~d~~G~~~q 359 (577)
T TIGR02042 281 PLG-YVPKEDIYYAVKAIVATQRDYGDRDDRRHARMKYLISDWGIEKFREVVEQYFGKKIAPVRELPEFEYKDYLGWHEQ 359 (577)
T ss_pred ccC-cCCHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHCHHHHHHHHHHHhccccCCcccCCcccccccceEEEC
Confidence 885 899999999999999999998753 3799999999999999999999887631 0
Q ss_pred -------ccccccccccCCH--HHHHHHHHHHHH----------hccchhhhhHHHH
Q 005564 641 -------ATARYNLKLFADK--ETYEAVDELAKL----------QNKNAHQLAIEVI 678 (691)
Q Consensus 641 -------~~~~~~~~L~~~~--~~~~~~~~~a~~----------~~~~~~~~~~~~~ 678 (691)
....|.|+|..+. ++.+.|+++|+. |+..++.+..+.+
T Consensus 360 ~dG~~~v~l~vp~Grl~~~~~~~l~~~LaeIA~~yg~~irlT~~Qnl~l~~V~~~~~ 416 (577)
T TIGR02042 360 GDGKWFLGLHIDSGRVKDDGNWQLKKALREIVEKYNLPVRLTPNQNIILYDIQPEWK 416 (577)
T ss_pred CCceEEEEEEecCceecCCchHHHHHHHHHHHHHhCCCEEEcCCCCeEECCCCHHHH
Confidence 0235778883322 566899999986 4445666655544
No 30
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=2.5e-33 Score=314.56 Aligned_cols=281 Identities=21% Similarity=0.321 Sum_probs=241.4
Q ss_pred hhhhHHHHHHhhchhHHHHHHHHHhCCCC-----CCCC-----------CCC-----ccccccccceEeccCCcEEEEEE
Q 005564 371 KYSRMKYLISSWGIEKFRSVVEQYYGKKF-----EPFR-----------QLP-----EWEFKSHLGWHEQGDGGLFCGLH 429 (691)
Q Consensus 371 ~~aRlk~li~~~G~e~f~e~l~~~~g~~l-----~~~~-----------~~~-----~~~~~d~~G~~~q~dG~~~v~v~ 429 (691)
.+.-++.+|..-|+.+|.++.++. ++.. .|+. ..+ .-+..+| .+.|+||+|++.++
T Consensus 482 ~~~~~~~~i~~~~~~~~~~v~~~~-~~~~gc~~c~pa~~~~l~~~~~~~~~~~~~s~~~~~~~h--aniqkdgTysvvPr 558 (793)
T COG1251 482 SRDEVVHLIRAKGLKTFPEVMNVL-GWKTGCAKCRPAINYYLASCWPDEYEDDEQSRLQNERDH--ANIQKDGTYSVVPR 558 (793)
T ss_pred CHHHHHHHHHHhccCCHHHHHHHh-cccCCcceechhhccceeeeccCccCcchhhhhhcccch--hhcccCCeEEEecc
Confidence 456788899999999998888763 3321 1110 001 0122345 67899999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcc
Q 005564 430 VDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPL 508 (691)
Q Consensus 430 vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~ 508 (691)
+|+|++++++|++|+++|++||. .+++|..|.|-|.|++++++|++|+.|... ++++++...|.+.+|||..||++
T Consensus 559 m~GG~~~~~~L~~Iadva~ky~l~~vK~Tg~Qri~l~G~k~edLp~~w~~l~~~---sg~ay~k~lrtvK~Cvg~~~Cr~ 635 (793)
T COG1251 559 MPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMA---SGHAYGKALRTVKTCVGSTFCRF 635 (793)
T ss_pred ccCcccCHHHHHHHHHHHHHhCcceeeccCCceeeecCCCcccchhHHHhcccc---chhHHHHhhhhHhhCCCcchhhh
Confidence 99999999999999999999999 589999999999999999999999988554 77889999999999999999999
Q ss_pred hhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEeecCceEEEEEcCCCC-Cccchhhhcc
Q 005564 509 AITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHN-QTTLARTFMN 587 (691)
Q Consensus 509 a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~-~~rlg~~l~~ 587 (691)
+..||..+...|.+++ .+++.|+|+|+.+||||++|+.+.+.|+|++++ ..||++|+||+.| .++.++++..
T Consensus 636 g~qds~~Lgi~le~~~------~gl~~P~k~k~~vSgCpr~CaEa~~KDvGii~t-~~G~~l~vgG~~g~~~r~a~~~~~ 708 (793)
T COG1251 636 GTQDSVGLGIRLEKRY------EGLRTPHKVKMAVSGCPRNCAEAGIKDVGIIGT-EKGWNLYVGGNGGMKPRHADLLAK 708 (793)
T ss_pred CccchhhHhHHHHHHh------ccCCCCcceeEeeccCCcccccccCcceEEEec-ccCceEEeccccCcchhhhhhhhh
Confidence 9999999887776665 378889999999999999999999999999998 8899999999998 8999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHhcccCCCcHHHHHHhhCHHHHHHHH-HhHcCCccccccccccccCCHHHHHHHHHHHHHh
Q 005564 588 KVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELV-EKWEGPAKATARYNLKLFADKETYEAVDELAKLQ 666 (691)
Q Consensus 588 ~v~~eel~~~l~~ll~~y~~~~~~~~Erf~~~i~R~G~e~~~~~l-~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~a~~~ 666 (691)
..++++++.++.+++++|++.+.. .||++.|++|+|++++++.+ .+.+.... .+ +..|+.....+ ++|
T Consensus 709 ~~~e~e~l~~i~~~~~~yr~~~~~-leR~~~wi~~~Gl~~~k~~v~~d~~~r~~-------~~--e~~~~~~~~~~-~~w 777 (793)
T COG1251 709 VLTEEEVLEYIDAFLQYYRETADY-LERTAPWLDRLGLEHIKEVVLDDPEGRKA-------LL--EREMFRLKFAQ-DPW 777 (793)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhcchHHHHHHhhccHhHHHH-------HH--HHHHHHHHhcc-CcH
Confidence 999999999999999999999988 99999999999999999966 34443333 45 88899999999 999
Q ss_pred ccchhhhhH
Q 005564 667 NKNAHQLAI 675 (691)
Q Consensus 667 ~~~~~~~~~ 675 (691)
...+.++..
T Consensus 778 ~~~~~~~~~ 786 (793)
T COG1251 778 KETVEDPQA 786 (793)
T ss_pred HhhhcChhh
Confidence 998876543
No 31
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=100.00 E-value=2.2e-32 Score=292.70 Aligned_cols=213 Identities=24% Similarity=0.370 Sum_probs=182.1
Q ss_pred cceEecc-CCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHC--CCC--CC
Q 005564 414 LGWHEQG-DGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQA--GLL--LP 487 (691)
Q Consensus 414 ~G~~~q~-dG~~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~--Gl~--~~ 487 (691)
-|+..|+ +|.|++++++|+|++|++||+.||++|++||. .+|+|++|||+|+||+.++++++++.|++. |+. ..
T Consensus 10 ~~~~~~~~~g~~~vrv~~p~G~lt~~qlr~la~ia~~yg~g~~~~TtrQ~i~l~~i~~~~~~~v~~~L~~~~~gl~~~~~ 89 (314)
T TIGR02912 10 NAFRVTKVRGKTAIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNKALQPIIEGLEINQE 89 (314)
T ss_pred CCeEEeecCCceEEEEEccceecCHHHHHHHHHHHHHhCCCeEEEecccceEecCcCHHHHHHHHHHHHHHhhccccccc
Confidence 3778888 58999999999999999999999999999997 799999999999999999999999999863 332 11
Q ss_pred ----CCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEee
Q 005564 488 ----RYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD 563 (691)
Q Consensus 488 ----~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~ 563 (691)
...++.+|++++|+|+++|++++.||+.++..|.+.+. +.|+||+|+||||||+|++++++||||+|.
T Consensus 90 ~~~~G~~g~~vR~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~--------~~~~k~ki~iSGCp~~C~~~~~~DiG~~g~ 161 (314)
T TIGR02912 90 DVQKGYSASGTRNITACIGNRVCPFANYDTTKFAKRIEKAVF--------PNDYHVKIALTGCPNDCAKARMHDFGIIGM 161 (314)
T ss_pred ccccccccCCccceeeCCCCCCCCCCcccHHHHHHHHHHHhh--------cCCceEEEEEeCCCchhhHHHHhhcccccc
Confidence 12456789999999999999999999998777655441 236799999999999999999999999884
Q ss_pred c------------------------------------------------------------CceEEEEEcCCCC--Cccc
Q 005564 564 G------------------------------------------------------------PNSYQIWLGGTHN--QTTL 581 (691)
Q Consensus 564 g------------------------------------------------------------~~gy~I~lGG~~~--~~rl 581 (691)
. ..+|.+++||..+ .+++
T Consensus 162 ~~~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~~~~id~~~C~~Cg~Cv~~CP~~Al~~~~~~~~~v~~gg~~g~~~p~~ 241 (314)
T TIGR02912 162 TEPQYDADRCIGCGACVKVCKKKAVGALSFENYKVVRDHSKCIGCGECVLKCPTGAWTRSEEKYYKLRLMGRTGKKNPRL 241 (314)
T ss_pred cCCceeCccCCcchHHHHhcChhhcCceeccCCeEEeCCCcCcCcchhhhhCCHhhcccCcCCcEEEEEcCccCCCCcch
Confidence 1 1359999999887 4889
Q ss_pred hhhhccCCChhHHHHHHHHHHHHHHHh---cc-cCCCcHHHHHHhhCHHHHHHHHHh
Q 005564 582 ARTFMNKVKVQELEKVFEPLFYYWKQK---RQ-TKDESFGDFTNRMGFEKLQELVEK 634 (691)
Q Consensus 582 g~~l~~~v~~eel~~~l~~ll~~y~~~---~~-~~~Erf~~~i~R~G~e~~~~~l~~ 634 (691)
+..+...++.+++++++++++++|.++ ++ ..+|||++|++|+|+++|++.+.+
T Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~eR~~~~i~r~g~~~~~~~~~~ 298 (314)
T TIGR02912 242 GEDFIKWVDEDSIVKIILNTYDYITEYIDKNAPGGKEHIGYIVDRTGYQEFKKWALK 298 (314)
T ss_pred hhhhhhhcCcchhHHHHHHHHHHHHHHHhccCCCccchHHHHHHHhhHHHHHHHHhh
Confidence 999999999999999999999998774 22 127999999999999999988743
No 32
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.1e-30 Score=286.33 Aligned_cols=266 Identities=19% Similarity=0.210 Sum_probs=219.3
Q ss_pred cccceEec-cCCcEEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCC
Q 005564 412 SHLGWHEQ-GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRY 489 (691)
Q Consensus 412 d~~G~~~q-~dG~~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~ 489 (691)
.+.|++.| .++.||+|+++|+|.||++|+++|+++|++||. .+++|+||||||+||..+++++|++.|.+.|+.+.++
T Consensus 45 ~~~G~y~q~~~~~~MlRvriPgG~ls~~q~r~l~~iA~~yg~g~~~iTtRQniQ~hgI~~~d~~~i~~~l~~vgl~ti~~ 124 (510)
T COG0155 45 KFDGLYLQEPDHAFMLRVRIPGGILSPKQLRALADIARRYGRGTIELTTRQNIQFHGIRKKDVPEILAELASVGLHTIAT 124 (510)
T ss_pred hhcceeecccccceeEEEecCCCccCHHHHHHHHHHHHHhCCCeEEEeecccceecccccccHHHHHHHHHHcCCcchhh
Confidence 46799988 578999999999999999999999999999999 7999999999999999999999999999999999888
Q ss_pred CCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcC--CCCCCceEEEEEcCCCCCCCCccccEEEEeecC--
Q 005564 490 VDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVG--LKYNESVVIRVTGCPNGCARPYMAELGLVGDGP-- 565 (691)
Q Consensus 490 ~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~g--l~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~-- 565 (691)
+++..||++++|-+..-...++|...++. .++..+.... ..+|+||||.|+|||.+|+..+++||||++...
T Consensus 125 ~gd~~Rnv~~~P~ag~~~~ei~D~r~~~~----~~~~~l~~~~~~~~LPRKFkiav~g~~~~~v~~~~~Di~~~a~~~~~ 200 (510)
T COG0155 125 AGDVARNVTGDPLAGLDADEIADPRPLAE----ILRIWLDGEKGFAYLPRKFKIAVDGGPDNDVDVLINDIGFVAIKEND 200 (510)
T ss_pred ccccccceecCcccccchhhcccchhHHH----HHHHHhcCccchhcCCcceEEEEecCcccchhhhccceeEEEecccC
Confidence 99999998887777777777888775433 3333333321 236899999999999999999999999999732
Q ss_pred --ceEEEEEcCCCC-C-ccchhhhccCCChhHHHHHHHHHHHHHHHhccc---CCCcHHHHHHhhCHHHHHHHHHhHcCC
Q 005564 566 --NSYQIWLGGTHN-Q-TTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWEGP 638 (691)
Q Consensus 566 --~gy~I~lGG~~~-~-~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~~~~ 638 (691)
.||+|+|||..+ . +..+..+...|+.+++.+++++++..|++++.+ .+.|+..+++++|.|+|++.++.+++.
T Consensus 201 ~~~Gf~v~VGGglg~~~~~~~~~~~~~v~~~~~~~~~~aiv~~~~d~G~R~nr~~aR~k~lv~~~G~E~f~~~ve~~~g~ 280 (510)
T COG0155 201 GLLGFNVLVGGGLGRTHPKTAPRLAEFVPPEDVLEVVEAIVRVYRDYGRRANRKKARLKYLVEALGVEKFRREVEPRLGK 280 (510)
T ss_pred CccceEEEEccccccCCcchhhHHhhccCHHHHHHHHHHHHHHHHhcchhhhhhhhhHHHHHHHhChHHHHHHHHHhhCc
Confidence 389999999988 4 679999999999999999999999999997643 378999999999999999999987763
Q ss_pred c--c-------------------------ccccccccccCCHHHHHHHHHHHHH-----------hccchhhhhHHHHHH
Q 005564 639 A--K-------------------------ATARYNLKLFADKETYEAVDELAKL-----------QNKNAHQLAIEVIRN 680 (691)
Q Consensus 639 ~--~-------------------------~~~~~~~~L~~~~~~~~~~~~~a~~-----------~~~~~~~~~~~~~~~ 680 (691)
. . ....+.||| .++-...+++.+.+ ||.-+.+++.+.+.+
T Consensus 281 ~~~~~~~~~~~~~~d~~Gw~~~~~g~~~~g~~v~~Grl--~~~~~~~l~~~~~~~~~~eiRlT~~QnLii~~v~~~~~~~ 358 (510)
T COG0155 281 PFEPARPREFTGNGDHIGWVPQKDGLWHLGLAVPNGRL--KAEGLIPLATEAEEIGFGEIRLTPNQNLIIPNVPEAELEA 358 (510)
T ss_pred ccCccccccccCCCCceeEEEcCCCcEEEEEecceeee--cCccchHHHHHHHHHhhccEEeccCcceEecCCCHHHHHH
Confidence 1 0 034677888 66654445555544 666777776665555
Q ss_pred HHH
Q 005564 681 FVA 683 (691)
Q Consensus 681 ~~~ 683 (691)
-..
T Consensus 359 i~~ 361 (510)
T COG0155 359 ILR 361 (510)
T ss_pred HHH
Confidence 443
No 33
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=99.96 E-value=2.6e-29 Score=242.80 Aligned_cols=153 Identities=41% Similarity=0.684 Sum_probs=128.2
Q ss_pred CCCCCcccccCCCC-CChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCC
Q 005564 195 CGDLNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPI 273 (691)
Q Consensus 195 ~GD~~RNV~acp~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~ 273 (691)
.||.+|||++||+. +|..+..|+.+++.+|.+.|.. .
T Consensus 1 ~g~~vrnv~aC~g~~~C~~a~~dt~~la~~l~~~~~~------------------------------------------~ 38 (157)
T PF01077_consen 1 SGDTVRNVTACPGSGFCPLALIDTKPLARELEDYLEE------------------------------------------R 38 (157)
T ss_dssp -SSSBHHEEESTGGGTBTT-SSBHHHHHHHHHHHTHH------------------------------------------H
T ss_pred CCCCCcccccCCChhhCchHHhCHHHHhhHhhhcccc------------------------------------------c
Confidence 48999999999985 9999999999999999977631 1
Q ss_pred cCCCCCCCceEEEEecCCCCCcccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC---CCCHHHH
Q 005564 274 YGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG---YVPKEDI 350 (691)
Q Consensus 274 yg~~~LPrKfKi~vsg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~---~v~~eev 350 (691)
|....||+||||+|||||++|..+.++||||+++..+.+. .||+|||||++|++ |+++..+. +++.|++
T Consensus 39 ~~~~~lp~k~kI~isGCpn~C~~~~i~DIG~~g~~~~~~~-~g~~v~vGG~~g~~-------~~~~~~~~~~~~~~~ee~ 110 (157)
T PF01077_consen 39 FEDPNLPRKFKIAISGCPNSCARPQINDIGFIGVKKPNGE-EGFDVYVGGGLGRH-------PRLGRELALAGFVPEEEV 110 (157)
T ss_dssp HHCSCSSS-BEEEEESSTTSTTSGGGSSEEEEEEEESTCE-EEEEEEES-BESTS-------TBEBEEEEEEEEEEGGGH
T ss_pred ccccccccccccceeecccccccccccccccceeeecccc-ceeeeeecccccCC-------CCccceeeccccccHHHH
Confidence 2236799999999999999999999999999999876332 39999999999986 66666554 7899999
Q ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHhhchhHHHHHHHHHhCCCC
Q 005564 351 LYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKF 399 (691)
Q Consensus 351 ~~~~~ai~~~~rd~G~R~~R~~aRlk~li~~~G~e~f~e~l~~~~g~~l 399 (691)
++++++++++|+ |++.+++++||+++|+|+|+++|++.++++++++|
T Consensus 111 ~~~i~~il~~y~--~~~~~~~~er~~~~i~r~G~e~~~~~v~~~~~~~~ 157 (157)
T PF01077_consen 111 LEVIEAILEYYR--GNREARKKERFKDFIERLGFEKFREEVEERLGHKF 157 (157)
T ss_dssp HHHHHHHHHHHH--S-HSSGTT-SHHHHHHHHHHHHHHHHHHHTSCGG-
T ss_pred HHHHHHHHHHHH--HhccCCCCCCHHHHHHHHCHHHHHHHHHHHhCcCC
Confidence 999999999999 88888999999999999999999999999988653
No 34
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=99.96 E-value=5.5e-29 Score=240.59 Aligned_cols=145 Identities=29% Similarity=0.615 Sum_probs=127.6
Q ss_pred CCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEeecC---c-
Q 005564 491 DPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGP---N- 566 (691)
Q Consensus 491 ~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~---~- 566 (691)
++.+||+++|||+++|++++.||.+++..|.+++...+... .+|+||+|+||||||+|++++++||||+|... +
T Consensus 2 g~~vrnv~aC~g~~~C~~a~~dt~~la~~l~~~~~~~~~~~--~lp~k~kI~isGCpn~C~~~~i~DIG~~g~~~~~~~~ 79 (157)
T PF01077_consen 2 GDTVRNVTACPGSGFCPLALIDTKPLARELEDYLEERFEDP--NLPRKFKIAISGCPNSCARPQINDIGFIGVKKPNGEE 79 (157)
T ss_dssp SSSBHHEEESTGGGTBTT-SSBHHHHHHHHHHHTHHHHHCS--CSSS-BEEEEESSTTSTTSGGGSSEEEEEEEESTCEE
T ss_pred CCCCcccccCCChhhCchHHhCHHHHhhHhhhccccccccc--ccccccccceeecccccccccccccccceeeeccccc
Confidence 56789999999999999999999999999998888776544 45899999999999999999999999999732 1
Q ss_pred eEEEEEcCCCC-Cccchhhhc--cCCChhHHHHHHHHHHHHHH--HhcccCCCcHHHHHHhhCHHHHHHHHHhHcCC
Q 005564 567 SYQIWLGGTHN-QTTLARTFM--NKVKVQELEKVFEPLFYYWK--QKRQTKDESFGDFTNRMGFEKLQELVEKWEGP 638 (691)
Q Consensus 567 gy~I~lGG~~~-~~rlg~~l~--~~v~~eel~~~l~~ll~~y~--~~~~~~~Erf~~~i~R~G~e~~~~~l~~~~~~ 638 (691)
+|+|||||+.+ .++++..+. ..++.++++++++.++++|+ +++++ +|||++|++|+|+|+|++.++++++.
T Consensus 80 g~~v~vGG~~g~~~~~~~~~~~~~~~~~ee~~~~i~~il~~y~~~~~~~~-~er~~~~i~r~G~e~~~~~v~~~~~~ 155 (157)
T PF01077_consen 80 GFDVYVGGGLGRHPRLGRELALAGFVPEEEVLEVIEAILEYYRGNREARK-KERFKDFIERLGFEKFREEVEERLGH 155 (157)
T ss_dssp EEEEEES-BESTSTBEBEEEEEEEEEEGGGHHHHHHHHHHHHHS-HSSGT-T-SHHHHHHHHHHHHHHHHHHHTSCG
T ss_pred eeeeeecccccCCCCccceeeccccccHHHHHHHHHHHHHHHHHhccCCC-CCCHHHHHHHHCHHHHHHHHHHHhCc
Confidence 89999999988 788988888 58899999999999999999 88888 99999999999999999999988763
No 35
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.90 E-value=1.3e-23 Score=236.83 Aligned_cols=203 Identities=24% Similarity=0.334 Sum_probs=181.5
Q ss_pred ccceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcCCCCCCCCCCCcccc
Q 005564 124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVL 203 (691)
Q Consensus 124 ~~~~fmlRir~pgG~lt~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G~t~~a~GD~~RNV~ 203 (691)
+++.|.++.|+|||.++|++|++|+++|++||..++.+|.-|.|-|.|++++||+++|.+|... +..+-|-.+|.|.
T Consensus 549 kdgTysvvPrm~GG~~~~~~L~~Iadva~ky~l~~vK~Tg~Qri~l~G~k~edLp~~w~~l~~~---sg~ay~k~lrtvK 625 (793)
T COG1251 549 KDGTYSVVPRMPGGVTNPEELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMA---SGHAYGKALRTVK 625 (793)
T ss_pred cCCeEEEeccccCcccCHHHHHHHHHHHHHhCcceeeccCCceeeecCCCcccchhHHHhcccc---chhHHHHhhhhHh
Confidence 4678999999999999999999999999999999999999999999999999999999999444 3345566799999
Q ss_pred cCCCC-CChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCc
Q 005564 204 APPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRK 282 (691)
Q Consensus 204 acp~~-~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrK 282 (691)
.||+. +|.....|+..+.-+|.+.+ ....+|.|
T Consensus 626 ~Cvg~~~Cr~g~qds~~Lgi~le~~~----------------------------------------------~gl~~P~k 659 (793)
T COG1251 626 TCVGSTFCRFGTQDSVGLGIRLEKRY----------------------------------------------EGLRTPHK 659 (793)
T ss_pred hCCCcchhhhCccchhhHhHHHHHHh----------------------------------------------ccCCCCcc
Confidence 99986 99988889999988886653 23679999
Q ss_pred eEEEEecCCCCCcccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHHHH
Q 005564 283 FKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQ 361 (691)
Q Consensus 283 fKi~vsg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~~~ 361 (691)
+|++|||||.+|+.+.+.|+|++++. .||++||||--|.+ |+.++.+. -.++|++++++.+++.+|
T Consensus 660 ~k~~vSgCpr~CaEa~~KDvGii~t~------~G~~l~vgG~~g~~-------~r~a~~~~~~~~e~e~l~~i~~~~~~y 726 (793)
T COG1251 660 VKMAVSGCPRNCAEAGIKDVGIIGTE------KGWNLYVGGNGGMK-------PRHADLLAKVLTEEEVLEYIDAFLQYY 726 (793)
T ss_pred eeEeeccCCcccccccCcceEEEecc------cCceEEeccccCcc-------hhhhhhhhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999765 48999999987764 89999887 479999999999999999
Q ss_pred HHhCCCCcchhhhHHHHHHhhchhHHHHHHH
Q 005564 362 RENGRRDDRKYSRMKYLISSWGIEKFRSVVE 392 (691)
Q Consensus 362 rd~G~R~~R~~aRlk~li~~~G~e~f~e~l~ 392 (691)
|++++ ..+|+..+|+++|++.|++++.
T Consensus 727 r~~~~----~leR~~~wi~~~Gl~~~k~~v~ 753 (793)
T COG1251 727 RETAD----YLERTAPWLDRLGLEHIKEVVL 753 (793)
T ss_pred HHHHH----HHHHHHHHhhhcchHHHHHHhh
Confidence 99987 5799999999999999998654
No 36
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.4e-21 Score=204.80 Aligned_cols=267 Identities=15% Similarity=0.166 Sum_probs=206.5
Q ss_pred cccceEecc-----CCc---EEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHC
Q 005564 412 SHLGWHEQG-----DGG---LFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQA 482 (691)
Q Consensus 412 d~~G~~~q~-----dG~---~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~ 482 (691)
.+.|++.|. +|. ||+|.++|+|..+++|..++.+++++||. .++||+||++||+||=..+++.+.+-+.+.
T Consensus 118 KfhGiy~qddRd~r~gr~y~FM~R~klP~Gvtt~qq~l~lddls~k~G~gtlklTTRqtfQihGVlkknlk~~lrgi~kv 197 (638)
T KOG0560|consen 118 KFHGIYHQDDRDIRYGRSYSFMMRAKLPNGVTTPQQWLALDDLSDKYGNGTLKLTTRQTFQIHGVLKKNLKETLRGIAKV 197 (638)
T ss_pred HHhhhhhhcchhhhcchhhhhhheecCCCCCCCHHHHHHHHHHHHhhCCceeeeeeeceeeeeeeehhhhHHHHHHHHHH
Confidence 467888883 366 78999999999999999999999999999 699999999999999999999999999999
Q ss_pred CCCCCCCCCCCcceEEecCCCCC---CcchhhHHHh-hHHHHH-------HHHH---HHHHh--------------cCC-
Q 005564 483 GLLLPRYVDPLNITAMACPSLPL---CPLAITEAER-GIPDIL-------KRIR---AVFEK--------------VGL- 533 (691)
Q Consensus 483 Gl~~~~~~~~~~r~v~aC~G~~~---C~~a~~dt~~-~a~~l~-------~~l~---~~l~~--------------~gl- 533 (691)
++.+-+++++..||++ |+++|+ ....+.|+-. ++..++ +..- +.++. +|-
T Consensus 198 ~ltTL~a~gD~~RNv~-~sa~P~~~kd~~qi~dt~k~is~~llP~T~~y~e~w~e~~q~ve~rkv~Gn~~~d~epiygpt 276 (638)
T KOG0560|consen 198 GLTTLGACGDVNRNVV-GSANPINGKDHEQIVDTAKNISALLLPYTNLYHEFWTEGPQVVEARKVHGNADVDNEPIYGPT 276 (638)
T ss_pred Hhhhhhhhcccccccc-ccCCCccccCHHHHHHHHHHHhhhhCCccchHHHHhhcCcHHhhhhccCCCcccccccccCcc
Confidence 9999889999999965 445544 4566666622 211111 0000 00000 011
Q ss_pred CCCCceEEEEEcCCCCCCCCccccEEEEeec----CceEEEEEcCCCCC--------ccchhhhccCCChhHHHHHHHHH
Q 005564 534 KYNESVVIRVTGCPNGCARPYMAELGLVGDG----PNSYQIWLGGTHNQ--------TTLARTFMNKVKVQELEKVFEPL 601 (691)
Q Consensus 534 ~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g----~~gy~I~lGG~~~~--------~rlg~~l~~~v~~eel~~~l~~l 601 (691)
-+|+|||+.|.+-|-+-..++.+|||+++.. ..||+|+|||..+. ||+|.++. +|+.+++..+++++
T Consensus 277 yLPRKfkv~Vavp~dn~vd~~tnDva~v~i~end~~~GfNv~VGGgmgtthr~ekt~prla~~~g-yVptddIl~~vkaI 355 (638)
T KOG0560|consen 277 YLPRKFKVCVAVPPDNDVDVLTNDVALVAINENDGVFGFNVLVGGGMGTTHRNEKTYPRLAELDG-YVPTDDILPLVKAI 355 (638)
T ss_pred cCccceeEEEecCCCccccccccceeEEEEeccCCceeeEEEeccccCCcccchhhccccccccc-ccchhhhHHHhhhh
Confidence 1689999999999999999999999999964 35899999997651 68887665 89999999999999
Q ss_pred HHHHHHhccc---CCCcHHHHHHhhCHHHHHHHHHhHcCCc----c--c-----------------------cccccccc
Q 005564 602 FYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKWEGPA----K--A-----------------------TARYNLKL 649 (691)
Q Consensus 602 l~~y~~~~~~---~~Erf~~~i~R~G~e~~~~~l~~~~~~~----~--~-----------------------~~~~~~~L 649 (691)
+..|++++.+ +..|+...++.+|.+.|++.+++|.+.- . . .-.++||+
T Consensus 356 li~qRd~G~R~nRk~aRmkylid~lGVe~Fr~~VEe~~g~KfE~~r~~~~~~we~~dyfGwh~q~~gl~f~glhVe~GRv 435 (638)
T KOG0560|consen 356 LIVQRDHGDRGNRKHARMKYLIDELGVEGFRTKVEEYMGKKFEPGRSEPNKQWERRDYFGWHKQEEGLSFVGLHVENGRV 435 (638)
T ss_pred eeeehhccCccchhhhhhhhhHHhhhhHHHHHHHHHHhcccCCcCcCCcchhhccccccccccCCCCceEEEEEcccccc
Confidence 9999999865 3689999999999999999999998731 0 0 22567888
Q ss_pred cCCHHHHHHHHHHHHH-----------hccchhhhhHHHHHHHH
Q 005564 650 FADKETYEAVDELAKL-----------QNKNAHQLAIEVIRNFV 682 (691)
Q Consensus 650 ~~~~~~~~~~~~~a~~-----------~~~~~~~~~~~~~~~~~ 682 (691)
++.+.......+++ |+..+..+.++-.+..+
T Consensus 436 --e~l~~ktglRev~e~~~~e~rlT~nQniii~nv~te~~~~i~ 477 (638)
T KOG0560|consen 436 --EALDMKTGLREVAEYGSGELRLTVNQNIIIPNVETEKTEAIL 477 (638)
T ss_pred --ccchhhhHHHHHHHhhcceeeecccccEEecccchhhhHHHH
Confidence 88777775554444 45555666665544443
No 37
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=99.62 E-value=6.4e-16 Score=128.80 Aligned_cols=59 Identities=32% Similarity=0.644 Sum_probs=56.6
Q ss_pred ceEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHH
Q 005564 126 YSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI 184 (691)
Q Consensus 126 ~~fmlRir~pgG~lt~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L 184 (691)
+.||+|+++|+|++|++|++.|+++|++||.|.+|+|+||||||+||+.+++++++++|
T Consensus 8 g~~~v~~~~~~G~i~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L 66 (69)
T PF03460_consen 8 GFYMVRIRIPGGRISAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEEL 66 (69)
T ss_dssp TEEEEEEB-GGGEEEHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHH
T ss_pred eEEEEEEeCCCEEECHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999
No 38
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=99.49 E-value=3.2e-14 Score=118.57 Aligned_cols=66 Identities=32% Similarity=0.481 Sum_probs=60.7
Q ss_pred EeccCCc--EEEEEEeCCCCCCHHHHHHHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHC
Q 005564 417 HEQGDGG--LFCGLHVDNGRIAGKMKKTLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQA 482 (691)
Q Consensus 417 ~~q~dG~--~~v~v~vp~Grit~~ql~~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~ 482 (691)
|+|+||. |++++++|+|++++++++.|+++|++||. .||+|++|||+|+||+++++++|++.|+++
T Consensus 1 ~~qk~~~g~~~v~~~~~~G~i~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~~ 69 (69)
T PF03460_consen 1 HPQKDGDGFYMVRIRIPGGRISAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKEA 69 (69)
T ss_dssp EECTTSTTEEEEEEB-GGGEEEHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHHT
T ss_pred CCCCcCCeEEEEEEeCCCEEECHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHcC
Confidence 5788744 89999999999999999999999999996 799999999999999999999999999874
No 39
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=99.34 E-value=1.1e-11 Score=131.22 Aligned_cols=156 Identities=18% Similarity=0.330 Sum_probs=117.7
Q ss_pred ccccccceEeccCCcEEEEEEeCCCCCCHHHHHHHHHH-HHHhCCeEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCC
Q 005564 409 EFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREI-IEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLP 487 (691)
Q Consensus 409 ~~~d~~G~~~q~dG~~~v~v~vp~Grit~~ql~~La~i-Ae~yg~~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~ 487 (691)
+++-|+|+.+.+.+ ..|.+.+.- .|.-+ ++--|..||++=. +-+.+++.--++.|+..||...
T Consensus 201 dyPLHlGvTEAG~~--------~~G~iKSa~--gig~LL~~GIGDTiRVSLt------~~P~~EV~va~~IL~slglr~~ 264 (360)
T PRK00366 201 DYPLHLGVTEAGMG--------FKGTVKSAA--GLGALLQEGIGDTIRVSLT------ADPVEEVKVGQEILQSLGLRSR 264 (360)
T ss_pred CCCceecccCCCCC--------CCceehhHH--HHHHHHHhcCCCeEEEeCC------CCCHHHHHHHHHHHHHcCCccC
Confidence 35669999988765 467776542 22322 2333556777533 3346778888999999999753
Q ss_pred CCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcC-CCCCCCCccccEEEEeecCc
Q 005564 488 RYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPYMAELGLVGDGPN 566 (691)
Q Consensus 488 ~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGC-pn~Ca~~~~aDIGlvG~g~~ 566 (691)
. +++++||+ |+....|+..++.++.+++. +++ .+++|+|+|| +|+|+.++.+|||+.|. .+
T Consensus 265 g------~~IisCPg---CgR~~~D~~~la~~vee~~~------~~~--~PlkIAVmGC~VNgpGEa~~aDIGIaG~-~~ 326 (360)
T PRK00366 265 G------PEVISCPT---CGRTEFDVIQELAEVEQRLE------HIK--MPLKVAVMGCVVNGPGEAKEADIGIAGG-NP 326 (360)
T ss_pred C------CeEEECCC---CCCCcccHHHHHHHHHHHhc------CCC--CCcEEEEeCCCCCCCCchhhCcEeEecC-CC
Confidence 2 57899998 99999999998887777763 443 3499999999 59999999999999995 77
Q ss_pred eEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHHHHHH
Q 005564 567 SYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQ 607 (691)
Q Consensus 567 gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~~y~~ 607 (691)
+|.||.||.. ...++.+++.+.+...++.|.+
T Consensus 327 ~~~vf~~Gk~---------v~kv~~~~~~~~l~~~i~~~~~ 358 (360)
T PRK00366 327 KGPVFVDGEK---------IKTLPEENIVEELEAEIEAYAE 358 (360)
T ss_pred ceEEEECCEE---------eeeeChHhHHHHHHHHHHHHHh
Confidence 8999999974 2368888888888888877754
No 40
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=98.48 E-value=7e-07 Score=95.27 Aligned_cols=110 Identities=18% Similarity=0.243 Sum_probs=82.7
Q ss_pred cCCHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhh
Q 005564 174 KKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEV 253 (691)
Q Consensus 174 ~~~l~~i~~~L~~~~G~t~~a~GD~~RNV~acp~~~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~ 253 (691)
.+.++-.++-| +++|+-.. -+||++||+ |.....|+..++.++.+.|.
T Consensus 246 ~~EV~va~~IL-~slglr~~-----g~~IisCPg--CgR~~~D~~~la~~vee~~~------------------------ 293 (360)
T PRK00366 246 VEEVKVGQEIL-QSLGLRSR-----GPEVISCPT--CGRTEFDVIQELAEVEQRLE------------------------ 293 (360)
T ss_pred HHHHHHHHHHH-HHcCCccC-----CCeEEECCC--CCCCcccHHHHHHHHHHHhc------------------------
Confidence 34454444444 77774332 279999996 98889999999999987753
Q ss_pred hhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCC-CCCcccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcc
Q 005564 254 VKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPT-DNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLE 332 (691)
Q Consensus 254 ~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~-~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~ 332 (691)
...+| |||||+||. ++|..+..+|||+++ ...+|.||+||..
T Consensus 294 ----------------------~~~~P--lkIAVmGC~VNgpGEa~~aDIGIaG------~~~~~~vf~~Gk~------- 336 (360)
T PRK00366 294 ----------------------HIKMP--LKVAVMGCVVNGPGEAKEADIGIAG------GNPKGPVFVDGEK------- 336 (360)
T ss_pred ----------------------CCCCC--cEEEEeCCCCCCCCchhhCcEeEec------CCCceEEEECCEE-------
Confidence 13466 999999994 999999999999984 3358999999863
Q ss_pred cccCccccccCCCCHHHHHHHHHHHHHHH
Q 005564 333 TTFPRLGEQLGYVPKEDILYAVKAIVVTQ 361 (691)
Q Consensus 333 ~t~p~~a~~l~~v~~eev~~~~~ai~~~~ 361 (691)
+..|+.+++++.+...++-|
T Consensus 337 ---------v~kv~~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 337 ---------IKTLPEENIVEELEAEIEAY 356 (360)
T ss_pred ---------eeeeChHhHHHHHHHHHHHH
Confidence 23478888888777776544
No 41
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=97.94 E-value=0.00016 Score=76.60 Aligned_cols=161 Identities=22% Similarity=0.399 Sum_probs=113.3
Q ss_pred ccccccceEeccCCcEEEEEEeCCCCCCHHHHHHHHHH-HHHhCCeEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCC
Q 005564 409 EFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREI-IEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLP 487 (691)
Q Consensus 409 ~~~d~~G~~~q~dG~~~v~v~vp~Grit~~ql~~La~i-Ae~yg~~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~ 487 (691)
+++-|+|+.+.+.|. .|.+.+.- +|.-+ ++--|..||++ |.+=+.+++.--.+.|+..|+...
T Consensus 194 dyPLHLGvTEAG~~~--------~G~VkSa~--alg~LL~eGIGDTIRVS------Lt~~P~~EV~V~~eILqslglR~~ 257 (361)
T COG0821 194 DYPLHLGVTEAGMGF--------KGIVKSAA--ALGALLSEGIGDTIRVS------LTADPVEEVKVAQEILQSLGLRSR 257 (361)
T ss_pred CCCcccceecccCcc--------cceehHHH--HHHHHHHhcCCceEEEe------cCCCchhhhHHHHHHHHHhCcccc
Confidence 356689999887653 35665442 23333 33335556654 222236667777788999998753
Q ss_pred CCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcC-CCCCCCCccccEEEEeecCc
Q 005564 488 RYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPYMAELGLVGDGPN 566 (691)
Q Consensus 488 ~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGC-pn~Ca~~~~aDIGlvG~g~~ 566 (691)
. -+++|||+ |+-..+|....+.++.+++. .+ ..+++|+|-|| -|+=+....+|||+.|.+.+
T Consensus 258 ~------v~~iaCP~---CGR~~~dv~~~~~~~~~~~~------~~--~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~ 320 (361)
T COG0821 258 G------VEVIACPT---CGRTEFDVIQTLNEVEQRLE------HL--KTPLKVAVMGCVVNGPGEAKHADIGIAGGGKG 320 (361)
T ss_pred C------ceEEECCC---CCceeehHHHHHHHHHHHhh------cc--CCCceEEEEEeEecCCcchhccceeeecCCCC
Confidence 2 46899974 88888887776666666553 22 34599999999 59999999999999997666
Q ss_pred eEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHHHHHHhccc
Q 005564 567 SYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT 611 (691)
Q Consensus 567 gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~ 611 (691)
.-.+|++|.. .+.++.+++.+-+..+++.|.+++.+
T Consensus 321 ~~~~f~~g~~---------~~~~~~~~~~eel~~~i~~~~~~~~~ 356 (361)
T COG0821 321 SGPVFVKGEI---------IKKLPEEDIVEELEALIEAYAEERDG 356 (361)
T ss_pred eeEEEECCeE---------EEecChhhHHHHHHHHHHHHHHHhhh
Confidence 6788888863 23588899999999999888877654
No 42
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=97.89 E-value=0.00011 Score=78.03 Aligned_cols=151 Identities=21% Similarity=0.304 Sum_probs=103.8
Q ss_pred ccccccceEeccCCcEEEEEEeCCCCCCHHHHHHHHHH-HHHhCCeEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCC
Q 005564 409 EFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREI-IEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLP 487 (691)
Q Consensus 409 ~~~d~~G~~~q~dG~~~v~v~vp~Grit~~ql~~La~i-Ae~yg~~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~ 487 (691)
+++-|+|+.+.+.+ ..|.+.+.- .|.-+ ++--|..||++=. +=+.+++..-++.|+..||...
T Consensus 192 dyPLHlGVTEAG~~--------~~G~IKSai--gig~LL~~GIGDTIRVSLT------~dP~~EV~va~~IL~slglr~~ 255 (346)
T TIGR00612 192 DYPLHLGVTEAGMG--------VKGIVKSSA--GIGILLARGIGDTIRVSLT------DDPTHEVPVAFEILQSLGLRAR 255 (346)
T ss_pred CCCceeccccCCCC--------CCchhHHHH--HHHHHHhhCCCCeEEEECC------CCcHHHHHHHHHHHHHcCCCcC
Confidence 35669999988765 467776652 22222 2333456776532 3346778888999999999753
Q ss_pred CCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCC-CCCCCCccccEEEEeecCc
Q 005564 488 RYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCP-NGCARPYMAELGLVGDGPN 566 (691)
Q Consensus 488 ~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCp-n~Ca~~~~aDIGlvG~g~~ 566 (691)
. -+++|||.-..|. .|...++.++.+++. .+ +.+++|+|=||. |+=+.+..||||+.|.+.+
T Consensus 256 g------~~iiSCPtCGR~~---~dl~~~~~~ve~~l~------~~--~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g 318 (346)
T TIGR00612 256 G------VEIVACPSCGRTG---FDVEKVVRRVQEALF------HL--KTPLKVAVMGCVVNGPGEAKHADIGISGGGTG 318 (346)
T ss_pred C------CeEEECCCCCCcC---CCHHHHHHHHHHHHh------cC--CCCCEEEEECceecCCchhhccCeeeecCCCC
Confidence 2 3589998655555 455566666666653 22 346999999995 8999999999999996477
Q ss_pred eEEEEEcCCCCCccchhhhccCCChhHHHHHHHHH
Q 005564 567 SYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPL 601 (691)
Q Consensus 567 gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~l 601 (691)
.-.||..|.. ...++.+++.+.+...
T Consensus 319 ~~~lF~~G~~---------~~kv~~~~~~~~l~~~ 344 (346)
T TIGR00612 319 SAILFKRGKP---------KAKQPETDMADELIRL 344 (346)
T ss_pred ceEEEECCEE---------eEecCHHHHHHHHHHh
Confidence 7788888863 2368888877765543
No 43
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=97.66 E-value=9.3e-05 Score=79.41 Aligned_cols=124 Identities=19% Similarity=0.282 Sum_probs=82.8
Q ss_pred CCeEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHh
Q 005564 451 NLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEK 530 (691)
Q Consensus 451 g~~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~ 530 (691)
|..||++-. +=+.+++.--++.|+..|+.... -+++|||+ |+--.+|...++.++.+++.
T Consensus 234 GDTIRVSLt------~~p~~EV~va~~IL~al~lR~~g------~~~ISCPt---CGRt~~Dl~~~~~~ie~~l~----- 293 (359)
T PF04551_consen 234 GDTIRVSLT------GDPVEEVKVAFEILQALGLRKRG------PEIISCPT---CGRTEFDLQELVAEIEERLK----- 293 (359)
T ss_dssp -SEEEE-EC------SSCCCHHHHHHHHHHHTTSS-SS-------EEEE-------TT--SHHHHHHHHHHHHCC-----
T ss_pred CCEEEEECC------CCchHHHHHHHHHHHHhCcCcCC------ceeeeCCC---CCCccchHHHHHHHHHHHHh-----
Confidence 456887533 44566788889999999997532 35899985 66666677666666655543
Q ss_pred cCCCCCCceEEEEEcCC-CCCCCCccccEEEEeecCceEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHHHH
Q 005564 531 VGLKYNESVVIRVTGCP-NGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYW 605 (691)
Q Consensus 531 ~gl~~p~k~kI~vSGCp-n~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~~y 605 (691)
.+ +.+++|+|=||. ||=+...-||||++|.+++.-.||.+|.. +.+.+|.+++++.+..+++.|
T Consensus 294 -~l--~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~--------v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 294 -HL--KKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEV--------VKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp -CH--HCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEE--------EEEE-CSTCHHHHHHHHHHHH
T ss_pred -cC--CCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEE--------EEecCCHHHHHHHHHHHHHhh
Confidence 12 357999999995 88899999999999777888999999864 223348999988888887755
No 44
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=96.97 E-value=0.0032 Score=72.89 Aligned_cols=108 Identities=21% Similarity=0.352 Sum_probs=76.2
Q ss_pred HHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcC-CCCCCCC
Q 005564 475 ITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARP 553 (691)
Q Consensus 475 i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGC-pn~Ca~~ 553 (691)
-...|+..|+.... -..+|||| |+--+.|-+..+ .++++.... + | .+||+|=|| -||=+..
T Consensus 618 ~~~ILQ~~~~R~~k------te~isCPg---CGRT~~dlq~~~----~~I~~~~~h--l--~-GvkiavMGCIVNGPGEm 679 (733)
T PLN02925 618 SFGLLQGCRMRNTK------TEYVSCPS---CGRTLFDLQEVS----AEIREKTSH--L--P-GVSIAIMGCIVNGPGEM 679 (733)
T ss_pred HHHHHHHhCccccC------CeEEECCC---CCCccccHHHHH----HHHHHHhhc--C--C-CceEEEEeeeecCCccc
Confidence 45678888876522 24789987 877777744444 444433221 3 3 489999999 5888999
Q ss_pred ccccEEEEeecCceEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHHHHHHhccc
Q 005564 554 YMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT 611 (691)
Q Consensus 554 ~~aDIGlvG~g~~gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~ 611 (691)
--||+|+||.+++..++|+|-.. +..++|.+++.+-|..| -++++++
T Consensus 680 adAd~GyVG~gpgKI~LYvgKec--------V~~nIpeeeAvd~LIeL---IKe~G~W 726 (733)
T PLN02925 680 ADADFGYVGGAPGKIDLYVGKEV--------VKRGIAMEEATDALIQL---IKDHGRW 726 (733)
T ss_pred cccccceeccCCCeeEEEeccee--------hhcCCCHHHHHHHHHHH---HHHcCcc
Confidence 99999999999999999998743 44578998876655555 4566554
No 45
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=96.42 E-value=0.011 Score=67.14 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=74.1
Q ss_pred HHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcC-CCCCCCCc
Q 005564 476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPY 554 (691)
Q Consensus 476 ~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGC-pn~Ca~~~ 554 (691)
...|+..++.... ...+|||+ |+--++|-+..+..|.++. . .+ + .+||+|-|| -||=+.--
T Consensus 495 f~ILQaaR~R~sK------te~isCP~---CgRtlfdlq~t~~~i~~~t----~--Hl--~-g~kIaiMGCiVNGpGEma 556 (606)
T PRK00694 495 FGTLQSAGVRLVK------TEYISCPG---CGRTLFDLLEVTQRIRERT----Q--HL--P-GLKIAVMGCIVNGPGEMA 556 (606)
T ss_pred HHHHHHhcccccc------ceEEECCC---CCceeehHHHHHHHHHHHh----c--cC--C-CceEEEEEeEecCCcccc
Confidence 4567776665422 34689987 7777777554443343332 1 13 2 599999999 58888999
Q ss_pred cccEEEEeecCceEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHHHHHHhccc
Q 005564 555 MAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT 611 (691)
Q Consensus 555 ~aDIGlvG~g~~gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~~y~~~~~~ 611 (691)
-||+|+||.+++..++|+|-.. +..++|.++..+-+ ++.-++++++
T Consensus 557 dAd~GyVG~gpgkI~LY~gKec--------V~~nIPee~Avd~L---I~LIke~G~W 602 (606)
T PRK00694 557 DADFGFVGSKTGMIDLYVKHTC--------VKAHIPMENAEEEL---VQLLKEHGVW 602 (606)
T ss_pred ccccceecCCCCeEEEEeccee--------hhcCCCHHHHHHHH---HHHHHHcCCc
Confidence 9999999999999999998743 44578998766554 4445566654
No 46
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=95.83 E-value=0.017 Score=66.17 Aligned_cols=102 Identities=20% Similarity=0.323 Sum_probs=72.0
Q ss_pred HHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcC-CCCCCCCc
Q 005564 476 TTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC-PNGCARPY 554 (691)
Q Consensus 476 ~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGC-pn~Ca~~~ 554 (691)
...|+...+.... ..-+|||+ |+--++|-+.....|.++. . .| ..+||+|=|| -||=+.--
T Consensus 503 f~ILQa~r~R~sK------TEyISCPs---CGRTLfDLq~tta~Ik~~t----~--HL---kGlkI~IMGCIVNGPGEMA 564 (611)
T PRK02048 503 FGILQAGRLRTSK------TEYISCPG---CGRTLYDLQSTIARIKEAT----S--HL---KGLKIGIMGCIVNGPGEMA 564 (611)
T ss_pred HHHHHHhcccccc------ceEEECCC---CCcchhhHHHHHHHHHHHh----C--CC---CCceEEEEEeEecCCchhh
Confidence 4567766665422 23589986 8888887665544444332 1 23 2499999999 58888888
Q ss_pred cccEEEEeecCceEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHH
Q 005564 555 MAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFY 603 (691)
Q Consensus 555 ~aDIGlvG~g~~gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~ 603 (691)
-||+|.||.+++..++|+|-.. +..++|.+++.+-+..|++
T Consensus 565 DADfGYVG~gpgkI~LY~gke~--------V~~nIp~e~Avd~Li~LIk 605 (611)
T PRK02048 565 DADYGYVGAGRGKISLYKQKEC--------VEKNIPEEEAVERLIELIK 605 (611)
T ss_pred hcccceecCCCCeEEEEeccEE--------EecCCCHHHHHHHHHHHHH
Confidence 9999999999999999998743 3457999887665555544
No 47
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=94.96 E-value=0.06 Score=58.30 Aligned_cols=113 Identities=18% Similarity=0.248 Sum_probs=71.3
Q ss_pred CCCcCCHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCC
Q 005564 171 GVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEP 250 (691)
Q Consensus 171 gI~~~~l~~i~~~L~~~~G~t~~a~GD~~RNV~acp~~~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~ 250 (691)
+=+.+.++-.+.-| +++|.-... =++++|| .|.....|.++++.+|.+.+.
T Consensus 243 ~~p~~EV~va~~IL-~al~lR~~g-----~~~ISCP--tCGRt~~Dl~~~~~~ie~~l~--------------------- 293 (359)
T PF04551_consen 243 GDPVEEVKVAFEIL-QALGLRKRG-----PEIISCP--TCGRTEFDLQELVAEIEERLK--------------------- 293 (359)
T ss_dssp SSCCCHHHHHHHHH-HHTTSS-SS------EEEE------TT--SHHHHHHHHHHHHCC---------------------
T ss_pred CCchHHHHHHHHHH-HHhCcCcCC-----ceeeeCC--CCCCccchHHHHHHHHHHHHh---------------------
Confidence 44445565555545 888753322 2799998 577778899999999977642
Q ss_pred hhhhhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCC-cccccCCEEEEEEecCCCccceEEEEEcCCCCCcC
Q 005564 251 PEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS-VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTH 329 (691)
Q Consensus 251 ~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~c-~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~ 329 (691)
.|+..+||||=||.-|- ..+.-.|+|+++... ....+|.+|..
T Consensus 294 ---------------------------~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~-----g~~~lf~~g~~---- 337 (359)
T PF04551_consen 294 ---------------------------HLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGK-----GKGILFKKGEV---- 337 (359)
T ss_dssp ---------------------------CHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-T-----TCEEEECTTEE----
T ss_pred ---------------------------cCCCCceEEEEeeeecCCchhhhCceeeecCCC-----CeEEEEECCEE----
Confidence 47778999999998664 456789999994332 23678988753
Q ss_pred CcccccCccccccC-CCCHHHHHHHHHHHHHH
Q 005564 330 RLETTFPRLGEQLG-YVPKEDILYAVKAIVVT 360 (691)
Q Consensus 330 ~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~~ 360 (691)
+. .+++|++++.+..+++-
T Consensus 338 ------------v~k~~~ee~~vd~L~~~I~~ 357 (359)
T PF04551_consen 338 ------------VKKVIPEEEIVDELIELIEE 357 (359)
T ss_dssp ------------EEEE-CSTCHHHHHHHHHHH
T ss_pred ------------EEecCCHHHHHHHHHHHHHh
Confidence 22 34888988877777654
No 48
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=93.63 E-value=0.066 Score=63.53 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=41.4
Q ss_pred HHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcCC
Q 005564 145 LTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGS 190 (691)
Q Consensus 145 ~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G~ 190 (691)
-.|+++|++||+|+|++||||.+.|.||+.+++++++.+| .+.|.
T Consensus 278 ~~I~eiA~kyG~g~I~tt~r~~~elp~i~~~die~i~~~L-~~~gl 322 (731)
T cd01916 278 ADILEEAQKLGIPVIATNDKIMLGLPDVTDEDPDKIVEDL-VSGKI 322 (731)
T ss_pred ccHHHHHHHhCCCEEEechhhhcCCCCCccccHHHHHHHH-HhCCC
Confidence 3578999999999999999999999999999999999999 66664
No 49
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=93.24 E-value=0.5 Score=50.93 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=70.8
Q ss_pred cCCHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhh
Q 005564 174 KKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEV 253 (691)
Q Consensus 174 ~~~l~~i~~~L~~~~G~t~~a~GD~~RNV~acp~~~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~ 253 (691)
.+.++..++-| +++|+-..+ =++++|| .|..-..|..++++++.+.|.
T Consensus 237 ~~EV~va~~IL-~slglr~~g-----~~iiSCP--tCGR~~~dl~~~~~~ve~~l~------------------------ 284 (346)
T TIGR00612 237 THEVPVAFEIL-QSLGLRARG-----VEIVACP--SCGRTGFDVEKVVRRVQEALF------------------------ 284 (346)
T ss_pred HHHHHHHHHHH-HHcCCCcCC-----CeEEECC--CCCCcCCCHHHHHHHHHHHHh------------------------
Confidence 44555555545 777743322 3799998 466666788889998877652
Q ss_pred hhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCC-CcccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcc
Q 005564 254 VKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDN-SVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLE 332 (691)
Q Consensus 254 ~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~-c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~ 332 (691)
.++..+||+|=||.-| -..+.-.|||+.+.. . ....||..|..
T Consensus 285 ------------------------~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg----~-g~~~lF~~G~~------- 328 (346)
T TIGR00612 285 ------------------------HLKTPLKVAVMGCVVNGPGEAKHADIGISGGG----T-GSAILFKRGKP------- 328 (346)
T ss_pred ------------------------cCCCCCEEEEECceecCCchhhccCeeeecCC----C-CceEEEECCEE-------
Confidence 2444599999999755 556678999998521 1 23567777642
Q ss_pred cccCccccccCCCCHHHHHHHHHHH
Q 005564 333 TTFPRLGEQLGYVPKEDILYAVKAI 357 (691)
Q Consensus 333 ~t~p~~a~~l~~v~~eev~~~~~ai 357 (691)
+.-|+.+++++.+...
T Consensus 329 ---------~~kv~~~~~~~~l~~~ 344 (346)
T TIGR00612 329 ---------KAKQPETDMADELIRL 344 (346)
T ss_pred ---------eEecCHHHHHHHHHHh
Confidence 2357888887765543
No 50
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=92.41 E-value=3 Score=49.20 Aligned_cols=117 Identities=16% Similarity=0.191 Sum_probs=75.0
Q ss_pred cCCCcCCHHHHHHHHHHhcCCCCCCCCCCCcccccCCCCCChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCC
Q 005564 170 HGVLKKDLKTVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAE 249 (691)
Q Consensus 170 ~gI~~~~l~~i~~~L~~~~G~t~~a~GD~~RNV~acp~~~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~ 249 (691)
.|.+.+....+-..|.++++.-.. .-.+++|| .|.....|-++++.+|.++.
T Consensus 607 ~~~~~~~~~~~~~~ILQ~~~~R~~-----kte~isCP--gCGRT~~dlq~~~~~I~~~~--------------------- 658 (733)
T PLN02925 607 PDQDFDFLRNTSFGLLQGCRMRNT-----KTEYVSCP--SCGRTLFDLQEVSAEIREKT--------------------- 658 (733)
T ss_pred CCCCHHHHHHHHHHHHHHhCcccc-----CCeEEECC--CCCCccccHHHHHHHHHHHh---------------------
Confidence 343344444444444456553221 12578897 58777888888998887652
Q ss_pred ChhhhhcccCCCCCCCCCCCCCCCcCCCCCCCceEEEEecCCCCC-cccccCCEEEEEEecCCCccceEEEEEcCCCCCc
Q 005564 250 PPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS-VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRT 328 (691)
Q Consensus 250 ~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~c-~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~ 328 (691)
..||. .||||=||--|- ....=.|+|+|+... ...++|+|--
T Consensus 659 ---------------------------~hl~G-vkiavMGCIVNGPGEmadAd~GyVG~gp-----gKI~LYvgKe---- 701 (733)
T PLN02925 659 ---------------------------SHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAP-----GKIDLYVGKE---- 701 (733)
T ss_pred ---------------------------hcCCC-ceEEEEeeeecCCccccccccceeccCC-----CeeEEEecce----
Confidence 13554 599999997554 344567999997532 3479999842
Q ss_pred CCcccccCccccccC-CCCHHHHHHHHHHHHHHHHHhCC
Q 005564 329 HRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGR 366 (691)
Q Consensus 329 ~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~~~rd~G~ 366 (691)
.+. -||.|++ ++.++++-+++|+
T Consensus 702 ------------cV~~nIpeeeA---vd~LIeLIKe~G~ 725 (733)
T PLN02925 702 ------------VVKRGIAMEEA---TDALIQLIKDHGR 725 (733)
T ss_pred ------------ehhcCCCHHHH---HHHHHHHHHHcCc
Confidence 122 4788886 5666777778886
No 51
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=91.10 E-value=1.8 Score=46.64 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=68.8
Q ss_pred HHHHhcCCCCCCCCCCCcccccCCCCCChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCC
Q 005564 183 SIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSH 262 (691)
Q Consensus 183 ~L~~~~G~t~~a~GD~~RNV~acp~~~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~ 262 (691)
+|.+++|.-..+ =|+++|| .|.....|....++++.+.+.
T Consensus 247 eILqslglR~~~-----v~~iaCP--~CGR~~~dv~~~~~~~~~~~~--------------------------------- 286 (361)
T COG0821 247 EILQSLGLRSRG-----VEVIACP--TCGRTEFDVIQTLNEVEQRLE--------------------------------- 286 (361)
T ss_pred HHHHHhCccccC-----ceEEECC--CCCceeehHHHHHHHHHHHhh---------------------------------
Confidence 333666633221 3799998 577777788888887766542
Q ss_pred CCCCCCCCCCCcCCCCCCCceEEEEecCCCC-CcccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccc
Q 005564 263 GTNFPDSPEPIYGTQFLPRKFKVAVTVPTDN-SVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQ 341 (691)
Q Consensus 263 ~~~~~~~~e~~yg~~~LPrKfKi~vsg~~~~-c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~ 341 (691)
.++-.+||+|=||--| -....-.|||+.+... ..-.+|++|..-.
T Consensus 287 ---------------~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~-----~~~~~f~~g~~~~-------------- 332 (361)
T COG0821 287 ---------------HLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGK-----GSGPVFVKGEIIK-------------- 332 (361)
T ss_pred ---------------ccCCCceEEEEEeEecCCcchhccceeeecCCC-----CeeEEEECCeEEE--------------
Confidence 2344499999999754 5566789999986422 1235777775321
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHh
Q 005564 342 LGYVPKEDILYAVKAIVVTQREN 364 (691)
Q Consensus 342 l~~v~~eev~~~~~ai~~~~rd~ 364 (691)
-++.+++++=..++++-|-+.
T Consensus 333 --~~~~~~~~eel~~~i~~~~~~ 353 (361)
T COG0821 333 --KLPEEDIVEELEALIEAYAEE 353 (361)
T ss_pred --ecChhhHHHHHHHHHHHHHHH
Confidence 267778777777777655544
No 52
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=88.92 E-value=0.72 Score=33.57 Aligned_cols=34 Identities=35% Similarity=0.517 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Q 005564 651 ADKETYEAVDELAKLQNKNAHQLAIEVIRNFVAS 684 (691)
Q Consensus 651 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 684 (691)
+++++++.|+++|++.|.+..++..+||+.|+++
T Consensus 6 l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 6 LPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 3999999999999999999999999999999875
No 53
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=85.67 E-value=0.88 Score=54.46 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcC
Q 005564 146 TMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG 189 (691)
Q Consensus 146 ~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G 189 (691)
.|.++|++||.+.|.+|+|+.+.|.||+.+|+++++++| .+.+
T Consensus 316 ~L~eiA~~ygt~lItTs~k~~~eLPdit~~die~Ii~~L-~~~~ 358 (781)
T PRK00941 316 DILEEAKKLGIPVIATNDKICLGLPDRTDEDVDEIIEDL-VSGK 358 (781)
T ss_pred cHHHHHHHhCCCEEEecccccccCCCCCccCHHHHHHHH-HhCC
Confidence 478999999999999999999999999999999999999 5544
No 54
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=84.73 E-value=1.9 Score=32.79 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Q 005564 650 FADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQ 685 (691)
Q Consensus 650 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 685 (691)
.++.+++..|+.++.+-|.+..++..+|++.|+++.
T Consensus 8 ~l~~el~~~L~~ls~~t~i~~S~Ll~eAle~~l~ky 43 (44)
T PF12651_consen 8 SLDKELYEKLKELSEETGIPKSKLLREALEDYLEKY 43 (44)
T ss_pred ecCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 459999999999999999999999999999999763
No 55
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=84.52 E-value=1 Score=53.76 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=40.9
Q ss_pred HHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCCC
Q 005564 442 TLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLL 485 (691)
Q Consensus 442 ~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~ 485 (691)
.|+++|++||. .|.+|++|.+.|++|+.++.++|.+.|.+.|+.
T Consensus 279 ~I~eiA~kyG~g~I~tt~r~~~elp~i~~~die~i~~~L~~~glp 323 (731)
T cd01916 279 DILEEAQKLGIPVIATNDKIMLGLPDVTDEDPDKIVEDLVSGKIP 323 (731)
T ss_pred cHHHHHHHhCCCEEEechhhhcCCCCCccccHHHHHHHHHhCCCC
Confidence 48999999999 699999999999999999999999999998854
No 56
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=82.67 E-value=4.3 Score=46.84 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=63.4
Q ss_pred ccccCCCCCChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCC
Q 005564 201 NVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLP 280 (691)
Q Consensus 201 NV~acp~~~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LP 280 (691)
+.++|| .|...++|.++.+.+|.+.. ..||
T Consensus 509 e~isCP--~CgRtlfdlq~t~~~i~~~t------------------------------------------------~Hl~ 538 (606)
T PRK00694 509 EYISCP--GCGRTLFDLLEVTQRIRERT------------------------------------------------QHLP 538 (606)
T ss_pred eEEECC--CCCceeehHHHHHHHHHHHh------------------------------------------------ccCC
Confidence 578887 58777888888888776542 2466
Q ss_pred CceEEEEecCCCCC-cccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHH
Q 005564 281 RKFKVAVTVPTDNS-VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIV 358 (691)
Q Consensus 281 rKfKi~vsg~~~~c-~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~ 358 (691)
-.||||=||--|- ....=.|+|+|+... ...++|+|=- .+. -||.+++ ++.++
T Consensus 539 -g~kIaiMGCiVNGpGEmadAd~GyVG~gp-----gkI~LY~gKe----------------cV~~nIPee~A---vd~LI 593 (606)
T PRK00694 539 -GLKIAVMGCIVNGPGEMADADFGFVGSKT-----GMIDLYVKHT----------------CVKAHIPMENA---EEELV 593 (606)
T ss_pred -CceEEEEEeEecCCccccccccceecCCC-----CeEEEEecce----------------ehhcCCCHHHH---HHHHH
Confidence 4999999997554 344567999997432 3478999832 122 4788886 56667
Q ss_pred HHHHHhCC
Q 005564 359 VTQRENGR 366 (691)
Q Consensus 359 ~~~rd~G~ 366 (691)
++-+++|+
T Consensus 594 ~LIke~G~ 601 (606)
T PRK00694 594 QLLKEHGV 601 (606)
T ss_pred HHHHHcCC
Confidence 77778875
No 57
>PHA01623 hypothetical protein
Probab=79.27 E-value=3.3 Score=33.22 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Q 005564 650 FADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQ 685 (691)
Q Consensus 650 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 685 (691)
.|+.+++..|+.|+..+|.+..++-.+||+.|+...
T Consensus 19 rldeel~~~Ld~y~~~~g~~rSe~IreAI~~yL~~~ 54 (56)
T PHA01623 19 YMDKDLKTRLKVYCAKNNLQLTQAIEEAIKEYLQKR 54 (56)
T ss_pred EeCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 349999999999999999999999999999999763
No 58
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=78.29 E-value=7 Score=45.53 Aligned_cols=90 Identities=19% Similarity=0.228 Sum_probs=62.3
Q ss_pred cccCCCCCChhhhhhHHHHHHHHHHHhCCCccccccccccccccccCCChhhhhcccCCCCCCCCCCCCCCCcCCCCCCC
Q 005564 202 VLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPR 281 (691)
Q Consensus 202 V~acp~~~~~~~~~d~~~la~~i~~~l~p~~~ay~e~~~d~~~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~yg~~~LPr 281 (691)
-++|| .|...++|.++...+|-+.. ..||.
T Consensus 518 yISCP--sCGRTLfDLq~tta~Ik~~t------------------------------------------------~HLkG 547 (611)
T PRK02048 518 YISCP--GCGRTLYDLQSTIARIKEAT------------------------------------------------SHLKG 547 (611)
T ss_pred EEECC--CCCcchhhHHHHHHHHHHHh------------------------------------------------CCCCC
Confidence 56787 68888889888888876542 24777
Q ss_pred ceEEEEecCCCCCcc-cccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccC-CCCHHHHHHHHHHHHH
Q 005564 282 KFKVAVTVPTDNSVD-ILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVV 359 (691)
Q Consensus 282 KfKi~vsg~~~~c~~-~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~-~v~~eev~~~~~ai~~ 359 (691)
.||||=||--|-.. ..=.|.|.|+... ...++|+|-- .+. -||+|++ ++.+++
T Consensus 548 -lkI~IMGCIVNGPGEMADADfGYVG~gp-----gkI~LY~gke----------------~V~~nIp~e~A---vd~Li~ 602 (611)
T PRK02048 548 -LKIGIMGCIVNGPGEMADADYGYVGAGR-----GKISLYKQKE----------------CVEKNIPEEEA---VERLIE 602 (611)
T ss_pred -ceEEEEEeEecCCchhhhcccceecCCC-----CeEEEEeccE----------------EEecCCCHHHH---HHHHHH
Confidence 99999999765443 3457899986432 2478888742 122 4788886 556666
Q ss_pred HHHHhCC
Q 005564 360 TQRENGR 366 (691)
Q Consensus 360 ~~rd~G~ 366 (691)
+-+++|+
T Consensus 603 LIk~~g~ 609 (611)
T PRK02048 603 LIKANGD 609 (611)
T ss_pred HHHHcCC
Confidence 6678775
No 59
>PF09274 ParG: ParG; InterPro: IPR015354 This entry represents plasmid partition proteins; it adopts a ribbon-helix-helix fold, with a core of four alpha-helices. The proteins are an essential component of the DNA partition complex of the multi drug resistance plasmid TP228 []. ; PDB: 1P94_B.
Probab=76.93 E-value=2 Score=36.57 Aligned_cols=42 Identities=12% Similarity=0.163 Sum_probs=33.9
Q ss_pred cccccccCCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Q 005564 644 RYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQ 685 (691)
Q Consensus 644 ~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 685 (691)
..+..++++++.+..++.++-.+|.++.|+..+.+.+|+.+.
T Consensus 34 ~Krvtv~i~EelH~r~K~~ca~~G~sisdvv~eLid~wL~en 75 (76)
T PF09274_consen 34 TKRVTVNIDEELHRRFKAACAKQGTSISDVVRELIDKWLKEN 75 (76)
T ss_dssp EEEE-EEEEHHHHHHHHHHHHHHT--HHHHHHHHHHHHHCC-
T ss_pred eEEEEEecCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcc
Confidence 444556679999999999999999999999999999999753
No 60
>PHA00617 ribbon-helix-helix domain containing protein
Probab=69.06 E-value=7.7 Score=33.44 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=33.1
Q ss_pred ccccCCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Q 005564 647 LKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVAS 684 (691)
Q Consensus 647 ~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 684 (691)
.+| ++++.+.|+++|...|.+-.++..+||+.|+.+
T Consensus 44 VrL--p~eL~erLD~LA~~~GrsRSelIreAI~~YLee 79 (80)
T PHA00617 44 FKL--PPELNAKLEQVAIKMKKSKSEIIREALEKYLEE 79 (80)
T ss_pred EEC--CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHh
Confidence 355 999999999999999999999999999999864
No 61
>COG4226 HicB Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=68.59 E-value=15 Score=33.32 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=34.9
Q ss_pred ccccccccCCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Q 005564 643 ARYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVAS 684 (691)
Q Consensus 643 ~~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 684 (691)
++-+.|+ +++++++++-.|..+|.+|++.+.++|...+.+
T Consensus 71 Gkf~~Ri--~p~lH~~a~~aAa~qgiSLN~~v~~~L~~~v~~ 110 (111)
T COG4226 71 GKFNLRI--DPELHEAAALAAAAQGISLNTWVEEALNEAVNH 110 (111)
T ss_pred ceeeEec--CHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhc
Confidence 3445677 999999999999999999999999999988764
No 62
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=66.68 E-value=7.2 Score=46.96 Aligned_cols=43 Identities=14% Similarity=0.068 Sum_probs=40.2
Q ss_pred HHHHHHHHhCC-eEEecCCCcEEEccCCcCCHHHHHHHHHHCCC
Q 005564 442 TLREIIEKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGL 484 (691)
Q Consensus 442 ~La~iAe~yg~-~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl 484 (691)
.|+++|++||. .|.+|+++.+.|++|+.+++++|.+.|.+.|+
T Consensus 316 ~L~eiA~~ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~ 359 (781)
T PRK00941 316 DILEEAKKLGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKI 359 (781)
T ss_pred cHHHHHHHhCCCEEEecccccccCCCCCccCHHHHHHHHHhCCC
Confidence 47899999999 69999999999999999999999999999884
No 63
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=65.87 E-value=6.4 Score=30.89 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=28.1
Q ss_pred cccccccCCHHHHHHHHHHHHHhccchhhhhHHHH
Q 005564 644 RYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVI 678 (691)
Q Consensus 644 ~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 678 (691)
.-..|| ++++++.++..|..+|.+|++...++|
T Consensus 19 ~~~lRi--~~~Lh~~l~~~A~~~gvSlN~~I~~aL 51 (51)
T PF05534_consen 19 KFNLRI--PPELHRALAEAAAAEGVSLNQWIEEAL 51 (51)
T ss_pred ceeeeC--CHHHHHHHHHHHHHhCCCHHHHHHHHC
Confidence 334566 999999999999999999998877764
No 64
>PRK11675 LexA regulated protein; Provisional
Probab=52.60 E-value=19 Score=31.79 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=31.3
Q ss_pred cccCCHHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Q 005564 648 KLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVA 683 (691)
Q Consensus 648 ~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 683 (691)
.|-|+.+++..|.+||+++|.+-.++-.++|..||.
T Consensus 54 eVKldedl~ekL~eyAe~~nitRSElIr~~I~k~L~ 89 (90)
T PRK11675 54 ELKLNADLVDALNELAEARNISRSELIEEILMKQLA 89 (90)
T ss_pred EEEECHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 333499999999999999999999888888888874
No 65
>PHA01748 hypothetical protein
Probab=51.89 E-value=28 Score=28.26 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhh
Q 005564 651 ADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQQ 686 (691)
Q Consensus 651 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 686 (691)
+++++.+.|+.|++..|.+-.++..+|++.++.+..
T Consensus 9 Lp~el~~eld~~a~~~g~~RSE~Ir~Ai~~~~~~~~ 44 (60)
T PHA01748 9 IEEDLLELLDRYAIKHGLNRSEAIRKAIEKMVKDEL 44 (60)
T ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 399999999999999999988888889888886643
No 66
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=51.71 E-value=26 Score=27.40 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=30.1
Q ss_pred cccccCCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Q 005564 646 NLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVAS 684 (691)
Q Consensus 646 ~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 684 (691)
..|| ..++.+.|+..|+..|.+|+.-.-..|+.+|.+
T Consensus 8 ~lRl--P~~l~~~lk~~A~~~gRS~NsEIv~~L~~~l~~ 44 (50)
T PF03869_consen 8 NLRL--PEELKEKLKERAEENGRSMNSEIVQRLEEALKK 44 (50)
T ss_dssp EEEC--EHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred eeEC--CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHhc
Confidence 3466 999999999999999999997777777777764
No 67
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=48.34 E-value=13 Score=34.68 Aligned_cols=59 Identities=24% Similarity=0.452 Sum_probs=43.4
Q ss_pred eEEEEEcCCCCCCCCccccEEEEeecCceEEEEEcCCCCCccchhhhccCCChhHHHHHHHHHHHHH
Q 005564 539 VVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYW 605 (691)
Q Consensus 539 ~kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~~~rlg~~l~~~v~~eel~~~l~~ll~~y 605 (691)
-.+.++|||-.|+.--++.-|+..+ |++.|--- | +.+.+-..+.+|++.+++..+.+.-
T Consensus 69 rIlalDGCp~~Catk~l~~AGv~~D----~~l~itdl-G---ikK~~~~D~~~edv~kv~~~i~e~l 127 (135)
T COG4273 69 RILALDGCPLRCATKCLAEAGVQAD----VHLTITDL-G---IKKTYPSDCKDEDVEKVARTIKEAL 127 (135)
T ss_pred ceEEecCChHHHHHHHHHHhcccee----EEEEehhc-c---cccCCCCCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999887 66666332 1 2233334788999988887776543
No 68
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=39.78 E-value=52 Score=30.08 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=43.1
Q ss_pred EEecCCCccCHHHHHHHHHHHHHhC-CCeEEe-cCCCcEEEcCCCcCCHHHHHHHH
Q 005564 131 RTKNPCGKVSNQLYLTMDDLADQFG-IGTLRL-TTRQTFQLHGVLKKDLKTVMRSI 184 (691)
Q Consensus 131 Rir~pgG~lt~~ql~~la~lA~~yG-~g~i~l-TtRQ~iQl~gI~~~~l~~i~~~L 184 (691)
+++.--|.+++.-....-+||+.|. .|+|+. -+|.+.+|| ++.+=-+++-++|
T Consensus 34 ~l~~~KG~iP~~F~~~c~dIa~~~~~~G~ik~~r~~~g~rL~-fS~~ip~~v~Qri 88 (108)
T PF12321_consen 34 RLRVHKGHIPPGFLHNCRDIARRYPFRGTIKVYRQRGGVRLH-FSRSIPKKVQQRI 88 (108)
T ss_pred cEEEEcCCCChHHHHHHHHHHHhCCCcEEEEEEEeCCceEEE-EeCCCCHHHhhhh
Confidence 3455567899999999999999999 688888 559999999 6666666777777
No 69
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=36.56 E-value=55 Score=26.67 Aligned_cols=40 Identities=8% Similarity=0.105 Sum_probs=34.4
Q ss_pred cccccccCCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Q 005564 644 RYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQ 685 (691)
Q Consensus 644 ~~~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 685 (691)
....|+ +++++.-++=+....|.++.+++..+|+.+++..
T Consensus 27 dKtvrV--raDlHhiiKIetAknGgNvKEvme~~lr~~l~~~ 66 (71)
T PF07764_consen 27 DKTVRV--RADLHHIIKIETAKNGGNVKEVMEQALREKLKSV 66 (71)
T ss_dssp EEEEEE--EHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHH
T ss_pred CceEEe--ehhhhhheeeeecccCCCHHHHHHHHHHHHHHHh
Confidence 344577 9999999999999999999999999999999753
No 70
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=33.34 E-value=77 Score=26.77 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=33.7
Q ss_pred ccccCCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhh
Q 005564 647 LKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQQ 686 (691)
Q Consensus 647 ~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 686 (691)
.|| ..+|.+.|+.++..-|++-.-...|||++|+.+..
T Consensus 10 iRl--p~E~~eRL~~Ls~~tgrtkayyvrEaIE~~ieemE 47 (80)
T COG4710 10 IRL--PLELKERLDNLSKNTGRTKAYYVREAIEAYIEEME 47 (80)
T ss_pred eeC--CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 478 99999999999999999988888999999987654
No 71
>PHA01513 mnt Mnt
Probab=32.96 E-value=54 Score=28.45 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=31.9
Q ss_pred cccccCCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Q 005564 646 NLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQ 685 (691)
Q Consensus 646 ~~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 685 (691)
..|| ..++...|+..|+..|.+|+.-.-..|++.|...
T Consensus 9 ~LRL--P~eLk~rL~~aA~~nGRSmNaeIv~~Le~al~~~ 46 (82)
T PHA01513 9 NLRL--PYELKEKLKQRAKANGRSLNAELVQIVQDALSKP 46 (82)
T ss_pred eeeC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 4577 9999999999999999999987777787777554
No 72
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=30.44 E-value=2.8e+02 Score=26.66 Aligned_cols=92 Identities=16% Similarity=0.217 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCeEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhH
Q 005564 433 GRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITE 512 (691)
Q Consensus 433 Grit~~ql~~La~iAe~yg~~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~d 512 (691)
|.|+.+-+..||+.. ||+..++..+...-...-..+ .+ ...+..|.|. .|..
T Consensus 36 g~ip~~~~~~iA~~l------------------~v~~~~v~~v~tFY~~f~~~p---~g--k~~I~VC~g~-~C~~---- 87 (154)
T PRK07539 36 GWVPDEAIEAVADYL------------------GMPAIDVEEVATFYSMIFRQP---VG--RHVIQVCTST-PCWL---- 87 (154)
T ss_pred CCCCHHHHHHHHHHh------------------CcCHHHHHHHHHHHhhhCcCC---CC--CEEEEEcCCc-hHHH----
Confidence 566666666555532 455555555554443322211 12 2357799986 5653
Q ss_pred HHhhHHHHHHHHHHHHH-hcCC-CCCCceEEEEEcCCCCCCCCc
Q 005564 513 AERGIPDILKRIRAVFE-KVGL-KYNESVVIRVTGCPNGCARPY 554 (691)
Q Consensus 513 t~~~a~~l~~~l~~~l~-~~gl-~~p~k~kI~vSGCpn~Ca~~~ 554 (691)
.-+.++.+.+++.+. +.|. ..+.+|.+.-++|-..|...-
T Consensus 88 --~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~~~~ClG~C~~gP 129 (154)
T PRK07539 88 --RGGEAILAALKKKLGIKPGETTADGRFTLLEVECLGACDNAP 129 (154)
T ss_pred --CCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEccccCccCCCC
Confidence 233455666666554 3333 124568999999999997543
No 73
>PF05509 TraY: TraY domain; InterPro: IPR008876 This family consists of several enterobacterial TraY proteins. TraY is involved in bacterial conjugation where it is required for efficient nick formation in the F plasmid [].; GO: 0003677 DNA binding, 0000746 conjugation
Probab=29.83 E-value=1.1e+02 Score=23.97 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=34.5
Q ss_pred cccCCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhhc
Q 005564 648 KLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQQN 687 (691)
Q Consensus 648 ~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 687 (691)
+| +.++.+.|.+.|+.-|.+-+.=|...|..+|..|..
T Consensus 4 ~L--~~e~~~~L~~~a~rsGRSK~~Ea~~rL~dHL~~f~d 41 (49)
T PF05509_consen 4 RL--DEETNQRLEAAAERSGRSKRFEARLRLEDHLDRFPD 41 (49)
T ss_pred ec--CHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHh
Confidence 56 999999999999999999998899999999988753
No 74
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=29.05 E-value=2.8e+02 Score=24.58 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=46.9
Q ss_pred EEecCCCCCCcchhhHHHhhHHHHHHHHHHHHHhcCCCCCCceEEEEEcCCCCCCCCccccEEEEeecCceEEEEEcCCC
Q 005564 497 AMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTH 576 (691)
Q Consensus 497 v~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~gl~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~ 576 (691)
+..|.| +|..|.. +.++.+.|++.+++.++ .+.+.-|||---|.+--+-+| +.-+
T Consensus 3 I~Vc~g--T~ciAaG-----A~~V~~al~~ei~~~gl----~v~v~~tGC~G~C~~ePlV~V------------~~p~-- 57 (92)
T cd03063 3 IYVPRD--AAALALG-----ADEVAEAIEAEAAARGL----AATIVRNGSRGMYWLEPLVEV------------ETPG-- 57 (92)
T ss_pred EEEeCC--hhhhhhC-----HHHHHHHHHHHHHHcCC----eEEEEEecCceecCCCCEEEE------------EeCC--
Confidence 455655 4544432 44567777777777776 377778899766654433332 2111
Q ss_pred CCccchhhhccCCChhHHHHHHHHHHH
Q 005564 577 NQTTLARTFMNKVKVQELEKVFEPLFY 603 (691)
Q Consensus 577 ~~~rlg~~l~~~v~~eel~~~l~~ll~ 603 (691)
++.+..+|++++++++++..+.
T Consensus 58 -----g~v~Y~~V~~edv~~Iv~~~~~ 79 (92)
T cd03063 58 -----GRVAYGPVTPADVASLLDAGAL 79 (92)
T ss_pred -----CcEEEEeCCHHHHHHHHHHHhh
Confidence 0123457999999999988654
No 75
>PF07704 PSK_trans_fac: Rv0623-like transcription factor; InterPro: IPR011660 This entry represents the Rv0623 (P96913 from SWISSPROT)-like group of transcription factors associated with the PSK operon [].
Probab=28.63 E-value=1.1e+02 Score=26.29 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=33.4
Q ss_pred ccC-CHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhhc
Q 005564 649 LFA-DKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQQN 687 (691)
Q Consensus 649 L~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 687 (691)
|+| ++++.+.+.++|..-|.++++....|++..++..++
T Consensus 3 L~Ikd~ev~~LareLA~~tG~s~TeAVr~AL~~~L~~~~~ 42 (82)
T PF07704_consen 3 LNIKDPEVDRLARELARLTGESKTEAVRRALRERLERRRR 42 (82)
T ss_pred CCcCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhccc
Confidence 455 889999999999999999999999999999874443
No 76
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=28.31 E-value=76 Score=34.76 Aligned_cols=92 Identities=22% Similarity=0.310 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCCCCCccccEEEEee-------------------cCceEEEEEcCCCCCccch---hhhcc-C--CChhH
Q 005564 539 VVIRVTGCPNGCARPYMAELGLVGD-------------------GPNSYQIWLGGTHNQTTLA---RTFMN-K--VKVQE 593 (691)
Q Consensus 539 ~kI~vSGCpn~Ca~~~~aDIGlvG~-------------------g~~gy~I~lGG~~~~~rlg---~~l~~-~--v~~ee 593 (691)
+.-.|+.||.--..++.--+-++|+ ...||+++|||-..-..+| +++.. . -+..+
T Consensus 85 vvWnV~Aap~~sl~~~~WcFPi~Gcv~YrGyF~~~~A~~~a~~L~~~GlDv~v~gV~AYSTLGwF~DPlLSt~l~~~~~~ 164 (337)
T PF10023_consen 85 VVWNVFAAPEFSLEPKTWCFPIVGCVPYRGYFDEADARAEAAELRAQGLDVYVGGVPAYSTLGWFDDPLLSTMLRYPDGE 164 (337)
T ss_pred EEEEEEecCcccCCcceeeccccccccccCcCCHHHHHHHHHHHHHcCCceeEecccccccccccCCcccccccCCCchH
Confidence 7889999999999999888888885 1368999999976533333 22211 2 25566
Q ss_pred HHHHHH-HHH--HHHHHhcccCCCcHHHHHHhhCHHHHHH
Q 005564 594 LEKVFE-PLF--YYWKQKRQTKDESFGDFTNRMGFEKLQE 630 (691)
Q Consensus 594 l~~~l~-~ll--~~y~~~~~~~~Erf~~~i~R~G~e~~~~ 630 (691)
+..+|- .+. ..|.+.-..-.|+|..|+++.|...+.+
T Consensus 165 LA~LIfHELaHq~~Yv~~dt~FNEsfAtfVe~~G~~~wl~ 204 (337)
T PF10023_consen 165 LARLIFHELAHQTLYVKGDTAFNESFATFVEREGARRWLA 204 (337)
T ss_pred HHHHHHHHHhhceeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence 655443 222 2444332222799999999999888775
No 77
>COG4273 Uncharacterized conserved protein [Function unknown]
Probab=28.27 E-value=70 Score=29.99 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=39.0
Q ss_pred EEEEecCCCCCcccccCCEEEEEEecCCCccceEEEEEcCCCCCcCCcccccCccccccCCCCHHHHHHHHHHHHHHHHH
Q 005564 284 KVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRE 363 (691)
Q Consensus 284 Ki~vsg~~~~c~~~~~~DIg~v~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l~~v~~eev~~~~~ai~~~~rd 363 (691)
=++++|||.+|+.--.+--|+.+- +.+.+- -+| ..+|+|. -+.+|++..++..|.+.---
T Consensus 70 IlalDGCp~~Catk~l~~AGv~~D---------~~l~it-dlG----ikK~~~~------D~~~edv~kv~~~i~e~l~~ 129 (135)
T COG4273 70 ILALDGCPLRCATKCLAEAGVQAD---------VHLTIT-DLG----IKKTYPS------DCKDEDVEKVARTIKEALTI 129 (135)
T ss_pred eEEecCChHHHHHHHHHHhcccee---------EEEEeh-hcc----cccCCCC------CCCHHHHHHHHHHHHHHhhh
Confidence 379999999999776555555531 122221 011 1233333 37999999999998876544
Q ss_pred hCCC
Q 005564 364 NGRR 367 (691)
Q Consensus 364 ~G~R 367 (691)
-++|
T Consensus 130 ~~~~ 133 (135)
T COG4273 130 KLNR 133 (135)
T ss_pred cccc
Confidence 4443
No 78
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=27.31 E-value=1.8e+02 Score=31.59 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=43.6
Q ss_pred eEEEEEecCCCccCHHHHHHHHHHHHHhCCCeEEecCCCcEEEcCCCcCCHHHHHHHHHHhcCCCCCCCCC
Q 005564 127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGD 197 (691)
Q Consensus 127 ~fmlRir~pgG~lt~~ql~~la~lA~~yG~g~i~lTtRQ~iQl~gI~~~~l~~i~~~L~~~~G~t~~a~GD 197 (691)
-..+++|+ |.-+.+.+..++++++++|...|.|..|-.-|-.....-+. +.+.++.+.+...+-+.||
T Consensus 135 pVsvKiR~--g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~-~~i~~ik~~~~iPVi~nGd 202 (312)
T PRK10550 135 PVTVKVRL--GWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINW-QAIGEIRQRLTIPVIANGE 202 (312)
T ss_pred ceEEEEEC--CCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccH-HHHHHHHhhcCCcEEEeCC
Confidence 35666665 65555668899999999999999998887666332222244 5566664444444444443
No 79
>PF08859 DGC: DGC domain; InterPro: IPR014958 This protein appears to be a zinc binding domain from the conservation of four potential chelating cysteines. The protein is named after a conserved central motif, the function is unknown.
Probab=26.99 E-value=27 Score=31.86 Aligned_cols=55 Identities=29% Similarity=0.480 Sum_probs=38.2
Q ss_pred eEEEEEcCCCCCCCCccccEEEEeecCceEEEEEcCCCC-CccchhhhccCCChhHHHHHHHHHH
Q 005564 539 VVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHN-QTTLARTFMNKVKVQELEKVFEPLF 602 (691)
Q Consensus 539 ~kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~-~~rlg~~l~~~v~~eel~~~l~~ll 602 (691)
--|.|+|||-.|++-....-|+... ..|.+- ..| ..+. ...++.+++.++++.+-
T Consensus 53 ~iIaIDGC~~~Ca~k~le~~g~~~~----~~i~~t-dlgi~k~~----~~~~~~~~i~~~~~~v~ 108 (110)
T PF08859_consen 53 PIIAIDGCPLCCAKKILEEAGVKPD----EHIVLT-DLGIKKRK----GDDVSEEEIEEVVEAVK 108 (110)
T ss_pred ceEEECCCHHHHHHHHHHHcCCCCc----eEEEEe-ecccccCC----CCCCCHHHHHHHHHHHH
Confidence 5799999999999999998888764 344443 333 1111 13678888888876653
No 80
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=25.79 E-value=99 Score=25.58 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=35.2
Q ss_pred eCCCCCCHHHHHHHHHHHHHhCC---eEEecCCCcEEEccCCcCCHHHHHHHHHH
Q 005564 430 VDNGRIAGKMKKTLREIIEKYNL---NVRITPNQNIILCDIRKAWKRPITTALAQ 481 (691)
Q Consensus 430 vp~Grit~~ql~~La~iAe~yg~---~irlT~~QnI~L~gI~~e~l~~i~~~L~~ 481 (691)
+|.|-+.+=+-.-...|-+.|-. .||..+..+|.+.|...++...|.+.|++
T Consensus 1 lp~ga~~AL~~EL~kRl~~~yPd~~v~Vr~~s~~~l~v~g~~~~~k~~i~~iLqe 55 (65)
T PF06183_consen 1 LPAGALEALESELTKRLHRQYPDAEVRVRPGSANGLSVSGGKKDDKERIEEILQE 55 (65)
T ss_dssp --TTHHHHHHHHHHHHHHHH-SS-EEEEEEESS-EEEEES--HHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHCCCceEeeeecccCccccCCcCchHHHHHHHHHHH
Confidence 35566665555556778888875 48889999999999998878888888876
No 81
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=25.76 E-value=1e+02 Score=26.99 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=31.9
Q ss_pred cccccceEeccCC--cEEEEEEeCCCCCCHHHHHHHHHHHHHhCCe
Q 005564 410 FKSHLGWHEQGDG--GLFCGLHVDNGRIAGKMKKTLREIIEKYNLN 453 (691)
Q Consensus 410 ~~d~~G~~~q~dG--~~~v~v~vp~Grit~~ql~~La~iAe~yg~~ 453 (691)
.+|.+.|.++++. ..++-++-|+|+++.+|...+..+.+. |..
T Consensus 48 ~PDl~~~~~~~~~~~~~~iEvK~p~~~ls~~Q~~~~~~l~~~-G~~ 92 (100)
T PF08774_consen 48 FPDLILWRPRGKRDIFLFIEVKGPGDRLSPNQKEWIDKLREA-GFR 92 (100)
T ss_pred CCcEEEEecCCCccEEEEEEEcCCCCCcCHHHHHHHHHHHHC-CCE
Confidence 4566666655542 568899999999999999999777654 543
No 82
>PHA02938 hypothetical protein; Provisional
Probab=23.41 E-value=4.1e+02 Score=28.48 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=35.0
Q ss_pred ccccCCHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Q 005564 647 LKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFVASQ 685 (691)
Q Consensus 647 ~~L~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 685 (691)
..|.+.+-|..+|..+|+.-+.++..+-.-||.+||.-.
T Consensus 213 ~tlklP~ymllqL~kIAek~~vp~s~lIRlAIv~YLklv 251 (361)
T PHA02938 213 RALKLPAYMLLQLTKIAEQTSVPRSALIRLAIMKYLNLL 251 (361)
T ss_pred eEEeccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhh
Confidence 467779999999999999999999999999999999643
No 83
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.05 E-value=1.1e+02 Score=27.76 Aligned_cols=35 Identities=34% Similarity=0.718 Sum_probs=22.4
Q ss_pred HHHhcCCCCCCceEEEEEcCCCCCCCCc-----cccEEEEee
Q 005564 527 VFEKVGLKYNESVVIRVTGCPNGCARPY-----MAELGLVGD 563 (691)
Q Consensus 527 ~l~~~gl~~p~k~kI~vSGCpn~Ca~~~-----~aDIGlvG~ 563 (691)
.|.+.+|.. -.+-++.++|| .|+.+. .++.+|+|.
T Consensus 34 ~Ln~~~Ldy-V~ie~G~t~CP-~Cg~~~e~~fvva~~aLVgl 73 (115)
T COG1885 34 RLNKPDLDY-VEIEVGSTSCP-KCGEPFESAFVVANTALVGL 73 (115)
T ss_pred HhccCCCCe-EEEecccccCC-CCCCccceeEEEecceeEEE
Confidence 344445543 34778899999 688775 455666663
No 84
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=22.79 E-value=3.5e+02 Score=27.67 Aligned_cols=57 Identities=14% Similarity=0.014 Sum_probs=40.4
Q ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHHhCCeEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCC
Q 005564 423 GLFCGLHVDNGRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLL 486 (691)
Q Consensus 423 ~~~v~v~vp~Grit~~ql~~La~iAe~yg~~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~ 486 (691)
..++....-+|.=.-+.++++++.|.++|..+.-|. ||+.++.++|.+...++|...
T Consensus 149 ~~SiKffPm~Gl~~leE~~avAkA~a~~g~~lEPTG-------GIdl~N~~~I~~i~l~aGv~~ 205 (218)
T PF07071_consen 149 GSSIKFFPMGGLKHLEELKAVAKACARNGFTLEPTG-------GIDLDNFEEIVKICLDAGVEK 205 (218)
T ss_dssp --EEEE---TTTTTHHHHHHHHHHHHHCT-EEEEBS-------S--TTTHHHHHHHHHHTT-S-
T ss_pred CCeeeEeecCCcccHHHHHHHHHHHHHcCceeCCcC-------CcCHHHHHHHHHHHHHcCCCe
Confidence 345666666777788999999999999998777774 577889999999999999764
No 85
>PF13089 PP_kinase_N: Polyphosphate kinase N-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=22.69 E-value=13 Score=33.94 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=27.3
Q ss_pred HHHHhhceeeeeccCcccCCccceEEEEE-------------ecCCCccCHHHHHHHHHHHHH
Q 005564 104 TQLIKFHGSYQQYNRDERGAKSYSFMLRT-------------KNPCGKVSNQLYLTMDDLADQ 153 (691)
Q Consensus 104 ~~~lk~~G~y~q~~rd~r~~~~~~fmlRi-------------r~pgG~lt~~ql~~la~lA~~ 153 (691)
.+++||.+||...- +..||||| +-|.|.-+.+|+..|.+.+.+
T Consensus 28 lERl~Fl~I~ssNl-------DEFFmVRVA~Lk~~~~~g~~~~~~~g~tP~eqL~~I~~~v~~ 83 (109)
T PF13089_consen 28 LERLKFLAIFSSNL-------DEFFMVRVAGLKRQIEAGVKKRDPDGLTPQEQLDAIRKRVHE 83 (109)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHCCCHHHHHHCCHHHCC---S---HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhcch-------hHHHHHHHHHHHHHHHhccCCCCcCCCCHHHHHHHHHHHHHH
Confidence 67899999997642 23788887 235666666788888777655
No 86
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=22.68 E-value=4.9e+02 Score=24.77 Aligned_cols=91 Identities=16% Similarity=0.321 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCeEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhH
Q 005564 433 GRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITE 512 (691)
Q Consensus 433 Grit~~ql~~La~iAe~yg~~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~d 512 (691)
|.|+.+.+..+|+.. ||+..++..+...-...-..+ .+ ...+..|.|. .|...
T Consensus 30 G~i~~~~~~~iA~~l------------------~~~~~~v~~v~tFY~~f~~~p---~g--k~~I~VC~g~-~C~~~--- 82 (148)
T TIGR01958 30 GWVTPEAIAAVAEML------------------GIPPVWVYEVATFYSMFDTEP---VG--RYHLQVCTNV-PCALR--- 82 (148)
T ss_pred CCCCHHHHHHHHHHh------------------CcCHHHHHHHHhHHhhcCcCC---CC--CEEEEEcCCc-hhhhc---
Confidence 566777666555532 456666655554443322211 22 2358899996 46532
Q ss_pred HHhhHHHHHHHHHHHHHhc-C-CCCCCceEEEEEcCCCCCCCC
Q 005564 513 AERGIPDILKRIRAVFEKV-G-LKYNESVVIRVTGCPNGCARP 553 (691)
Q Consensus 513 t~~~a~~l~~~l~~~l~~~-g-l~~p~k~kI~vSGCpn~Ca~~ 553 (691)
-+.++.+++++.+.-. + ...+.+|.+.-++|-..|...
T Consensus 83 ---Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~~~~ClG~C~~a 122 (148)
T TIGR01958 83 ---GSEALLKYLENKLGIKPGETTPDGRFTLVEVECLGACGNA 122 (148)
T ss_pred ---CHHHHHHHHHHHhCCCCCCCCCCCeEEEEEcCccCccCCC
Confidence 2334555665544311 1 122456999999999999654
No 87
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.05 E-value=4.1e+02 Score=31.20 Aligned_cols=107 Identities=19% Similarity=0.356 Sum_probs=61.7
Q ss_pred cCCCCHHHHHHHHHHHH-HHHHHhCCCC-cchhhhHHHHHHhhchhHHHHHHHHHh-CCC-------CCCCCCC-Ccccc
Q 005564 342 LGYVPKEDILYAVKAIV-VTQRENGRRD-DRKYSRMKYLISSWGIEKFRSVVEQYY-GKK-------FEPFRQL-PEWEF 410 (691)
Q Consensus 342 l~~v~~eev~~~~~ai~-~~~rd~G~R~-~R~~aRlk~li~~~G~e~f~e~l~~~~-g~~-------l~~~~~~-~~~~~ 410 (691)
..|++.+||.++++.++ .+|++..+-+ ..+-.|| .|.+.+++|. +++ +.....+ ....+
T Consensus 239 mSF~~~edv~~~~E~l~~~vf~~~~~i~l~~pFprm----------tY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F 308 (585)
T COG0173 239 MSFVDEEDVMELIEKLLRYVFKEVKGIELKTPFPRM----------TYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEF 308 (585)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHhcCCccCCCcccc----------cHHHHHHHhCCCCCcccCCceehhHHHHhcCCCc
Confidence 35899999999999998 4688765321 1123333 3456666543 121 1110000 00111
Q ss_pred ccccceEeccCCcEEEEEEeCCC-CCCHHHHHHHHHHHHHhCC----eEEecCCC
Q 005564 411 KSHLGWHEQGDGGLFCGLHVDNG-RIAGKMKKTLREIIEKYNL----NVRITPNQ 460 (691)
Q Consensus 411 ~d~~G~~~q~dG~~~v~v~vp~G-rit~~ql~~La~iAe~yg~----~irlT~~Q 460 (691)
.-+-+. -.+|.-.-.+.+|+| .++-.++..+.++|+.||. .|+++...
T Consensus 309 ~vF~~~--~~~~~~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~~~ 361 (585)
T COG0173 309 KVFSNA--LANGGRVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEEDG 361 (585)
T ss_pred ceehhh--hhcCCeEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEecCC
Confidence 111111 223333447889985 5677899999999999985 48888775
No 88
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=21.69 E-value=5.5e+02 Score=24.90 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCeEEecCCCcEEEccCCcCCHHHHHHHHHHCCCCCCCCCCCCcceEEecCCCCCCcchhhH
Q 005564 433 GRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITE 512 (691)
Q Consensus 433 Grit~~ql~~La~iAe~yg~~irlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~aC~G~~~C~~a~~d 512 (691)
|.|+.+.+..||+.. +|+..++..+...-...-.. ..+ ...+..|.|. .|...
T Consensus 37 G~Ip~e~~~~iA~~l------------------~v~~~~V~~vatFY~~f~~~---p~G--k~~I~VC~~~-~C~~~--- 89 (156)
T PRK05988 37 GYVPEDAVPVIAEAL------------------NLSRAEVHGVITFYHDFRTH---PPG--RHVLKLCRAE-ACQAM--- 89 (156)
T ss_pred CCCCHHHHHHHHHHh------------------CCCHHHHHHHHHHhhccCCC---CCC--CEEEEEeCCc-hhhcC---
Confidence 667777766666542 45666555555433222111 112 2346799986 57542
Q ss_pred HHhhHHHHHHHHHHHHH-hcC-CCCCCceEEEEEcCCCCCCCCccccEEEEeecCceEEEEEcCCCCCccchhhhccCCC
Q 005564 513 AERGIPDILKRIRAVFE-KVG-LKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVK 590 (691)
Q Consensus 513 t~~~a~~l~~~l~~~l~-~~g-l~~p~k~kI~vSGCpn~Ca~~~~aDIGlvG~g~~gy~I~lGG~~~~~rlg~~l~~~v~ 590 (691)
-+.+|.+.+++.+. +.| ...+.+|++.-+.|--.|..+- .+.|.+. +...++
T Consensus 90 ---G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C~~aP--------------~~~in~~---------~~~~lt 143 (156)
T PRK05988 90 ---GGDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLCACSP--------------AAMLDGE---------VHGRLD 143 (156)
T ss_pred ---CHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCccCCCC--------------eEEECCE---------EeCCCC
Confidence 23445666655442 111 1235679999999999996652 2333332 223677
Q ss_pred hhHHHHHHHHH
Q 005564 591 VQELEKVFEPL 601 (691)
Q Consensus 591 ~eel~~~l~~l 601 (691)
++++.++++.+
T Consensus 144 ~~~~~~il~~~ 154 (156)
T PRK05988 144 PQRLDALLAEA 154 (156)
T ss_pred HHHHHHHHHHh
Confidence 88887777654
No 89
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=21.38 E-value=1.4e+02 Score=24.78 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=34.5
Q ss_pred cCCCccCHHHHHHHHHHHHHhCCCeEEe--cCCCcEEEcCCCcCCHHHHHHHHHHh
Q 005564 134 NPCGKVSNQLYLTMDDLADQFGIGTLRL--TTRQTFQLHGVLKKDLKTVMRSIIRS 187 (691)
Q Consensus 134 ~pgG~lt~~ql~~la~lA~~yG~g~i~l--TtRQ~iQl~gI~~~~l~~i~~~L~~~ 187 (691)
+|.|.+++=+-.-.-+|.+.|-+-.++| .+..++.+.|..+++ ++.+.++.++
T Consensus 1 lp~ga~~AL~~EL~kRl~~~yPd~~v~Vr~~s~~~l~v~g~~~~~-k~~i~~iLqe 55 (65)
T PF06183_consen 1 LPAGALEALESELTKRLHRQYPDAEVRVRPGSANGLSVSGGKKDD-KERIEEILQE 55 (65)
T ss_dssp --TTHHHHHHHHHHHHHHHH-SS-EEEEEEESS-EEEEES--HHH-HHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHCCCceEeeeecccCccccCCcCchH-HHHHHHHHHH
Confidence 4777777777777788999999876555 788889999998776 6666665454
No 90
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=20.09 E-value=1.4e+02 Score=26.20 Aligned_cols=27 Identities=19% Similarity=0.291 Sum_probs=25.0
Q ss_pred eEEEEEecCCCccCHHHHHHHHHHHHH
Q 005564 127 SFMLRTKNPCGKVSNQLYLTMDDLADQ 153 (691)
Q Consensus 127 ~fmlRir~pgG~lt~~ql~~la~lA~~ 153 (691)
.+++-++-|+|++|.+|...+..|.+.
T Consensus 63 ~~~iEvK~p~~~ls~~Q~~~~~~l~~~ 89 (100)
T PF08774_consen 63 FLFIEVKGPGDRLSPNQKEWIDKLREA 89 (100)
T ss_pred EEEEEEcCCCCCcCHHHHHHHHHHHHC
Confidence 689999999999999999999888776
Done!