Query 005564
Match_columns 691
No_of_seqs 386 out of 2450
Neff 6.6
Searched_HMMs 29240
Date Wed Mar 27 00:51:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m3/005564.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H3_4-4//hhsearch_pdb/005564hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g38_A SIR-HP, sirhp, sulfite 1.0 1 1 972.9 37.1 533 68-626 12-558 (570)
2 1zj8_A Probable ferredoxin-dep 1.0 1 1 849.1 42.5 506 68-629 31-566 (566)
3 1aop_A Sirhp, sulfite reductas 1.0 1 1 844.0 37.8 482 123-630 2-489 (497)
4 3b0g_A NII3, nitrite reductase 1.0 1 1 807.4 29.9 483 68-609 70-583 (591)
5 2akj_A Ferredoxin--nitrite red 1.0 1 1 806.3 33.6 483 68-609 87-601 (608)
6 3or1_B Sulfite reductase beta; 1.0 1 1 321.9 18.1 215 126-392 61-354 (386)
7 3mm5_A Sulfite reductase, diss 1.0 1 1 318.1 16.6 218 123-392 91-379 (418)
8 3mm5_B Sulfite reductase, diss 1.0 1 1 312.0 17.2 230 108-393 36-338 (366)
9 2akj_A Ferredoxin--nitrite red 1.0 1 1 309.6 17.5 256 411-668 136-439 (608)
10 3b0g_A NII3, nitrite reductase 1.0 1 1 308.7 20.3 269 411-683 119-448 (591)
No 1
>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=1.00 E-value=1 Score=972.94 Aligned_cols=533 Identities=37% Similarity=0.654 Sum_probs=496.8
Q ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHC-CCCCCHHHHHHHHHCEEEEECCCCCCCC-------CCCEEEEEEECCCCCC
Q ss_conf 7899934544210499751068865300-9999976778776240254125764587-------6400899985299755
Q 005564 68 ETKRSKVEIIKEQSNFIRYPLNEELLTD-APNVNESATQLIKFHGSYQQYNRDERGA-------KSYSFMLRTKNPCGKV 139 (691)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~~~~~~~~~~~-~~~~~~~~~~~lk~~G~y~q~~r~~r~~-------~~~~fmlRir~pgG~l 139 (691)
..|+|++|+||++||||++++.++|.+. ...+++++++++||||+|+|+|||.|.+ +.|+||+|+|+|+|.+
T Consensus 12 ~~~l~~~E~~K~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~k~~G~y~Q~~r~~~~~~~~~~~~~~~~fm~Rvr~pgG~l 91 (570)
T 4g38_A 12 EGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVI 91 (570)
T ss_dssp ---------------------------------------------------------------------CCCEECGGGEE
T ss_pred CCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEEECCCCCCHHHHCCCCCCCCCEEEEEECCCCCC
T ss_conf 79988688775006523568999987752089998998877651013753644200121023575763799983578622
Q ss_pred CHHHHHHHHHHHHHH-CCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 799999999999981-99929915798679827896899999999999609-9877778988640048998872444569
Q 005564 140 SNQLYLTMDDLADQF-GIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFA 217 (691)
Q Consensus 140 t~~ql~~la~iA~~y-G~g~i~lTtRQ~iQLhgi~~~~l~~v~~~L~~~~G-~t~ga~Gd~~RNI~acp~~~~~~~~~d~ 217 (691)
|++||+.|++||++| |+|++|+|||||||||||.++++++++++| .++| +++++|||++|||++||+|++...+.++
T Consensus 92 t~~Ql~~la~iA~~y~g~G~i~lTtRqniQl~gi~~~~~~~i~~~L-~~~gl~~~~a~Gd~vRNV~~~p~p~~g~~~~d~ 170 (570)
T 4g38_A 92 TTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQML-HSVGLDALATAWDMNRNVLCTSNPYESQLHAEA 170 (570)
T ss_dssp EHHHHHHHHHHHHHHBSSCCEEECTTSCEECCSBC-----CHHHHH-HTTTCEECCTTTCCBCCCEECSSCSSGGGHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHH
T ss_conf 9999999999999808997699947851799447888899999999-976998765667886656836874457437889
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf 99999999871897665321113432223689902341036899999999999987678889983289996699998446
Q 005564 218 QKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDI 297 (691)
Q Consensus 218 ~~~a~~i~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isgc~~~c~~~ 297 (691)
.+++.+|+++|.|.+.+|+++|++++++.+.+ .||+||..+|||||||+||||++||+++
T Consensus 171 ~~~a~~i~~~l~~~~~~~~e~~l~~~~~~~~~--------------------~~p~~g~~~LPrKFKiavsg~~~~~~~~ 230 (570)
T 4g38_A 171 YEWAKKISEHLLPRTRAYAEIWLDQEKVATTD--------------------EEPILGQTYLPRKFKTTVVIPPQNDIDL 230 (570)
T ss_dssp HHHHHHHHHHTCC---------------------------------------------------CBCEEEECTTBCTTCG
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHCCCC--------------------CCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 99999999864135336788872220002554--------------------5732245579986699997788666567
Q ss_pred CCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 33878999995479961059999827888767766656744433578997789999999999999938998410245999
Q 005564 298 LTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKY 377 (691)
Q Consensus 298 ~~~Diglv~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~lg~v~~eev~~~~~aii~~~rd~G~R~~R~~aRlk~ 377 (691)
++|||||+++.++ ++..||+|||||++|++|++.+|+|++|+.++||++|++++++++|+.+|++||+|.+|+++||||
T Consensus 231 ~~~Dig~~a~~~~-~~~~Gf~v~vGGg~g~~~~~~~t~p~~a~~l~~v~~e~v~~~~~ai~~~~~~~G~r~~r~kaRlk~ 309 (570)
T 4g38_A 231 HANDMNFVAIAEN-GKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKY 309 (570)
T ss_dssp GGSSEEEEEEESS-SSEEEEEEEECCBCCCCTTCTTCCCBCCEEEEEEEGGGHHHHHHHHHHHHHHHCC-----CCSHHH
T ss_pred CCCCEEEEEEEEC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 3675899999937-953468999735555556766677752453376689999999999999999856644334667999
Q ss_pred HHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCH----HHHHHHHHHHHHHCCE
Q ss_conf 999513147999999983987888888984434566664860699189999818998779----9999999999992993
Q 005564 378 LISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLN 453 (691)
Q Consensus 378 li~~~G~e~f~e~v~~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~i~ip~Grit~----~ql~~LaeiAe~yg~~ 453 (691)
+|++||+++|++++++++|.++++..+.......||+||++|+||+|+|++++|+|++++ ++++.||+||++|+..
T Consensus 310 li~~~G~e~f~~~v~~~~g~~~~~~~~~~~~~~~d~~g~~~~~dG~~~v~v~~~~Grl~~~~~~~~l~~La~iAe~~gg~ 389 (570)
T 4g38_A 310 TLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGD 389 (570)
T ss_dssp HHHHHCHHHHHHHHHHHHTCCCBCCCCCCCCBCCCCCEEEECSTTEEEEEECCGGGEECEETTEEHHHHHHHHHHHCSSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCEECCCCCHHHHHHHHHHHHHHCCE
T ss_conf 98741389999999998642468887667677766657203689728999983377655886489999999999984996
Q ss_pred EEECCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99667984898368957989999999988998888889886528845999999303667873199999999998886077
Q 005564 454 VRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGL 533 (691)
Q Consensus 454 IrlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~AC~G~~~C~~ai~dt~~~a~~l~~~l~~~~~~~~l 533 (691)
||+|++|||+|.||++++++.+++.|.++|+. .+.++.+++++||||+++|++|++||+++++.|.+++++.+...++
T Consensus 390 iRlT~~Qniil~gv~~e~l~~i~~~L~~~Gl~--~~~~~~~~~v~aC~G~~~C~~a~~dt~~~a~~L~~~le~~~~~~~l 467 (570)
T 4g38_A 390 FRITANQNLIIAGVPESEKAKIEKIAKESGLM--NAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGV 467 (570)
T ss_dssp EEECTTSCEEEEEEEGGGHHHHHHHHHHTTTT--CCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHHTTC
T ss_pred EEECCCCCEEEECCCHHHHHHHHHHHHHCCCC--CCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999985899139989999999999976998--7888761373879887765454676999999999999988753477
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 77874289997599999887445179993408439999837789852111420589966799999999999999511489
Q 005564 534 KYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKD 613 (691)
Q Consensus 534 ~~p~k~kI~iSGCpn~Ca~~~~aDIGlvG~g~~gy~I~iGG~~~~~rlg~~l~~~V~~eei~~~ie~ll~~y~~~~~~~~ 613 (691)
. |.+|+|+||||||+|++++++||||+|.+.++|+||+||+.+++++|+++...|+.+++++++++++++|.+++++ +
T Consensus 468 ~-p~~iki~vSGCpn~C~~~~~aDIGlvG~~~g~y~l~lGG~~~~~r~g~~~~~~v~~~ei~~~l~~ll~~y~~~r~~-~ 545 (570)
T 4g38_A 468 S-DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREA-G 545 (570)
T ss_dssp T-TCCCCEEEESSTTCTTCGGGSSEEEEEEETTEEEEEECCCTTSCSCCEEEEEEEEHHHHHHHHHHHHHHHHHHCCT-T
T ss_pred C-CCCEEEEEECCCCHHHHCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCC-C
T ss_conf 7-7761899957875121035364579975156169997996777520014323779899999999999999982777-9
Q ss_pred CCHHHHHHHHCHH
Q ss_conf 8377899852979
Q 005564 614 ESFGDFTNRMGFE 626 (691)
Q Consensus 614 Erf~~~i~R~G~e 626 (691)
|||++|++|+|+.
T Consensus 546 E~f~~~~~R~G~~ 558 (570)
T 4g38_A 546 EGFGDFTVRAGII 558 (570)
T ss_dssp CCHHHHHHHTTSS
T ss_pred CCHHHHHHHCCCC
T ss_conf 9599999865974
No 2
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Probab=1.00 E-value=1 Score=849.11 Aligned_cols=506 Identities=24% Similarity=0.437 Sum_probs=450.5
Q ss_pred CCCCCHHHHHHHHCCCC--CCCHHHHHHHC-CCCCCHHHHH-HHHHCEEEEECCCCCCCC----------CCCEEEEEEE
Q ss_conf 78999345442104997--51068865300-9999976778-776240254125764587----------6400899985
Q 005564 68 ETKRSKVEIIKEQSNFI--RYPLNEELLTD-APNVNESATQ-LIKFHGSYQQYNRDERGA----------KSYSFMLRTK 133 (691)
Q Consensus 68 ~~k~~~~E~~K~~~~~l--~~~~~~~~~~~-~~~~~~~~~~-~lk~~G~y~q~~r~~r~~----------~~~~fmlRir 133 (691)
..|+|++|+||.+|+|| +..+.+.+++. .+++++++++ ++||||+|+|++|+.|++ .+++||+|+|
T Consensus 31 ~~~~~~~E~~K~~~~~l~~~~~i~~~~~~~~~~~i~~~d~~~~~k~~G~y~q~~~~~~~~~~~~~~~~~~~~~~~mvRvr 110 (566)
T 1zj8_A 31 REPLNANEELKKAGNPLDVRERIENIYAKQGFDSIDKTDLRGRFRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVR 110 (566)
T ss_dssp CSCCSHHHHHGGGSCGGGHHHHHHHTHHHHCGGGSCHHHHHTGGGGGTEEEEECTTCCGGGCSGGGHHHHEEEEEEEEEB
T ss_pred CCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEC
T ss_conf 89998688875115567789999999863687789978975335378850525776543223333433346743899964
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCC-CCH
Q ss_conf 29975579999999999998199929915798679827896899999999999609-9877778988640048998-872
Q 005564 134 NPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVR 211 (691)
Q Consensus 134 ~pgG~lt~~ql~~la~iA~~yG~g~i~lTtRQ~iQLhgi~~~~l~~v~~~L~~~~G-~t~ga~Gd~~RNI~acp~~-~~~ 211 (691)
+|+|.+|++||+.|++||++||+|++|+|||||||||||.++++++++++| .++| .++++|||++|||++||++ .|.
T Consensus 111 ~p~G~lt~~qlr~la~ia~~yg~g~i~~TtRqniql~gi~~~~l~~i~~~L-~~~gl~~~~~~G~~~Rnv~~~p~~~~~~ 189 (566)
T 1zj8_A 111 CDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEIWRRL-DDVGLQTTEACGDCPRVVLGSPLAGESL 189 (566)
T ss_dssp CGGGEECHHHHHHHHHHHHHHSTTEEEECTTSCEEEEEECGGGHHHHHHHH-HTTTCBCTTSSSSSEEEEEECTTTTTCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 788708999999999999997899299977751799268889999999999-9759987777577878700174655483
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 44456999999999871897665321113432223689902341036899999999999987678889983289996699
Q 005564 212 KDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPT 291 (691)
Q Consensus 212 ~~~~d~~~~a~~i~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isgc~ 291 (691)
.++.|+.+++.+|.+.|.. +++ | .+|||||||+||||+
T Consensus 190 ~~~~D~~~~~~~l~~~~~~--------------------------------------~~~--~--~~LP~KfKiavsgc~ 227 (566)
T 1zj8_A 190 DEVLDPTWAIEEIVRRYIG--------------------------------------KPD--F--ADLPRKYKTAISGLQ 227 (566)
T ss_dssp TCSCCTHHHHHHHHHHHTT--------------------------------------SGG--G--SSCSSCEEEEEESSS
T ss_pred CCCCCCHHHHHHHHHHHCC--------------------------------------CCC--C--CCCCCCEEEEEECCC
T ss_conf 0015829999999998737--------------------------------------942--1--368850489984467
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9984463387899999547996105999982788876776665674443357-899778999999999999993899841
Q 005564 292 DNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDR 370 (691)
Q Consensus 292 ~~c~~~~~~Diglv~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~lg-~v~~eev~~~~~aii~~~rd~G~R~~R 370 (691)
+.| +.++||||++++++++ ..||+|+|||++|. .|++|+.++ ||+++++++++++|+++|+++|+|+||
T Consensus 228 ~~~--~~~~Dig~i~~~~~~~-~~G~~v~vGG~~g~-------~p~~a~~l~~~v~~e~v~~~~~ai~~~~~~~G~R~~r 297 (566)
T 1zj8_A 228 DVA--HEINDVAFIGVNHPEH-GPGLDLWVGGGLST-------NPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRRLR 297 (566)
T ss_dssp CSC--GGGSSEEEEEEEETTT-EEEEEEEECCBCSS-------SCBCCEEEEEEECGGGHHHHHHHHHHHHHHHSCCSSG
T ss_pred CCC--CCCCCEEEEEEEECCC-CCEEEEEECCCCCC-------CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 744--3237489998994588-75089998154799-------9841315405889999999999999999984841134
Q ss_pred HHHHHHHHHHHHCHHHHHHHHH-HHHCCCCCCC-CCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 0245999999513147999999-9839878888-8898443456666486069918999981899877999999999999
Q 005564 371 KYSRMKYLISSWGIEKFRSVVE-QYYGKKFEPF-RQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIE 448 (691)
Q Consensus 371 ~~aRlk~li~~~G~e~f~e~v~-~~~g~~l~~~-~~~~~~~~~d~~G~~~q~dG~~~v~i~ip~Grit~~ql~~LaeiAe 448 (691)
+++|++|+|++||+++|+++++ ++++.++.+. .+.+.+...+|.||++|+||.|++++++|+|++++++++.||++|+
T Consensus 298 ~~aRl~~li~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~qk~G~~~v~v~~p~G~lt~~~l~~Ladiae 377 (566)
T 1zj8_A 298 AKARLKFLIKDWGIAKFREVLETEYLKRPLIDGPAPEPVKHPIDHVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMA 377 (566)
T ss_dssp GGCSHHHHHHHHCHHHHHHHHHHHTTSSCCEECCCCCCCSSCCCCCEEEECTTSSEEEEEBCBTTEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 13779999999788999999999855665566777667656677766321557858999967787069999999999999
Q ss_pred HHCC-EEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9299-399667984898368957989999999988998888889886528845999999303667873199999999998
Q 005564 449 KYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAV 527 (691)
Q Consensus 449 ~yg~-~IrlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~AC~G~~~C~~ai~dt~~~a~~l~~~l~~~ 527 (691)
+||. .+|+|++|||+|.+|++++++++++.|.+.|+.... +..+|+++||+|+++|++|++||+.++..|.+.+++.
T Consensus 378 ~yg~g~irlT~~qniil~~v~~~~l~~i~~~L~~~Gl~~~~--s~~~r~~~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~ 455 (566)
T 1zj8_A 378 RAGSDRIRFTPYQKLVILDIPDALLDDLIAGLDALGLQSRP--SHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERR 455 (566)
T ss_dssp HHTCCCEEECTTSCEEEEEECHHHHHHHHHHHHHTTCBSSC--CHHHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHH
T ss_pred HHCCCEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 84999799988886799369989999999999973997789--8753651168882537550331899999999999998
Q ss_pred HHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECC--------CEEEEEECCCCC-CCCCHHHHC-CCCCHHHHHHH
Q ss_conf 88607777874289997599999887445179993408--------439999837789-852111420-58996679999
Q 005564 528 FEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGP--------NSYQIWLGGTHN-QTTLARTFM-NKVKVQELEKV 597 (691)
Q Consensus 528 ~~~~~l~~p~k~kI~iSGCpn~Ca~~~~aDIGlvG~g~--------~gy~I~iGG~~~-~~rlg~~l~-~~V~~eei~~~ 597 (691)
+...+...|.+|+|+||||||+|++++++||||+|... ++|+||+||+.+ .+++|+.+. ..++.++++++
T Consensus 456 l~~~~~~~~~~~ki~vSGCpN~Ca~~~~aDIGivG~~~~~~~g~~~~gy~i~lGG~~g~~~~~g~~l~~~~v~~eei~~~ 535 (566)
T 1zj8_A 456 LEDINSQLDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDY 535 (566)
T ss_dssp THHHHTTCCSCCCEEEESSTTCTTCGGGSSEEEEEEEEESSSSCEEEEEEEEESCBCSTTCBCCEECTTCCEETTTHHHH
T ss_pred HHCCCCCCCCCCEEEEECCCCCCHHHHHCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 62224346778558871487566344422534787861577886120599983787787774211034578999999999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHH
Q ss_conf 99999999995114898377899852979999
Q 005564 598 FEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQ 629 (691)
Q Consensus 598 ie~ll~~y~~~~~~~~Erf~~~i~R~G~e~l~ 629 (691)
+++++++|.+++++ +|||++|++|+|++.|+
T Consensus 536 l~~l~~~y~~~~~~-~Erf~~~i~R~G~~~~~ 566 (566)
T 1zj8_A 536 IDRVVRNFVKHRSE-GERFAQWVIRAEEDDLR 566 (566)
T ss_dssp HHHHHHHHHHSCCT-TCCHHHHHHHSCGGGGC
T ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHCCHHHCC
T ss_conf 99999999983778-99799999963877339
No 3
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=1.00 E-value=1 Score=843.98 Aligned_cols=482 Identities=37% Similarity=0.667 Sum_probs=447.6
Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC-CCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCC
Q ss_conf 764008999852997557999999999999819-9929915798679827896899999999999609-98777789886
Q 005564 123 AKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNR 200 (691)
Q Consensus 123 ~~~~~fmlRir~pgG~lt~~ql~~la~iA~~yG-~g~i~lTtRQ~iQLhgi~~~~l~~v~~~L~~~~G-~t~ga~Gd~~R 200 (691)
++.|+||+|+|+|+|.+|++||+.|++||++|| +|++|+|||||||||||.++++++++++| .+.| +++++|||++|
T Consensus 2 ~~~~~~m~Rvr~p~G~lt~~qlr~la~ia~~yg~~g~~~~TtRq~iql~gi~~~~~~~i~~~L-~~~gl~~~~~~Gd~~R 80 (497)
T 1aop_A 2 EPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQML-HSVGLDALATANDMNR 80 (497)
T ss_dssp ------CEECCCGGGEEEHHHHHHHHHHHHHHBSSCCEEECTTSCEEECCBC-----CHHHHH-HHTTCCCC---CCCBC
T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCHHHHHHHHHHH-HHCCCCCCCCCCCCCC
T ss_conf 866217999746885569999999999999858998099977524796688888899999999-9859987646689987
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40048998872444569999999998718976653211134322236899023410368999999999999876788899
Q 005564 201 NVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLP 280 (691)
Q Consensus 201 NI~acp~~~~~~~~~d~~~~a~~i~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~~LP 280 (691)
||++||++.+..++.|+++++.+|+++|.+.+.+|+|+|++++++.+.. .+|+|+..+||
T Consensus 81 ni~~~p~~~~~~~~~d~~~~a~~l~~~l~~~~~~~~e~wl~~~~~~~~~--------------------~~p~~~~~~LP 140 (497)
T 1aop_A 81 NVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTD--------------------EEPILGQTYLP 140 (497)
T ss_dssp CCEECSSCSSTTHHHHHHHHHHHHHHHTCC----------------------------------------------CCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCC--------------------CCCCCCCCCCC
T ss_conf 7356886457714778999999999986421312455530332224555--------------------78554567899
Q ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 83289996699998446338789999954799610599998278887677666567444335789977899999999999
Q 005564 281 RKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVT 360 (691)
Q Consensus 281 rKfKi~isgc~~~c~~~~~~Diglv~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~lg~v~~eev~~~~~aii~~ 360 (691)
|||||+||||+++|+++.+|||||+++.++ |+..||+|||||++|++|++++|+|++|+.++||+++++++++++|+++
T Consensus 141 ~Kfkiavsg~~~~~~~~~~~Dig~i~~~~~-g~~~G~~v~vGG~~g~~~~~~~~~p~~~~~~~~v~~~~~~~~~~ai~~~ 219 (497)
T 1aop_A 141 RKFKTTVVIPPQNDIDLHANDMNFVAIAEN-GKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTT 219 (497)
T ss_dssp SCBCEEEECTTBCTTCGGGSSEEEEEEEET-TEEEEEEEEECCBCCCCTTCTTCCCBCCEEEEEEEGGGHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCCCCCCCCEEEEEEEEC-CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 857999966875664764677289989978-9534689996266466677556777511403776899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCC---CH
Q ss_conf 999389984102459999995131479999999839878888889844345666648606991899998189987---79
Q 005564 361 QRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRI---AG 437 (691)
Q Consensus 361 ~rd~G~R~~R~~aRlk~li~~~G~e~f~e~v~~~~g~~l~~~~~~~~~~~~d~~G~~~q~dG~~~v~i~ip~Gri---t~ 437 (691)
|+++|+|.+|+++||||+|++||+++|+++++++++.++++..+.+.+...+|+||++|+||.|+|++++|+|++ ++
T Consensus 220 ~~~~g~r~~r~~aR~~~li~~~G~e~f~~~v~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~G~~~v~v~~p~G~l~~~~~ 299 (497)
T 1aop_A 220 QRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPA 299 (497)
T ss_dssp HHHHSCSSCSTTCSHHHHHHHHCHHHHHHHHHHHHTCCCBCCCCCCCCBCCCCCEEEECSTTEEEEEECCGGGEECEETT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCH
T ss_conf 99868722125679999999869999999999985887777787775556634047876896399999777880157888
Q ss_pred H-HHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHH
Q ss_conf 9-999999999992993996679848983689579899999999889988888898865288459999993036678731
Q 005564 438 K-MKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERG 516 (691)
Q Consensus 438 ~-ql~~LaeiAe~yg~~IrlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~AC~G~~~C~~ai~dt~~~ 516 (691)
+ +++.||+||++|+..||+|++|||+|.||++++++++++.|.++|+.. . .++.+|+++||+|+++|+++++||+++
T Consensus 300 ~~~l~~ladia~~ygg~irlT~~qni~l~gv~~~~l~~l~~~L~~~Gl~~-~-~~~~~r~i~aC~G~~~C~~a~~dt~~~ 377 (497)
T 1aop_A 300 RPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMN-A-VTPQRENSMACVSFPTCPLAMAEAERF 377 (497)
T ss_dssp EEHHHHHHHHHHHCSSEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTTC-C-CCHHHHTEEECCCTTTCTTCSSCSTTT
T ss_pred HHHHHHHHHHHHHHCCEEEECCCCCEEEECCCHHHHHHHHHHHHHCCCCC-C-CCCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 99999999999986998999489988992389899999999999779977-8-887541135156736586313548999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCHHHHCCCCCHHHHHH
Q ss_conf 99999999998886077778742899975999998874451799934084399998377898521114205899667999
Q 005564 517 IPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEK 596 (691)
Q Consensus 517 a~~l~~~l~~~~~~~~l~~p~k~kI~iSGCpn~Ca~~~~aDIGlvG~g~~gy~I~iGG~~~~~rlg~~l~~~V~~eei~~ 596 (691)
++.|.+++++.+...++. |.||+|+||||||+|++++++||||+|...++|+||+||+.+++++|+++...++.+++++
T Consensus 378 a~~l~~~l~~~~~~~~l~-p~~~~i~vSGCpn~C~~~~~aDIGi~G~~~g~y~i~lGG~~~~~~~g~~~~~~v~~~ei~~ 456 (497)
T 1aop_A 378 LPSFIDNIDNLMAKHGVS-DEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILA 456 (497)
T ss_dssp HHHHHHHHHHHHHHTTCT-TCCCCEEEESSTTCTTCGGGSSEEEEEEETTEEEEEECCCTTSCSCCEEEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCC-CCCEEEEEECCCCHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCHHHHHHCCCCHHHHHH
T ss_conf 999999999987406788-7663899978803000110087899985379789998997888640446404799999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHH
Q ss_conf 9999999999951148983778998529799999
Q 005564 597 VFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQE 630 (691)
Q Consensus 597 ~ie~ll~~y~~~~~~~~Erf~~~i~R~G~e~l~~ 630 (691)
++++++++|.+++.+ +|||++|++|+|++.|.+
T Consensus 457 ~l~~l~~~y~~~~~~-~Erf~~~i~R~G~~~~~~ 489 (497)
T 1aop_A 457 SLDELIGRWAKEREA-GEGFGDFTVRAGIIRPVL 489 (497)
T ss_dssp HHHHHHHHHHHHCCT-TCCHHHHHHHTTSSCCCS
T ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHCCCHHHHH
T ss_conf 999999999970877-996999999769387633
No 4
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=1.00 E-value=1 Score=807.41 Aligned_cols=483 Identities=24% Similarity=0.387 Sum_probs=423.9
Q ss_pred CCCCCHHHHHHHHCCCCCCCH---HHHHHHC-CCCC-----CHHHHH-HHHHCEEEEECCCCCCCCCCCEEEEEEECCCC
Q ss_conf 789993454421049975106---8865300-9999-----976778-77624025412576458764008999852997
Q 005564 68 ETKRSKVEIIKEQSNFIRYPL---NEELLTD-APNV-----NESATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCG 137 (691)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~~~~---~~~~~~~-~~~~-----~~~~~~-~lk~~G~y~q~~r~~r~~~~~~fmlRir~pgG 137 (691)
..|+|++|+||++|+||+... ++++++. .+++ ++++++ ++||+|+|+|+.+. .++||+|+|+|+|
T Consensus 70 ~~~l~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~r~k~~G~y~~~~~~-----~~~~mvRvr~PgG 144 (591)
T 3b0g_A 70 RKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQ-----YGRFMMRLKLPNG 144 (591)
T ss_dssp CTTCCHHHHHHHHSCTTHHHHTCHHHHHTTSCHHHHTTSHHHHHHHHTGGGGGTEEECTTTS-----TTEEEEECBCGGG
T ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCEEEEECCCC-----CCEEEEEECCCCC
T ss_conf 46788366665235773140132289886336310023569988999876242047731677-----8717998548981
Q ss_pred CCCHHHHHHHHHHHHHHC-CCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCC-CCHHHH
Q ss_conf 557999999999999819-9929915798679827896899999999999609-9877778988640048998-872444
Q 005564 138 KVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDY 214 (691)
Q Consensus 138 ~lt~~ql~~la~iA~~yG-~g~i~lTtRQ~iQLhgi~~~~l~~v~~~L~~~~G-~t~ga~Gd~~RNI~acp~~-~~~~~~ 214 (691)
.+|++||+.|++||++|| +|++++|||||||||||.++++++++++| .++| .+.++|||++|||++||++ .|..++
T Consensus 145 ~lt~~qlr~ladia~~yg~~G~i~~TtRq~iql~gi~~~~l~~i~~~L-~~~gl~~~~~~gd~~Rnv~~~p~~g~c~~~~ 223 (591)
T 3b0g_A 145 VTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGL-AEVGLTSLQSGMDNVRNPVGNPLAGIDPEEI 223 (591)
T ss_dssp EEEHHHHHHHHHHHHHTGGGCEEEECTTSCEEEEEEEGGGHHHHHHHH-HHTTCBCTTCSSSSBCCCBCCTTTTTCTTCS
T ss_pred EECHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCEEECCCCCCCCCHH
T ss_conf 478999999999999868997199967863798068888999999999-9859987767667887847288855685214
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 56999999999871897665321113432223689902341036899999999999987678889983289996699998
Q 005564 215 LFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS 294 (691)
Q Consensus 215 ~d~~~~a~~i~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isgc~~~c 294 (691)
+|+++++.+|.++|++++. +.+...+|||||||+||||+++|
T Consensus 224 ~D~~~~a~~l~~~l~~~~~--------------------------------------~~~~~~~LPrKfKiavsgc~~~c 265 (591)
T 3b0g_A 224 VDTRPYTNLLSQFITGNSR--------------------------------------GNPAVSNLPRKWNPCVVGSHDLY 265 (591)
T ss_dssp SCCHHHHHHHHHHHHTTTT--------------------------------------CCGGGSCCSSCBCEEECCCTTCT
T ss_pred HHHHHHHHHHHHHHHHCCC--------------------------------------CCCCCCCCCCCEEEEECCCCCCC
T ss_conf 4599999999999752035--------------------------------------78322356765489972476455
Q ss_pred CCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 446338789999954799610599998278887677666567444335-7899778999999999999993899841024
Q 005564 295 VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL-GYVPKEDILYAVKAIVVTQRENGRRDDRKYS 373 (691)
Q Consensus 295 ~~~~~~Diglv~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~l-g~v~~eev~~~~~aii~~~rd~G~R~~R~~a 373 (691)
+.+.++||||+++.++ |. .||+|+|||++|.++ |+++.++ .||++|++++++++|+++|+++|+|++|+++
T Consensus 266 ~~~~~~Dig~i~~~~~-g~-~Gf~v~vGG~~g~~~------~~~~~~l~~~v~~e~v~~~~~ai~~~~~~~G~r~~R~ka 337 (591)
T 3b0g_A 266 EHPHINDLAYMPATKD-GR-FGFNLLVGGFFSAKR------CDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKC 337 (591)
T ss_dssp TCGGGSSEEEEEEEET-TE-EEEEEEECCEECSSC------EECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGC
T ss_pred CCCCCCEEEEEEEECC-CC-CEEEEEECCCCCCCC------CCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 4452664899989818-97-248999856557888------631224036568999999999999999996663321220
Q ss_pred HHHHHHHHHCHHHHHHHHHHHH-CCCCCCCCC--C--CCCCCCCCCCEEECCC-CCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 5999999513147999999983-987888888--9--8443456666486069-91899998189987799999999999
Q 005564 374 RMKYLISSWGIEKFRSVVEQYY-GKKFEPFRQ--L--PEWEFKSHLGWHEQGD-GGLFCGLHVDNGRIAGKMKKTLREII 447 (691)
Q Consensus 374 Rlk~li~~~G~e~f~e~v~~~~-g~~l~~~~~--~--~~~~~~d~~G~~~q~d-G~~~v~i~ip~Grit~~ql~~LaeiA 447 (691)
|++|+|++||+++|++++++++ +.++.+..+ . ..|...+|+||++|++ |.|++++++|+|+++++|++.||++|
T Consensus 338 R~~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~~qk~~g~~~v~v~~p~Grlt~~~Lr~LadiA 417 (591)
T 3b0g_A 338 RMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLA 417 (591)
T ss_dssp SHHHHHHHHCHHHHHHHHHHTSGGGCCBCCCSCCSCCSSCCCCCCSEEEECSSTTEEEEEECCGGGEECHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 18999986157999999998743586787765465433433356665042376971899996777578899999999999
Q ss_pred HHHCC-EEEECCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99299-39966798489836895798999999998899888888988652884599999930366787319999999999
Q 005564 448 EKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRA 526 (691)
Q Consensus 448 e~yg~-~IrlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~~~~~~~~~~r~v~AC~G~~~C~~ai~dt~~~a~~l~~~l~~ 526 (691)
++||. .+|+|+||||+|++|+.++++++++.|...++... .++.+|+++||+|+++|+++++||++++..|.++++.
T Consensus 418 e~yg~g~irlT~~QnI~l~~v~~e~l~~l~~el~~~~~~~~--~g~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~ 495 (591)
T 3b0g_A 418 DEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPD--PPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQR 495 (591)
T ss_dssp HHHSSSEEEECTTSCEEEEEEEGGGHHHHTTCGGGGTSCSS--CCHHHHTCEECCGGGTCTTCSSCCHHHHHHHHHHHHH
T ss_pred HHHCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHCCCCCC--CCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98399869987888647679998899999999875447778--8877453135889665752465599999999999998
Q ss_pred HHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEC--------CCEEEEEECCCCC-CCCCHHHHCCCCCHHHHHHH
Q ss_conf 88860777787428999759999988744517999340--------8439999837789-85211142058996679999
Q 005564 527 VFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG--------PNSYQIWLGGTHN-QTTLARTFMNKVKVQELEKV 597 (691)
Q Consensus 527 ~~~~~~l~~p~k~kI~iSGCpn~Ca~~~~aDIGlvG~g--------~~gy~I~iGG~~~-~~rlg~~l~~~V~~eei~~~ 597 (691)
.+ . +|.||+|+||||||+|++++++||||+|.. .++|+||+||+.+ ++++|+.+...|+.++++++
T Consensus 496 ~~---~--lp~k~kI~iSGCpn~C~~~~~aDIG~vG~~~~~~~G~~~~gy~v~lGG~~g~~~rlg~~l~~~v~~eev~~~ 570 (591)
T 3b0g_A 496 QV---S--LTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPL 570 (591)
T ss_dssp HE---E--CCSCCCEEEESSTTCTTCGGGSSEEEEEEEEECTTSCEEEEEEEEECCBCSSSCBCCEEEEEEEEGGGHHHH
T ss_pred HC---C--CCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCCCHHHHHHH
T ss_conf 63---7--886438998389875667651668999776337888515626999898579887413487568889999999
Q ss_pred HHHHHH-HHHHHC
Q ss_conf 999999-999951
Q 005564 598 FEPLFY-YWKQKR 609 (691)
Q Consensus 598 ie~ll~-~y~~~~ 609 (691)
+++++. .|.+..
T Consensus 571 i~~ll~~~y~~~~ 583 (591)
T 3b0g_A 571 VVDLLVNNFGAVP 583 (591)
T ss_dssp HHHHHHHHSCCEE
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999976441
No 5
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=1.00 E-value=1 Score=806.33 Aligned_cols=483 Identities=24% Similarity=0.380 Sum_probs=425.0
Q ss_pred CCCCCHHHHHHHHCCCCCCCH---HHHHHHC-CCCC-----CHHHHH-HHHHCEEEEECCCCCCCCCCCEEEEEEECCCC
Q ss_conf 789993454421049975106---8865300-9999-----976778-77624025412576458764008999852997
Q 005564 68 ETKRSKVEIIKEQSNFIRYPL---NEELLTD-APNV-----NESATQ-LIKFHGSYQQYNRDERGAKSYSFMLRTKNPCG 137 (691)
Q Consensus 68 ~~k~~~~E~~K~~~~~l~~~~---~~~~~~~-~~~~-----~~~~~~-~lk~~G~y~q~~r~~r~~~~~~fmlRir~pgG 137 (691)
..|+|++|+||++|+||+... ++++++. .++| ++++++ ++||||+|+|+.+. .++||+|+|+|+|
T Consensus 87 ~~~l~~~E~~K~~~~~l~~~~~~~i~~~a~~~~~~~~~~~~~~~d~~~rlk~~G~y~r~~~~-----~~~~mvRvr~PgG 161 (608)
T 2akj_A 87 RSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGLFHRRKHH-----YGRFMMRLKLPNG 161 (608)
T ss_dssp CSSCCHHHHHHHHSCTTHHHHTCHHHHHTTCCHHHHTTSHHHHHHHHTGGGGGTEEECHHHH-----TTCEEEECCCGGG
T ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCEEEECCCC-----CCEEEEEECCCCC
T ss_conf 56788366665225774350132289885336210013569988999887233305514677-----8259999657886
Q ss_pred CCCHHHHHHHHHHHHHHC-CCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCC-CCHHHH
Q ss_conf 557999999999999819-9929915798679827896899999999999609-9877778988640048998-872444
Q 005564 138 KVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAP-LVRKDY 214 (691)
Q Consensus 138 ~lt~~ql~~la~iA~~yG-~g~i~lTtRQ~iQLhgi~~~~l~~v~~~L~~~~G-~t~ga~Gd~~RNI~acp~~-~~~~~~ 214 (691)
.+|++||+.|++||++|| +|++++|||||||||||.++++++++++| .++| .+.++|||++|||++||++ .|..++
T Consensus 162 ~lt~~qlr~ladiA~kyg~~G~i~lTtRq~iql~gi~~e~l~~i~~~L-~~~Gl~~~~~~gd~~Rnv~~~p~~g~c~~~~ 240 (608)
T 2akj_A 162 VTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGL-ESVGLTSLQSGMDNVRNPVGNPLAGIDPHEI 240 (608)
T ss_dssp EEEHHHHHHHHHHHHTTGGGCCEEECTTSCEEEEEECGGGHHHHHHHH-HTTTCCCTTCSSSSBCCCBCCTTTTTCTTCS
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCEEECCCCCCCCCHH
T ss_conf 459999999999999859997299966863698078888899999999-9859987777677888857288855684025
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 56999999999871897665321113432223689902341036899999999999987678889983289996699998
Q 005564 215 LFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNS 294 (691)
Q Consensus 215 ~d~~~~a~~i~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~~LPrKfKi~isgc~~~c 294 (691)
.|+++++.+|.++|.++. .+.++..+|||||||+||||+++|
T Consensus 241 ~D~~~~a~~l~~~l~~~~--------------------------------------~~~~~~~~LPrKfKiavsgc~~~c 282 (608)
T 2akj_A 241 VDTRPFTNLISQFVTANS--------------------------------------RGNLSITNLPRKWNPCVIGSHDLY 282 (608)
T ss_dssp SCCHHHHHHHHHHHTTTT--------------------------------------TCCGGGSCCSSCBCEEECCCTTCT
T ss_pred HHHHHHHHHHHHHHHHCC--------------------------------------CCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 569999999999875103--------------------------------------578421256763489863686354
Q ss_pred CCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 4463387899999547996105999982788876776665674443357-899778999999999999993899841024
Q 005564 295 VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPKEDILYAVKAIVVTQRENGRRDDRKYS 373 (691)
Q Consensus 295 ~~~~~~Diglv~~~~~~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~lg-~v~~eev~~~~~aii~~~rd~G~R~~R~~a 373 (691)
++++++||||++++++ |. .||+|||||++|.++ |+++.++. ||+++++++++++|+++|+++|+|.+|+++
T Consensus 283 ~~~~~~Dig~i~~~~~-g~-~Gf~v~vGGg~g~~~------~~~~~~l~~~v~~eev~~~~~ai~~~~~~~G~r~~R~~a 354 (608)
T 2akj_A 283 EHPHINDLAYMPATKN-GK-FGFNLLVGGFFSIKR------CEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKC 354 (608)
T ss_dssp TCGGGSSEEEEEEESS-SS-EEEEEEECCEECSSC------EECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGC
T ss_pred CCCCCCEEEEEEEEEC-CC-CEEEEEECCCCCCCC------CCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 3453661899979808-95-279999776557777------632403036568999999999999999986772211211
Q ss_pred HHHHHHHHHCHHHHHHHHHHHH-CCCCCCCCCC----CCCCCCCCCCEEECCC-CCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 5999999513147999999983-9878888889----8443456666486069-91899998189987799999999999
Q 005564 374 RMKYLISSWGIEKFRSVVEQYY-GKKFEPFRQL----PEWEFKSHLGWHEQGD-GGLFCGLHVDNGRIAGKMKKTLREII 447 (691)
Q Consensus 374 Rlk~li~~~G~e~f~e~v~~~~-g~~l~~~~~~----~~~~~~d~~G~~~q~d-G~~~v~i~ip~Grit~~ql~~LaeiA 447 (691)
||+|+|++||+++|++++++++ +.++.+..+. ..|...+|+||++|++ |.|++++++|+|+++++|++.||+||
T Consensus 355 Rl~~li~~~G~e~f~~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~Grlt~~qLr~LadiA 434 (608)
T 2akj_A 355 RMMWLIDELGMEAFRGEVEKRMPEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIA 434 (608)
T ss_dssp SHHHHHHHHCHHHHHHHHHTTSTTSCCCCCCSCBCSCSSCCCCCCBEEEECSSTTEEEEEECCGGGEECHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 57889875062778999998741587776765555432100134445030575975999996777538899999999999
Q ss_pred HHHCC-EEEECCCCCEEECCCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99299-39966798489836895798999999998-89988888898865288459999993036678731999999999
Q 005564 448 EKYNL-NVRITPNQNIILCDIRKAWKRPITTALAQ-AGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIR 525 (691)
Q Consensus 448 e~yg~-~IrlT~~QnI~L~gI~~e~l~~i~~~L~~-~Gl~~~~~~~~~~r~v~AC~G~~~C~~ai~dt~~~a~~l~~~l~ 525 (691)
++||. .+|+|+||||+|++|+.++++++++.|.. .++... .++.+|++++|+|+++|+++++||++++..|.++++
T Consensus 435 e~yg~G~irlT~~QnIil~~v~~e~l~~l~~el~~~~~~~~~--~g~~~r~i~aC~G~~~C~~a~~Dt~~~a~~l~~~l~ 512 (608)
T 2akj_A 435 DVYGSGELRLTVEQNIIIPNVENSKIDSLLNEPLLKERYSPE--PPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQ 512 (608)
T ss_dssp HHHSSSEEEEETTTEEEEEEEETTTHHHHTTSHHHHTTSCSS--CCTTTTEEEECCGGGTCTTCSSCCHHHHHHHHHHHH
T ss_pred HHHCCCEEEECCCCCEEECCCCHHHHHHHHHHHHHHCCCCCC--CCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 984998699878887487888888899999987654066778--886536445078978787323337999999999999
Q ss_pred HHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEC--------CCEEEEEECCCCC-CCCCHHHHCCCCCHHHHHH
Q ss_conf 988860777787428999759999988744517999340--------8439999837789-8521114205899667999
Q 005564 526 AVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVGDG--------PNSYQIWLGGTHN-QTTLARTFMNKVKVQELEK 596 (691)
Q Consensus 526 ~~~~~~~l~~p~k~kI~iSGCpn~Ca~~~~aDIGlvG~g--------~~gy~I~iGG~~~-~~rlg~~l~~~V~~eei~~ 596 (691)
..+ . +|.||+|+||||||+|++|+++||||+|.. ..+|+||+||+.+ ++++|+.+..+|+.+++++
T Consensus 513 ~~~---~--lp~k~kI~vSGCpn~Ca~~~iaDIGlvG~~~~~~~G~~~~gy~v~lGG~~g~~~rlg~~l~~~v~~eev~~ 587 (608)
T 2akj_A 513 RLV---S--VTRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSDSHLGDIYKKAVPCKDLVP 587 (608)
T ss_dssp HHE---E--CSSCCEEEEESSTTCTTCGGGSSEEEEEEEEECTTCCEEEEEEEEECCBCSTTCBCCEEEEEEEETTTHHH
T ss_pred HHC---C--CCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCHHHHHH
T ss_conf 862---7--88652799848987554442332689977413678853451799989817887731447655878999999
Q ss_pred HHHHHHH-HHHHHC
Q ss_conf 9999999-999951
Q 005564 597 VFEPLFY-YWKQKR 609 (691)
Q Consensus 597 ~ie~ll~-~y~~~~ 609 (691)
++++++. .|.+..
T Consensus 588 ~l~~ll~~~y~~~~ 601 (608)
T 2akj_A 588 VVAEILINQFGAVP 601 (608)
T ss_dssp HHHHHHHHHSCCEE
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999876431
No 6
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=1.00 E-value=1 Score=321.89 Aligned_cols=215 Identities=22% Similarity=0.308 Sum_probs=190.1
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCCHHHHHHHHHHHCC-------CCCCCCCCC
Q ss_conf 0089998529975579999999999998199929915798679827896899999999999609-------987777898
Q 005564 126 YSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG-------STLGACGDL 198 (691)
Q Consensus 126 ~~fmlRir~pgG~lt~~ql~~la~iA~~yG~g~i~lTtRQ~iQLhgi~~~~l~~v~~~L~~~~G-------~t~ga~Gd~ 198 (691)
+.||+|++.| |.+|++||+.|++||++||+|++++|||||||||||..+++++++++| .+.| ++++++|+.
T Consensus 61 ~~~tvRv~~p-G~lt~~qLr~LadiA~kyg~G~irlTtrqnI~l~gi~~e~l~~l~~~L-~~~Gl~~~~~~~~~g~~G~~ 138 (386)
T 3or1_B 61 KVFTVRCGAA-RLMSTSHIREACEIAKKFCNGHLRFTTRNNIEFMVDNEETLKALVADL-KTRKFAAGSFKFPIGGTGAS 138 (386)
T ss_dssp EEEEEEECCC-SEEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESSHHHHHHHHHHH-TTCBCTTSCBSSCBCCCSSS
T ss_pred CEEEEEECCC-CEECHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCC
T ss_conf 0899996899-552899999999999996899598879982999628999999999999-85598766667875666776
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8640048998-872444569999999998718976653211134322236899023410368999999999999876788
Q 005564 199 NRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQ 277 (691)
Q Consensus 199 ~RNI~acp~~-~~~~~~~d~~~~a~~i~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~ 277 (691)
+|||++||++ .|..+..|+++++.+|.+.|.+ .|...
T Consensus 139 vRni~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~------------------------------------------~~~~~ 176 (386)
T 3or1_B 139 ISNIVHTQGWVYCHTPATDASGPVKAVMDELFE------------------------------------------EFTSM 176 (386)
T ss_dssp CCCCBCCCGGGTCSSCSSCSHHHHHHHHHHTHH------------------------------------------HHSCC
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH------------------------------------------HHHCC
T ss_conf 342685687545641677799999999999987------------------------------------------64023
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEEEEECC----------------------------------CC-----------
Q ss_conf 899832899966999984463387899999547----------------------------------99-----------
Q 005564 278 FLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE----------------------------------NG----------- 312 (691)
Q Consensus 278 ~LPrKfKi~isgc~~~c~~~~~~Diglv~~~~~----------------------------------~g----------- 312 (691)
.||+||||+||||+++|+.++.+||||++++.+ +|
T Consensus 177 ~LP~K~kI~vsGCpn~C~~~~~~Dig~vg~~r~~p~id~e~~~~~Ce~~~cv~~CPt~AI~~~~~~~~g~~~~~v~id~~ 256 (386)
T 3or1_B 177 RLPAIVRVSLACCINMCGAVHCSDIGLVGIHRKPPMIDHENLAELCEIPLAVAACPTAAVKPITAEVNGQKVKSVAINND 256 (386)
T ss_dssp CSSSCCCEEEESSTTCCSSGGGSSEEEEEECCSCCCCCTTTHHHHCCHHHHHHHCTTCCEEEEEEEETTEEEEEEEECTT
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECHHHHCCCCCCHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54323577303686443122223434311235440442445014566133565191632645433568852000004787
Q ss_pred --------------------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCH-----HHHHHHHHHHHHHHHHHCC
Q ss_conf --------------------6105999982788876776665674443357-8997-----7899999999999999389
Q 005564 313 --------------------EPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPK-----EDILYAVKAIVVTQRENGR 366 (691)
Q Consensus 313 --------------------~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~lg-~v~~-----eev~~~~~aii~~~rd~G~ 366 (691)
+..|+.|++||+.|... ..|++++.+. |++. +++.+++++++.+|+++|+
T Consensus 257 ~Ci~Cg~C~~~CP~~Ai~~~~~~g~~i~vGGk~~~~~----~~~~~~~~l~~~~~~e~~~~~e~~~~i~~i~~~~~e~g~ 332 (386)
T 3or1_B 257 RCMYCGNCYTMCPALPLSDGTGDGIAIMVGGKISNRI----KVPSFSKVVVAFVPNEPPRWPTMAKIVKKIVEVYAEDAR 332 (386)
T ss_dssp TCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBCCCSS----SCCBCCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCHHHHCCHHHCCCCCCCEEEEEECCCCCCCC----CCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 6884013777695833747888458999844247666----666101101055466775478999999999999998787
Q ss_pred CCCCHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 98410245999999513147999999
Q 005564 367 RDDRKYSRMKYLISSWGIEKFRSVVE 392 (691)
Q Consensus 367 R~~R~~aRlk~li~~~G~e~f~e~v~ 392 (691)
+++||+++|+|+|+++|+++++
T Consensus 333 ----~~ER~g~~i~R~G~~~f~~~~~ 354 (386)
T 3or1_B 333 ----KYERIGDWIHRIGWETFYEKTG 354 (386)
T ss_dssp ----TTCCHHHHHHHHCHHHHHHHHC
T ss_pred ----CCCCHHHHHHHCCHHHHHHHHC
T ss_conf ----6777999999819999999977
No 7
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=1.00 E-value=1 Score=318.09 Aligned_cols=218 Identities=17% Similarity=0.219 Sum_probs=191.6
Q ss_pred CCCCEEEEEEECCCCC-CCHHHHHHHHHHHHHHCCCEEEEC-CCCCEEECCCCCCCHHHHHHHHHH--HCCCCCCCCCCC
Q ss_conf 7640089998529975-579999999999998199929915-798679827896899999999999--609987777898
Q 005564 123 AKSYSFMLRTKNPCGK-VSNQLYLTMDDLADQFGIGTLRLT-TRQTFQLHGVLKKDLKTVMRSIIR--SMGSTLGACGDL 198 (691)
Q Consensus 123 ~~~~~fmlRir~pgG~-lt~~ql~~la~iA~~yG~g~i~lT-tRQ~iQLhgi~~~~l~~v~~~L~~--~~G~t~ga~Gd~ 198 (691)
+-.+.||+|+++|+|. +|++||+.|++||++||+|++++| |||||||+||..+++++++++| . +.|.+++++|+.
T Consensus 91 ~~~~~~tvRv~~P~Gr~lt~~qLr~LadIAekyG~G~irlTgtrqnI~l~gv~~e~l~~i~~eL-~~~~~Gl~~ggsG~~ 169 (418)
T 3mm5_A 91 EVEHFHTMRINQPSGWFYSTKALRGLCDVWEKWGSGLTNFHGSTGDIIFLGTRSEYLQPCFEDL-GNLEIPFDIGGSGSD 169 (418)
T ss_dssp GGSBCEEEEECCCGGGEEEHHHHHHHHHHHHHHSCSEEETTCSSSCEEEEEECHHHHHHHHHHH-HHSSSCCCBCCCSSS
T ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCHHHHHHHHHHH-HCCCCCCCCCCCCCC
T ss_conf 7324789998578886349999999999999858987998358876586789989999999998-612345776775665
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8640048998-872444569999999998718976653211134322236899023410368999999999999876788
Q 005564 199 NRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQ 277 (691)
Q Consensus 199 ~RNI~acp~~-~~~~~~~d~~~~a~~i~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~yg~~ 277 (691)
+|||++||+. .|..+..|+++++..|.+.|.. . +...
T Consensus 170 vRni~aC~G~~~C~~a~~Dt~~la~~L~~~l~~-------~-----------------------------------~~~~ 207 (418)
T 3mm5_A 170 LRTPSACMGPALCEFACYDTLELCYDLTMTYQD-------E-----------------------------------LHRP 207 (418)
T ss_dssp BCCCEECCGGGTCTTCSSCHHHHHHHHHHHTHH-------H-----------------------------------HHSC
T ss_pred CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH-------H-----------------------------------HHHC
T ss_conf 511372577565630023189999999999987-------6-----------------------------------5412
Q ss_pred CCCCCEEEEEECCCCCCCCC-CCCCEEEEEEECC----------------------------------------------
Q ss_conf 89983289996699998446-3387899999547----------------------------------------------
Q 005564 278 FLPRKFKVAVTVPTDNSVDI-LTNDIGVVVVSDE---------------------------------------------- 310 (691)
Q Consensus 278 ~LPrKfKi~isgc~~~c~~~-~~~Diglv~~~~~---------------------------------------------- 310 (691)
.||+||||+||||+++|+.+ ..+||||++++.+
T Consensus 208 ~LP~KfKI~iSGCpN~C~~~~~~~DIGiiG~~r~~~~iD~e~~~~~~~gc~i~~~cv~~CPt~Ai~~~~~~~~id~~~Ci 287 (418)
T 3mm5_A 208 MWPYKFKIKCAGCPNDCVASKARSDFAIIGTWKDDIKVDQEAVKEYASWMDIENEVVKLCPTGAIKWDGKELTIDNRECV 287 (418)
T ss_dssp CSSSCBCEEEESSTTCTTCHHHHCSEEEEEEESSCCEECHHHHHHHHTTSCHHHHTGGGCTTCCEEECSSCEEECTTTCC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHCC
T ss_conf 58850588640456431647876255321344653335678775432566647641124971115057762688704467
Q ss_pred --------------CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCC----HHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf --------------996105999982788876776665674443357-899----7789999999999999938998410
Q 005564 311 --------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVP----KEDILYAVKAIVVTQRENGRRDDRK 371 (691)
Q Consensus 311 --------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~lg-~v~----~eev~~~~~aii~~~rd~G~R~~R~ 371 (691)
.+...||.|++||+.+.. ..|++++.+. |++ .+++++++++|+++|+++|.+
T Consensus 288 ~Cg~Ci~~CP~~~~~~~~~g~~I~vGGk~~~~-----~g~~lg~~~~pf~~~~~p~eei~~~ie~i~~~~~e~g~~---- 358 (418)
T 3mm5_A 288 RCMHCINKMPKALKPGDERGATILIGGKAPFV-----EGAVIGWVAVPFVEVEKPYDEIKEILEAIWDWWDEEGKF---- 358 (418)
T ss_dssp CCCHHHHHCTTTEECCSSEEEEEEECCBCSTT-----TCCBCCEEEEEEECCCTTCHHHHHHHHHHHHHHHHHCCT----
T ss_pred CCCHHHHHCCHHHCCCCCCCEEEEEECCCCCC-----CCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC----
T ss_conf 65816776967210288787599971898644-----566342566111457898899999999999999985888----
Q ss_pred HHHHHHHHHHHCHHHHHHHHH
Q ss_conf 245999999513147999999
Q 005564 372 YSRMKYLISSWGIEKFRSVVE 392 (691)
Q Consensus 372 ~aRlk~li~~~G~e~f~e~v~ 392 (691)
++||+++|+|+|++.|++.++
T Consensus 359 ~ER~g~~i~RiG~~~F~e~v~ 379 (418)
T 3mm5_A 359 RERIGELIWRKGMREFLKVIG 379 (418)
T ss_dssp TCCHHHHHHHHCHHHHHHHTT
T ss_pred CCCHHHHHHHCCHHHHHHHHC
T ss_conf 886989999729899999977
No 8
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=1.00 E-value=1 Score=311.96 Aligned_cols=230 Identities=17% Similarity=0.259 Sum_probs=197.1
Q ss_pred HHCEEEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCCHHHHHHHHHHH
Q ss_conf 62402541257645876400899985299755799999999999981999299157986798278968999999999996
Q 005564 108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRS 187 (691)
Q Consensus 108 k~~G~y~q~~r~~r~~~~~~fmlRir~pgG~lt~~ql~~la~iA~~yG~g~i~lTtRQ~iQLhgi~~~~l~~v~~~L~~~ 187 (691)
+--|++.|.+.. .++.||+|+++|+ .+|++||+.|++||++||+|++|+||||||||+||..+++++++++| .+
T Consensus 36 ~~~Gv~~~~~e~----gd~~~~vRv~~p~-~lt~~qlr~ladiA~kyg~G~lrlTtrqni~l~gv~~~~l~~l~~~L-~~ 109 (366)
T 3mm5_B 36 VKPGVIKRVAES----GDVIYVVRFGTPR-LLSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEV-QE 109 (366)
T ss_dssp EETTEEEEEETT----SCEEEEEEECCCS-EEEHHHHHHHHHHHHHHSTTEEEECTTSCEEEEESCGGGHHHHHHHH-HH
T ss_pred CCCCEEEEECCC----CCCEEEEEECCCC-CCCHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCHHHHHHHHHHH-HH
T ss_conf 789779865467----9956999977761-53799999999999996898388858870899559999999999999-87
Q ss_pred C-CCCCCCC-CC-----CCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
Q ss_conf 0-9987777-89-----88640048998-872444569999999998718976653211134322236899023410368
Q 005564 188 M-GSTLGAC-GD-----LNRNVLAPPAP-LVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARND 259 (691)
Q Consensus 188 ~-G~t~ga~-Gd-----~~RNI~acp~~-~~~~~~~d~~~~a~~i~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 259 (691)
. |.+++++ |+ .+|||++||++ .|..+..|+++++.+|.+.|.+
T Consensus 110 ~~Gl~~g~~~G~~~~~~~~rni~aC~g~~~C~~a~~Dt~~~a~~l~~~l~~----------------------------- 160 (366)
T 3mm5_B 110 RVGFPCGGTWDAVKGEYGLSNIVHTQGWIHCHTPAIDASGIVKAVMDELYE----------------------------- 160 (366)
T ss_dssp HHCCCBCCCEETTTTEECCCCCBCCCHHHHCSSCSSCSHHHHHHHHHHTHH-----------------------------
T ss_pred HCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH-----------------------------
T ss_conf 409895424687666552220025888555651777799999999999877-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECC-----------------------------
Q ss_conf 999999999999876788899832899966999984463387899999547-----------------------------
Q 005564 260 NSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDE----------------------------- 310 (691)
Q Consensus 260 ~~~~~~~~~~~e~~yg~~~LPrKfKi~isgc~~~c~~~~~~Diglv~~~~~----------------------------- 310 (691)
.|....||+||||+||||+++|+.+..+||||++++..
T Consensus 161 -------------~~~~~~LP~k~kI~vsgC~~~C~~~~~~Dig~~g~~r~~p~id~~~c~~~Ce~~~Cv~~CP~~AI~~ 227 (366)
T 3mm5_B 161 -------------YFTDHKLPAMCRISLACCANMCGAVHASDIAIVGIHRTPPIPNDEAIRKTCEIPSTVAACPTGALKP 227 (366)
T ss_dssp -------------HHHSCCBSSCCCEEEESSTTCSSSGGGSSEEEEEECCSCCCCCHHHHHHHCCHHHHHHTCTTCCEEE
T ss_pred -------------HHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHCCCCCCCCCHHCCCCCCCEEE
T ss_conf -------------5103233545202244675565023233433322434304876122045566223122498555575
Q ss_pred ------------------------------CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCH-----HHHHHHH
Q ss_conf ------------------------------996105999982788876776665674443357-8997-----7899999
Q 005564 311 ------------------------------NGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG-YVPK-----EDILYAV 354 (691)
Q Consensus 311 ------------------------------~g~~~Gf~v~vGGg~G~~~~~~~t~p~~a~~lg-~v~~-----eev~~~~ 354 (691)
.+...|+.+++||++|.. ...|++++.+. |++. +++++++
T Consensus 228 ~~~~~~~~id~~~C~~Cg~C~~~CP~~Ai~~~~~~g~~i~vGgk~~~~----~~~~~lg~~~~~~~~~~~p~~~ev~~~v 303 (366)
T 3mm5_B 228 DMKNKTIKVDVEKCMYCGNCYTMCPGMPLFDPENDGAAIMVGGKLSEA----RRMPELSKVVVPWVPNEPPRWPTLVKYV 303 (366)
T ss_dssp ETTTTEEEECGGGCCCCCHHHHHCTTCCCCCTTTCEEEEEECCBCSCT----TSCCBCCEEEEEEEECCTTTCHHHHHHH
T ss_pred CCCCCEEEEEHHHCCCCCHHHHHCCHHHCCCCCCCCEEEEECCCCCCC----CCCCCCCCHHHCCCCCCCCCHHHHHHHH
T ss_conf 178975998514578854677769795565566776399976866666----6667403432235667885447899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 999999999389984102459999995131479999999
Q 005564 355 KAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ 393 (691)
Q Consensus 355 ~aii~~~rd~G~R~~R~~aRlk~li~~~G~e~f~e~v~~ 393 (691)
++++.+|+++|+ +++||+++|+|+|+++|++.++.
T Consensus 304 ~~i~~~y~~~g~----~~eR~~~~i~r~G~~~f~~~~~~ 338 (366)
T 3mm5_B 304 KQILEAWAANAN----KHERLIEWVDRIGWERFFELTGL 338 (366)
T ss_dssp HHHHHHHHHHCC----TTCCHHHHHHHHCHHHHHHHHTC
T ss_pred HHHHHHHHHHCC----CCCCHHHHHHHHCHHHHHHHHCC
T ss_conf 999999997687----65619999998599999999779
No 9
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=1.00 E-value=1 Score=309.57 Aligned_cols=256 Identities=15% Similarity=0.129 Sum_probs=219.6
Q ss_pred CCCCCEEECC---CCCEEEEEEECCCCCCHHHHHHHHHHHHHHC-C-EEEECCCCCEEECCCCCCCHHHHHHHHHHCCCC
Q ss_conf 5666648606---9918999981899877999999999999929-9-399667984898368957989999999988998
Q 005564 411 KSHLGWHEQG---DGGLFCGLHVDNGRIAGKMKKTLREIIEKYN-L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLL 485 (691)
Q Consensus 411 ~d~~G~~~q~---dG~~~v~i~ip~Grit~~ql~~LaeiAe~yg-~-~IrlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~ 485 (691)
..+.|++.|. ++.|++|+++|+|.+|++|++.|++||++|| . .+++|+||||||+||+.++++++++.|.+.|+.
T Consensus 136 lk~~G~y~r~~~~~~~~mvRvr~PgG~lt~~qlr~ladiA~kyg~~G~i~lTtRq~iql~gi~~e~l~~i~~~L~~~Gl~ 215 (608)
T 2akj_A 136 LKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGLESVGLT 215 (608)
T ss_dssp GGGGTEEECHHHHTTCEEEECCCGGGEEEHHHHHHHHHHHHTTGGGCCEEECTTSCEEEEEECGGGHHHHHHHHHTTTCC
T ss_pred HHHCCEEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCHHHHHHHHHHHHHCCCC
T ss_conf 72333055146778259999657886459999999999999859997299966863698078888899999999985998
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf 88888988652884599999930366787319999999999888--6077778742899975999998874451799934
Q 005564 486 LPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFE--KVGLKYNESVVIRVTGCPNGCARPYMAELGLVGD 563 (691)
Q Consensus 486 ~~~~~~~~~r~v~AC~G~~~C~~ai~dt~~~a~~l~~~l~~~~~--~~~l~~p~k~kI~iSGCpn~Ca~~~~aDIGlvG~ 563 (691)
+..++++.+||+++||++..|..++.|+.+++.+|.+++..... .....+|+||||+||||||+|+.++++||||++.
T Consensus 216 ~~~~~gd~~Rnv~~~p~~g~c~~~~~D~~~~a~~l~~~l~~~~~~~~~~~~LPrKfKiavsgc~~~c~~~~~~Dig~i~~ 295 (608)
T 2akj_A 216 SLQSGMDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDLYEHPHINDLAYMPA 295 (608)
T ss_dssp CTTCSSSSBCCCBCCTTTTTCTTCSSCCHHHHHHHHHHHTTTTTCCGGGSCCSSCBCEEECCCTTCTTCGGGSSEEEEEE
T ss_pred CCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEE
T ss_conf 77776778888572888556840255699999999998751035784212567634898636863543453661899979
Q ss_pred C---CCEEEEEECCCCC--CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHCHHHHHHHHHHH
Q ss_conf 0---8439999837789--8521114205899667999999999999995114---898377899852979999999867
Q 005564 564 G---PNSYQIWLGGTHN--QTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVEKW 635 (691)
Q Consensus 564 g---~~gy~I~iGG~~~--~~rlg~~l~~~V~~eei~~~ie~ll~~y~~~~~~---~~Erf~~~i~R~G~e~l~~~l~~~ 635 (691)
. ..||+||+||+.+ .++.+..+..+|+.+++++++++++++|++++.+ .++|++++++|+|++.|++.++++
T Consensus 296 ~~~g~~Gf~v~vGGg~g~~~~~~~~~l~~~v~~eev~~~~~ai~~~~~~~G~r~~R~~aRl~~li~~~G~e~f~~~v~~~ 375 (608)
T 2akj_A 296 TKNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKR 375 (608)
T ss_dssp ESSSSEEEEEEECCEECSSCEECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGCSHHHHHHHHCHHHHHHHHHTT
T ss_pred EECCCCEEEEEECCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 80895279999776557777632403036568999999999999999986772211211578898750627789999987
Q ss_pred C-CC-----C----C-----C------------------CCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 0-98-----3----1-----0------------------112355545778899999999988323
Q 005564 636 E-GP-----A----K-----A------------------TARYNLKLFADKETYEAVDELAKLQNK 668 (691)
Q Consensus 636 ~-~~-----~----~-----~------------------~~~~~~~L~~~~~~~~~l~~~a~~~~~ 668 (691)
+ +. . . . ...|.|+| ++++++.++++++.++.
T Consensus 376 ~~~~~l~~~~~~~~~~~~~~~~~~~Gv~~qk~~G~~~v~v~vp~Grl--t~~qLr~LadiAe~yg~ 439 (608)
T 2akj_A 376 MPEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRL--QADEMEELARIADVYGS 439 (608)
T ss_dssp STTSCCCCCCSCBCSCSSCCCCCCBEEEECSSTTEEEEEECCGGGEE--CHHHHHHHHHHHHHHSS
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCC--CHHHHHHHHHHHHHHCC
T ss_conf 41587776765555432100134445030575975999996777538--89999999999998499
No 10
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=1.00 E-value=1 Score=308.72 Aligned_cols=269 Identities=15% Similarity=0.119 Sum_probs=225.5
Q ss_pred CCCCCEEECC---CCCEEEEEEECCCCCCHHHHHHHHHHHHHHC-C-EEEECCCCCEEECCCCCCCHHHHHHHHHHCCCC
Q ss_conf 5666648606---9918999981899877999999999999929-9-399667984898368957989999999988998
Q 005564 411 KSHLGWHEQG---DGGLFCGLHVDNGRIAGKMKKTLREIIEKYN-L-NVRITPNQNIILCDIRKAWKRPITTALAQAGLL 485 (691)
Q Consensus 411 ~d~~G~~~q~---dG~~~v~i~ip~Grit~~ql~~LaeiAe~yg-~-~IrlT~~QnI~L~gI~~e~l~~i~~~L~~~Gl~ 485 (691)
..+.|++.|. ++.|++|+++|+|.+|++|++.|++||++|| . .+++|+||||||+||+.++++++++.|.+.|+.
T Consensus 119 ~k~~G~y~~~~~~~~~~mvRvr~PgG~lt~~qlr~ladia~~yg~~G~i~~TtRq~iql~gi~~~~l~~i~~~L~~~gl~ 198 (591)
T 3b0g_A 119 LKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLT 198 (591)
T ss_dssp GGGGTEEECTTTSTTEEEEECBCGGGEEEHHHHHHHHHHHHHTGGGCEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTCB
T ss_pred HHHCEEEEECCCCCCEEEEEECCCCCEECHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 62420477316778717998548981478999999999999868997199967863798068888999999999985998
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH----HHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 888889886528845999999303667873199999999998----8860777787428999759999988744517999
Q 005564 486 LPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAV----FEKVGLKYNESVVIRVTGCPNGCARPYMAELGLV 561 (691)
Q Consensus 486 ~~~~~~~~~r~v~AC~G~~~C~~ai~dt~~~a~~l~~~l~~~----~~~~~l~~p~k~kI~iSGCpn~Ca~~~~aDIGlv 561 (691)
+..++++.+||+++||++..|..++.|+.+++.+|.+++... +.. ..+|+||||+||||||+|+.++++||||+
T Consensus 199 ~~~~~gd~~Rnv~~~p~~g~c~~~~~D~~~~a~~l~~~l~~~~~~~~~~--~~LPrKfKiavsgc~~~c~~~~~~Dig~i 276 (591)
T 3b0g_A 199 SLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAV--SNLPRKWNPCVVGSHDLYEHPHINDLAYM 276 (591)
T ss_dssp CTTCSSSSBCCCBCCTTTTTCTTCSSCCHHHHHHHHHHHHTTTTCCGGG--SCCSSCBCEEECCCTTCTTCGGGSSEEEE
T ss_pred CCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCCEEEEECCCCCCCCCCCCCEEEEE
T ss_conf 7767667887847288855685214459999999999975203578322--35676548997247645544526648999
Q ss_pred EEC---CCEEEEEECCCCC--CCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHCHHHHHHHHH
Q ss_conf 340---8439999837789--8521114205899667999999999999995114---8983778998529799999998
Q 005564 562 GDG---PNSYQIWLGGTHN--QTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT---KDESFGDFTNRMGFEKLQELVE 633 (691)
Q Consensus 562 G~g---~~gy~I~iGG~~~--~~rlg~~l~~~V~~eei~~~ie~ll~~y~~~~~~---~~Erf~~~i~R~G~e~l~~~l~ 633 (691)
+.. ..||+||+||+.+ .++++..+..+|+.+++++++++++++|.+++.+ .++|++++++|+|++.|++.++
T Consensus 277 ~~~~~g~~Gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~~~~ai~~~~~~~G~r~~R~kaR~~~li~~~G~e~f~~~v~ 356 (591)
T 3b0g_A 277 PATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVE 356 (591)
T ss_dssp EEEETTEEEEEEEECCEECSSCEECCEEEEEEEEGGGHHHHHHHHHHHHHHHCCCSSGGGCSHHHHHHHHCHHHHHHHHH
T ss_pred EEECCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHH
T ss_conf 89818972489998565578886312240365689999999999999999966633212201899998615799999999
Q ss_pred HHC-C--C---C----C-----C------------------CCCCCCCCCCCHHHHHHHHHHHHHHCC-----------C
Q ss_conf 670-9--8---3----1-----0------------------112355545778899999999988323-----------1
Q 005564 634 KWE-G--P---A----K-----A------------------TARYNLKLFADKETYEAVDELAKLQNK-----------N 669 (691)
Q Consensus 634 ~~~-~--~---~----~-----~------------------~~~~~~~L~~~~~~~~~l~~~a~~~~~-----------~ 669 (691)
+++ + . . . . ...|.|++ ++++++.++++++..+. .
T Consensus 357 ~~~~~~~l~~~~~~~~~~~~~~~~~~~G~~~qk~~g~~~v~v~~p~Grl--t~~~Lr~LadiAe~yg~g~irlT~~QnI~ 434 (591)
T 3b0g_A 357 KRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRV--QADDMDELARLADEYGSGEIRLTVEQNII 434 (591)
T ss_dssp HTSGGGCCBCCCSCCSCCSSCCCCCCSEEEECSSTTEEEEEECCGGGEE--CHHHHHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCC--CHHHHHHHHHHHHHHCCCEEEECCCCCEE
T ss_conf 8743586787765465433433356665042376971899996777578--89999999999998399869987888647
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 12435999999999
Q 005564 670 AHQLAIEVIRNFVA 683 (691)
Q Consensus 670 ~~~~~~~~~~~~~~ 683 (691)
+..+..+.+...+.
T Consensus 435 l~~v~~e~l~~l~~ 448 (591)
T 3b0g_A 435 IPNIETSKIEALLK 448 (591)
T ss_dssp EEEEEGGGHHHHTT
T ss_pred ECCCCHHHHHHHHH
T ss_conf 67999889999999
Done!