RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 005564
(691 letters)
>gnl|CDD|177773 PLN00178, PLN00178, sulfite reductase.
Length = 623
Score = 1236 bits (3199), Expect = 0.0
Identities = 482/623 (77%), Positives = 529/623 (84%), Gaps = 3/623 (0%)
Query: 20 IRSFNGLKPSHSLSIRTNLRAFPVPYASRSSVVRAVSTPVKPETETKTETKRSKVEIIKE 79
S L + + T P S V+RAV+TPVK T KRSKVEIIKE
Sbjct: 4 SSSAVSLLLARQSAATTAFSTGPSRSRSGRLVIRAVATPVKKPT--TEPPKRSKVEIIKE 61
Query: 80 QSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGAKSYSFMLRTKNPCGKV 139
SNF+R+PLNEEL T+APN+NE A QLIKFHGSYQQ NR++RG K+Y FMLRTK P GKV
Sbjct: 62 NSNFLRHPLNEELATEAPNINEDAVQLIKFHGSYQQDNREKRGGKAYQFMLRTKQPAGKV 121
Query: 140 SNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGDLN 199
N+LYL MDDLAD+FGIGTLRLTTRQTFQLHGVLKKDLKTVM SII++MGSTLGACGD+N
Sbjct: 122 PNRLYLVMDDLADEFGIGTLRLTTRQTFQLHGVLKKDLKTVMSSIIKNMGSTLGACGDVN 181
Query: 200 RNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARND 259
RNVLAP AP RKDYLFAQ+ A+NIAALL PQSG YYD+WVDGE+IM+AEPPEV KARND
Sbjct: 182 RNVLAPAAPFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARND 241
Query: 260 NSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNL 319
NSHGTNF DSPEPIYGTQFLPRKFK+AVTVP DNSVDILTNDIGVVVVSDE GEPQG+N+
Sbjct: 242 NSHGTNFEDSPEPIYGTQFLPRKFKIAVTVPGDNSVDILTNDIGVVVVSDEAGEPQGYNI 301
Query: 320 YVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLI 379
YVGGGMGRTHR ETTFPRL + LGYVPKEDILYAVKAIV TQR+ GRRDDRK SRMKYL+
Sbjct: 302 YVGGGMGRTHRNETTFPRLADPLGYVPKEDILYAVKAIVATQRDYGRRDDRKQSRMKYLV 361
Query: 380 SSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGLFCGLHVDNGRIAGKM 439
SWGIEKFRSVVEQYYGKKFEPFR+LPEWEFKS+LGWHEQGDG LF G+HVDNGRI G+
Sbjct: 362 HSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKSYLGWHEQGDGKLFYGVHVDNGRIKGEA 421
Query: 440 KKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMA 499
KK LRE+IEKYNL VR+TPNQN+ILCDIR AWK PIT ALA AGLL P VDPLN TAMA
Sbjct: 422 KKALREVIEKYNLPVRLTPNQNLILCDIRPAWKEPITAALAAAGLLEPEEVDPLNRTAMA 481
Query: 500 CPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELG 559
CP+LPLCPLAITEAERGIPDILKR+RA+F KVGLKY+ESVV+R+TGCPNGCARPYMAELG
Sbjct: 482 CPALPLCPLAITEAERGIPDILKRVRAMFNKVGLKYDESVVVRMTGCPNGCARPYMAELG 541
Query: 560 LVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDF 619
VGDGPNSYQIWLGGT NQT LA FM+KVKV +LEKV EPLFY WKQ+RQ K ESFGDF
Sbjct: 542 FVGDGPNSYQIWLGGTPNQTRLAEPFMDKVKVDDLEKVLEPLFYMWKQQRQEK-ESFGDF 600
Query: 620 TNRMGFEKLQELVEKWEGPAKAT 642
TNR+GFE L+E +E + G A
Sbjct: 601 TNRVGFEALKEYIESYAGSVVAP 623
>gnl|CDD|131097 TIGR02042, sir, ferredoxin-sulfite reductase. Distantly related to
the iron-sulfur hemoprotein of sulfite reductase (NADPH)
found in Proteobacteria and Eubacteria, sulfite
reductase (ferredoxin) is a cyanobacterial and plant
monomeric enzyme that also catalyzes the reduction of
sulfite to sulfide [Central intermediary metabolism,
Sulfur metabolism].
Length = 577
Score = 1058 bits (2737), Expect = 0.0
Identities = 394/575 (68%), Positives = 474/575 (82%), Gaps = 11/575 (1%)
Query: 70 KRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLIKFHGSYQQYNRDERGA---KSY 126
KRSKVEI+KE+SNF+R PLNE+LL +A + NE A Q++KFHGSYQQ NRD RG K Y
Sbjct: 5 KRSKVEILKERSNFLREPLNEQLLEEATHFNEDAVQILKFHGSYQQDNRDNRGKGQEKDY 64
Query: 127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR 186
FMLRTKNP G V QLYLT+DDLAD++G GTLR TTRQTFQLHG+LKK+LKTV+ +I++
Sbjct: 65 QFMLRTKNPGGYVPPQLYLTLDDLADEYGNGTLRATTRQTFQLHGILKKNLKTVISTIVK 124
Query: 187 SMGSTLGACGDLNRNVLAPPAPLVRK-DYLFAQKTAENIAALLTPQSGFYYDMWVDGEQI 245
++GSTLGACGDLNRNV+APPAP ++ +Y FA++ A+NIA LLTPQSG YY++W+DGE++
Sbjct: 125 NLGSTLGACGDLNRNVMAPPAPFRKRPEYEFAREYADNIADLLTPQSGAYYELWLDGEKV 184
Query: 246 MTAEP-PEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGV 304
M+AEP PEVV ARNDNSHGTNF DSPEP+YGTQ+LPRKFK+AVTVP DNS+D+ T DIG+
Sbjct: 185 MSAEPDPEVVAARNDNSHGTNFADSPEPLYGTQYLPRKFKIAVTVPGDNSIDLFTQDIGL 244
Query: 305 VVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQREN 364
VVVS+E GE +GFN+YVGGGMGRTH E TF RL + LGYVPKEDI YAVKAIV TQR+
Sbjct: 245 VVVSNERGELEGFNIYVGGGMGRTHNKEETFARLADPLGYVPKEDIYYAVKAIVATQRDY 304
Query: 365 GRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGL 424
G RDDR+++RMKYLIS WGIEKFR VVEQY+GKK P R+LPE+E+K +LGWHEQGDG
Sbjct: 305 GDRDDRRHARMKYLISDWGIEKFREVVEQYFGKKIAPVRELPEFEYKDYLGWHEQGDGKW 364
Query: 425 FCGLHVDNGRIAGK----MKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALA 480
F GLH+D+GR+ +KK LREI+EKYNL VR+TPNQNIIL DI+ WKR ITT LA
Sbjct: 365 FLGLHIDSGRVKDDGNWQLKKALREIVEKYNLPVRLTPNQNIILYDIQPEWKRAITTVLA 424
Query: 481 QAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVV 540
Q G+L P +DPLN AMACP+LP C LAITE+ER IP ILKRIRA+ EKVGL +E V
Sbjct: 425 QRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRALLEKVGLP-DEHFV 483
Query: 541 IRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEP 600
+R+TGCPNGCARPYMAELG VG PNSYQ+WLGG+ NQT LAR F++K+K +LEKV EP
Sbjct: 484 VRMTGCPNGCARPYMAELGFVGSAPNSYQVWLGGSPNQTRLARPFIDKLKDGDLEKVLEP 543
Query: 601 LFYYWKQKRQTKDESFGDFTNRMGFEKLQELVEKW 635
LF ++KQ RQ+ ESFGDF +R+GF+ L+E VE +
Sbjct: 544 LFVHFKQSRQSG-ESFGDFCDRVGFDALREFVESY 577
>gnl|CDD|237402 PRK13504, PRK13504, sulfite reductase subunit beta; Provisional.
Length = 569
Score = 773 bits (1999), Expect = 0.0
Identities = 247/573 (43%), Positives = 344/573 (60%), Gaps = 32/573 (5%)
Query: 67 TETKRSKVEIIKEQSNFIRYPLNEELLTDA-PNVNESATQLIKFHGSYQQYNRDERGA-- 123
E K S VE IK +SN++R + EEL +E QL+KFHGSYQQ +RD R
Sbjct: 7 VEGKLSDVERIKLESNYLRGTIAEELNDGLTGGFSEDDFQLLKFHGSYQQDDRDIRAERA 66
Query: 124 -----KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLK 178
+Y FMLR + P G ++ Q +L +D LAD++G GTLRLTTRQTFQ HG+LKK+LK
Sbjct: 67 EQKLEPAYQFMLRCRLPGGVITPQQWLALDKLADEYGNGTLRLTTRQTFQFHGILKKNLK 126
Query: 179 TVMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDM 238
V+++I + TL ACGD+NRNV+ P P + + A + A+ I+ L P++ Y ++
Sbjct: 127 PVIQTINSVLLDTLAACGDVNRNVMCTPNPYESRLHAEAYEWAKKISDHLLPRTRAYAEI 186
Query: 239 WVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDIL 298
W+DGE++ T E EPIYG +LPRKFK+AV VP DN VD+
Sbjct: 187 WLDGEKVATFSGTEE-----------------EPIYGKTYLPRKFKIAVAVPPDNDVDVY 229
Query: 299 TNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIV 358
ND+G V ++ ENG+ GFN+ VGGGMG TH + T+PRL ++LGYVP ED+L +A+V
Sbjct: 230 ANDLGFVAIA-ENGKLVGFNVLVGGGMGMTHGDKETYPRLADELGYVPPEDVLDVAEAVV 288
Query: 359 VTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHE 418
TQR+ G R DRK +R+KY + G++ F++ VE+ GKK EP R LGW E
Sbjct: 289 TTQRDYGNRTDRKNARLKYTLERVGLDWFKAEVERRAGKKLEPARPYEFTGRGDRLGWVE 348
Query: 419 QGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRP 474
DG L ++NGRI +K LREI + + + R+T NQN+I+ ++ + K
Sbjct: 349 GIDGKWHLTLFIENGRIKDYPGRPLKTGLREIAKIHKGDFRLTANQNLIIANVPPSDKAK 408
Query: 475 ITTALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLK 534
I L + GL+ PL +MAC +LP C LA+ EAER +P + RI A+ K GL
Sbjct: 409 IEALLREYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLAKHGLS 468
Query: 535 YNESVVIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQEL 594
+E +VIR+TGCPNGCARPY+AE+GLVG P Y ++LGG+ N T L + + + +E+
Sbjct: 469 -DEHIVIRMTGCPNGCARPYLAEIGLVGKAPGRYNLYLGGSFNGTRLPKMYRENITEEEI 527
Query: 595 EKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEK 627
+PL W ++R+ E FGDF R G +
Sbjct: 528 LATLDPLLGRWAKEREP-GEGFGDFVIRAGIIR 559
>gnl|CDD|131096 TIGR02041, CysI, sulfite reductase (NADPH) hemoprotein,
beta-component. Sulfite reductase (NADPH) catalyzes a
six electron reduction of sulfite to sulfide in
prokaryotic organisms. It is a complex oligomeric enzyme
composed of two different peptides with a subunit
composition of alpha(8)-beta(4). The alpha component,
encoded by cysJ, is a flavoprotein containing both FMN
and FAD, while the beta component, encoded by cysI, is a
siroheme, iron-sulfur protein. In Salmonella typhimurium
and Escherichia coli, both the alpha and beta subunits
of sulfite reductase are located in a unidirectional
gene cluster along with phosphoadenosine phosphosulfate
reductase, which catalyzes a two step reduction of PAPS
to give free sulfite. In cyanobacteria and plant
species, sulfite reductase ferredoxin (EC 1.8.7.1)
catalyzes the reduction of sulfite to sulfide [Central
intermediary metabolism, Sulfur metabolism].
Length = 541
Score = 447 bits (1151), Expect = e-150
Identities = 216/566 (38%), Positives = 318/566 (56%), Gaps = 41/566 (7%)
Query: 75 EIIKEQSNFIRYPLNEELLTDAPN-VNESATQLIKFHGSYQQYNRDERGAKS-------Y 126
E IKE+SN++R L E L + QLIKFHG YQQ +RD R ++ Y
Sbjct: 1 ERIKEESNYLRGTLLESLADPLTGGFSGDDFQLIKFHGMYQQDDRDLRAERAEQKLEPAY 60
Query: 127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR 186
FMLR + P G ++ + +L +D A ++G G++RLTTRQTFQ HG+LK++LK V ++I
Sbjct: 61 QFMLRCRLPGGVITPKQWLAIDKFAREYGNGSIRLTTRQTFQFHGILKRNLKAVHQAIHS 120
Query: 187 SMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIM 246
+ ++ CGD+NRNVL P + + A + A+ I+ L P++ Y+++W+D +++
Sbjct: 121 AGLDSIATCGDVNRNVLCTSNPYESELHQEAYEWAKKISEHLLPRTRAYHEIWLDEKKVA 180
Query: 247 TAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVV 306
E EPIYG +LPRKFK V +P N VD+ ND+G V
Sbjct: 181 GTE-------------------EVEPIYGPTYLPRKFKTGVVIPPINDVDVYANDLGFVA 221
Query: 307 VSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGR 366
++D NG+ GFN+ +GGG+G TH + T+PRL ++G++P E L +AIV TQR+ G
Sbjct: 222 IAD-NGKLIGFNVLIGGGLGMTHGNKATYPRLANEIGFIPPEHTLAVAEAIVTTQRDFGN 280
Query: 367 RDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSH---LGWHEQGDGG 423
R DRK +R KY I G++ F++ VE+ G EP R + F GW + DG
Sbjct: 281 RTDRKNARTKYTIDRMGLDTFKAEVERRAGITLEPAR---PYVFTHRGDRYGWVKGIDGN 337
Query: 424 LFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTAL 479
L +++GRIA + LREI + + + RITPNQN+I+ ++ + K I
Sbjct: 338 WHLTLFIESGRIADYPDKPLMTGLREIAKIHKGDFRITPNQNLIIANVPEGGKAKIEALA 397
Query: 480 AQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESV 539
Q GL+ + L +MAC +LP CPLA+ EAER +PD + ++ + EK GL +E +
Sbjct: 398 RQYGLIDGKVT-ALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNIMEKHGLA-DEEI 455
Query: 540 VIRVTGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFE 599
V+R+TGCPNGC RPY+AE+GLVG P Y + LGG L R + + E+ +
Sbjct: 456 VLRMTGCPNGCGRPYLAEIGLVGKAPGRYNLMLGGNRRGQRLPRLYRENITEPEILAELD 515
Query: 600 PLFYYWKQKRQTKDESFGDFTNRMGF 625
L + +R+ E FGDF R G
Sbjct: 516 ELLGRYAAERKPG-EGFGDFLIRTGI 540
>gnl|CDD|223233 COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein)
[Inorganic ion transport and metabolism].
Length = 510
Score = 438 bits (1129), Expect = e-147
Identities = 193/561 (34%), Positives = 275/561 (49%), Gaps = 64/561 (11%)
Query: 67 TETKRSKVEIIKEQSNFIRYPLNEELLTDA-PNVNESATQL-IKFHGSYQQYNRDERGAK 124
E +K +SNF+R + ++L + E + +KF G Y Q
Sbjct: 2 APYDPLDNERLKAESNFLRGTIEDQLSDRLSGGLCEDDFRPLLKFDGLYLQ-------EP 54
Query: 125 SYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSI 184
++FMLR + P G +S + + D+A ++G GT+ LTTRQ Q HG+ KKD+ ++ +
Sbjct: 55 DHAFMLRVRIPGGILSPKQLRALADIARRYGRGTIELTTRQNIQFHGIRKKDVPEILAEL 114
Query: 185 IRSMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQ 244
T+ GD+ RNV P A A+ IA +W+DGE
Sbjct: 115 ASVGLHTIATAGDVARNVTGDP---------LAGLDADEIADPRPLAE--ILRIWLDGE- 162
Query: 245 IMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGV 304
G +LPRKFK+AV DN VD+L NDIG
Sbjct: 163 -----------------------------KGFAYLPRKFKIAVDGGPDNDVDVLINDIGF 193
Query: 305 VVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQREN 364
V + + +G GFN+ VGGG+GRTH T PRL E + ED+L V+AIV R+
Sbjct: 194 VAIKENDGLL-GFNVLVGGGLGRTHPK--TAPRLAEFVPP---EDVLEVVEAIVRVYRDY 247
Query: 365 GRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKSHLGWHEQGDGGL 424
GRR +RK +R+KYL+ + G+EKFR VE GK FEP R H+GW Q DG
Sbjct: 248 GRRANRKKARLKYLVEALGVEKFRREVEPRLGKPFEPARPREFTGNGDHIGWVPQKDGLW 307
Query: 425 FCGLHVDNGRI-AGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPITTALAQAG 483
GL V NGR+ A + E E +R+TPNQN+I+ ++ +A I LA G
Sbjct: 308 HLGLAVPNGRLKAEGLIPLATEAEEIGFGEIRLTPNQNLIIPNVPEAELEAILRILAALG 367
Query: 484 LLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRV 543
L+ L ++AC LP C LA+ E ER P I+ R E + K+ + + +
Sbjct: 368 LVTA--PSSLRRNSIACVGLPTCALALAETERDAPRIIAR----LEDLLDKHGLPITLHI 421
Query: 544 TGCPNGCARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFY 603
+GCPNGC RP++AE+GLVG YQ++LGG + T + + V +E+ + L
Sbjct: 422 SGCPNGCGRPHLAEIGLVGKAKGGYQVYLGGGADGTRGGKLYGENVPAEEILDAIDRLIG 481
Query: 604 YWKQKRQTKDESFGDFTNRMG 624
+ ++R ESFGDF R G
Sbjct: 482 RYAKERHE-GESFGDFVIRAG 501
Score = 46.6 bits (111), Expect = 4e-05
Identities = 58/276 (21%), Positives = 90/276 (32%), Gaps = 66/276 (23%)
Query: 398 KFEPFRQLPEWEFKSHLGWH----EQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKY-NL 452
L E +F+ L + ++ D + + G ++ K + L +I +Y
Sbjct: 28 SDRLSGGLCEDDFRPLLKFDGLYLQEPDHAFMLRVRIPGGILSPKQLRALADIARRYGRG 87
Query: 453 NVRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYVDPLNITAMACP----SLPLC-- 506
+ +T QNI IRK I LA GL + TA PL
Sbjct: 88 TIELTTRQNIQFHGIRKKDVPEILAELASVGL------HTIA-TAGDVARNVTGDPLAGL 140
Query: 507 -------PLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAELG 559
P + E R D K F + K+ I V G P+ + ++G
Sbjct: 141 DADEIADPRPLAEILRIWLDGEKG----FAYLPRKFK----IAVDGGPDNDVDVLINDIG 192
Query: 560 LVG----DGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKV-FEPLFYYWK-----QKR 609
V DG + + +GG L RT K + E V E + + +
Sbjct: 193 FVAIKENDGLLGFNVLVGG-----GLGRT-HPKTAPRLAEFVPPEDVLEVVEAIVRVYRD 246
Query: 610 QTKDESFGDFTNR-----------MGFEKLQELVEK 634
+G NR +G EK + VE
Sbjct: 247 ------YGRRANRKKARLKYLVEALGVEKFRREVEP 276
>gnl|CDD|236573 PRK09567, nirA, ferredoxin-nitrite reductase; Reviewed.
Length = 593
Score = 170 bits (432), Expect = 4e-45
Identities = 144/537 (26%), Positives = 227/537 (42%), Gaps = 95/537 (17%)
Query: 127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR 186
S+M R + P G +++ + + DLAD+ G G +TTR QL + + V+ ++
Sbjct: 116 SYMCRLRIPNGILTHWQFAGLADLADRHGGGYSHVTTRANLQLREIPPEHAVPVLEGLV- 174
Query: 187 SMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQI 245
+G + G+ D RNV P +G D +++
Sbjct: 175 DLGLTARGSGADNIRNVTGSPT------------------------AGI------DPQEL 204
Query: 246 MTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVA------VTVPTDNSVDILT 299
+ P AR + H N +YG LPRKF VA + D T
Sbjct: 205 LDTRP----YAREWHHHILNDRS----LYG---LPRKFNVAFDGGGRIATLED------T 247
Query: 300 NDIG--VVVVSDENGEPQG--FNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAV- 354
NDIG V V + G G F L +GG G H+ F R G + + + AV
Sbjct: 248 NDIGFQAVRVLEGAGVAPGVYFRLVLGGITG--HK---DFAR---DTGVLLRPEEATAVA 299
Query: 355 KAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKF-----EPFRQLPEWE 409
AIV ENG R +RK +R+KY++ +WG +KF VE+ G+ E P +
Sbjct: 300 DAIVRVFIENGDRTNRKKARLKYVLDAWGFDKFLEAVEEKLGRPLTRVPAEAVAPRPAAD 359
Query: 410 FKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIILCDI 467
+H+G H Q GL + G+ + GR+ + L +I +Y + +R+T QN+++ +
Sbjct: 360 RFAHVGVHPQKQPGLNWIGVVLPVGRLTTDQMRGLAKIAARYGDGEIRLTVWQNLLISGV 419
Query: 468 RKAWKRPITTALAQAGLLLPRYVDPLNITA--MACPSLPLCPLAITEAERGIPDILKRIR 525
A + A+ GL + +I A +AC C A + + L
Sbjct: 420 PDADVAAVEAAIEALGL----TTEASSIRAGLVACTGNAGCKFAAADTKG---HALAIAD 472
Query: 526 AVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG--------DGPNSYQIWLGGTH- 576
+V L ++ V I +TGC + CA+ Y+ ++GL+G D Y I +GG
Sbjct: 473 YCEPRVAL--DQPVNIHLTGCHHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIVVGGGFG 530
Query: 577 NQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVE 633
+ R VK ++ ++ E L + RQ DE+F FT R E L+ L E
Sbjct: 531 EDAAIGREVFRDVKAEDAPRLVERLLRAYLAHRQGPDETFQAFTRRHDPEALRSLAE 587
>gnl|CDD|216287 pfam01077, NIR_SIR, Nitrite and sulphite reductase 4Fe-4S domain.
Sulphite and nitrite reductases are vital in the
biosynthetic assimilation of sulphur and nitrogen,
respectfully. They are also both important for the
dissimilation of oxidized anions for energy
transduction.
Length = 154
Score = 141 bits (357), Expect = 3e-39
Identities = 60/176 (34%), Positives = 84/176 (47%), Gaps = 27/176 (15%)
Query: 224 IAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKF 283
P +G + +D + A E+ E YG LPRKF
Sbjct: 6 RNVTSCPGAGLCPEELIDTRPLAKALEDEL-----------------EDEYGFPDLPRKF 48
Query: 284 KVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG 343
K+AV+ ++ V NDIG + + GE GFN+ VGGG+GRT T G
Sbjct: 49 KIAVSGCPNDCVAAHANDIGFIGTEKDGGEI-GFNILVGGGLGRTPGAAATLAV-----G 102
Query: 344 YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKF 399
+VP+ED+L ++AI+ R R +RK R+KYLI G+EKFR VE+ G+K
Sbjct: 103 FVPEEDVLEVIEAILEVYR----RTNRKKERLKYLIERLGLEKFREEVEERLGQKL 154
Score = 63.0 bits (154), Expect = 1e-11
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 19/151 (12%)
Query: 495 ITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGL--KYNESVVIRVTGCPNGCAR 552
+CP LCP + + + + + L K+ I V+GCPN C
Sbjct: 6 RNVTSCPGAGLCPEELIDTRPLAKALEDELEDEYGFPDLPRKFK----IAVSGCPNDCVA 61
Query: 553 PYMAELGLVG---DGPNS-YQIWLGG----THN-QTTLARTFMNKVKVQELEKVFEPLFY 603
+ ++G +G DG + I +GG T TLA F V +++ +V E +
Sbjct: 62 AHANDIGFIGTEKDGGEIGFNILVGGGLGRTPGAAATLAVGF---VPEEDVLEVIEAILE 118
Query: 604 YWKQKRQTKDESFGDFTNRMGFEKLQELVEK 634
+++ + K E R+G EK +E VE+
Sbjct: 119 VYRRTNRKK-ERLKYLIERLGLEKFREEVEE 148
>gnl|CDD|236572 PRK09566, nirA, ferredoxin-nitrite reductase; Reviewed.
Length = 513
Score = 150 bits (382), Expect = 5e-39
Identities = 131/477 (27%), Positives = 208/477 (43%), Gaps = 97/477 (20%)
Query: 128 FMLRTKNPCGKVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR 186
FMLR + P G ++++ + + ++G G+ +TTRQ QL G+L +DL ++
Sbjct: 66 FMLRLRVPNGILTSEQLRVLASIVQRYGDDGSADITTRQNLQLRGILLEDLPEILNR--- 122
Query: 187 SMGSTLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIM 246
L A G L + QSG + G +
Sbjct: 123 -----LKAVG------------------------------LTSVQSGMDNVRNITGSPVA 147
Query: 247 TAEPPEVVKAR----------NDNSHGTNFPDSPEPIYGTQF--LPRKFKVAVTVPTDNS 294
+P E++ R +N G +PE F LPRKF +A+ DNS
Sbjct: 148 GIDPDELIDTRPLTQKLQDMLTNNGEG-----NPE------FSNLPRKFNIAIAGGRDNS 196
Query: 295 VDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL-GYVPKEDILYA 353
V NDI V GFN+ VGG + R P L +V ++++
Sbjct: 197 VHAEINDIAFVPA--YKDGVLGFNVLVGGFFS-SQRCAYAIP-----LNAWVKPDEVVRL 248
Query: 354 VKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEP--FRQLPEWEFK 411
+AI+ R+NG R +R+ R+ +LI WGIEKFR+ VE +G +WE +
Sbjct: 249 CRAILEVYRDNGLRANRQKGRLMWLIDEWGIEKFRAAVEAQFGPPLLTAAPGDEIDWEKR 308
Query: 412 SHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIILCDIRK 469
H+G H Q GL + GLHV GR+ + L + E Y + +R+T QN+I+ +I
Sbjct: 309 DHIGVHPQKQAGLNYVGLHVPVGRLYAEDMFELARLAEVYGSGEIRLTVEQNVIIPNIPD 368
Query: 470 AWKRPITTALAQAGLLLPRY-VDPLNITA--MACPSLPLCPLAITEA-ERGIPDILKRIR 525
+ T LA+ LL ++ ++P + ++C C A+ E R L +
Sbjct: 369 E---NLETFLAEP--LLQKFSLEPGPLARGLVSCTGNQYCNFALIETKNRA----LALAK 419
Query: 526 AVFEKVGLKYNESVVIRVTGCPNGCARPYMAELGLVG-----DGP--NSYQIWLGGT 575
+ ++ L + V I TGCPN C +P +A++GL+G +G I++GG
Sbjct: 420 ELDAELDLP--QPVRIHWTGCPNSCGQPQVADIGLMGTKARKNGKTVEGVDIYMGGK 474
>gnl|CDD|178050 PLN02431, PLN02431, ferredoxin--nitrite reductase.
Length = 587
Score = 110 bits (277), Expect = 3e-25
Identities = 151/612 (24%), Positives = 243/612 (39%), Gaps = 138/612 (22%)
Query: 25 GLKPSHSLSIRTNLRAFPVPYASRSSVVRAVSTPV------------------KPETETK 66
L S S + +RA A+ ++V + V K E
Sbjct: 15 TLLRSTSARRVSAVRAVEREVAAAATVSPPATAAVDADRLEPRVEERDGYWVLKEEFRKG 74
Query: 67 TETKRSKVEIIKEQSN-FIRYPLNEELLTDAPNVNESATQ----------LIKFHGSYQQ 115
+ KV++ KE F+ + E T +++S L FH Q
Sbjct: 75 I-NPQEKVKLEKEPMKLFMENGIEELAKTPFEEIDKSKLSKDDIDVRLKWLGLFHRRKHQ 133
Query: 116 YNRDERGAKSYSFMLRTKNPCGKV-SNQL-YLTMDDLADQFGI-GTLRLTTRQTFQLHGV 172
Y R FM+R K P G S Q YL + +++G G +TTRQ +Q+ GV
Sbjct: 134 YGR---------FMMRLKLPNGVTTSAQTRYLA--SVIEKYGEDGCADVTTRQNWQIRGV 182
Query: 173 LKKDLKTVMRSIIRSMG-STLGACGDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQ 231
+ D+ +++ + +G ++L + D RN + P +A
Sbjct: 183 VLPDVPAILKG-LEEVGLTSLQSGMDNVRNPVGNP-----------------LAG----- 219
Query: 232 SGFYYDMWVDGEQIMTAEPPEVVKARND----NSHG----TNFPDSPEPIYGTQFLPRKF 283
+D +I+ P +D N G TN P RK+
Sbjct: 220 --------IDPHEIVDTRP--YTNLLSDYITNNGRGNPEITNLP-------------RKW 256
Query: 284 KVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLG 343
V V D ND+ + + ++G GFNL VGG R P L
Sbjct: 257 NVCVVGSHDLFEHPHINDLAYMPAT-KDGR-FGFNLLVGGFFS-PKRCAEAIP-LD---A 309
Query: 344 YVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYY-GKKFEPF 402
+VP +D++ KAI+ R+ G R +R+ +RM +LI G+E FRS VE+ + E
Sbjct: 310 WVPADDVVPLCKAILEAFRDLGTRGNRQKTRMMWLIDELGVEGFRSEVEKRMPNGELERA 369
Query: 403 RQL----PEWEFKSHLGWHEQGDGGL-FCGLHVDNGRIAGKMKKTLREIIEKY-NLNVRI 456
+WE + +LG H Q GL + GLHV GR+ L + ++Y + +R+
Sbjct: 370 ASEDLVDKKWERRDYLGVHPQKQEGLSYVGLHVPVGRLQAADMDELARLADEYGSGELRL 429
Query: 457 TPNQNIILCDIRKAWKRPITTALAQAGLLLPRY-VDPLNITA--MACPSLPLCPLAITEA 513
T QNII+ ++ + + LA+ LL R+ +P + +AC C AI E
Sbjct: 430 TVEQNIIIPNVPNS---KVEALLAEP--LLQRFSPNPGLLLKGLVACTGNQFCGQAIIET 484
Query: 514 ERGIPDILKRIRAVFEKVG--LKYNESVVIRVTGCPNGCARPYMAELGLVG------DGP 565
+ R V E++ ++ V + TGCPN C + +A++G +G +G
Sbjct: 485 KA-------RALKVTEELERLVEVPRPVRMHWTGCPNSCGQVQVADIGFMGCMARDENGK 537
Query: 566 --NSYQIWLGGT 575
I++GG
Sbjct: 538 AVEGADIFVGGR 549
>gnl|CDD|233866 TIGR02435, CobG, precorrin-3B synthase. An iron-sulfur protein. An
oxygen atom from dioxygen is incorporated into the
macrocycle at C-20. In the aerobic cobalamin biosythesis
pathway, four enzymes are involved in the conversion of
precorrin-3A to precorrin-6A. The first of the four
steps is carried out by EC 1.14.13.83, precorrin-3B
synthase (CobG), yielding precorrin-3B as the product.
This is followed by three methylation reactions, which
introduce a methyl group at C-17 (CobJ; EC 2.1.1.131),
C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152)
of the macrocycle, giving rise to precorrin-4,
precorrin-5 and precorrin-6A, respectively [Biosynthesis
of cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 390
Score = 87.5 bits (217), Expect = 2e-18
Identities = 87/452 (19%), Positives = 152/452 (33%), Gaps = 93/452 (20%)
Query: 127 SFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIR 186
++R + P G+++ + + DLA++ G G + +T R QL G+ + +
Sbjct: 17 GLLVRVRLPGGRLTPAQAIGLADLAERLGNGIIEVTARGNLQLRGL--TADHDALSQALL 74
Query: 187 SMGSTLGACG---DLNRNVLAPPAPLVRKDYLF-AQKTAENIAALLTPQSGFYYDMWVDG 242
+ G LGA G D RN+ P + + + A + A L +
Sbjct: 75 AAG--LGAAGAAADDIRNIEVSPLAGIDPGEIADTRPLAAELRAALENERAL-------- 124
Query: 243 EQIMTAEPPEVVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDI 302
LP KF VA+ + T D+
Sbjct: 125 ----------------------------------LELPPKFSVAIDGGGRLVLLGDTADV 150
Query: 303 GVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQR 362
+ ++ G +L G+ + R L V + + A++
Sbjct: 151 RLQALTTGAGVAWVVSL---AGISTSARS----------LVTVAPDAAVPVAVALLRVFV 197
Query: 363 ENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKS-----HLGWH 417
E G +R + L ++ +VE + P E + LG H
Sbjct: 198 ELGGA-----ARGRDLDDAFLFALALELVED--SRPLIPDAAEGEAPRPAVDAAAPLGLH 250
Query: 418 EQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLN-VRITPNQNIILCDIRKAWKRPIT 476
QGD G+ G + G++ + L ++ + +R+TP + +++ +
Sbjct: 251 PQGDAGVTLGAGLALGQLTAAQLRGLAQLAQALGDGDLRLTPWRALLVLGLPPERADAAQ 310
Query: 477 TALAQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYN 536
ALA GL+ DP AC P C A+ + R + L Y
Sbjct: 311 RALAALGLVTSAS-DPRARII-ACTGAPGCASALADT-RADAEALAA-----------YC 356
Query: 537 ESVV---IRVTGCPNGCARPYMAELGLVGDGP 565
E + ++GC GCA P A + LV G
Sbjct: 357 EPTAPITVHLSGCAKGCAHPGPAAITLVAAGA 388
>gnl|CDD|217572 pfam03460, NIR_SIR_ferr, Nitrite/Sulfite reductase ferredoxin-like
half domain. Sulfite and Nitrite reductases are key to
both biosynthetic assimilation of sulfur and nitrogen
and dissimilation of oxidized anions for energy
transduction. Two copies of this repeat are found in
Nitrite and Sulfite reductases and form a single
structural domain.
Length = 67
Score = 65.6 bits (161), Expect = 1e-13
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 124 KSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMR 182
K +M+R + P G+++ + + D+A+++G G +RLTTRQ +LHGV ++DL ++
Sbjct: 4 KDGDYMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEEDLPALLE 62
Score = 61.8 bits (151), Expect = 3e-12
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 417 HEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIILCDIRKA 470
H Q DG + V GR+ + + L +I EKY + +R+T QN+ L + +
Sbjct: 1 HPQKDGDYMVRVRVPGGRLTAEQLRALADIAEKYGDGEIRLTTRQNLELHGVPEE 55
>gnl|CDD|225131 COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin),
alpha and beta subunits [Energy production and
conversion].
Length = 317
Score = 56.2 bits (136), Expect = 2e-08
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 432 NGRIAGKMKKTLREIIEKYNLN-VRITPNQNIILCDIRKAWKRPITTALAQAGLLLPRYV 490
G ++ + + + +I EKY + IT Q + + I + L + GL
Sbjct: 39 GGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREIGLP-VGST 97
Query: 491 DPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGC 550
P +ACP C A+ + ++ +R+ F +V + Y I V+GCPN C
Sbjct: 98 GPAVRAIVACPGPRTCETALYDT----TELARRLEEEFLEVPVPYK--FKIAVSGCPNDC 151
Query: 551 ARPYMAELGLVG 562
RP ++G+VG
Sbjct: 152 TRPQAHDIGIVG 163
Score = 55.4 bits (134), Expect = 3e-08
Identities = 62/286 (21%), Positives = 113/286 (39%), Gaps = 32/286 (11%)
Query: 120 ERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKT 179
+R +Y+ +RT P G +S + + D+A+++G G + +T+RQ ++ G+ +D
Sbjct: 24 KRRDGTYTVRVRTP-PGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADD 82
Query: 180 VMRSIIRSMGSTLGACGDLNRNVLAPPAPLVRKDYL-----FAQKTAENIAALLTPQSGF 234
V+ +R +G +G+ G R ++A P P + L A++ E + P +
Sbjct: 83 VVE-ELREIGLPVGSTGPAVRAIVACPGPRTCETALYDTTELARRLEEEFLEVPVP---Y 138
Query: 235 YYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPD-SPEPIYGTQFLPRKFKV-AVTVPTD 292
+ + V G P +A + G P E G + A+T
Sbjct: 139 KFKIAVSGCPNDCTRP----QAHDIGIVGVWKPKVDEELCRGCGKCVKVCPTGAITWDGK 194
Query: 293 NSVDILTNDIG------VVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQL-GYV 345
+ IG + GE G + VGG GR R+G+ L
Sbjct: 195 KLKIDGSKCIGCGKCIRACPKAAFRGEKVGIAILVGGKTGR------ELGRVGKPLVPVE 248
Query: 346 PKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVV 391
+++I+ +K + RE ++ R+ I G EKF +
Sbjct: 249 DEDEIIDIIKKTIEVWREYA---EKPGERIGDFIDRVGFEKFLEEI 291
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 49.2 bits (118), Expect = 6e-06
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 279 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRL 338
P K K+AV+ N + D+G++ +G+NLYVGG G PR
Sbjct: 656 TPHKVKMAVSGCPRNCAEAGIKDVGIIGTE------KGWNLYVGGNGG-------MKPRH 702
Query: 339 GEQLGYVPKED-ILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVV 391
+ L V E+ +L + A + RE +R + L G+E + VV
Sbjct: 703 ADLLAKVLTEEEVLEYIDAFLQYYRETADYLERTAPWLDRL----GLEHIKEVV 752
Score = 43.5 bits (103), Expect = 3e-04
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 38/211 (18%)
Query: 442 TLR---EIIEKYNL-NVRITPNQNIILCDIRK-----AWKRPITTALAQAGLLLPRYVDP 492
LR ++ EKYNL V+IT Q I L ++K W + G L
Sbjct: 568 ELRAIADVAEKYNLPTVKITGGQRIDLLGVKKEDLPAIWADLGMASGHAYGKALR----- 622
Query: 493 LNITAMACPSLPLCPLAITEAERGIPDILK---RIRAVFEKVGLKYNESVVIRVTGCPNG 549
T C C G D + R+ +E GL+ V + V+GCP
Sbjct: 623 ---TVKTCVGSTFC-------RFGTQDSVGLGIRLEKRYE--GLRTPHKVKMAVSGCPRN 670
Query: 550 CARPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQE--LEKVFEPLFYYWKQ 607
CA + ++G++G + +++GG + KV +E LE + L YY
Sbjct: 671 CAEAGIKDVGIIGT-EKGWNLYVGGNGGMKPRHADLLAKVLTEEEVLEYIDAFLQYY--- 726
Query: 608 KRQTKD--ESFGDFTNRMGFEKLQELVEKWE 636
R+T D E + +R+G E ++E+V
Sbjct: 727 -RETADYLERTAPWLDRLGLEHIKEVVLDDP 756
>gnl|CDD|131958 TIGR02912, sulfite_red_C, sulfite reductase, subunit C. Members of
this protein family include the C subunit, one of three
subunits, of the anaerobic sulfite reductase of
Salmonella, and close homologs from various Clostridum
species, where the three-gene neighborhood is preserved.
Two such gene clusters are found in Clostridium
perfringens, but it may be that these sets of genes
correspond to the distinct assimilatory and
dissimilatory forms as seen in Clostridium pasteurianum.
Note that any one of these enzymes may have secondary
substates such as NH2OH, SeO3(2-), and SO3(2-).
Heterologous expression of the anaerobic sulfite
reductase of Salmonella confers on Escherichia coli the
ability to produce hydrogen sulfide gas from sulfite
[Central intermediary metabolism, Sulfur metabolism].
Length = 314
Score = 37.9 bits (88), Expect = 0.013
Identities = 44/147 (29%), Positives = 57/147 (38%), Gaps = 27/147 (18%)
Query: 430 VDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIILCDIR-------KAWKRPITTAL-- 479
V G + K L+ I E Y N V IT Q + IR +PI L
Sbjct: 27 VPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEVNKALQPIIEGLEI 86
Query: 480 ----AQAGLLLPRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKY 535
Q G NITA C +CP A + + KRI EK
Sbjct: 87 NQEDVQKGYSA---SGTRNITA--CIGNRVCPFANYDTTK----FAKRI----EKAVFPN 133
Query: 536 NESVVIRVTGCPNGCARPYMAELGLVG 562
+ V I +TGCPN CA+ M + G++G
Sbjct: 134 DYHVKIALTGCPNDCAKARMHDFGIIG 160
Score = 34.8 bits (80), Expect = 0.11
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 129 MLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTV 180
+R + P G + + + ++A+ +G G + +TTRQ F++ G+ +D+ V
Sbjct: 22 AIRVRVPGGILPAKYLSVLQNIAETYGNGKVHITTRQGFEIPGIRFEDIDEV 73
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 36.3 bits (84), Expect = 0.061
Identities = 46/210 (21%), Positives = 78/210 (37%), Gaps = 28/210 (13%)
Query: 433 GRIAGKMKKTLREIIEKYNLN-VRITPNQNIILCDIRKA-----WKRPITTALAQAGLLL 486
GR + +T+ I E Y++ V+IT Q + L +K WK A
Sbjct: 563 GRTNPEQLRTIANIAEAYSIPYVKITGGQRLDLFGAKKDDLPNIWKDLKMPGYEHA---- 618
Query: 487 PRYVDPLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGC 546
Y L T C C ++ + + +R GL+ + I V+GC
Sbjct: 619 --YGKALR-TVKTCVGSQWCRYGNQDSVQLAIQLERRYE------GLRTPHKIKIGVSGC 669
Query: 547 PNGCARPYMAELGLVG--DGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYY 604
CA ++G++ G N Y GGTH + + L + Y
Sbjct: 670 ERECAEAAGKDVGVIATEKGWNLYVGGNGGTHPRH--GDLLAVDEDEETLIGYIDRFLQY 727
Query: 605 WKQKRQTKD--ESFGDFTNRMGFEKLQELV 632
+ R+T D E + R+G + ++E++
Sbjct: 728 Y---RETADYLERTAPWLERLGIDHVREVL 754
Score = 31.7 bits (72), Expect = 1.6
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 18/114 (15%)
Query: 279 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRL 338
P K K+ V+ + D+GV+ +G+NLYVGG G T PR
Sbjct: 658 TPHKIKIGVSGCERECAEAAGKDVGVI------ATEKGWNLYVGGNGG-------THPRH 704
Query: 339 GEQLGYV-PKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVV 391
G+ L +E ++ + + RE R + GI+ R V+
Sbjct: 705 GDLLAVDEDEETLIGYIDRFLQYYRET----ADYLERTAPWLERLGIDHVREVL 754
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 32.2 bits (74), Expect = 0.94
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 60 KPETETKTETKRSKVEIIKEQSNFIRYP 87
K E + E R + EI+K+ S+ I YP
Sbjct: 179 KEEEDEFLEEWRLR-EIVKKYSDHIAYP 205
>gnl|CDD|201775 pfam01402, RHH_1, Ribbon-helix-helix protein, copG family. The
structure of this protein repressor, which is the
shortest reported to date and the first isolated from a
plasmid, has a homodimeric ribbon-helix-helix
arrangement. The helix-turn-helix-like structure is
involved in dimerisation and not DNA binding as might
have been expected.
Length = 39
Score = 28.1 bits (64), Expect = 1.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 652 DKETYEAVDELAKLQNKNAHQLAIEVIRNFV 682
D+E E +DELAK + + +L E +R ++
Sbjct: 7 DEELLERLDELAKKRGLSRSELIREALREYL 37
>gnl|CDD|129553 TIGR00461, gcvP, glycine dehydrogenase (decarboxylating). This
apparently ubiquitous enzyme is found in bacterial,
mammalian and plant sources. The enzyme catalyzes the
reaction: GLYCINE + LIPOYLPROTEIN =
S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of
the glycine decarboxylase multienzyme complex (GDC)
consisting of four proteins P, H, L and T. Active site
in E.coli is located as the (K) residues at position 713
of the SEED alignment [Energy metabolism, Amino acids
and amines].
Length = 939
Score = 31.8 bits (72), Expect = 1.4
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 621 NRMGFEKLQELVEKWEGPAKATARYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRN 680
MG+ L L+E+ P R L+L A + YEA+ L K+ +KN ++
Sbjct: 15 KTMGYSDLNALIEQLVPPNILKRR-PLQLEAPSKEYEALAHLKKIASKN------HKFKS 67
Query: 681 FVASQQNGKGF 691
++ G G+
Sbjct: 68 YI-----GMGY 73
>gnl|CDD|99911 cd05569, PTS_IIB_fructose, PTS_IIB_fructose: subunit IIB of enzyme
II (EII) of the fructose-specific
phosphoenolpyruvate:carbohydrate phosphotransferase
system (PTS). In this system, EII (also referred to as
FruAB) is a fructose-specific permease made up of two
proteins (FruA and FruB) each containing 3 domains. The
FruA protein contains two tandem nonidentical IIB
domains and a C-terminal IIC transmembrane domain. Both
IIB domains of FruA are included in this alignment. The
FruB protein (also referred to as diphosphoryl transfer
protein) contains a IIA domain, a domain of unknown
function, and an Hpr-like domain called FPr
(fructose-inducible HPr). This familiy also includes the
IIB domains of several fructose-like PTS permeases
including the Frv permease encoded by the frvABXR
operon, the Frw permease encoded by the frwACBD operon,
the Frx permease encoded by the hrsA gene, and the Fry
permease encoded by the fryABC (ypdDGH) operon. FruAB
takes up exogenous fructose, releasing the 1-phosphate
ester in to the cytoplasm in preparation for metabolism
primarily via glycolysis. The IIB domain fold includes a
central four-stranded parallel open twisted beta-sheet
flanked by alpha-helices on both sides. The seven major
PTS systems with this IIB fold include fructose,
chitobiose/lichenan, ascorbate, lactose, galactitol,
mannitol, and a sensory system with similarity to the
bacterial bgl system.
Length = 96
Score = 29.0 bits (66), Expect = 2.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 540 VIRVTGCPNGCARPYMA 556
++ VT CP G A YMA
Sbjct: 1 IVAVTACPTGIAHTYMA 17
>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 113
Score = 29.0 bits (66), Expect = 3.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 287 VTVPTDNSV----DILT-NDIGVVVVSDENGEPQG 316
+TV D +V ++ +IG VVV D+ G G
Sbjct: 4 ITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVG 38
>gnl|CDD|227628 COG5316, COG5316, Uncharacterized conserved protein [Function
unknown].
Length = 421
Score = 30.6 bits (69), Expect = 3.4
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 339 GEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQYYGKK 398
G +LG VP +A++V +R + R+Y LI++ + E YG
Sbjct: 323 GFELGGVPGAAFDVTARALLVEERYVSKALGRRYLYEYALINAKTDAVTVEIRELVYGDV 382
Query: 399 F 399
Sbjct: 383 V 383
>gnl|CDD|233704 TIGR02064, dsrA, sulfite reductase, dissimilatory-type alpha
subunit. Dissimilatory sulfite reductase catalyzes the
six-electron reduction of sulfite to sulfide, as the
terminal reaction in dissimilatory sulfate reduction. It
remains unclear however, whether trithionate and
thiosulfate serve as intermediate compounds to sulfide,
or as end products of sulfite reduction. Sulfite
reductase is a multisubunit enzyme composed of dimers of
either alpha/beta or alpha/beta/gamma subunits, each
containing a siroheme and iron sulfur cluster prosthetic
center. Found in sulfate-reducing bacteria, these genes
are commonly located in an unidirectional gene cluster.
This model describes the alpha subunit of sulfite
reductase [Central intermediary metabolism, Sulfur
metabolism].
Length = 402
Score = 30.2 bits (68), Expect = 3.5
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 496 TAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYM 555
T +C C A + + ++ + + Y + +GCPN C
Sbjct: 156 TPESCVGPARCEFACYDTLKACYELTMEYQDELHRPAFPYK--FKFKFSGCPNDCVAAIA 213
Query: 556 -AELGLVG 562
++ ++G
Sbjct: 214 RSDFAVIG 221
>gnl|CDD|226972 COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal
domain [General function prediction only].
Length = 411
Score = 30.2 bits (68), Expect = 3.9
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 508 LAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGC 550
L + + + + +K +R F+ I V CP GC
Sbjct: 301 LGGSSRKIAVVEGVKNVRNFFKSTTADEYRYDFIEVMACPGGC 343
>gnl|CDD|225947 COG3413, COG3413, Predicted DNA binding protein [General function
prediction only].
Length = 215
Score = 29.3 bits (66), Expect = 4.8
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 146 TMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMG 189
++ DLA + GI ++ T H L++ + ++ + +G
Sbjct: 180 SLKDLAKELGI------SKSTLSEH--LRRAERKLIEAYFDELG 215
>gnl|CDD|131121 TIGR02066, dsrB, sulfite reductase, dissimilatory-type beta
subunit. Dissimilatory sulfite reductase catalyzes the
six-electron reduction of sulfite to sulfide, as the
terminal reaction in dissimilatory sulfate reduction. It
remains unclear however, whether trithionate and
thiosulfate serve as intermediate compounds to sulfide,
or as end products of sulfite reduction. Sulfite
reductase is a multisubunit enzyme composed of dimers of
either alpha/beta or alpha/beta/gamma subunits, each
containing a siroheme and iron sulfur cluster prosthetic
center. Found in sulfate-reducing bacteria, these genes
are commonly located in an unidirectional gene cluster.
This model describes the beta subunit of sulfite
reductase [Central intermediary metabolism, Sulfur
metabolism].
Length = 341
Score = 29.8 bits (67), Expect = 5.2
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 13/109 (11%)
Query: 536 NESVVIRVTGCPNGCARPY-MAELGLVGDGPNS-YQIWLGGTHNQT----TLARTFM--- 586
N+S+ + V C C Y M + D N IW+GG + L++ +
Sbjct: 206 NKSLEVDVEKCIY-CGNCYTMCPAMPIFDPENDGAAIWVGGKLSNARVMPELSKVVVPWI 264
Query: 587 --NKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEKLQELVE 633
N + EL + + WK + K E ++ R+G+E+ ELV
Sbjct: 265 PNNPPRWPELVAYVKKILEAWKANAK-KHERLIEWVERIGWERFFELVG 312
>gnl|CDD|235442 PRK05389, truB, tRNA pseudouridine synthase B; Provisional.
Length = 305
Score = 29.5 bits (67), Expect = 5.8
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 179 TVMRSIIRSMGSTLGACG---DLNRNVLAP--PAPLVRKDYLFAQKTAENIAALLTP 230
T +RS+ R +G LG G L R + P + + L A + ALL P
Sbjct: 180 TYVRSLARDLGRALGCYGHIAALRRTRVGPFTEEDAITLEKLEALARFAALDALLLP 236
>gnl|CDD|224362 COG1445, FrwB, Phosphotransferase system fructose-specific
component IIB [Carbohydrate transport and metabolism].
Length = 122
Score = 28.4 bits (64), Expect = 6.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 540 VIRVTGCPNGCARPYMAE 557
++ VT CP G A YMA
Sbjct: 4 IVAVTACPTGIAHTYMAA 21
>gnl|CDD|224774 COG1861, SpsF, Spore coat polysaccharide biosynthesis protein F,
CMP-KDO synthetase homolog [Cell envelope biogenesis,
outer membrane].
Length = 241
Score = 29.3 bits (66), Expect = 6.3
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 519 DILKRIRAVFEKVGLKYNESVVIRVTG-CP 547
D+L+R F Y+ VV+RVTG P
Sbjct: 78 DVLQR----FIIAIKAYSADVVVRVTGDNP 103
>gnl|CDD|191840 pfam07749, ERp29, Endoplasmic reticulum protein ERp29, C-terminal
domain. ERp29 is a ubiquitously expressed endoplasmic
reticulum protein found in mammals. ERp29 is comprised
of two domains. This domain, the C-terminal domain, has
an all helical fold. ERp29 is thought to form part of
the thyroglobulin folding complex.
Length = 95
Score = 27.6 bits (62), Expect = 7.6
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 625 FEKLQELVEKWEGPAKATARYNLKLF---ADKETYEAVDELAKLQN 667
+++E V K + A A+Y +K+ +K ELA+L+
Sbjct: 25 LSEVEEAVAKLKDSAAKYAKYYVKVMEKILEKGEDYVAKELARLER 70
>gnl|CDD|116198 pfam07579, DUF1548, Domain of Unknown Function (DUF1548). This
family appears to be found only in a small family of
Chlamydia proteins.
Length = 135
Score = 28.1 bits (63), Expect = 7.8
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 142 QLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTL 192
+L L D L TLR T+R Q H L LK + R+ GS L
Sbjct: 19 ELGLNTDHLNRNLDALTLRQTSRLYPQKHE-LYDRLKKRFLNAYRNSGSNL 68
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 29.1 bits (66), Expect = 8.7
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 434 RIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWK-RPITTALAQAGLL-LPRYVD 491
+ + LRE+ +Y L + +I ++++ ++ R I AL + G+L LP +
Sbjct: 311 EKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRARDIVRALREEGVLVLPAGPN 370
Query: 492 PLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVG 532
+ LP PL ITE E I + L +
Sbjct: 371 VIRF-------LP--PLVITEEE--IDEALDALERALAAAS 400
>gnl|CDD|233903 TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, group A. This model
describes iron-only hydrogenases of anaerobic and
microaerophilic bacteria and protozoa. This model is
narrower, and covers a longer stretch of sequence, than
pfam02906. This family represents a division among
families that belong to pfam02906, which also includes
proteins such as nuclear prelamin A recognition factor
in animals. Note that this family shows some
heterogeneity in terms of periplasmic, cytosolic, or
hydrogenosome location, NAD or NADP dependence, and
overal protein protein length.
Length = 374
Score = 29.2 bits (66), Expect = 8.9
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 521 LKRIRAVFEKVGLKYNESVVIRVTGCPNGC 550
L R + + V + I V CP GC
Sbjct: 336 LGNARKLLDDVKAGEADYHFIEVMACPGGC 365
>gnl|CDD|182066 PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific
transporter subunit IIABC; Provisional.
Length = 631
Score = 28.9 bits (65), Expect = 10.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 536 NESVVIRVTGCPNGCARPYMA 556
N ++ VT CP G A YMA
Sbjct: 162 NAPTIVCVTACPAGIAHTYMA 182
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,477,370
Number of extensions: 3526414
Number of successful extensions: 3522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3464
Number of HSP's successfully gapped: 53
Length of query: 691
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 587
Effective length of database: 6,324,786
Effective search space: 3712649382
Effective search space used: 3712649382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)