RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 005564
(691 letters)
>d1aopa3 d.134.1.1 (A:149-345) Sulfite reductase hemoprotein
(SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}
Length = 197
Score = 202 bits (514), Expect = 2e-61
Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 24/216 (11%)
Query: 197 DLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKA 256
D+NRNVL P + + A + A+ I+ L P++ Y ++W+D E++ T +
Sbjct: 2 DMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDE------ 55
Query: 257 RNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQG 316
EPI G +LPRKFK V +P N +D+ ND+ V +++
Sbjct: 56 --------------EPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVG- 100
Query: 317 FNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMK 376
FNL VGGG+ H + T+ R + GY+P E L +A+V TQR+ G R DRK ++ K
Sbjct: 101 FNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTK 160
Query: 377 YLISSWGIEKFRSVVEQYYGKKFEPFRQLPEWEFKS 412
Y + G+E F++ VE+ G KFEP R +EF
Sbjct: 161 YTLERVGVETFKAEVERRAGIKFEPIR---PYEFTG 193
Score = 34.9 bits (80), Expect = 0.018
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 14/118 (11%)
Query: 541 IRVTGCPNGCARPYMAELGLV----GDGPNSYQIWLG-GTHNQTTLARTFMNKVKV---- 591
V P + ++ V + + +G G + +T+
Sbjct: 70 TTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYL 129
Query: 592 --QELEKVFEPLFYYWKQ---KRQTKDESFGDFTNRMGFEKLQELVEKWEGPAKATAR 644
+ V E + + + K+ R+G E + VE+ G R
Sbjct: 130 PLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIR 187
>d1aopa4 d.134.1.1 (A:426-570) Sulfite reductase hemoprotein
(SiRHP), domains 2 and 4 {Escherichia coli [TaxId: 562]}
Length = 145
Score = 132 bits (334), Expect = 6e-37
Identities = 57/147 (38%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 492 PLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCA 551
P +MAC S P CPLA+ EAER +P + I + K G+ +E +V+RVTGCPNGC
Sbjct: 1 PQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVS-DEHIVMRVTGCPNGCG 59
Query: 552 RPYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQT 611
R +AE+GLVG P Y + LGG T + R + + E+ + L W ++R+
Sbjct: 60 RAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKERE- 118
Query: 612 KDESFGDFTNRMGFEK--LQELVEKWE 636
E FGDFT R G + L + W+
Sbjct: 119 AGEGFGDFTVRAGIIRPVLDPARDLWD 145
>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 171
Score = 112 bits (282), Expect = 2e-29
Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 7/142 (4%)
Query: 266 FPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGM 325
+ LPRK+ V D ND+ + + GFNL VGG
Sbjct: 34 VTANSRGNLSITNLPRKWNPCVIGSHDLYEHPHINDLAYMPATKNGKF--GFNLLVGGFF 91
Query: 326 GRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIE 385
E +V ED++ KA++ R+ G R +R+ RM +LI G+E
Sbjct: 92 SIKRCEEAIPLD-----AWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGME 146
Query: 386 KFRSVVEQYYGKKFEPFRQLPE 407
FR VE+ ++ E
Sbjct: 147 AFRGEVEKRMPEQVLERASSEE 168
Score = 43.1 bits (101), Expect = 2e-05
Identities = 20/152 (13%), Positives = 51/152 (33%), Gaps = 14/152 (9%)
Query: 494 NITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVV---IRVTGCPNGC 550
N + P + P I + R +++ + + L V G +
Sbjct: 6 NP--VGNPLAGIDPHEIVDT-RPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDLY 62
Query: 551 ARPYMAELGLVG---DGPNSYQIWLG--GTHNQTTLARTFMNKVKVQELEKVFEPLFYYW 605
P++ +L + +G + + +G + + A V +++ V + + +
Sbjct: 63 EHPHINDLAYMPATKNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAF 122
Query: 606 KQ---KRQTKDESFGDFTNRMGFEKLQELVEK 634
+ + + + +G E + VEK
Sbjct: 123 RDLGFRGNRQKCRMMWLIDELGMEAFRGEVEK 154
>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 103 bits (258), Expect = 2e-26
Identities = 52/212 (24%), Positives = 77/212 (36%), Gaps = 50/212 (23%)
Query: 196 GDLNRNVLAPPAPLVRKDYLFAQKTAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVK 255
GD R VL P D + T ++
Sbjct: 1 GDCPRVVLGSPLAGESLDEVLD----------PTWAIEEIVRRYIGKPD----------- 39
Query: 256 ARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQ 315
LPRK+K A++ D + +I ND+ + V+ P
Sbjct: 40 --------------------FADLPRKYKTAISGLQDVAHEI--NDVAFIGVNHPEHGP- 76
Query: 316 GFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRM 375
G +L+VGGG+ L R+G +VP ++ A+ R+ G R R +R+
Sbjct: 77 GLDLWVGGGLSTNPML---AQRVGA---WVPLGEVPEVWAAVTSVFRDYGYRRLRAKARL 130
Query: 376 KYLISSWGIEKFRSVVEQYYGKKFEPFRQLPE 407
K+LI WGI KFR V+E Y K+ PE
Sbjct: 131 KFLIKDWGIAKFREVLETEYLKRPLIDGPAPE 162
Score = 35.0 bits (80), Expect = 0.013
Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 12/145 (8%)
Query: 498 MACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYMAE 557
+ P + + I +I++R + L I +G + + +
Sbjct: 8 LGSPLAGESLDEVLDPTWAIEEIVRRYIGKPDFADLPRKYKTAI--SGLQDVAH--EIND 63
Query: 558 LGLVG-----DGPNSYQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTK 612
+ +G GP GG LA+ V + E+ +V+ + ++ +
Sbjct: 64 VAFIGVNHPEHGPGLDLWVGGGLSTNPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYGYRR 123
Query: 613 D---ESFGDFTNRMGFEKLQELVEK 634
G K +E++E
Sbjct: 124 LRAKARLKFLIKDWGIAKFREVLET 148
>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 149
Score = 102 bits (255), Expect = 3e-26
Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 11/148 (7%)
Query: 492 PLNITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCA 551
MAC + C L+ E ++ + E + + + + + + GCPN CA
Sbjct: 3 HWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCPNSCA 62
Query: 552 RPYMAELGLVG--------DGPNSYQIWLGGT--HNQTTLARTFMNKVKVQELEKVFEPL 601
R +A++G G +Q+ LGG + + +KV EL + +
Sbjct: 63 RIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRV 122
Query: 602 FYYWKQKRQTKDESFGDFTNRMGFEKLQ 629
+ + R + E F + R + L+
Sbjct: 123 VRNFVKHRS-EGERFAQWVIRAEEDDLR 149
Score = 42.1 bits (98), Expect = 4e-05
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 16/115 (13%)
Query: 279 LPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQ---GFNLYVGGGMGRTHRLETTF 335
L V + ++ I DIG ++G GF +++GG +G
Sbjct: 46 LDVPITVNINGCPNSCARIQIADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLD------- 98
Query: 336 PRLGEQLGYV--PKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFR 388
G +L +++ + +V ++ + R + + R
Sbjct: 99 AGFGRKLRQHKVTSDELGDYIDRVVRNFVKHRSEGE----RFAQWVIRAEEDDLR 149
>d1zj8a2 d.58.36.1 (A:10-161) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 152
Score = 100 bits (249), Expect = 3e-25
Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 16/139 (11%)
Query: 72 SKVEIIKEQSNF--IRYPLNEELL---TDAPNVNESATQLIKFHGSYQQYNRDERGAKS- 125
+ E +K+ N +R + D+ + ++ G Y Q + G +
Sbjct: 15 NANEELKKAGNPLDVRERIENIYAKQGFDSIDK-TDLRGRFRWWGLYTQREQGYDGTWTG 73
Query: 126 ---------YSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKD 176
FM+R + G +S T+ ++ +F T ++ RQ Q H + ++
Sbjct: 74 DDNIDKLEAKYFMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVEN 133
Query: 177 LKTVMRSIIRSMGSTLGAC 195
+ + R + T AC
Sbjct: 134 VPEIWRRLDDVGLQTTEAC 152
Score = 36.8 bits (85), Expect = 0.003
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 417 HEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIILCDIRKAWKRPI 475
+ + D G ++ +TL +I ++ I+ QN+ I I
Sbjct: 78 DKLEAKYFMMRVRCDGGALSAAALRTLGQISTEFARDTADISDRQNVQYHWIEVENVPEI 137
Query: 476 TTALAQAGL 484
L GL
Sbjct: 138 WRRLDDVGL 146
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 95.2 bits (237), Expect = 2e-24
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 414 LGWHEQGDGGLFCGLHVDNGRIAG----KMKKTLREIIEKYNLNVRITPNQNIILCDIRK 469
+GW + D L ++NGRI +K L EI + + + RIT NQN+I+ + +
Sbjct: 1 IGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPE 60
Query: 470 AWKRPITTALAQAGLL 485
+ K I ++GL+
Sbjct: 61 SEKAKIEKIAKESGLM 76
>d2akja2 d.58.36.1 (A:22-174) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 153
Score = 81.5 bits (201), Expect = 9e-19
Identities = 24/140 (17%), Positives = 59/140 (42%), Gaps = 16/140 (11%)
Query: 66 KTETKRSKVEIIKEQSNFIRYPLNEELLTDAPNVNESATQLI----------KFHGSYQQ 115
+ + + E +K + + ++ + + + A E + K+ G + +
Sbjct: 18 EFRSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGLFHR 77
Query: 116 YNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGI-GTLRLTTRQTFQLHGVLK 174
R FM+R K P G +++ + + ++G G +TTRQ +Q+ GV+
Sbjct: 78 -----RKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVL 132
Query: 175 KDLKTVMRSIIRSMGSTLGA 194
D+ +++ + ++L +
Sbjct: 133 PDVPEIIKGLESVGLTSLQS 152
Score = 44.1 bits (104), Expect = 8e-06
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 5/76 (6%)
Query: 414 LGWHEQ---GDGGLFCGLHVDNGRIAGKMKKTLREIIEKYNLN--VRITPNQNIILCDIR 468
LG + G L + NG + + L +I+KY + +T QN + +
Sbjct: 72 LGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVV 131
Query: 469 KAWKRPITTALAQAGL 484
I L GL
Sbjct: 132 LPDVPEIIKGLESVGL 147
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 80
Score = 75.2 bits (185), Expect = 2e-17
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 413 HLGWHEQGDGGLFCGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIILCDIRKAW 471
H+G +G G+ GR++G + + +++ + + +R TP Q +++ DI A
Sbjct: 5 HVGVQRLKNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVILDIPDAL 64
Query: 472 KRPITTALAQAGL 484
+ L GL
Sbjct: 65 LDDLIAGLDALGL 77
Score = 60.9 bits (148), Expect = 2e-12
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 8/74 (10%)
Query: 111 GSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLH 170
G + K+ + G+VS + + DL + G +R T Q +
Sbjct: 7 GVQRL--------KNGLNAVGVAPIAGRVSGTILTAVADLMARAGSDRIRFTPYQKLVIL 58
Query: 171 GVLKKDLKTVMRSI 184
+ L ++ +
Sbjct: 59 DIPDALLDDLIAGL 72
>d2akja3 d.134.1.1 (A:431-556) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 126
Score = 72.0 bits (176), Expect = 9e-16
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 496 TAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYM 555
+AC C AI E + + + ++ + V + TGCPN C + +
Sbjct: 7 GLVACTGSQFCGQAIIETKARALKVTEEVQ-----RLVSVTRPVRMHWTGCPNSCGQVQV 61
Query: 556 AELGLVG--------DGPNSYQIWLGGTHNQTT-LARTFMNKVKVQELEKVFEPLFY 603
A++G +G +++GG + L + V ++L V +
Sbjct: 62 ADIGFMGCMTRDENGKPCEGADVFVGGRIGSDSHLGDIYKKAVPCKDLVPVVAEILI 118
Score = 43.9 bits (103), Expect = 6e-06
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 280 PRKFKVAVTVPTDNSVDILTNDIGVVVVS---DENGEPQGFNLYVGGGMGRTHRLETTFP 336
R ++ T ++ + DIG + + +G +++VGG +G
Sbjct: 42 TRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSD-------S 94
Query: 337 RLGEQLG-YVPKEDILYAVKAIVVTQ 361
LG+ VP +D++ V I++ Q
Sbjct: 95 HLGDIYKKAVPCKDLVPVVAEILINQ 120
>d1aopa1 d.58.36.1 (A:81-145) Sulfite reductase, domains 1 and 3
{Escherichia coli [TaxId: 562]}
Length = 65
Score = 66.7 bits (163), Expect = 1e-14
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 129 MLRTKNPCGKVSNQLYLTMDDLADQFG-IGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRS 187
+LR + P G ++ + + +D A + G++RLT RQTFQ HG+LKK++K V + +
Sbjct: 1 LLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSV 60
Query: 188 MGSTL 192
L
Sbjct: 61 GLDAL 65
Score = 35.5 bits (82), Expect = 0.001
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 428 LHVDNGRIAGKMKKTLREIIEKYNLN--VRITPNQNIILCDIRKAWKRPITTALAQAGL 484
+ G I K + + + + + +R+T Q I K +P+ L GL
Sbjct: 4 CRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGL 62
>d2akja1 d.58.36.1 (A:346-430) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 85
Score = 65.9 bits (161), Expect = 4e-14
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 108 KFHGSYQQYNRDERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTF 167
++ G + Q + + P G++ + +AD +G G LRLT Q
Sbjct: 7 EYLGVHPQ-------KQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNI 59
Query: 168 QLHGVLKKDLKTVMR 182
+ V + +++
Sbjct: 60 IIPNVENSKIDSLLN 74
Score = 64.7 bits (158), Expect = 9e-14
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 407 EWEFKSHLGWHEQGDGGLF-CGLHVDNGRIAGKMKKTLREIIEKY-NLNVRITPNQNIIL 464
+WE + +LG H Q GL GLH+ GR+ + L I + Y + +R+T QNII+
Sbjct: 2 DWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIII 61
Query: 465 CDIRKA 470
++ +
Sbjct: 62 PNVENS 67
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite
reductase subunit alpha, DsrA {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 185
Score = 57.0 bits (137), Expect = 6e-10
Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 11/167 (6%)
Query: 496 TAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGCARPYM 555
T AC LC A + D+ + + Y I+ GCPN C
Sbjct: 5 TPSACMGPALCEFACYDTLELCYDLTMTYQDELHRPMWPYK--FKIKCAGCPNDCVASKA 62
Query: 556 AELGLVGDGPNSYQIWLG-------GTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQK 608
+ I +G G + E++++ E ++ +W ++
Sbjct: 63 RSDFAIIGTWRGATILIGGKAPFVEGAVIGWVAVPFVEVEKPYDEIKEILEAIWDWWDEE 122
Query: 609 RQTKDESFGDFTNRMGFEKLQELVEKWEGPAKA-TARYNLKLFADKE 654
+ E G+ R G + +++ + R N +F +K+
Sbjct: 123 GKF-RERIGELIWRKGMREFLKVIGREADVRMVKAPRNNPFMFFEKD 168
Score = 30.8 bits (69), Expect = 0.34
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 10/104 (9%)
Query: 289 VPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLETTFPRLGEQLGYVPKE 348
P D +D ++ G G P +
Sbjct: 53 CPNDCVASKARSDFAIIGTWRGATILIGGKAPFVEGAVIGWVAVPFVEVE------KPYD 106
Query: 349 DILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE 392
+I ++AI E G+ R+ LI G+ +F V+
Sbjct: 107 EIKEILEAIWDWWDEEGKF----RERIGELIWRKGMREFLKVIG 146
>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite
reductase subunit beta, DsrB {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 177
Score = 56.6 bits (136), Expect = 6e-10
Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 17/151 (11%)
Query: 494 NITAMACPSLPLCPLAITEAERGIPDILKRIRAVFEK-VGLKYNESVVIRVTGCPNGCAR 552
NI C T+A G + + VFE ++ V I + C N C
Sbjct: 6 NIVH--TQGWVHCHTPATDA-SGP--VKAIMDEVFEDFQSMRLPAPVRISLACCINMCGA 60
Query: 553 PYMAELGLVGDGPNSYQIWLGGTHNQTTLARTFM----------NKVKVQELEKVFEPLF 602
+ +++G+VG + + G ++ + L K + +
Sbjct: 61 VHCSDIGVVGIHRGDGVVIMVGGKVSNRISMPKFSKVVVAYIPNEPPRWPSLTKTIKHII 120
Query: 603 YYWKQKRQTKDESFGDFTNRMGFEKLQELVE 633
+ K E G++ R+G+E+ L
Sbjct: 121 EVYSANAY-KYERLGEWAERIGWERFFSLTG 150
Score = 48.5 bits (115), Expect = 4e-07
Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 15/143 (10%)
Query: 274 YGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLET 333
+ + LP ++++ + + +DIGVV + +G V + +
Sbjct: 38 FQSMRLPAPVRISLACCINMCGAVHCSDIGVVGIHRGDGVVIMVGGKVSNRISMPKFSKV 97
Query: 334 TFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVEQ 393
+ + + +K I+ N + + R+ G E+F S+
Sbjct: 98 VVAYIPNE--PPRWPSLTKTIKHIIEVYSANAYKYE----RLGEWAERIGWERFFSLT-- 149
Query: 394 YYGKKFEP-----FRQLPEWEFK 411
G +F FR + ++
Sbjct: 150 --GLEFSHHLIDDFRDPAYYTWR 170
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite
reductase subunit beta, DsrB {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 179
Score = 51.2 bits (122), Expect = 4e-08
Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 8/119 (6%)
Query: 274 YGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLET 333
+ LP ++++ + + +DI +V + D G L M ++
Sbjct: 40 FTDHKLPAMCRISLACCANMCGAVHASDIAIVGIHDGAAIMVGGKLSEARRMPELSKVVV 99
Query: 334 TFPRLGEQLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE 392
+ ++ VK I+ N + + R+ + G E+F +
Sbjct: 100 PWVPNEP----PRWPTLVKYVKQILEAWAANANK----HERLIEWVDRIGWERFFELTG 150
Score = 50.8 bits (121), Expect = 7e-08
Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 17/150 (11%)
Query: 494 NITAMACPSLPLCPLAITEAERGIPDILKRI-RAVFEK-VGLKYNESVVIRVTGCPNGCA 551
NI C +A I+K + ++E K I + C N C
Sbjct: 8 NIVH--TQGWIHCHTPAIDA----SGIVKAVMDELYEYFTDHKLPAMCRISLACCANMCG 61
Query: 552 RPYMAELGLVG---DGPNSYQIWLGG-----THNQTTLARTFMNKVKVQELEKVFEPLFY 603
+ +++ +VG L ++ + + L K + +
Sbjct: 62 AVHASDIAIVGIHDGAAIMVGGKLSEARRMPELSKVVVPWVPNEPPRWPTLVKYVKQILE 121
Query: 604 YWKQKRQTKDESFGDFTNRMGFEKLQELVE 633
W K E ++ +R+G+E+ EL
Sbjct: 122 AWAANAN-KHERLIEWVDRIGWERFFELTG 150
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite
reductase subunit alpha, DsrA {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 189
Score = 46.9 bits (111), Expect = 2e-06
Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 11/146 (7%)
Query: 496 TAMACPSLPLCPLAITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCPNGC----A 551
T +C C A +++ ++ + + Y + CPNGC A
Sbjct: 6 TPESCLGKSRCEFACYDSQAACYELTMEYQDELHRPAFPYK--FKFKFDACPNGCVASIA 63
Query: 552 RPYMAELGLVGDGPNSYQI----WLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQ 607
R + +G G + L G + L + E+++V E ++ +W +
Sbjct: 64 RSDFSVIGTWKRGASILCGAKAPILDGAQMGSLLVPFVAAEEPFDEIKEVVEKIWDWWME 123
Query: 608 KRQTKDESFGDFTNRMGFEKLQELVE 633
+ + E G+ R+ F+KL E+ E
Sbjct: 124 EGKN-RERLGETMKRLSFQKLLEVTE 148
Score = 28.4 bits (63), Expect = 2.2
Identities = 19/132 (14%), Positives = 31/132 (23%), Gaps = 12/132 (9%)
Query: 274 YGTQFLPRKFKVAVTVPTDNSVDILTNDIGVVVVSDENGEPQGFNLYVGGGMGRTHRLET 333
Y + F D + I S +G ++ G
Sbjct: 34 YQDELHRPAFPYKFKFKFDACPNGCVASIARSDFSVIGTWKRGASILCGAKAPILDG-AQ 92
Query: 334 TFPRLGEQLGYVPKEDILYA-VKAIVVTQRENGRRDDRKYSRMKYLISSWGIEKFRSVVE 392
L + D + V+ I E G+ R+ + +K V E
Sbjct: 93 MGSLLVPFVAAEEPFDEIKEVVEKIWDWWMEEGK----NRERLGETMKRLSFQKLLEVTE 148
Query: 393 QYYGKKFEPFRQ 404
P Q
Sbjct: 149 ------IAPVPQ 154
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase subunit
beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Length = 134
Score = 39.2 bits (92), Expect = 3e-04
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 120 ERGAKSYSFMLRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKT 179
E G K Y+ +R +S M D+AD++ G LR TTR + + LK
Sbjct: 56 ESGDKVYT--VRVGAA-RLMSITHIREMCDIADKYCGGHLRFTTRNNVEFMVADEASLKA 112
Query: 180 VMRSIIRSMGSTLGACG 196
+ + S G+
Sbjct: 113 LKED-LASRKFDGGSLK 128
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit
beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 119
Score = 36.1 bits (84), Expect = 0.002
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 149 DLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMRSIIRSMGSTLGACGD 197
D+AD++ G LR T+R + + + ++ + +G G D
Sbjct: 69 DIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEVQERVGFPCGGTWD 117
>d2r48a1 c.44.2.2 (A:2-104) Mannose-specific enzyme IIBCA component
ManP, N-terminal domain {Bacillus subtilis [TaxId:
1423]}
Length = 103
Score = 30.0 bits (68), Expect = 0.23
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 540 VIRVTGCPNGCARPYMAELGL 560
++ +T CPNG A YMA L
Sbjct: 2 LLAITSCPNGIAHTYMAAENL 22
>d2r4qa1 c.44.2.2 (A:171-273) Fructose-specific enzyme IIABC
component FruA, middle domain {Bacillus subtilis [TaxId:
1423]}
Length = 103
Score = 29.6 bits (67), Expect = 0.34
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 540 VIRVTGCPNGCARPYMAELGL 560
++ VT CP G A +MA L
Sbjct: 2 ILAVTACPTGIAHTFMAADAL 22
>d2f69a1 b.76.2.1 (A:116-193) Histone H3 K4-specific
methyltransferase SET7/9 N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 78
Score = 29.0 bits (65), Expect = 0.38
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 220 TAENIAALLTPQSGFYYDMWVDGEQIMTAEPPEVVKARNDNSHGTNFPDSP 270
T E IA + + Y ++DGE I + ++ H P +
Sbjct: 25 TGEKIAYVYPDERTALYGKFIDGEMIE-GKLATLMSTEEGRPHFELMPGNS 74
>d7ahla_ f.6.1.1 (A:) Alpha-hemolysin {Staphylococcus aureus [TaxId:
1280]}
Length = 293
Score = 29.8 bits (67), Expect = 1.1
Identities = 10/87 (11%), Positives = 19/87 (21%), Gaps = 4/87 (4%)
Query: 253 VVKARNDNSHGTNFPDSPEPIYGTQFLPRKFKVAVTVPTDNSVDIL----TNDIGVVVVS 308
V++ + + P FKV + +P + I N I
Sbjct: 54 VIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYM 113
Query: 309 DENGEPQGFNLYVGGGMGRTHRLETTF 335
N+ +
Sbjct: 114 STLTYGFNGNVTGDDTGKIGGLIGANV 140
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 27.4 bits (61), Expect = 1.1
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 433 GRIAGKMKKTLREIIEKYNLNVRITPNQNIIL 464
R+ GK K + K ++ + N I
Sbjct: 13 PRVIGKNKSMYETLTSKSGCSIFVANNGRIWA 44
>d1ydua1 b.162.1.1 (A:2-170) Hypothetical protein At5g01610 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 169
Score = 28.5 bits (64), Expect = 1.6
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 434 RIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKA 470
+I GKM+K L E++++Y+L + I P + + +
Sbjct: 44 KIKGKMQKPLPELLKEYDLPIGIFP-GDATNYEFDEE 79
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 27.0 bits (60), Expect = 2.3
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 433 GRIAGKMKKTLREIIEKYNLNVRITPNQNIIL 464
R+ GK ++ + + ++ + + N I +
Sbjct: 13 PRVIGKKGSMIKLLKSELDVQIVVGQNGLIWV 44
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea
mays) [TaxId: 4577]}
Length = 289
Score = 27.6 bits (61), Expect = 5.0
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 592 QELEKVFEPLFYYWKQKRQTKDESFGDFTNRM--GFEKLQELVEKWEGP 638
QEL V L Y +D ++ F +R+ L +L W P
Sbjct: 103 QELASVLGTLSYVEGF-AFQRDVAYAAFLDRVHGEEVALNKLGL-WRVP 149
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga
maritima [TaxId: 2336]}
Length = 141
Score = 26.7 bits (58), Expect = 5.2
Identities = 8/115 (6%), Positives = 35/115 (30%)
Query: 568 YQIWLGGTHNQTTLARTFMNKVKVQELEKVFEPLFYYWKQKRQTKDESFGDFTNRMGFEK 627
+Q + + +++ ++ ++ K+ D+ + + +
Sbjct: 17 FQHEFRRDEDLEQILEEILDETYDKKAKEDARRYIRGIKENLSMIDDLISRYLEKWSLNR 76
Query: 628 LQELVEKWEGPAKATARYNLKLFADKETYEAVDELAKLQNKNAHQLAIEVIRNFV 682
L + A + + + EA++ + +N+ + ++
Sbjct: 77 LSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIA 131
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 26.0 bits (57), Expect = 5.4
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 433 GRIAGKMKKTLREIIEKYNLNVRITPNQNIILCDI 467
+ G + +R I+E+ V I D
Sbjct: 22 NSLIGTKGRLIRSIMEECG-GVHIHFPVEGSGSDT 55
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 25.4 bits (56), Expect = 6.4
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 433 GRIAGKMKKTLREIIEKYNLNVRITP 458
+ GK + L+++ K ++I
Sbjct: 22 RFVIGKNGEKLQDLELKTATKIQIPR 47
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 25.5 bits (56), Expect = 7.0
Identities = 3/26 (11%), Positives = 15/26 (57%)
Query: 433 GRIAGKMKKTLREIIEKYNLNVRITP 458
+ G+ +R++++++ +N+ +
Sbjct: 22 RYVIGQKGSGIRKMMDEFEVNIHVPA 47
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854
{Oenococcus oeni [TaxId: 1247]}
Length = 135
Score = 26.3 bits (57), Expect = 7.2
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 434 RIAGKMKKTLREIIEKYNLNVRITPNQNIILCDIRKAWKRPIT-TALAQA 482
+ +M +KY+L T Q I+ + + + + L
Sbjct: 9 IASNQMSTRFDIFAKKYDL----TGTQMTIIDYLSRNKNKEVLQRDLESE 54
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 26.7 bits (58), Expect = 7.8
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 414 LGWHEQGDGGLFCGLHVDNGRIAGKMKKT--LREIIEKYNLNVRITP 458
+G + + +++T R I E+YN I P
Sbjct: 125 GRAARNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRKHGIVP 171
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.2 bits (59), Expect = 8.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 509 AITEAERGIPDILKRIRAVFEKVGLKYNESVVIRVTGCP 547
AIT AE D +R + + V + ++ + +TG P
Sbjct: 22 AITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVP 60
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1,
ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 25.1 bits (55), Expect = 9.6
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 433 GRIAGKMKKTLREIIEKYNLNVRITPNQN 461
R+ G+ L+ + EK +I +N
Sbjct: 13 PRVIGRKMSMLKTLEEKT--ECKIFVARN 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,584,184
Number of extensions: 126984
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 58
Length of query: 691
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 599
Effective length of database: 1,144,436
Effective search space: 685517164
Effective search space used: 685517164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)