BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005565
(691 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 493 SSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVNMQGARSKLS 540
S +A+ C + L A+ M V H D+ PEN++ ++GA KL+
Sbjct: 119 SEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLA 166
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 479 GEPLSLVLAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVN 531
G LS + GPLS + A L ++ A M + H DI P+NI+ N
Sbjct: 95 GPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSN 147
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 33/178 (18%)
Query: 441 EIIASGRILHSGSCKKQ--------TPGGCCDHPLC---------GTPILVTSPVGEPLS 483
EI + + L SG +KQ + G DHP TP+++ + E S
Sbjct: 61 EIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGS 120
Query: 484 L---VLAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVNMQGARSKLS 540
L + +DG + + R ++ A MN H D+ NI+ N+ K+S
Sbjct: 121 LDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLV---CKVS 177
Query: 541 YMPISWGRAVLEDRDSPS--------INLQFSSSHALQHGKLCPSSDAESLVYLLYFV 590
+S R + +D P+ I +++++ A+Q+ K +SD S +++ V
Sbjct: 178 DFGLS--RFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEV 233
>pdb|2HW6|A Chain A, Crystal Structure Of Mnk1 Catalytic Domain
pdb|2HW6|B Chain B, Crystal Structure Of Mnk1 Catalytic Domain
Length = 307
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 485 VLAH---DGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIIC 528
+LAH + EA+R RD AL + H D+ PENI+C
Sbjct: 98 ILAHIQKQKHFNEREASRVVRDVAAALDFLHTKGIAHRDLKPENILC 144
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 15 FTQSLEDWVLQKSLADPASGKQSFRSPFLMDELCRLDLALEGVLFQQLCRMPCSSYASYD 74
F + ++V K + P G ++ L + L R+ L + + + + Y
Sbjct: 38 FMEIPMNFVDPKEIDIPRHGTKNRYKTILPNPLSRVCLRPKNITDSLSTYINANYIRGYS 97
Query: 75 LKEDEFLAVEDFLHAIVNGLWRTFWRKSGPLPFFLSCPRHPGSK--FYSVEKAISRGRID 132
KE F+A + + VN W+ W++ P+ ++ + K Y EK G+++
Sbjct: 98 GKEKAFIATQGPMINTVNDFWQMVWQEDSPVIVMITKLKEKNEKCVLYWPEKRGIYGKVE 157
Query: 133 EL 134
L
Sbjct: 158 VL 159
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 486 LAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVNMQGARSKL 539
+ H +A R +D L A+ +NV H D+ PEN + + + + KL
Sbjct: 114 VVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKL 167
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 486 LAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVNMQGARSKL 539
+ H +A R +D L A+ +NV H D+ PEN + + + + KL
Sbjct: 97 VVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKL 150
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 493 SSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVNMQGARSKLS 540
S +A+ C + L A+ M V H ++ PEN++ ++GA KL+
Sbjct: 108 SEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLA 155
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 493 SSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVNMQGARSKLS 540
S +A+ C + L A+ M V H D+ PEN++ +GA KL+
Sbjct: 101 SEADASHCIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLA 148
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 57 VLFQQLCRMPCSSY--ASY--DLKE-DEFLAVEDFLHAIVNGLWRTFWRKSGPLPFFLS 110
V+ QL +PCS Y ASY KE ++F+A + VN WR W + L+
Sbjct: 71 VILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQKSATIVMLT 129
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 493 SSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVNMQGARSKLS 540
S +A+ C + L ++ L + H D+ PEN++ +GA KL+
Sbjct: 101 SEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLA 148
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 493 SSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVNMQGARSKLS 540
S +A+ C + L ++ L + H D+ PEN++ +GA KL+
Sbjct: 101 SEADASHCIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLA 148
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 32/189 (16%)
Query: 412 DMSLWYQVQRQTKVLNTLRQEGVSSKYLPEIIASGRILHSGSCKKQTPGGCCDHPLCGTP 471
D S + + +R+ + L + + Y A+G + +TP G PL P
Sbjct: 52 DPSFYLRFRREAQNAAALNHPAIVAVY-----ATG--------EAETPAG----PL---P 91
Query: 472 ILVTSPV-GEPLSLVLAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIV 530
+V V G L ++ +GP++ + A D AL + + H D+ P NI
Sbjct: 92 YIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANI---- 147
Query: 531 NMQGARSKLSYMPISWGRAVLEDRDSPSI------NLQFSSSHALQHGKLCPSSDAESLV 584
M A + + M RA+ + +S + Q+ S + + SD SL
Sbjct: 148 -MISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLG 206
Query: 585 YLLYFVCGG 593
+LY V G
Sbjct: 207 CVLYEVLTG 215
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 32/189 (16%)
Query: 412 DMSLWYQVQRQTKVLNTLRQEGVSSKYLPEIIASGRILHSGSCKKQTPGGCCDHPLCGTP 471
D S + + +R+ + L + + Y + + +TP G PL P
Sbjct: 69 DPSFYLRFRREAQNAAALNHPAIVAVY-------------DTGEAETPAG----PL---P 108
Query: 472 ILVTSPV-GEPLSLVLAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIV 530
+V V G L ++ +GP++ + A D AL + + H D+ P NI
Sbjct: 109 YIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANI---- 164
Query: 531 NMQGARSKLSYMPISWGRAVLEDRDSPSI------NLQFSSSHALQHGKLCPSSDAESLV 584
M A + + M RA+ + +S + Q+ S + + SD SL
Sbjct: 165 -MISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLG 223
Query: 585 YLLYFVCGG 593
+LY V G
Sbjct: 224 CVLYEVLTG 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,213,488
Number of Sequences: 62578
Number of extensions: 814996
Number of successful extensions: 1955
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1944
Number of HSP's gapped (non-prelim): 20
length of query: 691
length of database: 14,973,337
effective HSP length: 106
effective length of query: 585
effective length of database: 8,340,069
effective search space: 4878940365
effective search space used: 4878940365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)