BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005565
(691 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6RET6|CCAMK_PEA Calcium and calcium/calmodulin-dependent serine/threonine-protein
kinase (Fragment) OS=Pisum sativum GN=SYM9 PE=1 SV=2
Length = 527
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 479 GEPLSLVLAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVNMQGARSK 538
GE ++A D S EA+ + L N+ H D+ PEN C+ G S
Sbjct: 139 GELFDRIVAQD-KYSETEASTVVHQIVAGLEAIHRANIIHRDLKPEN--CLFLDVGKDSS 195
Query: 539 LSYMPISWGRAVLEDRDSPSINL----QFSSSHALQHGKLCPSSDAESLVYLLYFVCGG 593
L M +G + +E+ P + L + S AL GK+ SD SL +LY + G
Sbjct: 196 LKIM--DFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSG 252
>sp|Q8KY50|STKP1_STRPN Serine/threonine-protein kinase StkP OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=stkP PE=1
SV=1
Length = 659
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 491 PLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIIC 528
PLS+EEA R R LLA+R A + H D+ P+NI+
Sbjct: 107 PLSNEEAVRIMRQILLAMRLAHTRGIVHRDLKPQNILL 144
>sp|Q8DNS0|STKP_STRR6 Serine/threonine-protein kinase StkP OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=stkP PE=1 SV=1
Length = 659
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 491 PLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIIC 528
PLS+EEA R LLA+R A + H D+ P+NI+
Sbjct: 107 PLSNEEAVRIMGQILLAMRLAHTRGIVHRDLKPQNILL 144
>sp|Q04J43|STKP_STRP2 Serine/threonine-protein kinase StkP OS=Streptococcus pneumoniae
serotype 2 (strain D39 / NCTC 7466) GN=stkP PE=1 SV=1
Length = 659
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 491 PLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIIC 528
PLS+EEA R LLA+R A + H D+ P+NI+
Sbjct: 107 PLSNEEAVRIMGQILLAMRLAHTRGIVHRDLKPQNILL 144
>sp|Q97PA9|STKP2_STRPN Serine/threonine-protein kinase StkP OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=stkP PE=1
SV=1
Length = 659
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 491 PLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIIC 528
PLS+EEA R LLA+R A + H D+ P+NI+
Sbjct: 107 PLSNEEAVRIMGQILLAMRLAHTRGIVHRDLKPQNILL 144
>sp|A0AAR7|CCAMK_LOTJA Calcium and calcium/calmodulin-dependent serine/threonine-protein
kinase OS=Lotus japonicus GN=CCAMK PE=1 SV=1
Length = 518
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 12/173 (6%)
Query: 428 TLRQEGVSSKYLP-EIIASGRILHSGSCKKQTPG--GCCDHPLCGTPILVTSPVGEPLSL 484
+LRQ VS L EI+ RI+ + S C+ +L GE
Sbjct: 71 SLRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVCEDSNGVHLVLELCSGGELFDR 130
Query: 485 VLAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVNMQGARSKLSYMPI 544
++A D + EA R L ++ H D+ PEN + + + + + K+ +
Sbjct: 131 IVAQD-KYAETEAAAVVRQIAAGLEAVHKADIVHRDLKPENCLFLDSRKDSPLKI----M 185
Query: 545 SWGRAVLEDRDSPSINL----QFSSSHALQHGKLCPSSDAESLVYLLYFVCGG 593
+G + +E+ P + L + S AL GK+ SD SL +LY + G
Sbjct: 186 DFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITAKSDMWSLGVILYILLSG 238
>sp|Q6RET7|CCAMK_MEDTR Calcium and calcium/calmodulin-dependent serine/threonine-protein
kinase DMI-3 OS=Medicago truncatula GN=DMI3 PE=2 SV=1
Length = 523
Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Query: 479 GEPLSLVLAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVNMQGARSK 538
GE ++A D S EA L N+ H D+ PEN C+ S
Sbjct: 131 GELFDRIVAQD-KYSETEAATVVHQIASGLEAVHRANIVHRDLKPEN--CLFLDVRKDSP 187
Query: 539 LSYMPISWGRAVLEDRDSPSINL----QFSSSHALQHGKLCPSSDAESLVYLLYFVCGG 593
L M +G + +E+ P + L + S AL GK+ SD SL +LY + G
Sbjct: 188 LKIM--DFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSG 244
>sp|P25389|KCC4_YEAST Probable serine/threonine-protein kinase KCC4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=KCC4 PE=1
SV=3
Length = 1037
Score = 36.6 bits (83), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 472 ILVTSPVGEPLSLVLAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIIC 528
IL + GE +L++ H GPL EA C R ++ + + + H D+ PEN++
Sbjct: 105 ILEYAEKGELFNLLVDH-GPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLL 160
>sp|B2V2T4|TRPB_CLOBA Tryptophan synthase beta chain OS=Clostridium botulinum (strain
Alaska E43 / Type E3) GN=trpB PE=3 SV=1
Length = 405
Score = 36.2 bits (82), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Query: 253 DQIWNKLGNASWGDLGTLQVILATFYSIVQWNGPPRKSIAS------LASDHSLRLQKRR 306
+++ + + +G+ G + + N P SIAS + +H+ + R
Sbjct: 270 EKLGDHAASMKYGEKGVMHGFESIMLKDKNGNPAPVYSIASGLDYPSVGPEHAFLRELGR 329
Query: 307 LEYRLIDNGNAPVPFQQASHEQGEIVEVEQSDN-PYSRKQASRLKLKQGEILVLEDQRQG 365
++Y++I++ A F + S +G I +E S Y+ K+A ++KQG ILV R
Sbjct: 330 VDYKVINDEEAMEAFFKLSRYEGIIPAIESSHAVAYAMKKAK--EMKQGSILVCLSGRGD 387
Query: 366 QKSFQIQESLALGNHFI 382
+ + E G +
Sbjct: 388 KDIDYVVEHYGYGEQYF 404
>sp|Q43531|CCAMK_LILLO Calcium and calcium/calmodulin-dependent serine/threonine-protein
kinase OS=Lilium longiflorum GN=CCAMK PE=1 SV=1
Length = 520
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 479 GEPLSLVLAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIICIVNMQGARSK 538
GE ++A D S EA + L + H D+ PEN C+ Q RS
Sbjct: 127 GELFDRIVAQDR-YSESEAAEVVQQIASGLAALHKSTIIHRDLKPEN--CLFLNQEKRST 183
Query: 539 LSYMPISWGRAVLEDRDSPSINL----QFSSSHALQHGKLCPSSDAESLVYLLYFVCGG 593
L M +G + +ED P + L + S AL ++ +SD SL +LY + G
Sbjct: 184 LKIM--DFGLSSVEDFTDPIVALFGSIDYVSPEALSQRQVSSASDMWSLGVILYILLSG 240
>sp|Q18C47|PYRC_CLOD6 Dihydroorotase OS=Clostridium difficile (strain 630) GN=pyrC PE=3
SV=1
Length = 421
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 464 DHPLCGTPILVTSPVGEPLSLVLAHDGPLSSEEATRCCRDCLLALRTAALMNVQH 518
D L G P + V L L G S E RDC+LAL+T A +++QH
Sbjct: 181 DPSLVGNPGVNAGKVASELGL----KGASSVAEDVMVARDCMLALKTGAKVDIQH 231
>sp|P24381|US03_SUHVN Serine/threonine-protein kinase US3 homolog OS=Suid herpesvirus 1
(strain NIA-3) GN=PK PE=3 SV=2
Length = 390
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 483 SLVLAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENI-------ICIVNMQGA 535
S + DGPL +A R R L L M + H D+ ENI +C+ ++ A
Sbjct: 186 SYLTMRDGPLDMRDAGRVIRSVLRGLAYLHGMRIMHRDVKAENIFLEDVDTVCLGDLGAA 245
Query: 536 RSKLSYMPISWGRAVLEDRDSPSI 559
R ++ P +G A + ++P +
Sbjct: 246 RCNVA-APNFYGLAGTIETNAPEV 268
>sp|B2TM49|TRPB_CLOBB Tryptophan synthase beta chain OS=Clostridium botulinum (strain
Eklund 17B / Type B) GN=trpB PE=3 SV=1
Length = 405
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Query: 253 DQIWNKLGNASWGDLGTLQVILATFYSIVQWNGPPRKSIAS------LASDHSLRLQKRR 306
+++ + + +G+ G + + + P SIAS + +H+ + R
Sbjct: 270 EKLGDHAASMKYGEKGVMHGFESIMLKDKNGDPAPVYSIASGLDYPSVGPEHAFLRELGR 329
Query: 307 LEYRLIDNGNAPVPFQQASHEQGEIVEVEQSDN-PYSRKQASRLKLKQGEILVLEDQRQG 365
++Y++I++ A F + S +G I +E S Y+ K+A ++KQG ILV R
Sbjct: 330 VDYKVINDEEAMEAFFKLSRYEGIIPAIESSHAVAYAMKKAE--EMKQGSILVCLSGRGD 387
Query: 366 QKSFQIQESLALGNHFI 382
+ I E G +
Sbjct: 388 KDIDYIVEHYGYGEQYF 404
>sp|Q86E67|DRE2_SCHJA Anamorsin homolog OS=Schistosoma japonicum GN=SJCHGC06006 PE=2 SV=1
Length = 276
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)
Query: 375 LALGNHFIYIAVSVDNPTELLTVYVGAHPSRLEPSWE--DMSLWYQVQRQTKVLNTLRQE 432
L GNH I+IA N T ++ + S +E +WE D Y V + N+L Q+
Sbjct: 126 LPGGNHLIFIAFVPSNYTRGSSIKLPWAHSDIEAAWENVDNETSYDVDKNLINTNSLLQK 185
Query: 433 GVSSKYLPEIIASGRILHSGSCKKQTPGGCCDHPLCGTPILVTSPVGEPLSLVLAHDGPL 492
S Y+ + A G+ S K+ C + CG + + V + + ++ G
Sbjct: 186 ---SDYVTPLAACGQEFAKNSIGKRKRA--CKNCTCGLAEIEATEVEDKSVVSISSCGNC 240
Query: 493 SSEEATRC 500
+A RC
Sbjct: 241 YLGDAFRC 248
>sp|Q9XBQ0|PKN3_MYXXA Serine/threonine-protein kinase pkn3 OS=Myxococcus xanthus GN=pkn3
PE=3 SV=1
Length = 547
Score = 33.9 bits (76), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 425 VLNTLRQ-----EGVSSKYLPEIIASGRILHSGSCKKQTPGGCCDHPLCGTPILVTSPVG 479
VL LR E +++ E A+ R+ H S G D L I + G
Sbjct: 45 VLKVLRHTLLSDERTVARFQREAKAASRLNHPNSISVLDFGQAEDGALF---IAMEYVAG 101
Query: 480 EPLSLVLAHDGPLSSEEATRCCRDCLLALRTAALMNVQHGDICPENIIC 528
+ L +L+ + PL+ R L AL A V H D+ PENI+
Sbjct: 102 QDLHQILSREWPLNEGRVVRIVSQVLSALSDAHGAGVIHRDLKPENIMV 150
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,640,978
Number of Sequences: 539616
Number of extensions: 10843590
Number of successful extensions: 24355
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 24346
Number of HSP's gapped (non-prelim): 22
length of query: 691
length of database: 191,569,459
effective HSP length: 124
effective length of query: 567
effective length of database: 124,657,075
effective search space: 70680561525
effective search space used: 70680561525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)