Query         005566
Match_columns 691
No_of_seqs    191 out of 237
Neff          6.0 
Searched_HMMs 46136
Date          Fri Mar 29 01:29:43 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005566hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG2225 Proteins containing re 100.0  2E-126  3E-131 1001.1  29.5  609    1-658     1-656 (695)
  2 PF09742 Dymeclin:  Dyggve-Melc 100.0  3E-121  6E-126 1061.7  47.1  609    1-656     1-660 (678)
  3 PF12722 Hid1:  High-temperatur 100.0 1.1E-83 2.4E-88  765.2  29.3  504    1-597     1-600 (895)
  4 KOG2226 Proteins containing re 100.0 1.1E-81 2.4E-86  689.8  28.6  498    1-599     1-554 (786)
  5 PF08427 DUF1741:  Domain of un  97.7 0.00018 3.9E-09   74.6   9.9  185  459-660     6-223 (237)
  6 KOG4654 Uncharacterized conser  95.8   0.027 5.9E-07   55.9   7.5  101  556-656    99-229 (252)
  7 PF03224 V-ATPase_H_N:  V-ATPas  41.4 1.4E+02   0.003   32.2   9.2  123  375-524   169-296 (312)
  8 KOG1077 Vesicle coat complex A  35.5 1.5E+02  0.0032   36.0   8.5  213  375-662   389-615 (938)
  9 COG1516 FliS Flagellin-specifi  25.8      64  0.0014   30.9   3.0   86  556-644    30-119 (132)
 10 COG4321 Uncharacterized protei  20.7   1E+02  0.0022   28.2   3.0   56   31-89     28-83  (102)

No 1  
>KOG2225 consensus Proteins containing regions of low-complexity [General function prediction only]
Probab=100.00  E-value=1.6e-126  Score=1001.14  Aligned_cols=609  Identities=28%  Similarity=0.467  Sum_probs=531.7

Q ss_pred             CCCCCCcccccCCCCcchhHHHHHHhhCCccCCCCchhHHHhhcCCCCCCCCch---------hhHHHHHHHHHhcCCCc
Q 005566            1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSH---------RVHQACEAFAQNNCYTR   71 (691)
Q Consensus         1 MG~~~Sk~~~~~~~~~~~n~~l~~~Ls~~~~I~~~D~FW~qfws~p~s~~~p~d---------~l~~~~~~L~~nN~~t~   71 (691)
                      ||...||-.     ++.+|.|+ +||+|.++.+++|||||+++++  |+.-|.|         ++.+.||.++.||.+||
T Consensus         1 mg~~itk~~-----~l~~n~~l-kk~~g~~~~~d~d~fwn~ll~~--~l~~~d~~ed~i~les~ld~~~q~~~~n~~~tg   72 (695)
T KOG2225|consen    1 MGSVITKET-----VLQENIYL-KKLSGLEPVDDYDPFWNKLLSF--SLKFDDDDEDRIALESALDDHLQCLMYNTQTTG   72 (695)
T ss_pred             CCcccchhh-----hcchhHHH-HHhcCCCcCccccHHHHhhhhe--eeecCCCcHHHhhhHHHHHHHHHHHhcCCcccC
Confidence            999999976     88999999 9999988888888999999999  6565542         78888999999999999


Q ss_pred             cHHHHHHHHHHHHHHhHhcCCCCchH-HHHHHHHHHHHHHhhhheeecCChhhHHHhhcccCCC--------------CC
Q 005566           72 HLAKILIHLTWCLQECISSSGTASVA-IMKAINAVYISSVFLKYLIENAESENFEELHLSLDES--------------EP  136 (691)
Q Consensus        72 Nl~tLi~~l~~rL~~l~~~~~~~~~~-~~qalNclriLtriLpyl~E~~~~~~~~~~fw~~~~~--------------e~  136 (691)
                      ||+++|+.+.+|..|++.++++.+.. .||+.||++|+|.+.+|+-|.++|.++-+.|-....+              |+
T Consensus        73 nf~a~i~~fl~r~tel~t~~~~e~~~~~wqt~nal~ilr~i~r~l~q~~te~e~~~~f~~~~~s~~~ess~~~~~~~~~d  152 (695)
T KOG2225|consen   73 NFAAFIRLFLRRATELKTSEQCENKIYLWQTSNALLILRYIARFLTQRMTEKEFVRIFAKSHESTETESSSTSSSSDEED  152 (695)
T ss_pred             cHHHHHHHHHHHHHhhcchHhhhcceeehhhccHHHHHHHHHHHHHhhccHHHHHHHHHhCcchhhhhhhhhcccCCccc
Confidence            99999999999999999988765554 9999999999999999999999988753333211000              01


Q ss_pred             CCc------------C---cccchhhHHHHHHhhcccccccCCCchhhhHHHHHHHHHHHHhchhcCCCCCCCCCCCCch
Q 005566          137 LPK------------E---FVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPF  201 (691)
Q Consensus       137 ~~~------------~---f~~~~~ve~~lweagvg~~~svp~~~~t~~~h~EvlrlLLvllS~qLY~~~~~~~~~~~~~  201 (691)
                      +.+            .   ...+.+.|.+ -.++|.+++.+|++..||.+|+|++|||+|++|+|||+..   +.+.+..
T Consensus       153 ~~~~~~e~~~~~~a~~~~~iv~~~~~e~f-~~~lv~ili~i~v~e~t~~ih~eav~~l~tlLS~qLf~~~---~~~~SIv  228 (695)
T KOG2225|consen  153 DDEQKSENENNNGATKYIPIVFQNTAEEF-TYELVSILINISVNETTLAIHVEAVRCLLTLLSSQLFNES---IVNTSIV  228 (695)
T ss_pred             chhHHhhccccCCccccceEEecccHHHH-HHHHHHheEEeeccceeehhhHHHHHHHHHHHHHHHhhhc---cccceeE
Confidence            000            0   2346788888 6699999999999999999999999999999999999985   4457888


Q ss_pred             hHhhhccC-ccchHHHHHHHHHhhhcCCCCCCCCCcccccccCCCCcchhhccccccccccccccccccc----CCCCCC
Q 005566          202 IDAAMTEE-SSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSS----NGEGSS  276 (691)
Q Consensus       202 l~~~~~~~-~~~al~Ll~SLL~n~i~~~~~p~~~~~y~~~~d~~~~gi~~~~gs~~~~~~~lPy~~l~~~----~~~d~~  276 (691)
                      +++++.+. .+|+..|+++||.|+++++++|..     .++.+.+||+++|++++.|++|.+-...-+.+    ++.+-.
T Consensus       229 fr~~~~g~C~~ha~~L~ktLL~n~~r~~~~pH~-----~~q~s~~Gs~vfGlAss~~siftv~~~~gi~~~~aa~~peLs  303 (695)
T KOG2225|consen  229 FRFFIDGSCAKHAASLTKTLLLNYLRHNSEPHM-----TVQKSQEGSIVFGLASSMWSIFTVQMATGIDSAEAAKKPELS  303 (695)
T ss_pred             EEeeecCchHHHHHHHHHHHHHHHHHhcCCCcc-----cccCCCCCceeeehhhHHHHHHHhhhccCcchhhhccCCCCC
Confidence            88899864 789999999999999999998864     34566677899999999998777665333321    122345


Q ss_pred             chHHHHHHHHHHHHhhcCCCCCCCCCcccCCCCCCCcccccccCCCCCCChHHHHhhccccccccccccCCCCCCC-Ccc
Q 005566          277 NPLTDCSLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENARDIEFGHMDLEGNAHSG-PVV  355 (691)
Q Consensus       277 ~pL~~~slqlLlVLl~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~fr~~L~~~~D~~f~~~~~~~~~~~~-~~~  355 (691)
                      .||+++|+++||+|.+|++.                          ...||||+.|+.++|.|.    ...-|..| -.+
T Consensus       304 ~PLaNqSlLLlL~Lsnh~~a--------------------------~dsNpyr~tl~sf~n~qd----ss~~P~qg~vsF  353 (695)
T KOG2225|consen  304 LPLANQSLLLLLNLSNHQPA--------------------------NDSNPYRETLASFQNAQD----SSTLPTQGIVSF  353 (695)
T ss_pred             ccccchhHHHHHHHhcCCCc--------------------------ccCCHHHHHHHHhhcccc----cCCCCCCCceEE
Confidence            69999999999999998431                          145999999999999882    23334333 379


Q ss_pred             cccchhHHHHhccccCchhHHHHHHHHhhcCccchhhhhcccchhhhHHHHHHHHHhcccCCCCchHHHHHHHHHhcCCc
Q 005566          356 RLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDS  435 (691)
Q Consensus       356 ~i~f~~l~~~l~~~~~~e~~~lLLy~Ll~~N~~F~~~vl~~~d~~~lv~piL~~ly~~~~~~s~~v~m~l~ILLiLS~d~  435 (691)
                      +|+|+++|+++|.+.++|+.++|||.|||.|++||+||++|.|++++|+|||++||++++++||||||++|+|||||+|+
T Consensus       354 qIdfn~lYe~LC~~~t~dqatLLLY~LLh~Ns~fr~yvl~r~dlEnLVvPiL~iLy~a~~~NSHHvYmaLIvlLILsEDd  433 (695)
T KOG2225|consen  354 QIDFNGLYERLCATATQDQATLLLYMLLHANSGFRNYVLSRIDLENLVVPILRILYDATSNNSHHVYMALIVLLILSEDD  433 (695)
T ss_pred             EEehHHHHHHHHHHhccchhHHHHHHHHhccccHHHHHHhhccHHHhHHHHHHHHhcCCcCCccchHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccCCCccccccccccccchhHHHHHHHHHHhhccccccccccchhHHHHHhhcccccccCCHHHHHHHHHH
Q 005566          436 SFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSL  515 (691)
Q Consensus       436 ~F~~~ln~~~l~~i~w~~er~~~~~SlgdLlIlvl~r~I~~n~~~l~~~ylh~~cLa~LaN~sp~~~~Ls~~asqRLv~L  515 (691)
                      +|||++|+++++++.||.||.++++|+|+++|+|++|+|+|||.|.||+||||||||+|||||.+||+||+|+||||++|
T Consensus       434 gFnk~iHe~mlKnitWyser~v~EISLGglliLvviRtIQyNmlktRDkYLHTNCLAALANMSa~Fr~LhpyvaQRliSL  513 (695)
T KOG2225|consen  434 GFNKIIHETMLKNITWYSERSVREISLGGLLILVVIRTIQYNMLKTRDKYLHTNCLAALANMSAFFRNLHPYVAQRLISL  513 (695)
T ss_pred             hhhHHHHHHHHhhccceecceeeeeeccceeeeeeHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHhhhhcccc-CCCCCCCC-chhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhHhhhccccccccc
Q 005566          516 FYMLSRKYNKIADRRDDK-KGNLTEQD-SFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPF  593 (691)
Q Consensus       516 f~~ls~~~~~l~~~~~~~-~~~~~~~~-~~~~d~~~el~~~~~~L~~lLEiiNsiL~~~l~~Np~LVYalL~~r~~F~~l  593 (691)
                      |+.++||+.|+.++++.+ .+....++ +..+|+.+|++++++++||+||||||||++++++||||||++||||++||+|
T Consensus       514 f~lLtkkH~k~~~q~~~s~~~~v~~nvst~P~d~~qDl~vlEEviRm~LEIiNScLtn~L~hnpnLvY~LLYkR~lFe~f  593 (695)
T KOG2225|consen  514 FDLLTKKHAKMVDQMRVSSQNDVADNVSTQPIDFHQDLTVLEEVIRMLLEIINSCLTNGLRHNPNLVYNLLYKRALFEAF  593 (695)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccCCCCCchhhHhhHHHHHHHHHHHHHHHHHHhhCccccCchHHHHHHHHHHHHHHH
Confidence            999999999999988665 22222222 2346899999999999999999999999999999999999999999999999


Q ss_pred             ccCcchHHHHhhHHHHHHhhhhhhhhcccCCCCCHHHHHHHHHHhccccCCCCCCCchhHHHHHH
Q 005566          594 KSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCRSWRGDGLKVKADRFWMLL  658 (691)
Q Consensus       594 ~~~p~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~~I~~~~~~~~~~~l~~fp~l~~~~~  658 (691)
                      |+||+|||++|||+.|++||++|+.+-.  ....++++|++|.+++..||+|||+|||||||.-.
T Consensus       594 r~Hp~FQD~lqNId~V~~~fssk~~~V~--e~~g~~~~L~ii~k~a~~w~tdrl~kfpelkfryv  656 (695)
T KOG2225|consen  594 RQHPMFQDLLQNIDAVISHFSSKVIHVP--EGDGGSTMLQIIEKEANIWPTDRLAKFPELKFRYV  656 (695)
T ss_pred             hhChhHHHHHHHHHHHHHhhhhheeecc--ccccchhHHHHHhcccccCchhhhhhCcccceeee
Confidence            9999999999999999999999998733  23568999999999999999999999999999654


No 2  
>PF09742 Dymeclin:  Dyggve-Melchior-Clausen syndrome protein;  InterPro: IPR019142  Dymeclin (Dyggve-Melchior-Clausen syndrome protein) contains a large number of leucine and isoleucine residues and a total of 17 repeated dileucine motifs. It is characteristically about 700 residues long and present in plants and animals. In humans, mutations in the gene coding for this protein give rise to a disorder called Dyggve-Melchior-Clausen syndrome (DMC, MIM 223800), which is an autosomal-recessive disorder characterised by the association of spondylo-epi-metaphyseal dysplasia and mental retardation [].   This entry also includes Hid1 (high-temperature-induced dauer-formation protein 1) from Caenorhabditis elegans which encodes a novel highly conserved putative transmembrane protein expressed in neurons []. It contains up to seven potential transmembrane domains separated by regions of low complexity. Functionally this protein might be involved in vesicle secretion or be an inter-cellular signalling protein or be a novel insulin receptor []. 
Probab=100.00  E-value=2.8e-121  Score=1061.66  Aligned_cols=609  Identities=39%  Similarity=0.611  Sum_probs=537.5

Q ss_pred             CCCCCCcccccCCCCcchhHHHHHHhhCCccCC-CCchhHHHhhcCCCCCCCCch--------hhHHHHHHHHHhcCCCc
Q 005566            1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFP-LASDFWQKLLELPLSLHWPSH--------RVHQACEAFAQNNCYTR   71 (691)
Q Consensus         1 MG~~~Sk~~~~~~~~~~~n~~l~~~Ls~~~~I~-~~D~FW~qfws~p~s~~~p~d--------~l~~~~~~L~~nN~~t~   71 (691)
                      ||++.||.+     +++.|+++ ++++|+++|| .+|+||+|||++|.+..++.+        +++++||.+++||++||
T Consensus         1 MGa~~S~~~-----~l~~~~~l-~~l~g~~~i~~~~d~FW~qLlsf~~~~p~~s~d~~~ll~~~~~~~~~~L~~nN~~Tg   74 (678)
T PF09742_consen    1 MGASSSKEA-----KLSFNEAL-KRLVGEQPIPPDDDPFWNQLLSFSISPPTSSEDQFELLEEALEPLCQSLVPNNLATG   74 (678)
T ss_pred             CCCCcCCcc-----cchhHHHH-HHhcCCCCCCCcchHHHHHHHcccCCCCCChHHHHHHhHHHHHHHHHhhcccCcccc
Confidence            999999866     77889996 9999999999 667999999999665544433        67889999999999999


Q ss_pred             cHHHHHHHHHHHHHHhHhcCCCCchHHHHHHHHHHHHHHhhhheeecCChhhHHHhhcccCCCCC---CCc---------
Q 005566           72 HLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENFEELHLSLDESEP---LPK---------  139 (691)
Q Consensus        72 Nl~tLi~~l~~rL~~l~~~~~~~~~~~~qalNclriLtriLpyl~E~~~~~~~~~~fw~~~~~e~---~~~---------  139 (691)
                      |+++|++++.+|+.++..+++..+     ++||+||+||++||++|++++++|.++||+.++.+.   .+.         
T Consensus        75 n~~~Li~~~l~~~~el~~s~~~~~-----~~Nal~ilr~~lkyliE~~se~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~  149 (678)
T PF09742_consen   75 NFRALIRVFLSRLSELKASSECQD-----AINALFILRRFLKYLIENGSEEELLGHFWHPDPSEGSRPLASSLFSALSDL  149 (678)
T ss_pred             CHHHHHHHHHHHHhhhhcccchhH-----HHHHHHHHHHHHHHHhhcCCHHHHHHHHhcCCCcccccccccchhhhhccc
Confidence            999999999999999988876544     999999999999999999999999999999765511   000         


Q ss_pred             -----------------CcccchhhHHHHHHhhcccccccCCCchhhhHHHHHHHHHHHHhchhcCCCCCCCCCCCCchh
Q 005566          140 -----------------EFVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFI  202 (691)
Q Consensus       140 -----------------~f~~~~~ve~~lweagvg~~~svp~~~~t~~~h~EvlrlLLvllS~qLY~~~~~~~~~~~~~l  202 (691)
                                       +...++.+|++ |++||++++++|+++.||.+|+|++||||||+|+|||++++..+  .++|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l-~~alv~~i~~~p~~~~t~~lh~E~l~lLLvllS~qLy~~~~~~~--~~~~~  226 (678)
T PF09742_consen  150 LFCPDFTVMSKSEEGSESLSSEDSAEYL-LEALVGFIVSVPVNDATYALHLEALNLLLVLLSSQLYHPPSSEQ--SSPFL  226 (678)
T ss_pred             ccccchhhhccccccccccccccHHHHH-HHHhcccccCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCcccc--ccHHH
Confidence                             11235678877 99999999999999999999999999999999999999976554  79999


Q ss_pred             HhhhccCccchHHHHHHHHHhhhcCCCCCCCCCcccccccCCCCcchhhcccccccccccccccccccCCCCCCchHHHH
Q 005566          203 DAAMTEESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDC  282 (691)
Q Consensus       203 ~~~~~~~~~~al~Ll~SLL~n~i~~~~~p~~~~~y~~~~d~~~~gi~~~~gs~~~~~~~lPy~~l~~~~~~d~~~pL~~~  282 (691)
                      +++|+.+++++..++++||+|++.|.++|.+ .+|.+|+++.++|+++|+|+++|+.+...++ ...+..+++++||+++
T Consensus       227 ~~~~~~~s~~a~~l~~sLL~~~~~~~~~~~~-~~~~l~~~~~~~s~l~gi~s~~~s~l~~~~~-~~~~~~~~~~~pLa~~  304 (678)
T PF09742_consen  227 DSLMSSCSPHASALVRSLLNNFIRQDPVPPP-YTHLLFSDGSQGSILYGIASASWSLLDNFYG-SSPSSSEESRSPLANQ  304 (678)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhcCCcccc-cccccccCCCCchHHHHHHHHHHHHhhcccc-ccccCcccCcCCHHHH
Confidence            9999988999999999999999999998763 3566888999999999999999886633332 2334456889999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCcccCCCCCCCcccccccCCCCCCChHHHHhhccccccc--cccccCCCCC-CCCcccccc
Q 005566          283 SLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENARDIEF--GHMDLEGNAH-SGPVVRLPF  359 (691)
Q Consensus       283 slqlLlVLl~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~fr~~L~~~~D~~f--~~~~~~~~~~-~~~~~~i~f  359 (691)
                      |+|+||||++|+++.                        ....||||.++.++.|.++  ......+.+. ....++++|
T Consensus       305 SllLLLvL~~~~~~~------------------------~~~~Np~r~al~~~~d~~~~~~~~~~~~~~~~~~~~~~i~f  360 (678)
T PF09742_consen  305 SLLLLLVLVNHCSPP------------------------SSKGNPYREALFSFSDIQDEDFDFDSSGISSSLVNSFKINF  360 (678)
T ss_pred             HHHHHHHHHcCCCcc------------------------ccCCChHHHHHHhhhcchhccccccccccccccccceeecH
Confidence            999999999996641                        0268999999999998876  1112223222 234789999


Q ss_pred             hhHHHHhccccCchhHHHHHHHHhhcCccchhhhhcccchhhhHHHHHHHHHhcccC--CCCchHHHHHHHHHhcCCchh
Q 005566          360 ASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKK--TPNQIYMLLIILLILSQDSSF  437 (691)
Q Consensus       360 ~~l~~~l~~~~~~e~~~lLLy~Ll~~N~~F~~~vl~~~d~~~lv~piL~~ly~~~~~--~s~~v~m~l~ILLiLS~d~~F  437 (691)
                      ..||+++|+++.+++.++|||.|||.|++|++||++|+|++++|+|||+++|+++++  .+||+||++||||+||||++|
T Consensus       361 ~~L~~s~~~~~~~~~~~lLLY~LL~~N~~F~~~vls~~d~~~lv~piL~~ly~~~~~~~~~~~~~m~l~iLLiLSqd~~f  440 (678)
T PF09742_consen  361 TALYNSLCKSLSHDELLLLLYKLLHRNPNFLNYVLSRSDLDNLVLPILQILYDAREDFSNSHHIYMALIILLILSQDDSF  440 (678)
T ss_pred             HHHHHHHHHhhCCcchHHHHHHHHhcCHHHHHHHhcchhHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHHcCchHH
Confidence            999999999999999999999999999999999999999999999999999999999  889999999999999999999


Q ss_pred             hhhhcccccCCCccccccccccccchhHHHHHHHHHHhhccccccccccchhHHHHHhhcccccccCCHHHHHHHHHHHH
Q 005566          438 NASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFY  517 (691)
Q Consensus       438 ~~~ln~~~l~~i~w~~er~~~~~SlgdLlIlvl~r~I~~n~~~l~~~ylh~~cLa~LaN~sp~~~~Ls~~asqRLv~Lf~  517 (691)
                      |+++|+++++++|||+||.+.++|+|||+|+|++|+|++|+.|++|+|||++|||+|+|||||+++||+|||||||+||+
T Consensus       441 ~~~~~~~~~~~~~w~~er~~~~~Slg~Llvlvl~r~i~~n~~~~~d~~L~~~~la~LaN~sp~~~~l~~y~aqrLv~L~~  520 (678)
T PF09742_consen  441 NRSLHETIIKNVPWYTERSLFEISLGSLLVLVLIRTIQYNLSRLRDEYLHTNCLAILANMSPYFKSLHPYAAQRLVSLLE  520 (678)
T ss_pred             HHHhhhcccCCCCccccccccccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccHhhcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHhhhhccccCCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhHhhhccccccccccc--
Q 005566          518 MLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKS--  595 (691)
Q Consensus       518 ~ls~~~~~l~~~~~~~~~~~~~~~~~~~d~~~el~~~~~~L~~lLEiiNsiL~~~l~~Np~LVYalL~~r~~F~~l~~--  595 (691)
                      .++|||+|+++......++..+.    +   +.++++++++|+||||||+||+|++++||||||+|||+|++|+++++  
T Consensus       521 ~ls~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~lr~lleiins~L~~~l~~N~~LvY~ll~~r~~f~~~~~l~  593 (678)
T PF09742_consen  521 LLSKKYFKLSSQANHSSGSSRTS----D---DDLQVLEEVLRLLLEIINSILTYQLRHNPNLVYALLYKREVFEQLRNLD  593 (678)
T ss_pred             HHHHHHHHHHhhhhccccccccc----h---hhHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999988765433222221    1   23688999999999999999999999999999999999999999999  


Q ss_pred             ----CcchHHH-HhhHHHHHHhhhhhhhhcccCC-CCCHHHHHHHHHHhccccCCCCCCCchhHHHH
Q 005566          596 ----HPRFNEL-LENIYTVLDFFNSRLDAQRVDG-EWSVEKVLQSIIINCRSWRGDGLKVKADRFWM  656 (691)
Q Consensus       596 ----~p~f~~~-~~Ni~~vi~~f~~~l~~~~~~~-~~s~~~vl~~I~~~~~~~~~~~l~~fp~l~~~  656 (691)
                          ||.|+++ +|||++||+||++++++...++ ++|+++||++|+++++.|+++++||||+++|.
T Consensus       594 ~~~~~~~~~~~~l~ni~~vi~~f~~~v~~~~~~~~~~s~~~vl~~i~~~~~~~~~~~~~~~~~l~f~  660 (678)
T PF09742_consen  594 PVSIHPWFQDLPLQNIDRVIQFFSSRVESICADKGELSVSEVLEVIRKGTLVWPTDPLKKFPELKFK  660 (678)
T ss_pred             cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHhhhhcCCCCCCCCCCceEE
Confidence                9999999 9999999999999999855443 39999999999999999999999999999984


No 3  
>PF12722 Hid1:  High-temperature-induced dauer-formation protein
Probab=100.00  E-value=1.1e-83  Score=765.18  Aligned_cols=504  Identities=24%  Similarity=0.363  Sum_probs=416.7

Q ss_pred             CCCCCCcccccCCCCcchhHHHHHHhhCCccC--CCCch-hHHHhhcCCCCCCCCchhhHHH--HHHHHHhcCCCccHHH
Q 005566            1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSF--PLASD-FWQKLLELPLSLHWPSHRVHQA--CEAFAQNNCYTRHLAK   75 (691)
Q Consensus         1 MG~~~Sk~~~~~~~~~~~n~~l~~~Ls~~~~I--~~~D~-FW~qfws~p~s~~~p~d~l~~~--~~~L~~nN~~t~Nl~t   75 (691)
                      ||+++||++||        +++ .||++++.|  |.+|+ ||++||+.|++..+..+ +.+.  .+.++++|  +.||++
T Consensus         1 MG~sdsKl~fr--------~~i-~~L~~~~~~~~~~dd~~fw~~fw~~~~s~~Dvf~-Li~~~diR~ir~~~--~~Nl~t   68 (895)
T PF12722_consen    1 MGNSDSKLNFR--------KHI-FKLAQERIIVDPDDDAFFWDQFWELPTSAEDVFS-LISPADIRRIRDEN--PENLAT   68 (895)
T ss_pred             CCchhhHHHHH--------HHH-HHHcCCCcCCCCcccHHHHHHHHcCCCCHHHHHh-cCCHHHHHHHHHHC--HHHHHH
Confidence            99999999996        444 999999998  88887 99999999886554444 3333  34566777  599999


Q ss_pred             HHHHHHHHHHHhHhcCCCCc--hHHHHHHHHHHHHHHhhhheeecCChhhHHH-hhcccCCCC-----------------
Q 005566           76 ILIHLTWCLQECISSSGTAS--VAIMKAINAVYISSVFLKYLIENAESENFEE-LHLSLDESE-----------------  135 (691)
Q Consensus        76 Li~~l~~rL~~l~~~~~~~~--~~~~qalNclriLtriLpyl~E~~~~~~~~~-~fw~~~~~e-----------------  135 (691)
                      ||+++++|+++++++++.++  ...++++||+||||||+||+||....++|++ |||+.....                 
T Consensus        69 Li~~~~~~l~~~~~~~~~~~~~~~~~~~LNciRiLTRilP~i~E~~~~~~~~~~~fW~~~~~~~~~~~~~~~~~~~~~~~  148 (895)
T PF12722_consen   69 LIRKLVERLVQLANSPSFPSTPAPKQELLNCIRILTRILPFIFEADYDEEWEEEFFWSSRPKPSRGAQSASEVLFDEASS  148 (895)
T ss_pred             HHHHHHHHHHHHhcCccccccchhhhHHHHHHHHHHHhhhHhhcccccccchhccccCCCCccccccccccccccccccc
Confidence            99999999999999998643  3367999999999999999999666677987 999854221                 


Q ss_pred             -CCCc---C-------------cccc----------hhhHHHHHHhhcccccccCC-CchhhhHHHHHHHHHHHHhchhc
Q 005566          136 -PLPK---E-------------FVLD----------QNIENLVMHSVLSFIALVDV-SPHTYNLHQELLNFMLVAMSTQL  187 (691)
Q Consensus       136 -~~~~---~-------------f~~~----------~~ve~~lweagvg~~~svp~-~~~t~~~h~EvlrlLLvllS~qL  187 (691)
                       +.+.   .             |+++          ++++|.|||+|||+..+.+. +.+.++||+|++||||||+|++|
T Consensus       149 ~~~~~~~~pLg~~Ll~al~dLLF~~gFTv~~~~~~~~~~~~~iWe~GIg~~~~~~~~~~~~dsNR~EvLrLLLtl~S~~l  228 (895)
T PF12722_consen  149 EEDDEQSPPLGERLLDALVDLLFCPGFTVPSSSSSPDKVSYSIWEPGIGTNTSPPSPNKEHDSNRTEVLRLLLTLFSEPL  228 (895)
T ss_pred             cccccCCCCHHHHHHHHHHHHhCCCCCcCCCccCCCCccceeeccCccccCCCCCCCCHHHHHHHHHHHHHHHHHhchhh
Confidence             0000   0             3333          46678789999999999997 88999999999999999999999


Q ss_pred             CCCCCCCCCCCCchhHhhhccCc-cchHHHHHHHHHhhhcCCCCCCCCCcccccccCCC---Ccchhhcccccccccccc
Q 005566          188 LSVPSLGPKDVHPFIDAAMTEES-SLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQ---PGVLQRVGSAAATIVLLP  263 (691)
Q Consensus       188 Y~~~~~~~~~~~~~l~~~~~~~~-~~al~Ll~SLL~n~i~~~~~p~~~~~y~~~~d~~~---~gi~~~~gs~~~~~~~lP  263 (691)
                      |.+|+ .....++|+.++++... +.+++|+|||||+++++              ||.+   +|              +|
T Consensus       229 Y~~~~-~~~~~~~~l~~l~s~~~~~~~l~L~~SLlNt~~~y--------------~p~~~~~~~--------------lp  279 (895)
T PF12722_consen  229 YQPPS-LSSTGNKFLTYLVSCTPRQLVLTLLCSLLNTVCRY--------------DPSGNEEWG--------------LP  279 (895)
T ss_pred             cCCCc-cCCCCCeeeeeeccCcchhhhHHHHHHHHHHHHhc--------------CCCCccccc--------------cc
Confidence            99998 77779999999998764 45999999997776654              4444   45              89


Q ss_pred             cccccccCCCCCCchHHHHHHHHHHHHhhcCCCCCCCCCcccCCCCCCCcccccccCCCCCCChHHHHhhccc---cccc
Q 005566          264 FNYLVSSNGEGSSNPLTDCSLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENAR---DIEF  340 (691)
Q Consensus       264 y~~l~~~~~~d~~~pL~~~slqlLlVLl~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~fr~~L~~~~---D~~f  340 (691)
                      |++++++   |.+++||.+|+|+|+|+++|+.+..++.....        .  ........+|.||+||+++|   |++|
T Consensus       280 Y~~~~~~---d~r~~lV~~slQlL~vlL~y~~~~~~~~~~~~--------~--~~~~~~~~~N~~r~yl~~lhr~~D~~f  346 (895)
T PF12722_consen  280 YNHLVFS---DSREPLVTYSLQLLNVLLDYPPPSQTNSSFSS--------E--TNLTSSKPKNLFRNYLSKLHREEDFQF  346 (895)
T ss_pred             ccccccc---CcccHHHHHHHHHHHHheeCCCCCCCcccccc--------c--cCcCCCCcchHHHHHHhccCcHHHHHH
Confidence            9999988   99999999999999999999876432221110        0  00001347899999999885   9999


Q ss_pred             c---ccccCCCCC-----------------CCCcccccchhHHHHhccccCchhHHHHHHHHhhcCccchhhhhcccchh
Q 005566          341 G---HMDLEGNAH-----------------SGPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLD  400 (691)
Q Consensus       341 ~---~~~~~~~~~-----------------~~~~~~i~f~~l~~~l~~~~~~e~~~lLLy~Ll~~N~~F~~~vl~~~d~~  400 (691)
                      +   +.+++++|.                 |++.+++.|+           +| ++||||+|+++||+|++||++ .++.
T Consensus       347 i~~gl~~iL~~pl~~~~~~es~~f~~~~~lp~s~~~~~~~-----------~e-~l~l~W~l~~~Nk~F~~~v~~-~~~~  413 (895)
T PF12722_consen  347 ILDGLTRILNNPLQSAIEQESNPFSSSSYLPGSQKPSPWA-----------QE-LLMLFWELIQCNKRFRNYVLD-KRAL  413 (895)
T ss_pred             HHHHHHHHHHhhhhhhhhccccccccccccccccccchHH-----------HH-HHHHHHHHHhhCHHHHHHHhh-ccHH
Confidence            8   445555552                 5678888887           55 999999999999999999999 9999


Q ss_pred             hhHHHHHHHHHhcccCCC--CchHHHHHHHHHhcCCchhhhhhcccccC----CCccccccccccccchhHHHHHHHHHH
Q 005566          401 TLLMPILETLYNASKKTP--NQIYMLLIILLILSQDSSFNASIHKMILP----SVPWYKEHLLHQTSLGSLLVIILIRTV  474 (691)
Q Consensus       401 ~lv~piL~~ly~~~~~~s--~~v~m~l~ILLiLS~d~~F~~~ln~~~l~----~i~w~~er~~~~~SlgdLlIlvl~r~I  474 (691)
                      ++++|+|+++.+.+.+++  +.|+||+||||+||+++.||++||+++-.    .+|-+..=....|||+||+|+++|++|
T Consensus       414 ~llv~llyy~~~~~~~~~~~glv~i~~fill~LS~e~~f~~~Ln~p~~~~~~~~lP~~~~i~~~~gT~~DflI~~i~~ii  493 (895)
T PF12722_consen  414 DLLVPLLYYLLEYRDDPSKQGLVRICSFILLYLSSERNFGVKLNKPFSAYYQNSLPNSFKIPVFPGTYADFLIISICNII  493 (895)
T ss_pred             HHHHHHHHHHHHhcCChhhcccHHHHHHHHHHHccchHHHHHhccccchhhcccCCCccccCCCCCcHHHHHHHHHHHHH
Confidence            999999999999988875  66899999999999999999999999854    455221112238999999999999999


Q ss_pred             hhccccccccccchhH-HHHHhhcccc---------cccCCHHHHHHHHHHHHHHHHhHHHhhhhccccCCCCCCCCchh
Q 005566          475 KYNLSKLRDVYLHTTC-LATLANMAPH---------VHRLSAYASQRLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFA  544 (691)
Q Consensus       475 ~~n~~~l~~~ylh~~c-La~LaN~sp~---------~~~Ls~~asqRLv~Lf~~ls~~~~~l~~~~~~~~~~~~~~~~~~  544 (691)
                      ..+.+++...|   +| +++|+|+|||         +++||+.||.||++||+.||+|.+++++                
T Consensus       494 ~~~~~~~~~l~---~~l~~il~Ni~p~~~s~~~~~~~~~LS~~as~~L~~L~~~~S~p~fL~~~----------------  554 (895)
T PF12722_consen  494 TTSHGRLSSLY---PCLLEILYNISPYTLSSKKSSNLKGLSYVASSKLLQLFSKFSSPSFLLSN----------------  554 (895)
T ss_pred             hcCCcccccHH---HHHHHHHHhcccccccchhhhhhcCcCHHHHHHHHHHHHHhcChHHHhcC----------------
Confidence            99999999999   77 9999999999         9999999999999999999999887752                


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhHhhhcccccccccccCc
Q 005566          545 EDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHP  597 (691)
Q Consensus       545 ~d~~~el~~~~~~L~~lLEiiNsiL~~~l~~Np~LVYalL~~r~~F~~l~~~p  597 (691)
                           +.|  +++|++|||+||++++||+.+|++|||+|+|+|++|+++++.+
T Consensus       555 -----~~n--~~ll~~LL~a~n~~i~~~~~~n~~Lvyailr~~~~f~~L~~~~  600 (895)
T PF12722_consen  555 -----EFN--HDLLALLLEAFNNIIQYQFSGNPNLVYAILRNRKVFEQLRNFT  600 (895)
T ss_pred             -----Cch--HHHHHHHHHHHHHHHHhccccchHHHHHHHhhHHHHHHHHHhh
Confidence                 122  5899999999999999999999999999999999999999854


No 4  
>KOG2226 consensus Proteins containing regions of low-complexity [General function prediction only]
Probab=100.00  E-value=1.1e-81  Score=689.85  Aligned_cols=498  Identities=21%  Similarity=0.299  Sum_probs=413.5

Q ss_pred             CCCCCCcccccCCCCcchhHHHHHHhhCCccCCCCchhHHHhhcCCCCCCCCch-hhHHHHHHHHHhcCCCccHHHHHHH
Q 005566            1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSH-RVHQACEAFAQNNCYTRHLAKILIH   79 (691)
Q Consensus         1 MG~~~Sk~~~~~~~~~~~n~~l~~~Ls~~~~I~~~D~FW~qfws~p~s~~~p~d-~l~~~~~~L~~nN~~t~Nl~tLi~~   79 (691)
                      ||+.+||++||         +.|.|++ .+.||.+|.||+|+|+.|++..+..+ -..+-.+..+.|+  +.|++||+++
T Consensus         1 MGsqeSKl~Fr---------~aIlrl~-q~~~p~ddeiWe~lWt~peT~~dVF~~i~~~dIR~~RD~a--p~NLatLl~v   68 (786)
T KOG2226|consen    1 MGSQESKLDFR---------HAILRLT-QKNIPEDDEIWEQLWTCPETENDVFAFISAQDIRKCRDNA--PDNLATLLYV   68 (786)
T ss_pred             CCcccccchHH---------HHHHHHh-cCCCCcHHHHHHHHhcCCCcchHHHHhcCHHHHHHHhhcC--hHHHHHHHHH
Confidence            99999999995         4468888 88899999999999999997665554 1112234566666  6999999999


Q ss_pred             HHHHHHHhHhcCCCCchH-HHHHHHHHHHHHHhhhheeecCChhhHHHhhcccCCCCCC---Cc------C-----cc--
Q 005566           80 LTWCLQECISSSGTASVA-IMKAINAVYISSVFLKYLIENAESENFEELHLSLDESEPL---PK------E-----FV--  142 (691)
Q Consensus        80 l~~rL~~l~~~~~~~~~~-~~qalNclriLtriLpyl~E~~~~~~~~~~fw~~~~~e~~---~~------~-----f~--  142 (691)
                      +++||+.+.+...++... ...|+||+|+|||++||++|..+.++|.++||...++.++   |.      +     |+  
T Consensus        69 ~v~kL~~lqn~~~~p~~~~~~~aLNciRLLTRllPyl~E~~~~~eW~~~Fw~slpk~~d~~~PL~~~llns~~dLlf~~d  148 (786)
T KOG2226|consen   69 LVEKLVSLQNKFSEPATAKQKCALNCIRLLTRLLPYLFESTNDEEWRDYFWWSLPKTVDDLKPLAASLLNSFSDLLFLPD  148 (786)
T ss_pred             HHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHhccccHHHHHHHhhhcCcCCCCccCchhHHHHHHHhhhhhccc
Confidence            999999999877544333 6689999999999999999999999999988876653211   11      0     11  


Q ss_pred             ------------------cchhhHHHHHHhhcccccccCCCchhhhHHHHHHHHHHHHhchhcCCCCCCCCCCCCchhHh
Q 005566          143 ------------------LDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFIDA  204 (691)
Q Consensus       143 ------------------~~~~ve~~lweagvg~~~svp~~~~t~~~h~EvlrlLLvllS~qLY~~~~~~~~~~~~~l~~  204 (691)
                                        ..+.|||+ ||+|||+....|.+...+.+|+|++|+||||+|+.||...+..  ..+.|..+
T Consensus       149 fTi~~~~~~~~~~~k~~~siesC~~I-WEaGVg~~et~~~~~~~~~~R~EvLrLLL~lfSe~lY~rsdE~--~ss~~~~~  225 (786)
T KOG2226|consen  149 FTITLCFQHNFTKIKELSSIESCEYI-WEAGVGIPETPPKPAYDERHRTEVLRLLLVLFSETLYDRSDEL--DSSVLNYI  225 (786)
T ss_pred             cchhhhhhcCcchhhhhcchhHHHHH-HhcccCCCCCCCCchHHHHHHHHHHHHHHHHhhHHHHhccccc--CceeEEEE
Confidence                              13467766 9999999988888777778999999999999999999533222  25678888


Q ss_pred             hhccCccchHHHHHHHHHhhhcCCCCCCCCCcccccccCCCCcchhhcccccccccccccccccccCCCCCCchHHHHHH
Q 005566          205 AMTEESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDCSL  284 (691)
Q Consensus       205 ~~~~~~~~al~Ll~SLL~n~i~~~~~p~~~~~y~~~~d~~~~gi~~~~gs~~~~~~~lPy~~l~~~~~~d~~~pL~~~sl  284 (691)
                      ++...++++++++|||+|++++          |    ||.++|              .|||++.++   |+..+|++.|+
T Consensus       226 ~s~ank~lvL~ll~SliNT~~~----------~----~p~~~~--------------~~yn~l~~s---ds~~sLve~~~  274 (786)
T KOG2226|consen  226 FSSANKRLVLPLLTSLINTVCR----------Y----DPVGWK--------------NSYNQLLNS---DSLESLVEYCL  274 (786)
T ss_pred             EEecCCceeehhhHHhhhhhee----------c----cccccc--------------ccccccccc---chhhhHHHHHH
Confidence            8878899999999999777765          4    666666              799998888   99999999999


Q ss_pred             HHHHHHhhcCCCCCCCCCcccCCCCCCCcccccccCCCCCCChHHHHhhccc---ccccc---ccccCCCCC-------C
Q 005566          285 LVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENAR---DIEFG---HMDLEGNAH-------S  351 (691)
Q Consensus       285 qlLlVLl~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~fr~~L~~~~---D~~f~---~~~~~~~~~-------~  351 (691)
                      |+|||+++|..-+...++   .+..++.        ....+|.|+.|++|+|   ||+|+   ++|+++||.       |
T Consensus       275 qiLli~lDh~~~e~t~~y---~~~r~s~--------g~~~kN~f~~ylSrlhr~~DF~fil~gi~RLL~nPl~s~s~yi~  343 (786)
T KOG2226|consen  275 QILLILLDHRIKENTHLY---QNGRSSE--------GQHIKNYFINYLSRLHRTEDFLFILKGITRLLSNPLKSESQYIP  343 (786)
T ss_pred             HHHHHhhccccccCceec---cCCcCCC--------ccchhhHHHHHHHHhccchhHHHHHHHHHHHhcchhhccccccc
Confidence            999999998664322111   1111111        1247899999999996   99998   688899983       4


Q ss_pred             CCcccccchhHHHHhccccCchhHHHHHHHHhhcCccchhhhhcccchhhhHHHHHHHHHhcccCC--CCchHHHHHHHH
Q 005566          352 GPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKT--PNQIYMLLIILL  429 (691)
Q Consensus       352 ~~~~~i~f~~l~~~l~~~~~~e~~~lLLy~Ll~~N~~F~~~vl~~~d~~~lv~piL~~ly~~~~~~--s~~v~m~l~ILL  429 (691)
                      .+++...|+           +| .+++||.+|+.|++|+.|+++..++.++++|||.+....+.|+  ++++.||+|||+
T Consensus       344 ~s~k~~~~~-----------~E-~Liflw~~i~yNkrF~~~li~t~~a~d~li~iLy~~~~yr~D~~~~gl~~l~vfil~  411 (786)
T KOG2226|consen  344 NSTKRKRCH-----------PE-LLIFLWLLITYNKRFTDYLIKTSDALDILIPILYHHVKYRGDTERSGLSHLCVFILL  411 (786)
T ss_pred             ccchhhhhh-----------HH-HHHHHHHHHhccHHHHHHHhcCccHHHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence            567777777           55 9999999999999999999999999999999999998888876  477789999999


Q ss_pred             HhcCCchhhhhhcccc---cC-CCccccccccccccchhHHHHHHHHHHhhccccccccccchhH-HHHHhhcccccccC
Q 005566          430 ILSQDSSFNASIHKMI---LP-SVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTC-LATLANMAPHVHRL  504 (691)
Q Consensus       430 iLS~d~~F~~~ln~~~---l~-~i~w~~er~~~~~SlgdLlIlvl~r~I~~n~~~l~~~ylh~~c-La~LaN~sp~~~~L  504 (691)
                      .||+|++||+++|+..   .+ .+|.+      .|||+||+|++++++|++|..++...+   +| |.+|+|++||+++|
T Consensus       412 ~Ls~Ek~f~~rLNk~~sl~~sl~vp~~------~gt~AdllIi~~~~li~~~~~~~s~l~---~~ll~ii~Ni~py~~nL  482 (786)
T KOG2226|consen  412 LLSGEKNFCKRLNKAYSLDKSLIVPVP------TGTYADLLIIVIHKLIAYGKDRLSELF---DCLLTIICNISPYIKNL  482 (786)
T ss_pred             HHhhhHHHHHHhcccccccccCCCCCC------CCcccceeEeehhhhhhhcccccchHH---HHHHHHHHhhhhhhccc
Confidence            9999999999999955   22 56776      999999999999999999999999999   99 99999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhHHHhhhhccccCCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhHhhh
Q 005566          505 SAYASQRLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAIL  584 (691)
Q Consensus       505 s~~asqRLv~Lf~~ls~~~~~l~~~~~~~~~~~~~~~~~~~d~~~el~~~~~~L~~lLEiiNsiL~~~l~~Np~LVYalL  584 (691)
                      +++||+|||+|++++|+|+|+++++.                  |     +.++.+|||+||+++|||+++|+||+|.|+
T Consensus       483 s~v~a~kl~eL~ss~S~P~FL~snp~------------------N-----h~ll~~LL~afnniiqy~F~~N~nLiY~ii  539 (786)
T KOG2226|consen  483 SMVAASKLVELISSFSTPWFLFSNPQ------------------N-----HSLLKYLLEAFNNIIQYQFDGNSNLIYTII  539 (786)
T ss_pred             chhhhHHHHHHHHHhcCchhhccCCC------------------c-----HHHHHHHHHHHHHHHHHhhcCCcchhhHHH
Confidence            99999999999999999999886421                  3     479999999999999999999999999999


Q ss_pred             cccccccccccCcch
Q 005566          585 HREEVFQPFKSHPRF  599 (691)
Q Consensus       585 ~~r~~F~~l~~~p~f  599 (691)
                      |+|++|+++.+.+..
T Consensus       540 r~k~vF~~l~als~d  554 (786)
T KOG2226|consen  540 RKKRVFEALSALSTD  554 (786)
T ss_pred             HHHHHHHHHhhcCch
Confidence            999999999987743


No 5  
>PF08427 DUF1741:  Domain of unknown function (DUF1741);  InterPro: IPR013636 This is a eukaryotic domain of unknown function. 
Probab=97.70  E-value=0.00018  Score=74.58  Aligned_cols=185  Identities=18%  Similarity=0.311  Sum_probs=120.4

Q ss_pred             cccchhHHHHHHHHHHhhccccccccccchhHHHHHhhcccccccCCHHHHHHHHHHHHHHHH--hHHHhhhhccccCCC
Q 005566          459 QTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSR--KYNKIADRRDDKKGN  536 (691)
Q Consensus       459 ~~SlgdLlIlvl~r~I~~n~~~l~~~ylh~~cLa~LaN~sp~~~~Ls~~asqRLv~Lf~~ls~--~~~~l~~~~~~~~~~  536 (691)
                      .-+++--+.=+++-.|.+|+.|--|+-++.-|+.++-.+=.|.+.=..--.=.=--|+.+|-+  ||....  .      
T Consensus         6 ~rpla~~iLD~~i~~i~~NL~k~l~v~lY~~~l~ii~Rll~y~~~~~~RL~Y~W~eLW~aLlsLl~Fl~~~--~------   77 (237)
T PF08427_consen    6 SRPLATAILDLMIEFIRHNLRKRLDVDLYSLCLGIIHRLLCYLKRSRIRLEYHWSELWRALLSLLRFLTTY--E------   77 (237)
T ss_pred             CCchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhc--h------
Confidence            344555666667778889998777777778999999888887763321111111234444444  333110  0      


Q ss_pred             CCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcC------CCCcchhHhhhccccccccccc----Cc---------
Q 005566          537 LTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYAL------PRNPEVVYAILHREEVFQPFKS----HP---------  597 (691)
Q Consensus       537 ~~~~~~~~~d~~~el~~~~~~L~~lLEiiNsiL~~~l------~~Np~LVYalL~~r~~F~~l~~----~p---------  597 (691)
                              .|..+ ..-...++.-++.+||=+|.+.-      ..=.+|.|.|+|..++|+.|+.    +.         
T Consensus        78 --------~~l~~-~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~~~~~~~~~~~~~~  148 (237)
T PF08427_consen   78 --------SDLKD-SPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMYLRSSTSSSSEYKD  148 (237)
T ss_pred             --------hhhhc-ccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHHhhccCCCcccccc
Confidence                    00000 01123788889999999999854      3345799999999999998875    21         


Q ss_pred             ---chHHHHhhHHHHHHhhhhhhhh---cccCCCCCHHHHHHHHHHhcccc---CCCCCC---CchhHHHHHHhh
Q 005566          598 ---RFNELLENIYTVLDFFNSRLDA---QRVDGEWSVEKVLQSIIINCRSW---RGDGLK---VKADRFWMLLFK  660 (691)
Q Consensus       598 ---~f~~~~~Ni~~vi~~f~~~l~~---~~~~~~~s~~~vl~~I~~~~~~~---~~~~l~---~fp~l~~~~~~~  660 (691)
                         ....-+.||..|++||+.++++   +.....+|.++|+++||++=...   ..|+|.   |+-|-.+...||
T Consensus       149 ~~~~~~~sl~nl~~I~~Hf~~ki~~~~~~~~~~~lt~~qV~~VIk~~YdtLsl~~~e~Ld~~ery~E~~~~~~~k  223 (237)
T PF08427_consen  149 SSDKLTNSLDNLRSIISHFESKIEEWSAANKKSNLTPEQVLEVIKQNYDTLSLKLQEGLDQWERYREAPEKSFLK  223 (237)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHhCccceecchhhccccccccccCchHHHHH
Confidence               1236799999999999999985   22345789999999999976543   555555   444444555554


No 6  
>KOG4654 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.85  E-value=0.027  Score=55.86  Aligned_cols=101  Identities=19%  Similarity=0.319  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHhhcC------CCCcchhHhhhcccccccccccC-----------cc----hHHHHhhHHHHHHhhh
Q 005566          556 DFLRIVLEILNAILTYAL------PRNPEVVYAILHREEVFQPFKSH-----------PR----FNELLENIYTVLDFFN  614 (691)
Q Consensus       556 ~~L~~lLEiiNsiL~~~l------~~Np~LVYalL~~r~~F~~l~~~-----------p~----f~~~~~Ni~~vi~~f~  614 (691)
                      ++..+++..+|-+|+|..      +.=.+|-|.|+|-++-|+.|.+-           |.    .-..+.||..||+||+
T Consensus        99 ~La~lIldlf~mfIs~GDafl~~pde~ddLfYeii~mhknFdn~~S~vlrlstnagq~kdaaskv~~AL~ni~aiiehfn  178 (252)
T KOG4654|consen   99 RLAELILDLFAMFISNGDAFLIRPDELDDLFYEIIHMHKNFDNFSSKVLRLSTNAGQIKDAASKVLGALNNILAIIEHFN  178 (252)
T ss_pred             HHHHHHHHHHHHHHhCCCeeeeCchHHHHHHHHHHHHhcchhhHHHHHHHhccccccCchHHHHHHHHHHHHHHHHHhcC
Confidence            788899999999999854      45567899999999999977652           21    1246899999999999


Q ss_pred             hhhhh-ccc--CCCCCHHHHHHHHHHhccccC------CCCCCCchhHHHH
Q 005566          615 SRLDA-QRV--DGEWSVEKVLQSIIINCRSWR------GDGLKVKADRFWM  656 (691)
Q Consensus       615 ~~l~~-~~~--~~~~s~~~vl~~I~~~~~~~~------~~~l~~fp~l~~~  656 (691)
                      .++++ +..  =...|.++|+++||.+-.+.|      =|+...|-|-+-.
T Consensus       179 pKiedyaavnhi~qlsadeV~eVikae~dsi~la~Qd~~d~~e~fkEqhke  229 (252)
T KOG4654|consen  179 PKIEDYAAVNHIPQLSADEVEEVIKAELDSIPLAKQDAFDGVEPFKEQHKE  229 (252)
T ss_pred             chhhhHHHhcccccccHHHHHHHHHHhccccchhhhccccCCCcchHHHHH
Confidence            99987 211  235799999999999876654      3445566666655


No 7  
>PF03224 V-ATPase_H_N:  V-ATPase subunit H;  InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include:   F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP.   V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=41.37  E-value=1.4e+02  Score=32.19  Aligned_cols=123  Identities=18%  Similarity=0.211  Sum_probs=72.5

Q ss_pred             HHHHHHHHhhcCccchhhhhcccchhhhHHHHHHHHHhcccCCC---CchHHHHHHHHHhcCCchhhhhhcccccCCCcc
Q 005566          375 AVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTP---NQIYMLLIILLILSQDSSFNASIHKMILPSVPW  451 (691)
Q Consensus       375 ~~lLLy~Ll~~N~~F~~~vl~~~d~~~lv~piL~~ly~~~~~~s---~~v~m~l~ILLiLS~d~~F~~~ln~~~l~~i~w  451 (691)
                      .++-...-+=.++.+|..+.+...+ ..+.++|.  -.+..+++   +..|=+++++-.||=++.....+++..      
T Consensus       169 ~av~~L~~LL~~~~~R~~f~~~~~v-~~l~~iL~--~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~------  239 (312)
T PF03224_consen  169 IAVQCLQNLLRSKEYRQVFWKSNGV-SPLFDILR--KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY------  239 (312)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHTHHHH-HHHHHHHH-----------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS------
T ss_pred             HHHHHHHHHhCcchhHHHHHhcCcH-HHHHHHHH--hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc------
Confidence            3444444445899999999983222 33334443  11112222   334778999999998888888776533      


Q ss_pred             ccccccccccchhHHHHHHHHHHhhccccccccccchhHHHHHhhcccccc--cCCHHHHHHHHHHHHHHHHhHH
Q 005566          452 YKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVH--RLSAYASQRLVSLFYMLSRKYN  524 (691)
Q Consensus       452 ~~er~~~~~SlgdLlIlvl~r~I~~n~~~l~~~ylh~~cLa~LaN~sp~~~--~Ls~~asqRLv~Lf~~ls~~~~  524 (691)
                                    +|..++.++.... |-+-+=   -|++++-|+...-.  ....-.-.++..+++.|+.|-+
T Consensus       240 --------------~i~~L~~i~~~~~-KEKvvR---v~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~  296 (312)
T PF03224_consen  240 --------------LIPLLADILKDSI-KEKVVR---VSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKW  296 (312)
T ss_dssp             --------------HHHHHHHHHHH---SHHHHH---HHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--
T ss_pred             --------------hHHHHHHHHHhcc-cchHHH---HHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCC
Confidence                          3445555555433 222111   47999999998887  5555666788888888888543


No 8  
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.45  E-value=1.5e+02  Score=35.97  Aligned_cols=213  Identities=17%  Similarity=0.228  Sum_probs=115.5

Q ss_pred             HHHHHHHHhhcCccchhhhhcccchhhhHHHHHHHHHhcccCCCCchHHHHHHHHHhcCCchhhhhhcccccCCCccccc
Q 005566          375 AVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDSSFNASIHKMILPSVPWYKE  454 (691)
Q Consensus       375 ~~lLLy~Ll~~N~~F~~~vl~~~d~~~lv~piL~~ly~~~~~~s~~v~m~l~ILLiLS~d~~F~~~ln~~~l~~i~w~~e  454 (691)
                      .+=|||.+|+           ++++..+|--+|++|-.++..-  +--|.+ =.-          -+-+.+.+|..||  
T Consensus       389 avDLLY~mcD-----------~~Nak~IV~elLqYL~tAd~si--reeivl-KvA----------ILaEKyAtDy~Wy--  442 (938)
T KOG1077|consen  389 AVDLLYAMCD-----------VSNAKQIVAELLQYLETADYSI--REEIVL-KVA----------ILAEKYATDYSWY--  442 (938)
T ss_pred             HHHHHHHHhc-----------hhhHHHHHHHHHHHHhhcchHH--HHHHHH-HHH----------HHHHHhcCCcchh--
Confidence            4457776654           5677788888888887755432  111211 111          2345678899999  


Q ss_pred             cccccccchhHHHHHHHHHHhhccccccccccchhHHHHHhhcccccccCCHHHHHHHHHHHHHHHHhHHHhhhhccccC
Q 005566          455 HLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNKIADRRDDKK  534 (691)
Q Consensus       455 r~~~~~SlgdLlIlvl~r~I~~n~~~l~~~ylh~~cLa~LaN~sp~~~~Ls~~asqRLv~Lf~~ls~~~~~l~~~~~~~~  534 (691)
                                  |.|+..+|.-.-.-..|---|.-|-.+..     =+.++.|||.|+..   .|-++--          
T Consensus       443 ------------VdviLqLiriagd~vsdeVW~RvvQiVvN-----nedlq~yaak~~fe---~Lq~~a~----------  492 (938)
T KOG1077|consen  443 ------------VDVILQLIRIAGDYVSDEVWYRVVQIVVN-----NEDLQGYAAKRLFE---YLQKPAC----------  492 (938)
T ss_pred             ------------HHHHHHHHHHhcccccHHHHHHhheeEec-----chhhhHHHHHHHHH---HHhhhHH----------
Confidence                        34444444322111112111222222333     37899999998754   4444321          


Q ss_pred             CCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhHhhhccccccccccc-----------CcchHHHH
Q 005566          535 GNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKS-----------HPRFNELL  603 (691)
Q Consensus       535 ~~~~~~~~~~~d~~~el~~~~~~L~~lLEiiNsiL~~~l~~Np~LVYalL~~r~~F~~l~~-----------~p~f~~~~  603 (691)
                                    .| + ...+--++|-=+.++|+.+-+.-|--.++++|.+=-.-+-.+           .-.|.|+=
T Consensus       493 --------------hE-~-mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PEi~  556 (938)
T KOG1077|consen  493 --------------HE-N-MVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPEIK  556 (938)
T ss_pred             --------------HH-H-HHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChhhh
Confidence                          00 0 113445667778888999888888888999886633322111           01223455


Q ss_pred             hhHHHHHHhhhhhhhhcccCCCCCHHHHHHHHHHhccc---cCCCCCCCchhHHHHHHhhhh
Q 005566          604 ENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCRS---WRGDGLKVKADRFWMLLFKLG  662 (691)
Q Consensus       604 ~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~~I~~~~~~---~~~~~l~~fp~l~~~~~~~~~  662 (691)
                      .||..|..-++.-++-+-+   .-.-+.|+.++.+...   -==+-|.+|||-.--+|-|+|
T Consensus       557 ~~v~~vFq~~~n~~D~ElQ---qRa~EYLql~k~as~dvL~~vleeMPpF~er~ssll~kl~  615 (938)
T KOG1077|consen  557 SNVQKVFQLYSNLIDVELQ---QRAVEYLQLSKLASTDVLQTVLEEMPPFPERESSLLKKLK  615 (938)
T ss_pred             HHHHHHHHhhcccCCHHHH---HHHHHHHHHHHhccchHHHHHHhhCCCCccccchHHHHhh
Confidence            5555555555544332110   0123566666666432   122457789998888888877


No 9  
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=25.79  E-value=64  Score=30.95  Aligned_cols=86  Identities=14%  Similarity=0.213  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCcchhHhhhccccccccccc---CcchHHHHhhHHHHHHhhhhhhhhcc-cCCCCCHHHH
Q 005566          556 DFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKS---HPRFNELLENIYTVLDFFNSRLDAQR-VDGEWSVEKV  631 (691)
Q Consensus       556 ~~L~~lLEiiNsiL~~~l~~Np~LVYalL~~r~~F~~l~~---~p~f~~~~~Ni~~vi~~f~~~l~~~~-~~~~~s~~~v  631 (691)
                      ..+..+-.+.+++=+...   ++-++.|-|-.+.|..|+.   +..-.++-+|++.+-+|+..||.+.. ...+.=.++|
T Consensus        30 g~l~~l~~A~~aie~~~i---~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY~y~~~rL~~ANl~nd~~~i~eV  106 (132)
T COG1516          30 GALKFLKRAKEAIEQEDI---EEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALYDYMVRRLVQANLKNDASKIDEV  106 (132)
T ss_pred             HHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence            334444444444433333   3678888888899988876   34558999999999999999997632 2334457788


Q ss_pred             HHHHHHhccccCC
Q 005566          632 LQSIIINCRSWRG  644 (691)
Q Consensus       632 l~~I~~~~~~~~~  644 (691)
                      ..+++.-...|..
T Consensus       107 ~~ll~~l~eaW~e  119 (132)
T COG1516         107 IGLLRELREAWKE  119 (132)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888888853


No 10 
>COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]
Probab=20.71  E-value=1e+02  Score=28.19  Aligned_cols=56  Identities=16%  Similarity=0.121  Sum_probs=35.2

Q ss_pred             cCCCCchhHHHhhcCCCCCCCCchhhHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhHh
Q 005566           31 SFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNNCYTRHLAKILIHLTWCLQECIS   89 (691)
Q Consensus        31 ~I~~~D~FW~qfws~p~s~~~p~d~l~~~~~~L~~nN~~t~Nl~tLi~~l~~rL~~l~~   89 (691)
                      ++...++||+.+-+.-..-.-   .+-.+...+-+.-+..+||...+++.+-|=-....
T Consensus        28 S~rLE~~FW~~L~eIA~~r~l---t~a~LIaei~d~r~~~~NlsSaLRV~clr~L~~~~   83 (102)
T COG4321          28 SVRLENPFWDILKEIAERRKL---TVAALIAEIDDERGRDGNLSSALRVCCLRWLKLRL   83 (102)
T ss_pred             eEeehhHHHHHHHHHHHhcCC---cHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhc
Confidence            477889999998876221011   13333334545566789999999987766444433


Done!