Query 005566
Match_columns 691
No_of_seqs 184 out of 237
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 18:17:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005566.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2074-2078//hhsearch_pdb/005566hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kk4_A Uncharacterized protein 1.0 1 1 13.7 2.5 82 31-115 31-118 (125)
2 3p8c_B NCK-associated protein 1.0 1 1 12.8 5.3 18 108-125 207-225 (1128)
3 3c18_A Nucleotidyltransferase- 1.0 1 1 12.8 2.0 63 554-616 201-266 (290)
4 2k0d_X IMME7, colicin-E7 immun 1.0 1 1 11.2 4.6 79 555-648 20-99 (101)
5 1zoq_C CREB-binding protein, i 1.0 1 1 11.2 -0.5 17 573-589 26-42 (47)
6 2kz3_A Putative uncharacterize 1.0 1 1 11.2 -0.7 36 605-640 24-59 (83)
7 1kbh_B CREB-binding protein, n 1.0 1 1 11.1 -0.2 17 573-589 33-49 (59)
8 1lyp_A CAP18; lipopolysacchari 1.0 1 1 10.8 0.7 25 647-671 6-30 (32)
9 2fm9_A Cell invasion protein S 1.0 1 1 10.7 3.9 130 420-565 73-213 (215)
10 4fqn_A Malcavernin; helical do 1.0 1 1 10.6 -0.6 21 24-44 67-89 (98)
No 1
>3kk4_A Uncharacterized protein BP1543; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: CME; 1.95A {Bordetella pertussis tohama I}
Probab=1.00 E-value=1 Score=13.66 Aligned_cols=82 Identities=20% Similarity=0.149 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH--HHHHHHH
Q ss_conf 579995368984037788889841139999999----8735897408999999999999967258997068--9999999
Q 005566 31 SFPLASDFWQKLLELPLSLHWPSHRVHQACEAF----AQNNCYTRHLAKILIHLTWCLQECISSSGTASVA--IMKAINA 104 (691)
Q Consensus 31 ~I~~~D~FW~qlws~p~s~~~p~d~l~~~~~~L----~~nN~~t~Nl~tLi~~l~~rL~~l~~~~~~~~~~--~~qalNc 104 (691)
+|...++||+-|=+.-. ..-. .+-.++..+ .+.....+||+..+|+++-+-........-|... .--.+|+
T Consensus 31 SIrLE~~FW~~L~eIA~--~~g~-tv~~Lia~I~~E~~d~~~~~~NlaSalRV~~L~yl~~~a~g~~p~~~~~~i~~l~a 107 (125)
T 3kk4_A 31 SVRLEQLFWDVLEEIAA--RDGM-RVTQLIERLYDELVQYRGEAANFTSFLRVCCLRYQVLQAEGRIPADATVPIRSLDA 107 (125)
T ss_dssp EEEEEHHHHHHHHHHHH--HTTC-CHHHHHHHHHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHTTSSCSCTTSCGGGSCH
T ss_pred EEEHHHHHHHHHHHHHH--HCCC-CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 33120999999999999--8499-89999999999999846899983899999999999987457898555555655688
Q ss_pred HHHHHHHHHHE
Q ss_conf 99999731020
Q 005566 105 VYISSVFLKYL 115 (691)
Q Consensus 105 lrILtriLpyl 115 (691)
=.||...-+..
T Consensus 108 ~~~l~~~~~~~ 118 (125)
T 3kk4_A 108 QAVLRGLPANL 118 (125)
T ss_dssp HHHHTTCCGGG
T ss_pred HHHHHCCCCCC
T ss_conf 89986174011
No 2
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=1.00 E-value=1 Score=12.81 Aligned_cols=18 Identities=6% Similarity=0.041 Sum_probs=6.3
Q ss_pred HHHHHHHEEE-CCCHHHHH
Q ss_conf 9973102013-48811289
Q 005566 108 SSVFLKYLIE-NAESENFE 125 (691)
Q Consensus 108 LtriLpyl~E-~~~~~~~~ 125 (691)
|..+-|++.. ..+.++|+
T Consensus 207 L~Sl~~~~~~r~~~a~~wR 225 (1128)
T 3p8c_B 207 LISLQMVYPRRNLSADQWR 225 (1128)
T ss_dssp HHGGGGTHHHHSCCHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHH
T ss_conf 9985899987167499886
No 3
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=1.00 E-value=1 Score=12.76 Aligned_cols=63 Identities=14% Similarity=0.338 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCC---CCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 78999999999999973049999103676550343---2323426951489875499999850355
Q 005566 554 YTDFLRIVLEILNAILTYALPRNPEVVYAILHREE---VFQPFKSHPRFNELLENIYTVLDFFNSR 616 (691)
Q Consensus 554 ~~~~L~~lLEiiNsiL~~~l~~Np~LVYalL~~r~---~F~~l~~hp~f~~~~~Ni~~vi~~f~~~ 616 (691)
++.-+..++.++.-.+......-....-.+|+.|+ .++.+.+||.|++.-.++..++++.-.|
T Consensus 201 lekrielllla~Ef~I~sk~~~~~~~Ll~~m~ek~~~wS~~Ei~~~p~~~~~~idle~iL~~Lv~k 266 (290)
T 3c18_A 201 LEQRIHLALIGLEHLLQSKVLSGGKYLFEVMRERDRPWTMHELMEESRLTELKVDLGSLVDFFIRK 266 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTSSSCEEHHHHHHCGGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 999999999999999998799999999999982588878999854912100367799999999970
No 4
>2k0d_X IMME7, colicin-E7 immunity protein; toxin inhibitor; NMR {Escherichia coli}
Probab=1.00 E-value=1 Score=11.24 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCHHHHHH
Q ss_conf 899999999999997304999910367655034323234269514898754999998503-5532001579888999999
Q 005566 555 TDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFN-SRLDAQRVDGEWSVEKVLQ 633 (691)
Q Consensus 555 ~~~L~~lLEiiNsiL~~~l~~Np~LVYalL~~r~~F~~l~~hp~f~~~~~Ni~~vi~~f~-~~l~~~~~~~~~s~~~vl~ 633 (691)
.++|.+|=+|+++- +..... . +=.++ +.|..+-.||.-.|+| |+. ++-+....+.+.|++.|+.
T Consensus 20 ~EFi~lv~~I~~~~--~~~e~e-~-~d~Ll---~hF~~iteHP~GSDLI--------fYP~~~~~~~~~~~e~sPEgIvk 84 (101)
T 2k0d_X 20 AEFVQLLKEIEKEN--VAATDD-V-LDVLL---EHFVKITEHPDGTALI--------YEAAARAAANPGGDGGGPEGIVK 84 (101)
T ss_dssp HHHHHHHHHHHHHH--HHTCSH-H-HHHHH---HHHHHHHCCTTHHHHH--------HHHHHHHHHCSSSTTSSGGGHHH
T ss_pred HHHHHHHHHHHHCC--CCCCHH-H-HHHHH---HHHHHCCCCCCCCCEE--------EECCCCCCCCCCCCCCCHHHHHH
T ss_conf 99999999998367--886157-7-99999---9999737899877436--------63462123577887889899999
Q ss_pred HHHHHCCCCCCCCCC
Q ss_conf 999810106999888
Q 005566 634 SIIINCRSWRGDGLK 648 (691)
Q Consensus 634 ~I~~~~~~~~~~~l~ 648 (691)
.|++.-.+--..+.|
T Consensus 85 ~IKeWRa~nGkPgFK 99 (101)
T 2k0d_X 85 EIKEWRAANGKPGFK 99 (101)
T ss_dssp HHHHHHHHHTCCCCB
T ss_pred HHHHHHHHCCCCCCC
T ss_conf 999999973996667
No 5
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=1.00 E-value=1 Score=11.23 Aligned_cols=17 Identities=24% Similarity=0.514 Sum_probs=13.1
Q ss_pred CCCCCCHHHHHHCCCCC
Q ss_conf 99991036765503432
Q 005566 573 LPRNPEVVYAILHREEV 589 (691)
Q Consensus 573 l~~Np~LVYalL~~r~~ 589 (691)
+++||.|.-|+++.|..
T Consensus 26 LksnPqLMAAfIkQR~~ 42 (47)
T 1zoq_C 26 LKSNPQLMAAFIKQRTA 42 (47)
T ss_dssp HHTCHHHHHHHHHHTTT
T ss_pred HHCCHHHHHHHHHHHHH
T ss_conf 97098999999999998
No 6
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=11.20 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 499999850355320015798889999999998101
Q 005566 605 NIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCR 640 (691)
Q Consensus 605 Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~~I~~~~~ 640 (691)
||.||.+|.+.....-..-...|++.+.++++.-..
T Consensus 24 ~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~ 59 (83)
T 2kz3_A 24 RIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLA 59 (83)
T ss_dssp TCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 997799999689999999959999999999999999
No 7
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=1.00 E-value=1 Score=11.12 Aligned_cols=17 Identities=24% Similarity=0.514 Sum_probs=12.5
Q ss_pred CCCCCCHHHHHHCCCCC
Q ss_conf 99991036765503432
Q 005566 573 LPRNPEVVYAILHREEV 589 (691)
Q Consensus 573 l~~Np~LVYalL~~r~~ 589 (691)
++.||.|.-|++++|..
T Consensus 33 LksNPqLMAAfIKQR~~ 49 (59)
T 1kbh_B 33 LKSNPQLMAAFIKQRTA 49 (59)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHHHHH
T ss_conf 97198999999999999
No 8
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=1.00 E-value=1 Score=10.81 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8886237799976566789999879
Q 005566 647 LKVKADRFWMLLFKLGTFIQMILPL 671 (691)
Q Consensus 647 l~~fp~l~~~~~~~~~~~~~~~~~~ 671 (691)
|+||-.---.-+-|.|.-||-.+|-
T Consensus 6 lrkfrnkikeklkkigqkiqgllpk 30 (32)
T 1lyp_A 6 LRKFRNKIKEKLKKIGQKIQGLLPK 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999998999845303
No 9
>2fm9_A Cell invasion protein SIPA; type II secretion, virulence, bacterial, C invasion; 2.00A {Salmonella typhimurium} SCOP: a.257.1.1
Probab=1.00 E-value=1 Score=10.68 Aligned_cols=130 Identities=17% Similarity=0.129 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHCCCC-----CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHH-HHH
Q ss_conf 33888999999427822453310144-----689863223345545600388999999985202344311122338-999
Q 005566 420 QIYMLLIILLILSQDSSFNASIHKMI-----LPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTC-LAT 493 (691)
Q Consensus 420 ~i~m~l~ILLiLS~d~~F~~~l~~~~-----l~~i~w~~er~~~~~SlgdLlIlvl~r~I~~n~~~l~d~ylh~~c-La~ 493 (691)
.-|-..||==-|+|+..||-=.-++- +.++-..---+..+-+-||+. ++...+..+.. --|
T Consensus 73 ~qYta~i~kDgL~ekSAFGPWt~~tkK~~~~~~~le~kL~~i~~~~t~Gd~~-------------~l~~~f~~~EV~~~I 139 (215)
T 2fm9_A 73 AEYTAQIIKDGLKEKSAFGPWLPETKKAEAKLENLEKQLLDIIKNNTGGELS-------------KLSTNLVMQEVMPYI 139 (215)
T ss_dssp HHHHHHHHHHCCCSSCSSSTTSCCSHHHHHHHHHHHHHHHHHHHHCCHHHHH-------------HHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH-------------HHHHHHHHHHHHHHH
T ss_conf 9999999874223334679998542579999998999999999862443088-------------998999999989999
Q ss_pred HHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 850230001-4799879999999999898699764101334----78887778413456665555789999999999
Q 005566 494 LANMAPHVH-RLSAYASQRLVSLFYMLSRKYNKIADRRDDK----KGNLTEQDSFAEDMSAELHIYTDFLRIVLEIL 565 (691)
Q Consensus 494 LaNisp~~~-~Ls~~asqRLv~Lf~~ls~~~~~l~~~~~~~----~~~~~~~~~~~~d~~~el~~~~~~L~~lLEii 565 (691)
..|+-.++. .|++.++.++-+|.+.-+++-+.....-..+ +|-..+ ..+-|. +-..+.+.+||.|++.|
T Consensus 140 ~~cIe~~~g~~Ld~~T~s~it~LVD~aA~~A~~aL~~~~~~l~~~qG~sVG--~~aR~L-~~~av~P~LLR~v~~~i 213 (215)
T 2fm9_A 140 ASCIEHNFGCTLDPLTRSNLTHLVDKAAAKAVEALDMCHQKLTQEQGTSVG--REARHL-EMQTLIPLLLRNVFAQI 213 (215)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CC-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH--HHHHHH-HHHHHHHHHHHHHHHHC
T ss_conf 999999856557888897799999999999999999998868886074253--786312-59999999999998647
No 10
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=10.55 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=0.0
Q ss_pred HHHHCCCC-CCCCC-HHHHHHHC
Q ss_conf 97628965-79995-36898403
Q 005566 24 ATFVGEKS-FPLAS-DFWQKLLE 44 (691)
Q Consensus 24 ~rLs~~~~-I~~~D-~FW~qlws 44 (691)
+.|.|-++ ||++| ++.+.|++
T Consensus 67 ~LL~gmRpFIp~~Di~~FesFle 89 (98)
T 4fqn_A 67 FLLLGLRPFIPEKDSQHFENFLE 89 (98)
T ss_dssp GGGGGGGGGSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 88750567787553799999999
Done!