Query 005566
Match_columns 691
No_of_seqs 184 out of 237
Neff 6.0
Searched_HMMs 13730
Date Tue Mar 26 18:21:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005566.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2074-2078//hhsearch_scop/005566hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x3zb1 a.189.1.1 (B:253-309) 26.7 12 0.00089 12.9 1.5 35 511-565 23-57 (57)
2 d2oeza1 e.68.1.1 (A:1-245) Unc 9.9 31 0.0023 10.4 3.5 13 278-291 162-174 (245)
3 d1ho8a_ a.118.1.9 (A:) Regulat 9.7 32 0.0023 10.3 5.1 65 379-445 188-266 (477)
4 d1bu2a2 a.74.1.1 (A:149-250) V 6.0 56 0.0041 8.8 0.5 33 24-67 9-41 (102)
5 d1rsoa_ a.194.1.1 (A:) Presyna 5.7 60 0.0044 8.6 2.2 23 597-619 22-44 (60)
6 d1gxha_ a.28.2.1 (A:) ImmE8 (I 5.5 63 0.0046 8.5 5.7 71 555-648 13-83 (85)
7 d1ayia_ a.28.2.1 (A:) ImmE7 pr 5.3 65 0.0048 8.4 4.6 71 555-646 13-83 (86)
8 d2pf1a2 g.32.1.1 (A:36-65) Pro 5.0 70 0.0051 8.2 0.9 24 33-57 1-24 (30)
9 d1i1rb_ a.26.1.1 (B:) Interleu 4.5 79 0.0058 7.9 2.2 90 598-688 72-163 (167)
10 d2oo3a1 c.66.1.59 (A:9-279) Un 4.2 89 0.0065 7.6 0.8 49 557-605 70-122 (271)
No 1
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.69 E-value=12 Score=12.88 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999989869976410133478887778413456665555789999999999
Q 005566 511 RLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEIL 565 (691)
Q Consensus 511 RLv~Lf~~ls~~~~~l~~~~~~~~~~~~~~~~~~~d~~~el~~~~~~L~~lLEii 565 (691)
-|.-||+.+|.||-.+++++.. | -+.++.++||++
T Consensus 23 al~plle~ls~ryp~lre~im~----------------n----pe~fismlleav 57 (57)
T d1x3zb1 23 ALAPLLENISARYPQLREHIMA----------------N----PEVFVSMLLEAV 57 (57)
T ss_dssp GHHHHHHHHHTTCHHHHHHHHT----------------C----HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------C----HHHHHHHHHHHC
T ss_conf 7778999998766799999975----------------9----799999998629
No 2
>d2oeza1 e.68.1.1 (A:1-245) Uncharacterized protein VP2528 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=9.90 E-value=31 Score=10.36 Aligned_cols=13 Identities=46% Similarity=0.723 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 27999999999996
Q 005566 278 PLTDCSLLVLLVLI 291 (691)
Q Consensus 278 pL~~~slqlLLVLl 291 (691)
|+.+ ++.++|-|+
T Consensus 162 pl~~-ai~~iL~ll 174 (245)
T d2oeza1 162 PLSD-ALTLWLKLA 174 (245)
T ss_dssp HHHH-HHHHHHHHH
T ss_pred HHHH-HHHHHHHHH
T ss_conf 9999-999999999
No 3
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.69 E-value=32 Score=10.31 Aligned_cols=65 Identities=11% Similarity=0.253 Sum_probs=33.4
Q ss_pred HHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCC---------C-----CCHHHHHHHHHHHCCCCHHHHHHCCC
Q ss_conf 999841491003556101353454999999997135699---------9-----83388899999942782245331014
Q 005566 379 LYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKT---------P-----NQIYMLLIILLILSQDSSFNASIHKM 444 (691)
Q Consensus 379 Ly~Ll~~N~~F~~~vl~~~d~~~lv~piL~~ly~~~~~~---------s-----~~i~m~l~ILLiLS~d~~F~~~l~~~ 444 (691)
.+..+=..+.||..+-... ...+.|++.++-.+-... + +..|=+++++-.||=+..++..+.+.
T Consensus 188 ~lq~llr~~~~R~~fw~~~--~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~ 265 (477)
T d1ho8a_ 188 LLQELAVIPEYRDVIWLHE--KKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQK 265 (477)
T ss_dssp HHHHHHTSHHHHHHHHTTH--HHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTT
T ss_pred HHHHHHCCCCHHHHHHHCC--CCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9998826750789998813--22178899999987425654200003688853799999999999997589789998773
Q ss_pred C
Q ss_conf 4
Q 005566 445 I 445 (691)
Q Consensus 445 ~ 445 (691)
+
T Consensus 266 ~ 266 (477)
T d1ho8a_ 266 Y 266 (477)
T ss_dssp S
T ss_pred H
T ss_conf 2
No 4
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=5.95 E-value=56 Score=8.80 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=20.5
Q ss_pred HHHHCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 97628965799953689840377888898411399999998735
Q 005566 24 ATFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNN 67 (691)
Q Consensus 24 ~rLs~~~~I~~~D~FW~qlws~p~s~~~p~d~l~~~~~~L~~nN 67 (691)
.-++..-.||+ +||-|+++. +...+|+++++-|
T Consensus 9 ip~c~alkipe--~~wpql~e~---------~s~tickaliqpn 41 (102)
T d1bu2a2 9 IPLCNALKIPE--DLWPQLYEA---------ASTTICKALIQPN 41 (102)
T ss_dssp HHHHHHTTCCT--TSHHHHHHH---------HHHHHHHHTTSTT
T ss_pred HHHHHHCCCCH--HHHHHHHHH---------HHHHHHHHHCCCC
T ss_conf 77643406967--784999999---------8999999981887
No 5
>d1rsoa_ a.194.1.1 (A:) Presynaptic protein sap97 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.69 E-value=60 Score=8.64 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 51489875499999850355320
Q 005566 597 PRFNELLENIYTVLDFFNSRLDA 619 (691)
Q Consensus 597 p~f~~~~~Ni~~vi~~f~~~l~~ 619 (691)
|..+++-..|+.||+-|.+++-+
T Consensus 22 ~~D~~lr~~iervI~iFkS~LF~ 44 (60)
T d1rsoa_ 22 TEDRQLRSSIERVISIFQSNLFQ 44 (60)
T ss_dssp SSCHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 44188999999999999999999
No 6
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=5.46 E-value=63 Score=8.51 Aligned_cols=71 Identities=24% Similarity=0.301 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 89999999999999730499991036765503432323426951489875499999850355320015798889999999
Q 005566 555 TDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQS 634 (691)
Q Consensus 555 ~~~L~~lLEiiNsiL~~~l~~Np~LVYalL~~r~~F~~l~~hp~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~~ 634 (691)
.++|.+|-+|+|+- +...-.-.++ +.|..+-.||.-.|+|= | ...+.+.|++.|+..
T Consensus 13 ~EFl~fl~~i~n~~------~~e~~~d~ll---~hF~~iteHP~gsDLIf--------Y------P~~~~edsPegIv~~ 69 (85)
T d1gxha_ 13 TEFKKIIEDIINCE------GDEKKQDDNL---EHFISVTEHPSGSDLIY--------Y------PEGNNDGSPEAVIKE 69 (85)
T ss_dssp HHHHHHHHHHHHTC------SSSHHHHHHH---HHHHHTTCCTTTTHHHH--------S------CCSSCSSCTHHHHHH
T ss_pred HHHHHHHHHHHHCC------CCHHHHHHHH---HHHHHHCCCCCCCCEEE--------E------CCCCCCCCHHHHHHH
T ss_conf 99999999998268------9658889999---99998047999886256--------4------899888898999999
Q ss_pred HHHHCCCCCCCCCC
Q ss_conf 99810106999888
Q 005566 635 IIINCRSWRGDGLK 648 (691)
Q Consensus 635 I~~~~~~~~~~~l~ 648 (691)
|++.-.+--..+-|
T Consensus 70 IKeWRa~nG~PgFK 83 (85)
T d1gxha_ 70 IKEWRAANGKSGFK 83 (85)
T ss_dssp HHHHHHHTTCCCSC
T ss_pred HHHHHHHCCCCCCC
T ss_conf 99999975996556
No 7
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=5.30 E-value=65 Score=8.41 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 89999999999999730499991036765503432323426951489875499999850355320015798889999999
Q 005566 555 TDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQS 634 (691)
Q Consensus 555 ~~~L~~lLEiiNsiL~~~l~~Np~LVYalL~~r~~F~~l~~hp~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~~ 634 (691)
.++|.+|-+++++-....- .-.=.++ +.|..+-.||.-.|+|= | ...+.+-|++.|+..
T Consensus 13 ~EFl~fl~~i~~~~~~~~e----~~~d~l~---~hF~~iteHP~gsDLIy--------Y------P~~~~edsPegI~k~ 71 (86)
T d1ayia_ 13 AEFVQLLKEIEKENVAATD----DVLDVLL---EHFVKITEHPDGTDLIY--------Y------PSDNRDDSPEGIVKE 71 (86)
T ss_dssp HHHHHHHHHHHHHHTSSSS----HHHHHHH---HHHHHHHCCTTTTHHHH--------S------CCTTSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCH----HHHHHHH---HHHHHHHCCCCCCCEEE--------E------CCCCCCCCHHHHHHH
T ss_conf 9999999999965688508----8999999---99999970899886255--------0------899887888999999
Q ss_pred HHHHCCCCCCCC
Q ss_conf 998101069998
Q 005566 635 IIINCRSWRGDG 646 (691)
Q Consensus 635 I~~~~~~~~~~~ 646 (691)
|++.-.+--..+
T Consensus 72 IKeWRa~nG~Pg 83 (86)
T d1ayia_ 72 IKEWRAANGKPG 83 (86)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHCCCCC
T ss_conf 999999759975
No 8
>d2pf1a2 g.32.1.1 (A:36-65) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.04 E-value=70 Score=8.23 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 9995368984037788889841139
Q 005566 33 PLASDFWQKLLELPLSLHWPSHRVH 57 (691)
Q Consensus 33 ~~~D~FW~qlws~p~s~~~p~d~l~ 57 (691)
++.|.||.++-.- +|...|.|.+.
T Consensus 1 satd~fwakytac-es~r~prekl~ 24 (30)
T d2pf1a2 1 SATDAFWAKYTAC-ESARNPREKLN 24 (30)
T ss_dssp CCSHHHHHHHHHT-STTCSSHHHHH
T ss_pred CCHHHHHHHHHHH-HHHCCCHHHHH
T ss_conf 9324899998899-87328099999
No 9
>d1i1rb_ a.26.1.1 (B:) Interleukin-6 {Human herpesvirus 8, Kaposi's sarcoma herpes-virus [TaxId: 37296]}
Probab=4.54 E-value=79 Score=7.89 Aligned_cols=90 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 148987549999985035532001579888999999999810106-9998888623779997656-67899998799872
Q 005566 598 RFNELLENIYTVLDFFNSRLDAQRVDGEWSVEKVLQSIIINCRSW-RGDGLKVKADRFWMLLFKL-GTFIQMILPLFILR 675 (691)
Q Consensus 598 ~f~~~~~Ni~~vi~~f~~~l~~~~~~~~~s~~~vl~~I~~~~~~~-~~~~l~~fp~l~~~~~~~~-~~~~~~~~~~~~~~ 675 (691)
++.+....+.-+-+.|....+. ..+-..|.......|++.++.+ -.....--|+..-+.-++. .+|...+.--+|||
T Consensus 72 GL~~yq~lL~~Lq~~f~~~~~~-v~~lq~stk~L~~~i~qk~k~~~~~~~~~Pt~~~sLl~~l~s~~~w~r~~t~hlILr 150 (167)
T d1i1rb_ 72 GFFEFEVLFKFLTTEFGKSVIN-VDVMELLTKTLGWDIQEELNKLTKTHYSPPKFDRGLLGRLQGLKYWVRHFASFYVLS 150 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTT-GGGHHHHHHHHHHHHHHHHHHHCSSCCCCCCCCHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9999999999999767687431-789999999999999999608565648898642010053126629999999999999
Q ss_pred CCCCCCCCHHHHE
Q ss_conf 4994310011103
Q 005566 676 NLDPFMTDVYSII 688 (691)
Q Consensus 676 ~~~~~~~~~~~~~ 688 (691)
+|.-|+-|.+-.+
T Consensus 151 ~Le~Fl~~a~Ral 163 (167)
T d1i1rb_ 151 AMEKFAGQAVRVL 163 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 10
>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}
Probab=4.15 E-value=89 Score=7.59 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHC----CCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9999999999997304----999910367655034323234269514898754
Q 005566 557 FLRIVLEILNAILTYA----LPRNPEVVYAILHREEVFQPFKSHPRFNELLEN 605 (691)
Q Consensus 557 ~L~~lLEiiNsiL~~~----l~~Np~LVYalL~~r~~F~~l~~hp~f~~~~~N 605 (691)
.+...++++.++-... |++-|-+.-.++|.+++..-+.-||...+.+.+
T Consensus 70 ~~~~yl~~v~~~n~~~~l~~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~ 122 (271)
T d2oo3a1 70 LFLEYISVIKQINLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLK 122 (271)
T ss_dssp GGHHHHHHHHHHSSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCHHHHHHHHH
T ss_conf 67899999997478998172899899999857877746885348788999998
Done!