Query 005567
Match_columns 691
No_of_seqs 331 out of 1987
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 18:34:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005567.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2074-2078//hhsearch_pdb/005567hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 1.0 1 1 160.8 15.7 129 417-585 35-163 (169)
2 3lvq_E ARF-GAP with SH3 domain 1.0 1 1 156.4 14.5 143 421-598 134-279 (497)
3 1dcq_A PYK2-associated protein 1.0 1 1 151.4 16.5 143 421-598 132-277 (278)
4 1oy3_D Transcription factor in 1.0 1 1 150.7 15.1 154 417-601 76-271 (282)
5 4b93_B Ankyrin repeat domain-c 1.0 1 1 150.0 14.1 141 417-597 84-227 (269)
6 4gpm_A Engineered protein OR26 1.0 1 1 148.3 15.2 126 420-585 5-130 (169)
7 4b93_B Ankyrin repeat domain-c 1.0 1 1 147.5 7.5 118 419-578 119-236 (269)
8 3ljn_A Hypothetical protein; a 1.0 1 1 147.1 14.1 132 417-583 136-269 (364)
9 4hbd_A KN motif and ankyrin re 1.0 1 1 146.2 14.6 135 418-583 110-275 (276)
10 1n11_A Ankyrin; clathrin, BAND 1.0 1 1 144.9 16.1 122 420-581 279-400 (437)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=160.78 Aligned_cols=129 Identities=26% Similarity=0.280 Sum_probs=115.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 12132899987555089999987631147656799975000049970989999809999999997259997433335543
Q 005567 417 RRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSEN 496 (691)
Q Consensus 417 kR~~~lL~fAv~~g~~avvk~LL~~l~~g~v~~~~~~~~~~~l~G~TpLH~Av~~g~~~iVelLL~~g~~~~~d~~a~~~ 496 (691)
....++|++|+..+...+++.|++..++ .+ ..+..|.||||+|+..|+.++|++||++|+
T Consensus 35 ~~g~t~l~~a~~~~~~~~~~~ll~~gad----~~-----~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga----------- 94 (169)
T 4gpm_A 35 SDGRTPLHHAAENGHKEVVKLLISKGAD----VN-----AKDSDGRTPLHHAAENGHKEVVKLLISKGA----------- 94 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCC----TT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----------
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCC----HH-----HHCCCCCCHHHHHHHCCCHHHHHHHHHCCC-----------
T ss_conf 9989899999984999999999831531----13-----303579999999999397999999998769-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Q ss_conf 20003655785579964799998489899730999889999605999887653332679999999999998399999999
Q 005567 497 KALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 576 (691)
Q Consensus 497 ~~~~~~~~~~~~f~vn~~d~~G~TPLHlAA~~~G~~evV~~LL~~p~~~g~gA~~narD~~G~TPLh~A~~~Gh~~iv~l 576 (691)
++|.+|..|+||||+|+. .|+.+++++|++. |++++.+|..|+||||+|+.+|+.+++++
T Consensus 95 -------------dvn~~d~~G~TpLh~A~~-~g~~~~v~~Ll~~------gad~~~~d~~G~TpL~~A~~~g~~~iv~~ 154 (169)
T 4gpm_A 95 -------------DVNAKDSDGRTPLHHAAE-NGHKEVVKLLISK------GADVNTSDSDGRTPLDLAREHGNEEVVKL 154 (169)
T ss_dssp -------------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred -------------CCCCCCCCCCCHHHHHHH-CCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHH
T ss_conf -------------999879999989999998-5989999999986------99741569999999999998689999999
Q ss_pred HHHHHHCCC
Q ss_conf 998641299
Q 005567 577 VQKKINKRP 585 (691)
Q Consensus 577 L~~k~~~~~ 585 (691)
|++++++.-
T Consensus 155 Ll~~GA~ie 163 (169)
T 4gpm_A 155 LEKQGGWLE 163 (169)
T ss_dssp HHTC-----
T ss_pred HHHCCCCCC
T ss_conf 998799907
No 2
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=1.00 E-value=1 Score=156.37 Aligned_cols=143 Identities=24% Similarity=0.178 Sum_probs=120.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHH---CCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 28999875550899999876311476567999750000499709899998---099999999972599974333355432
Q 005567 421 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVR---KNSRPLVDLLLRFVPLEVSDRLGSENK 497 (691)
Q Consensus 421 ~lL~fAv~~g~~avvk~LL~~l~~g~v~~~~~~~~~~~l~G~TpLH~Av~---~g~~~iVelLL~~g~~~~~d~~a~~~~ 497 (691)
..|+.|+..+....++.||+..++-+... .....+..|.||||+|++ .|+.++|++||++|+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~---~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga------------ 198 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPL---PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG------------ 198 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCB---CCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSC------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCCCC---CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCC------------
T ss_conf 99999886358999999986066535777---775434555058899998601564799999997499------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 00036557855799647999984898997309998899996059998876533326799999999999983999999999
Q 005567 498 ALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 577 (691)
Q Consensus 498 ~~~~~~~~~~~f~vn~~d~~G~TPLHlAA~~~G~~evV~~LL~~p~~~g~gA~~narD~~G~TPLh~A~~~Gh~~iv~lL 577 (691)
++|.+|..|+||||+||. .|+.+++++|+++ ||+++++|..|.||||+|+..||.+++++|
T Consensus 199 ------------~vn~~d~~g~TpLh~A~~-~g~~~~v~~Ll~~------ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 259 (497)
T 3lvq_E 199 ------------HLDAKAADGNTALHYAAL-YNQPDCLKLLLKG------RALVGTVNEAGETALDIARKKHHKECEELL 259 (497)
T ss_dssp ------------CTTCCCSSSCCHHHHHTT-TTCHHHHHHHHHT------CCCCSCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred ------------CCCCCCCCCCCHHHHHHH-CCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
T ss_conf ------------977608999959999998-0989899999976------999878198989799999981979999999
Q ss_pred HHHHHCCCCCCCCEEEECCCC
Q ss_conf 986412999997113408988
Q 005567 578 QKKINKRPNGGHVVVDICGVV 598 (691)
Q Consensus 578 ~~k~~~~~~~~~v~v~i~~~~ 598 (691)
++.+++.. ..+.++..++..
T Consensus 260 l~~ga~~~-~~~~h~~~~~~~ 279 (497)
T 3lvq_E 260 EQAQAGTF-AFPLHVDYSWVI 279 (497)
T ss_dssp HHTCC----------------
T ss_pred HHHCCCCC-CCCCEEECCCCC
T ss_conf 98189988-986113112467
No 3
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=1.00 E-value=1 Score=151.37 Aligned_cols=143 Identities=22% Similarity=0.139 Sum_probs=121.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHC---CCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 289998755508999998763114765679997500004997098999980---99999999972599974333355432
Q 005567 421 WLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRK---NSRPLVDLLLRFVPLEVSDRLGSENK 497 (691)
Q Consensus 421 ~lL~fAv~~g~~avvk~LL~~l~~g~v~~~~~~~~~~~l~G~TpLH~Av~~---g~~~iVelLL~~g~~~~~d~~a~~~~ 497 (691)
..|+.|+..+....++.++....+.... . .....+..|.||||+|+.. ++.+++++|+++|+
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~--~-~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga------------ 196 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEK--I-PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG------------ 196 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSB--C-CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCHHHH--C-CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCC------------
T ss_conf 5666676520008899999830101332--0-123456678874058887526652899999997799------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
Q ss_conf 00036557855799647999984898997309998899996059998876533326799999999999983999999999
Q 005567 498 ALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLV 577 (691)
Q Consensus 498 ~~~~~~~~~~~f~vn~~d~~G~TPLHlAA~~~G~~evV~~LL~~p~~~g~gA~~narD~~G~TPLh~A~~~Gh~~iv~lL 577 (691)
++|.+|..|+||||+|+. .|+.+++++|++. ||+++.+|..|.||||+|+..||.+++++|
T Consensus 197 ------------~in~~d~~g~TpLh~A~~-~g~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~~~~~~v~~L 257 (278)
T 1dcq_A 197 ------------NLDKQTGKGSTALHYCCL-TDNAECLKLLLRG------KASIEIANESGETPLDIAKRLKHEHCEELL 257 (278)
T ss_dssp ------------CTTCCCTTCCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ------------CCCCCCCCCCCHHHHHHH-CCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHH
T ss_conf ------------751428998978999998-2989999999976------989877568999899999883988999999
Q ss_pred HHHHHCCCCCCCCEEEECCCC
Q ss_conf 986412999997113408988
Q 005567 578 QKKINKRPNGGHVVVDICGVV 598 (691)
Q Consensus 578 ~~k~~~~~~~~~v~v~i~~~~ 598 (691)
.+.++.+. +.|..+++.|.+
T Consensus 258 l~~ga~~~-~~~~~v~~~W~l 277 (278)
T 1dcq_A 258 TQALSGRF-NSHVHVEYEWRL 277 (278)
T ss_dssp HHHHTTCC-CSSCCCCCCCCC
T ss_pred HHCCCCCC-CCCEEEECCCCC
T ss_conf 98079987-765356212156
No 4
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=1.00 E-value=1 Score=150.70 Aligned_cols=154 Identities=21% Similarity=0.140 Sum_probs=121.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCC--------------------------------------CCCHHHC
Q ss_conf 12132899987555089999987631147656799--------------------------------------9750000
Q 005567 417 RRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGE--------------------------------------HPSLDLA 458 (691)
Q Consensus 417 kR~~~lL~fAv~~g~~avvk~LL~~l~~g~v~~~~--------------------------------------~~~~~~~ 458 (691)
....++|++|+..+...+++.|++........... ......+
T Consensus 76 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (282)
T 1oy3_D 76 RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155 (282)
T ss_dssp TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCC
T ss_pred CCCCCHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 89999999998738840557642347777224677775234345850110022201356530000023355540577767
Q ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHCCCCHHHHHH
Q ss_conf 49970989999809999999997259997433335543200036557855799647999-98489899730999889999
Q 005567 459 LTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPA-GLTPIHIAAGKDGSEDVLDA 537 (691)
Q Consensus 459 l~G~TpLH~Av~~g~~~iVelLL~~g~~~~~d~~a~~~~~~~~~~~~~~~f~vn~~d~~-G~TPLHlAA~~~G~~evV~~ 537 (691)
..|.||||+|++.|+.+++++|+++|+ +++..+.. |+||||+|+. .|+.+++++
T Consensus 156 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~------------------------~~~~~~~~~g~tpL~~A~~-~~~~~~v~~ 210 (282)
T 1oy3_D 156 YDGHTPLHVAVIHKDAEMVRLLRDAGA------------------------DLNKPEPTCGRTPLHLAVE-AQAASVLEL 210 (282)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHTC------------------------CTTCCCTTTCCCHHHHHHH-TTCHHHHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCC------------------------CCCCCCCCCCCCHHHHHHH-CCCHHHHHH
T ss_conf 899689999997499999999998389------------------------8788887789689999988-398999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCC---CCCCEEEECCCCCCC
Q ss_conf 6059998876533326799999999999983999999999986412999---997113408988983
Q 005567 538 LTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINKRPN---GGHVVVDICGVVPDS 601 (691)
Q Consensus 538 LL~~p~~~g~gA~~narD~~G~TPLh~A~~~Gh~~iv~lL~~k~~~~~~---~~~v~v~i~~~~~~~ 601 (691)
|++. |++++.+|..|.||||+|+.+|+.+++++|++++++... .+..++.+.....+.
T Consensus 211 Ll~~------gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 211 LLKA------GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp HHHT------TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----------------
T ss_pred HHHC------CCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9975------999866446999789999984991799999984998576787455654335786555
No 5
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=149.98 Aligned_cols=141 Identities=19% Similarity=0.174 Sum_probs=120.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 12132899987555089999987631147656799975000049970989999809999999997259997433335543
Q 005567 417 RRFKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSEN 496 (691)
Q Consensus 417 kR~~~lL~fAv~~g~~avvk~LL~~l~~g~v~~~~~~~~~~~l~G~TpLH~Av~~g~~~iVelLL~~g~~~~~d~~a~~~ 496 (691)
....++|++|+..|+..+++.||+..++. . ..+..|.||||.|+..++.+++++|+++|+
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~----~-----~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~----------- 143 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLKHGANA----G-----ARNADQAVPLHLACQQGHFQVVKCLLDSNA----------- 143 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHHTTCCT----T-----CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-----------
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCC----C-----CCCCCCCCCCCCCCCCCHHHHHHHHHHCCC-----------
T ss_conf 99999999999849699999998659986----7-----557899983300001272999999998799-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Q ss_conf 20003655785579964799998489899730999889999605999887653332679999999999998399999999
Q 005567 497 KALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHL 576 (691)
Q Consensus 497 ~~~~~~~~~~~~f~vn~~d~~G~TPLHlAA~~~G~~evV~~LL~~p~~~g~gA~~narD~~G~TPLh~A~~~Gh~~iv~l 576 (691)
++|.+|..|+||||+|+. .|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++
T Consensus 144 -------------~~n~~d~~g~TpL~~A~~-~g~~~~v~~Ll~~------gadvn~~~~~g~t~Lh~A~~~g~~~~v~~ 203 (269)
T 4b93_B 144 -------------KPNKKDLSGNTPLIYACS-GGHHELVALLLQH------GASINASNNKGNTALHEAVIEKHVFVVEL 203 (269)
T ss_dssp -------------CSCCCCTTCCCHHHHHHH-TTCGGGHHHHHHT------TCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred -------------CCCCCCCCCCCHHHHHHH-CCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHH
T ss_conf -------------988778999999999998-7899999999978------79978321478838999998688999999
Q ss_pred HHHHHHCCC---CCCCCEEEECCC
Q ss_conf 998641299---999711340898
Q 005567 577 VQKKINKRP---NGGHVVVDICGV 597 (691)
Q Consensus 577 L~~k~~~~~---~~~~v~v~i~~~ 597 (691)
|++++++.. ..+..++.++.+
T Consensus 204 Ll~~Gad~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 204 LLLHGASVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp HHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 998788998869999999999883
No 6
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=1.00 E-value=1 Score=148.33 Aligned_cols=126 Identities=25% Similarity=0.247 Sum_probs=112.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 32899987555089999987631147656799975000049970989999809999999997259997433335543200
Q 005567 420 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 499 (691)
Q Consensus 420 ~~lL~fAv~~g~~avvk~LL~~l~~g~v~~~~~~~~~~~l~G~TpLH~Av~~g~~~iVelLL~~g~~~~~d~~a~~~~~~ 499 (691)
...|+.|+..|..++|+.||+..++ .+ ..+..|.||||+|+..++.+++++|++.|+
T Consensus 5 g~~L~~Aa~~G~~~~v~~Ll~~Gad----vn-----~~d~~g~t~l~~a~~~~~~~~~~~ll~~ga-------------- 61 (169)
T 4gpm_A 5 GKRLIEAAENGNKDRVKDLIENGAD----VN-----ASDSDGRTPLHHAAENGHKEVVKLLISKGA-------------- 61 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCC----TT-----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC--------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHCCCC----CC-----CCCCCCCCHHHHHHHCCCHHHHHHHHHCCC--------------
T ss_conf 8999999995899999999987899----88-----849998989999998499999999983153--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 03655785579964799998489899730999889999605999887653332679999999999998399999999998
Q 005567 500 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 579 (691)
Q Consensus 500 ~~~~~~~~~f~vn~~d~~G~TPLHlAA~~~G~~evV~~LL~~p~~~g~gA~~narD~~G~TPLh~A~~~Gh~~iv~lL~~ 579 (691)
+++.++..|+||||+|+. .|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|++
T Consensus 62 ----------d~~~~d~~g~TpLh~A~~-~g~~~~v~~Ll~~------gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~ 124 (169)
T 4gpm_A 62 ----------DVNAKDSDGRTPLHHAAE-NGHKEVVKLLISK------GADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 124 (169)
T ss_dssp ----------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ----------CHHHHCCCCCCHHHHHHH-CCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf ----------113303579999999999-3979999999987------69999879999989999998598999999998
Q ss_pred HHHCCC
Q ss_conf 641299
Q 005567 580 KINKRP 585 (691)
Q Consensus 580 k~~~~~ 585 (691)
++++..
T Consensus 125 ~gad~~ 130 (169)
T 4gpm_A 125 KGADVN 130 (169)
T ss_dssp TTCCTT
T ss_pred CCCCCC
T ss_conf 699741
No 7
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=147.50 Aligned_cols=118 Identities=21% Similarity=0.124 Sum_probs=103.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 13289998755508999998763114765679997500004997098999980999999999725999743333554320
Q 005567 419 FKWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKA 498 (691)
Q Consensus 419 ~~~lL~fAv~~g~~avvk~LL~~l~~g~v~~~~~~~~~~~l~G~TpLH~Av~~g~~~iVelLL~~g~~~~~d~~a~~~~~ 498 (691)
..+++++++..+...+++.|++..++ .+ ..+..|.||||+|+..|+.++|++||++|+
T Consensus 119 g~t~l~~a~~~~~~~~~~~Ll~~g~~----~n-----~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga------------- 176 (269)
T 4b93_B 119 QAVPLHLACQQGHFQVVKCLLDSNAK----PN-----KKDLSGNTPLIYACSGGHHELVALLLQHGA------------- 176 (269)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCC----SC-----CCCTTCCCHHHHHHHTTCGGGHHHHHHTTC-------------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCC----CC-----CCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-------------
T ss_conf 99833000012729999999987999----88-----778999999999998789999999997879-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Q ss_conf 00365578557996479999848989973099988999960599988765333267999999999999839999999999
Q 005567 499 LVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQ 578 (691)
Q Consensus 499 ~~~~~~~~~~f~vn~~d~~G~TPLHlAA~~~G~~evV~~LL~~p~~~g~gA~~narD~~G~TPLh~A~~~Gh~~iv~lL~ 578 (691)
++|.++..|+||||+|+. .|+.++|++|++. ||+++.+|..|+||||+|+..++ ++++|.
T Consensus 177 -----------dvn~~~~~g~t~Lh~A~~-~g~~~~v~~Ll~~------Gad~~~~d~~G~TpL~~A~~~~~--i~~lL~ 236 (269)
T 4b93_B 177 -----------SINASNNKGNTALHEAVI-EKHVFVVELLLLH------GASVQVLNKRQRTAVDCAEQNSK--IMELLQ 236 (269)
T ss_dssp -----------CTTCBCTTSCBHHHHHHH-TTCHHHHHHHHHT------TCCSCCCCTTSCCSGGGSCTTCH--HHHHTT
T ss_pred -----------CCCCCCCCCCCHHHHHHH-CCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCC--HHHHHH
T ss_conf -----------978321478838999998-6889999999987------88998869999999999883784--999999
No 8
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=1.00 E-value=1 Score=147.15 Aligned_cols=132 Identities=17% Similarity=0.126 Sum_probs=107.3
Q ss_pred CCCCHHHHHHHHCC--CHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 12132899987555--0899999876311476567999750000499709899998099999999972599974333355
Q 005567 417 RRFKWLIEFSMDHE--WCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGS 494 (691)
Q Consensus 417 kR~~~lL~fAv~~g--~~avvk~LL~~l~~g~v~~~~~~~~~~~l~G~TpLH~Av~~g~~~iVelLL~~g~~~~~d~~a~ 494 (691)
....++|++|+..+ +..+++.|++..++- + ..+..|.||||+|+..|+.++|++|+++|++.
T Consensus 136 ~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~--~-------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------- 199 (364)
T 3ljn_A 136 CKGQTALHWCVGLGPEYLEMIKILVQLGASP--T-------AKDKADETPLMRAMEFRNREALDLMMDTVPSK------- 199 (364)
T ss_dssp ESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT--T-------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS-------
T ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHHCCCCC--C-------CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-------
T ss_conf 8898789999974996699999999769997--3-------62889998999999829899999998605541-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Q ss_conf 43200036557855799647999984898997309998899996059998876533326799999999999983999999
Q 005567 495 ENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYI 574 (691)
Q Consensus 495 ~~~~~~~~~~~~~~f~vn~~d~~G~TPLHlAA~~~G~~evV~~LL~~p~~~g~gA~~narD~~G~TPLh~A~~~Gh~~iv 574 (691)
...++|..+..|+||||+|+. .|+.+++++|++. |++++.+|..|.||||+|+..||.+++
T Consensus 200 ------------~~~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~------gad~~~~d~~g~tpL~~A~~~g~~~~v 260 (364)
T 3ljn_A 200 ------------SSLRLDYANKQGNSHLHWAIL-INWEDVAMRFVEM------GIDVNMEDNEHTVPLYLSVRAAMVLLT 260 (364)
T ss_dssp ------------SSCCTTCCCTTCCCTTHHHHT-TTCHHHHHHHHTT------TCCTTCCCTTSCCHHHHHHHTCCHHHH
T ss_pred ------------CCCCCCCCCCCCCCHHHHHHH-CCCHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHHCHHHHH
T ss_conf ------------235552328899809999997-5988999999986------999888799999889999983829999
Q ss_pred HHHHHHHHC
Q ss_conf 999986412
Q 005567 575 HLVQKKINK 583 (691)
Q Consensus 575 ~lL~~k~~~ 583 (691)
++|++++++
T Consensus 261 ~~Ll~~~~~ 269 (364)
T 3ljn_A 261 KELLQKTDV 269 (364)
T ss_dssp HHHHHHSCH
T ss_pred HHHHHCCCC
T ss_conf 999974880
No 9
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=1.00 E-value=1 Score=146.24 Aligned_cols=135 Identities=19% Similarity=0.140 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHC-CCCC-CCCCCC----------------------------CHHHCCCCCCHHHH
Q ss_conf 21328999875550899999876311-4765-679997----------------------------50000499709899
Q 005567 418 RFKWLIEFSMDHEWCAVVKKLLHILL-DGTV-SLGEHP----------------------------SLDLALTELGLLHR 467 (691)
Q Consensus 418 R~~~lL~fAv~~g~~avvk~LL~~l~-~g~v-~~~~~~----------------------------~~~~~l~G~TpLH~ 467 (691)
...++|++|+..+...+++.|++... +... +..... ....+..|.||||+
T Consensus 110 ~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~ 189 (276)
T 4hbd_A 110 NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALML 189 (276)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHH
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 99879999987799999999997799767788889998899999988630215999999997699764669899879999
Q ss_pred HHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCC-CCCCCC
Q ss_conf 9980999999999725999743333554320003655785579964799998489899730999889999605-999887
Q 005567 468 AVRKNSRPLVDLLLRFVPLEVSDRLGSENKALVDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTD-DPGMVG 546 (691)
Q Consensus 468 Av~~g~~~iVelLL~~g~~~~~d~~a~~~~~~~~~~~~~~~f~vn~~d~~G~TPLHlAA~~~G~~evV~~LL~-~p~~~g 546 (691)
|+..|+.++|++|+++|+ ++|.+|..|+||||+|+. .|+.+++++|++ .
T Consensus 190 A~~~g~~~~v~~Ll~~ga------------------------d~n~~d~~G~TpLh~A~~-~g~~~iv~~Ll~~~----- 239 (276)
T 4hbd_A 190 AVSHGRVDVVKALLACEA------------------------DVNVQDDDGSTALMCACE-HGHKEIAGLLLAVP----- 239 (276)
T ss_dssp HHHTTCHHHHHHHHHTTC------------------------CTTCCCTTSCCHHHHHHH-HTCHHHHHHHHTST-----
T ss_pred HHHCCCHHHHHHHHHCCC------------------------CCCCCCCCCCCHHHHHHH-CCCHHHHHHHHHCC-----
T ss_conf 998699999999996799------------------------998879999989999998-78899999998067-----
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 6533326799999999999983999999999986412
Q 005567 547 IEAWKNARDSSGSTPEDYARLRGHYSYIHLVQKKINK 583 (691)
Q Consensus 547 ~gA~~narD~~G~TPLh~A~~~Gh~~iv~lL~~k~~~ 583 (691)
|++++.+|..|.||+|+|+..|+.+++++|.++.+.
T Consensus 240 -gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~i 275 (276)
T 4hbd_A 240 -SCDISLTDRDGSTALMVALDAGQSEIASMLYSRMNI 275 (276)
T ss_dssp -TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCC
T ss_pred -CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf -999727489998999999986989999999863199
No 10
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=1.00 E-value=1 Score=144.88 Aligned_cols=122 Identities=22% Similarity=0.231 Sum_probs=71.3
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 32899987555089999987631147656799975000049970989999809999999997259997433335543200
Q 005567 420 KWLIEFSMDHEWCAVVKKLLHILLDGTVSLGEHPSLDLALTELGLLHRAVRKNSRPLVDLLLRFVPLEVSDRLGSENKAL 499 (691)
Q Consensus 420 ~~lL~fAv~~g~~avvk~LL~~l~~g~v~~~~~~~~~~~l~G~TpLH~Av~~g~~~iVelLL~~g~~~~~d~~a~~~~~~ 499 (691)
.++|++|+..++..+++.|++..++ ++ ..+..|.||||+|+..|+.++|++|+++|+
T Consensus 279 ~t~L~~A~~~~~~~~~~~Ll~~g~~--~~-------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-------------- 335 (437)
T 1n11_A 279 LTPLHLVAQEGHVPVADVLIKHGVM--VD-------ATTRMGYTPLHVASHYGNIKLVKFLLQHQA-------------- 335 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCC--TT-------CCCSSCCCHHHHHHHSSCSHHHHHHHHTTC--------------
T ss_pred CCHHHHHHHCCCHHHHHHHHHCCCC--CC-------CCCCCCCCHHHHHHHCCCHHHHHHHHHCCC--------------
T ss_conf 9799999984999999999848756--78-------879999889999998694999999996699--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Q ss_conf 03655785579964799998489899730999889999605999887653332679999999999998399999999998
Q 005567 500 VDGVHKGFLFRPDVIGPAGLTPIHIAAGKDGSEDVLDALTDDPGMVGIEAWKNARDSSGSTPEDYARLRGHYSYIHLVQK 579 (691)
Q Consensus 500 ~~~~~~~~~f~vn~~d~~G~TPLHlAA~~~G~~evV~~LL~~p~~~g~gA~~narD~~G~TPLh~A~~~Gh~~iv~lL~~ 579 (691)
++|.++..|+||||+|+. .|+.+++++|++. ||+++.+|..|.||+++|...|+.+++++|..
T Consensus 336 ----------d~n~~~~~g~t~L~~A~~-~g~~~iv~~Ll~~------ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~ 398 (437)
T 1n11_A 336 ----------DVNAKTKLGYSPLHQAAQ-QGHTDIVTLLLKN------GASPNEVSSDGTTPLAIAKRLGYISVTDVLKV 398 (437)
T ss_dssp ----------CTTCCCTTSCCHHHHHHH-TTCHHHHHHHHHT------TCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ----------CCCCCCCCCCCHHHHHHH-CCHHHHHHHHHHC------CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf ----------999889999889999998-7819999999977------68998878998989999988495899999986
Q ss_pred HH
Q ss_conf 64
Q 005567 580 KI 581 (691)
Q Consensus 580 k~ 581 (691)
..
T Consensus 399 ~~ 400 (437)
T 1n11_A 399 VT 400 (437)
T ss_dssp HC
T ss_pred CC
T ss_conf 02
Done!