Citrus Sinensis ID: 005568

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690

MGSHGKTSKSKRENSSSKRSRSERKRYDDSSSELESKSASYNSSDESPERSSRKRQERTKSKRNRHDRESDSSEDDGRRSKSNRRSRDSDSSDDDSNESDHDHRKRKSSRNITEEEIAEYLAKKAQRKAAKVAKKLRAQKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNDAGNFSPEPVLEDTQEAEKEAGSFSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

cccccccccccccccccHHHHHHHcccccccHHHHHcccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEccccccEEEEEEEcccccHHHHHHHccccccccccccccccccccEEEEEEEEEEccccc

cccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccccEEEcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHcccccHHHHHHHHHcccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEccccccccccHHHccHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHccccHHccccccccHHHHHHHHHHcccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHcccccccccccccccHHccccccccccEEEEEcccEcccccccccccccccccEEEEEEEEEEcccccccccccEEEEEEccccccEEEEEEEccccHHHHEEEEEcccHHHHcccccEEEccccEEEEEEEEEEEEEcc

mgshgktskskrenssskrsrserkryddssselesksasynssdesperssrkrqertkskrnrhdresdsseddgrrsksnrrsrdsdssdddsnesdhdhrkrkssrniTEEEIAEYLAKKAQRKAAKVAKKLRAQKvsgysndsnpfgdsnlneRFVWRKKierdvsqgvpleefsVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCkhlsgsddldieinepymvfkGLTVKEMEELRDDIKMYLdldratptHVEYWEALMVVCDWELAEARKKDALDRarvrgeqppaellaeerglhSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRleqpsevakfetdldsmpeaeviehddndagnfspepvledTQEAEKEagsfspellhgdddeeaidpdeDRALLERKRIAVLEDQQRRIQEAmaskptpsddnFELKAMKAMGAmeegdavfgsgaevnldsqvywwhdkyrprkpkyfnrvhtgyewnkynqthydhdnpppkivqgykfnifypdlvdktkaptytiekdgsngetciirfhagppyedIAFKIVNKEWeyshkkgfkctfeRGILHVYfnfkryryrr

mgshgktskskrenssskrsrserkryddssselesksasynssdesperssrkrqertkskrnrhdresdsseddgrrsksnrrsrdsdssdddsnesdhdhrkrkssrniteeEIAEYLAKKAQRKAAKVAKKLraqkvsgysndsnpfgdsnLNERFVWRKKIerdvsqgvpleefsvkaekkrqrermaeiekvkkrreeralekarheEEMALLARERARAEFQDWEkkeeefhfdqskvrseirlregrlkpiDVLCKHlsgsddldieinEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDAldrarvrgeqppaellaeerglhssIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNDAGNFSPEPVLEDTQEAEKEAGSfspellhgdddeeaidPDEDRALLERKRIAVLEDQQRRIQeamaskptpsddnFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYtiekdgsngeTCIIRFHAGPPYEDIAFKIVNKEWEYSHKkgfkctfergilhvyfnfkryryrr

MGSHGktskskrenssskrsrserkryddssselesksasynssDESPERSSRKRQERTKSKRNrhdresdsseddgrrsksnrrsrdsdssdddsnesdhdhrKRKSSRNITEEEIAEYlakkaqrkaakvakklraqkvSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSVKAEKKRQRERMaeiekvkkrreeralekarheeemallareraraeFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNDAGNFSPEPVLEDTQEAEKEAGSFSPELLHGdddeeaidpdedRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

**************************************************************************************************************************************************************RFVWRKKI**********************************************************************************IRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEA**************************************L******ELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKH***************************************************************************************************************************AVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRY**

***************************************************************************************************************************************************SNPFGDSNLNERFV************************************************************************************************PIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAE**************************************LLDGKTHKELE*******************YWEAILKRLHIYKAKACLKEIHAKML*********************************************************************************************************************************GSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

***************************************************************************************************************ITEEEIAEYLAK***************QKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSV***************KVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNDAGNFSPEPVL************FSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

*************************************************************************************************************************A*KA*RKAA*****LRAQKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDA*******************R*LHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVA*****************************************GSFSPELLH*****EAIDPDEDRALLERKRIAVL************************KAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MGSHGKTSKSKRENSSSKRSRSERKRYDDSSSELESKSASYNSSDESPERSSRKRQERTKSKRNRHDRESDSSEDDGRRSKSNRRSRDSDSSDDDSNESDHDHRKRKSSRNITEEEIAEYLAKKAQRKAAKVAKKLRAQKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSVKAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNDAGNFSPEPVLEDTQEAEKEAGSFSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		690	2.2.26 [Sep-21-2011]
F1Q8W0		835	Cactin OS=Danio rerio GN=	yes	no	0.749	0.619	0.403	1e-117
Q8WUQ7		758	Cactin OS=Homo sapiens GN	yes	no	0.749	0.682	0.408	1e-117
Q9CS00		772	Cactin OS=Mus musculus GN	yes	no	0.752	0.672	0.413	1e-116
Q9VR99		720	Cactin OS=Drosophila mela	yes	no	0.792	0.759	0.379	1e-110
G5EG14		657	Cactin OS=Caenorhabditis	yes	no	0.773	0.812	0.329	4e-81
B6KG46		703	Cactin OS=Toxoplasma gond	N/A	no	0.831	0.816	0.338	7e-81
O14342		517	Uncharacterized protein C	yes	no	0.602	0.804	0.279	5e-42

>sp\|F1Q8W0\|CATIN_DANRE Cactin OS=Danio rerio GN=cactin PE=2 SV=1	Back alignment and function desciption

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/614 (40%), Positives = 363/614 (59%), Gaps = 97/614 (15%)

Query: 143 GYSNDSNPFGDSNLNERFVWRKKIERDVSQGVP-LEEFSVKAEKKR-QRERMAEIEKVKK 200
           GY+N  NPFGD+NL   F+W+K +E+   +G+  L E ++K   K  Q E   E++KVK+
Sbjct: 253 GYTNADNPFGDNNLLGTFIWQKALEK---KGIGHLSEKNLKDRNKHIQEENRRELQKVKQ 309

Query: 201 RREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPID 260
            R ER  EKA  E+E+ +L RE+    F+ W ++E+ FH  Q+K+RS+IR+R+GR KPID
Sbjct: 310 LRLEREREKAMREQELEMLQREKEAEHFKTWAEQEDNFHLHQAKLRSKIRIRDGRAKPID 369

Query: 261 VLCKHLSG-SDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALM 319
           +L K++S   DDL +E++EPY    GLTV +ME+L +DIK+Y++L+     +V++W  + 
Sbjct: 370 LLAKYISAEDDDLSVEMHEPYTFLNGLTVTDMEDLLEDIKVYMELE--CGKNVDFWRDMT 427

Query: 320 VVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEAL 379
            + + E+++ RK +A  +        P +      G+++S+  DV+++  GKT+ +L+AL
Sbjct: 428 TITEDEISKLRKLEASGKG-------PGD---RREGINTSVSTDVQSVFKGKTYSQLQAL 477

Query: 380 QTKIELQMRAGTAKV-VEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRL--------- 429
              IE +++AG + + + YWE++L+++ +Y A+A L+E H  +LR+ L +L         
Sbjct: 478 YMNIESKIQAGGSNLDIGYWESLLQQVRVYMARARLRERHQDVLRQKLYKLKQEQGVESE 537

Query: 430 ------------EQP---------------SEVAKFETDLD----------------SMP 446
                       EQP               S+ A  E D D                S P
Sbjct: 538 PLFPIIKEEPEKEQPISREAGSGEEEAGSSSQQADREEDEDRRSRRTGGEEAERSGRSSP 597

Query: 447 EAEVIEHDDNDAGNFSPEPVLED-----TQEAEKEAGSFSPELLHGDD---DEEAIDPDE 498
           E E    ++    + +PE VL +       +AE ++G +SP LL   +   D   I  +E
Sbjct: 598 EEEKKGEEEEGEKDEAPEAVLTEEDLIQQSQAEYDSGRYSPTLLQNSELPLDTHIIAEEE 657

Query: 499 D--RALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAE 556
           D  R LL R+++ V  D         AS+   ++D F  +A + MG  E   +V     E
Sbjct: 658 DLQRLLLARRQMQVTGD---------ASES--AEDLFVRRAKEGMGGDEAQFSV-----E 701

Query: 557 VNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPD 616
           + L  ++Y W DKYRPRKP++FNRVHTG+EWNKYNQTHYD DNPPPKIVQGYKFNIFYPD
Sbjct: 702 MPLTGKMYLWADKYRPRKPRFFNRVHTGFEWNKYNQTHYDFDNPPPKIVQGYKFNIFYPD 761

Query: 617 LVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGI 676
           L+DK   P Y +E    N +  I+RFHAGPPYEDIAFKIVN+EWEYSH+ GF+C F  GI
Sbjct: 762 LIDKRSTPQYFLEPCPDNKDFGILRFHAGPPYEDIAFKIVNREWEYSHRHGFRCQFANGI 821

Query: 677 LHVYFNFKRYRYRR 690
             ++F+FKRYRYRR
Sbjct: 822 FQLWFHFKRYRYRR 835

May be involved in the regulation of innate immune response (By similarity). Plays a role during early embryonic development. Involved in the formation of the anteroposterior axis with important roles also in neural development.
Danio rerio (taxid: 7955)

>sp\|Q8WUQ7\|CATIN_HUMAN Cactin OS=Homo sapiens GN=CACTIN PE=1 SV=3	Back alignment and function description

>sp\|Q9CS00\|CATIN_MOUSE Cactin OS=Mus musculus GN=Cactin PE=1 SV=2	Back alignment and function description

>sp\|Q9VR99\|CATIN_DROME Cactin OS=Drosophila melanogaster GN=cactin PE=1 SV=3	Back alignment and function description

>sp\|G5EG14\|CATIN_CAEEL Cactin OS=Caenorhabditis elegans GN=cacn-1 PE=1 SV=1	Back alignment and function description

>sp\|B6KG46\|CATIN_TOXGO Cactin OS=Toxoplasma gondii GN=CACTIN PE=1 SV=1	Back alignment and function description

>sp\|O14342\|YB3C_SCHPO Uncharacterized protein C2F12.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2F12.12c PE=4 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		690
357510885		648	Cactin (ISS) [Medicago truncatula] gi\|35	0.849	0.904	0.843	0.0
225441082		654	PREDICTED: uncharacterized protein C19or	0.846	0.892	0.856	0.0
356572506		673	PREDICTED: uncharacterized protein C19or	0.849	0.870	0.840	0.0
449440173		681	PREDICTED: cactin-like [Cucumis sativus]	0.846	0.857	0.826	0.0
449501007		686	PREDICTED: cactin-like [Cucumis sativus]	0.846	0.851	0.821	0.0
356505297		670	PREDICTED: uncharacterized protein C19or	0.847	0.873	0.833	0.0
147838150		682	hypothetical protein VITISV_008915 [Viti	0.827	0.837	0.846	0.0
357440277		658	Cactin (ISS) [Medicago truncatula] gi\|35	0.842	0.882	0.821	0.0
297843202		671	hypothetical protein ARALYDRAFT_333714 [	0.957	0.985	0.717	0.0
15219589		672	uncharacterized protein [Arabidopsis tha	0.836	0.858	0.785	0.0

>gi\|357510885\|ref\|XP_003625731.1\| Cactin (ISS) [Medicago truncatula] gi\|355500746\|gb\|AES81949.1\| Cactin (ISS) [Medicago truncatula]	Back alignment and taxonomy information

 Score = 1038 bits (2683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/596 (84%), Positives = 544/596 (91%), Gaps = 10/596 (1%)

Query: 104 RKRKSSRNITEEEIAEYLAKKAQRKAAKVAKKLRAQKVSGYSNDSNPFGDSNLNERFVWR 163
           RK+KSSR ITEEEI++Y+AKKAQRKA KVAKKL+   VSGYSNDSNPFGD+NLNE+FVWR
Sbjct: 54  RKKKSSRTITEEEISQYMAKKAQRKATKVAKKLKTNTVSGYSNDSNPFGDTNLNEKFVWR 113

Query: 164 KKIERDVSQGVPLEEFSVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARER 223
           KKIERDV+QGV ++ FSVKAEKKRQ ERMAEIEKVKKRREERALEKA+HEEEMALLARER
Sbjct: 114 KKIERDVTQGVSIDSFSVKAEKKRQVERMAEIEKVKKRREERALEKAQHEEEMALLARER 173

Query: 224 ARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVF 283
           ARAEFQDWEKKEEEFHFDQSKVRSEIRLREGR +PIDVL KHL+GSDDLDIEINEPYMVF
Sbjct: 174 ARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVF 233

Query: 284 KGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGE 343
           KGLTVKEM ELRDDIKM+LDLDRATPTHVEYWEAL+VVCDWELAE+RKKDA+DRARVRGE
Sbjct: 234 KGLTVKEMSELRDDIKMHLDLDRATPTHVEYWEALLVVCDWELAESRKKDAIDRARVRGE 293

Query: 344 QPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILK 403
           +PPAELLAE+RGLHSS+E DV++LL GKT  ELEALQ  IE +MR GTAKVVEYWEAILK
Sbjct: 294 EPPAELLAEQRGLHSSVEPDVKDLLHGKTRTELEALQAHIESEMRTGTAKVVEYWEAILK 353

Query: 404 RLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVA-KFETDLDSMPEAEVIE-HDDNDAG-- 459
            LHIYKAKACLKEIHAKMLRKHLQRLEQP E   K E  LD +PE    E  +D DA   
Sbjct: 354 HLHIYKAKACLKEIHAKMLRKHLQRLEQPLEDEDKPERALDMIPEEAYTEDEEDEDAKVV 413

Query: 460 -----NFSPEPVLEDTQEAEKEAGSFSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQ 514
                +FSPEPV E+ QEAE EAGSFSP+LLH D++EEAIDP+ED+A+LERKR+AV+E+Q
Sbjct: 414 RSADESFSPEPVREN-QEAEDEAGSFSPQLLHDDENEEAIDPEEDKAILERKRMAVMEEQ 472

Query: 515 QRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRK 574
           QRRIQEAMASKP PS+DN ELKA KAMGAME+GDAVFGSGAEV+LDSQVYWWHDKYRPRK
Sbjct: 473 QRRIQEAMASKPAPSEDNLELKAFKAMGAMEDGDAVFGSGAEVSLDSQVYWWHDKYRPRK 532

Query: 575 PKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSN 634
           PKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDK KAP YTIEKDGSN
Sbjct: 533 PKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKIKAPNYTIEKDGSN 592

Query: 635 GETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 690
           GETCIIRFHAGPPYEDIAF+IVNKEWEYSHKKGFKCTFERGILHVYFNFKR+RYRR
Sbjct: 593 GETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR 648

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225441082\|ref\|XP_002264567.1\| PREDICTED: uncharacterized protein C19orf29 homolog [Vitis vinifera] gi\|297740019\|emb\|CBI30201.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356572506\|ref\|XP_003554409.1\| PREDICTED: uncharacterized protein C19orf29 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|449440173\|ref\|XP_004137859.1\| PREDICTED: cactin-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449501007\|ref\|XP_004161252.1\| PREDICTED: cactin-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356505297\|ref\|XP_003521428.1\| PREDICTED: uncharacterized protein C19orf29-like [Glycine max]	Back alignment and taxonomy information

>gi\|147838150\|emb\|CAN74141.1\| hypothetical protein VITISV_008915 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357440277\|ref\|XP_003590416.1\| Cactin (ISS) [Medicago truncatula] gi\|355479464\|gb\|AES60667.1\| Cactin (ISS) [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297843202\|ref\|XP_002889482.1\| hypothetical protein ARALYDRAFT_333714 [Arabidopsis lyrata subsp. lyrata] gi\|297335324\|gb\|EFH65741.1\| hypothetical protein ARALYDRAFT_333714 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15219589\|ref\|NP_171887.1\| uncharacterized protein [Arabidopsis thaliana] gi\|4204304\|gb\|AAD10685.1\| Hypothetical protein [Arabidopsis thaliana] gi\|332189511\|gb\|AEE27632.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		690
UNIPROTKB\|Q8WUQ7		758	CACTIN "Cactin" [Homo sapiens	0.356	0.324	0.486	6.5e-104
ZFIN\|ZDB-GENE-060503-322		530	cactin "cactin" [Danio rerio (	0.342	0.445	0.496	5.3e-100
DICTYBASE\|DDB_G0279317		727	DDB_G0279317 "unknown" [Dictyo	0.195	0.185	0.698	7.9e-96
FB\|FBgn0031114		720	cactin "cactin" [Drosophila me	0.769	0.737	0.359	1.6e-93
UNIPROTKB\|F1MB35		763	C7H19orf29 "Uncharacterized pr	0.762	0.689	0.369	2.3e-87
UNIPROTKB\|F1PZX0		752	CACTIN "Uncharacterized protei	0.763	0.700	0.373	6e-87
MGI\|MGI:1917562		772	Cactin "cactin, spliceosome C	0.766	0.685	0.363	7.7e-87
RGD\|1563634		764	Cactin "cactin, spliceosome C	0.762	0.688	0.367	2.6e-86
UNIPROTKB\|B6KG46		703	CACTIN "Cactin" [Toxoplasma go	0.426	0.418	0.412	3.3e-74
WB\|WBGene00012230		657	cacn-1 [Caenorhabditis elegans	0.372	0.391	0.413	2.3e-70

UNIPROTKB\|Q8WUQ7 CACTIN "Cactin" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

 Score = 596 (214.9 bits), Expect = 6.5e-104, Sum P(2) = 6.5e-104
 Identities = 128/263 (48%), Positives = 163/263 (61%)

Query:   433 SEVAKFETDLDSMPEAEVIEHDDNDAGNFSPEPVL--EDT-QEA--EKEAGSFSPELLHG 487
             SE    E ++D     E  + D +  G    E VL  ED  Q++  + +AG +SP LL  
Sbjct:   508 SEGGPAEAEVDGATPTEG-DGDGDGEGEGEGEAVLMEEDLIQQSLDDYDAGRYSPRLLTA 566

Query:   488 XXXXXXXXXXXXRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEG 547
                            L+R +   L  QQ ++    AS+   ++D F  +A + MG   + 
Sbjct:   567 HELPLDAHVLEPDEDLQRLQ---LSRQQLQVT-GDASES--AEDIFFRRAKEGMG---QD 617

Query:   548 DAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQG 607
             +A F    E+ L  + Y W DKYRPRKP++FNRVHTG+EWNKYNQTHYD DNPPPKIVQG
Sbjct:   618 EAQFS--VEMPLTGKAYLWADKYRPRKPRFFNRVHTGFEWNKYNQTHYDFDNPPPKIVQG 675

Query:   608 YKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKG 667
             YKFNIFYPDL+DK   P Y +E    N +  I+RFHAGPPYEDIAFKIVN+EWEYSH+ G
Sbjct:   676 YKFNIFYPDLIDKRSTPEYFLEACADNKDFAILRFHAGPPYEDIAFKIVNREWEYSHRHG 735

Query:   668 FKCTFERGILHVYFNFKRYRYRR 690
             F+C F  GI  ++F+FKRYRYRR
Sbjct:   736 FRCQFANGIFQLWFHFKRYRYRR 758

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0034122 "negative regulation of toll-like receptor signaling pathway" evidence=IDA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IDA

GO:0071347 "cellular response to interleukin-1" evidence=IDA

GO:0071356 "cellular response to tumor necrosis factor" evidence=IDA

GO:0032717 "negative regulation of interleukin-8 production" evidence=IDA

GO:0032720 "negative regulation of tumor necrosis factor production" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0031665 "negative regulation of lipopolysaccharide-mediated signaling pathway" evidence=IMP

GO:0032688 "negative regulation of interferon-beta production" evidence=IMP

GO:0060339 "negative regulation of type I interferon-mediated signaling pathway" evidence=IMP

GO:0001933 "negative regulation of protein phosphorylation" evidence=IMP

ZFIN\|ZDB-GENE-060503-322 cactin "cactin" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0279317 DDB_G0279317 "unknown" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0031114 cactin "cactin" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MB35 C7H19orf29 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PZX0 CACTIN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1917562 Cactin "cactin, spliceosome C complex subunit" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1563634 Cactin "cactin, spliceosome C complex subunit" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|B6KG46 CACTIN "Cactin" [Toxoplasma gondii (taxid:5811)]	Back alignment and assigned GO terms

WB\|WBGene00012230 cacn-1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		690
pfam09732		125	pfam09732, CactinC_cactus, Cactus-binding C-termin	1e-88
smart01050		129	smart01050, CactinC_cactus, Cactus-binding C-termi	2e-73
pfam10312		190	pfam10312, Cactin_mid, Conserved mid region of cac	1e-63
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	7e-05
PRK12678		672	PRK12678, PRK12678, transcription termination fact	2e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
TIGR01642		509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	7e-04
PRK12678		672	PRK12678, PRK12678, transcription termination fact	0.002
TIGR00844		810	TIGR00844, c_cpa1, na(+)/h(+) antiporter	0.003
PRK12678		672	PRK12678, PRK12678, transcription termination fact	0.004
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004

>gnl\|CDD\|192352 pfam09732, CactinC_cactus, Cactus-binding C-terminus of cactin protein	Back alignment and domain information

 Score =  272 bits (697), Expect = 1e-88
 Identities = 91/125 (72%), Positives = 107/125 (85%)

Query: 566 WHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPT 625
           W DKYRPRKP+YFNRV TG++WNKYNQTHYD DNPPPK VQGYKFNIFYPDL+DK KAP 
Sbjct: 1   WSDKYRPRKPRYFNRVKTGFDWNKYNQTHYDSDNPPPKTVQGYKFNIFYPDLIDKGKAPR 60

Query: 626 YTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKR 685
           Y IE      +TC++RFHAGPPYEDIAF+IVNKEW+YS K+GF+ +F+ G+L +YFNFK+
Sbjct: 61  YRIEPCEDPDDTCLLRFHAGPPYEDIAFRIVNKEWDYSRKRGFRSSFDNGVLQLYFNFKK 120

Query: 686 YRYRR 690
            RYRR
Sbjct: 121 LRYRR 125

CactinC_cactus is the C-terminal 200 residues of the cactin protein which are necessary for the association of cactin with IkappaB-cactus as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo. Most members of the family also have a Cactin_mid domain pfam10312 further upstream. Length = 125

>gnl\|CDD\|214996 smart01050, CactinC_cactus, Cactus-binding C-terminus of cactin protein	Back alignment and domain information

>gnl\|CDD\|220686 pfam10312, Cactin_mid, Conserved mid region of cactin	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		690
KOG2370		623	consensus Cactin [Signal transduction mechanisms]	100.0
PF09732		125	CactinC_cactus: Cactus-binding C-terminus of cacti	100.0
PF10312		191	Cactin_mid: Conserved mid region of cactin; InterP	100.0
KOG2370		623	consensus Cactin [Signal transduction mechanisms]	97.65
KOG0227		222	consensus Splicing factor 3a, subunit 2 [RNA proce	96.18
COG5246		222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	95.85
TIGR01642		509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	95.8
KOG4676		479	consensus Splicing factor, arginine/serine-rich [R	94.6
KOG4676		479	consensus Splicing factor, arginine/serine-rich [R	94.45
KOG0835		367	consensus Cyclin L [General function prediction on	93.84
KOG4368		757	consensus Predicted RNA binding protein, contains	93.16
TIGR01642		509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	93.04
TIGR01622		457	SF-CC1 splicing factor, CC1-like family. A homolog	92.12
KOG1847		878	consensus mRNA splicing factor [RNA processing and	91.54
KOG2888		453	consensus Putative RNA binding protein [General fu	90.56
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	89.84
PF10312		191	Cactin_mid: Conserved mid region of cactin; InterP	86.7
KOG0147		549	consensus Transcriptional coactivator CAPER (RRM s	84.99
KOG2548		653	consensus SWAP mRNA splicing regulator [RNA proces	83.77

>KOG2370 consensus Cactin [Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=4.5e-183  Score=1446.57  Aligned_cols=563  Identities=50%  Similarity=0.880  Sum_probs=491.3

Q ss_pred             hhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccccchhhhhhhcCCChhhhhHHH
Q 005568          104 RKRKSSRNITEEEIAEYLAKKAQRKAAKVAKKLRAQKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSVKA  183 (690)
Q Consensus       104 ~~~~~~~~~~eek~~~~~~kk~~k~a~~~~~kl~~~~~~gYTne~NPFGD~nLt~~FVW~KK~Eke~~~gls~~e~~~k~  183 (690)
                      ++.+++...+|||++++|++|++|+|.+.+++++++.+.||||++|||||+|||.||||+||+|++|..|+|+.++++..
T Consensus        41 Kee~k~~e~~EEKrarrm~kK~~K~a~R~~~~~~d~~~~~YsN~~npF~DSnLT~tFvw~kklere~~rgls~~ef~~~~  120 (623)
T KOG2370|consen   41 KEESKSKEYSEEKRARRMSKKAQKKALRAAKKLKDQSVSGYSNDSNPFGDSNLTRTFVWGKKLEREGSRGLSPREFRVSN  120 (623)
T ss_pred             hhhhhcccchHHHHHHHHHHHHHHHHHHHHhhcccccccCccCCCCCcccccchhheeccchhhhhcccCCChhhccHhh
Confidence            45566667899999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHhhhhhcccchhhhhhhhhhcCCCCcchhh
Q 005568          184 EKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARER-ARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVL  262 (690)
Q Consensus       184 ~~~r~~e~~~EiEkvKkRReeRE~Ek~~~Eee~~~l~R~r-e~~~~~eW~~kEd~FhL~Qak~RS~IRIregRaKPID~L  262 (690)
                      ...|+.+|+.|+++|||+|++|+.|++++|+++.|+||.+ ++.+|.+|..+|  |||+|+|+||.|||++|||||||+|
T Consensus       121 ~qrr~renl~evekvkk~reer~~eka~~Ede~mmlqrar~aa~qf~d~~~ke--Fh~dq~KlrseIrl~~Grak~idll  198 (623)
T KOG2370|consen  121 QQRRARENLPEVEKVKKRREERREEKAMQEDEFMMLQRARRAAIQFKDWRSKE--FHFDQDKLRSEIRLRPGRAKPIDLL  198 (623)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhccccccc--chhhhHhhhheeeecCCccchhhHH
Confidence            8788999999999999999999999999999999999999 999999999999  9999999999999999999999999


Q ss_pred             hhhccCCCCCCccccCchhhhcCCChHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHhHHHHHHHHHHhHHHhhhhcC
Q 005568          263 CKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRG  342 (690)
Q Consensus       263 ak~l~~~~d~~~e~~eP~~i~~gLt~~dleeL~~DIk~yl~LE~~~~~n~~fW~~m~vicedeL~~~rk~e~~~~~~~~G  342 (690)
                      +++|.+.+.++++|++||.||+||+++|||+|..||++|++||+ ++++++||++|++||+|+|+..+  .+..      
T Consensus       199 ~~~~dfgdeldmel~eP~~vlkg~~vedlEel~~dIk~y~ele~-~~kr~tyW~~v~~iv~delq~~~--~aqn------  269 (623)
T KOG2370|consen  199 KNYIDFGDELDMELSEPYSVLKGLKVEDLEELSRDIKDYQELET-NQKRLTYWKDVIMIVNDELQHNK--VAQN------  269 (623)
T ss_pred             HhhhcccchhhhhccChHHHHccCCHhHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHH--hhhh------
Confidence            99999999999999999999999999999999999999999998 68999999999999999998762  2211      


Q ss_pred             CCCchhhhhhhccCchhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005568          343 EQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKML  422 (690)
Q Consensus       343 ~~~~~~~~~~~~gi~~sV~~DI~~il~gKs~~eL~~LE~qI~~KL~Sge~iDveYWE~lL~~L~v~kAka~L~~~h~~~l  422 (690)
                              .++.+||++|..||..||.|||++||++|+.||++||.||.++|++||+.||.+|++|||+|+|+++|+.+|
T Consensus       270 --------sRgd~~haave~dv~~il~~Ks~~qL~eLe~qieaklrsns~~d~~YWedll~qLk~ykAra~Lke~h~e~L  341 (623)
T KOG2370|consen  270 --------SRGDKLHAAVEVDVRKILAGKSFEQLEELEAQIEAKLRSNSPLDTDYWEDLLNQLKSYKARARLKETHNEEL  341 (623)
T ss_pred             --------ccccceehhhhhhHHHHhCCcCHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    133569999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCchhhhcc-ccCCCCch-hhhhcc---cCCCC------CCCCCCCccccc---hHHhhhcCCC--CCCCCC
Q 005568          423 RKHLQRLEQPSEVAKFE-TDLDSMPE-AEVIEH---DDNDA------GNFSPEPVLEDT---QEAEKEAGSF--SPELLH  486 (690)
Q Consensus       423 ~~~l~~l~~~~~~~~~~-~~~~~~~~-~~~~~~---~~~~~------~~~~~~~~~~~~---~~~~~~~~~~--sp~~~~  486 (690)
                      +.+|..|++++..+..+ +++..... ++.+++   .+.++      ....+.|+.++.   ..+.+.+|+|  ||.+|+
T Consensus       342 r~~l~~Lk~e~~~e~~qevapqlkeemed~eee~~~~~~Dpel~e~e~a~~~r~l~~e~~d~~rel~~~gny~~S~~yi~  421 (623)
T KOG2370|consen  342 RIRLNKLKNEEWDEAFQEVAPQLKEEMEDREEELYIVPIDPELIEREQAIPRRPLPEELADYERELYDAGNYVKSPTYIP  421 (623)
T ss_pred             HHHHHHhhhhhhhhhhhhhChhhhhhhhcchhhcccCCCCCCccccccccCCCCCchHHHHHHHHHHHccccccCccccc
Confidence            99999999998777443 43332211 111111   11111      223333443211   2457889999  999999


Q ss_pred             CCCCCcCCCh-hHHHH-HHHHHHHHHHHHHH-HHHHHhhhCCCCCCChHHHHHHHHHhcccccCcccccCCcccccCCcc
Q 005568          487 GDDDEEAIDP-DEDRA-LLERKRIAVLEDQQ-RRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQV  563 (690)
Q Consensus       487 ~~~~~~~i~~-~~d~~-~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~E~~F~~~~e~~l~~~~  563 (690)
                      .++.+..++| +.+.. +|...+..+..++. .++-..+.+.++|.  .++|.|+ +..||+.+|++|+  +|++|++++
T Consensus       422 ~~~ptqa~dp~~p~~e~Ll~e~e~~~~~tqr~~R~~~~~ds~~aPq--e~em~a~-a~eGMq~~eaifg--aE~~Lda~~  496 (623)
T KOG2370|consen  422 ESDPTQAQDPTEPKNENLLNEDEDSIANTQRLERLYLQSDSAEAPQ--ELEMLAD-AVEGMQTDEAIFG--AEVNLDAEV  496 (623)
T ss_pred             CCCcccccCCCCcchhhhhhhhHHHHHHHHHHHHHhhcCCCcCCcH--HHHHHHH-HHhcccccchhcc--chhcccchh
Confidence            8877666666 33333 44444555544333 24444444555565  4445553 4556999999998  499999999


Q ss_pred             ccccccCCCCCCcccccccccccccccccccCCCCCCCCcccceeeEEeeccccCCCCCCCcEEEEeCCCCCCeEEEEEe
Q 005568          564 YWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFH  643 (690)
Q Consensus       564 y~W~dKYRPRKPrYFNRVhTGyEWNKYNQTHYD~DNPPPKiVQGYKFNIFYPDLIDKtkaPty~ie~~~~~~dtciIRF~  643 (690)
                      |||+||||||||+||||||||||||||||||||+|||||||||||||||||||||||++||||+|++|.+++||||||||
T Consensus       497 ~lw~DkyrprKP~YfNRVhtGfeWNkYNQtHyd~dnPPPKiVQGYkFNIFYPDLidk~~aP~y~ie~~~d~~d~ciIRF~  576 (623)
T KOG2370|consen  497 YLWHDKYRPRKPHYFNRVHTGFEWNKYNQTHYDEDNPPPKIVQGYKFNIFYPDLIDKGRAPTYRIERCRDKNDFCIIRFH  576 (623)
T ss_pred             hhhccCcCcCCcchhhhhccccccccccccccccCCCCchhhcceeecccchhhhccccCCeeeeeecCCCCceEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceeeeeecccccccCCCccccccccceEEEEEeeccccccC
Q 005568          644 AGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR  690 (690)
Q Consensus       644 AGPPYEDIAFrIVnrEWeyS~KrGFr~~FdrGILqL~FnFKr~rYRR  690 (690)
                      ||||||||||+|||||||||||+||||+|+||||||||+||||||||
T Consensus       577 aGpPYeDIAFkIVnkeWeyshKrGfKcqF~ngvlqL~F~FKk~ryRR  623 (623)
T KOG2370|consen  577 AGPPYEDIAFKIVNKEWEYSHKRGFKCQFDNGVLQLWFRFKKYRYRR  623 (623)
T ss_pred             cCCcchhhhhhhhcchhhhhhhcCccceeeCCeeeeeehhhhhhccC
Confidence            99999999999999999999999999999999999999999999998

>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex	Back alignment and domain information

>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins	Back alignment and domain information

>KOG2370 consensus Cactin [Signal transduction mechanisms]	Back alignment and domain information

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]	Back alignment and domain information

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]	Back alignment and domain information

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]	Back alignment and domain information

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]	Back alignment and domain information

>KOG0835 consensus Cyclin L [General function prediction only]	Back alignment and domain information

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]	Back alignment and domain information

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor	Back alignment and domain information

>TIGR01622 SF-CC1 splicing factor, CC1-like family	Back alignment and domain information

>KOG1847 consensus mRNA splicing factor [RNA processing and modification]	Back alignment and domain information

>KOG2888 consensus Putative RNA binding protein [General function prediction only]	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins	Back alignment and domain information

>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]	Back alignment and domain information

>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		690
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	2e-06
4dgw_C		231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 78.7 bits (193), Expect = 4e-15
 Identities = 87/672 (12%), Positives = 185/672 (27%), Gaps = 225/672 (33%)

Query: 93  DDDSNESDHDHRK------------------RKSSRNI-TEEEIAEYL-AKKAQRKAAKV 132
           D ++ E  + ++                   +   ++I ++EEI   + +K A     ++
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 133 AKKLRAQKVSGYSNDSNPFGDSNL--NERFVWRKKIERDVSQGVPLEEFSVKAEK----- 185
              L +++          F +  L  N +F+            +    +  + ++     
Sbjct: 68  FWTLLSKQEEMVQK----FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 186 ----KRQRERMAEIEKVKKRREERALEKARHEEEMAL----------LARERARAEFQDW 231
               K    R   ++   K R+  AL + R  + + +          +A +   +     
Sbjct: 124 QVFAKYNVSR---LQPYLKLRQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSY---- 174

Query: 232 EKKEEEFHF-----DQSKVRSEIRLREGRLKPIDVLCKHL--SGSDDLDIEINEPYMVFK 284
            K + +  F     +     S     E  L+ +  L   +  + +   D   N       
Sbjct: 175 -KVQCKMDFKIFWLNLKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKL---- 225

Query: 285 GLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMV---VCDWELAEARKKDALD-RARV 340
                 +  ++ +++  L           Y   L+V   V + +       +A +   ++
Sbjct: 226 -----RIHSIQAELRRLL-------KSKPYENCLLVLLNVQNAKAW-----NAFNLSCKI 268

Query: 341 ----RGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVE 396
               R +Q   + L+     H S++    +     T  E+++L  K  L  R        
Sbjct: 269 LLTTRFKQV-TDFLSAATTTHISLD----HHSMTLTPDEVKSLLLKY-LDCRPQD----- 317

Query: 397 YWEAILKRLHIYKAKACLKEIH-------AKMLRKHLQRLEQPSEVAKFETDLDSMPEAE 449
                L R      +      +       A+ +R  L   +                   
Sbjct: 318 -----LPR------EVL--TTNPRRLSIIAESIRDGLATWDN------------------ 346

Query: 450 VIEHDDNDAGNFSPEPVLEDTQEAEKEAGSFSPELLHGDDDEEAIDPDEDRALLERKRIA 509
             +H + D         L    E+     S              ++P E R + +R  ++
Sbjct: 347 -WKHVNCDK--------LTTIIES-----SL-----------NVLEPAEYRKMFDR--LS 379

Query: 510 VLEDQQRRIQEAMASKPTPSDDNFELKAMKAM-GAMEEGDA-------VFGSGAEVNLDS 561
           V                 P   +     +  +   + + D           S  E     
Sbjct: 380 VF----------------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 562 QVYWWHDKYRPRKPKYFNR--VHTGYEWNKYNQT-HYDHDNPPPKIVQGYKFNIFYPDLV 618
                   Y   K K  N   +H     + YN    +D D+  P  +  Y    FY  + 
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQY----FYSHIG 478

Query: 619 DKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAF---KIVNKEWEYSHKKGFKCTFERG 675
                  + ++         + R      + D  F   KI +                  
Sbjct: 479 -------HHLKNIEHPERMTLFR----MVFLDFRFLEQKIRH--------DSTAWNASGS 519

Query: 676 ILHVYFNFKRYR 687
           IL+     K Y+
Sbjct: 520 ILNTLQQLKFYK 531

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 231	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00