BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005569
(690 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 23/159 (14%)
Query: 109 LREVERLLDTIHVEIVNVHH--KISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSE 166
LRE++ L H I+ + + + S ++ EV+ I E M+ LH + S +H+
Sbjct: 57 LREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQY 116
Query: 167 LKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLAR 226
Q+ + +VL HG+N + + L N N D L++ + LAR
Sbjct: 117 FIYQTLRAVKVL----HGSNVIHRDLKPSNLLIN-------SNCD-----LKVCDFGLAR 160
Query: 227 ELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV 265
+D N E + TE VA R A EV+
Sbjct: 161 IID-----ESAADNSEPTGQQSGMTEYVATRWYRAPEVM 194
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 23/159 (14%)
Query: 109 LREVERLLDTIHVEIVNVHH--KISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSE 166
LRE++ L H I+ + + + S ++ EV+ I E M+ LH + S +H+
Sbjct: 57 LREIKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQTDLHRVISTQMLSDDHIQY 116
Query: 167 LKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLAR 226
Q+ + +VL HG+N + + L N N D L++ + LAR
Sbjct: 117 FIYQTLRAVKVL----HGSNVIHRDLKPSNLLIN-------SNCD-----LKVCDFGLAR 160
Query: 227 ELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV 265
+D N E + TE VA R A EV+
Sbjct: 161 IID-----ESAADNSEPTGQQSGMTEXVATRWYRAPEVM 194
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 385 LYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGIL----ENQLRDLEIQ 440
+YG +R E+ +++ D + +N L+ NN N + + L +++ D+E +
Sbjct: 127 IYGGRNRNGQIED-ISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFE 185
Query: 441 LQQAKVSSEASQEQQSMLYSAIW 463
Q K+ + ++Q+++ SA W
Sbjct: 186 PQIRKILLDVRPDRQTVMTSATW 208
>pdb|3IHU|A Chain A, Crystal Structure Of Dna Binding Protein (Yp_298823.1)
From Ralstonia Eutropha Jmp134 At 1.92 A Resolution
pdb|3IHU|B Chain B, Crystal Structure Of Dna Binding Protein (Yp_298823.1)
From Ralstonia Eutropha Jmp134 At 1.92 A Resolution
Length = 222
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 110 REVERLLDTIHVEIVNVHHKISSCKHLR 137
RE+ RL TIH IV+ H+++S + R
Sbjct: 155 RELRRLFPTIHXPIVHAQHRLASLRQXR 182
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHD-CEGSL 157
GI + +RE+ L + H IV ++ I + K L VF +++ KKL D CEG L
Sbjct: 42 GIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGL 97
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHD-CEGSL 157
GI + +RE+ L + H IV ++ I + K L VF +++ KKL D CEG L
Sbjct: 42 GIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGL 97
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHD-CEGSL 157
GI + +RE+ L + H IV ++ I + K L VF +++ KKL D CEG L
Sbjct: 42 GIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGL 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.126 0.329
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,409,343
Number of Sequences: 62578
Number of extensions: 591875
Number of successful extensions: 2184
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 2037
Number of HSP's gapped (non-prelim): 173
length of query: 690
length of database: 14,973,337
effective HSP length: 106
effective length of query: 584
effective length of database: 8,340,069
effective search space: 4870600296
effective search space used: 4870600296
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)