Query 005569
Match_columns 690
No_of_seqs 47 out of 49
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 01:32:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00261 Tropomyosin: Tropomyo 98.8 4.8E-08 1E-12 97.2 14.2 203 308-521 14-230 (237)
2 PRK02224 chromosome segregatio 98.3 0.0041 9E-08 71.4 36.4 178 339-534 319-506 (880)
3 KOG0161 Myosin class II heavy 98.1 0.004 8.7E-08 78.2 32.9 328 217-574 1489-1876(1930)
4 PRK02224 chromosome segregatio 98.1 0.006 1.3E-07 70.2 32.3 278 215-524 349-649 (880)
5 TIGR00606 rad50 rad50. This fa 98.0 0.014 3E-07 71.0 32.7 229 337-572 825-1078(1311)
6 KOG0161 Myosin class II heavy 97.9 0.02 4.3E-07 72.3 34.1 445 90-573 1003-1502(1930)
7 PF00261 Tropomyosin: Tropomyo 97.9 0.00018 3.9E-09 71.9 13.4 189 285-484 40-228 (237)
8 TIGR02169 SMC_prok_A chromosom 97.8 0.013 2.8E-07 68.0 28.3 52 209-260 151-205 (1164)
9 COG1196 Smc Chromosome segrega 97.8 0.0031 6.6E-08 75.7 23.4 261 340-600 771-1044(1163)
10 TIGR02169 SMC_prok_A chromosom 97.8 0.0091 2E-07 69.2 25.8 59 426-484 876-934 (1164)
11 TIGR02168 SMC_prok_B chromosom 97.6 0.0049 1.1E-07 70.8 20.4 117 427-543 882-1006(1179)
12 TIGR02168 SMC_prok_B chromosom 97.5 0.027 5.8E-07 64.9 24.2 26 375-400 753-778 (1179)
13 TIGR00606 rad50 rad50. This fa 97.4 0.42 9.1E-06 58.7 34.1 118 45-180 348-465 (1311)
14 PF10174 Cast: RIM-binding pro 97.4 0.029 6.3E-07 65.8 22.8 243 285-547 319-607 (775)
15 PHA02562 46 endonuclease subun 97.3 0.013 2.9E-07 63.6 18.3 102 425-526 299-403 (562)
16 KOG0996 Structural maintenance 97.0 0.15 3.2E-06 62.1 23.9 160 402-582 456-620 (1293)
17 KOG0971 Microtubule-associated 97.0 0.14 3E-06 61.1 22.8 266 295-573 217-557 (1243)
18 PRK04778 septation ring format 96.9 1.2 2.6E-05 50.3 30.8 162 275-446 196-369 (569)
19 KOG1003 Actin filament-coating 96.8 0.029 6.3E-07 56.8 14.1 136 338-480 50-192 (205)
20 COG1196 Smc Chromosome segrega 96.8 0.22 4.9E-06 60.3 23.2 180 367-553 833-1025(1163)
21 PF00038 Filament: Intermediat 96.5 0.34 7.4E-06 49.5 19.3 68 498-572 226-294 (312)
22 PF07888 CALCOCO1: Calcium bin 96.3 0.27 5.9E-06 56.1 19.0 187 303-521 137-330 (546)
23 PF01576 Myosin_tail_1: Myosin 96.2 0.0011 2.5E-08 77.5 0.0 209 342-563 575-807 (859)
24 KOG1003 Actin filament-coating 96.0 0.41 9E-06 48.8 16.6 182 333-573 3-197 (205)
25 PRK04863 mukB cell division pr 96.0 2.1 4.5E-05 54.1 25.8 62 203-264 271-332 (1486)
26 KOG4674 Uncharacterized conser 95.9 2.6 5.6E-05 54.1 25.8 319 222-572 651-1042(1822)
27 PHA02562 46 endonuclease subun 95.8 2.1 4.7E-05 46.9 22.3 86 333-418 298-386 (562)
28 PLN02939 transferase, transfer 95.6 0.15 3.3E-06 61.3 13.4 204 320-555 150-369 (977)
29 PF12718 Tropomyosin_1: Tropom 95.4 0.058 1.2E-06 51.4 7.8 132 378-562 2-136 (143)
30 PF01576 Myosin_tail_1: Myosin 95.3 0.0048 1E-07 72.5 0.0 230 334-567 363-614 (859)
31 PRK03918 chromosome segregatio 95.2 8.1 0.00018 45.0 31.0 62 452-520 632-698 (880)
32 PF05557 MAD: Mitotic checkpoi 94.9 0.0069 1.5E-07 69.3 0.0 185 373-572 227-423 (722)
33 PF09726 Macoilin: Transmembra 94.9 0.87 1.9E-05 53.3 16.7 102 369-478 545-654 (697)
34 KOG4674 Uncharacterized conser 94.9 4.7 0.0001 51.8 23.7 259 107-419 703-987 (1822)
35 PF14915 CCDC144C: CCDC144C pr 94.3 4.5 9.7E-05 43.7 18.8 97 460-573 193-289 (305)
36 KOG0946 ER-Golgi vesicle-tethe 94.3 0.89 1.9E-05 54.1 14.6 193 337-530 653-882 (970)
37 KOG0995 Centromere-associated 94.3 14 0.0003 43.0 23.7 143 332-479 408-572 (581)
38 PRK01156 chromosome segregatio 94.1 16 0.00035 43.1 29.8 12 263-274 452-463 (895)
39 PF07888 CALCOCO1: Calcium bin 93.8 16 0.00035 42.3 24.7 194 334-533 178-402 (546)
40 PF12718 Tropomyosin_1: Tropom 93.5 2.3 5.1E-05 40.7 13.7 39 334-372 35-73 (143)
41 PF10473 CENP-F_leu_zip: Leuci 93.5 2.1 4.6E-05 41.4 13.3 129 324-473 8-136 (140)
42 PRK11637 AmiB activator; Provi 93.1 15 0.00033 40.0 20.6 84 305-399 43-126 (428)
43 KOG0978 E3 ubiquitin ligase in 93.0 25 0.00054 41.9 25.0 242 276-573 380-639 (698)
44 PF09726 Macoilin: Transmembra 92.7 9.8 0.00021 45.0 19.7 75 453-527 538-619 (697)
45 PF06160 EzrA: Septation ring 92.3 25 0.00054 40.2 25.2 127 332-464 250-379 (560)
46 PF05701 WEMBL: Weak chloropla 92.3 24 0.00053 40.0 24.5 269 229-541 59-341 (522)
47 KOG0995 Centromere-associated 92.2 12 0.00026 43.5 19.1 101 457-560 443-547 (581)
48 KOG0996 Structural maintenance 92.1 41 0.0009 42.3 24.5 164 210-394 368-532 (1293)
49 PF12128 DUF3584: Protein of u 91.9 41 0.00088 41.9 29.7 47 277-329 581-627 (1201)
50 COG5185 HEC1 Protein involved 91.9 15 0.00032 42.3 18.9 327 209-559 218-587 (622)
51 KOG0018 Structural maintenance 91.7 14 0.0003 45.8 19.6 169 306-484 656-838 (1141)
52 KOG0994 Extracellular matrix g 91.2 9.8 0.00021 47.5 17.6 249 220-484 1456-1727(1758)
53 KOG0612 Rho-associated, coiled 91.2 22 0.00047 44.7 20.7 170 307-480 466-650 (1317)
54 KOG0976 Rho/Rac1-interacting s 90.8 30 0.00065 42.2 20.7 193 332-555 118-337 (1265)
55 PF05701 WEMBL: Weak chloropla 90.2 38 0.00082 38.5 28.2 202 300-518 272-479 (522)
56 KOG0994 Extracellular matrix g 90.1 65 0.0014 41.0 25.0 45 218-268 1334-1378(1758)
57 PF05335 DUF745: Protein of un 89.8 4.6 9.9E-05 40.8 11.6 109 318-448 62-174 (188)
58 KOG0977 Nuclear envelope prote 89.5 8.6 0.00019 44.5 14.8 240 242-520 45-314 (546)
59 PF09728 Taxilin: Myosin-like 89.5 33 0.00072 36.8 21.5 164 391-572 122-303 (309)
60 KOG0971 Microtubule-associated 88.9 19 0.00041 44.2 17.4 129 372-525 427-562 (1243)
61 PRK09039 hypothetical protein; 86.5 12 0.00027 40.3 13.1 27 371-397 76-102 (343)
62 PF14915 CCDC144C: CCDC144C pr 86.3 38 0.00081 37.0 16.3 210 254-516 85-299 (305)
63 PRK04863 mukB cell division pr 86.3 85 0.0018 40.5 21.8 39 481-521 421-461 (1486)
64 PF00038 Filament: Intermediat 85.3 49 0.0011 34.1 22.0 49 370-418 256-304 (312)
65 KOG0250 DNA repair protein RAD 85.2 1.1E+02 0.0025 38.3 22.2 43 231-279 158-200 (1074)
66 PRK11637 AmiB activator; Provi 84.8 66 0.0014 35.2 20.5 18 543-560 235-252 (428)
67 KOG0933 Structural maintenance 84.0 36 0.00079 42.2 16.4 164 334-519 294-465 (1174)
68 COG1579 Zn-ribbon protein, pos 83.7 31 0.00066 36.3 13.9 128 335-476 18-147 (239)
69 PF15070 GOLGA2L5: Putative go 83.3 97 0.0021 36.5 19.2 23 338-360 47-69 (617)
70 PF05622 HOOK: HOOK protein; 83.1 0.37 8E-06 55.6 0.0 76 442-517 345-427 (713)
71 PRK03918 chromosome segregatio 82.7 1.1E+02 0.0023 36.1 37.5 21 397-417 412-432 (880)
72 PRK10884 SH3 domain-containing 82.7 5.9 0.00013 40.3 8.3 78 336-437 88-165 (206)
73 KOG0933 Structural maintenance 82.5 66 0.0014 40.2 17.7 181 378-561 824-1021(1174)
74 TIGR02977 phageshock_pspA phag 81.4 64 0.0014 32.6 15.5 143 338-487 28-186 (219)
75 COG1842 PspA Phage shock prote 80.9 30 0.00065 35.8 12.6 147 332-487 23-186 (225)
76 KOG0250 DNA repair protein RAD 79.7 1.8E+02 0.0039 36.7 21.0 96 475-573 834-945 (1074)
77 PF14662 CCDC155: Coiled-coil 79.6 79 0.0017 32.7 14.8 141 338-482 40-187 (193)
78 PF04012 PspA_IM30: PspA/IM30 78.3 42 0.00091 33.3 12.4 86 440-525 99-188 (221)
79 TIGR03185 DNA_S_dndD DNA sulfu 78.2 1.4E+02 0.0031 34.7 24.8 78 334-416 391-468 (650)
80 KOG0946 ER-Golgi vesicle-tethe 78.0 1.8E+02 0.004 35.9 20.0 262 251-526 513-823 (970)
81 PRK11281 hypothetical protein; 77.6 46 0.001 41.6 14.9 51 346-396 126-176 (1113)
82 PF10174 Cast: RIM-binding pro 77.5 1.8E+02 0.0039 35.5 29.3 187 341-530 238-450 (775)
83 TIGR01005 eps_transp_fam exopo 76.6 1.3E+02 0.0029 35.1 17.6 181 334-525 201-406 (754)
84 PF04012 PspA_IM30: PspA/IM30 76.6 41 0.0009 33.3 11.8 147 333-488 23-186 (221)
85 KOG1899 LAR transmembrane tyro 76.3 14 0.00031 43.7 9.5 128 333-460 103-230 (861)
86 KOG0963 Transcription factor/C 76.1 1.8E+02 0.0039 34.8 25.2 266 143-469 17-326 (629)
87 PF05911 DUF869: Plant protein 76.0 63 0.0014 39.1 14.9 32 222-253 441-472 (769)
88 PF08317 Spc7: Spc7 kinetochor 76.0 19 0.00041 38.3 9.8 29 150-178 70-98 (325)
89 PRK09039 hypothetical protein; 75.8 40 0.00087 36.5 12.3 41 426-466 138-178 (343)
90 PF10473 CENP-F_leu_zip: Leuci 75.3 19 0.00041 35.1 8.8 72 503-574 18-92 (140)
91 PF05622 HOOK: HOOK protein; 73.0 1.1 2.4E-05 51.8 0.0 64 455-518 582-645 (713)
92 KOG0804 Cytoplasmic Zn-finger 72.6 36 0.00079 39.0 11.3 41 378-418 363-403 (493)
93 TIGR01005 eps_transp_fam exopo 72.2 86 0.0019 36.6 14.6 154 341-497 237-420 (754)
94 KOG0239 Kinesin (KAR3 subfamil 71.9 67 0.0014 38.2 13.7 140 425-576 175-317 (670)
95 PF09787 Golgin_A5: Golgin sub 71.5 1.2E+02 0.0027 34.4 15.2 149 371-545 248-403 (511)
96 PF06818 Fez1: Fez1; InterPro 71.3 1.3E+02 0.0027 31.4 13.9 157 342-566 11-167 (202)
97 PF05557 MAD: Mitotic checkpoi 71.3 13 0.00029 43.3 8.0 58 428-485 478-535 (722)
98 PF04156 IncA: IncA protein; 71.2 70 0.0015 30.9 11.6 41 377-417 110-150 (191)
99 smart00787 Spc7 Spc7 kinetocho 70.7 82 0.0018 34.1 13.1 46 307-352 145-190 (312)
100 PF08317 Spc7: Spc7 kinetochor 70.3 92 0.002 33.3 13.3 46 306-351 149-194 (325)
101 PF07926 TPR_MLP1_2: TPR/MLP1/ 69.7 98 0.0021 29.0 11.9 90 378-474 26-119 (132)
102 COG1579 Zn-ribbon protein, pos 69.2 1.5E+02 0.0032 31.5 14.1 119 441-559 33-153 (239)
103 TIGR00634 recN DNA repair prot 68.7 85 0.0019 35.8 13.4 189 368-572 167-370 (563)
104 PF05911 DUF869: Plant protein 68.2 2.9E+02 0.0063 33.8 19.8 79 310-388 593-671 (769)
105 KOG4438 Centromere-associated 67.7 2.3E+02 0.0051 32.6 20.5 210 333-570 172-429 (446)
106 PF09738 DUF2051: Double stran 67.4 65 0.0014 34.9 11.5 146 333-481 111-297 (302)
107 PF05266 DUF724: Protein of un 67.4 37 0.00081 34.3 9.2 105 290-395 81-185 (190)
108 PF03148 Tektin: Tektin family 67.3 2E+02 0.0044 31.6 16.3 185 306-524 134-346 (384)
109 COG0419 SbcC ATPase involved i 66.1 3.1E+02 0.0066 33.3 33.5 24 457-480 620-643 (908)
110 PRK10929 putative mechanosensi 66.1 2.1E+02 0.0045 36.2 16.7 52 401-459 262-313 (1109)
111 PF11559 ADIP: Afadin- and alp 65.5 33 0.00071 32.3 8.0 67 333-399 65-131 (151)
112 PF10168 Nup88: Nuclear pore c 63.6 35 0.00076 40.6 9.4 80 442-524 582-661 (717)
113 PRK10929 putative mechanosensi 63.5 1.4E+02 0.003 37.7 14.6 20 495-514 265-284 (1109)
114 COG5185 HEC1 Protein involved 63.4 3.1E+02 0.0066 32.3 16.9 97 332-438 449-546 (622)
115 COG0598 CorA Mg2+ and Co2+ tra 63.3 6.4 0.00014 41.4 3.2 29 662-690 292-322 (322)
116 KOG0612 Rho-associated, coiled 63.2 4.4E+02 0.0095 34.1 21.4 188 287-485 562-767 (1317)
117 KOG0964 Structural maintenance 63.1 3.4E+02 0.0074 34.4 17.2 319 106-562 677-998 (1200)
118 TIGR01843 type_I_hlyD type I s 62.9 2.1E+02 0.0045 30.2 17.3 19 500-518 251-269 (423)
119 TIGR01843 type_I_hlyD type I s 62.8 87 0.0019 32.9 11.2 33 462-498 248-280 (423)
120 PF04849 HAP1_N: HAP1 N-termin 62.4 1.1E+02 0.0023 33.6 12.0 123 336-478 162-287 (306)
121 PF04156 IncA: IncA protein; 62.0 94 0.002 30.0 10.5 12 426-437 159-170 (191)
122 PF13851 GAS: Growth-arrest sp 61.6 55 0.0012 33.1 9.1 94 376-480 27-120 (201)
123 PF06008 Laminin_I: Laminin Do 61.2 2E+02 0.0044 29.6 16.9 184 292-487 6-212 (264)
124 TIGR03017 EpsF chain length de 61.2 95 0.0021 33.6 11.4 141 333-477 177-335 (444)
125 TIGR03007 pepcterm_ChnLen poly 61.2 1.7E+02 0.0037 32.3 13.6 40 426-465 325-364 (498)
126 KOG0018 Structural maintenance 61.0 2E+02 0.0044 36.3 15.0 171 334-520 697-888 (1141)
127 PF05010 TACC: Transforming ac 60.8 2.1E+02 0.0046 29.6 14.9 124 342-476 10-134 (207)
128 PF07926 TPR_MLP1_2: TPR/MLP1/ 60.0 1E+02 0.0023 28.9 10.1 76 497-572 54-129 (132)
129 PF08614 ATG16: Autophagy prot 58.9 30 0.00065 34.2 6.7 49 368-416 136-184 (194)
130 TIGR03007 pepcterm_ChnLen poly 58.7 1.6E+02 0.0034 32.5 12.8 24 424-447 274-297 (498)
131 PRK11281 hypothetical protein; 57.5 5.1E+02 0.011 33.0 19.1 54 399-459 280-333 (1113)
132 PF15619 Lebercilin: Ciliary p 57.3 1.3E+02 0.0027 30.6 10.8 69 333-402 67-144 (194)
133 KOG0980 Actin-binding protein 57.2 2.5E+02 0.0053 35.1 14.7 123 342-464 390-533 (980)
134 KOG0982 Centrosomal protein Nu 56.8 67 0.0015 36.8 9.6 80 332-420 248-327 (502)
135 PRK01156 chromosome segregatio 56.5 4.2E+02 0.0091 31.7 29.8 44 395-444 451-495 (895)
136 PRK03947 prefoldin subunit alp 56.4 1.7E+02 0.0037 27.3 11.9 89 431-523 5-115 (140)
137 PF12128 DUF3584: Protein of u 56.4 5.1E+02 0.011 32.7 23.2 60 464-524 432-491 (1201)
138 cd07623 BAR_SNX1_2 The Bin/Amp 53.5 2.2E+02 0.0049 28.8 12.0 184 332-532 10-212 (224)
139 PF12240 Angiomotin_C: Angiomo 53.4 70 0.0015 33.3 8.4 123 304-442 26-153 (205)
140 TIGR00383 corA magnesium Mg(2+ 53.3 13 0.00028 38.3 3.3 31 659-690 286-318 (318)
141 PF15070 GOLGA2L5: Putative go 53.3 4.6E+02 0.01 31.2 16.4 85 488-572 293-384 (617)
142 PRK10698 phage shock protein P 53.1 2E+02 0.0044 29.5 11.6 85 348-442 99-183 (222)
143 PF10168 Nup88: Nuclear pore c 52.2 2.9E+02 0.0063 33.3 14.3 102 223-328 557-658 (717)
144 PRK09546 zntB zinc transporter 51.9 13 0.00029 38.9 3.2 29 662-690 294-324 (324)
145 PRK11085 magnesium/nickel/coba 51.8 37 0.00081 36.5 6.5 76 96-182 128-203 (316)
146 KOG1103 Predicted coiled-coil 51.2 4.3E+02 0.0092 30.2 14.4 119 346-473 165-286 (561)
147 PF13863 DUF4200: Domain of un 51.1 1.5E+02 0.0032 26.8 9.4 87 340-436 20-106 (126)
148 TIGR03185 DNA_S_dndD DNA sulfu 50.5 4.7E+02 0.01 30.5 24.1 131 425-563 300-457 (650)
149 PF10146 zf-C4H2: Zinc finger- 50.3 1.1E+02 0.0025 31.8 9.5 78 314-392 2-83 (230)
150 PF13851 GAS: Growth-arrest sp 49.4 3E+02 0.0065 28.0 15.5 152 307-471 28-189 (201)
151 PF02994 Transposase_22: L1 tr 48.9 4.9 0.00011 43.7 -0.5 54 469-522 139-192 (370)
152 PF05266 DUF724: Protein of un 48.5 2.2E+02 0.0048 28.9 10.9 79 306-384 59-146 (190)
153 TIGR03017 EpsF chain length de 48.0 1.6E+02 0.0035 31.8 10.6 93 456-558 211-303 (444)
154 PF08614 ATG16: Autophagy prot 47.9 1.1E+02 0.0024 30.3 8.7 114 460-573 67-183 (194)
155 PF09787 Golgin_A5: Golgin sub 47.6 4.8E+02 0.01 29.8 19.5 126 367-524 185-310 (511)
156 PF14073 Cep57_CLD: Centrosome 47.4 1.9E+02 0.0042 29.6 10.3 86 426-525 72-157 (178)
157 PF12301 CD99L2: CD99 antigen 47.2 16 0.00035 36.5 2.8 23 667-689 120-143 (169)
158 PF02994 Transposase_22: L1 tr 47.0 11 0.00023 41.2 1.6 60 375-441 136-195 (370)
159 TIGR00998 8a0101 efflux pump m 46.3 3E+02 0.0064 28.5 11.8 21 433-453 147-167 (334)
160 KOG4360 Uncharacterized coiled 46.1 3E+02 0.0066 32.5 12.6 44 343-386 200-250 (596)
161 PF03962 Mnd1: Mnd1 family; I 45.0 1E+02 0.0022 30.9 8.0 85 332-434 60-144 (188)
162 PF13514 AAA_27: AAA domain 43.7 7.4E+02 0.016 30.9 20.5 223 311-563 128-368 (1111)
163 PF07106 TBPIP: Tat binding pr 43.7 64 0.0014 31.1 6.2 55 309-363 33-101 (169)
164 PRK10884 SH3 domain-containing 42.4 1.5E+02 0.0033 30.4 8.8 32 370-401 133-164 (206)
165 smart00787 Spc7 Spc7 kinetocho 42.3 1.8E+02 0.0038 31.6 9.8 63 328-397 198-260 (312)
166 PF15294 Leu_zip: Leucine zipp 41.2 95 0.0021 33.6 7.5 70 375-444 131-209 (278)
167 PRK10476 multidrug resistance 40.9 2.2E+02 0.0048 30.0 10.1 49 342-397 87-135 (346)
168 PHA02414 hypothetical protein 40.5 66 0.0014 30.4 5.4 72 377-474 5-78 (111)
169 PF06785 UPF0242: Uncharacteri 40.3 3.4E+02 0.0074 30.7 11.5 131 385-516 122-262 (401)
170 PF09738 DUF2051: Double stran 39.8 2.5E+02 0.0055 30.6 10.4 153 376-560 77-238 (302)
171 PF06160 EzrA: Septation ring 39.7 6.6E+02 0.014 29.1 20.3 105 337-441 309-430 (560)
172 KOG1029 Endocytic adaptor prot 39.5 8.8E+02 0.019 30.5 20.1 106 334-450 444-553 (1118)
173 KOG4809 Rab6 GTPase-interactin 39.3 2.4E+02 0.0051 33.6 10.6 39 401-442 442-480 (654)
174 PF10186 Atg14: UV radiation r 38.9 4.2E+02 0.0092 26.7 12.7 25 369-393 84-108 (302)
175 TIGR01069 mutS2 MutS2 family p 38.4 1.3E+02 0.0027 36.3 8.7 81 371-474 510-590 (771)
176 PRK09343 prefoldin subunit bet 38.1 1.2E+02 0.0027 28.3 6.9 21 426-446 93-113 (121)
177 PRK10698 phage shock protein P 38.1 4.7E+02 0.01 26.9 14.9 154 333-487 24-186 (222)
178 cd00176 SPEC Spectrin repeats, 37.3 3.3E+02 0.0071 24.9 12.7 56 338-393 4-64 (213)
179 PHA00327 minor capsid protein 37.1 48 0.001 33.8 4.3 32 543-574 110-143 (187)
180 COG2433 Uncharacterized conser 37.0 74 0.0016 37.8 6.3 72 150-253 438-509 (652)
181 PRK10869 recombination and rep 36.9 6.5E+02 0.014 29.2 13.7 88 485-572 269-365 (553)
182 KOG0992 Uncharacterized conser 36.4 8.1E+02 0.018 29.2 15.0 154 312-479 241-415 (613)
183 PF12001 DUF3496: Domain of un 36.0 1.4E+02 0.0031 28.4 6.9 75 463-560 3-80 (111)
184 PF15397 DUF4618: Domain of un 35.3 2E+02 0.0044 30.8 8.7 125 394-562 10-145 (258)
185 PRK04778 septation ring format 35.0 7.7E+02 0.017 28.5 26.7 83 337-419 313-412 (569)
186 cd07627 BAR_Vps5p The Bin/Amph 34.4 5E+02 0.011 26.2 14.7 80 370-453 92-171 (216)
187 KOG4593 Mitotic checkpoint pro 34.2 9.6E+02 0.021 29.4 19.2 64 402-480 256-319 (716)
188 PF12252 SidE: Dot/Icm substra 34.2 4.3E+02 0.0093 34.0 12.1 206 255-479 963-1209(1439)
189 TIGR01010 BexC_CtrB_KpsE polys 34.1 6.1E+02 0.013 27.1 13.1 100 252-360 169-268 (362)
190 cd07627 BAR_Vps5p The Bin/Amph 33.7 2E+02 0.0043 28.9 8.1 59 306-368 112-170 (216)
191 KOG0239 Kinesin (KAR3 subfamil 33.5 7.2E+02 0.016 30.0 13.6 122 341-476 175-296 (670)
192 PF04508 Pox_A_type_inc: Viral 33.4 47 0.001 24.0 2.6 18 335-352 2-19 (23)
193 PRK11085 magnesium/nickel/coba 32.8 40 0.00087 36.3 3.2 26 374-399 137-162 (316)
194 PF15188 CCDC-167: Coiled-coil 32.8 22 0.00047 32.3 1.1 65 118-188 2-69 (85)
195 PF04508 Pox_A_type_inc: Viral 32.4 45 0.00097 24.1 2.3 20 502-521 1-20 (23)
196 PF01496 V_ATPase_I: V-type AT 32.3 76 0.0017 37.4 5.6 40 493-532 220-259 (759)
197 PF11559 ADIP: Afadin- and alp 32.0 2.4E+02 0.0053 26.6 7.9 42 370-411 67-108 (151)
198 PF13863 DUF4200: Domain of un 31.9 1.4E+02 0.003 27.0 6.1 85 436-520 22-106 (126)
199 PF12329 TMF_DNA_bd: TATA elem 31.7 1.1E+02 0.0023 26.8 5.0 60 428-487 1-67 (74)
200 TIGR00293 prefoldin, archaeal 31.7 3.2E+02 0.007 24.9 8.4 77 437-522 4-106 (126)
201 PF05667 DUF812: Protein of un 31.3 6.1E+02 0.013 30.1 12.4 22 454-475 445-466 (594)
202 TIGR01000 bacteriocin_acc bact 31.1 7.7E+02 0.017 27.4 17.3 29 461-489 237-265 (457)
203 cd07623 BAR_SNX1_2 The Bin/Amp 30.8 2.7E+02 0.0059 28.3 8.5 56 307-368 121-176 (224)
204 PF07544 Med9: RNA polymerase 30.6 1.2E+02 0.0026 26.8 5.2 70 95-181 6-78 (83)
205 PF10212 TTKRSYEDQ: Predicted 30.5 4.4E+02 0.0095 31.1 10.9 105 283-388 389-506 (518)
206 cd07664 BAR_SNX2 The Bin/Amphi 30.3 6.5E+02 0.014 26.3 12.7 185 332-532 20-222 (234)
207 PF10267 Tmemb_cc2: Predicted 29.9 3.6E+02 0.0078 30.6 9.9 53 425-480 258-318 (395)
208 PRK00409 recombination and DNA 29.9 1.8E+02 0.0038 35.2 8.1 81 372-475 516-596 (782)
209 PF05010 TACC: Transforming ac 29.7 6.6E+02 0.014 26.1 16.8 193 371-573 4-200 (207)
210 PF15397 DUF4618: Domain of un 29.5 7.5E+02 0.016 26.7 12.9 44 340-383 80-134 (258)
211 PF02181 FH2: Formin Homology 29.3 7.2E+02 0.016 26.5 13.7 65 107-180 139-203 (370)
212 PF06548 Kinesin-related: Kine 28.5 1E+03 0.022 28.0 15.9 159 408-574 206-422 (488)
213 PF12575 DUF3753: Protein of u 28.4 79 0.0017 28.2 3.7 31 655-686 40-70 (72)
214 TIGR02680 conserved hypothetic 27.5 1.5E+03 0.032 29.5 16.6 164 309-486 223-387 (1353)
215 KOG4673 Transcription factor T 27.1 1.3E+03 0.028 28.7 14.1 80 239-318 587-678 (961)
216 KOG4673 Transcription factor T 27.0 1.3E+03 0.028 28.7 17.7 116 371-537 525-640 (961)
217 PF05278 PEARLI-4: Arabidopsis 26.8 3.5E+02 0.0076 29.4 8.8 55 333-387 206-260 (269)
218 PF12325 TMF_TATA_bd: TATA ele 26.2 4.2E+02 0.0092 25.3 8.4 98 281-385 12-112 (120)
219 PF05335 DUF745: Protein of un 26.2 2.4E+02 0.0051 28.9 7.1 96 425-523 67-165 (188)
220 PF04582 Reo_sigmaC: Reovirus 26.0 84 0.0018 34.7 4.2 116 369-484 35-157 (326)
221 KOG0249 LAR-interacting protei 25.9 7.5E+02 0.016 30.7 11.9 207 342-560 29-249 (916)
222 COG0598 CorA Mg2+ and Co2+ tra 25.6 2.1E+02 0.0046 30.4 7.0 38 98-135 138-175 (322)
223 PF12325 TMF_TATA_bd: TATA ele 25.6 6E+02 0.013 24.3 10.7 92 367-469 21-112 (120)
224 PF00435 Spectrin: Spectrin re 25.5 3.7E+02 0.008 21.8 10.1 66 337-404 4-69 (105)
225 cd00632 Prefoldin_beta Prefold 24.8 3E+02 0.0064 24.8 6.8 74 102-179 22-101 (105)
226 TIGR00634 recN DNA repair prot 24.6 8.1E+02 0.018 28.2 11.8 40 333-372 300-339 (563)
227 TIGR01010 BexC_CtrB_KpsE polys 24.6 8.2E+02 0.018 26.2 11.2 136 285-448 125-265 (362)
228 PRK09841 cryptic autophosphory 24.6 9.4E+02 0.02 28.7 12.6 72 425-496 339-413 (726)
229 PF04111 APG6: Autophagy prote 24.5 4.7E+02 0.01 28.3 9.4 39 369-407 99-137 (314)
230 COG0419 SbcC ATPase involved i 24.4 1.4E+03 0.029 28.0 34.3 122 52-182 118-252 (908)
231 PF03962 Mnd1: Mnd1 family; I 24.4 3.6E+02 0.0077 27.2 8.0 71 498-573 72-142 (188)
232 PF09789 DUF2353: Uncharacteri 24.3 9.7E+02 0.021 26.6 11.7 63 493-555 152-217 (319)
233 PF15168 TRIQK: Triple QxxK/R 24.1 79 0.0017 28.7 3.0 25 660-684 47-71 (79)
234 KOG0977 Nuclear envelope prote 23.9 1.3E+03 0.028 27.6 18.6 121 146-286 47-167 (546)
235 COG3524 KpsE Capsule polysacch 23.8 1.3E+02 0.0029 33.4 5.2 106 236-352 164-269 (372)
236 PF13747 DUF4164: Domain of un 23.6 4.1E+02 0.0089 24.0 7.4 42 374-415 37-78 (89)
237 PF09730 BicD: Microtubule-ass 23.2 8.6E+02 0.019 29.8 11.9 126 338-463 31-180 (717)
238 PF14197 Cep57_CLD_2: Centroso 23.1 3.8E+02 0.0082 23.4 6.8 21 334-354 5-25 (69)
239 PRK09841 cryptic autophosphory 23.1 1.1E+03 0.024 28.1 12.8 22 334-355 274-295 (726)
240 KOG0964 Structural maintenance 22.8 1.7E+03 0.038 28.7 18.6 27 102-128 225-251 (1200)
241 PF09730 BicD: Microtubule-ass 22.6 1.5E+03 0.032 27.9 14.8 108 427-559 354-465 (717)
242 KOG3251 Golgi SNAP receptor co 22.4 40 0.00087 35.2 1.0 31 652-684 178-208 (213)
243 PF08537 NBP1: Fungal Nap bind 22.2 1.8E+02 0.0039 32.3 5.8 60 334-393 175-234 (323)
244 PRK10920 putative uroporphyrin 22.2 1.5E+02 0.0032 33.3 5.3 26 660-685 33-58 (390)
245 PF11570 E2R135: Coiled-coil r 22.2 5.3E+02 0.011 25.7 8.3 58 341-398 77-134 (136)
246 PF13029 DUF3890: Domain of un 22.1 50 0.0011 29.6 1.4 17 654-670 53-69 (74)
247 PRK13729 conjugal transfer pil 22.1 1.7E+02 0.0037 33.9 5.8 46 340-385 75-120 (475)
248 PF09889 DUF2116: Uncharacteri 22.0 1E+02 0.0022 26.4 3.1 22 659-680 33-54 (59)
249 PF10046 BLOC1_2: Biogenesis o 21.8 6E+02 0.013 23.0 8.7 67 324-390 25-94 (99)
250 PF10157 DUF2365: Uncharacteri 21.5 94 0.002 30.7 3.2 52 112-177 97-148 (149)
251 PF04530 Viral_Beta_CD: Viral 21.0 1.1E+02 0.0025 29.6 3.6 37 649-685 32-70 (122)
252 PF04799 Fzo_mitofusin: fzo-li 20.6 2.2E+02 0.0047 29.0 5.6 47 306-356 120-166 (171)
253 COG1730 GIM5 Predicted prefold 20.5 8.4E+02 0.018 24.2 12.0 91 433-523 7-115 (145)
254 PHA02650 hypothetical protein; 20.5 99 0.0022 28.2 2.9 24 662-685 47-70 (81)
255 PF03310 Cauli_DNA-bind: Cauli 20.4 1.5E+02 0.0033 28.7 4.3 17 171-189 85-101 (121)
256 PF07798 DUF1640: Protein of u 20.2 8.4E+02 0.018 24.0 10.4 32 387-419 115-146 (177)
257 PF05546 She9_MDM33: She9 / Md 20.1 1E+03 0.022 25.1 10.5 41 324-366 24-64 (207)
No 1
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.85 E-value=4.8e-08 Score=97.18 Aligned_cols=203 Identities=23% Similarity=0.324 Sum_probs=163.1
Q ss_pred hhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhh-------hHH-------HHhh
Q 005569 308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT-------SQE-------QLNE 373 (690)
Q Consensus 308 kSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea-------~~e-------qisd 373 (690)
..++..+-.+|+.......+ ...|+.+|..|+++||..|...+..|..+..-.+. +.. ....
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~----aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~ 89 (237)
T PF00261_consen 14 EERLEEAEEKLKEAEKRAEK----AEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQS 89 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444444444433333 45689999999999999999998877776644333 221 2345
Q ss_pred hHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHH
Q 005569 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453 (690)
Q Consensus 374 MEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~E 453 (690)
.+.-|+.|-..+..|..+++.|+.||.-....-.-+..+|.-.- +|++.+|.++++++.+|.....+......
T Consensus 90 ~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aE-------eR~e~~E~ki~eLE~el~~~~~~lk~lE~ 162 (237)
T PF00261_consen 90 DEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAE-------ERAEAAESKIKELEEELKSVGNNLKSLEA 162 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 67778888889999999999999998877776666777776544 49999999999999999988888877777
Q ss_pred hhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHH
Q 005569 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (690)
Q Consensus 454 qQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~A 521 (690)
+..-.+...-++|.=|.+|..++..||+||+.||-+|.-|--.+..|..+|...+.+..++..-|+++
T Consensus 163 ~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~ 230 (237)
T PF00261_consen 163 SEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888899999999999999999999999999999999999999999999999999999999875
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=98.32 E-value=0.0041 Score=71.42 Aligned_cols=178 Identities=19% Similarity=0.269 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhcc
Q 005569 339 MKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (690)
Q Consensus 339 L~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~ 418 (690)
+.+|...|++.+.+...++.......+....++..++.-+.++.+.+..+.+..+.++.+...+...--.|..++.-++.
T Consensus 319 l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~ 398 (880)
T PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544444444444444566677777777778888888888888888888888877777777777777665
Q ss_pred CCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccch
Q 005569 419 NNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNF 498 (690)
Q Consensus 419 ~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ 498 (690)
++...+..+.+.+..|+.+....+...+.-+.+.+++.-.+..|+.++..+ ++..|-+ ..+++
T Consensus 399 -------~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l---------~~~~Cp~-C~r~~ 461 (880)
T PRK02224 399 -------RFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALL---------EAGKCPE-CGQPV 461 (880)
T ss_pred -------HHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcccCCC-CCCcC
Confidence 333333444555555555555555555666666666666666666665422 2356744 22222
Q ss_pred ----------hhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhh
Q 005569 499 ----------ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNH 534 (690)
Q Consensus 499 ----------ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~ 534 (690)
++...+.=++..++.|+..+..++. +...++++-.
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~-~~e~l~~~~~ 506 (880)
T PRK02224 462 EGSPHVETIEEDRERVEELEAELEDLEEEVEEVEE-RLERAEDLVE 506 (880)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4455555666777777887777776 5555555533
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.12 E-value=0.004 Score=78.22 Aligned_cols=328 Identities=26% Similarity=0.329 Sum_probs=213.0
Q ss_pred HHHHHHHhhhhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHHHHhhhhccchhHHHhhhcHHhhcccceEEEe
Q 005569 217 LRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFN 296 (690)
Q Consensus 217 LrMLEkSlA~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL~grlqi~QF~ 296 (690)
|+=..|.+++|+ .|+..-..++.-.+|-.|...-.+|....++=-..-|++-+-+.-- |+-+. + |.+
T Consensus 1489 l~renk~l~~ei------~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE--~~~lr--~---~~~ 1555 (1930)
T KOG0161|consen 1489 LRRENKNLSQEI------EDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEE--DKKLR--L---QLE 1555 (1930)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHH--H---HHH
Confidence 444445555443 3444445555555666666666666666666666666665533322 22222 1 112
Q ss_pred ecccccch--hHHhhhHHHHHHHHhhhhHHHHHhhhc------CchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhH
Q 005569 297 LNGSLQRE--SELKSKLGDFIEQLKAKDMVLQKLEST------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ 368 (690)
Q Consensus 297 Lngs~~RE--~eLkSKLe~~~~ql~~k~~~l~Kle~~------~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~ 368 (690)
.+-++.| ..|-.|-+.+-.-=..--..++.+.+. ..+|+..+.. -||-++.+.++++.+|.......+
T Consensus 1556 -~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KK---kle~di~elE~~ld~ank~~~d~~ 1631 (1930)
T KOG0161|consen 1556 -LQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKK---KLEGDINELEIQLDHANKANEDAQ 1631 (1930)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh---hhhcchHHHHHHHHHHHHhhHHHH
Confidence 2223333 333333333222111112222222222 4466666654 589999999999999987766654
Q ss_pred HHH--------------hhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccch--------------hhhHHHhhhhccCC
Q 005569 369 EQL--------------NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN--------------LELSEEINFLKGNN 420 (690)
Q Consensus 369 eqi--------------sdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN--------------~ELneEL~fLk~~~ 420 (690)
.++ .+--..-+++++.+..||-|+..+++-|..|.... .|+.+.++.+.+++
T Consensus 1632 K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~ 1711 (1930)
T KOG0161|consen 1632 KQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQN 1711 (1930)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 432 24444557889999999999999999998887653 57889999999875
Q ss_pred CCCcchhhhHHHHHhhHHHHHHHhHhhhhhhH-------------------Hhhhh--HHHHHHhHHHHHHHHhhhhhhh
Q 005569 421 DSNTKKVGILENQLRDLEIQLQQAKVSSEASQ-------------------EQQSM--LYSAIWDMETLIEDLKSKVSKA 479 (690)
Q Consensus 421 ~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~-------------------EqQ~M--Lysti~DME~lIeDLKsKvsKA 479 (690)
...+..-.-||..+--+...|+..---..++. ||+.- |++.=--+|.-++||+.|.-.|
T Consensus 1712 s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~ 1791 (1930)
T KOG0161|consen 1712 SSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEA 1791 (1930)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566665554444443333233333 33322 4445556778888888888888
Q ss_pred cccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHH---HHHHHH
Q 005569 480 ESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQR---ELIQKQ 556 (690)
Q Consensus 480 EsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA~ER---ERL~~Q 556 (690)
|+.|-.-= ..-+.-|+.|+-+||++|+.+...+..+-|-....=+.|++|-+|+.-+| +|++.+
T Consensus 1792 E~~a~~~~-------------k~~i~~Learir~LE~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~ 1858 (1930)
T KOG0161|consen 1792 EQAALKGG-------------KKQIAKLEARIRELESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDL 1858 (1930)
T ss_pred HHhhhhcc-------------HHHHHHHHHHHHHHHHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 88764321 23467899999999999999999999999999999999999999999998 789999
Q ss_pred hhhhhhhhhHHHHHHhhc
Q 005569 557 VYSLTSENKLLVEKLQYS 574 (690)
Q Consensus 557 i~sL~keNkiLv~K~k~~ 574 (690)
+.-|+.+++.+-..+-+.
T Consensus 1859 ~dkl~~k~~~~krQleea 1876 (1930)
T KOG0161|consen 1859 VDKLQAKIKQYKRQLEEA 1876 (1930)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 999999999997777654
No 4
>PRK02224 chromosome segregation protein; Provisional
Probab=98.12 E-value=0.006 Score=70.16 Aligned_cols=278 Identities=20% Similarity=0.290 Sum_probs=137.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHHHHhhhhccchhHHHhhhcHHhhcccceEE
Q 005569 215 HILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQ 294 (690)
Q Consensus 215 niLrMLEkSlA~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL~grlqi~Q 294 (690)
..+.=|++.+. +++..+.+..+-.++++-+++..+...-.+++..+.+=.+.-+++.. -+++-.+|+-.|
T Consensus 349 ~~~~~le~~~~---~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~-------~~~~e~~l~~l~ 418 (880)
T PRK02224 349 EDADDLEERAE---ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVD-------LGNAEDFLEELR 418 (880)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-------hhhhHHHHHHHH
Confidence 33444444442 35566666666667788888888888888888777765555544421 122222223223
Q ss_pred EeecccccchhHHhhhHHHHHHHHhhhhHHHHH---------hhhcCchhhh-hHHHHHHHHHHHHHHhhhhhhhhhhch
Q 005569 295 FNLNGSLQRESELKSKLGDFIEQLKAKDMVLQK---------LESTKNSEVL-TMKEKVKSLEEQLKESEIRLQNANACF 364 (690)
Q Consensus 295 F~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~K---------le~~~~sE~~-tL~eKV~sLEkqLrESe~QL~~a~AS~ 364 (690)
=.+.-...+.+++++.+...-..+..-...+.. +......++. .+..++..++.++.+.+.++..++...
T Consensus 419 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 498 (880)
T PRK02224 419 EERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL 498 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333344444444333222222211111111 0000111333 356666666666666666666555443
Q ss_pred hhh------HHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHh-------hhhccCCCCCcchhhhHH
Q 005569 365 QTS------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI-------NFLKGNNDSNTKKVGILE 431 (690)
Q Consensus 365 ea~------~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL-------~fLk~~~~~~s~kv~~LE 431 (690)
+.. +.++.++....+++.+.+.....+.+.++.++..|.+.=-+|..++ .-+++......+++..++
T Consensus 499 e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (880)
T PRK02224 499 ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 321 2234444444444444444444444444444444444444444444 223332211123555566
Q ss_pred HHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHH
Q 005569 432 NQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKI 511 (690)
Q Consensus 432 kqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~ 511 (690)
+++.+...++.... . =.=++..|.+.+.-+.+|+.++.+.+.+-+ ++.++|.=+|.|+
T Consensus 579 ~~~~~l~~~~~~le-~-------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~l~~~r~~i 636 (880)
T PRK02224 579 SKLAELKERIESLE-R-------IRTLLAAIADAEDEIERLREKREALAELND--------------ERRERLAEKRERK 636 (880)
T ss_pred HHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 66655544444433 1 111334455666777777777766655522 8888888888888
Q ss_pred HHHHHhHhHHhHh
Q 005569 512 KILESSLNRANIE 524 (690)
Q Consensus 512 e~LE~sL~~An~~ 524 (690)
..||..+..+...
T Consensus 637 ~~l~~~~~~~~~e 649 (880)
T PRK02224 637 RELEAEFDEARIE 649 (880)
T ss_pred HHHHHHhCHHHHH
Confidence 8887665554433
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=0.014 Score=71.00 Aligned_cols=229 Identities=13% Similarity=0.167 Sum_probs=147.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhh---HHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHh
Q 005569 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEM---DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (690)
Q Consensus 337 ~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdM---EnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL 413 (690)
-.++..+..++.+++.....+.......+..+.+|+.+ .+-+.+.+.++.++-.+-...|.....|.+.+.++..++
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~ 904 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREI 904 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666555555555555555555566666 555666677777777788888888888888888888888
Q ss_pred hhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhccc-----cccccc
Q 005569 414 NFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK-----TESVEE 488 (690)
Q Consensus 414 ~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsr-----aesaE~ 488 (690)
.-++. +.+-|...+.....++...+...++..++...-+..+...-+-|..|-..+..-..+ .+..+.
T Consensus 905 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~ 977 (1311)
T TIGR00606 905 KDAKE-------QDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKET 977 (1311)
T ss_pred HHHHH-------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88777 566666666666666666666666655555544444444444444443333322111 333334
Q ss_pred ceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhh---------HHHHHHHHHHHH--------HHHH
Q 005569 489 QCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHR---------TKLMMEMVMQLA--------TQRE 551 (690)
Q Consensus 489 kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~r---------tK~i~dlV~qLA--------~ERE 551 (690)
++-.+..+=-++..|+.=++..+..+...++.....|-.-...|..+ ..-|..|..++| .|+.
T Consensus 978 el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~ 1057 (1311)
T TIGR00606 978 ELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQ 1057 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 43333444567888888888889988888888888887777767666 333445554443 6888
Q ss_pred HHHHHhhhhhhhhhHHHHHHh
Q 005569 552 LIQKQVYSLTSENKLLVEKLQ 572 (690)
Q Consensus 552 RL~~Qi~sL~keNkiLv~K~k 572 (690)
+|..++..|...+-.+...++
T Consensus 1058 ~l~~~~~~l~~~~a~l~g~~k 1078 (1311)
T TIGR00606 1058 KLEENIDLIKRNHVLALGRQK 1078 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887776654444
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.94 E-value=0.02 Score=72.31 Aligned_cols=445 Identities=19% Similarity=0.216 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhhccc----ceeccccchhhHHHH----HHHhhhhhhhhHhhHHHHH
Q 005569 90 TSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVH----HKISSCKHLREVFTI----MEKMEKKLHDCEGSLKESQ 161 (690)
Q Consensus 90 ~sveKaleFDlL~gILDSEVrELe~~~~tlq~~I~~~~----~ki~s~~hl~e~f~~----m~~~~~KL~d~~~sLkQ~q 161 (690)
..-+|+-.+.-++.=|++.+.+++.-+.-=+.-..+.. +....+....+.-.. ...++..|...+..|-|++
T Consensus 1003 ~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~ 1082 (1930)
T KOG0161|consen 1003 AEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQ 1082 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777788887777766544333222222 001111000000000 0122333333444444444
Q ss_pred HHHHHHHHhhHhhhhhhhhcccCCCccchhhcccCCcccccccccccchHHHhHHHHHHHHHhhhhhhhhhhhhHhhhhH
Q 005569 162 EHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNE 241 (690)
Q Consensus 162 e~i~eIk~Qsa~Fqr~~~~~~~~~~~~~~~~~e~g~~~n~~~~~~mqt~eqqRniLrMLEkSlA~ElDLEKkL~esr~~e 241 (690)
..+-+-....++|++.+..+ ..+..-+...||..-+.---+||..+|.....
T Consensus 1083 ~k~e~e~~~~~~l~k~i~eL----------------------------~~~i~el~e~le~er~~r~K~ek~r~dL~~el 1134 (1930)
T KOG0161|consen 1083 SKLEDEQAEVAQLQKQIKEL----------------------------EARIKELEEELEAERASRAKAERQRRDLSEEL 1134 (1930)
T ss_pred HHhhHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444221 24456677888888888888999999999988
Q ss_pred HHhhhhhcchhhhHHHHHhhHHHHHHhhhhccchhHHHhhhcHHhhcccceEEEeecccccchhHHhhhHHHHHHHHhhh
Q 005569 242 EQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK 321 (690)
Q Consensus 242 EeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL~grlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k 321 (690)
++|+-.|--..+...-..|...--|..+-...=.-|-=.=-....+..+. ++=++--.-|...++++.-.
T Consensus 1135 e~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr----------~~~~~~~~el~~qle~l~~~ 1204 (1930)
T KOG0161|consen 1135 EELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELR----------KKHADSLAELQEQLEQLQKD 1204 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 88888875443334444444333333332221111000000001111111 22233334455555666655
Q ss_pred hHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHH-------HHHHHhhhhhhhhhhh
Q 005569 322 DMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFI-------ESLKESLYGAESRAES 394 (690)
Q Consensus 322 ~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvI-------edLKekv~kAESRAe~ 394 (690)
..-+.|-.+....|+.++...|..+..--.+.+.-.....++.-..+..++++...+ ..+...+..-.++-+.
T Consensus 1205 k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee 1284 (1930)
T KOG0161|consen 1205 KAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEE 1284 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHH
Confidence 566666655544555555555554433322222222111222222333344444443 3345555666777888
Q ss_pred HHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHH-------------------HHhHhhhhhhHHh-
Q 005569 395 AEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL-------------------QQAKVSSEASQEQ- 454 (690)
Q Consensus 395 AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QL-------------------qhAkAS~eAs~Eq- 454 (690)
+|.+|..++..+..+.-+|..+|++-+..+.+-..|+.+++-+...+ ++.++.+++.+-+
T Consensus 1285 ~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~ 1364 (1930)
T KOG0161|consen 1285 AEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKK 1364 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888876555666666776666554333 3333333333322
Q ss_pred --hhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhh
Q 005569 455 --QSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV 532 (690)
Q Consensus 455 --Q~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDI 532 (690)
+.-+-...-++|-.+.-|-.++..|+.+.+-+.-+|.-|=.+=..|.-|+.-++.-++..- +...+-+.|...--.+
T Consensus 1365 k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~-~~~~~le~k~k~f~k~ 1443 (1930)
T KOG0161|consen 1365 KFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSR-AAVAALEKKQKRFEKL 1443 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 2233344566777777777788888888888888887775554444444433332222111 0112222232222222
Q ss_pred hhhHHHHHH------------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 005569 533 NHRTKLMME------------------MVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (690)
Q Consensus 533 g~rtK~i~d------------------lV~qLA~ERERL~~Qi~sL~keNkiLv~K~k~ 573 (690)
....|-..+ -+..|...=+-+..|+-.+.++||.|...+.+
T Consensus 1444 l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~d 1502 (1930)
T KOG0161|consen 1444 LAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIED 1502 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 12222333333445688888889888776664
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.91 E-value=0.00018 Score=71.94 Aligned_cols=189 Identities=24% Similarity=0.343 Sum_probs=140.0
Q ss_pred HhhcccceEEEeecccccchhHHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhch
Q 005569 285 EMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACF 364 (690)
Q Consensus 285 eL~grlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ 364 (690)
.|-.|++.+.=.|...-.|=.....||...-..+...+..+..|++. ..+.-+|+..||.||++.......+..-
T Consensus 40 ~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r----~~~~eeri~~lE~~l~ea~~~~ee~e~k- 114 (237)
T PF00261_consen 40 SLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENR----EQSDEERIEELEQQLKEAKRRAEEAERK- 114 (237)
T ss_dssp HHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH----HHHHHHHHHHCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34455555555555555555567778877777777777777777763 2244567777777776666655555444
Q ss_pred hhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHh
Q 005569 365 QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (690)
Q Consensus 365 ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhA 444 (690)
+.+...=+.-+-..+.+||.|++.+|.||..|-+.--.+..-|..|--+....+.|...+|.+++.+..+|..|
T Consensus 115 ------~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkea 188 (237)
T PF00261_consen 115 ------YEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEA 188 (237)
T ss_dssp ------HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444445556677889999999999999999988888888888877666566888899999999999999999
Q ss_pred HhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhccccc
Q 005569 445 KVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTE 484 (690)
Q Consensus 445 kAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsrae 484 (690)
..-++...-.=..|=..|-++|.=|..-|.++.+...-.|
T Consensus 189 E~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 189 ENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888788888999999999999998887765444
No 8
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.83 E-value=0.013 Score=67.98 Aligned_cols=52 Identities=17% Similarity=0.258 Sum_probs=27.0
Q ss_pred chHHHhHHHHHH---HHHhhhhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHh
Q 005569 209 NADQQRHILRML---EKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEE 260 (690)
Q Consensus 209 t~eqqRniLrML---EkSlA~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE 260 (690)
.+..+|.+|..+ .....+-.+..++|.....+.++|+..+...+...-.++.
T Consensus 151 ~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~ 205 (1164)
T TIGR02169 151 SPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRR 205 (1164)
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788777654 2222333344455555555555555555554444444443
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.80 E-value=0.0031 Score=75.70 Aligned_cols=261 Identities=18% Similarity=0.248 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccC
Q 005569 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (690)
Q Consensus 340 ~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~ 419 (690)
.+....|+..+.++....+......+..+.++.+.+.-+..+...+..-+.|.+.++.....+.+...++.+++..|+..
T Consensus 771 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~ 850 (1163)
T COG1196 771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE 850 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444333333333333445556666666666666666666777777777777777777777777777663
Q ss_pred CCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeec----c
Q 005569 420 NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLS----E 495 (690)
Q Consensus 420 ~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLS----e 495 (690)
-.....+...+..++.+...++..+.........+...|-..+...++=+..++.++.+++.++...+.+|-.+- .
T Consensus 851 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 930 (1163)
T COG1196 851 LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPE 930 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233444444444444444555555556666777777777777788888888888888888888777774433 3
Q ss_pred cchhhhhhhh-----hhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 005569 496 DNFELKNKQS-----FMRDKIKILESSLNRANIEKAASAKEVNHRTK---LMMEMVMQLATQRELIQKQVYSLTSENKLL 567 (690)
Q Consensus 496 tN~ELneELs-----FLR~R~e~LE~sL~~An~~K~stAKDIg~rtK---~i~dlV~qLA~ERERL~~Qi~sL~keNkiL 567 (690)
.+.++.++.. .++.++..|+..+..=..+.+....+..-..+ -+..-...|--.|+.|+..|..+-++=+-.
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~ 1010 (1163)
T COG1196 931 LEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010 (1163)
T ss_pred HHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 67888888888854444444555555544444 444455566778888888888875443322
Q ss_pred HHHHhhcCCCCCccccccC-CCCCcceeccCCCC
Q 005569 568 VEKLQYSGKSSSATMYNAG-DTDDKELLINPTNN 600 (690)
Q Consensus 568 v~K~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 600 (690)
-...=..++..=-.+|..- .|+.+++.+..+++
T Consensus 1011 f~~~f~~In~~F~~if~~L~~GG~a~L~l~~~dd 1044 (1163)
T COG1196 1011 FKETFDKINENFSEIFKELFGGGTAELELTEPDD 1044 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCeeEEEeCCCCc
Confidence 1111111111111233333 34577777775443
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.77 E-value=0.0091 Score=69.17 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=29.4
Q ss_pred hhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhccccc
Q 005569 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTE 484 (690)
Q Consensus 426 kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsrae 484 (690)
++..++.++.+.+.++.......+..+.+..-+...+.+++.-|+++..+..+.+.+..
T Consensus 876 ~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 934 (1164)
T TIGR02169 876 ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELS 934 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444555555555555555555554444443
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.61 E-value=0.0049 Score=70.80 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=57.6
Q ss_pred hhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccce----eeecccchh---
Q 005569 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQC----IVLSEDNFE--- 499 (690)
Q Consensus 427 v~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kC----ilLSetN~E--- 499 (690)
...++..+.+...++..+........++..-+...+..++.-+.++..+...++.+.......| -+..+.-.+
T Consensus 882 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~ 961 (1179)
T TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN 961 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHhhcc
Confidence 3344444444444444444444444444444555555555555555554444444333211111 000011111
Q ss_pred -hhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHH
Q 005569 500 -LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMV 543 (690)
Q Consensus 500 -LneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV 543 (690)
+..++.=|+.+++.|...+.+-++.++.+.+...--..=..||.
T Consensus 962 ~~~~~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL~ 1006 (1179)
T TIGR02168 962 KIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLT 1006 (1179)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888777777766555554444344444443
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.49 E-value=0.027 Score=64.94 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHhhh
Q 005569 375 DNFIESLKESLYGAESRAESAEEKVT 400 (690)
Q Consensus 375 EnvIedLKekv~kAESRAe~AE~kc~ 400 (690)
+.-+..++..+...+.+.+.++.++.
T Consensus 753 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 778 (1179)
T TIGR02168 753 SKELTELEAEIEELEERLEEAEEELA 778 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443333
No 13
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.41 E-value=0.42 Score=58.67 Aligned_cols=118 Identities=11% Similarity=0.117 Sum_probs=66.8
Q ss_pred hheeeeccccccchhhhhHHHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhh
Q 005569 45 VLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIV 124 (690)
Q Consensus 45 vLtrveldlA~~SEKL~NL~~L~M~l~~~~~d~E~~~~~~~~i~~~sveKaleFDlL~gILDSEVrELe~~~~tlq~~I~ 124 (690)
-+.++..+..+.-+.+..+..++=+++++-+ +.++.-++ ++...+..+. +-+.+-+...-++++.+...++.++.
T Consensus 348 e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~~~~~~ 422 (1311)
T TIGR00606 348 EQGRLQLQADRHQEHIRARDSLIQSLATRLE-LDGFERGP--FSERQIKNFH--TLVIERQEDEAKTAAQLCADLQSKER 422 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cCCCCCcc--cchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777778888888888888755 44433221 2222222222 23445555555566666666666655
Q ss_pred cccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhh
Q 005569 125 NVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSY 180 (690)
Q Consensus 125 ~~~~ki~s~~hl~e~f~~m~~~~~KL~d~~~sLkQ~qe~i~eIk~Qsa~Fqr~~~~ 180 (690)
.+...+ ..+..++...++.+..-.+++..........++-+..
T Consensus 423 ~~q~~L-------------~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~ 465 (1311)
T TIGR00606 423 LKQEQA-------------DEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQ 465 (1311)
T ss_pred HHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 554433 2335555555556666666666666666666666644
No 14
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.37 E-value=0.029 Score=65.83 Aligned_cols=243 Identities=25% Similarity=0.334 Sum_probs=166.7
Q ss_pred HhhcccceEEEeecccccchhH-------HhhhHHHHHHHHhhhhHHHHHhhhc-----------------CchhhhhHH
Q 005569 285 EMLGRFQIVQFNLNGSLQRESE-------LKSKLGDFIEQLKAKDMVLQKLEST-----------------KNSEVLTMK 340 (690)
Q Consensus 285 eL~grlqi~QF~Lngs~~RE~e-------LkSKLe~~~~ql~~k~~~l~Kle~~-----------------~~sE~~tL~ 340 (690)
++-.++...|-.|.+.-++-.- |+.+|+..-.+++.+...+.++... ...++..|+
T Consensus 319 d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 319 DMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666655555443 5555666666666665555555522 336888999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhchhh----h---------HHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchh
Q 005569 341 EKVKSLEEQLKESEIRLQNANACFQT----S---------QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (690)
Q Consensus 341 eKV~sLEkqLrESe~QL~~a~AS~ea----~---------~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ 407 (690)
.|+..||.+|++-+.|+...+...-+ + .+-+.+-+.+|+.|.+.-.+++ ....+..-
T Consensus 399 ~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e----------~e~~Eele 468 (775)
T PF10174_consen 399 KKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAE----------KERQEELE 468 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 99999999999999998877754332 1 1226688888888876544433 22223334
Q ss_pred hhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhH---hhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhccccc
Q 005569 408 ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK---VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTE 484 (690)
Q Consensus 408 ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAk---AS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsrae 484 (690)
-+..|+.-|++ ++.+|++.|.|-++||.-++ .+.-+++++| +|=|...+..++-.+.|+.|.++..+
T Consensus 469 ~~~~e~~~lk~-------~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~---~s~i~~l~I~lEk~rek~~kl~~ql~ 538 (775)
T PF10174_consen 469 TYQKELKELKA-------KLESLQKELSEKELQLEDAKEEASKLASSQEKK---DSEIERLEIELEKKREKHEKLEKQLE 538 (775)
T ss_pred HHHHHHHHHHH-------HHHHHhhhhHHHHHHHHHhhhHHHHHhhccchh---hhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 56677777777 88999999999999988765 4555677777 67788888888888888888887776
Q ss_pred ccc------cceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHH
Q 005569 485 SVE------EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA 547 (690)
Q Consensus 485 saE------~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA 547 (690)
.+. +.|-.|--.+....++.+=-|+=|+.|=..|+.|+..|-+.=+.||-=.|-+.+.-++++
T Consensus 539 k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek~~~~~~ 607 (775)
T PF10174_consen 539 KLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELEKAQMHLA 607 (775)
T ss_pred HHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchh
Confidence 611 123334444455566666777888999999999999999998888876666555444444
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.31 E-value=0.013 Score=63.59 Aligned_cols=102 Identities=11% Similarity=0.177 Sum_probs=57.1
Q ss_pred chhhhHHHHHhhHHHHHHHhHhhhh---hhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhh
Q 005569 425 KKVGILENQLRDLEIQLQQAKVSSE---ASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (690)
Q Consensus 425 ~kv~~LEkqLrEsd~QLqhAkAS~e---As~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELn 501 (690)
.++..|+.+..+++.|+.....+.. ..+++-.-+...+.+.+.-|...++.+.....+....+..=.=|...+.+++
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~ 378 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA 378 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH
Confidence 3666666666666666665555555 4444445555566666666555555554433333333333333333377788
Q ss_pred hhhhhhhhHHHHHHHhHhHHhHhhh
Q 005569 502 NKQSFMRDKIKILESSLNRANIEKA 526 (690)
Q Consensus 502 eELsFLR~R~e~LE~sL~~An~~K~ 526 (690)
++|.-+..+++.+....++-...+.
T Consensus 379 ~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 379 EELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777777666665555443
No 16
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.01 E-value=0.15 Score=62.11 Aligned_cols=160 Identities=23% Similarity=0.236 Sum_probs=124.0
Q ss_pred hccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcc
Q 005569 402 LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAES 481 (690)
Q Consensus 402 LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEs 481 (690)
+-..|-+|.+.+..|+..+..-+.+...+|+.|.-...|++.|+.-..-++..=.+|.+...+--.=.++||+++..+.+
T Consensus 456 ~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~ 535 (1293)
T KOG0996|consen 456 LEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSE 535 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999998866667888999999999999999999999999999899988887777777788888877644
Q ss_pred cccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH---HHhh
Q 005569 482 KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQ---KQVY 558 (690)
Q Consensus 482 raesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA~ERERL~---~Qi~ 558 (690)
. +.|.+ ..+..++..|..-+...-.--|++..-.+....|.+||..=|.|+. .+++
T Consensus 536 ~--------------~~e~~-------~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~ 594 (1293)
T KOG0996|consen 536 S--------------LKEKK-------TELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLS 594 (1293)
T ss_pred H--------------HHHHH-------HHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33333 3444555555555555555668888888999999999999888875 4577
Q ss_pred hhhhhhhHH--HHHHhhcCCCCCccc
Q 005569 559 SLTSENKLL--VEKLQYSGKSSSATM 582 (690)
Q Consensus 559 sL~keNkiL--v~K~k~~~~~~~~~~ 582 (690)
+-.+.|++| ..++|++++.+|+-+
T Consensus 595 ~~~s~~kVl~al~r~kesG~i~Gf~G 620 (1293)
T KOG0996|consen 595 SSRSRNKVLDALMRLKESGRIPGFYG 620 (1293)
T ss_pred hhhhhhHHHHHHHHHHHcCCCCcccc
Confidence 888999999 788999876655433
No 17
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.97 E-value=0.14 Score=61.14 Aligned_cols=266 Identities=26% Similarity=0.334 Sum_probs=178.4
Q ss_pred EeecccccchhHHhhhHHHHHHHHhhhh----------HHHHHhhhc--Cchhhhh-HHHHHHHHHHHHHHhhhhhhhhh
Q 005569 295 FNLNGSLQRESELKSKLGDFIEQLKAKD----------MVLQKLEST--KNSEVLT-MKEKVKSLEEQLKESEIRLQNAN 361 (690)
Q Consensus 295 F~Lngs~~RE~eLkSKLe~~~~ql~~k~----------~~l~Kle~~--~~sE~~t-L~eKV~sLEkqLrESe~QL~~a~ 361 (690)
..|.-+.+.|.+||..+.+-.++|++.. .-++|+.-. .--||.+ +..+..+|+++|.++......|.
T Consensus 217 v~l~saskte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaq 296 (1243)
T KOG0971|consen 217 VPLPSASKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQ 296 (1243)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667888889999998888887432 233443321 2245543 56888999999999999998888
Q ss_pred hchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccC----C-CC---CcchhhhHHHH
Q 005569 362 ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN----N-DS---NTKKVGILENQ 433 (690)
Q Consensus 362 AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~----~-~~---~s~kv~~LEkq 433 (690)
+-.+.+...++|.-.-|+=+--.---||-||++----.--|+|-|-||.-+|..||.- | +. +|--.--||-|
T Consensus 297 e~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqq 376 (1243)
T KOG0971|consen 297 EAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQ 376 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHH
Confidence 8888888888888888887777777899999999999999999999999999999842 1 10 11112223322
Q ss_pred ---HhhHHHHHHHhHhhhhhhHHhhh--------------------hHHHHHHhHHHHHHHHhhhhhhhcccccccccce
Q 005569 434 ---LRDLEIQLQQAKVSSEASQEQQS--------------------MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQC 490 (690)
Q Consensus 434 ---LrEsd~QLqhAkAS~eAs~EqQ~--------------------MLysti~DME~lIeDLKsKvsKAEsraesaE~kC 490 (690)
||+.=+.|--. |+.+-++-|. .|..-+.-||--|.|||..|--| -.||+--
T Consensus 377 N~rLKdalVrLRDl--sA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA----lGAE~MV 450 (1243)
T KOG0971|consen 377 NARLKDALVRLRDL--SASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA----LGAEEMV 450 (1243)
T ss_pred HHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcHHHHH
Confidence 33322222211 2233333332 34455666777777777777654 4678888
Q ss_pred eeecccchhhhhhhhhhhhHHHHHHHh---------------------HhHH-------hH---hhhhhhhhhhhhHHHH
Q 005569 491 IVLSEDNFELKNKQSFMRDKIKILESS---------------------LNRA-------NI---EKAASAKEVNHRTKLM 539 (690)
Q Consensus 491 ilLSetN~ELneELsFLR~R~e~LE~s---------------------L~~A-------n~---~K~stAKDIg~rtK~i 539 (690)
.-|++-|++|.+-+.-|+.-|..||.- |+.| +. .-+.|+-|-....+-|
T Consensus 451 ~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~Kf 530 (1243)
T KOG0971|consen 451 EQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKF 530 (1243)
T ss_pred HHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 899999999999999999888877752 1222 11 1234555666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 005569 540 MEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (690)
Q Consensus 540 ~dlV~qLA~ERERL~~Qi~sL~keNkiLv~K~k~ 573 (690)
.+||.+| +.|+..++..|--++....+
T Consensus 531 Relva~L-------qdqlqe~~dq~~Sseees~q 557 (1243)
T KOG0971|consen 531 RELVAHL-------QDQLQELTDQQESSEEESQQ 557 (1243)
T ss_pred HHHHHHH-------HHHHHHHHhhhhhhHHHhcC
Confidence 7777765 56777777777666766665
No 18
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.87 E-value=1.2 Score=50.35 Aligned_cols=162 Identities=23% Similarity=0.311 Sum_probs=110.4
Q ss_pred hhHHHhhhcHHhhcccceEEEeecccccchhHHhhhHHHHH-HHHhhhhHHHHHhhhc--------CchhhhhHHHHHHH
Q 005569 275 SAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFI-EQLKAKDMVLQKLEST--------KNSEVLTMKEKVKS 345 (690)
Q Consensus 275 AsEvL~GiSKeL~grlqi~QF~Lngs~~RE~eLkSKLe~~~-~ql~~k~~~l~Kle~~--------~~sE~~tL~eKV~s 345 (690)
|+++|..+..++-. |...+.+=-.|=.+++.-+ .||.......++|... .++++..+++++..
T Consensus 196 A~e~l~~l~~~~~~--------l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~ 267 (569)
T PRK04778 196 AREILDQLEEELAA--------LEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDE 267 (569)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHH
Confidence 45666666655421 1122222223344444434 5666555566666533 23455555555555
Q ss_pred HHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccC---CCC
Q 005569 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN---NDS 422 (690)
Q Consensus 346 LEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~---~~~ 422 (690)
....|. ++.|..|.+..+..+++|.+|-.+++.=..+-..++............+.+.|-+|..|+..|+-+ ...
T Consensus 268 ~~~~l~--~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~ 345 (569)
T PRK04778 268 NLALLE--ELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNES 345 (569)
T ss_pred HHHHHH--hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch
Confidence 444444 345778888888899999999999999999999999999999999999999999999999999876 112
Q ss_pred CcchhhhHHHHHhhHHHHHHHhHh
Q 005569 423 NTKKVGILENQLRDLEIQLQQAKV 446 (690)
Q Consensus 423 ~s~kv~~LEkqLrEsd~QLqhAkA 446 (690)
-..++..++++|.+...++.....
T Consensus 346 e~~~~~~lekeL~~Le~~~~~~~~ 369 (569)
T PRK04778 346 ELESVRQLEKQLESLEKQYDEITE 369 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 256788999999888777765443
No 19
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.84 E-value=0.029 Score=56.84 Aligned_cols=136 Identities=22% Similarity=0.301 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhc
Q 005569 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (690)
Q Consensus 338 tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk 417 (690)
.+..+...+|....-++.||.-|+..++...-++-..-....=+-..+-.||-||+.+|++|.+|.+.=--+.-.|.+|.
T Consensus 50 v~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~ 129 (205)
T KOG1003|consen 50 VIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLS 129 (205)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 35556666666666666666666666655544444444444444567788999999999999998876666666666666
Q ss_pred cCCCCCcchhhhHHHH-------HhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhc
Q 005569 418 GNNDSNTKKVGILENQ-------LRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (690)
Q Consensus 418 ~~~~~~s~kv~~LEkq-------LrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAE 480 (690)
-....-+.|.+..+.+ |+|.++.-+||--||.+ |--++-|||.-....|.||-.+-
T Consensus 130 ~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVak-------Leke~DdlE~kl~~~k~ky~~~~ 192 (205)
T KOG1003|consen 130 AKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAK-------LEKERDDLEEKLEEAKEKYEEAK 192 (205)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH-------HcccHHHHHHhhHHHHHHHHHHH
Confidence 5443334444444444 44444444555444433 44467777777777777765543
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.75 E-value=0.22 Score=60.28 Aligned_cols=180 Identities=21% Similarity=0.266 Sum_probs=94.4
Q ss_pred hHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHh
Q 005569 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (690)
Q Consensus 367 ~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkA 446 (690)
.+.++.+.+.-+..++..+...+.+.++...+-..+...=.+++.+++.++. +...|+++|++....+...+.
T Consensus 833 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~-------~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 833 LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEE-------EKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666666666665555555555666666666665 556666666666666555555
Q ss_pred hhhhhHHhhhhHHHHHHhHHHHHH----HHhhhhh-----hhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHh
Q 005569 447 SSEASQEQQSMLYSAIWDMETLIE----DLKSKVS-----KAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 517 (690)
Q Consensus 447 S~eAs~EqQ~MLysti~DME~lIe----DLKsKvs-----KAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~s 517 (690)
..+--.+..+.|..-++-.+..+. .+..-+. .++.+....+..+--|-.-|+.-=+|..=.+.|.+.|..-
T Consensus 906 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~ 985 (1163)
T COG1196 906 EIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQ 985 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHH
Confidence 555444444443333322222221 1111111 4566666666667778888976656666566666665555
Q ss_pred HhHHhHhhhhhhhhhh----hhHHHHHHHHHHHHHHHHHH
Q 005569 518 LNRANIEKAASAKEVN----HRTKLMMEMVMQLATQRELI 553 (690)
Q Consensus 518 L~~An~~K~stAKDIg----~rtK~i~dlV~qLA~ERERL 553 (690)
+....+.|..--.=|. .+...|++.+-.....-.++
T Consensus 986 ~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~i 1025 (1163)
T COG1196 986 REDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEI 1025 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444432222222 23344555554444444333
No 21
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.49 E-value=0.34 Score=49.54 Aligned_cols=68 Identities=25% Similarity=0.207 Sum_probs=35.4
Q ss_pred hhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH-HHHHh
Q 005569 498 FELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL-VEKLQ 572 (690)
Q Consensus 498 ~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~sL~keNkiL-v~K~k 572 (690)
-.|..+|.-|+++...||..++..+..-- .+.......|.++=.+|+-=|..+..| ..+...| -.|+.
T Consensus 226 ~~l~~el~~l~~~~~~Le~~l~~le~~~~---~~~~~~~~~i~~le~el~~l~~~~~~~----~~ey~~Ll~~K~~ 294 (312)
T PF00038_consen 226 QSLQAELESLRAKNASLERQLRELEQRLD---EEREEYQAEIAELEEELAELREEMARQ----LREYQELLDVKLA 294 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hHhhhhhhccccchhhhhhhHHHHHHHHH---HHHHHHHHhhhccchhHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 45666677777777777777766554322 223333334444444444444444444 4444444 44554
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.33 E-value=0.27 Score=56.07 Aligned_cols=187 Identities=21% Similarity=0.250 Sum_probs=82.4
Q ss_pred chhHHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHh-------hhH
Q 005569 303 RESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN-------EMD 375 (690)
Q Consensus 303 RE~eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqis-------dME 375 (690)
+...|..+|+.+.+..... .+... .|.+.+..|.+++.+.+.+|.+.+...+..+.+.. .+.
T Consensus 137 ka~~lQ~qlE~~qkE~eeL----~~~~~-------~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~ 205 (546)
T PF07888_consen 137 KAQLLQNQLEECQKEKEEL----LKENE-------QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELK 205 (546)
T ss_pred hHHHHHHHHHHHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666665443322 22222 23333344444444444444444444333333322 233
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhh
Q 005569 376 NFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQ 455 (690)
Q Consensus 376 nvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ 455 (690)
.=++.|+....++..|...-|.-++.|+....|...++.-++.- ...+|..-.++..+|+... .-....+
T Consensus 206 ~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~-------~~elEq~~~eLk~rLk~~~---~~~~~~~ 275 (546)
T PF07888_consen 206 EERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKEL-------KAELEQLEAELKQRLKETV---VQLKQEE 275 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 33445555566666666666666666666665555555555431 1112221111112222111 1111111
Q ss_pred hhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHH
Q 005569 456 SMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (690)
Q Consensus 456 ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~A 521 (690)
......- .=.+.||....+|+.+....+.+-.+ |.+||+=+.+.=+..-.-||+|
T Consensus 276 ~~~~~~~----~e~e~LkeqLr~~qe~lqaSqq~~~~-------L~~EL~~~~~~RDrt~aeLh~a 330 (546)
T PF07888_consen 276 TQAQQLQ----QENEALKEQLRSAQEQLQASQQEAEL-------LRKELSDAVNVRDRTMAELHQA 330 (546)
T ss_pred hhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 12356888888888888877755443 4455554443333344445543
No 23
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.24 E-value=0.0011 Score=77.48 Aligned_cols=209 Identities=23% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCC
Q 005569 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (690)
Q Consensus 342 KV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~ 421 (690)
.+.-+..|+++...++..+....+....++..++.=+..|...+..+.+..+.|+.-++.+...-.++.++++-|-.++.
T Consensus 575 ~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~ 654 (859)
T PF01576_consen 575 QLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNS 654 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444555555555555555555555555666666677777777788888888888888998899999999999977665
Q ss_pred CCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhH--------------HHHHH-------hHHHHHHHHhhhhhhhc
Q 005569 422 SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSML--------------YSAIW-------DMETLIEDLKSKVSKAE 480 (690)
Q Consensus 422 ~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~ML--------------ysti~-------DME~lIeDLKsKvsKAE 480 (690)
..+.-..-||..+..+..+|+.+...+++..|+..-. .++.. .||.-|.||+.++.-||
T Consensus 655 ~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E 734 (859)
T PF01576_consen 655 SLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAE 734 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667788888888888888777777776664322 12222 23444556666666555
Q ss_pred ccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHH---HHHHHHh
Q 005569 481 SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQR---ELIQKQV 557 (690)
Q Consensus 481 sraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA~ER---ERL~~Qi 557 (690)
+-+-.- -..-++.|=+||..||+-|......+..+.|-+-.-=+-+++|++|+--+| +|++.++
T Consensus 735 ~~~~~~-------------~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~ 801 (859)
T PF01576_consen 735 QSALKG-------------GKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLV 801 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hhhhcc-------------cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 544321 123578899999999999999999999999999999999999999999888 4666666
Q ss_pred hhhhhh
Q 005569 558 YSLTSE 563 (690)
Q Consensus 558 ~sL~ke 563 (690)
.-|..+
T Consensus 802 ~kl~~k 807 (859)
T PF01576_consen 802 DKLQLK 807 (859)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 555433
No 24
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.03 E-value=0.41 Score=48.80 Aligned_cols=182 Identities=20% Similarity=0.314 Sum_probs=125.1
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHH
Q 005569 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (690)
Q Consensus 333 ~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneE 412 (690)
.++|-+|..++++||.+|-..+-.+ ..+..++..|+--++-.|.-|+.|+--|..+.
T Consensus 3 e~~va~lnrri~~leeele~aqErl---------------------~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdE-- 59 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERL---------------------ATALQKLEEAEQAADESERGMKVIENRAQKLE-- 59 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhhcccHHHHHHHHHHHHHHhhH--
Confidence 3567788888888888776554432 33445555666666666777777766665543
Q ss_pred hhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHH---hhhhhhhcccccccccc
Q 005569 413 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDL---KSKVSKAESKTESVEEQ 489 (690)
Q Consensus 413 L~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDL---KsKvsKAEsraesaE~k 489 (690)
+|++.+|.||+|+..--+.|..-- |.|+--| -+-+--||-||+.+|++
T Consensus 60 ------------E~~e~~e~qLkEAk~iaE~adrK~-----------------eEVarkL~iiE~dLE~~eeraE~~Es~ 110 (205)
T KOG1003|consen 60 ------------EKMEAQEAQLKEAKHIAEKADRKY-----------------EEVARKLVIIEGELERAEERAEAAESQ 110 (205)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 477888888888844333333221 2222111 13345688999999999
Q ss_pred eeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhh----------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 005569 490 CIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA----------SAKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (690)
Q Consensus 490 CilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~s----------tAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~s 559 (690)
|. +|.+++.-+.+-+++|+.+=..+++.--. .-|+-..|+...-.-|.+|=.+|++|...+..
T Consensus 111 ~~-------eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~ 183 (205)
T KOG1003|consen 111 SE-------ELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEE 183 (205)
T ss_pred HH-------HHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHH
Confidence 95 78888888888888888887777654222 23556678888999999999999999999999
Q ss_pred hhhhhhHHHHHHhh
Q 005569 560 LTSENKLLVEKLQY 573 (690)
Q Consensus 560 L~keNkiLv~K~k~ 573 (690)
.+-+++-+..-|-+
T Consensus 184 ~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 184 AKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887766655544
No 25
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.99 E-value=2.1 Score=54.12 Aligned_cols=62 Identities=10% Similarity=0.099 Sum_probs=31.1
Q ss_pred ccccccchHHHhHHHHHHHHHhhhhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHH
Q 005569 203 GKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEV 264 (690)
Q Consensus 203 ~~~~mqt~eqqRniLrMLEkSlA~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~ 264 (690)
+--=|.+++++|.++-=.=+-=.+--..+++|.+......++...+...+...--+++.++.
T Consensus 271 aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEk 332 (1486)
T PRK04863 271 AADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQA 332 (1486)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33338888888877643311112233344444454555555555554444444455554443
No 26
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.88 E-value=2.6 Score=54.05 Aligned_cols=319 Identities=19% Similarity=0.226 Sum_probs=163.0
Q ss_pred HHhhhhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHHHHhhhhccchhHHHhhhcHHhhcccceEEEeecccc
Q 005569 222 KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSL 301 (690)
Q Consensus 222 kSlA~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL~grlqi~QF~Lngs~ 301 (690)
.+=+++.=+++.+...+.-+..++..+...+-..-|-.| |+=-..|..+.+.|==..|-.|-+.+|-.+.---
T Consensus 651 E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~e-------kle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~ 723 (1822)
T KOG4674|consen 651 EKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKE-------KLENLEKNLELTKEEVETLEERNKNLQSTISKQE 723 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888888888888888777665555555444 4444456666666666666677766655544433
Q ss_pred cchhHHhhhHHHHHHHHhhhhHHHHHhhhc----------Cc-------hhhhhH------------------HHHHHHH
Q 005569 302 QRESELKSKLGDFIEQLKAKDMVLQKLEST----------KN-------SEVLTM------------------KEKVKSL 346 (690)
Q Consensus 302 ~RE~eLkSKLe~~~~ql~~k~~~l~Kle~~----------~~-------sE~~tL------------------~eKV~sL 346 (690)
++=..+.+.|-.|=.++...+.-+..|.+. .. +|.-.| ......+
T Consensus 724 q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~ 803 (1822)
T KOG4674|consen 724 QTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKC 803 (1822)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456666666666666666655555532 01 121111 2344455
Q ss_pred HHHHHHhhhhhhhhhhchhh------------------hHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhh
Q 005569 347 EEQLKESEIRLQNANACFQT------------------SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (690)
Q Consensus 347 EkqLrESe~QL~~a~AS~ea------------------~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~E 408 (690)
|.+.++..--|+.++-..+. ++.++.+|..-+..++..+..++++.+..|.|...|
T Consensus 804 e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL------ 877 (1822)
T KOG4674|consen 804 ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSEL------ 877 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 55555555555555544222 122355677777777777777777777777776543
Q ss_pred hHHHhhhhccC----CC-CCcchhhhHHHHHhhHHHHH----HHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhh--
Q 005569 409 LSEEINFLKGN----ND-SNTKKVGILENQLRDLEIQL----QQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVS-- 477 (690)
Q Consensus 409 LneEL~fLk~~----~~-~~s~kv~~LEkqLrEsd~QL----qhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvs-- 477 (690)
+++|.+.+.+ +. .....+..++..||-...|. ..-+.+-.-+.+-|.+.|+ ||..++-.|+++.
T Consensus 878 -~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s----~eqsl~~~ks~lde~ 952 (1822)
T KOG4674|consen 878 -EKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSS----LEQSLESVKSELDET 952 (1822)
T ss_pred -HHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444433322 10 11334555555555554444 3333333334444444444 4555666665553
Q ss_pred --hhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhh-------hhhhHHHHHHHHHHHHH
Q 005569 478 --KAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKE-------VNHRTKLMMEMVMQLAT 548 (690)
Q Consensus 478 --KAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKD-------Ig~rtK~i~dlV~qLA~ 548 (690)
.++.+.++- -+++.=||.|+-.|++..-+-...++..+|+ .-.+.+..-+=+--+-.
T Consensus 953 ~~~~ea~ie~~--------------~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~ 1018 (1822)
T KOG4674|consen 953 RLELEAKIESL--------------HKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLK 1018 (1822)
T ss_pred HHhhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHH
Confidence 233333332 3344444444444444444444444444443 33333333222222222
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHh
Q 005569 549 QRELIQKQVYSLTSENKLLVEKLQ 572 (690)
Q Consensus 549 ERERL~~Qi~sL~keNkiLv~K~k 572 (690)
=+.-...++.++...++-.+...+
T Consensus 1019 ~~s~~~~~~~~~k~dl~~~~~~~~ 1042 (1822)
T KOG4674|consen 1019 AASQANEQIEDLQNDLKTETEQLR 1042 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334456666666665544443
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.79 E-value=2.1 Score=46.90 Aligned_cols=86 Identities=21% Similarity=0.340 Sum_probs=59.7
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhh---hchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhh
Q 005569 333 NSEVLTMKEKVKSLEEQLKESEIRLQNAN---ACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLEL 409 (690)
Q Consensus 333 ~sE~~tL~eKV~sLEkqLrESe~QL~~a~---AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~EL 409 (690)
+..+-.|.+....|+.++++.+..+.... ......+.++.+.++.|...++.+.....+....+.....|...+.++
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 34566677777777777777776655333 223334556788888888888888888777777788887777777777
Q ss_pred HHHhhhhcc
Q 005569 410 SEEINFLKG 418 (690)
Q Consensus 410 neEL~fLk~ 418 (690)
+++|..|..
T Consensus 378 ~~~l~~l~~ 386 (562)
T PHA02562 378 AEELAKLQD 386 (562)
T ss_pred HHHHHHHHH
Confidence 766655544
No 28
>PLN02939 transferase, transferring glycosyl groups
Probab=95.55 E-value=0.15 Score=61.28 Aligned_cols=204 Identities=25% Similarity=0.356 Sum_probs=115.0
Q ss_pred hhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhh----hhhH
Q 005569 320 AKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR----AESA 395 (690)
Q Consensus 320 ~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESR----Ae~A 395 (690)
++-.+++.++. .-.|--.|+.||+-||-.|-|++.++..+..-. ...++ .|.-.+.|.-.+..-..- --.-
T Consensus 150 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (977)
T PLN02939 150 ARLQALEDLEK-ILTEKEALQGKINILEMRLSETDARIKLAAQEK--IHVEI--LEEQLEKLRNELLIRGATEGLCVHSL 224 (977)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhcc--ccchh--hHHHHHHHhhhhhccccccccccccH
Confidence 34445555554 345666899999999999999988876553221 11111 111122222221111100 0001
Q ss_pred HHhhhhhccchhhhHHHhhhhccCCC---CCcchhhh-------HHHHHhhHHHHHHHhHhhhh-hhHHhhhhHHHHHHh
Q 005569 396 EEKVTQLTDTNLELSEEINFLKGNND---SNTKKVGI-------LENQLRDLEIQLQQAKVSSE-ASQEQQSMLYSAIWD 464 (690)
Q Consensus 396 E~kc~~LteTN~ELneEL~fLk~~~~---~~s~kv~~-------LEkqLrEsd~QLqhAkAS~e-As~EqQ~MLysti~D 464 (690)
-.-|..|-+.|+-|.+.+.|||...+ .+.+++-- |+..|+|++..+--|.+-+- -+-=|..-++--+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVEN 304 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHH
Confidence 23477888899999999999987531 12334433 44456666655533322211 111122234444444
Q ss_pred HHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHH-
Q 005569 465 METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMV- 543 (690)
Q Consensus 465 ME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV- 543 (690)
.+++.+-..-.+ ++.+++.+.|-+ ||.+|+.||.||.+||-.|.++- .| ++.
T Consensus 305 ~~~~~~~~~~~~-----------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~ 357 (977)
T PLN02939 305 LQDLLDRATNQV-----------EKAALVLDQNQD-------LRDKVDKLEASLKEANVSKFSSY--------KV-ELLQ 357 (977)
T ss_pred HHHHHHHHHHHH-----------HHHHHHhccchH-------HHHHHHHHHHHHHHhhHhhhhHH--------HH-HHHH
Confidence 555555444444 344666677765 58999999999999999999765 33 443
Q ss_pred HHHHHHHHHHHH
Q 005569 544 MQLATQRELIQK 555 (690)
Q Consensus 544 ~qLA~ERERL~~ 555 (690)
-|+...+|||+.
T Consensus 358 ~~~~~~~~~~~~ 369 (977)
T PLN02939 358 QKLKLLEERLQA 369 (977)
T ss_pred HHHHHHHHHHHh
Confidence 677777887754
No 29
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.44 E-value=0.058 Score=51.39 Aligned_cols=132 Identities=30% Similarity=0.361 Sum_probs=93.9
Q ss_pred HHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhh
Q 005569 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 457 (690)
Q Consensus 378 IedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~M 457 (690)
+..||-....|..|++.+|++++.|...|.++..|+..|.. |...||.+|-.++.+|..++..++.+....+-
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~-------K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~ 74 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQK-------KNQQLEEELDKLEEQLKEAKEKLEESEKRKSN 74 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 35678888999999999999999999999999999999976 99999999999999999998887776432211
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhh---hhhhhhhh
Q 005569 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA---ASAKEVNH 534 (690)
Q Consensus 458 Lysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~---stAKDIg~ 534 (690)
+| -|=.|+.-||..|.+|...=. ....++..
T Consensus 75 ----------------------------~E------------------~l~rriq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 75 ----------------------------AE------------------QLNRRIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred ----------------------------HH------------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122344444444444432111 12345556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005569 535 RTKLMMEMVMQLATQRELIQKQVYSLTS 562 (690)
Q Consensus 535 rtK~i~dlV~qLA~ERERL~~Qi~sL~k 562 (690)
++--+-.-|..|=.+|......+..+..
T Consensus 109 ~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 109 KAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred HhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6667777777777777777776666644
No 30
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.29 E-value=0.0048 Score=72.48 Aligned_cols=230 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHh
Q 005569 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (690)
Q Consensus 334 sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL 413 (690)
.++-..+..+..||+..+-.+.++.-.++-.+..+........=...+...+++-.+..+.+...+..|...|-.|..||
T Consensus 363 ~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El 442 (859)
T PF01576_consen 363 SELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDEL 442 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444455555555555555544444433333222222222223333333333334444555556677788899999
Q ss_pred hhhccCCCCCcchhhhHHHHHhhHHHHHHHh-------HhhhhhhHHhhhhHHHHHHhHHHHH-HHHhhhhhhhcccccc
Q 005569 414 NFLKGNNDSNTKKVGILENQLRDLEIQLQQA-------KVSSEASQEQQSMLYSAIWDMETLI-EDLKSKVSKAESKTES 485 (690)
Q Consensus 414 ~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhA-------kAS~eAs~EqQ~MLysti~DME~lI-eDLKsKvsKAEsraes 485 (690)
.-|.++.+.....+..||+..+.++.+++.. -++..+-.-+--=|...|.+|-+=| .+|..|=.-. +.
T Consensus 443 ~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~----E~ 518 (859)
T PF01576_consen 443 EDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEF----EE 518 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HH
Confidence 9998775444556777777777766665554 3333332222222334444443333 1222222111 11
Q ss_pred ccccee-eecccchhhhhh----------hhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHH---H
Q 005569 486 VEEQCI-VLSEDNFELKNK----------QSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQR---E 551 (690)
Q Consensus 486 aE~kCi-lLSetN~ELneE----------LsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA~ER---E 551 (690)
+--+|- =|-.=+.+|-.| =.=|.+.+..||..|.-||..+..+.|.|..-...|+||-++|--.+ +
T Consensus 519 ~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~ 598 (859)
T PF01576_consen 519 TRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRARE 598 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 111121 112222333222 23366778889999999999999999999998999999988876543 4
Q ss_pred HHHHHhhhhhhhhhHH
Q 005569 552 LIQKQVYSLTSENKLL 567 (690)
Q Consensus 552 RL~~Qi~sL~keNkiL 567 (690)
-+..++..+=+..+.|
T Consensus 599 ~~~~~~~~~e~r~~~l 614 (859)
T PF01576_consen 599 ELREQLAVSERRLRAL 614 (859)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555554444445444
No 31
>PRK03918 chromosome segregation protein; Provisional
Probab=95.24 E-value=8.1 Score=44.95 Aligned_cols=62 Identities=8% Similarity=0.147 Sum_probs=27.4
Q ss_pred HHhhhhHHHHHHhHHHHHHHHh-----hhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhH
Q 005569 452 QEQQSMLYSAIWDMETLIEDLK-----SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (690)
Q Consensus 452 ~EqQ~MLysti~DME~lIeDLK-----sKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~ 520 (690)
+++-+-|..-|...+.-|++|. ..+...+.+.+.++.++ .++..++.=++++++.++..+..
T Consensus 632 ~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l-------~~l~~~~~~l~~~i~~l~~~i~~ 698 (880)
T PRK03918 632 FEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSREL-------AGLRAELEELEKRREEIKKTLEK 698 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444555554 44444444444444433 33334444444444444444433
No 32
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.93 E-value=0.0069 Score=69.31 Aligned_cols=185 Identities=22% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhH------HHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHh
Q 005569 373 EMDNFIESLKESLYGAESRAESA------EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (690)
Q Consensus 373 dMEnvIedLKekv~kAESRAe~A------E~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkA 446 (690)
+.+.-|..|+..+...++.+... =.++..|..+|.+|..|+..||..- +.+++||.+.+.+..+|+.+..
T Consensus 227 e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~----~n~elLeEe~~sLq~kl~~~E~ 302 (722)
T PF05557_consen 227 EAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQ----ENVELLEEEKRSLQRKLERLEE 302 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666665555555443111 1357789999999999999999963 5799999999999888887764
Q ss_pred hhhhhHH---hhhhHHHHHHhHHHHHHHHhhhhhhhc---ccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhH
Q 005569 447 SSEASQE---QQSMLYSAIWDMETLIEDLKSKVSKAE---SKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (690)
Q Consensus 447 S~eAs~E---qQ~MLysti~DME~lIeDLKsKvsKAE---sraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~ 520 (690)
.-....+ +-.-|-.=..++..++.|.-..+..-+ .+.....-.++.|.+.+-.+.-++.=++..+..|+....+
T Consensus 303 ~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~ 382 (722)
T PF05557_consen 303 LEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQ 382 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4333332 233344444555555555321111000 1122233456777777777777777777777777665544
Q ss_pred HhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 005569 521 ANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (690)
Q Consensus 521 An~~K~stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~sL~keNkiLv~K~k 572 (690)
+... +..++ .+.+ .+...+.||..|...++++...|-.-|+
T Consensus 383 l~~~-~~~l~---~~~~-------~~~~~~~RLerq~~L~~kE~d~LR~~L~ 423 (722)
T PF05557_consen 383 LLKE-IEELE---ASLE-------ALKKLIRRLERQKALATKERDYLRAQLK 423 (722)
T ss_dssp ----------------------------------------------------
T ss_pred HHHH-HHHHH---HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 11111 1111 1222334555566666666666655555
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.92 E-value=0.87 Score=53.32 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=66.7
Q ss_pred HHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccc-------hhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHH
Q 005569 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT-------NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (690)
Q Consensus 369 eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteT-------N~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QL 441 (690)
....+||+=|..|.-.+-..|.+...+|..+..|=.. --.|--.|+.+++ |..-||+.|.. ++.+
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd-------k~~~LE~sLsa-Etri 616 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQD-------KNQHLENSLSA-ETRI 616 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-------HHHHHHHhhhH-HHHH
Confidence 3477999999999999998999988888877533322 1235566677766 88889998852 1222
Q ss_pred HHhH-hhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhh
Q 005569 442 QQAK-VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSK 478 (690)
Q Consensus 442 qhAk-AS~eAs~EqQ~MLysti~DME~lIeDLKsKvsK 478 (690)
-.-- -+-....-|..++-+.|.-=|.-|.|||.|+..
T Consensus 617 KldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 617 KLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 112233445556666676778889999998754
No 34
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.92 E-value=4.7 Score=51.81 Aligned_cols=259 Identities=21% Similarity=0.282 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCC
Q 005569 107 SELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNN 186 (690)
Q Consensus 107 SEVrELe~~~~tlq~~I~~~~~ki~s~~hl~e~f~~m~~~~~KL~d~~~sLkQ~qe~i~eIk~Qsa~Fqr~~~~~~~~~~ 186 (690)
.|+..|+.--..+|.-|......+ ..+-..|..|..-+++..-.++-+|.+..-|-.+...+.....
T Consensus 703 ~e~~tL~er~~~l~~~i~~~~q~~-------------~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~ 769 (1822)
T KOG4674|consen 703 EEVETLEERNKNLQSTISKQEQTV-------------HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELE 769 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555443322 2345678888888888888888888888877777655442111
Q ss_pred ccchhhcccCCcccccccccccchHHHhHHHHHHHHHhhhhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHHH
Q 005569 187 DEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVW 266 (690)
Q Consensus 187 ~~~~~~~e~g~~~n~~~~~~mqt~eqqRniLrMLEkSlA~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~ 266 (690)
. +..-+.+-......||| +-+++.+.+ -|..-++|.++.+.......||-++ +...-.+.+.....-
T Consensus 770 ~-----l~~e~~~L~~~l~~lQt---~~~~~e~s~--~~~k~~~e~~i~eL~~el~~lk~kl---q~~~~~~r~l~~~~~ 836 (1822)
T KOG4674|consen 770 K-----LSAEQESLQLLLDNLQT---QKNELEESE--MATKDKCESRIKELERELQKLKKKL---QEKSSDLRELTNSLE 836 (1822)
T ss_pred H-----HHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhh
Confidence 0 00011111123345555 233343333 2445567788888877777887775 444444444433322
Q ss_pred HhhhhccchhHHHhhhcHHhhcccceEEEeecccccchhHHhhhHHHHHHHHhhhhHHHHHhhh----------------
Q 005569 267 GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES---------------- 330 (690)
Q Consensus 267 ~R~~eAeNAsEvL~GiSKeL~grlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~Kle~---------------- 330 (690)
--.-.|-|-- +++.+.+..-++.+......+.+++.
T Consensus 837 ~~l~~~~~~i----------------------------~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~ 888 (1822)
T KOG4674|consen 837 KQLENAQNLV----------------------------DELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQL 888 (1822)
T ss_pred hHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 1111111111 22222222222222222222222221
Q ss_pred ------cCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhh----hhhhhhhhhHHHhhh
Q 005569 331 ------TKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL----YGAESRAESAEEKVT 400 (690)
Q Consensus 331 ------~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv----~kAESRAe~AE~kc~ 400 (690)
+.+..+-.+-+.+...+.|.-....+|..|.+-...+++.+.-++..++.+|... ..++.|.+.-+.|.+
T Consensus 889 ~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~t 968 (1822)
T KOG4674|consen 889 LNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKIT 968 (1822)
T ss_pred hhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0122222222222222222222233344444444445666666666666666554 456777777777777
Q ss_pred hhccchhhhHHHhhhhccC
Q 005569 401 QLTDTNLELSEEINFLKGN 419 (690)
Q Consensus 401 ~LteTN~ELneEL~fLk~~ 419 (690)
.|-+-=++|.+++.-|++.
T Consensus 969 slE~~ls~L~~~~~~l~~e 987 (1822)
T KOG4674|consen 969 SLEEELSELEKEIENLREE 987 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7776667777777777753
No 35
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.33 E-value=4.5 Score=43.72 Aligned_cols=97 Identities=25% Similarity=0.376 Sum_probs=67.8
Q ss_pred HHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHH
Q 005569 460 SAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLM 539 (690)
Q Consensus 460 sti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i 539 (690)
+-|..||++--.=..||+|.-.+-+|+|+.-.= |--|=-+||.-++- --.+|. .|-.++-||-.+ |
T Consensus 193 ~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Q-------lqsEN~LLrQQLdd---A~~K~~-~kek~ViniQ~~---f 258 (305)
T PF14915_consen 193 CQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQ-------LQSENMLLRQQLDD---AHNKAD-NKEKTVINIQDQ---F 258 (305)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH---HHHHHH-HHHHHHhhHHHH---H
Confidence 347899999999999999999999999987432 33333455554332 222221 233344455433 6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 005569 540 MEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (690)
Q Consensus 540 ~dlV~qLA~ERERL~~Qi~sL~keNkiLv~K~k~ 573 (690)
-|.|.+|-.|+|. |...|-.+||-|+.+|..
T Consensus 259 ~d~~~~L~ae~ek---q~lllEErNKeL~ne~n~ 289 (305)
T PF14915_consen 259 QDIVKKLQAESEK---QVLLLEERNKELINECNH 289 (305)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHH
Confidence 7899999999875 888899999999999874
No 36
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=0.89 Score=54.14 Aligned_cols=193 Identities=19% Similarity=0.195 Sum_probs=121.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhchhhhH-------HHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhh---hhccch
Q 005569 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQ-------EQLNEMDNFIESLKESLYGAESRAESAEEKVT---QLTDTN 406 (690)
Q Consensus 337 ~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~-------eqisdMEnvIedLKekv~kAESRAe~AE~kc~---~LteTN 406 (690)
-.+.+-++.+-.-.++.+.|+++-+....+.+ +++.+.-.-+..||+.+..-+.+..++-.+-- +..+.+
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~ 732 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEAS 732 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhc
Confidence 34445555566666666666666555443322 22333333344455555555555544443333 444567
Q ss_pred hhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhh------------
Q 005569 407 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS------------ 474 (690)
Q Consensus 407 ~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKs------------ 474 (690)
--.++||+.++....+...+-+.|.++|.+-+.-.++-|+...--.=.|+-+--..+|=|++||++|.
T Consensus 733 ~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q 812 (970)
T KOG0946|consen 733 KTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQ 812 (970)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHH
Confidence 77889999999865444446778888885444445556666664555678888889999999999543
Q ss_pred ---------------hhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhh
Q 005569 475 ---------------KVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAK 530 (690)
Q Consensus 475 ---------------KvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAK 530 (690)
+.+-+-.-.++.++.|-+++..+--...+|+-|..|++.+-|- -.+..+|.++.+
T Consensus 813 ~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nl-i~~ltEk~~sl~ 882 (970)
T KOG0946|consen 813 SELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNL-IKELTEKISSLE 882 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhH-HHHHhhhhhhHH
Confidence 1112222345667899999999999999999999999888664 345555654444
No 37
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.25 E-value=14 Score=43.04 Aligned_cols=143 Identities=25% Similarity=0.272 Sum_probs=97.6
Q ss_pred CchhhhhHHHHHH-HHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhH
Q 005569 332 KNSEVLTMKEKVK-SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 410 (690)
Q Consensus 332 ~~sE~~tL~eKV~-sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELn 410 (690)
+.+..+.+.++|. .|.+++.+..-++..+.--....|++++.|..+|++++.-+..-+.++..|++||.+.-+++-++.
T Consensus 408 ~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~ 487 (581)
T KOG0995|consen 408 AATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEW 487 (581)
T ss_pred CccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777765 567778888888877777777889999999999999999999999999999999999998887653
Q ss_pred -----------HHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhh------HHHHHHh----HHHHH
Q 005569 411 -----------EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM------LYSAIWD----METLI 469 (690)
Q Consensus 411 -----------eEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~M------Lysti~D----ME~lI 469 (690)
++|..|+-.- -...-..+..++.+++.|+.++++.+ .|.|.. +|-.|.| |+-=|
T Consensus 488 ~k~~~E~e~le~~l~~l~l~~---~~~m~~a~~~v~s~e~el~~~~~~~~--eer~ki~~ql~~~i~~i~~~k~~iqs~l 562 (581)
T KOG0995|consen 488 KKCRKEIEKLEEELLNLKLVL---NTSMKEAEELVKSIELELDRMVATGE--EERQKIAKQLFAVIDQISDFKVSIQSSL 562 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444422 12333444555555666666655543 455544 4455555 23335
Q ss_pred HHHhhhhhhh
Q 005569 470 EDLKSKVSKA 479 (690)
Q Consensus 470 eDLKsKvsKA 479 (690)
+|+|-.+-|+
T Consensus 563 e~~k~~~~~~ 572 (581)
T KOG0995|consen 563 ENLKADLHKE 572 (581)
T ss_pred HHHHHHHHHH
Confidence 6666655544
No 38
>PRK01156 chromosome segregation protein; Provisional
Probab=94.10 E-value=16 Score=43.15 Aligned_cols=12 Identities=8% Similarity=-0.208 Sum_probs=7.0
Q ss_pred HHHHHhhhhccc
Q 005569 263 EVVWGRFLEAEN 274 (690)
Q Consensus 263 e~v~~R~~eAeN 274 (690)
..+|+++.....
T Consensus 452 ~~~Cp~c~~~~~ 463 (895)
T PRK01156 452 QSVCPVCGTTLG 463 (895)
T ss_pred CCCCCCCCCcCC
Confidence 456666666555
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.84 E-value=16 Score=42.32 Aligned_cols=194 Identities=21% Similarity=0.291 Sum_probs=100.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchh------
Q 005569 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL------ 407 (690)
Q Consensus 334 sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~------ 407 (690)
.++.+.+++...|+.+.++.....+......+....+..++.--|..|.+.+-....+....+.-+..|.+-+.
T Consensus 178 ~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~ 257 (546)
T PF07888_consen 178 AELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLE 257 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666665555555544444444444444444444444444444444333333333322222
Q ss_pred -hhHHHh----hhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHH--------------
Q 005569 408 -ELSEEI----NFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETL-------------- 468 (690)
Q Consensus 408 -ELneEL----~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~l-------------- 468 (690)
+|.+.| .-++.. ..++..++..+..+.-||..+..-..||+-+=.+|..-.+||=++
T Consensus 258 ~eLk~rLk~~~~~~~~~----~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe 333 (546)
T PF07888_consen 258 AELKQRLKETVVQLKQE----ETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLE 333 (546)
T ss_pred HHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 222222 222221 113445666777788888999999999988888888888888776
Q ss_pred HHHHhhhhhhh-----cccccccccceeeecccchhhh-hhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhh
Q 005569 469 IEDLKSKVSKA-----ESKTESVEEQCIVLSEDNFELK-NKQSFMRDKIKILESSLNRANIEKAASAKEVN 533 (690)
Q Consensus 469 IeDLKsKvsKA-----EsraesaE~kCilLSetN~ELn-eELsFLR~R~e~LE~sL~~An~~K~stAKDIg 533 (690)
.++|+.+.+.| |.++.-+.++=++. .++|.. +++.=|-.++..++..|++..-....=.++||
T Consensus 334 ~aql~~qLad~~l~lke~~~q~~qEk~~l~--~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ 402 (546)
T PF07888_consen 334 AAQLKLQLADASLELKEGRSQWAQEKQALQ--HSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLG 402 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444 23333333333333 233333 24555555555555555544444444445555
No 40
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.54 E-value=2.3 Score=40.68 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=22.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHh
Q 005569 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN 372 (690)
Q Consensus 334 sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqis 372 (690)
-|+.+|+.|++.||.+|-..+.+|..++...+......+
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~ 73 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS 73 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456666666666666666666665555555444443333
No 41
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.48 E-value=2.1 Score=41.43 Aligned_cols=129 Identities=23% Similarity=0.242 Sum_probs=82.7
Q ss_pred HHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhc
Q 005569 324 VLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403 (690)
Q Consensus 324 ~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~Lt 403 (690)
+..+|.. +.++.-+|.++|-+||+.|..++..++++..-++.++..+.+|+.=|. ..-+....-+.-..-|+
T Consensus 8 v~~kLK~-~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~-------~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 8 VEEKLKE-SESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELE-------ELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHH-HHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3445555 467888999999999999999999988888887777666555444333 33333333444445566
Q ss_pred cchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHh
Q 005569 404 DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLK 473 (690)
Q Consensus 404 eTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLK 473 (690)
.-+..|..+|.-.++ ||..||.........|+-.-+- +=-|.-.+=.+++.|-.+||
T Consensus 80 sEk~~L~k~lq~~q~-------kv~eLE~~~~~~~~~l~~~E~e------k~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 80 SEKENLDKELQKKQE-------KVSELESLNSSLENLLQEKEQE------KVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh
Confidence 777777777777766 7888887777766555533221 22333334445555555544
No 42
>PRK11637 AmiB activator; Provisional
Probab=93.05 E-value=15 Score=40.05 Aligned_cols=84 Identities=23% Similarity=0.350 Sum_probs=44.0
Q ss_pred hHHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHh
Q 005569 305 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 384 (690)
Q Consensus 305 ~eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKek 384 (690)
++++.+|++...+++.....+.. ++.+...++++++..+.++..+.......+.+|...+.=|..+...
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~-----------~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQ-----------QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655544444333 3334444555555555555555444444555555555555555555
Q ss_pred hhhhhhhhhhHHHhh
Q 005569 385 LYGAESRAESAEEKV 399 (690)
Q Consensus 385 v~kAESRAe~AE~kc 399 (690)
+..++.+.+..+...
T Consensus 112 I~~~q~~l~~~~~~l 126 (428)
T PRK11637 112 IAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444444
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=25 Score=41.92 Aligned_cols=242 Identities=23% Similarity=0.247 Sum_probs=123.8
Q ss_pred hHHHhhhcHHhhcccceEEEeecccccchhHHhhhHHHHHHHHhhhhHHHHHhhhcCch-hhh-hHHHHHHHHHHHHHHh
Q 005569 276 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNS-EVL-TMKEKVKSLEEQLKES 353 (690)
Q Consensus 276 sEvL~GiSKeL~grlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~Kle~~~~s-E~~-tL~eKV~sLEkqLrES 353 (690)
.|.++|.+|+..++|+ -|...-++.+.-+-..+.+.+.+... -.. ...-++..++.+..+.
T Consensus 380 le~~k~~~ke~~~~~~-----------------~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~L 442 (698)
T KOG0978|consen 380 LEMLKSLLKEQRDKLQ-----------------VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEEL 442 (698)
T ss_pred HHHHhCCCHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHH
Confidence 3789999999999888 23333333343333444444432110 000 1112344555555555
Q ss_pred hhhhhhhhhchhhhH---HHHhhhHHHHHHHHHhhhhhh-------hhhhhHHHhhhhhccchhhhHHHhhhhccCCCCC
Q 005569 354 EIRLQNANACFQTSQ---EQLNEMDNFIESLKESLYGAE-------SRAESAEEKVTQLTDTNLELSEEINFLKGNNDSN 423 (690)
Q Consensus 354 e~QL~~a~AS~ea~~---eqisdMEnvIedLKekv~kAE-------SRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~ 423 (690)
.....+.++.....+ .-+.||+..|-.|=..+-+++ +--.++=.+.+.|.+.-..|++.+.-|+.+.+..
T Consensus 443 qk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~ 522 (698)
T KOG0978|consen 443 QKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKL 522 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554433322 234556655555544444443 4445666677777777777888888887765555
Q ss_pred cchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhh
Q 005569 424 TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNK 503 (690)
Q Consensus 424 s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneE 503 (690)
..+++-||.|+|-+- +.....+++.++|+ ..|+.+|.++. |+..+
T Consensus 523 ~~~i~~leeq~~~lt--------~~~~~l~~el~~~~------~~le~~kk~~~---------------------e~~~~ 567 (698)
T KOG0978|consen 523 ELKIGKLEEQERGLT--------SNESKLIKELTTLT------QSLEMLKKKAQ---------------------EAKQS 567 (698)
T ss_pred HHHHHHHHHHHHHhh--------HhhhhhHHHHHHHH------HHHHHHHHHHH---------------------HHHHH
Confidence 566677777766552 33334444444442 23444444442 33345
Q ss_pred hhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh------HHHHHHhh
Q 005569 504 QSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENK------LLVEKLQY 573 (690)
Q Consensus 504 LsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~sL~keNk------iLv~K~k~ 573 (690)
+.||+.+++..++-|.+....=..+.-.| ..++-=--+|=-|=+||+..+..+-+.+. +|++-+++
T Consensus 568 ~~~Lq~~~ek~~~~le~i~~~~~e~~~el----e~~~~k~~rleEE~e~L~~kle~~k~~~~~~s~d~~L~EElk~ 639 (698)
T KOG0978|consen 568 LEDLQIELEKSEAKLEQIQEQYAELELEL----EIEKFKRKRLEEELERLKRKLERLKKEESGASADEVLAEELKE 639 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 55666666666666655554322222222 22222223344455555555555544443 45555554
No 44
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.67 E-value=9.8 Score=44.96 Aligned_cols=75 Identities=21% Similarity=0.194 Sum_probs=53.0
Q ss_pred HhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceee---e-ccc---chhhhhhhhhhhhHHHHHHHhHhHHhHhh
Q 005569 453 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIV---L-SED---NFELKNKQSFMRDKIKILESSLNRANIEK 525 (690)
Q Consensus 453 EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCil---L-Set---N~ELneELsFLR~R~e~LE~sL~~An~~K 525 (690)
|-.-+++.-+.|||.=|.-|.-..-..|.+...+|...-- . .|+ --.|--.|+.||.+-.-||+||-..+-.|
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriK 617 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIK 617 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5566788888899888877777666666666666654310 0 222 12366789999999999999998877777
Q ss_pred hh
Q 005569 526 AA 527 (690)
Q Consensus 526 ~s 527 (690)
+.
T Consensus 618 ld 619 (697)
T PF09726_consen 618 LD 619 (697)
T ss_pred HH
Confidence 53
No 45
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=92.28 E-value=25 Score=40.22 Aligned_cols=127 Identities=21% Similarity=0.284 Sum_probs=91.2
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHH
Q 005569 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (690)
Q Consensus 332 ~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELne 411 (690)
...++..+++++..+...|.+ +.+..|....+..+++|..|=.+++.=-.+-...+.....-......+.+.|-+|..
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~--l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~ 327 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKN--LELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE 327 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666643 356677777777778888777777766666666677777778888889999999999
Q ss_pred HhhhhccCC---CCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHh
Q 005569 412 EINFLKGNN---DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWD 464 (690)
Q Consensus 412 EL~fLk~~~---~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~D 464 (690)
|+..++.+= ..-..++..|++++.....+.+..... .+.+..-||.|.+
T Consensus 328 e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~----i~~~~~~yS~i~~ 379 (560)
T PF06160_consen 328 ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEER----IEEQQVPYSEIQE 379 (560)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCcCHHHHHH
Confidence 999999761 112458889999998887777666544 4455666766654
No 46
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.25 E-value=24 Score=40.03 Aligned_cols=269 Identities=24% Similarity=0.270 Sum_probs=119.0
Q ss_pred hhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHHHHhhhhccchhHHHhhhcHHhhcccceEEEeecccccchhHHh
Q 005569 229 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 308 (690)
Q Consensus 229 DLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL~grlqi~QF~Lngs~~RE~eLk 308 (690)
+.-+.|..-+.+.++|++||-....+.-.-.+..+..=-|+=+.+. |++..-.+. ++
T Consensus 59 ~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~------~~~~~~~~~-----------------~k 115 (522)
T PF05701_consen 59 QALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQ------GIAEEASVA-----------------WK 115 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhh------hhcccchHH-----------------HH
Confidence 4445666778899999999966555444555555544444433322 222221111 33
Q ss_pred hhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhh
Q 005569 309 SKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA 388 (690)
Q Consensus 309 SKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kA 388 (690)
..|+..-.|.. .++.-|.+ ...|+..++..+.++=..-.-.-.|-..|...+.....++.++-.=|..+|+.+.-+
T Consensus 116 ~ele~~~~q~~---~~~~eL~~-~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~ 191 (522)
T PF05701_consen 116 AELESAREQYA---SAVAELDS-VKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESA 191 (522)
T ss_pred HHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433333322 11112222 223333333333322222222222233333333444455666666666677666665
Q ss_pred hhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHH
Q 005569 389 ESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETL 468 (690)
Q Consensus 389 ESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~l 468 (690)
..-...|+.....+-... +. ....+++.|.+.+-.++..+-..++++.=++-|-.|..|.+.+
T Consensus 192 ~~a~~eAeee~~~~~~~~---~~--------------~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~L 254 (522)
T PF05701_consen 192 KLAHIEAEEERIEIAAER---EQ--------------DAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESL 254 (522)
T ss_pred HHHHHHHHHHHHHHHHHH---HH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444443333221111 01 1222333333333333333333344444444444444443333
Q ss_pred HHHHhhhhh-hhccccccccccee----------eecccchhh---hhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhh
Q 005569 469 IEDLKSKVS-KAESKTESVEEQCI----------VLSEDNFEL---KNKQSFMRDKIKILESSLNRANIEKAASAKEVNH 534 (690)
Q Consensus 469 IeDLKsKvs-KAEsraesaE~kCi----------lLSetN~EL---neELsFLR~R~e~LE~sL~~An~~K~stAKDIg~ 534 (690)
=..|+.... +.+..++....-+. =|.+.+.+| .+|++-||.-+++|..-|.++......+=...+.
T Consensus 255 q~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~ 334 (522)
T PF05701_consen 255 QAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKE 334 (522)
T ss_pred HHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 11111100000000 022333333 4789999999999999998887776665554443
Q ss_pred hHHHHHH
Q 005569 535 RTKLMME 541 (690)
Q Consensus 535 rtK~i~d 541 (690)
-.-.|-.
T Consensus 335 a~~~v~~ 341 (522)
T PF05701_consen 335 ASSEVSS 341 (522)
T ss_pred HHhHHhh
Confidence 3333333
No 47
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.23 E-value=12 Score=43.48 Aligned_cols=101 Identities=22% Similarity=0.208 Sum_probs=77.3
Q ss_pred hHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhH
Q 005569 457 MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT 536 (690)
Q Consensus 457 MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rt 536 (690)
-|-.+++-|.++|+.+++-+..-+.++-.++++|=+.-+++-|+ ..--|.-++.||..|+.-+-.=-..-++-+-+-
T Consensus 443 tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee---~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v 519 (581)
T KOG0995|consen 443 TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEE---WKKCRKEIEKLEEELLNLKLVLNTSMKEAEELV 519 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999999999888877654 456788999999999988766555555544444
Q ss_pred HHHH----HHHHHHHHHHHHHHHHhhhh
Q 005569 537 KLMM----EMVMQLATQRELIQKQVYSL 560 (690)
Q Consensus 537 K~i~----dlV~qLA~ERERL~~Qi~sL 560 (690)
+-|- .+|.-.--||..+++||.-+
T Consensus 520 ~s~e~el~~~~~~~~eer~ki~~ql~~~ 547 (581)
T KOG0995|consen 520 KSIELELDRMVATGEEERQKIAKQLFAV 547 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 23444556788899998765
No 48
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.08 E-value=41 Score=42.30 Aligned_cols=164 Identities=15% Similarity=0.173 Sum_probs=109.4
Q ss_pred hHHHhHHHHHHHHHhh-hhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHHHHhhhhccchhHHHhhhcHHhhc
Q 005569 210 ADQQRHILRMLEKSLA-RELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLG 288 (690)
Q Consensus 210 ~eqqRniLrMLEkSlA-~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL~g 288 (690)
.|-|+--++=..+.+- +..++-+++.+...-.-..+-+|-++=+-.--+|-..+..-..-++++|+.|-.-+...
T Consensus 368 ~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~---- 443 (1293)
T KOG0996|consen 368 NEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQ---- 443 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHH----
Confidence 3455555666666666 56677788887776555555555555555666666666666667778887775443332
Q ss_pred ccceEEEeecccccchhHHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhH
Q 005569 289 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ 368 (690)
Q Consensus 289 rlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~ 368 (690)
++.+.+.++.+++..-+..+.+...+.+-+-..++++...+|+.|.-...|+..|++-.+.++
T Consensus 444 -----------------~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vae 506 (1293)
T KOG0996|consen 444 -----------------KCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAE 506 (1293)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455554444444444444444455567888999999999999999999999988899
Q ss_pred HHHhhhHHHHHHHHHhhhhhhhhhhh
Q 005569 369 EQLNEMDNFIESLKESLYGAESRAES 394 (690)
Q Consensus 369 eqisdMEnvIedLKekv~kAESRAe~ 394 (690)
+++.+|...-+....+|-.+..+.+.
T Consensus 507 sel~~L~~~~~~~~~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 507 SELDILLSRHETGLKKVEELKGKLLA 532 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877777777666665554
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.90 E-value=41 Score=41.85 Aligned_cols=47 Identities=23% Similarity=0.410 Sum_probs=28.8
Q ss_pred HHHhhhcHHhhcccceEEEeecccccchhHHhhhHHHHHHHHhhhhHHHHHhh
Q 005569 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLE 329 (690)
Q Consensus 277 EvL~GiSKeL~grlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~Kle 329 (690)
.-|+|++ |+........+..-|.+|+.+++..-.++.......+.++
T Consensus 581 dslyGl~------LdL~~I~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e 627 (1201)
T PF12128_consen 581 DSLYGLS------LDLSAIDVPDYAASEEELRERLEQAEDQLQSAEERQEELE 627 (1201)
T ss_pred cccceeE------eehhhcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677766 3333334455667788899888777777665544444444
No 50
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.90 E-value=15 Score=42.34 Aligned_cols=327 Identities=22% Similarity=0.280 Sum_probs=205.9
Q ss_pred chHHHhHHHHHHHHHh--------hhhhhhhhhhhHhhhhHHHhhhhhcchhh----hHHHHHhhHHHHHHhhhhccchh
Q 005569 209 NADQQRHILRMLEKSL--------ARELDLEKKISELNQNEEQLKLKLHHTEQ----VAFRMEEAAEVVWGRFLEAENSA 276 (690)
Q Consensus 209 t~eqqRniLrMLEkSl--------A~ElDLEKkL~esr~~eEeLklKlh~~Eq----e~~~mEE~ae~v~~R~~eAeNAs 276 (690)
|.+||---=+|.||.| -+=||++-+-.. .+++||+..--.=| +.-.+-+.-+.+|+..=+|.--+
T Consensus 218 tl~qq~~~e~~Vek~lfdY~~~~Y~~fl~~~~~~~~---~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s 294 (622)
T COG5185 218 TLDQQDRYELMVEKLLFDYFTESYKSFLKLEDNYEP---SEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKIS 294 (622)
T ss_pred hHhhccHHHHHHHHHHHHHHHHHHHHHhcCCCccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566633345666655 234555544333 34555554321111 12233444555666666655444
Q ss_pred HHHhhhcHHhhcccceEEEeecccccchhHHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhh
Q 005569 277 EVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (690)
Q Consensus 277 EvL~GiSKeL~grlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~Q 356 (690)
+- | +.|-.|-..+|-.+|-...-++-+|+|-+.-.-.++......++ ..+|+..|+.+..+|-+|++.-++-
T Consensus 295 ~~---i-~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~----kEeei~~L~~~~d~L~~q~~kq~Is 366 (622)
T COG5185 295 QK---I-KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL----KEEEIKALQSNIDELHKQLRKQGIS 366 (622)
T ss_pred HH---H-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHhcCCC
Confidence 32 2 45666666677777766667777777766554433333333333 2367888999999999998876664
Q ss_pred hhhhhhchhhhH---HHHh----hhHHHHHHHHHhhhhhhhhhhhHHHhhhhhc------------------cchhhhHH
Q 005569 357 LQNANACFQTSQ---EQLN----EMDNFIESLKESLYGAESRAESAEEKVTQLT------------------DTNLELSE 411 (690)
Q Consensus 357 L~~a~AS~ea~~---eqis----dMEnvIedLKekv~kAESRAe~AE~kc~~Lt------------------eTN~ELne 411 (690)
....+--+.+-. ..+. .-+.+-..+++.-..|+.++++.|.+..++. +.-.+.|=
T Consensus 367 ~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~ 446 (622)
T COG5185 367 TEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINI 446 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeecc
Confidence 433332211111 1122 3345666777778889999999998877653 22244555
Q ss_pred HhhhhccCCCCCcchhhhHHHHHhhHHHHHH-HhHhhhhhhHHhhhh-HHHHHHhHHHHHHHHhhhhhhhcccccccccc
Q 005569 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQ-QAKVSSEASQEQQSM-LYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (690)
Q Consensus 412 EL~fLk~~~~~~s~kv~~LEkqLrEsd~QLq-hAkAS~eAs~EqQ~M-Lysti~DME~lIeDLKsKvsKAEsraesaE~k 489 (690)
|-.|=++.|. +.++.-++..|+.. +|+. |+ .+.-++ |--.|-..+++|..|-+-.-+-|.|.-.|-++
T Consensus 447 E~~~~~~sg~--~~~I~~~i~eln~~-i~~~~~~-------e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~ 516 (622)
T COG5185 447 EQLFPKGSGI--NESIKKSILELNDE-IQERIKT-------EENKSITLEEDIKNLKHDINELTQILEKLELELSEANSK 516 (622)
T ss_pred ccCCccccCc--hHhHHHHHHHHhHH-HHHHHHH-------HhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888874 67888888888876 4432 22 123344 77888999999999999999999999999999
Q ss_pred eeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHh---hhhhhhhhhhhHHHHH-HHHHHHHHHHHHHHHHhhh
Q 005569 490 CIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE---KAASAKEVNHRTKLMM-EMVMQLATQRELIQKQVYS 559 (690)
Q Consensus 490 CilLSetN~ELneELsFLR~R~e~LE~sL~~An~~---K~stAKDIg~rtK~i~-dlV~qLA~ERERL~~Qi~s 559 (690)
|-++-++|- +|+.-.|.-++-||+-|++-|=. ++.-|..--..|.+-- .+.--+-.+|+.||+||.-
T Consensus 517 ~~~~ke~~e---~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~ 587 (622)
T COG5185 517 FELSKEENE---RELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIH 587 (622)
T ss_pred HHHHHHhhH---HHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999885 57788899999999999887633 3333333323333322 3444567899999999754
No 51
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.70 E-value=14 Score=45.77 Aligned_cols=169 Identities=24% Similarity=0.315 Sum_probs=98.8
Q ss_pred HHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhh
Q 005569 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (690)
Q Consensus 306 eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv 385 (690)
.|+.+=++.++||. .+.. ...|+.+.+-|+..||.+++-+..++.+.+-+.+..+-++.-+++.|..+.-.+
T Consensus 656 ~L~~~k~rl~eel~-------ei~~-~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i 727 (1141)
T KOG0018|consen 656 QLKEKKERLLEELK-------EIQK-RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEI 727 (1141)
T ss_pred HHHHHHHHHHHHHH-------HHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchH
Confidence 34555555555554 2222 234889999999999999999999999999888777666666666665554444
Q ss_pred hhhhhhhhhHHHhhhhhccchhhhHHHh--hhhccCCC------------CCcchhhhHHHHHhhHHHHHHHhHhhhhhh
Q 005569 386 YGAESRAESAEEKVTQLTDTNLELSEEI--NFLKGNND------------SNTKKVGILENQLRDLEIQLQQAKVSSEAS 451 (690)
Q Consensus 386 ~kAESRAe~AE~kc~~LteTN~ELneEL--~fLk~~~~------------~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs 451 (690)
+.-+-+.++-|.--..|-+-==++.+.+ +|.+.-|. ..++|.-.+|+|.--+..||+--+- .-.
T Consensus 728 ~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~ 805 (1141)
T KOG0018|consen 728 SEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ--KDT 805 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--ccH
Confidence 4433333333333322221111111110 11111111 0134555566666666666655544 344
Q ss_pred HHhhhhHHHHHHhHHHHHHHHhhhhhhhccccc
Q 005569 452 QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTE 484 (690)
Q Consensus 452 ~EqQ~MLysti~DME~lIeDLKsKvsKAEsrae 484 (690)
+..=-++..++.|.+.=|++||...--|+.-..
T Consensus 806 ~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~ 838 (1141)
T KOG0018|consen 806 QRRVERWERSVEDLEKEIEGLKKDEEAAEKIIA 838 (1141)
T ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHh
Confidence 555567888999999999999987666654443
No 52
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.20 E-value=9.8 Score=47.54 Aligned_cols=249 Identities=20% Similarity=0.231 Sum_probs=118.4
Q ss_pred HHHHhhhhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHHHHhhhhccch-hHHHhhhcHHhhcccceEEEeec
Q 005569 220 LEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENS-AEVLMGISKEMLGRFQIVQFNLN 298 (690)
Q Consensus 220 LEkSlA~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNA-sEvL~GiSKeL~grlqi~QF~Ln 298 (690)
|||+=|.-=-.++...+.+.+.++++-=|--.--...-+||.|+.|-+-++-++-. -+-|+|-=+|-+.+|..+--=|+
T Consensus 1456 ~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~ 1535 (1758)
T KOG0994|consen 1456 LEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILS 1535 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44444444445555566666666666555333334456788888888888776532 34577777788877765544443
Q ss_pred ---ccccchhHHhhhHHHHH--------------HHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhh
Q 005569 299 ---GSLQRESELKSKLGDFI--------------EQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNAN 361 (690)
Q Consensus 299 ---gs~~RE~eLkSKLe~~~--------------~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~ 361 (690)
|-+.|=..|.|.-+..- +-|..-+.+..+.+. +++.-...+ ++-++.=-+.++..
T Consensus 1536 ~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~-------ai~~a~~~~-~~a~~~l~kv~~~t 1607 (1758)
T KOG0994|consen 1536 RTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQD-------AIQGADRDI-RLAQQLLAKVQEET 1607 (1758)
T ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHH-HHHHHHHHHHHHHH
Confidence 34444444433322211 111111111111111 010000000 00000001122222
Q ss_pred hchhh----hHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhH
Q 005569 362 ACFQT----SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDL 437 (690)
Q Consensus 362 AS~ea----~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEs 437 (690)
+++|+ .-+++++++..++.||-++.+----|.+||.-.---...-..-.+.++-|-... ...-.+||++...+
T Consensus 1608 ~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~---~~~~~l~~~r~~g~ 1684 (1758)
T KOG0994|consen 1608 AAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYY---ELVDRLLEKRMEGS 1684 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcc
Confidence 22222 235688888888888887655333333333222222222222223333333322 23445666666555
Q ss_pred HHHHHHhHhhhhhhHHhhh-hHHHHHHhHHHHHHHHhhhhhhhccccc
Q 005569 438 EIQLQQAKVSSEASQEQQS-MLYSAIWDMETLIEDLKSKVSKAESKTE 484 (690)
Q Consensus 438 d~QLqhAkAS~eAs~EqQ~-MLysti~DME~lIeDLKsKvsKAEsrae 484 (690)
+.|++-++--.+.=. +||.|. +|=..|+||..+|..-|-+.+
T Consensus 1685 ----~~ar~rAe~L~~eA~~Ll~~a~-~kl~~l~dLe~~y~~~~~~L~ 1727 (1758)
T KOG0994|consen 1685 ----QAARERAEQLRTEAEKLLGQAN-EKLDRLKDLELEYLRNEQALE 1727 (1758)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHH
Confidence 455555554444333 444444 555678899888877666554
No 53
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.19 E-value=22 Score=44.68 Aligned_cols=170 Identities=22% Similarity=0.299 Sum_probs=89.5
Q ss_pred HhhhHHHHHHHHhhhhHHHHH-hhhc---Cch----hhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHH
Q 005569 307 LKSKLGDFIEQLKAKDMVLQK-LEST---KNS----EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFI 378 (690)
Q Consensus 307 LkSKLe~~~~ql~~k~~~l~K-le~~---~~s----E~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvI 378 (690)
+-.+|+.-+++++..+..+++ -... .-. -+.-..++.+.|+.++++.+-+|..++.-.+... ..++- +
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~---~~~~k-v 541 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAA---DSLEK-V 541 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhh-H
Confidence 334566666666666666664 1100 011 1112234444444444444444444432221111 01122 2
Q ss_pred HHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhh---
Q 005569 379 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQ--- 455 (690)
Q Consensus 379 edLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ--- 455 (690)
..++-.+--++--+...=++|..|..++-+++..+..++..+....+|...||.....+..-.-.-.+.+++..+++
T Consensus 542 ~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~ 621 (1317)
T KOG0612|consen 542 NSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEI 621 (1317)
T ss_pred HHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333333334456888888888888888888776555678888888876666555555566666666665
Q ss_pred ----hhHHHHHHhHHHHHHHHhhhhhhhc
Q 005569 456 ----SMLYSAIWDMETLIEDLKSKVSKAE 480 (690)
Q Consensus 456 ----~MLysti~DME~lIeDLKsKvsKAE 480 (690)
.+|...|.+.++=++.++--..|++
T Consensus 622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 622 SEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 4556666666655555444444443
No 54
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.81 E-value=30 Score=42.19 Aligned_cols=193 Identities=21% Similarity=0.274 Sum_probs=116.0
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHh----hhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchh
Q 005569 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN----EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (690)
Q Consensus 332 ~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqis----dMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ 407 (690)
..+|..+|++-++-++.+||+.++.|++..+-.......++ |.-.+-++|+. ||+.||+-|+
T Consensus 118 lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~n--------------k~~~lt~~~~ 183 (1265)
T KOG0976|consen 118 LEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHD--------------KNEELNEFNM 183 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhh--------------hhhHHhHHHH
Confidence 34677899999999999999999999998887665544443 55555566654 6888888887
Q ss_pred hhHH---HhhhhccCCCCCcchhhhHHHHHhhHH--------------------HHHHHhHhhhhhhHHhhhhHHHHHHh
Q 005569 408 ELSE---EINFLKGNNDSNTKKVGILENQLRDLE--------------------IQLQQAKVSSEASQEQQSMLYSAIWD 464 (690)
Q Consensus 408 ELne---EL~fLk~~~~~~s~kv~~LEkqLrEsd--------------------~QLqhAkAS~eAs~EqQ~MLysti~D 464 (690)
+++- |.+.++-+- -.|+.-+-.-+.+-| -||---+--.++-.--=+|+.--.-|
T Consensus 184 q~~tkl~e~~~en~~l---e~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~ 260 (1265)
T KOG0976|consen 184 EFQTKLAEANREKKAL---EEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMD 260 (1265)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHH
Confidence 7763 333333221 111111111111100 11111111111111111222222222
Q ss_pred HHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHH
Q 005569 465 METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVM 544 (690)
Q Consensus 465 ME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~ 544 (690)
.+-.-+. .|++--=|---|.-|..|+|-.--||.-+-.-|+.-.+...+.-.||.--||++---||
T Consensus 261 lq~sak~--------------ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enm 326 (1265)
T KOG0976|consen 261 LQASAKE--------------IEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENM 326 (1265)
T ss_pred HHHHHHH--------------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 2222222 22222223335778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005569 545 QLATQRELIQK 555 (690)
Q Consensus 545 qLA~ERERL~~ 555 (690)
+|..+.--|+.
T Consensus 327 kltrqkadirc 337 (1265)
T KOG0976|consen 327 KLTRQKADIRC 337 (1265)
T ss_pred HHHHHHHHHHH
Confidence 98877655443
No 55
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.23 E-value=38 Score=38.53 Aligned_cols=202 Identities=18% Similarity=0.216 Sum_probs=123.7
Q ss_pred cccchhHHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHH
Q 005569 300 SLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIE 379 (690)
Q Consensus 300 s~~RE~eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIe 379 (690)
.-+....+++.|......|+.-...|++.. .|...|+..|.+|...|.... ......++........|.
T Consensus 272 ~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k----~E~~~L~~~vesL~~ELe~~K-------~el~~lke~e~~a~~~v~ 340 (522)
T PF05701_consen 272 AKEKSSELQSSLASAKKELEEAKKELEKAK----EEASSLRASVESLRSELEKEK-------EELERLKEREKEASSEVS 340 (522)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHh
Confidence 445667778888888888888888888765 578899999999988765444 444444455556666678
Q ss_pred HHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHh----h
Q 005569 380 SLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ----Q 455 (690)
Q Consensus 380 dLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~Eq----Q 455 (690)
+|+..+.++.++.+.+......--+.-.+|...|..+.+...-.-..+...-..++....+++++++.+...+.+ +
T Consensus 341 ~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ 420 (522)
T PF05701_consen 341 SLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAAL 420 (522)
T ss_pred hHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877666665444444555555555555332212244555556777777778888877766554 2
Q ss_pred hhHHHHHHhHHHHHHHHhhhhhhhccccccc--ccceeeecccchhhhhhhhhhhhHHHHHHHhH
Q 005569 456 SMLYSAIWDMETLIEDLKSKVSKAESKTESV--EEQCIVLSEDNFELKNKQSFMRDKIKILESSL 518 (690)
Q Consensus 456 ~MLysti~DME~lIeDLKsKvsKAEsraesa--E~kCilLSetN~ELneELsFLR~R~e~LE~sL 518 (690)
.++-.+=-.....+..+|-=.....+.-.+. ....|-|| -+|-.-|.+|+..-|..-
T Consensus 421 ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls------~eEy~~L~~ka~e~ee~a 479 (522)
T PF05701_consen 421 KEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLS------LEEYESLSKKAEEAEELA 479 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeec------HHHHHHHHHHHHHHHHHH
Confidence 2222222333344555554222222211111 33444444 267778999988777643
No 56
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.09 E-value=65 Score=40.96 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHHhhhhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHHHHh
Q 005569 218 RMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGR 268 (690)
Q Consensus 218 rMLEkSlA~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~~R 268 (690)
|.=|-+.+++=|.++ +.+-...-.+|+.+||+.+ +=+..+-|+|-
T Consensus 1334 R~e~l~~k~k~~f~~-~~~n~~~L~el~~~l~sL~-----L~~lne~vCG~ 1378 (1758)
T KOG0994|consen 1334 RVEELLVKQKGDFGG-LAENSRLLVELRAELSSLP-----LTPLNEQVCGA 1378 (1758)
T ss_pred HHHHHHHHhhhcccc-cccccHHHHHHHHHhcCCC-----CchhhHHhcCC
Confidence 555555666777777 6666667788999999887 55666667664
No 57
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=89.80 E-value=4.6 Score=40.76 Aligned_cols=109 Identities=26% Similarity=0.359 Sum_probs=78.2
Q ss_pred HhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHH-
Q 005569 318 LKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE- 396 (690)
Q Consensus 318 l~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE- 396 (690)
|.+|...++.|+. |+.....-|...-..|..++.....|.......+.++..|..+++..+..+..++..++.|-
T Consensus 62 L~GKq~iveqLe~----ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~ 137 (188)
T PF05335_consen 62 LAGKQQIVEQLEQ----EVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQ 137 (188)
T ss_pred HHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777665 33344445555555666666666666666666678899999999999999999999998764
Q ss_pred ---HhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhh
Q 005569 397 ---EKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSS 448 (690)
Q Consensus 397 ---~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~ 448 (690)
+|..+|... -.||+.|.++|.+...-++..|.++
T Consensus 138 el~eK~qLLeaA------------------k~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 138 ELAEKTQLLEAA------------------KRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444433 3599999999999988888876543
No 58
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.49 E-value=8.6 Score=44.46 Aligned_cols=240 Identities=23% Similarity=0.323 Sum_probs=135.6
Q ss_pred HHhhhhhcchhhhHHHHHhhHHHHHHhhhhccchhHHHhhhcHHhhcccceEEEeecccccch-hHHhhhHHHHHHHHhh
Q 005569 242 EQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE-SELKSKLGDFIEQLKA 320 (690)
Q Consensus 242 EeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL~grlqi~QF~Lngs~~RE-~eLkSKLe~~~~ql~~ 320 (690)
-+|+-+| +.|+|=. |||||+|.. |.-.+++++ |...++ +.+|..-+..+-.+.
T Consensus 45 ~~LNDRL------A~YIekV------R~LEaqN~~---------L~~di~~lr----~~~~~~ts~ik~~ye~El~~ar- 98 (546)
T KOG0977|consen 45 QELNDRL------AVYIEKV------RFLEAQNRK---------LEHDINLLR----GVVGRETSGIKAKYEAELATAR- 98 (546)
T ss_pred HHHHHHH------HHHHHHH------HHHHHHHHH---------HHHHHHHHH----hhccCCCcchhHHhhhhHHHHH-
Confidence 3566666 5555532 999999964 333333332 445556 566666655554322
Q ss_pred hhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhh
Q 005569 321 KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVT 400 (690)
Q Consensus 321 k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~ 400 (690)
++-.....+.-.+..++.-|+.++++..-.+..+.-....-.+++.+-.+.+.++..++.-+-.|...-|....
T Consensus 99 ------~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~ 172 (546)
T KOG0977|consen 99 ------KLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELK 172 (546)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 11111234444566666666677776666666665555556666777777777777777777777777777777
Q ss_pred hhccchhhhHHHhhhhccCCCCC-------cchhhhHHHHHh------hHHHHHHHhHhh----hhhhHHhhhhHHHHHH
Q 005569 401 QLTDTNLELSEEINFLKGNNDSN-------TKKVGILENQLR------DLEIQLQQAKVS----SEASQEQQSMLYSAIW 463 (690)
Q Consensus 401 ~LteTN~ELneEL~fLk~~~~~~-------s~kv~~LEkqLr------Esd~QLqhAkAS----~eAs~EqQ~MLysti~ 463 (690)
-|-.-|..|-.+|.-+|++-+.- .-++..|...|. +.++-=.|+++. .+..-+=++=|-.+|.
T Consensus 173 ~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~ 252 (546)
T KOG0977|consen 173 RLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIR 252 (546)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHH
Confidence 77777777777777776532100 112222222221 112222233333 3445566777888888
Q ss_pred hHHH----H-------H-HHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhH
Q 005569 464 DMET----L-------I-EDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (690)
Q Consensus 464 DME~----l-------I-eDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~ 520 (690)
||-. . | .-.+.|+.++.+.++.+ | -+.--.-|||.-+|.++..|=+-|..
T Consensus 253 eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~---~----~~~~~~rEEl~~~R~~i~~Lr~klse 314 (546)
T KOG0977|consen 253 EIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERA---N----VEQNYAREELRRIRSRISGLRAKLSE 314 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccc---c----chhHHHHHHHHHHHhcccchhhhhcc
Confidence 8732 1 1 22567888888766554 1 12233557777776666666555443
No 59
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.48 E-value=33 Score=36.76 Aligned_cols=164 Identities=22% Similarity=0.298 Sum_probs=114.8
Q ss_pred hhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHH-HHhHHHHH
Q 005569 391 RAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSA-IWDMETLI 469 (690)
Q Consensus 391 RAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLyst-i~DME~lI 469 (690)
+.+.--..+..+-+-|..|.+-|..|-.+- .-|=.-+++.++--+.++|-+.|-.+...+.-.+-..- ..--+.++
T Consensus 122 ~~ee~~~~~~k~~~eN~~L~eKlK~l~eQy---e~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l 198 (309)
T PF09728_consen 122 QMEEQSERNIKLREENEELREKLKSLIEQY---ELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILL 198 (309)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444455668888999999999888875 33555666666655555554443332222111111100 01112234
Q ss_pred HHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHH-------
Q 005569 470 EDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEM------- 542 (690)
Q Consensus 470 eDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dl------- 542 (690)
++.. +|--++++-.+|...|+.-=.+.+.++.+|...|+.=.+-=++|..-+|-|+.|
T Consensus 199 ~~~~---------------~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~ 263 (309)
T PF09728_consen 199 EEAA---------------QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTW 263 (309)
T ss_pred HHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 888899999999999999999999999999999999888888998888888765
Q ss_pred ----------HHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 005569 543 ----------VMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (690)
Q Consensus 543 ----------V~qLA~ERERL~~Qi~sL~keNkiLv~K~k 572 (690)
+..+|-||..+.+++..+.++..-|=.=|+
T Consensus 264 k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcR 303 (309)
T PF09728_consen 264 KSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCR 303 (309)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999888777755554
No 60
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.92 E-value=19 Score=44.18 Aligned_cols=129 Identities=27% Similarity=0.324 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhh
Q 005569 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 451 (690)
Q Consensus 372 sdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs 451 (690)
..||..|.|||+.|.- |--||+=+++||+-|++|.+-+..|+. -++-||- |++.+-||+..--
T Consensus 427 d~aEs~iadlkEQVDA----AlGAE~MV~qLtdknlnlEekVklLee-------tv~dlEa-lee~~EQL~Esn~----- 489 (1243)
T KOG0971|consen 427 DQAESTIADLKEQVDA----ALGAEEMVEQLTDKNLNLEEKVKLLEE-------TVGDLEA-LEEMNEQLQESNR----- 489 (1243)
T ss_pred HHHHHHHHHHHHHHHH----hhcHHHHHHHHHhhccCHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHH-----
Confidence 3455555555555543 457999999999999999888877776 3444442 3344444432110
Q ss_pred HHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeee-------cccchhhhhhhhhhhhHHHHHHHhHhHHhHh
Q 005569 452 QEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVL-------SEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (690)
Q Consensus 452 ~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilL-------SetN~ELneELsFLR~R~e~LE~sL~~An~~ 524 (690)
| .--|.-.=|+-+|+-+--++.|.+-|-+--.=+ -+-=.-||.-|.-++.+..+.|+-+|+---+
T Consensus 490 -e-------le~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseees~q~~s~ 561 (1243)
T KOG0971|consen 490 -E-------LELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEESQQPPSV 561 (1243)
T ss_pred -H-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcCCCCC
Confidence 0 111222223333333333333332222111000 1112357888888888999999888875533
Q ss_pred h
Q 005569 525 K 525 (690)
Q Consensus 525 K 525 (690)
+
T Consensus 562 ~ 562 (1243)
T KOG0971|consen 562 D 562 (1243)
T ss_pred c
Confidence 3
No 61
>PRK09039 hypothetical protein; Validated
Probab=86.46 E-value=12 Score=40.28 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=15.0
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhHHH
Q 005569 371 LNEMDNFIESLKESLYGAESRAESAEE 397 (690)
Q Consensus 371 isdMEnvIedLKekv~kAESRAe~AE~ 397 (690)
..+++..|..|+..+.-|+.+-...+.
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666555554444444
No 62
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=86.35 E-value=38 Score=36.98 Aligned_cols=210 Identities=23% Similarity=0.335 Sum_probs=122.8
Q ss_pred hHHHHHhhHHHHHHhhhhccchhHHHhhhcHHhhcccceEEEeecccccchhH----HhhhHHHHHHHHhhhhH-HHHHh
Q 005569 254 VAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESE----LKSKLGDFIEQLKAKDM-VLQKL 328 (690)
Q Consensus 254 e~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL~grlqi~QF~Lngs~~RE~e----LkSKLe~~~~ql~~k~~-~l~Kl 328 (690)
-.-.+|=+++..+.|.-.|-+-.+- -|++--+|--.++|+.| |+.|+.--+-.|..+.. ..++|
T Consensus 85 ~kerLEtEiES~rsRLaaAi~d~dq-----------sq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqL 153 (305)
T PF14915_consen 85 NKERLETEIESYRSRLAAAIQDHDQ-----------SQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQL 153 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH-----------HHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHH
Confidence 3445666777778887776554332 23333344556778777 44554444444443222 22333
Q ss_pred hhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhh
Q 005569 329 ESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 408 (690)
Q Consensus 329 e~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~E 408 (690)
.. ..+-+.+|..+..-.=-.|||--+-|+++.--....|-|+.+||++--.=.++|.+.-.+-++.|.+..+|---|+=
T Consensus 154 sk-aesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~L 232 (305)
T PF14915_consen 154 SK-AESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENML 232 (305)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22333334333333333444444444444433333456799999999999999999999999999999999888887
Q ss_pred hHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhccccccccc
Q 005569 409 LSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEE 488 (690)
Q Consensus 409 LneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~ 488 (690)
|...|.-... |+..-|+-+-....|.+ |.=.|+ -|++ |.
T Consensus 233 LrQQLddA~~-------K~~~kek~ViniQ~~f~----------------------------d~~~~L-~ae~-----ek 271 (305)
T PF14915_consen 233 LRQQLDDAHN-------KADNKEKTVINIQDQFQ----------------------------DIVKKL-QAES-----EK 271 (305)
T ss_pred HHHHHHHHHH-------HHHHHHHHHhhHHHHHH----------------------------HHHHHH-HHHH-----HH
Confidence 7666655444 33333333322221121 111111 1222 45
Q ss_pred ceeeecccchhhhhhhhhhhhHHHHHHH
Q 005569 489 QCIVLSEDNFELKNKQSFMRDKIKILES 516 (690)
Q Consensus 489 kCilLSetN~ELneELsFLR~R~e~LE~ 516 (690)
++.+|=+-|-||-.|-+.||-|+--.|+
T Consensus 272 q~lllEErNKeL~ne~n~LkEr~~qyEk 299 (305)
T PF14915_consen 272 QVLLLEERNKELINECNHLKERLYQYEK 299 (305)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6677888899999999999998876664
No 63
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.29 E-value=85 Score=40.53 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=19.6
Q ss_pred cccccccccee--eecccchhhhhhhhhhhhHHHHHHHhHhHH
Q 005569 481 SKTESVEEQCI--VLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (690)
Q Consensus 481 sraesaE~kCi--lLSetN~ELneELsFLR~R~e~LE~sL~~A 521 (690)
.+.+.|+.-|= =||+.|++ ..+.=+..+++.++..|...
T Consensus 421 ~~Le~~~~~~~~~~~SdEeLe--~~LenF~aklee~e~qL~el 461 (1486)
T PRK04863 421 QALERAKQLCGLPDLTADNAE--DWLEEFQAKEQEATEELLSL 461 (1486)
T ss_pred HHHHHHHHHhCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 44566777774 45555533 44444444444444444433
No 64
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.30 E-value=49 Score=34.14 Aligned_cols=49 Identities=22% Similarity=0.248 Sum_probs=36.4
Q ss_pred HHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhcc
Q 005569 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (690)
Q Consensus 370 qisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~ 418 (690)
+..++...|.++...+..+....+.--..|..|.+.++-|.-|+..-|.
T Consensus 256 ~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 256 EREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455666666666666666666677777789999999999999986653
No 65
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=85.23 E-value=1.1e+02 Score=38.31 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=31.9
Q ss_pred hhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHHHHhhhhccchhHHH
Q 005569 231 EKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVL 279 (690)
Q Consensus 231 EKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNAsEvL 279 (690)
=.|-.|.+.+.+.....+ |.-.|+| .-+-.-+||..-|-+.+.
T Consensus 158 StKk~dl~~vv~~f~I~v---eNP~~~l---sQD~aR~FL~~~~p~dkY 200 (1074)
T KOG0250|consen 158 STKKEDLDTVVDHFNIQV---ENPMFVL---SQDAARSFLANSNPKDKY 200 (1074)
T ss_pred cccHHHHHHHHHHhCcCC---CCcchhh---cHHHHHHHHhcCChHHHH
Confidence 356678888998888766 8888888 445567888887777654
No 66
>PRK11637 AmiB activator; Provisional
Probab=84.77 E-value=66 Score=35.24 Aligned_cols=18 Identities=6% Similarity=0.182 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 005569 543 VMQLATQRELIQKQVYSL 560 (690)
Q Consensus 543 V~qLA~ERERL~~Qi~sL 560 (690)
+.+|..+..+|..+|..+
T Consensus 235 l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 235 LSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544
No 67
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.05 E-value=36 Score=42.25 Aligned_cols=164 Identities=23% Similarity=0.311 Sum_probs=107.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhh----
Q 005569 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLEL---- 409 (690)
Q Consensus 334 sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~EL---- 409 (690)
.++.+|.+++.++-.-.-....-+.+.+.+.+.-.+.+..|..=|++++.++.+-++|....+.=...|-+.=.++
T Consensus 294 ~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~ 373 (1174)
T KOG0933|consen 294 GEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLL 373 (1174)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 4556777777777666666666677777776666677888999999999998888888777555444444433333
Q ss_pred ---HHHhhhhccCCCCCcch-hhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccc
Q 005569 410 ---SEEINFLKGNNDSNTKK-VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTES 485 (690)
Q Consensus 410 ---neEL~fLk~~~~~~s~k-v~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraes 485 (690)
.+.+..|.-. .++.+. ..+||.||+...+++-.|....+++.= -|||+=..||-+-.++.+.
T Consensus 374 e~~e~~~eslt~G-~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~----------k~e~~~~elk~~e~e~~t~--- 439 (1174)
T KOG0933|consen 374 EKAEELVESLTAG-LSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKL----------KLEHLRKELKLREGELATA--- 439 (1174)
T ss_pred HHHHHHHHHHhcc-cccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhhhHhhhh---
Confidence 3455666553 333445 889999999999988887766554432 3677766666654444432
Q ss_pred cccceeeecccchhhhhhhhhhhhHHHHHHHhHh
Q 005569 486 VEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 519 (690)
Q Consensus 486 aE~kCilLSetN~ELneELsFLR~R~e~LE~sL~ 519 (690)
|.-+....+++.-+.--++.|+..|.
T Consensus 440 --------~~~~~~~~~~ld~~q~eve~l~~~l~ 465 (1174)
T KOG0933|consen 440 --------SAEYVKDIEELDALQNEVEKLKKRLQ 465 (1174)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334455666666666666666654
No 68
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.66 E-value=31 Score=36.34 Aligned_cols=128 Identities=20% Similarity=0.349 Sum_probs=88.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchh--hhHHH
Q 005569 335 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL--ELSEE 412 (690)
Q Consensus 335 E~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~--ELneE 412 (690)
+...|..+..+-.+-|+.-...+.-++....+.+..+-+|++-|-.+...+.++..|-..+|.|-.--|..+. .|+.|
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E 97 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIE 97 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3445555666666667777777777777777788888899999999999999999999999998855555442 35555
Q ss_pred hhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhh
Q 005569 413 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKV 476 (690)
Q Consensus 413 L~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKv 476 (690)
+..++. |...||.+|.++ ---.+..+.++.-|...+.++|.-+.+.+..+
T Consensus 98 ~~~ak~-------r~~~le~el~~l-------~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~ 147 (239)
T COG1579 98 IQIAKE-------RINSLEDELAEL-------MEEIEKLEKEIEDLKERLERLEKNLAEAEARL 147 (239)
T ss_pred HHHHHH-------HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554 555666666554 34445566777777777777777776665543
No 69
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.34 E-value=97 Score=36.55 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhh
Q 005569 338 TMKEKVKSLEEQLKESEIRLQNA 360 (690)
Q Consensus 338 tL~eKV~sLEkqLrESe~QL~~a 360 (690)
.....|+.||.+|.+...|+...
T Consensus 47 ~~~~~V~eLE~sL~eLk~q~~~~ 69 (617)
T PF15070_consen 47 HDISRVQELERSLSELKNQMAEP 69 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 34477889999998876665543
No 70
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=83.08 E-value=0.37 Score=55.61 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhh-------hhhhhhhHHHHH
Q 005569 442 QQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKN-------KQSFMRDKIKIL 514 (690)
Q Consensus 442 qhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELne-------ELsFLR~R~e~L 514 (690)
.+-++..|.-..+-+.+.+-+.-.+.-|-+|+.|......|++..+..|.-|.+.+..|.+ |...||.+++.|
T Consensus 345 ~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL 424 (713)
T PF05622_consen 345 LETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRETNEEL 424 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444455666666677788888888888888888888888888888776554 555666666666
Q ss_pred HHh
Q 005569 515 ESS 517 (690)
Q Consensus 515 E~s 517 (690)
+.+
T Consensus 425 ~~~ 427 (713)
T PF05622_consen 425 ECS 427 (713)
T ss_dssp ---
T ss_pred hhc
Confidence 533
No 71
>PRK03918 chromosome segregation protein; Provisional
Probab=82.69 E-value=1.1e+02 Score=36.05 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=8.9
Q ss_pred HhhhhhccchhhhHHHhhhhc
Q 005569 397 EKVTQLTDTNLELSEEINFLK 417 (690)
Q Consensus 397 ~kc~~LteTN~ELneEL~fLk 417 (690)
.+...+...--+|.+.+.-|+
T Consensus 412 ~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 412 ARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444
No 72
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.66 E-value=5.9 Score=40.26 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhh
Q 005569 336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 415 (690)
Q Consensus 336 ~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~f 415 (690)
-.++++++..||+|+.+...+|.+...+.. +...+|.+-+...+.. ...|.+.|.+|.+||.-
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~--------------~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSV--------------INGLKEENQKLKNQLIV 150 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Confidence 346778888888888888888887765522 2233333333332222 22277778888888877
Q ss_pred hccCCCCCcchhhhHHHHHhhH
Q 005569 416 LKGNNDSNTKKVGILENQLRDL 437 (690)
Q Consensus 416 Lk~~~~~~s~kv~~LEkqLrEs 437 (690)
++. +++.|+.++...
T Consensus 151 ~~~-------~~~~l~~~~~~~ 165 (206)
T PRK10884 151 AQK-------KVDAANLQLDDK 165 (206)
T ss_pred HHH-------HHHHHHHHHHHH
Confidence 766 566666655444
No 73
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.50 E-value=66 Score=40.16 Aligned_cols=181 Identities=17% Similarity=0.211 Sum_probs=90.4
Q ss_pred HHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhh
Q 005569 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 457 (690)
Q Consensus 378 IedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~M 457 (690)
++.|+..+...++..++-+.+|..|...+-.|-..+....+.-......+...-+.+++.|+++-.--.+-++-.-.-++
T Consensus 824 ~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~ 903 (1174)
T KOG0933|consen 824 HEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSD 903 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhc
Confidence 46666666667777777777776665555444444433333211111122222233444444443333332222222222
Q ss_pred HHHHHHhHHHHHHHHhhhhhhhcccccccccceeeec-----------------ccchhhhhhhhhhhhHHHHHHHhHhH
Q 005569 458 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLS-----------------EDNFELKNKQSFMRDKIKILESSLNR 520 (690)
Q Consensus 458 Lysti~DME~lIeDLKsKvsKAEsraesaE~kCilLS-----------------etN~ELneELsFLR~R~e~LE~sL~~ 520 (690)
....+--.||=+.-+++--.-+..+++..+.+.--|+ .+=-+-.++|.-|-.+.+.||..++-
T Consensus 904 ~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~ 983 (1174)
T KOG0933|consen 904 GELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNP 983 (1174)
T ss_pred ccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCH
Confidence 2333333334444444444445555666666666655 12245578899999999999998887
Q ss_pred HhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005569 521 ANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLT 561 (690)
Q Consensus 521 An~~K~stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~sL~ 561 (690)
.+-.=..++.+=-...|..+.. +..-+..|++-|..|-
T Consensus 984 ~~m~mle~~E~~~~~lk~k~~~---Ie~Dk~kI~ktI~~lD 1021 (1174)
T KOG0933|consen 984 KNMDMLERAEEKEAALKTKKEI---IEKDKSKIKKTIEKLD 1021 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHH
Confidence 7655555554433222222222 2334445555565553
No 74
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=81.41 E-value=64 Score=32.58 Aligned_cols=143 Identities=16% Similarity=0.191 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhh-----hhhhHHHhhhhhccchhhhHHH
Q 005569 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES-----RAESAEEKVTQLTDTNLELSEE 412 (690)
Q Consensus 338 tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAES-----RAe~AE~kc~~LteTN~ELneE 412 (690)
.|.-.+..++..|.+....+-.+.|+.-....++.+.+.-+.++..+...|=. =|..|=.+-....++-..|..+
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~ 107 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERE 107 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557777777777777766666666555566777777777777776666533 2333433444555555566666
Q ss_pred hhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhh-------hhHHhhh---hHHH-HHHhHHHHHHHHhhhhhhhcc
Q 005569 413 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE-------ASQEQQS---MLYS-AIWDMETLIEDLKSKVSKAES 481 (690)
Q Consensus 413 L~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~e-------As~EqQ~---MLys-ti~DME~lIeDLKsKvsKAEs 481 (690)
+.-++. -+.-|+.+|+++..+++.+++--. +.+=++. ++.+ ...+--..++.++.||..-|.
T Consensus 108 ~~~~~~-------~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea 180 (219)
T TIGR02977 108 LAAVEE-------TLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEA 180 (219)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHH
Confidence 666655 344555555555555555444322 2222211 2211 223444556667888888888
Q ss_pred cccccc
Q 005569 482 KTESVE 487 (690)
Q Consensus 482 raesaE 487 (690)
+++...
T Consensus 181 ~aea~~ 186 (219)
T TIGR02977 181 QAESYD 186 (219)
T ss_pred HHHHhh
Confidence 777654
No 75
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=80.92 E-value=30 Score=35.82 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=95.1
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhh------------hhhhhHHHhh
Q 005569 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAE------------SRAESAEEKV 399 (690)
Q Consensus 332 ~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAE------------SRAe~AE~kc 399 (690)
.+|+ ..|.-.+...+..|.+....+-.+.+..-..+.++.++...++++..+.-.|= .|.++.|..|
T Consensus 23 EDp~-~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~ 101 (225)
T COG1842 23 EDPE-KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLA 101 (225)
T ss_pred cCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3455 45555555555555555555555555555555677888888888877665443 4566777788
Q ss_pred hhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhH-----HHHHHhHHHHHHHHhh
Q 005569 400 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSML-----YSAIWDMETLIEDLKS 474 (690)
Q Consensus 400 ~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~ML-----ysti~DME~lIeDLKs 474 (690)
..+.....++.+-+.-||. .+.-||.++.+...+.+..+|-.-+-.=++.|= .++ .+=....+.++.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~-------~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~sa~~~fer~e~ 173 (225)
T COG1842 102 KALEAELQQAEEQVEKLKK-------QLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SSAMAAFERMEE 173 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhHHHHHHHHH
Confidence 8888888888877777777 778888888888888777766544433333332 222 244455677777
Q ss_pred hhhhhcccccccc
Q 005569 475 KVSKAESKTESVE 487 (690)
Q Consensus 475 KvsKAEsraesaE 487 (690)
|+...|.|++.+.
T Consensus 174 kiee~ea~a~~~~ 186 (225)
T COG1842 174 KIEEREARAEAAA 186 (225)
T ss_pred HHHHHHHHHHHhH
Confidence 8877777776554
No 76
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.66 E-value=1.8e+02 Score=36.69 Aligned_cols=96 Identities=20% Similarity=0.209 Sum_probs=63.9
Q ss_pred hhhhhcccccccccceeeeccc----------chhhhhhhhhhhhHHHHHHHhH------hHHhHhhhhhhhhhhhhHHH
Q 005569 475 KVSKAESKTESVEEQCIVLSED----------NFELKNKQSFMRDKIKILESSL------NRANIEKAASAKEVNHRTKL 538 (690)
Q Consensus 475 KvsKAEsraesaE~kCilLSet----------N~ELneELsFLR~R~e~LE~sL------~~An~~K~stAKDIg~rtK~ 538 (690)
+|-..+.+++.-.-.|++-.++ =.++.+|++-||....-.|+++ |.+-..+--+.++-+..--.
T Consensus 834 ~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~~~~k~~ 913 (1074)
T KOG0250|consen 834 KVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKEDELKVT 913 (1074)
T ss_pred HHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4455566666666566555555 5999999999999999999885 45555555555555543333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 005569 539 MMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (690)
Q Consensus 539 i~dlV~qLA~ERERL~~Qi~sL~keNkiLv~K~k~ 573 (690)
|..+++- =++-|+.....+.+.++.+...++.
T Consensus 914 ~~e~L~~---l~~~l~~R~~~~qk~r~~~~~~~~~ 945 (1074)
T KOG0250|consen 914 LDELLKA---LGEALESREQKYQKFRKLLTRRATE 945 (1074)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 3566777777788888888777764
No 77
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.57 E-value=79 Score=32.66 Aligned_cols=141 Identities=24% Similarity=0.296 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhh-------hhhhhhhhhHHHhhhhhccchhhhH
Q 005569 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL-------YGAESRAESAEEKVTQLTDTNLELS 410 (690)
Q Consensus 338 tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv-------~kAESRAe~AE~kc~~LteTN~ELn 410 (690)
.|.+....|.+|++-..--++-|++ ..+++.||......|-+.- ...|.-.+.-.++.--|-+-|..|.
T Consensus 40 ~L~~e~~~L~~q~~s~Qqal~~aK~----l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~ 115 (193)
T PF14662_consen 40 QLAEEITDLRKQLKSLQQALQKAKA----LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLL 115 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 6778888888888866422333333 3445555555554444433 2233344445566666777777888
Q ss_pred HHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhccc
Q 005569 411 EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESK 482 (690)
Q Consensus 411 eEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsr 482 (690)
.|..-|+.+..-=..+-.-|-+|+++.+.=+-|-.|.+.-.--+..=|..+|--.-.++++|+.++|+-|..
T Consensus 116 ~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeq 187 (193)
T PF14662_consen 116 AERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQ 187 (193)
T ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777775311122445567777777666666666665566677889999999999999999999887643
No 78
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.27 E-value=42 Score=33.26 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=53.9
Q ss_pred HHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhccccccccccee----eecccchhhhhhhhhhhhHHHHHH
Q 005569 440 QLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI----VLSEDNFELKNKQSFMRDKIKILE 515 (690)
Q Consensus 440 QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCi----lLSetN~ELneELsFLR~R~e~LE 515 (690)
++...+...+....+-..|+.+|..|++=|.++|.|..-.-.|...|.-+=- +=+-+..+....+.-++.|+..+|
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~e 178 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEME 178 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHH
Confidence 3344444444445555678888888888888888886655555444433221 111124566677888999999998
Q ss_pred HhHhHHhHhh
Q 005569 516 SSLNRANIEK 525 (690)
Q Consensus 516 ~sL~~An~~K 525 (690)
..-.-..+.-
T Consensus 179 a~a~a~~el~ 188 (221)
T PF04012_consen 179 ARAEASAELA 188 (221)
T ss_pred HHHHHHHHhc
Confidence 8766666555
No 79
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.20 E-value=1.4e+02 Score=34.65 Aligned_cols=78 Identities=15% Similarity=0.255 Sum_probs=38.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHh
Q 005569 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 413 (690)
Q Consensus 334 sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL 413 (690)
.++..+.++...+|.+|.+.+-+|..+..- +++..+..-++.+..++.+++........++..+...-.++..++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~-----e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSE-----EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666554321 233333344444444444444444444444444444444444444
Q ss_pred hhh
Q 005569 414 NFL 416 (690)
Q Consensus 414 ~fL 416 (690)
.-+
T Consensus 466 ~~~ 468 (650)
T TIGR03185 466 DEK 468 (650)
T ss_pred HHH
Confidence 333
No 80
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.96 E-value=1.8e+02 Score=35.87 Aligned_cols=262 Identities=23% Similarity=0.238 Sum_probs=131.5
Q ss_pred hhhhHHHHHhhHHHHHHhhhhccch-hH---HHhhhcHHhhcccceEEEeecccccchhHHhhhHHHHHHHHhhhhHHHH
Q 005569 251 TEQVAFRMEEAAEVVWGRFLEAENS-AE---VLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ 326 (690)
Q Consensus 251 ~Eqe~~~mEE~ae~v~~R~~eAeNA-sE---vL~GiSKeL~grlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~ 326 (690)
.--+..||.+.+..-|=--+-++|- +| ++-|.=-=++|- ..+||.+-+- --|+.+.+.|++--+||.-..
T Consensus 513 p~AV~dFLs~~s~iq~Ltt~l~~n~~~Ese~viqgl~A~lLgl--~~~fn~~s~p----~~r~~~~~lItkrvGke~f~s 586 (970)
T KOG0946|consen 513 PDAVKDFLSESSIIQYLTTQLMDNQGSESEQVIQGLCAFLLGL--CYYFNDNSSP----VSRSDVYQLITKRVGKENFIS 586 (970)
T ss_pred cHHHHHHHccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH--HHHcCcccCc----ccHHHHHHHHHHHHhHHHHHH
Confidence 4567889999988888777888886 66 333332222221 3678888765 367888999999999999999
Q ss_pred HhhhcC------------------ch-hhhhH--HHHHHHHHHHHHHh-------hhhhhhhhhchhhhHHHHhhhHHHH
Q 005569 327 KLESTK------------------NS-EVLTM--KEKVKSLEEQLKES-------EIRLQNANACFQTSQEQLNEMDNFI 378 (690)
Q Consensus 327 Kle~~~------------------~s-E~~tL--~eKV~sLEkqLrES-------e~QL~~a~AS~ea~~eqisdMEnvI 378 (690)
||..-+ ++ .++.. .+-+..||.-++-. +-|-+.|.- ......+++
T Consensus 587 rL~~lsr~e~ysra~~kqq~~l~~~~k~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k-------~~e~l~~~~ 659 (970)
T KOG0946|consen 587 RLQRLSRHELYSRASMKQQPQLKSNTKLALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEK-------YHEELDDIQ 659 (970)
T ss_pred HHHHhhHhHHHHHHhhccCccCCCCchhhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHH-------HHHHHHHHH
Confidence 988541 11 11211 12234444333211 111111111 123444445
Q ss_pred HHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHh-hHHHHH---HHhHhhhhhhHH-
Q 005569 379 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLR-DLEIQL---QQAKVSSEASQE- 453 (690)
Q Consensus 379 edLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLr-Esd~QL---qhAkAS~eAs~E- 453 (690)
-++|+-+-.--...++.-.+-+-|+--|-+|++|+.-+-+.-....+-+..|+.||. -++.|- |-|.|+----.|
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel 739 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEEL 739 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHH
Confidence 555555544444444444556666666777777666554432111233344444443 111111 112222221222
Q ss_pred ------------hhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHH
Q 005569 454 ------------QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (690)
Q Consensus 454 ------------qQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~A 521 (690)
+|..|-.+..--...|+-.|.+..-|+....+.-.. .=..+-=.||+.+|+-...|+..+..-+.+-
T Consensus 740 ~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~-~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~ 818 (970)
T KOG0946|consen 740 NAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDN-LGDQEQVIELLKNLSEESTRLQELQSELTQL 818 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhh-hhhHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 334443443333444555555544444332221100 0011223466666788888888887776665
Q ss_pred hHhhh
Q 005569 522 NIEKA 526 (690)
Q Consensus 522 n~~K~ 526 (690)
++.+.
T Consensus 819 keq~~ 823 (970)
T KOG0946|consen 819 KEQIQ 823 (970)
T ss_pred HHHHH
Confidence 55443
No 81
>PRK11281 hypothetical protein; Provisional
Probab=77.63 E-value=46 Score=41.63 Aligned_cols=51 Identities=25% Similarity=0.313 Sum_probs=23.6
Q ss_pred HHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHH
Q 005569 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 396 (690)
Q Consensus 346 LEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE 396 (690)
||.+|.+...+|+.+.+...+..+++.+..+--+.--...+.|-.|.+...
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~ 176 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR 176 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 666666555555555544444444444444433333333344444443333
No 82
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=77.53 E-value=1.8e+02 Score=35.47 Aligned_cols=187 Identities=22% Similarity=0.293 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhc--------------hhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccch
Q 005569 341 EKVKSLEEQLKESEIRLQNANAC--------------FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 406 (690)
Q Consensus 341 eKV~sLEkqLrESe~QL~~a~AS--------------~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN 406 (690)
.|+.+||+-|++.+..+..-+.. .++..++.--|.+=++.++-.+++..+-....-++|.-+++.+
T Consensus 238 ~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~ 317 (775)
T PF10174_consen 238 TKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQD 317 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 57888888888776654433221 1112233446777788888888888888888888999999999
Q ss_pred hhhHHHhhhhccCCCCCcc-------hhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhh
Q 005569 407 LELSEEINFLKGNNDSNTK-------KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKA 479 (690)
Q Consensus 407 ~ELneEL~fLk~~~~~~s~-------kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKA 479 (690)
.+...=+.-||.+--.... =|+.|--.|.+.+.|+..+-++.++.++-=+-+-+=|.||-..++--..||+..
T Consensus 318 ~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 318 SDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888764210011 256677888999999999999999999999999999999999999999999999
Q ss_pred cccccccccceeeecccchhhhhhhhhhh-----hHHHHHHHhHhHHhHhhhhhhh
Q 005569 480 ESKTESVEEQCIVLSEDNFELKNKQSFMR-----DKIKILESSLNRANIEKAASAK 530 (690)
Q Consensus 480 EsraesaE~kCilLSetN~ELneELsFLR-----~R~e~LE~sL~~An~~K~stAK 530 (690)
..+.|+.++. |.+-.-.|.++-..|+ .+.+.+=..|.+|.-.|-...+
T Consensus 398 q~kie~Lee~---l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e 450 (775)
T PF10174_consen 398 QKKIENLEEQ---LREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQE 450 (775)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999998864 3444444444444444 2222333445555554444333
No 83
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.61 E-value=1.3e+02 Score=35.11 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=83.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhh-hHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhcc--------
Q 005569 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD-------- 404 (690)
Q Consensus 334 sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea-~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~Lte-------- 404 (690)
.++..++.++...|.+|.+...+-.-....... ..++++++..-+...+.+...|++|.+..+..-..-..
T Consensus 201 ~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~ 280 (754)
T TIGR01005 201 PEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVL 280 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhh
Confidence 444455555555555555544431111111111 22456666666666666666666666665544321100
Q ss_pred ---------------chhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhH-HhhhhHHHHHHhHHHH
Q 005569 405 ---------------TNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ-EQQSMLYSAIWDMETL 468 (690)
Q Consensus 405 ---------------TN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~-EqQ~MLysti~DME~l 468 (690)
.=.++..++.-|+..-..+.-++-.|..|+.+++.|++......-++. -+...+......++.-
T Consensus 281 ~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~ 360 (754)
T TIGR01005 281 SSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSD 360 (754)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112222222222111244666777777777766654433332222 1223333334444555
Q ss_pred HHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhh
Q 005569 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEK 525 (690)
Q Consensus 469 IeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K 525 (690)
+.+++.++...=.. +-+ =.+|.-|....|.-.+.|=+.+.++....
T Consensus 361 l~~~~~~~~~~~~~----~~e-------~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 361 VNQLKAASAQAGEQ----QVD-------LDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHhCcHh----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555554332111 100 12566677777777666655555555444
No 84
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.59 E-value=41 Score=33.31 Aligned_cols=147 Identities=20% Similarity=0.289 Sum_probs=91.4
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhh------------hhhhhhHHHhhh
Q 005569 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA------------ESRAESAEEKVT 400 (690)
Q Consensus 333 ~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kA------------ESRAe~AE~kc~ 400 (690)
+|+ ..|...+..++++|.+....+..+.+...-.+.++.+-+.-|.++-.+.-.| =.|....+.+..
T Consensus 23 DP~-~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~ 101 (221)
T PF04012_consen 23 DPE-KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE 101 (221)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 455 5666677777777777777766666665555566666666666666555444 122233334444
Q ss_pred hhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHH-----HHhHHHHHHHHhhh
Q 005569 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSA-----IWDMETLIEDLKSK 475 (690)
Q Consensus 401 ~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLyst-----i~DME~lIeDLKsK 475 (690)
.|...=.++...+.-|+. .+.-|+.++.+...+....++...+.+-++.| -.+ +.|-..-++.+..|
T Consensus 102 ~l~~~~~~~~~~~~~l~~-------~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~-~~~~~~~~~~~a~~~~er~e~k 173 (221)
T PF04012_consen 102 RLEQQLDQAEAQVEKLKE-------QLEELEAKLEELKSKREELKARENAAKAQKKV-NEALASFSVSSAMDSFERMEEK 173 (221)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCccchHHHHHHHHHH
Confidence 444444444444555554 56677777777777777777666655444443 333 45667788889999
Q ss_pred hhhhccccccccc
Q 005569 476 VSKAESKTESVEE 488 (690)
Q Consensus 476 vsKAEsraesaE~ 488 (690)
+...|.+++...+
T Consensus 174 i~~~ea~a~a~~e 186 (221)
T PF04012_consen 174 IEEMEARAEASAE 186 (221)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887654
No 85
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=76.30 E-value=14 Score=43.67 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=90.1
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHH
Q 005569 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (690)
Q Consensus 333 ~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneE 412 (690)
-+|..+++++..-||.--.-.-+|..---.-++|..++|.|+|-+|+.-..++.-+|--.|.-=-.-+-|.--.++|=-|
T Consensus 103 ~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmae 182 (861)
T KOG1899|consen 103 CPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAE 182 (861)
T ss_pred CCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHH
Confidence 37888899999988876444444544444557888899999999999999999888876665544556677778889999
Q ss_pred hhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHH
Q 005569 413 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYS 460 (690)
Q Consensus 413 L~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLys 460 (690)
++.||=+--...+--.--|+++|.++--+||..++--.-++||..=|-
T Consensus 183 vSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye 230 (861)
T KOG1899|consen 183 VSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYE 230 (861)
T ss_pred HHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987310001112234567888888888888665555666665553
No 86
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=76.14 E-value=1.8e+02 Score=34.77 Aligned_cols=266 Identities=20% Similarity=0.246 Sum_probs=138.1
Q ss_pred HHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCccchhhcccCCcccccccccccchHHHhHHHHHHHH
Q 005569 143 MEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEK 222 (690)
Q Consensus 143 m~~~~~KL~d~~~sLkQ~qe~i~eIk~Qsa~Fqr~~~~~~~~~~~~~~~~~e~g~~~n~~~~~~mqt~eqqRniLrMLEk 222 (690)
+.+++..|++.--.|.+.|+.--.=|+..+.=-|-+ +-+++|..|..-+=|=|
T Consensus 17 le~LQreLd~~~~~l~~~Q~~S~~srk~L~e~tref---------------------------kk~~pe~k~k~~~~llK 69 (629)
T KOG0963|consen 17 LERLQRELDAEATEIAQRQDESEISRKRLAEETREF---------------------------KKNTPEDKLKMVNPLLK 69 (629)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHH---------------------------hccCcHHHHHHHHHHHH
Confidence 345677777777778887776665565555444443 11456777887888888
Q ss_pred HhhhhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHHHHhhhhccchhHHHhhhcHHhhcccceEEEeeccccc
Q 005569 223 SLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQ 302 (690)
Q Consensus 223 SlA~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL~grlqi~QF~Lngs~~ 302 (690)
+--+|+|.=-|- +-|-|=+-.+||++..+|..--=+|-|+ -++.++++- .+-.
T Consensus 70 ~yQ~EiD~LtkR--------------------sk~aE~afl~vye~L~eaPDP~pll~sa-~~~l~k~~~------~~~e 122 (629)
T KOG0963|consen 70 SYQSEIDNLTKR--------------------SKFAEAAFLDVYEKLIEAPDPVPLLASA-AELLNKQQK------ASEE 122 (629)
T ss_pred HHHHHHHHHHHH--------------------HHhhHHHHHHHHHHHhhCCCCchHHHHH-HHHhhhhhh------hhhh
Confidence 888888864333 3344445568999999998754444432 334444432 2222
Q ss_pred chhHHhhhHHH---HHHHHhhhhHHHHHhhhc---------------------------------CchhhhhHHHHHHHH
Q 005569 303 RESELKSKLGD---FIEQLKAKDMVLQKLEST---------------------------------KNSEVLTMKEKVKSL 346 (690)
Q Consensus 303 RE~eLkSKLe~---~~~ql~~k~~~l~Kle~~---------------------------------~~sE~~tL~eKV~sL 346 (690)
++ +|+..|+. .+.-+++++..+.++... ...+--++++++..|
T Consensus 123 ~~-~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~l 201 (629)
T KOG0963|consen 123 NE-ELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEEL 201 (629)
T ss_pred HH-HHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22322222 222233333333333321 011222333333333
Q ss_pred HHHHHHhhhhhhhhhhchhh----hHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCC
Q 005569 347 EEQLKESEIRLQNANACFQT----SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS 422 (690)
Q Consensus 347 EkqLrESe~QL~~a~AS~ea----~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~ 422 (690)
|+......+-+.....+... ++++...--.-|.=+=.++..|-+|+..+|..|-.|.+.=..-|.....=++..
T Consensus 202 e~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~-- 279 (629)
T KOG0963|consen 202 EKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDD-- 279 (629)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc--
Confidence 33333332221111111110 111222222223344456778999999999999988877666666655545433
Q ss_pred CcchhhhHHHHHhhHHHHH----HHhHhhhhhhHHhhhhHHHHHHhHHHHH
Q 005569 423 NTKKVGILENQLRDLEIQL----QQAKVSSEASQEQQSMLYSAIWDMETLI 469 (690)
Q Consensus 423 ~s~kv~~LEkqLrEsd~QL----qhAkAS~eAs~EqQ~MLysti~DME~lI 469 (690)
.+.+++...+.-....|| +|-++|. ++--.-...+|++.|.-.
T Consensus 280 -i~~~~~~L~~kd~~i~~L~~di~~~~~S~---~~e~e~~~~qI~~le~~l 326 (629)
T KOG0963|consen 280 -IDALGSVLNQKDSEIAQLSNDIERLEASL---VEEREKHKAQISALEKEL 326 (629)
T ss_pred -hHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 677777777733333333 4444432 333344566677766543
No 87
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=75.99 E-value=63 Score=39.08 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=22.1
Q ss_pred HHhhhhhhhhhhhhHhhhhHHHhhhhhcchhh
Q 005569 222 KSLARELDLEKKISELNQNEEQLKLKLHHTEQ 253 (690)
Q Consensus 222 kSlA~ElDLEKkL~esr~~eEeLklKlh~~Eq 253 (690)
+++-.-++-.+.+.+.+.|.++++.-+++...
T Consensus 441 qsv~k~v~~q~~~s~i~~ILedI~~al~~~~~ 472 (769)
T PF05911_consen 441 QSVLKLVLEQKEVSKISEILEDIEIALDSINN 472 (769)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcc
Confidence 45556666677777777888888877765543
No 88
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=75.95 E-value=19 Score=38.31 Aligned_cols=29 Identities=17% Similarity=0.053 Sum_probs=18.6
Q ss_pred hhhhHhhHHHHHHHHHHHHHhhHhhhhhh
Q 005569 150 LHDCEGSLKESQEHVSELKMQSAKFQRVL 178 (690)
Q Consensus 150 L~d~~~sLkQ~qe~i~eIk~Qsa~Fqr~~ 178 (690)
|.-++-+-+.+...|++-|.....|+..+
T Consensus 70 Lely~~~c~EL~~~I~egr~~~~~~E~~~ 98 (325)
T PF08317_consen 70 LELYQFSCRELKKYISEGRQIFEEIEEET 98 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666665
No 89
>PRK09039 hypothetical protein; Validated
Probab=75.84 E-value=40 Score=36.50 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=23.8
Q ss_pred hhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHH
Q 005569 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 466 (690)
Q Consensus 426 kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME 466 (690)
.|..|-.|+-.+..||....+..++++++-.-....|.+++
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666665533333333333
No 90
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=75.28 E-value=19 Score=35.10 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=62.6
Q ss_pred hhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHH---HHHHHHHHHHHhhhhhhhhhHHHHHHhhc
Q 005569 503 KQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQ---LATQRELIQKQVYSLTSENKLLVEKLQYS 574 (690)
Q Consensus 503 ELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~q---LA~ERERL~~Qi~sL~keNkiLv~K~k~~ 574 (690)
+-..|.+|+++||.-|......+..-.+|--..-+.|-.|-.+ ++.+|.+|+..+.++.+++..|.+.|++-
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999999988888887777554 67899999999999999999999888853
No 91
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=73.05 E-value=1.1 Score=51.78 Aligned_cols=64 Identities=20% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhH
Q 005569 455 QSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSL 518 (690)
Q Consensus 455 Q~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL 518 (690)
|..|-..=-||..+=+.+|..|-||..-....++||-=-+..-.-|...+.=-..+++.||..+
T Consensus 582 e~~L~~k~~e~~~~eer~k~~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~ 645 (713)
T PF05622_consen 582 EEALQKKEEEMRAMEERYKKYLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKEL 645 (713)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHhHHHHHhHHHHHHHHHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555556766667777778888888888888876411111123455555556777777766
No 92
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=72.64 E-value=36 Score=38.97 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=36.2
Q ss_pred HHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhcc
Q 005569 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 418 (690)
Q Consensus 378 IedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~ 418 (690)
...|+.....+|++-+++|.||++|...=-++.+||.++|.
T Consensus 363 ~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 363 ADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999999999999999885
No 93
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=72.21 E-value=86 Score=36.65 Aligned_cols=154 Identities=16% Similarity=0.210 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhchhhhHHHHh----------------hhHHHHHHHHHhhhhhhhhhhhHHHhh-----
Q 005569 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLN----------------EMDNFIESLKESLYGAESRAESAEEKV----- 399 (690)
Q Consensus 341 eKV~sLEkqLrESe~QL~~a~AS~ea~~eqis----------------dMEnvIedLKekv~kAESRAe~AE~kc----- 399 (690)
.++..|+.||.....++..+.+-.+..+.++. ....+|.+|+.+....+.+....-.+.
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP 316 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHP 316 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCH
Confidence 56666666666666655555555444433322 112567778877777766544333332
Q ss_pred ------hhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhh---hHHHHHHhHHHHHH
Q 005569 400 ------TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS---MLYSAIWDMETLIE 470 (690)
Q Consensus 400 ------~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~---MLysti~DME~lIe 470 (690)
.++.+.+-++..|+..+.+.- ......+..+...++.|++..++-+.....++. -|-....--+.+-+
T Consensus 317 ~v~~l~~qi~~l~~~i~~e~~~~~~~~---~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~ 393 (754)
T TIGR01005 317 RVVAAKSSLADLDAQIRSELQKITKSL---LMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYE 393 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHH
Confidence 223334444455555443321 112222223333333333333333333333333 33333334455667
Q ss_pred HHhhhhhhhcccccccccceeeecccc
Q 005569 471 DLKSKVSKAESKTESVEEQCIVLSEDN 497 (690)
Q Consensus 471 DLKsKvsKAEsraesaE~kCilLSetN 497 (690)
.|-.++..|.-....--....|++.-.
T Consensus 394 ~ll~r~~e~~~~~~~~~~~~~vi~~A~ 420 (754)
T TIGR01005 394 SYLTNYRQAASRQNYVPVDARVASPAS 420 (754)
T ss_pred HHHHHHHHHHHhhcCCCCCcEEeccCc
Confidence 777777777665544555666766443
No 94
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=71.94 E-value=67 Score=38.19 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=91.1
Q ss_pred chhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhh
Q 005569 425 KKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQ 504 (690)
Q Consensus 425 ~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneEL 504 (690)
+....++..+.....+|+|.+++.+.-..+..-.-.+...++. .++ -+...+.+....++.|+..- +++
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~---~~~-~~~~~~~~~~~l~~~~~~~~-------~~i 243 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLAD---SLG-NYADLRRNIKPLEGLESTIK-------KKI 243 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---Hhh-hhhhHHHhhhhhhhhhhHHH-------HHH
Confidence 3667788888888888898888876643332221111211111 111 23344555555566665443 347
Q ss_pred hhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH---HHHHhhcCC
Q 005569 505 SFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL---VEKLQYSGK 576 (690)
Q Consensus 505 sFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~sL~keNkiL---v~K~k~~~~ 576 (690)
.=|+.++..|+..+..++..-...-+++----+.+..++.+|+..++.++.+. .--..||-| ++-+|.+.+
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCce
Confidence 77888888888888888888777777777777777778889999888888887 666667666 444555543
No 95
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=71.47 E-value=1.2e+02 Score=34.40 Aligned_cols=149 Identities=21% Similarity=0.251 Sum_probs=72.5
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhh
Q 005569 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEA 450 (690)
Q Consensus 371 isdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eA 450 (690)
+.+=|.+|..||++...-..-...+-..+. +|..|..+++. -...|+.|+....++++++++....
T Consensus 248 Lq~kEklI~~LK~~~~~~~~~~~~~~~el~-------~l~~E~~~~~e-------e~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 248 LQSKEKLIESLKEGCLEEGFDSSTNSIELE-------ELKQERDHLQE-------EIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred hcCHHHHHHHHHhcccccccccccchhcch-------hhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788899999844431111111101111 23344444444 4556666776666666666654333
Q ss_pred hHHhhhhHHHHHHhHHHHHHHHhhh-----hhhhcc--cccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhH
Q 005569 451 SQEQQSMLYSAIWDMETLIEDLKSK-----VSKAES--KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523 (690)
Q Consensus 451 s~EqQ~MLysti~DME~lIeDLKsK-----vsKAEs--raesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~ 523 (690)
++.++..-...++..+.-+..+ ...-|= --+..-.+=.-++--..+-..|+.+||..+-. .
T Consensus 314 ---~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~---------~ 381 (511)
T PF09787_consen 314 ---EQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSA---------R 381 (511)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---------H
Confidence 3334444444555444444443 000000 00000000001111122335677777776654 2
Q ss_pred hhhhhhhhhhhhHHHHHHHHHH
Q 005569 524 EKAASAKEVNHRTKLMMEMVMQ 545 (690)
Q Consensus 524 ~K~stAKDIg~rtK~i~dlV~q 545 (690)
.+.+.-.|+..|.+-.++.+.|
T Consensus 382 ~~~s~~~elE~rl~~lt~~Li~ 403 (511)
T PF09787_consen 382 ASSSSWNELESRLTQLTESLIQ 403 (511)
T ss_pred hccCCcHhHHHHHhhccHHHHH
Confidence 2566778999999998877764
No 96
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=71.34 E-value=1.3e+02 Score=31.36 Aligned_cols=157 Identities=24% Similarity=0.346 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCC
Q 005569 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (690)
Q Consensus 342 KV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~ 421 (690)
-+.+|-.||||+...+- -=.+=|..||..+-.+-+..++.+..+..|.++.
T Consensus 11 EIsLLKqQLke~q~E~~--------------~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~--------------- 61 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVN--------------QKDSEIVSLRAQLRELRAELRNKESQIQELQDSL--------------- 61 (202)
T ss_pred hHHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---------------
Confidence 47788899998765432 2223366777766655555555555554443322
Q ss_pred CCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhh
Q 005569 422 SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (690)
Q Consensus 422 ~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELn 501 (690)
..|--.|| ..+-++ +..+.-+ ..|.-.+-..|.-|-+|+.-.+.+ -.....|+.++++
T Consensus 62 --~~K~~ELE--~ce~EL--qr~~~Ea-------~lLrekl~~le~El~~Lr~~l~~~----~~~~~~~~~l~~~----- 119 (202)
T PF06818_consen 62 --RTKQLELE--VCENEL--QRKKNEA-------ELLREKLGQLEAELAELREELACA----GRLKRQCQLLSES----- 119 (202)
T ss_pred --HHhhHhHH--HhHHHH--HHHhCHH-------HHhhhhhhhhHHHHHHHHHHHHhh----ccchhhhcccccc-----
Confidence 11222222 323322 2222222 345555666777777777777666 2233455555511
Q ss_pred hhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 005569 502 NKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKL 566 (690)
Q Consensus 502 eELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~sL~keNki 566 (690)
+.|.-..-+.+.+++.=..-+.-|-..|+.||.+...|...+-.+=++
T Consensus 120 -----------------deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~ 167 (202)
T PF06818_consen 120 -----------------DEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRT 167 (202)
T ss_pred -----------------chhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 111111112344566555667777788888888888888777655444
No 97
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=71.29 E-value=13 Score=43.32 Aligned_cols=58 Identities=28% Similarity=0.306 Sum_probs=27.3
Q ss_pred hhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccc
Q 005569 428 GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTES 485 (690)
Q Consensus 428 ~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraes 485 (690)
..++..+.-..-++..+..+.....|+-+-|...|.+.+.=++-|..++.-.|.+.+.
T Consensus 478 ~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 478 ETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp ----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555556666667777777777777777666666655544
No 98
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.20 E-value=70 Score=30.90 Aligned_cols=41 Identities=34% Similarity=0.396 Sum_probs=17.0
Q ss_pred HHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhc
Q 005569 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 417 (690)
Q Consensus 377 vIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk 417 (690)
-+.++++.......--...+++...+.+...++.+|+.-|+
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 110 ELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444444444444
No 99
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=70.75 E-value=82 Score=34.06 Aligned_cols=46 Identities=30% Similarity=0.361 Sum_probs=24.1
Q ss_pred HhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHH
Q 005569 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKE 352 (690)
Q Consensus 307 LkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrE 352 (690)
|+.-|...++-|..-+..|.+-....++-+..|++|...|...+..
T Consensus 145 Lk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~ 190 (312)
T smart00787 145 LKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555545444444455555566666666555543
No 100
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=70.28 E-value=92 Score=33.26 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=19.4
Q ss_pred HHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHH
Q 005569 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLK 351 (690)
Q Consensus 306 eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLr 351 (690)
.|+.-|++.++.|..-...|.+.....++-+..+.++-..|++.+.
T Consensus 149 gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~ 194 (325)
T PF08317_consen 149 GLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELE 194 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333333333334444444444444444
No 101
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=69.70 E-value=98 Score=29.05 Aligned_cols=90 Identities=26% Similarity=0.337 Sum_probs=52.3
Q ss_pred HHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhh----hHH
Q 005569 378 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEA----SQE 453 (690)
Q Consensus 378 IedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eA----s~E 453 (690)
+..++..+-.--.++..|+.|.-.==--+.+.-++|.-||. .+..+..++.++....+.|++..++ -.+
T Consensus 26 ~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~-------e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~ 98 (132)
T PF07926_consen 26 LQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLRE-------ELQELQQEINELKAEAESAKAELEESEASWEE 98 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344444444444555555544333334445566666665 3445555555555555555554443 346
Q ss_pred hhhhHHHHHHhHHHHHHHHhh
Q 005569 454 QQSMLYSAIWDMETLIEDLKS 474 (690)
Q Consensus 454 qQ~MLysti~DME~lIeDLKs 474 (690)
+..+|-.-|.+++.=|+||..
T Consensus 99 qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 778888889999988888875
No 102
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.16 E-value=1.5e+02 Score=31.45 Aligned_cols=119 Identities=19% Similarity=0.263 Sum_probs=81.3
Q ss_pred HHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccc--hhhhhhhhhhhhHHHHHHHhH
Q 005569 441 LQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN--FELKNKQSFMRDKIKILESSL 518 (690)
Q Consensus 441 LqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN--~ELneELsFLR~R~e~LE~sL 518 (690)
|..|++--++.-..=--+--++-||++-+-.+.+-+.++..|.+.+|++---.|+.+ -.|+-|+.-+-.|..+||..|
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333333334456777888888888888888888888888774444443 257888888888888888888
Q ss_pred hHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 005569 519 NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (690)
Q Consensus 519 ~~An~~K~stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~s 559 (690)
.+.....-.-.+.|-.--.-+-++...++-.|.++-.-+.-
T Consensus 113 ~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~ 153 (239)
T COG1579 113 AELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE 153 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777777766666777777777777776544433
No 103
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=68.74 E-value=85 Score=35.78 Aligned_cols=189 Identities=16% Similarity=0.152 Sum_probs=101.2
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhh------hHHHhhhhccCCCCCcchhhhHHHHHhhHHHHH
Q 005569 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE------LSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (690)
Q Consensus 368 ~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~E------LneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QL 441 (690)
..++.....-+..++......+.|.+-++.+...|...|.+ |..|.+.|.... | |-..+..+-..|
T Consensus 167 ~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e-----~---i~~~~~~~~~~L 238 (563)
T TIGR00634 167 YQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLE-----K---LRELSQNALAAL 238 (563)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHH-----H---HHHHHHHHHHHH
Confidence 34456666667788888888888999999999999999987 666666665521 1 111111111111
Q ss_pred HHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhh---hhhhhhhHHHHHHHhH
Q 005569 442 QQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKN---KQSFMRDKIKILESSL 518 (690)
Q Consensus 442 qhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELne---ELsFLR~R~e~LE~sL 518 (690)
..-....+.+ --..|++++..++.+ +-.++.... +..++--+-|.|.-.+|.. .++|=-.|++.++..|
T Consensus 239 ~~~~~~~~~~--~~~~l~~~~~~l~~~---~d~~~~~~~---~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL 310 (563)
T TIGR00634 239 RGDVDVQEGS--LLEGLGEAQLALASV---IDGSLRELA---EQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERL 310 (563)
T ss_pred hCCccccccC--HHHHHHHHHHHHHHh---hhHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 0000000000 012333344444333 111222222 2222233344455555554 6667777888888888
Q ss_pred hHHhHhhhhhhhhhhhhHHHHHHHHHHHH------HHHHHHHHHhhhhhhhhhHHHHHHh
Q 005569 519 NRANIEKAASAKEVNHRTKLMMEMVMQLA------TQRELIQKQVYSLTSENKLLVEKLQ 572 (690)
Q Consensus 519 ~~An~~K~stAKDIg~rtK~i~dlV~qLA------~ERERL~~Qi~sL~keNkiLv~K~k 572 (690)
..-+..|-..-.++.--.....++-.+|+ .+.+.|+.++..+.++=.-++.++.
T Consensus 311 ~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls 370 (563)
T TIGR00634 311 AQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALS 370 (563)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888776665555555555555555555 2456666666666555555554444
No 104
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.18 E-value=2.9e+02 Score=33.78 Aligned_cols=79 Identities=23% Similarity=0.305 Sum_probs=54.0
Q ss_pred hHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhh
Q 005569 310 KLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA 388 (690)
Q Consensus 310 KLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kA 388 (690)
.|+..+++++.-...++---......+-+++.+++.+|..|.+...||..++.|..+...|+..|...+++|......+
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~ 671 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDL 671 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3444444444333333322222456677888999999999999999999999999888888888777777665544433
No 105
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.72 E-value=2.3e+02 Score=32.56 Aligned_cols=210 Identities=24% Similarity=0.268 Sum_probs=124.8
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHH
Q 005569 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (690)
Q Consensus 333 ~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneE 412 (690)
-+|+.-|.+..+.|.++|.+---|-+.+.+. .++|.----+.|-+.++|.+- -=+.|++.
T Consensus 172 ~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e-------~n~~k~s~~s~~~k~l~al~l-------------lv~tLee~ 231 (446)
T KOG4438|consen 172 EEEVKQLEENIEELNQSLLKDFNQQMSLLAE-------YNKMKKSSTSEKNKILNALKL-------------LVVTLEEN 231 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHhhHHHHHHHHHHHHH-------------HHHHHHHH
Confidence 3777888888887777777665554444333 112211122222333333221 11346666
Q ss_pred hhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccc---cccccc
Q 005569 413 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKT---ESVEEQ 489 (690)
Q Consensus 413 L~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsra---esaE~k 489 (690)
-+.||++-- +--+-|=.-+.|...-|++-+-.-..-++|+..|--++--|++++.|++.=.-|+.+-- ++.|-.
T Consensus 232 ~~~LktqIV---~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~ 308 (446)
T KOG4438|consen 232 ANCLKTQIV---QSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETK 308 (446)
T ss_pred HHHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 677777632 23334555666777778887777888899999999999999999999998888888776 666665
Q ss_pred eeeecccchhhhh-------hhhhhhhHHHHHHHhHhHHhH---hhhhh-------------------------------
Q 005569 490 CIVLSEDNFELKN-------KQSFMRDKIKILESSLNRANI---EKAAS------------------------------- 528 (690)
Q Consensus 490 CilLSetN~ELne-------ELsFLR~R~e~LE~sL~~An~---~K~st------------------------------- 528 (690)
-..| .+|++|+. |+.|+.- +|++..|-+. .|.++
T Consensus 309 ~v~l-ke~~~Le~q~e~~~~e~~~lk~----~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~md~~~~~~n~V~~kr~ 383 (446)
T KOG4438|consen 309 VVEL-KEILELEDQIELNQLELEKLKM----FENLTKQLNELKKEKESRRQDLENRKTESVKAMMDDNIEKYNVVRQKRN 383 (446)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhc
Confidence 5544 35666654 4444442 2333222222 22222
Q ss_pred hhhhhhhHHHHH----HHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 005569 529 AKEVNHRTKLMM----EMVMQLATQRELIQKQVYSLTSENKLLVEK 570 (690)
Q Consensus 529 AKDIg~rtK~i~----dlV~qLA~ERERL~~Qi~sL~keNkiLv~K 570 (690)
|+++-+.++..+ .+-..+|..|+-+..|++.++-+=..|.-.
T Consensus 384 a~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~H 429 (446)
T KOG4438|consen 384 AKVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMH 429 (446)
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333322 222367889999999999888776555433
No 106
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.44 E-value=65 Score=34.88 Aligned_cols=146 Identities=23% Similarity=0.264 Sum_probs=72.4
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhc--cchhhhH
Q 005569 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT--DTNLELS 410 (690)
Q Consensus 333 ~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~Lt--eTN~ELn 410 (690)
.-+|-+|.+++..||+.+-++.-....-.--.+........+..=+.+||+.|. -|-+-.+.-=..|. .+|-+.+
T Consensus 111 ~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~---~rdeli~khGlVlv~~~~ngd~~ 187 (302)
T PF09738_consen 111 MYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK---QRDELIEKHGLVLVPDATNGDTS 187 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCeeeCCCCCCCccc
Confidence 368889999999999988776655432111112222223334444444444441 11111122222222 2333333
Q ss_pred H----------------HhhhhccCCCCCc-chhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHH-------------
Q 005569 411 E----------------EINFLKGNNDSNT-KKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYS------------- 460 (690)
Q Consensus 411 e----------------EL~fLk~~~~~~s-~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLys------------- 460 (690)
. ....|.+.|+.+= -|+.-|-..=.++.-|+++.|...+..+-....=.+
T Consensus 188 ~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~~~~~~~~~~~~~~~l~~~~~~ 267 (302)
T PF09738_consen 188 DEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQSEGRRQKSSSENGVLGDDEDL 267 (302)
T ss_pred cCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccccccc
Confidence 3 3345666654322 244444444444555666666665543333331111
Q ss_pred ---------HHHhHHHHHHHHhhhhhhhcc
Q 005569 461 ---------AIWDMETLIEDLKSKVSKAES 481 (690)
Q Consensus 461 ---------ti~DME~lIeDLKsKvsKAEs 481 (690)
-=+|---.|-|+|=|..|||-
T Consensus 268 En~d~~~~d~qrdanrqisd~KfKl~KaEQ 297 (302)
T PF09738_consen 268 ENTDLHFIDLQRDANRQISDYKFKLQKAEQ 297 (302)
T ss_pred ccccccHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 112334689999999999985
No 107
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=67.38 E-value=37 Score=34.27 Aligned_cols=105 Identities=21% Similarity=0.248 Sum_probs=70.4
Q ss_pred cceEEEeecccccchhHHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHH
Q 005569 290 FQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE 369 (690)
Q Consensus 290 lqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~e 369 (690)
|.-.=||.-....|=+.|=+--.++..-+..++..=+++.. ...|...+..++..||..+.+..-+.+..+.-.++...
T Consensus 81 LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~-~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ 159 (190)
T PF05266_consen 81 LEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEE-KEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDK 159 (190)
T ss_pred HHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555444444444444444444444444443 23455677788888888888888887777777777888
Q ss_pred HHhhhHHHHHHHHHhhhhhhhhhhhH
Q 005569 370 QLNEMDNFIESLKESLYGAESRAESA 395 (690)
Q Consensus 370 qisdMEnvIedLKekv~kAESRAe~A 395 (690)
+|+.|+.-++.+++.+.++|.+-++.
T Consensus 160 ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 160 EISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999887664
No 108
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=67.31 E-value=2e+02 Score=31.65 Aligned_cols=185 Identities=21% Similarity=0.230 Sum_probs=100.9
Q ss_pred HHhhhHHHHHHHHhhhhHHHHHhhhc-------------------------CchhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 005569 306 ELKSKLGDFIEQLKAKDMVLQKLEST-------------------------KNSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (690)
Q Consensus 306 eLkSKLe~~~~ql~~k~~~l~Kle~~-------------------------~~sE~~tL~eKV~sLEkqLrESe~QL~~a 360 (690)
-|+..+++..+|+.-...+..+|+.. -.|-...........|.|..-+..-+..|
T Consensus 134 lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~~a 213 (384)
T PF03148_consen 134 LLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQRA 213 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHHHH
Confidence 46667777778887777777777743 00112222244455666666666666666
Q ss_pred hhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHH
Q 005569 361 NACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQ 440 (690)
Q Consensus 361 ~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~Q 440 (690)
.....++..--.++.+++...-..+ ..+-..||.-|.. |+...+.-..+++.|
T Consensus 214 ~~e~~~S~~LR~~i~~~l~~~~~dl-------------~~Q~~~vn~al~~--------------Ri~et~~ak~~Le~q 266 (384)
T PF03148_consen 214 EKERQSSAQLREDIDSILEQTANDL-------------RAQADAVNAALRK--------------RIHETQEAKNELEWQ 266 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 5554444443344444444333332 3333344444432 444444444445455
Q ss_pred HHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceee-e--cccchhhhhhhhhhhhHHHHHHHh
Q 005569 441 LQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIV-L--SEDNFELKNKQSFMRDKIKILESS 517 (690)
Q Consensus 441 LqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCil-L--SetN~ELneELsFLR~R~e~LE~s 517 (690)
|.+..... .-+-..|.+++.-|.|-..=..-|+||.+.=-.-.-+ | =.--.-|.+|+..|+.-+..|...
T Consensus 267 l~~~~~ei-------~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~ 339 (384)
T PF03148_consen 267 LKKTLQEI-------AEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEK 339 (384)
T ss_pred HHhHHHHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433222 2233344445555555455556799998764432200 1 112233568999999999999999
Q ss_pred HhHHhHh
Q 005569 518 LNRANIE 524 (690)
Q Consensus 518 L~~An~~ 524 (690)
|++|...
T Consensus 340 L~~a~~~ 346 (384)
T PF03148_consen 340 LDEAEAS 346 (384)
T ss_pred HHHHHHH
Confidence 9988753
No 109
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=66.08 E-value=3.1e+02 Score=33.30 Aligned_cols=24 Identities=29% Similarity=0.298 Sum_probs=18.6
Q ss_pred hHHHHHHhHHHHHHHHhhhhhhhc
Q 005569 457 MLYSAIWDMETLIEDLKSKVSKAE 480 (690)
Q Consensus 457 MLysti~DME~lIeDLKsKvsKAE 480 (690)
++.+...+.+..+++|.+...+..
T Consensus 620 ~~~~~~~e~~~~~~~l~~~~~~l~ 643 (908)
T COG0419 620 ELSEAENELEEAEEELESELEKLN 643 (908)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788888888888777776
No 110
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.06 E-value=2.1e+02 Score=36.25 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=43.8
Q ss_pred hhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHH
Q 005569 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLY 459 (690)
Q Consensus 401 ~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLy 459 (690)
.+.+.|-+|+++|.-. ++|.+.|-.+-.....|+++...+-..+.||=+.|.
T Consensus 262 ~~~~~N~~Ls~~L~~~-------t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 262 AQFKINRELSQALNQQ-------AQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446799999988765 568999999999999999999999999999987765
No 111
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=65.52 E-value=33 Score=32.34 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=40.7
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhh
Q 005569 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399 (690)
Q Consensus 333 ~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc 399 (690)
.++...|...+..|+.++.+++-.+..+.+.--+.+.++......+...|+.+.+..+..+....+|
T Consensus 65 ~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~ 131 (151)
T PF11559_consen 65 RSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQY 131 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666665555555444555566666666666666666666665555555
No 112
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.64 E-value=35 Score=40.60 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=45.3
Q ss_pred HHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHH
Q 005569 442 QQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRA 521 (690)
Q Consensus 442 qhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~A 521 (690)
++++...+..++.+..|..-+.+....=+.|-.++.+-=. .+..+==.||+..-+..+||.=++.++..|-+++.++
T Consensus 582 ~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~---~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 582 QELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ---LLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555554443333333333333222211 2222222477777788889998998888888888887
Q ss_pred hHh
Q 005569 522 NIE 524 (690)
Q Consensus 522 n~~ 524 (690)
+..
T Consensus 659 k~k 661 (717)
T PF10168_consen 659 KKK 661 (717)
T ss_pred HHH
Confidence 544
No 113
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=63.54 E-value=1.4e+02 Score=37.72 Aligned_cols=20 Identities=15% Similarity=0.224 Sum_probs=15.1
Q ss_pred ccchhhhhhhhhhhhHHHHH
Q 005569 495 EDNFELKNKQSFMRDKIKIL 514 (690)
Q Consensus 495 etN~ELneELsFLR~R~e~L 514 (690)
+.|.+|+++|.-.=.|+..|
T Consensus 265 ~~N~~Ls~~L~~~t~~~n~l 284 (1109)
T PRK10929 265 KINRELSQALNQQAQRMDLI 284 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56888888887777776665
No 114
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=63.38 E-value=3.1e+02 Score=32.35 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=70.3
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-hhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhH
Q 005569 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANAC-FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 410 (690)
Q Consensus 332 ~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS-~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELn 410 (690)
+.+=++-+.++|.-++..|+.+-.-+-++..- +-..++.+.+.+++|.+|-+-+-+-|+|.-.|=.+|-.+-++|-+
T Consensus 449 ~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~-- 526 (622)
T COG5185 449 LFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENER-- 526 (622)
T ss_pred CCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--
Confidence 44556678899999988888653333333211 222577899999999999999999999999999999999999864
Q ss_pred HHhhhhccCCCCCcchhhhHHHHHhhHH
Q 005569 411 EEINFLKGNNDSNTKKVGILENQLRDLE 438 (690)
Q Consensus 411 eEL~fLk~~~~~~s~kv~~LEkqLrEsd 438 (690)
|+...|- -.+.||+.|..++
T Consensus 527 -e~~a~~~-------E~eklE~el~~ln 546 (622)
T COG5185 527 -ELVAQRI-------EIEKLEKELNDLN 546 (622)
T ss_pred -HHHHHHH-------HHHHHHHHHHHhh
Confidence 3443333 4566777775553
No 115
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=63.30 E-value=6.4 Score=41.42 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=22.0
Q ss_pred cchhH--HHHHHHHHHHHHHHHHHhcccCCC
Q 005569 662 RNRKH--VFVAVFVALLSVAAIYLFNKKHFF 690 (690)
Q Consensus 662 Ln~Kh--ifmAvlvlL~s~~avyl~~~~~~~ 690 (690)
++|+| .++.++.++++++.+++|.||.+|
T Consensus 292 l~~~~Gy~~~l~~m~~~~~~~~~~frrk~Wl 322 (322)
T COG0598 292 LDWPYGYPIALILMLLLALLLYLYFRRKGWL 322 (322)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 67776 677777777777878888888775
No 116
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.21 E-value=4.4e+02 Score=34.10 Aligned_cols=188 Identities=22% Similarity=0.253 Sum_probs=109.8
Q ss_pred hcccceEEEeecccccchhHHhhhHHHHHHHHhhhhHHHHHhhhc--------------CchhhhhHHHHHHHHHHHHHH
Q 005569 287 LGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--------------KNSEVLTMKEKVKSLEEQLKE 352 (690)
Q Consensus 287 ~grlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~Kle~~--------------~~sE~~tL~eKV~sLEkqLrE 352 (690)
.|||-...=+++-.++-|-+-...+++-+..|......+-+.... .+.++-.+++.+++|+..++.
T Consensus 562 ~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~ 641 (1317)
T KOG0612|consen 562 AGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKA 641 (1317)
T ss_pred HhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 345544444555444444443444444444444443333333311 446677888999999999999
Q ss_pred hhhhhhhhhhchhhhHHHHhhhHH--HHHHHHHhhhhhhhhhhhHHHhhhhh--ccchhhhHHHhhhhccCCCCCcchhh
Q 005569 353 SEIRLQNANACFQTSQEQLNEMDN--FIESLKESLYGAESRAESAEEKVTQL--TDTNLELSEEINFLKGNNDSNTKKVG 428 (690)
Q Consensus 353 Se~QL~~a~AS~ea~~eqisdMEn--vIedLKekv~kAESRAe~AE~kc~~L--teTN~ELneEL~fLk~~~~~~s~kv~ 428 (690)
...+++.+.--..+.++.++++|. +=..+--++.-.+.+.+...+.|..+ +..-.+..+=.+.|.... .=.+
T Consensus 642 ~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~e~~~~e~~~~lseek----~ar~ 717 (1317)
T KOG0612|consen 642 GKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRLRLQDKEAQMKEIESKLSEEK----SARE 717 (1317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc----cHHH
Confidence 999999888866667788888887 43444444444455554444444443 333223333333333322 1234
Q ss_pred hHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccc
Q 005569 429 ILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTES 485 (690)
Q Consensus 429 ~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraes 485 (690)
-+|..+.+..-+++.-++..-++++ ..|+.+..-+.+.+.|.+-+++.+.
T Consensus 718 k~e~~~~~i~~e~e~L~~d~~~~~~-------~~~~l~r~~~~~~~~vl~Lq~~LEq 767 (1317)
T KOG0612|consen 718 KAENLLLEIEAELEYLSNDYKQSQE-------KLNELRRSKDQLITEVLKLQSMLEQ 767 (1317)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcc-------chhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5777777888888888887777773 4566666666666666665555543
No 117
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.12 E-value=3.4e+02 Score=34.44 Aligned_cols=319 Identities=24% Similarity=0.289 Sum_probs=178.5
Q ss_pred hhhHHHHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCC
Q 005569 106 DSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGN 185 (690)
Q Consensus 106 DSEVrELe~~~~tlq~~I~~~~~ki~s~~hl~e~f~~m~~~~~KL~d~~~sLkQ~qe~i~eIk~Qsa~Fqr~~~~~~~~~ 185 (690)
-+|..+|..=++....+|.+.-.+|-.|-. .|.+++....+....-.+..+.+.-|+.|-...+.++.+-.
T Consensus 677 ~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~------~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~--- 747 (1200)
T KOG0964|consen 677 RSELKELQESLDEVRNEIEDIDQKIDQLNN------NMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKG--- 747 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH---
Confidence 367888888888888888888777754443 57888899999999999999999999999888888885521
Q ss_pred CccchhhcccCCcccccccccccchHHHhHHHHHHHHHhhhhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHH
Q 005569 186 NDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV 265 (690)
Q Consensus 186 ~~~~~~~~e~g~~~n~~~~~~mqt~eqqRniLrMLEkSlA~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v 265 (690)
.. + -..++..++.++| .+|+|.-|..||+.+=...+- +-...|...+--.-+....+=+...++
T Consensus 748 --~~--------L--e~i~~~l~~~~~~---~~~~e~el~sel~sqLt~ee~-e~l~kLn~eI~~l~~kl~~~~~er~~~ 811 (1200)
T KOG0964|consen 748 --KE--------L--EEIKTSLHKLESQ---SNYFESELGSELFSQLTPEEL-ERLSKLNKEINKLSVKLRALREERIDI 811 (1200)
T ss_pred --HH--------H--HHHHHHHHHHHHH---HHhHHHHHhHHHHhhcCHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 10 0 0134445555666 468899999999877666552 233344444433333333222222222
Q ss_pred HHhhhhccchhHHHhhhcHHhhcccceEEEeecccccchhHHhhhHHHHHHHHhhhhHHHHHhhhc-CchhhhhHHHHHH
Q 005569 266 WGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST-KNSEVLTMKEKVK 344 (690)
Q Consensus 266 ~~R~~eAeNAsEvL~GiSKeL~grlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~Kle~~-~~sE~~tL~eKV~ 344 (690)
-.|- .. =|++|-+||..-+.+|. .-+..+.-+ ..+|+-+..-+..
T Consensus 812 ~~rk---------------------~~----------le~~l~~kL~~r~~~l~---~ei~~~~d~~~~~el~~~~~el~ 857 (1200)
T KOG0964|consen 812 ETRK---------------------TA----------LEANLNTKLYKRVNELE---QEIGDLNDSSRRSELELEKSELE 857 (1200)
T ss_pred HHHH---------------------HH----------HHHHHHHHHHhhhhHHH---HHhhhcccccchhhhhHHHHHHH
Confidence 2221 10 13444445544444441 112222211 1233333333333
Q ss_pred HHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCc
Q 005569 345 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNT 424 (690)
Q Consensus 345 sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s 424 (690)
+++++ ++.+.......+..|..-..-|.++|.. -
T Consensus 858 ~~~~~-------~e~~~~el~~l~~~i~~~~a~~~~~~~~---------------------------------------l 891 (1200)
T KOG0964|consen 858 SEEKR-------VEAAILELKTLQDSIDKKKAEIKEIKKE---------------------------------------L 891 (1200)
T ss_pred HHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHH---------------------------------------H
Confidence 33333 3333333222222222222222222221 1
Q ss_pred chhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhccccccccc--ceeeecccchhhhh
Q 005569 425 KKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEE--QCIVLSEDNFELKN 502 (690)
Q Consensus 425 ~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~--kCilLSetN~ELne 502 (690)
++++.||+....- ++.+ -..|--+-+++||.. |-| |..|- --=+|.+.+++
T Consensus 892 E~~~~lek~~~~~-~~~d---Ke~Ek~~~rk~~Ll~-----------------Kre---E~~ekIr~lG~Lp~daf~--- 944 (1200)
T KOG0964|consen 892 EKAKNLEKEKKDN-INFD---KELEKLVRRKHMLLK-----------------KRE---ECCEKIRELGVLPEDAFE--- 944 (1200)
T ss_pred HHHHHHHHHHhhh-hhhh---HHHHHHHHHHHHHHH-----------------HHH---HHHHHHHhcCCCchHHHH---
Confidence 3666677766655 3333 456666677788766 111 11000 00145555554
Q ss_pred hhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005569 503 KQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 562 (690)
Q Consensus 503 ELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~sL~k 562 (690)
.|-+-..+.|.+-||+-|+. .|+.+.=+|---|=.+...-.||-|.+...-|-+
T Consensus 945 --ky~~~~~~el~kkL~~~nee----lk~ys~VNKkAldQf~nfseQre~L~~R~eELd~ 998 (1200)
T KOG0964|consen 945 --KYQDKKSKELMKKLHRCNEE----LKGYSNVNKKALDQFVNFSEQRESLKKRQEELDR 998 (1200)
T ss_pred --HhccCCHHHHHHHHHHHHHH----HhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 26777788899999998875 4666666676677777788888888888776643
No 118
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=62.88 E-value=2.1e+02 Score=30.20 Aligned_cols=19 Identities=11% Similarity=0.286 Sum_probs=9.3
Q ss_pred hhhhhhhhhhHHHHHHHhH
Q 005569 500 LKNKQSFMRDKIKILESSL 518 (690)
Q Consensus 500 LneELsFLR~R~e~LE~sL 518 (690)
+..++.-++.++..++..|
T Consensus 251 ~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 251 AQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444
No 119
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=62.84 E-value=87 Score=32.92 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHhhhhhhhcccccccccceeeecccch
Q 005569 462 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNF 498 (690)
Q Consensus 462 i~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ 498 (690)
+.+.+.-|.+++.++..++.+. ++|+|.+.-+=
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l----~~~~i~AP~dG 280 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRL----QRLIIRSPVDG 280 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hhcEEECCCCc
Confidence 3444455555555555444433 35666665543
No 120
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=62.44 E-value=1.1e+02 Score=33.57 Aligned_cols=123 Identities=24% Similarity=0.360 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHH---HHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHH
Q 005569 336 VLTMKEKVKSLEEQL---KESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 412 (690)
Q Consensus 336 ~~tL~eKV~sLEkqL---rESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneE 412 (690)
+-.|++|++.||..- |.=-.+|....++.+.-..++ |..+++.|- .|-.....--.=...-++.|..-.+|
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL--v~dcv~QL~----~An~qia~LseELa~k~Ee~~rQQEE 235 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL--VLDCVKQLS----EANQQIASLSEELARKTEENRRQQEE 235 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH--HHHHHHHhh----hcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 447888888888643 333334444444443332232 333444432 22222222222233345677777888
Q ss_pred hhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhh
Q 005569 413 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSK 478 (690)
Q Consensus 413 L~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsK 478 (690)
+..|.+ ++--|+++++..-+.=+....-..++.+-|+-|-+= +.||+.||.-
T Consensus 236 It~Lls-------qivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE-------L~elqdkY~E 287 (306)
T PF04849_consen 236 ITSLLS-------QIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE-------LQELQDKYAE 287 (306)
T ss_pred HHHHHH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 888877 666777777776665555556666667777666443 5566777643
No 121
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=62.00 E-value=94 Score=30.02 Aligned_cols=12 Identities=42% Similarity=0.473 Sum_probs=6.1
Q ss_pred hhhhHHHHHhhH
Q 005569 426 KVGILENQLRDL 437 (690)
Q Consensus 426 kv~~LEkqLrEs 437 (690)
++..+...+.++
T Consensus 159 ~~~~~~~~~~~~ 170 (191)
T PF04156_consen 159 EVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHH
Confidence 445555555444
No 122
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=61.56 E-value=55 Score=33.10 Aligned_cols=94 Identities=24% Similarity=0.310 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhh
Q 005569 376 NFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQ 455 (690)
Q Consensus 376 nvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ 455 (690)
.+|..||+.|.....+.+..+.-...+..-|-.|.+-|.-++- .+..|.++|+.. +.-|++-.....+.
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~-------e~~eL~k~L~~y----~kdK~~L~~~k~rl 95 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEE-------EVEELRKQLKNY----EKDKQSLQNLKARL 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4689999999988888888888888899999999999988776 788888888765 55555555555555
Q ss_pred hhHHHHHHhHHHHHHHHhhhhhhhc
Q 005569 456 SMLYSAIWDMETLIEDLKSKVSKAE 480 (690)
Q Consensus 456 ~MLysti~DME~lIeDLKsKvsKAE 480 (690)
..+-.-++|.+.=-+.|..++.|-+
T Consensus 96 ~~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 96 KELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555544455555554443
No 123
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=61.22 E-value=2e+02 Score=29.58 Aligned_cols=184 Identities=17% Similarity=0.236 Sum_probs=91.1
Q ss_pred eEEEe-ecccccchhHHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHH-
Q 005569 292 IVQFN-LNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE- 369 (690)
Q Consensus 292 i~QF~-Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~e- 369 (690)
+.-|| +.|.+.+=..|.+.+++-..+|......+..-. +-+..+...+..|+........+..-+.+.++....
T Consensus 6 l~~~n~~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~----~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~ 81 (264)
T PF06008_consen 6 LQSVNALTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQK----QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNN 81 (264)
T ss_pred HhcCcchhhhhhhHHHHHHHHHHHHHHHHHHhccchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466 777777777788888887777775544433221 223344444555555555555554444444333221
Q ss_pred ------H----HhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhH-------HHhhhhccCCCCCcchhhhHHH
Q 005569 370 ------Q----LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS-------EEINFLKGNNDSNTKKVGILEN 432 (690)
Q Consensus 370 ------q----isdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELn-------eEL~fLk~~~~~~s~kv~~LEk 432 (690)
. ..++.+++..+.+-+.++.+=.. ....-.+..|. .=|.-+|++.+ +..-..-|.
T Consensus 82 t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~------~~~~~~~~~l~~~l~ea~~mL~emr~r~f--~~~~~~Ae~ 153 (264)
T PF06008_consen 82 TERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE------NGDQLPSEDLQRALAEAQRMLEEMRKRDF--TPQRQNAED 153 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------ccCCCCHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHH
Confidence 1 22333333333333333332222 11111233333 22445666543 345555666
Q ss_pred HHhhHHHHHHHhHhhhhhhHHhhhh----HHHHHHhHHHHHHHHhhhhhhhcccccccc
Q 005569 433 QLRDLEIQLQQAKVSSEASQEQQSM----LYSAIWDMETLIEDLKSKVSKAESKTESVE 487 (690)
Q Consensus 433 qLrEsd~QLqhAkAS~eAs~EqQ~M----Lysti~DME~lIeDLKsKvsKAEsraesaE 487 (690)
.+++.+.=|...++-..-.+++-.- +...+.|-+.=..||..-+-.|...+--|+
T Consensus 154 El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~ 212 (264)
T PF06008_consen 154 ELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAE 212 (264)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666554333333333 344445555556666666666665555555
No 124
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=61.17 E-value=95 Score=33.57 Aligned_cols=141 Identities=13% Similarity=0.175 Sum_probs=65.7
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhc--hhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHH-------------
Q 005569 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANAC--FQTSQEQLNEMDNFIESLKESLYGAESRAESAEE------------- 397 (690)
Q Consensus 333 ~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS--~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~------------- 397 (690)
+.++..+++++...|.+|.....+-.-.... .+....++.++..=+.........+++|....+.
T Consensus 177 ~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 256 (444)
T TIGR03017 177 VQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIANPII 256 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcChHH
Confidence 4455555566666666555544432111111 1112234555544444444444444444332211
Q ss_pred --hhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHh-hhhHHHHHHhHHHHHHHHhh
Q 005569 398 --KVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ-QSMLYSAIWDMETLIEDLKS 474 (690)
Q Consensus 398 --kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~Eq-Q~MLysti~DME~lIeDLKs 474 (690)
--.+|.+ +..+|.-|+..-....-++-.|..++.+++.++....+....+... -..+.....+.+.-+++++.
T Consensus 257 ~~l~~~l~~----le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 332 (444)
T TIGR03017 257 QNLKTDIAR----AESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKA 332 (444)
T ss_pred HHHHHHHHH----HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333 3344444433311235689999999999988887654444333221 12233344444445555554
Q ss_pred hhh
Q 005569 475 KVS 477 (690)
Q Consensus 475 Kvs 477 (690)
++.
T Consensus 333 ~~~ 335 (444)
T TIGR03017 333 KVL 335 (444)
T ss_pred HHH
Confidence 443
No 125
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=61.16 E-value=1.7e+02 Score=32.29 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=18.5
Q ss_pred hhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhH
Q 005569 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM 465 (690)
Q Consensus 426 kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DM 465 (690)
.+..|+.++..++.|++..+.........|.-+..=-+|.
T Consensus 325 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~ 364 (498)
T TIGR03007 325 EIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDY 364 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3444555555555555555554444444444333333333
No 126
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.05 E-value=2e+02 Score=36.35 Aligned_cols=171 Identities=20% Similarity=0.327 Sum_probs=99.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhh---------------------h
Q 005569 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR---------------------A 392 (690)
Q Consensus 334 sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESR---------------------A 392 (690)
.++-.++..+..++.+|+-.+.++..-.--.-+.+..+...|+-+.+|+.++-++|.| +
T Consensus 697 ~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~ 776 (1141)
T KOG0018|consen 697 LDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQ 776 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHH
Confidence 3444444455555555554444433111111133445566666677777776666654 2
Q ss_pred hhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHH
Q 005569 393 ESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDL 472 (690)
Q Consensus 393 e~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDL 472 (690)
+.-..|-..++.--..|.-.|.|.+.++ +-.||+-+++.+...+.++..-+--.+|.. +--.++.-||. .+
T Consensus 777 ~~~a~k~~ef~~q~~~l~~~l~fe~~~d--~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~----k~i~e~~~~e~--k~- 847 (1141)
T KOG0018|consen 777 QEFAKKRLEFENQKAKLENQLDFEKQKD--TQRRVERWERSVEDLEKEIEGLKKDEEAAE----KIIAEIEELEK--KN- 847 (1141)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhheeccc--HHHHHHHHHHHHHHHHHhHHhhHHHHHHHH----HHHhhHHHHHH--HH-
Confidence 3334455667777777888999999964 468999999999888888776655333322 22223355665 44
Q ss_pred hhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhH
Q 005569 473 KSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 520 (690)
Q Consensus 473 KsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~ 520 (690)
|+|+-|++.-...+...- .-|++++.-|-+-+-++|..+.+
T Consensus 848 k~~~~~~~~e~~e~~k~~-------~~~~~~~tkl~~~i~~~es~ie~ 888 (1141)
T KOG0018|consen 848 KSKFEKKEDEINEVKKIL-------RRLVKELTKLDKEITSIESKIER 888 (1141)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhhhhHHHH
Confidence 777777776655544432 23455555566666666665544
No 127
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=60.82 E-value=2.1e+02 Score=29.63 Aligned_cols=124 Identities=16% Similarity=0.262 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchh-hhHHHhhhhccCC
Q 005569 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL-ELSEEINFLKGNN 420 (690)
Q Consensus 342 KV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~-ELneEL~fLk~~~ 420 (690)
-+..+.++..+++..........++.+.....|..||+.+...|+..-.-.+.. ..+.++++ .+..|-+-+.
T Consensus 10 ~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~----~~~~~~~i~~~~~erdq~~--- 82 (207)
T PF05010_consen 10 AIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQ----KELSEAEIQKLLKERDQAY--- 82 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh----HHhHHHHHHHHHhhHHHHH---
Confidence 344455555555555555555555555566677777777777666533222111 22222211 1222222222
Q ss_pred CCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhh
Q 005569 421 DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKV 476 (690)
Q Consensus 421 ~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKv 476 (690)
.=+.++|+...++-.+.+..|.-++....-=-.|..++.|++.=|.-.-.+|
T Consensus 83 ----~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry 134 (207)
T PF05010_consen 83 ----ADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRY 134 (207)
T ss_pred ----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355666777677677777776666665555566666666666555555554
No 128
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=59.97 E-value=1e+02 Score=28.86 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=44.4
Q ss_pred chhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q 005569 497 NFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 572 (690)
Q Consensus 497 N~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~sL~keNkiLv~K~k 572 (690)
+++.-++|+=||..+..+...+.+....--+.-......-.-...-=..|--|..-+...+..|..-|++|-..+-
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555677777777777777666666554444333333322223333334444555566667778888888876653
No 129
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=58.88 E-value=30 Score=34.18 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=38.8
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhh
Q 005569 368 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 416 (690)
Q Consensus 368 ~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fL 416 (690)
...+.++...|+.|++.+.----....+|.|+..|..-|-+|-+-+=-.
T Consensus 136 ~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 136 EEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888888899999999999999887655433
No 130
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=58.66 E-value=1.6e+02 Score=32.55 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=16.9
Q ss_pred cchhhhHHHHHhhHHHHHHHhHhh
Q 005569 424 TKKVGILENQLRDLEIQLQQAKVS 447 (690)
Q Consensus 424 s~kv~~LEkqLrEsd~QLqhAkAS 447 (690)
.-++-.|.+++..+..++.....+
T Consensus 274 hP~v~~l~~qi~~l~~~l~~~~~~ 297 (498)
T TIGR03007 274 HPDVIATKREIAQLEEQKEEEGSA 297 (498)
T ss_pred ChHHHHHHHHHHHHHHHHHhhccc
Confidence 457888888888887777665443
No 131
>PRK11281 hypothetical protein; Provisional
Probab=57.52 E-value=5.1e+02 Score=33.02 Aligned_cols=54 Identities=30% Similarity=0.259 Sum_probs=43.8
Q ss_pred hhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHH
Q 005569 399 VTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLY 459 (690)
Q Consensus 399 c~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLy 459 (690)
...+.+.|.+|+++|.-+ ++|.+.|-.+-.....|++....+-....||=+.|.
T Consensus 280 i~~~~~~N~~Ls~~L~~~-------t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~ 333 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKA-------TEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLK 333 (1113)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344667799999998765 558999999999999999999999888888876553
No 132
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=57.28 E-value=1.3e+02 Score=30.65 Aligned_cols=69 Identities=23% Similarity=0.377 Sum_probs=37.8
Q ss_pred chhhhhHH-------HHHHHHHHHHHHhhhhhhhhhhchhhhHHHHh--hhHHHHHHHHHhhhhhhhhhhhHHHhhhhh
Q 005569 333 NSEVLTMK-------EKVKSLEEQLKESEIRLQNANACFQTSQEQLN--EMDNFIESLKESLYGAESRAESAEEKVTQL 402 (690)
Q Consensus 333 ~sE~~tL~-------eKV~sLEkqLrESe~QL~~a~AS~ea~~eqis--dMEnvIedLKekv~kAESRAe~AE~kc~~L 402 (690)
+.|+-+|+ ++...+++.+++.+.++...+......+.-.. .+.. .+.|-.+++.++.+++.++.+...|
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~e-ReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAE-REELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666665 44555666666666666665555433222111 2222 3566677777777777766655544
No 133
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=57.17 E-value=2.5e+02 Score=35.06 Aligned_cols=123 Identities=20% Similarity=0.278 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhh--------------hhhhhhhhhHHHhhhhhccchh
Q 005569 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL--------------YGAESRAESAEEKVTQLTDTNL 407 (690)
Q Consensus 342 KV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv--------------~kAESRAe~AE~kc~~LteTN~ 407 (690)
++....-||+-+..|++.|....+...-+...-+|=++.+|+++ ..---.++.++.=-.-..+-|.
T Consensus 390 qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~ 469 (980)
T KOG0980|consen 390 QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENT 469 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44455555555666666655443333222222233333333333 2222233333333334445555
Q ss_pred hhHHHhhhhccCC-------CCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHh
Q 005569 408 ELSEEINFLKGNN-------DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWD 464 (690)
Q Consensus 408 ELneEL~fLk~~~-------~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~D 464 (690)
+|++-|--+...+ .+-.+.+++|+++|.-+.++++.....+.-+-+-++-...-+.|
T Consensus 470 ~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~ 533 (980)
T KOG0980|consen 470 NLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLED 533 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5555554444332 11245778888888888888888888776666666655544444
No 134
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.80 E-value=67 Score=36.83 Aligned_cols=80 Identities=28% Similarity=0.221 Sum_probs=58.9
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHH
Q 005569 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (690)
Q Consensus 332 ~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELne 411 (690)
..-|++.|..++.-||+|+|+.+..-..+.+.-+ +|-.=|.-.|+++ |..-.++-+.|..+|.+.|-+|-.
T Consensus 248 lkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~-------rrhrEil~k~eRe--asle~Enlqmr~qqleeentelRs 318 (502)
T KOG0982|consen 248 LKQENLQLVHRYHMLEEQRREQELRAEESLSEEE-------RRHREILIKKERE--ASLEKENLQMRDQQLEEENTELRS 318 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999986444433322 2222233333332 455667888999999999999999
Q ss_pred HhhhhccCC
Q 005569 412 EINFLKGNN 420 (690)
Q Consensus 412 EL~fLk~~~ 420 (690)
...-||+..
T Consensus 319 ~~arlksl~ 327 (502)
T KOG0982|consen 319 LIARLKSLA 327 (502)
T ss_pred HHHHHHHHH
Confidence 999999964
No 135
>PRK01156 chromosome segregation protein; Provisional
Probab=56.47 E-value=4.2e+02 Score=31.75 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=22.1
Q ss_pred HHHhhhh-hccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHh
Q 005569 395 AEEKVTQ-LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 444 (690)
Q Consensus 395 AE~kc~~-LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhA 444 (690)
++-+|.. +|+-.-++-.++ +..- ..+...+++.+++++-++...
T Consensus 451 ~~~~Cp~c~~~~~~e~~~e~--i~~~----~~~i~~l~~~i~~l~~~~~~l 495 (895)
T PRK01156 451 GQSVCPVCGTTLGEEKSNHI--INHY----NEKKSRLEEKIREIEIEVKDI 495 (895)
T ss_pred cCCCCCCCCCcCChhhHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3444533 333335555555 3321 345666666666666555433
No 136
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=56.41 E-value=1.7e+02 Score=27.25 Aligned_cols=89 Identities=24% Similarity=0.315 Sum_probs=61.7
Q ss_pred HHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhccccccc------ccceee---eccc-----
Q 005569 431 ENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESV------EEQCIV---LSED----- 496 (690)
Q Consensus 431 EkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesa------E~kCil---LSet----- 496 (690)
+.+|.++..|++.-+.-.+..+.+-+.|..++.++..+++.|+. +.+.. ++. -+.|.+ +.++
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~-l~~~~---~~~e~lvplg~~~yv~~~v~~~~kV~v 80 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEE-LKSKG---EGKETLVPIGAGSFVKAKVKDKDKVIV 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccC---CCCeEEEEcCCCcEEEEEecCCCeEEE
Confidence 45777788888999999999999999999999999999988873 21111 111 111111 0011
Q ss_pred ----c----hhhhhhhhhhhhHHHHHHHhHhHHhH
Q 005569 497 ----N----FELKNKQSFMRDKIKILESSLNRANI 523 (690)
Q Consensus 497 ----N----~ELneELsFLR~R~e~LE~sL~~An~ 523 (690)
| ..+.+=+.||..|++.|+.++..-+.
T Consensus 81 ~lG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~ 115 (140)
T PRK03947 81 SLGAGYSAEKDLDEAIEILDKRKEELEKALEKLEE 115 (140)
T ss_pred EcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 16778889999999999988876554
No 137
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=56.38 E-value=5.1e+02 Score=32.71 Aligned_cols=60 Identities=13% Similarity=0.152 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHh
Q 005569 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (690)
Q Consensus 464 DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~ 524 (690)
.++..+.+++....+..++.....-++- =..-+.|+.+++.-+..+++........+.+.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~ 491 (1201)
T PF12128_consen 432 QSQEQLEELQEQREQLKSELAELKQQLK-NPQYTEEEKEQLEQADKRLEQAQEQQNQAQQA 491 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444444443333333322 12235677888888888887776666655443
No 138
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=53.50 E-value=2.2e+02 Score=28.85 Aligned_cols=184 Identities=13% Similarity=0.136 Sum_probs=95.9
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHH-----HHhhhhhhhhhh------------h
Q 005569 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESL-----KESLYGAESRAE------------S 394 (690)
Q Consensus 332 ~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedL-----Kekv~kAESRAe------------~ 394 (690)
+++.|..-..++..||.||+..--++..........-.-+.++...+..| ...+++|=+..- .
T Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~~~q 89 (224)
T cd07623 10 TDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLHGEQ 89 (224)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999988776544433221111111111111111 011222222222 2
Q ss_pred HHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHH-HHhHHHHHHHHh
Q 005569 395 AEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSA-IWDMETLIEDLK 473 (690)
Q Consensus 395 AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLyst-i~DME~lIeDLK 473 (690)
|..-+..|.+|--+--+=+...|.-= ..|...+ .++|+|......-.++-.-|-.+ -.| =|..++
T Consensus 90 a~~d~~~l~e~L~eY~r~i~svk~~f---~~R~~a~--------~~~q~a~~~l~kkr~~~~Kl~~~~~~~---K~~~~~ 155 (224)
T cd07623 90 ADTDFYILAELLKDYIGLIGAIKDVF---HERVKVW--------QNWQNAQQTLTKKREAKAKLELSGRTD---KLDQAQ 155 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhcCChh---HHHHHH
Confidence 33334455555555555555555532 3344433 33344444444333332222111 111 456777
Q ss_pred hhhhhhcccccccccceeeecccchhhhhhhh-hhhhHHHHHHHhHhHHhHhhhhhhhhh
Q 005569 474 SKVSKAESKTESVEEQCIVLSEDNFELKNKQS-FMRDKIKILESSLNRANIEKAASAKEV 532 (690)
Q Consensus 474 sKvsKAEsraesaE~kCilLSetN~ELneELs-FLR~R~e~LE~sL~~An~~K~stAKDI 532 (690)
.-|..||.+.+.|...+--+|++. ..||. |=+.|+..+-+.|..-=+.=+.+++.+
T Consensus 156 ~ev~~~e~~~~~a~~~fe~is~~~---k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~ 212 (224)
T cd07623 156 QEIKEWEAKVDRGQKEFEEISKTI---KKEIERFEKNRVKDFKDIIIKYLESLLNTQQQL 212 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888877777777664 44554 447777777776665555544454444
No 139
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=53.37 E-value=70 Score=33.32 Aligned_cols=123 Identities=21% Similarity=0.280 Sum_probs=70.3
Q ss_pred hhHHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHH---HhhhHHHHHH
Q 005569 304 ESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQ---LNEMDNFIES 380 (690)
Q Consensus 304 E~eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eq---isdMEnvIed 380 (690)
|--||.+||.-|+-|.+....-....+++++ .-+.-|=++|||.+-++....|-.---+.+ =+.|.++--|
T Consensus 26 E~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~------~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~d 99 (205)
T PF12240_consen 26 ERRLRTRLERELESLRAQQRQGNSSGSSSPS------NNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFAMD 99 (205)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899998888877665554444443222 234445567777777766665553333332 2566666555
Q ss_pred HHHhhhhhhhhhhhHHHhhhhhccchhhh--HHHhhhhccCCCCCcchhhhHHHHHhhHHHHHH
Q 005569 381 LKESLYGAESRAESAEEKVTQLTDTNLEL--SEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (690)
Q Consensus 381 LKekv~kAESRAe~AE~kc~~LteTN~EL--neEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLq 442 (690)
--...+.++-++-..+..|-.- |--| +++|-.-+ .|..-+|..++.++.|+.
T Consensus 100 Aaa~aa~~rdttiI~~s~~~s~---~~s~r~~eel~~a~-------~K~qemE~RIK~LhaqI~ 153 (205)
T PF12240_consen 100 AAATAAAQRDTTIINHSPSESY---NSSLREEEELHMAN-------RKCQEMENRIKALHAQIA 153 (205)
T ss_pred HHhhhHHHHHHHHHhcCCCCCC---CccccchHHHHHhh-------hhHHHHHHHHHHHHHHHH
Confidence 4444444444444455554443 2223 55554433 388888888888876664
No 140
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=53.27 E-value=13 Score=38.29 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=0.0
Q ss_pred ccccchhHHHHHH--HHHHHHHHHHHHhcccCCC
Q 005569 659 AGLRNRKHVFVAV--FVALLSVAAIYLFNKKHFF 690 (690)
Q Consensus 659 ag~Ln~KhifmAv--lvlL~s~~avyl~~~~~~~ 690 (690)
|+ ++|+|-|..+ +.++++++.++||.||.+|
T Consensus 286 P~-l~~~~gy~~~l~~m~~i~~~~~~~fkrk~Wl 318 (318)
T TIGR00383 286 PE-LNWKYGYPAVLIVMAVIALGPLIYFRRKGWL 318 (318)
T ss_pred cc-ccchhHHHHHHHHHHHHHHHHHHHHHHcCCC
No 141
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=53.27 E-value=4.6e+02 Score=31.23 Aligned_cols=85 Identities=20% Similarity=0.216 Sum_probs=50.0
Q ss_pred cceeeecccchhhhhhhhhhhhHHH--HHHH-hHh-HHhHhhhhhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHhhhh
Q 005569 488 EQCIVLSEDNFELKNKQSFMRDKIK--ILES-SLN-RANIEKAASAKEVNHR---TKLMMEMVMQLATQRELIQKQVYSL 560 (690)
Q Consensus 488 ~kCilLSetN~ELneELsFLR~R~e--~LE~-sL~-~An~~K~stAKDIg~r---tK~i~dlV~qLA~ERERL~~Qi~sL 560 (690)
+.--.++..|-+|...|+-+.-..+ .++. +.+ .+.....+-..|.-.| -.+|...+.++-.||.||..|+...
T Consensus 293 e~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eq 372 (617)
T PF15070_consen 293 EHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQ 372 (617)
T ss_pred HHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3334566777777777776554332 1111 111 1223334444555444 2467888999999999999999766
Q ss_pred hhhhhHHHHHHh
Q 005569 561 TSENKLLVEKLQ 572 (690)
Q Consensus 561 ~keNkiLv~K~k 572 (690)
-....-|+..+-
T Consensus 373 k~~~q~L~h~va 384 (617)
T PF15070_consen 373 KVQCQHLAHQVA 384 (617)
T ss_pred HHHHHHhhhccc
Confidence 444455555444
No 142
>PRK10698 phage shock protein PspA; Provisional
Probab=53.06 E-value=2e+02 Score=29.53 Aligned_cols=85 Identities=9% Similarity=0.189 Sum_probs=48.2
Q ss_pred HHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchh
Q 005569 348 EQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKV 427 (690)
Q Consensus 348 kqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv 427 (690)
+++...+.|+....+.++..+.++..|++-|.+.|.+-.---.|...|+++ ..+|+-++.+.+. .+..+.
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~--------~~~~~~~~~~~~~--~a~~~f 168 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS--------RDVRRQLDSGKLD--EAMARF 168 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhCCCcc--hHHHHH
Confidence 344444444444455555555666666666666666655555566666655 3446666655442 235677
Q ss_pred hhHHHHHhhHHHHHH
Q 005569 428 GILENQLRDLEIQLQ 442 (690)
Q Consensus 428 ~~LEkqLrEsd~QLq 442 (690)
+.+|.++.+.+.+-+
T Consensus 169 ~rmE~ki~~~Ea~ae 183 (222)
T PRK10698 169 ESFERRIDQMEAEAE 183 (222)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777766654443
No 143
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.16 E-value=2.9e+02 Score=33.29 Aligned_cols=102 Identities=26% Similarity=0.352 Sum_probs=79.7
Q ss_pred HhhhhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHHHHhhhhccchhHHHhhhcHHhhcccceEEEeeccccc
Q 005569 223 SLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQ 302 (690)
Q Consensus 223 SlA~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL~grlqi~QF~Lngs~~ 302 (690)
-+|++ .++++..-.....++---+|...+++.-.+.+.|+.+-+|+=+|..--|.|+-=-+.++.+++. ++=....
T Consensus 557 ~~ar~-ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~---~~P~LS~ 632 (717)
T PF10168_consen 557 DLARE-EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS---QLPVLSE 632 (717)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCCCH
Confidence 34443 5777777777777777778888888899999999999999999999999999888888888754 4555677
Q ss_pred chhHHhhhHHHHHHHHhhhhHHHHHh
Q 005569 303 RESELKSKLGDFIEQLKAKDMVLQKL 328 (690)
Q Consensus 303 RE~eLkSKLe~~~~ql~~k~~~l~Kl 328 (690)
-|.+.+..|+..-.++..-...++++
T Consensus 633 AEr~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 633 AEREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999988888877655555544
No 144
>PRK09546 zntB zinc transporter; Reviewed
Probab=51.93 E-value=13 Score=38.88 Aligned_cols=29 Identities=7% Similarity=0.217 Sum_probs=18.4
Q ss_pred cchhHHHHHH--HHHHHHHHHHHHhcccCCC
Q 005569 662 RNRKHVFVAV--FVALLSVAAIYLFNKKHFF 690 (690)
Q Consensus 662 Ln~KhifmAv--lvlL~s~~avyl~~~~~~~ 690 (690)
++|.|-|..+ +.++++++.+|||.+|++|
T Consensus 294 l~~~~gy~~~l~im~~i~~~~~~~fkrk~Wl 324 (324)
T PRK09546 294 GGWPFGFSIFCLLLVVLIGGVAWWLKRSKWL 324 (324)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 5666655443 4445555567888888875
No 145
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=51.79 E-value=37 Score=36.52 Aligned_cols=76 Identities=13% Similarity=0.326 Sum_probs=63.2
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhh
Q 005569 96 LVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQ 175 (690)
Q Consensus 96 leFDlL~gILDSEVrELe~~~~tlq~~I~~~~~ki~s~~hl~e~f~~m~~~~~KL~d~~~sLkQ~qe~i~eIk~Qsa~Fq 175 (690)
-..++|+++||.-|.-+-..+..+..+|.+.++.|.+-.+ + ..+.+.-.++.+.++.++.+|.-....+
T Consensus 128 ~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~-~----------~~~~~~l~~i~~l~~~~~~~r~~l~~~~ 196 (316)
T PRK11085 128 NAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQ-G----------DEYDEALSTLAELEDIGWKVRLCLMDTQ 196 (316)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-c----------hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999976432 2 1244444779999999999999999999
Q ss_pred hhhhhcc
Q 005569 176 RVLSYFI 182 (690)
Q Consensus 176 r~~~~~~ 182 (690)
|++..+.
T Consensus 197 r~l~~l~ 203 (316)
T PRK11085 197 RALNFLV 203 (316)
T ss_pred HHHHHHh
Confidence 9998765
No 146
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=51.19 E-value=4.3e+02 Score=30.23 Aligned_cols=119 Identities=20% Similarity=0.284 Sum_probs=80.9
Q ss_pred HHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccch---hhhHHHhhhhccCCCC
Q 005569 346 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN---LELSEEINFLKGNNDS 422 (690)
Q Consensus 346 LEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN---~ELneEL~fLk~~~~~ 422 (690)
.|..-+..+.||.+.+. -++||+-| +|-+-|..+.||----+.||.-.-.|...- ..+-+|+..=|-+|-
T Consensus 165 ~E~~k~Kl~~qLeeEk~----RHeqis~m--LilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERergl- 237 (561)
T KOG1103|consen 165 AEIAKDKLEMQLEEEKK----RHEQISLM--LILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGL- 237 (561)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhcc-
Confidence 33444444455554443 36677776 577788888887666677776554444332 345566666666652
Q ss_pred CcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHh
Q 005569 423 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLK 473 (690)
Q Consensus 423 ~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLK 473 (690)
.--...|+++.|.|+..+..+|-.+--.-.|.||+.-|.-.-.++.||.
T Consensus 238 --qteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlE 286 (561)
T KOG1103|consen 238 --QTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLE 286 (561)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2345679999999999999999999999999999987766666666653
No 147
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=51.12 E-value=1.5e+02 Score=26.83 Aligned_cols=87 Identities=28% Similarity=0.381 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccC
Q 005569 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (690)
Q Consensus 340 ~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~ 419 (690)
++.+..+++.+..-+-+|.....- .+..+..++.++.+-..+..+|.-||+.....+...+..=-.|..+|..|++
T Consensus 20 r~e~~~~~~~~~~~e~~L~~~e~~---l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~- 95 (126)
T PF13863_consen 20 REEIERREEQLKQREEELEKKEQE---LEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKS- 95 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 334444444444443333333322 4445667888999999999999999999888888887777778888888877
Q ss_pred CCCCcchhhhHHHHHhh
Q 005569 420 NDSNTKKVGILENQLRD 436 (690)
Q Consensus 420 ~~~~s~kv~~LEkqLrE 436 (690)
...-++..|..
T Consensus 96 ------~~~k~e~~l~~ 106 (126)
T PF13863_consen 96 ------EISKLEEKLEE 106 (126)
T ss_pred ------HHHHHHHHHHH
Confidence 44455555543
No 148
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=50.51 E-value=4.7e+02 Score=30.53 Aligned_cols=131 Identities=16% Similarity=0.214 Sum_probs=64.7
Q ss_pred chhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHh-------HHHHHHHHhhhhhhhcccccccccceeeecccc
Q 005569 425 KKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWD-------METLIEDLKSKVSKAESKTESVEEQCIVLSEDN 497 (690)
Q Consensus 425 ~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~D-------ME~lIeDLKsKvsKAEsraesaE~kCilLSetN 497 (690)
.-+..+.+|+..-. +-.++....+...+.+.-|+.+..+ .+++.+.|. ++-. ++ .++.-+++.-+.
T Consensus 300 ~ll~~~~~q~~~e~-~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~l~~~l~----~~~~-~~-~~~~~~~~~~~~ 372 (650)
T TIGR03185 300 NLLDSTKAQLQKEE-QSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELA----EIDK-PA-TTDSEIPHRLSG 372 (650)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH----hhcc-cc-cccccccccCCH
Confidence 34555555555543 3335566666666777777776644 444444343 2221 12 222223333333
Q ss_pred hh--------------hhhhhhhhhhHHHHHHHhHhHHhHhhhhhh---hhh---hhhHHHHHHHHHHHHHHHHHHHHHh
Q 005569 498 FE--------------LKNKQSFMRDKIKILESSLNRANIEKAASA---KEV---NHRTKLMMEMVMQLATQRELIQKQV 557 (690)
Q Consensus 498 ~E--------------LneELsFLR~R~e~LE~sL~~An~~K~stA---KDI---g~rtK~i~dlV~qLA~ERERL~~Qi 557 (690)
.+ ....+.=++.++..+|..|...+. |++.+ .+| -.+-+-+..-+.++-.+.++++.++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~-~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~ 451 (650)
T TIGR03185 373 SELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDK-KISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQL 451 (650)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 233455567777788888877665 23322 222 2222233333555555566666665
Q ss_pred hhhhhh
Q 005569 558 YSLTSE 563 (690)
Q Consensus 558 ~sL~ke 563 (690)
..+.+.
T Consensus 452 ~~~~~~ 457 (650)
T TIGR03185 452 ETLKEA 457 (650)
T ss_pred HHHHHH
Confidence 555444
No 149
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.35 E-value=1.1e+02 Score=31.85 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=42.2
Q ss_pred HHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhc-hhh---hHHHHhhhHHHHHHHHHhhhhhh
Q 005569 314 FIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANAC-FQT---SQEQLNEMDNFIESLKESLYGAE 389 (690)
Q Consensus 314 ~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS-~ea---~~eqisdMEnvIedLKekv~kAE 389 (690)
+|..+..|-..++|+....-.|+-.+.+.-..|++--+|.+. |...+.+ ++. ++..|++||++|...++.--+.+
T Consensus 2 ~i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~-L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 2 KIKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEE-LLQERMAHVEELRQINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666776665444444444333333333333332 3333322 333 35568999999998887666554
Q ss_pred hhh
Q 005569 390 SRA 392 (690)
Q Consensus 390 SRA 392 (690)
.-+
T Consensus 81 ~~i 83 (230)
T PF10146_consen 81 EKI 83 (230)
T ss_pred HHH
Confidence 433
No 150
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=49.45 E-value=3e+02 Score=27.95 Aligned_cols=152 Identities=22% Similarity=0.244 Sum_probs=76.9
Q ss_pred HhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhh----------hhhhhchhhhHHHHhhhHH
Q 005569 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL----------QNANACFQTSQEQLNEMDN 376 (690)
Q Consensus 307 LkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL----------~~a~AS~ea~~eqisdMEn 376 (690)
|-..|..-+.+++.++...+|.=.....|...|.+-+..+++...+..-+| .++++.....+.++.+++-
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~ 107 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777665555565555555444444444444443 3333333333334444444
Q ss_pred HHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhh
Q 005569 377 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS 456 (690)
Q Consensus 377 vIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~ 456 (690)
=.+.|..++.+-+..-+.-..|.. ..-.|+. -|+ .-|--+||++|..+..+|+..-|.....-..-|
T Consensus 108 e~evL~qr~~kle~ErdeL~~kf~-------~~i~evq-Qk~-----~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 108 EHEVLEQRFEKLEQERDELYRKFE-------SAIQEVQ-QKT-----GLKNLLLEKKLQALSEQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444444444333333222222221 1111110 111 347788999988888888877776655444444
Q ss_pred hHHHHHHhHHHHHHH
Q 005569 457 MLYSAIWDMETLIED 471 (690)
Q Consensus 457 MLysti~DME~lIeD 471 (690)
+=-.++.++-.-|+|
T Consensus 175 ldp~~~~~v~~~l~~ 189 (201)
T PF13851_consen 175 LDPAALSQVSKKLED 189 (201)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444444
No 151
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=48.89 E-value=4.9 Score=43.71 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=31.3
Q ss_pred HHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHh
Q 005569 469 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 522 (690)
Q Consensus 469 IeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An 522 (690)
+.+|.+.|..+|.|...+|+.+--++.+.-++.+.+.-|..++.-||+..++.|
T Consensus 139 ~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnN 192 (370)
T PF02994_consen 139 DESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNN 192 (370)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 345555555556665556655555555556666667777777777777766655
No 152
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=48.47 E-value=2.2e+02 Score=28.92 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=45.8
Q ss_pred HHhhhHHHHHHHHhhhhHHHHHhhhc---------CchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHH
Q 005569 306 ELKSKLGDFIEQLKAKDMVLQKLEST---------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDN 376 (690)
Q Consensus 306 eLkSKLe~~~~ql~~k~~~l~Kle~~---------~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEn 376 (690)
-.+.++.++...+..+..++.-|+.. .=.+++.+++.-..+-+..+..+.++....+......++|.++|.
T Consensus 59 v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ 138 (190)
T PF05266_consen 59 VKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEM 138 (190)
T ss_pred HHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34566677777777777777777743 114455555444444445555555555554444444555666666
Q ss_pred HHHHHHHh
Q 005569 377 FIESLKES 384 (690)
Q Consensus 377 vIedLKek 384 (690)
-|-.|++.
T Consensus 139 ki~el~~~ 146 (190)
T PF05266_consen 139 KILELQRQ 146 (190)
T ss_pred HHHHHHHH
Confidence 66666654
No 153
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=47.99 E-value=1.6e+02 Score=31.84 Aligned_cols=93 Identities=9% Similarity=0.100 Sum_probs=42.2
Q ss_pred hhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhh
Q 005569 456 SMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHR 535 (690)
Q Consensus 456 ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~r 535 (690)
+.....+.+++.=+.....+...+++|....+..=.+ . ..--+--+.=||.++..+|..|.+.. .-.|-+
T Consensus 211 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~i~~l~~~l~~le~~l~~l~-------~~y~~~ 280 (444)
T TIGR03017 211 DVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDAL-P--EVIANPIIQNLKTDIARAESKLAELS-------QRLGPN 280 (444)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-h--hhhcChHHHHHHHHHHHHHHHHHHHH-------HHhCCC
Confidence 3445555555555555555555555555444332111 1 11112233446666666665555431 112333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 005569 536 TKLMMEMVMQLATQRELIQKQVY 558 (690)
Q Consensus 536 tK~i~dlV~qLA~ERERL~~Qi~ 558 (690)
.-.+..+-.|++.=|..|+.++.
T Consensus 281 hP~v~~l~~~i~~l~~~l~~e~~ 303 (444)
T TIGR03017 281 HPQYKRAQAEINSLKSQLNAEIK 303 (444)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 154
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=47.87 E-value=1.1e+02 Score=30.28 Aligned_cols=114 Identities=18% Similarity=0.278 Sum_probs=43.5
Q ss_pred HHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHH-
Q 005569 460 SAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKL- 538 (690)
Q Consensus 460 sti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~- 538 (690)
+.+.+++..|-.|..-+.-+--.-.....+-+-+++.+-++..+++-...++..|+.-+..-...=..-...|.-+.|.
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666555555555544444455666666777767777777666677666665554444333333344444444
Q ss_pred --HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 005569 539 --MMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (690)
Q Consensus 539 --i~dlV~qLA~ERERL~~Qi~sL~keNkiLv~K~k~ 573 (690)
+.|=..-|=++-.-+..++..|.++|+-||.++-.
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777888899999999999988753
No 155
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=47.63 E-value=4.8e+02 Score=29.82 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=62.5
Q ss_pred hHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHh
Q 005569 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (690)
Q Consensus 367 ~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkA 446 (690)
+...+..++.....|..... |++. +...-....++...+..+|.-| +++++
T Consensus 185 fl~rtl~~e~~~~~L~~~~~-A~~~-------~~~~l~~~~e~~~~l~l~~~~~---------------------~~~~~ 235 (511)
T PF09787_consen 185 FLKRTLKKEIERQELEERPK-ALRH-------YIEYLRESGELQEQLELLKAEG---------------------ESEEA 235 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHHHh---------------------HHHHH
Confidence 44556677777777777666 5432 2222224445555555555543 33333
Q ss_pred hhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHh
Q 005569 447 SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE 524 (690)
Q Consensus 447 S~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~ 524 (690)
...--.. ---.++.+=|.+|+.||++-..=......+--.+--|-.-..-+.+|+.-||..++.|..-++.+...
T Consensus 236 el~~Yk~---kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~ 310 (511)
T PF09787_consen 236 ELQQYKQ---KAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQ 310 (511)
T ss_pred HHHHHHH---HHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111 12345678899999999965541111100000011122233345566666666666666655554443
No 156
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=47.37 E-value=1.9e+02 Score=29.58 Aligned_cols=86 Identities=28% Similarity=0.365 Sum_probs=50.0
Q ss_pred hhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhh
Q 005569 426 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQS 505 (690)
Q Consensus 426 kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELs 505 (690)
|-.+||+||--..--+++|..--.+.-|+|.-| .+.=.+-.-++++|.-| .+-.|..|.=||.| -+
T Consensus 72 RCslLEKQLeyMRkmv~~ae~er~~~le~q~~l---~~e~~~~~~~~~~klek----Le~LE~E~~rLt~~-------Q~ 137 (178)
T PF14073_consen 72 RCSLLEKQLEYMRKMVESAEKERNAVLEQQVSL---QRERQQDQSELQAKLEK----LEKLEKEYLRLTAT-------QS 137 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHhccchhhHHHHHHH----HHHHHHHHHHHHHH-------HH
Confidence 445666766666555666665555666666222 11111122234544433 34567777766644 34
Q ss_pred hhhhHHHHHHHhHhHHhHhh
Q 005569 506 FMRDKIKILESSLNRANIEK 525 (690)
Q Consensus 506 FLR~R~e~LE~sL~~An~~K 525 (690)
+-=+++..||.-|++.++.+
T Consensus 138 ~ae~Ki~~LE~KL~eEehqR 157 (178)
T PF14073_consen 138 LAETKIKELEEKLQEEEHQR 157 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55578999999999988754
No 157
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=47.22 E-value=16 Score=36.50 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHH-hcccCC
Q 005569 667 VFVAVFVALLSVAAIYL-FNKKHF 689 (690)
Q Consensus 667 ifmAvlvlL~s~~avyl-~~~~~~ 689 (690)
|..||.|+|+.+|+-|+ ||||.|
T Consensus 120 Ivsav~valvGAvsSyiaYqkKKl 143 (169)
T PF12301_consen 120 IVSAVVVALVGAVSSYIAYQKKKL 143 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67888888888887765 676654
No 158
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=47.03 E-value=11 Score=41.21 Aligned_cols=60 Identities=28% Similarity=0.396 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHH
Q 005569 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (690)
Q Consensus 375 EnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QL 441 (690)
++++.+|...|..+|.|...+|.++..++.+.-++...+..|.+ ++.-||+..|..++++
T Consensus 136 ~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~-------kl~DlEnrsRRnNiRI 195 (370)
T PF02994_consen 136 ENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLED-------KLDDLENRSRRNNIRI 195 (370)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHhhccCCceeE
Confidence 34456777888888888888888888888888888777777665 7777888777777665
No 159
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=46.25 E-value=3e+02 Score=28.48 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=10.7
Q ss_pred HHhhHHHHHHHhHhhhhhhHH
Q 005569 433 QLRDLEIQLQQAKVSSEASQE 453 (690)
Q Consensus 433 qLrEsd~QLqhAkAS~eAs~E 453 (690)
++.+...+++.|++..++...
T Consensus 147 ~~~~a~~~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 147 ELDHARKALLSAKAALNAAIQ 167 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556555554444
No 160
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=46.13 E-value=3e+02 Score=32.53 Aligned_cols=44 Identities=9% Similarity=0.173 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhhhhhh-----hhchhh--hHHHHhhhHHHHHHHHHhhh
Q 005569 343 VKSLEEQLKESEIRLQNA-----NACFQT--SQEQLNEMDNFIESLKESLY 386 (690)
Q Consensus 343 V~sLEkqLrESe~QL~~a-----~AS~ea--~~eqisdMEnvIedLKekv~ 386 (690)
|..++|+||+.+.|.-.- .-+.+. +++..+-+.+.|.|++.|+.
T Consensus 200 y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 200 YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIK 250 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 557899999998873322 222232 45668888888888887753
No 161
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.00 E-value=1e+02 Score=30.92 Aligned_cols=85 Identities=21% Similarity=0.319 Sum_probs=50.5
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHH
Q 005569 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (690)
Q Consensus 332 ~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELne 411 (690)
|+-+...++.++..|.+++.+....+...... |++.|..-...+.|+. .-.++..|...+.+|..
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~--------------i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEK--------------IEEAKKGREESEEREE-LLEELEELKKELKELKK 124 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHH
Confidence 55666777777777777766555443333333 4444433333344444 44667778888888888
Q ss_pred HhhhhccCCCCCcchhhhHHHHH
Q 005569 412 EINFLKGNNDSNTKKVGILENQL 434 (690)
Q Consensus 412 EL~fLk~~~~~~s~kv~~LEkqL 434 (690)
||..++..+ .+++..+.+.+
T Consensus 125 el~~~~~~D---p~~i~~~~~~~ 144 (188)
T PF03962_consen 125 ELEKYSEND---PEKIEKLKEEI 144 (188)
T ss_pred HHHHHHhcC---HHHHHHHHHHH
Confidence 888777654 44555544443
No 162
>PF13514 AAA_27: AAA domain
Probab=43.73 E-value=7.4e+02 Score=30.90 Aligned_cols=223 Identities=21% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhh---hhhhhhchhhhHHHHhhhHHHHHHHHHhhhh
Q 005569 311 LGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR---LQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (690)
Q Consensus 311 Le~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~Q---L~~a~AS~ea~~eqisdMEnvIedLKekv~k 387 (690)
|-+-+++|...-..|=|=.+ .+|.+..+...+..+++++++.... ........+..+.++.++..=+..+......
T Consensus 128 l~~~~~~L~~ea~~Lfkprg-~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ 206 (1111)
T PF13514_consen 128 LSQVLKQLDKEADELFKPRG-RKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRR 206 (1111)
T ss_pred HHHHHHHHHHHHHHhhCCCC-CChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhHHHhhhhhccchhhhH--HHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhH--HHHHH
Q 005569 388 AESRAESAEEKVTQLTDTNLELS--EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSML--YSAIW 463 (690)
Q Consensus 388 AESRAe~AE~kc~~LteTN~ELn--eEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~ML--ysti~ 463 (690)
- .|...+-.....+..-..+|. .++..|-..+ ..+..-++.++.....+++.+......-.++-.-+ ...+-
T Consensus 207 l-er~~~~~p~~~~~~~l~~~l~~l~~~~~~p~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll 282 (1111)
T PF13514_consen 207 L-ERLRRAWPLLAELQQLEAELAELGEVPDFPEDG---AERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELL 282 (1111)
T ss_pred H-HHHHHHhHHHHHHHHHHHHHHhcCCcCCCChhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q ss_pred hHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhh--------
Q 005569 464 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHR-------- 535 (690)
Q Consensus 464 DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~r-------- 535 (690)
+-+.-|++|-... -.....+..+..++..+.........-...||..
T Consensus 283 ~~~~~I~~L~~~~-------------------------~~~~~~~~dl~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~ 337 (1111)
T PF13514_consen 283 AHAAEIEALEEQR-------------------------GEYRKARQDLPRLEAELAELEAELRALLAQLGPDWDEEDLEA 337 (1111)
T ss_pred hhHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhh
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 005569 536 ---TKLMMEMVMQLATQRELIQKQVYSLTSE 563 (690)
Q Consensus 536 ---tK~i~dlV~qLA~ERERL~~Qi~sL~ke 563 (690)
+-....-|-+|..+++.|..++..+...
T Consensus 338 ~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~ 368 (1111)
T PF13514_consen 338 LDPSLAARERIRELLQEREQLEQALAQARRE 368 (1111)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 163
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.72 E-value=64 Score=31.08 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=29.7
Q ss_pred hhHHHHHHHHhhhhHHHHHhhhc--------------CchhhhhHHHHHHHHHHHHHHhhhhhhhhhhc
Q 005569 309 SKLGDFIEQLKAKDMVLQKLEST--------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANAC 363 (690)
Q Consensus 309 SKLe~~~~ql~~k~~~l~Kle~~--------------~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS 363 (690)
+-+..++++|-.......|.=+- ++.|+..|...+..|.+++++...+.....+.
T Consensus 33 ~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~e 101 (169)
T PF07106_consen 33 TAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAE 101 (169)
T ss_pred HHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566665554444443221 34556666666777777766665554444443
No 164
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.42 E-value=1.5e+02 Score=30.42 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=17.1
Q ss_pred HHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhh
Q 005569 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQ 401 (690)
Q Consensus 370 qisdMEnvIedLKekv~kAESRAe~AE~kc~~ 401 (690)
+++++++=...|+..+..+.++.+.++++-..
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554433
No 165
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=42.28 E-value=1.8e+02 Score=31.60 Aligned_cols=63 Identities=25% Similarity=0.313 Sum_probs=36.5
Q ss_pred hhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHH
Q 005569 328 LESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (690)
Q Consensus 328 le~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~ 397 (690)
++.+.+.|+..+++++..+..++... +...+..+.++++...-|++.+.+....++....||.
T Consensus 198 ~~~~d~~eL~~lk~~l~~~~~ei~~~-------~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 198 LEDCDPTELDRAKEKLKKLLQEIMIK-------VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666766655554444333 3333445556666666677776666666666666665
No 166
>PF15294 Leu_zip: Leucine zipper
Probab=41.23 E-value=95 Score=33.56 Aligned_cols=70 Identities=23% Similarity=0.318 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhcc------C-C--CCCcchhhhHHHHHhhHHHHHHHh
Q 005569 375 DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG------N-N--DSNTKKVGILENQLRDLEIQLQQA 444 (690)
Q Consensus 375 EnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~------~-~--~~~s~kv~~LEkqLrEsd~QLqhA 444 (690)
-.-|..|++..-++-+|..+.|..|+..-+.+..|...|+-|+. . . ......+.-||.++.-+..+++.+
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 34588899999999999999999999999999999999999988 1 0 111233445677766665555544
No 167
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=40.88 E-value=2.2e+02 Score=30.01 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHH
Q 005569 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 397 (690)
Q Consensus 342 KV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~ 397 (690)
.+..++.++.....++..+.......+. -+...+..+..|+.+.+.|+.
T Consensus 87 ~l~~a~a~l~~a~a~l~~~~~~~~~~~~-------~~~~~~~~i~~a~~~l~~a~~ 135 (346)
T PRK10476 87 TVAQAQADLALADAQIMTTQRSVDAERS-------NAASANEQVERARANAKLATR 135 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444332222211 233455556666665555543
No 168
>PHA02414 hypothetical protein
Probab=40.46 E-value=66 Score=30.45 Aligned_cols=72 Identities=29% Similarity=0.344 Sum_probs=50.8
Q ss_pred HHHHHHHhhhhhhhhhhhHHHhhhhhcc--chhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHh
Q 005569 377 FIESLKESLYGAESRAESAEEKVTQLTD--TNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQ 454 (690)
Q Consensus 377 vIedLKekv~kAESRAe~AE~kc~~Lte--TN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~Eq 454 (690)
=|.+|-++|-.-|+..|..| ||+ +|.||+-+++-||+ =+.+|.+.+ .--.||
T Consensus 5 ~in~Lv~~v~~ledKiQ~Ge-----lt~kgdn~eL~~av~ELRd-------ivvslDKd~--------------Av~sEK 58 (111)
T PHA02414 5 EINNLVSQVETLEDKIQEGE-----LTDKGDNKELEVAVAELRD-------IVVSLDKDV--------------AVNSEK 58 (111)
T ss_pred HHHHHHHHHHHHHHHHhcCc-----cccCCchHHHHHHHHHHHH-------HHHHhhhHh--------------hhhHHH
Confidence 35555555555555555544 332 89999999999998 566666543 123589
Q ss_pred hhhHHHHHHhHHHHHHHHhh
Q 005569 455 QSMLYSAIWDMETLIEDLKS 474 (690)
Q Consensus 455 Q~MLysti~DME~lIeDLKs 474 (690)
|+-+|.-|.-.|.=|+.|..
T Consensus 59 qshi~yQi~~Lee~i~aL~~ 78 (111)
T PHA02414 59 QSHIYYQIERLEEKISALAE 78 (111)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888754
No 169
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=40.29 E-value=3.4e+02 Score=30.69 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=69.2
Q ss_pred hhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhh--hhhhHHhhhhHHH--
Q 005569 385 LYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS--SEASQEQQSMLYS-- 460 (690)
Q Consensus 385 v~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS--~eAs~EqQ~MLys-- 460 (690)
..|+-.+.+--|.=.-.+.+.|..|.=-|+.+.-.-.-+.+.+..|-+.|.|. +..|++-++ .....||.+||.+
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~-layqq~L~~eyQatf~eq~~ml~kRQ 200 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA-LAYQQELNDEYQATFVEQHSMLDKRQ 200 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH-HHHHHHHHHHhhcccccchhhhHHHH
Confidence 34555566666666677777777777666666544222355666666666665 333443332 3467889999865
Q ss_pred -HHHhHHHHHHHHhh----hhhhhccccccccccee-eecccchhhhhhhhhhhhHHHHHHH
Q 005569 461 -AIWDMETLIEDLKS----KVSKAESKTESVEEQCI-VLSEDNFELKNKQSFMRDKIKILES 516 (690)
Q Consensus 461 -ti~DME~lIeDLKs----KvsKAEsraesaE~kCi-lLSetN~ELneELsFLR~R~e~LE~ 516 (690)
.|+-.|.=..||-- =.--+.++.|+++.+-. .=++--.-|.-|+.-.=-++++.|.
T Consensus 201 ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~~~~~~s~~v~~ql~selkkivf~~enie~ 262 (401)
T PF06785_consen 201 AYIGKLESKVQDLMYEIRNLLQLESDMKESMPSTPSPSSQDVPKQLVSELKKIVFKVENIEA 262 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhhhhHHHHHHHHHHHHHHHhhHHH
Confidence 34444433333211 11225677777777644 2222223333333333334555443
No 170
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=39.82 E-value=2.5e+02 Score=30.55 Aligned_cols=153 Identities=24% Similarity=0.266 Sum_probs=75.0
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHH-------HHHhHhhh
Q 005569 376 NFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQ-------LQQAKVSS 448 (690)
Q Consensus 376 nvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~Q-------LqhAkAS~ 448 (690)
+-+.+||+.+..-|.+-..|=.--.||---..-|.=++..||+ +++-||..+-+++-. ++.-|-..
T Consensus 77 ~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd-------~lee~eE~~~~~~re~~eK~~elEr~K~~~ 149 (302)
T PF09738_consen 77 ASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKD-------KLEELEETLAQLQREYREKIRELERQKRAH 149 (302)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655444333333333333333333334555555 777777666555443 33333344
Q ss_pred hhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeec--ccchhhhhhhhhhhhHHHHHHHhHhHHhHhhh
Q 005569 449 EASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLS--EDNFELKNKQSFMRDKIKILESSLNRANIEKA 526 (690)
Q Consensus 449 eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLS--etN~ELneELsFLR~R~e~LE~sL~~An~~K~ 526 (690)
+..+.+...|..++..-+.+| ++.=|||. .+|-|.+.++..-= ...+.--|-..|+-.+.
T Consensus 150 d~L~~e~~~Lre~L~~rdeli-----------------~khGlVlv~~~~ngd~~~~~~~~~-~~~~~~vs~e~a~~L~~ 211 (302)
T PF09738_consen 150 DSLREELDELREQLKQRDELI-----------------EKHGLVLVPDATNGDTSDEPNNVG-HPKRALVSQEAAQLLES 211 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------------HHCCeeeCCCCCCCccccCccccC-CCcccccchhhhhhhcc
Confidence 444444444444444444444 44555555 68888888765321 11111112222222222
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 005569 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 560 (690)
Q Consensus 527 stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~sL 560 (690)
+ -|-. +-.-+-+|+-||+.|..||..|
T Consensus 212 a--G~g~-----LDvRLkKl~~eke~L~~qv~kl 238 (302)
T PF09738_consen 212 A--GDGS-----LDVRLKKLADEKEELLEQVRKL 238 (302)
T ss_pred c--CCCC-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1111 1112568899999999999655
No 171
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=39.70 E-value=6.6e+02 Score=29.14 Aligned_cols=105 Identities=22% Similarity=0.378 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhch----------hhhHHHHhhhHHHHHHHHHhh-------hhhhhhhhhHHHhh
Q 005569 337 LTMKEKVKSLEEQLKESEIRLQNANACF----------QTSQEQLNEMDNFIESLKESL-------YGAESRAESAEEKV 399 (690)
Q Consensus 337 ~tL~eKV~sLEkqLrESe~QL~~a~AS~----------ea~~eqisdMEnvIedLKekv-------~kAESRAe~AE~kc 399 (690)
..+.+.+..+.++-+.....+.+.+.|- .....++..++.....+...+ +....+.+.....+
T Consensus 309 ~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l 388 (560)
T PF06160_consen 309 KELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQL 388 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHH
Confidence 3445555556666666655555555441 111223444444444433333 33344444555555
Q ss_pred hhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHH
Q 005569 400 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL 441 (690)
Q Consensus 400 ~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QL 441 (690)
..+.+.=.++++.|..||..--..-+++..+...|++....+
T Consensus 389 ~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~l 430 (560)
T PF06160_consen 389 EEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRL 430 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555532112233344444444443333
No 172
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.47 E-value=8.8e+02 Score=30.52 Aligned_cols=106 Identities=21% Similarity=0.321 Sum_probs=75.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHH----HhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhh
Q 005569 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQ----LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLEL 409 (690)
Q Consensus 334 sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eq----isdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~EL 409 (690)
-|+.||..|.+.|+..|.+....+..++-..+..-.+ |++|.++...||+ --.|...|+-.--+|
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE-----------~q~kl~~l~~Ekq~l 512 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKE-----------LQEKLQKLAPEKQEL 512 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhHHHHH
Confidence 4666999999999999999999999988776665443 5555555554444 345667777777788
Q ss_pred HHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhh
Q 005569 410 SEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEA 450 (690)
Q Consensus 410 neEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eA 450 (690)
|.-|.---....-++-|+..|++.++.-+.--||-|-.+++
T Consensus 513 ~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqlde 553 (1118)
T KOG1029|consen 513 NHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDE 553 (1118)
T ss_pred HHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776554443223567888888888777777777766654
No 173
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.30 E-value=2.4e+02 Score=33.63 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=30.6
Q ss_pred hhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHH
Q 005569 401 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 442 (690)
Q Consensus 401 ~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLq 442 (690)
-+-+-|+++-.|...+|-.. ++|++-||++.+.-+.-.+
T Consensus 442 aevdrlLeilkeveneKnDk---dkkiaeler~~kdqnkkva 480 (654)
T KOG4809|consen 442 AEVDRLLEILKEVENEKNDK---DKKIAELERHMKDQNKKVA 480 (654)
T ss_pred HHHHHHHHHHHHHHhhhccc---cchhhhcCchhhhhhhHHh
Confidence 35567999999999999866 6799999988877655443
No 174
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.85 E-value=4.2e+02 Score=26.67 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=11.1
Q ss_pred HHHhhhHHHHHHHHHhhhhhhhhhh
Q 005569 369 EQLNEMDNFIESLKESLYGAESRAE 393 (690)
Q Consensus 369 eqisdMEnvIedLKekv~kAESRAe 393 (690)
.++.+..+-|..++..+....++..
T Consensus 84 ~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 84 KRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 175
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=38.37 E-value=1.3e+02 Score=36.31 Aligned_cols=81 Identities=25% Similarity=0.283 Sum_probs=57.9
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhh
Q 005569 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEA 450 (690)
Q Consensus 371 isdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eA 450 (690)
-.+++.+|++|-+.....|.+.+.++..-..+....-+|.+++..|+.. |-. .-.+|
T Consensus 510 ~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~------~~~-----------------~~~~a 566 (771)
T TIGR01069 510 KEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER------ERN-----------------KKLEL 566 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-----------------HHHHH
Confidence 3489999999999988888888888887777766666666666655552 222 23344
Q ss_pred hHHhhhhHHHHHHhHHHHHHHHhh
Q 005569 451 SQEQQSMLYSAIWDMETLIEDLKS 474 (690)
Q Consensus 451 s~EqQ~MLysti~DME~lIeDLKs 474 (690)
-.|-+.++..+-...+.+|++||.
T Consensus 567 ~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 567 EKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566677777788899999986
No 176
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.08 E-value=1.2e+02 Score=28.31 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=11.5
Q ss_pred hhhhHHHHHhhHHHHHHHhHh
Q 005569 426 KVGILENQLRDLEIQLQQAKV 446 (690)
Q Consensus 426 kv~~LEkqLrEsd~QLqhAkA 446 (690)
+...|++++.+...+|+.+.+
T Consensus 93 q~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 93 QEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544
No 177
>PRK10698 phage shock protein PspA; Provisional
Probab=38.07 E-value=4.7e+02 Score=26.94 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=73.4
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhh-----hhhHHHhhhhhccchh
Q 005569 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR-----AESAEEKVTQLTDTNL 407 (690)
Q Consensus 333 ~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESR-----Ae~AE~kc~~LteTN~ 407 (690)
+|+ ..|.--+..++..|.+....+..+.|+.-..+.++.+.+..|.+...+.-.|=.. |..|=.+-....+.-.
T Consensus 24 DP~-k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 24 DPQ-KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 344 2455577777777777766666666665556667777777777777666555332 1121111122223333
Q ss_pred hhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhh---hhhhHHhhhhHHH-HHHhHHHHHHHHhhhhhhhcccc
Q 005569 408 ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS---SEASQEQQSMLYS-AIWDMETLIEDLKSKVSKAESKT 483 (690)
Q Consensus 408 ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS---~eAs~EqQ~MLys-ti~DME~lIeDLKsKvsKAEsra 483 (690)
.|..++.-.+..-+.-...+.-|+.++.+......--+|- +.|.+.=+.++.+ ...+-=..++.+..||...|.+|
T Consensus 103 ~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~a 182 (222)
T PRK10698 103 TLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEA 182 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3333333333311000113333333333333332222222 2222222222221 01122235667888888888888
Q ss_pred cccc
Q 005569 484 ESVE 487 (690)
Q Consensus 484 esaE 487 (690)
+...
T Consensus 183 ea~~ 186 (222)
T PRK10698 183 ESHG 186 (222)
T ss_pred hHhh
Confidence 8764
No 178
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=37.33 E-value=3.3e+02 Score=24.92 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhch--hhhHHHHhhhHHHHHHH---HHhhhhhhhhhh
Q 005569 338 TMKEKVKSLEEQLKESEIRLQNANACF--QTSQEQLNEMDNFIESL---KESLYGAESRAE 393 (690)
Q Consensus 338 tL~eKV~sLEkqLrESe~QL~~a~AS~--ea~~eqisdMEnvIedL---Kekv~kAESRAe 393 (690)
.+...++.|..||.+.+..|....... ...+.++..++.+-.++ +..+......++
T Consensus 4 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~ 64 (213)
T cd00176 4 QFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGE 64 (213)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 345678888888888888877666443 22334444444444444 555555554444
No 179
>PHA00327 minor capsid protein
Probab=37.15 E-value=48 Score=33.75 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHH--HHHHhhc
Q 005569 543 VMQLATQRELIQKQVYSLTSENKLL--VEKLQYS 574 (690)
Q Consensus 543 V~qLA~ERERL~~Qi~sL~keNkiL--v~K~k~~ 574 (690)
|.+|..||+|+|.++..|...|+.+ ..|..+.
T Consensus 110 v~~l~~~~~r~~aelQnL~~q~r~in~~sav~eg 143 (187)
T PHA00327 110 VQRLTYERKRMQAELQNLREQNRLINFNSAVREG 143 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 5688899999999999999999987 5666654
No 180
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.04 E-value=74 Score=37.81 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=48.4
Q ss_pred hhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCccchhhcccCCcccccccccccchHHHhHHHHHHHHHhhhhhh
Q 005569 150 LHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELD 229 (690)
Q Consensus 150 L~d~~~sLkQ~qe~i~eIk~Qsa~Fqr~~~~~~~~~~~~~~~~~e~g~~~n~~~~~~mqt~eqqRniLrMLEkSlA~ElD 229 (690)
-.+.+--+.+++..|..++.+.+.|.+-.. .++|. +-=+||++.-|. .
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~----------------------------~rei~~~~~~I~---~ 485 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRREVR-DKVRK----------------------------DREIRARDRRIE---R 485 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh----------------------------hHHHHHHHHHHH---H
Confidence 334444455566666666666666666553 12222 223778887776 4
Q ss_pred hhhhhhHhhhhHHHhhhhhcchhh
Q 005569 230 LEKKISELNQNEEQLKLKLHHTEQ 253 (690)
Q Consensus 230 LEKkL~esr~~eEeLklKlh~~Eq 253 (690)
|+++|.+.....++|+-||-..++
T Consensus 486 L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 486 LEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999977774
No 181
>PRK10869 recombination and repair protein; Provisional
Probab=36.86 E-value=6.5e+02 Score=29.20 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=46.8
Q ss_pred ccccceeeecccchhhhh---hhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHH------HHHHHHHH
Q 005569 485 SVEEQCIVLSEDNFELKN---KQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLA------TQRELIQK 555 (690)
Q Consensus 485 saE~kCilLSetN~ELne---ELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA------~ERERL~~ 555 (690)
..++=-+.|.|...+|.. .++|=-.|++.+|.-|..-+..|-..-.+|.-=-.....+-.+|. ...+.|+.
T Consensus 269 ~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~ 348 (553)
T PRK10869 269 MLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLAL 348 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 333344455555555554 445556788899988888888776654333222222222222222 23455555
Q ss_pred HhhhhhhhhhHHHHHHh
Q 005569 556 QVYSLTSENKLLVEKLQ 572 (690)
Q Consensus 556 Qi~sL~keNkiLv~K~k 572 (690)
++..+.++=.-++.++.
T Consensus 349 e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 349 AVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555444
No 182
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.40 E-value=8.1e+02 Score=29.24 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhh
Q 005569 312 GDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR 391 (690)
Q Consensus 312 e~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESR 391 (690)
..|.++++.....+--++++...+.+.+-.-+..||++.-+ -.-..+.++.-|+.+|.+.+.....-+-+
T Consensus 241 kllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~----------e~~e~rk~v~k~~~l~q~~~~~~~eL~K~ 310 (613)
T KOG0992|consen 241 KLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAE----------ETTEKRKAVKKRDDLIQSRKQVSFELEKA 310 (613)
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hh--------------------hHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhh-
Q 005569 392 AE--------------------SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEA- 450 (690)
Q Consensus 392 Ae--------------------~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eA- 450 (690)
-+ .|=.+|. ++| -...+++|+|-.-..--..+..++.-|++.+-.--.-.+-+++
T Consensus 311 kde~~~n~~~~~lie~lq~el~~al~~c~---eeN-~~~t~~n~e~~~lq~~etek~ee~tlla~~~dr~se~~e~teqk 386 (613)
T KOG0992|consen 311 KDEIKQNDDKVKLIEELQDELSVALKECR---EEN-KIETQVNFERNKLQNEETEKKEEKTLLAAADDRFSEYSELTEQK 386 (613)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHH---Hhh-hHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHhhhhHHHHHHhHHHHHHHHhhhhhhh
Q 005569 451 SQEQQSMLYSAIWDMETLIEDLKSKVSKA 479 (690)
Q Consensus 451 s~EqQ~MLysti~DME~lIeDLKsKvsKA 479 (690)
-+|=++-+-.+=.---..|.+|+....++
T Consensus 387 leelk~~f~a~q~K~a~tikeL~~El~~y 415 (613)
T KOG0992|consen 387 LEELKVQFTAKQEKHAETIKELEIELEEY 415 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 183
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=36.04 E-value=1.4e+02 Score=28.40 Aligned_cols=75 Identities=25% Similarity=0.335 Sum_probs=44.0
Q ss_pred HhHHHHHHHHhhhhhhhcc-cccccccceeeecccchhhhhhhh--hhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHH
Q 005569 463 WDMETLIEDLKSKVSKAES-KTESVEEQCIVLSEDNFELKNKQS--FMRDKIKILESSLNRANIEKAASAKEVNHRTKLM 539 (690)
Q Consensus 463 ~DME~lIeDLKsKvsKAEs-raesaE~kCilLSetN~ELneELs--FLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i 539 (690)
+.||.-|.||.++.+|+.+ -.|+ ..+.+|=-+++= -|+.| ++|.+-|+++|+ -+
T Consensus 3 sQmElrIkdLeselsk~Ktsq~d~--------~~~eLEkYkqly~eElk~r-~SLs~kL~ktne--------------rL 59 (111)
T PF12001_consen 3 SQMELRIKDLESELSKMKTSQEDS--------NKTELEKYKQLYLEELKLR-KSLSNKLNKTNE--------------RL 59 (111)
T ss_pred hHHHHHHHHHHHHHHHhHhHhhhh--------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--------------HH
Confidence 4799999999999999983 3333 133333333321 12222 455666666554 34
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 005569 540 MEMVMQLATQRELIQKQVYSL 560 (690)
Q Consensus 540 ~dlV~qLA~ERERL~~Qi~sL 560 (690)
-+.=++|-.||+|=.-.++++
T Consensus 60 aevstkLl~Ekeq~rs~lstl 80 (111)
T PF12001_consen 60 AEVSTKLLVEKEQNRSLLSTL 80 (111)
T ss_pred HHHhhHHHHHHHhcccccccc
Confidence 455567777887654445554
No 184
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.27 E-value=2e+02 Score=30.81 Aligned_cols=125 Identities=23% Similarity=0.233 Sum_probs=68.4
Q ss_pred hHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHH-----------hhHHHHHHHhHhhhhhhHHhhhhHHHHH
Q 005569 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQL-----------RDLEIQLQQAKVSSEASQEQQSMLYSAI 462 (690)
Q Consensus 394 ~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqL-----------rEsd~QLqhAkAS~eAs~EqQ~MLysti 462 (690)
-....|-.|+.+|.+|-.++-..-+++ -.+|..|=.|- .-.+.||+.|++.-.+ -..+.-+.+
T Consensus 10 el~~h~~~L~~~N~~L~~~IqdtE~st---~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe---~eek~e~~l 83 (258)
T PF15397_consen 10 ELKKHEDFLTKLNKELIKEIQDTEDST---ALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQE---WEEKEESKL 83 (258)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhHHhhH---HHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH---HHHHHHhHH
Confidence 345678899999999999887665543 34444331111 0123345555554433 233455566
Q ss_pred HhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHH
Q 005569 463 WDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEM 542 (690)
Q Consensus 463 ~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dl 542 (690)
++++.=.++|+.|+-|+ ++||+||+.=.+ +|--+|+=-|-+|
T Consensus 84 ~~Lq~ql~~l~akI~k~---------------------~~el~~L~TYkD-----------------~EYPvK~vqIa~L 125 (258)
T PF15397_consen 84 SKLQQQLEQLDAKIQKT---------------------QEELNFLSTYKD-----------------HEYPVKAVQIANL 125 (258)
T ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHhh-----------------hhhhHHHHHHHHH
Confidence 66666666666665554 466666664221 2223344446666
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 005569 543 VMQLATQRELIQKQVYSLTS 562 (690)
Q Consensus 543 V~qLA~ERERL~~Qi~sL~k 562 (690)
+.||.--+++-+..+..|..
T Consensus 126 ~rqlq~lk~~qqdEldel~e 145 (258)
T PF15397_consen 126 VRQLQQLKDSQQDELDELNE 145 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555555433
No 185
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=34.99 E-value=7.7e+02 Score=28.54 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhc----------hhhhHHHHhhhHHHHHHHHHh-------hhhhhhhhhhHHHhh
Q 005569 337 LTMKEKVKSLEEQLKESEIRLQNANAC----------FQTSQEQLNEMDNFIESLKES-------LYGAESRAESAEEKV 399 (690)
Q Consensus 337 ~tL~eKV~sLEkqLrESe~QL~~a~AS----------~ea~~eqisdMEnvIedLKek-------v~kAESRAe~AE~kc 399 (690)
..+.+.+..++++.++....+.+.+.+ ....++++..++.-+..+... ++..+.+-+....+|
T Consensus 313 ~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~l 392 (569)
T PRK04778 313 DTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQL 392 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 356677777778777777777777766 333444555444444443333 344455555555666
Q ss_pred hhhccchhhhHHHhhhhccC
Q 005569 400 TQLTDTNLELSEEINFLKGN 419 (690)
Q Consensus 400 ~~LteTN~ELneEL~fLk~~ 419 (690)
..+...=.++.+.|..||..
T Consensus 393 eeie~eq~ei~e~l~~Lrk~ 412 (569)
T PRK04778 393 EEIEKEQEKLSEMLQGLRKD 412 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666664
No 186
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=34.44 E-value=5e+02 Score=26.17 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=50.2
Q ss_pred HHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhh
Q 005569 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 449 (690)
Q Consensus 370 qisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~e 449 (690)
-+.++-.+|..+|.-...=. .+=.-+-.+..+-..+...+.-|++++.+..+|+..+++.+++.+...++|+..-+
T Consensus 92 ~L~ey~r~~~Svk~~~~~R~----~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e 167 (216)
T cd07627 92 TLDEYIRSIGSVRAAFAQRQ----KLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFE 167 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777776543221 12222223333333444455556565544578999999999999999999988777
Q ss_pred hhHH
Q 005569 450 ASQE 453 (690)
Q Consensus 450 As~E 453 (690)
.+.+
T Consensus 168 ~is~ 171 (216)
T cd07627 168 EVSE 171 (216)
T ss_pred HHHH
Confidence 6643
No 187
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.21 E-value=9.6e+02 Score=29.44 Aligned_cols=64 Identities=31% Similarity=0.432 Sum_probs=37.9
Q ss_pred hccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhc
Q 005569 402 LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (690)
Q Consensus 402 LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAE 480 (690)
|-..+.++.+|+..||... +-|+.|--.+..+..-| -++.-|.++.-+.|-.-+|||.|..+=|
T Consensus 256 l~~a~~q~~ee~~~~re~~----~tv~~LqeE~e~Lqskl-----------~~~~~l~~~~~~LELeN~~l~tkL~rwE 319 (716)
T KOG4593|consen 256 LERALSQLREELATLRENR----ETVGLLQEELEGLQSKL-----------GRLEKLQSTLLGLELENEDLLTKLQRWE 319 (716)
T ss_pred HHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHH-----------HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4456778888888888753 34444433333332222 2345566777777777777777776644
No 188
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=34.17 E-value=4.3e+02 Score=33.95 Aligned_cols=206 Identities=24% Similarity=0.289 Sum_probs=107.5
Q ss_pred HHHHHhhHHHHHHhhhhc--cchhH----HHhhhcHHhhcccceEEEeecccccchhHHhhhHHHHHHHHhhhhHHHHHh
Q 005569 255 AFRMEEAAEVVWGRFLEA--ENSAE----VLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKL 328 (690)
Q Consensus 255 ~~~mEE~ae~v~~R~~eA--eNAsE----vL~GiSKeL~grlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~Kl 328 (690)
.-||=+...-|-+-++.| +|-.. +|--+..+ =|.+-||.-...+ --.-=+.|+|+-.+..+|+-|
T Consensus 963 KnFLne~ViPvLEeCl~aL~~nn~~~L~kaLA~FP~d----~qWSaFNs~EA~~-----AK~QMDaIKqmIekKv~L~~L 1033 (1439)
T PF12252_consen 963 KNFLNEKVIPVLEECLNALRENNMDMLQKALAAFPSD----KQWSAFNSEEARQ-----AKAQMDAIKQMIEKKVVLQAL 1033 (1439)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCHHHHHHHHHhCCCc----ccchhcCcHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777765 22222 22222221 2566676543322 111225667777777777766
Q ss_pred hhc--------------------Cchhhh----hHHHHHHHHHHHHHHhhhhhhhhh-hchhhhHHHH-hhhHHHHHHHH
Q 005569 329 EST--------------------KNSEVL----TMKEKVKSLEEQLKESEIRLQNAN-ACFQTSQEQL-NEMDNFIESLK 382 (690)
Q Consensus 329 e~~--------------------~~sE~~----tL~eKV~sLEkqLrESe~QL~~a~-AS~ea~~eqi-sdMEnvIedLK 382 (690)
..| ++.|.. .|++++++.-..|.- ||+|. ..+-...+++ ..++.+|.++.
T Consensus 1034 ~qCqdALeKqnIa~AL~ALn~IPSdKEms~Is~eLReQIq~~KQ~Les----LQRAV~TPVvtd~eKvr~rYe~LI~~iT 1109 (1439)
T PF12252_consen 1034 TQCQDALEKQNIAGALQALNNIPSDKEMSKISSELREQIQSVKQDLES----LQRAVVTPVVTDAEKVRVRYETLITDIT 1109 (1439)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHHH----HHHhhcccccccHHHHHHHHHHHHHHHH
Confidence 544 223322 355566555544221 23222 2222223444 37888888888
Q ss_pred Hhhhhhhhhhhh-HHHhhhhhccchhhhHHHhhhhccCC---CCCcch-----hhhHHHHHhhHHHHHHHhHhhhhhhHH
Q 005569 383 ESLYGAESRAES-AEEKVTQLTDTNLELSEEINFLKGNN---DSNTKK-----VGILENQLRDLEIQLQQAKVSSEASQE 453 (690)
Q Consensus 383 ekv~kAESRAe~-AE~kc~~LteTN~ELneEL~fLk~~~---~~~s~k-----v~~LEkqLrEsd~QLqhAkAS~eAs~E 453 (690)
-+|..-|.-... ...==+-++.-| -|.+||..||... .+.++| ++-||+||+..+.-|- .|.+..+-+
T Consensus 1110 KrIt~LEk~k~~~l~~ikK~ia~ln-nlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~--dAyl~eitK 1186 (1439)
T PF12252_consen 1110 KRITDLEKAKLDNLDSIKKAIANLN-NLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLY--DAYLVEITK 1186 (1439)
T ss_pred HHHHHHhccccccHHHHHHHHHHHH-HHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhH--HHHHHHHHH
Confidence 888766643211 111111111111 3789999998631 111344 4679999999988774 556666666
Q ss_pred hhhhHHHHHHhHHHHHHHHhhhhhhh
Q 005569 454 QQSMLYSAIWDMETLIEDLKSKVSKA 479 (690)
Q Consensus 454 qQ~MLysti~DME~lIeDLKsKvsKA 479 (690)
|=+-|-.++.-= +-|+|++.++-
T Consensus 1187 qIsaLe~e~PKn---ltdvK~missf 1209 (1439)
T PF12252_consen 1187 QISALEKEKPKN---LTDVKSMISSF 1209 (1439)
T ss_pred HHHHHHhhCCCc---hhhHHHHHHHH
Confidence 766666533211 11555555543
No 189
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=34.09 E-value=6.1e+02 Score=27.11 Aligned_cols=100 Identities=16% Similarity=0.163 Sum_probs=51.8
Q ss_pred hhhHHHHHhhHHHHHHhhhhccchhHHHhhhcHHhhcccceEEEeecccccchhHHhhhHHHHHHHHhhhhHHHHHhhhc
Q 005569 252 EQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST 331 (690)
Q Consensus 252 Eqe~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL~grlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~Kle~~ 331 (690)
.+-.-|+++....+-.|+-+|+.+-.-|.-=..-+ ...+...--..+-+.|+..+.+++++-..+...-..
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~---------d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~ 239 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVF---------DPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPE 239 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 44456666666666666666665544332111000 001111111122333333333333333333222222
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 005569 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (690)
Q Consensus 332 ~~sE~~tL~eKV~sLEkqLrESe~QL~~a 360 (690)
..|++..++.++..|++|+.+-..++...
T Consensus 240 ~~P~v~~l~~~i~~l~~~i~~e~~~i~~~ 268 (362)
T TIGR01010 240 QNPQVPSLQARIKSLRKQIDEQRNQLSGG 268 (362)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 47999999999999999999877666543
No 190
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=33.68 E-value=2e+02 Score=28.94 Aligned_cols=59 Identities=27% Similarity=0.277 Sum_probs=48.2
Q ss_pred HHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhH
Q 005569 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ 368 (690)
Q Consensus 306 eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~ 368 (690)
.+-...+.+-..|..+...++|+.+.. .+..+|+..+++.+++.+...+.|+...+.+-
T Consensus 112 ~~~~~~~~~~~~L~k~~~~~~Kl~~~~----~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is 170 (216)
T cd07627 112 KLWQYWQSAESELSKKKAQLEKLKRQG----KTQQEKLNSLLSELEEAERRASELKKEFEEVS 170 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788888889999999998742 26689999999999999999999998776654
No 191
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=33.48 E-value=7.2e+02 Score=29.98 Aligned_cols=122 Identities=19% Similarity=0.202 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCC
Q 005569 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 420 (690)
Q Consensus 341 eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~ 420 (690)
.+...++..+.....+|++..++.+....++..+..-...|.+.+. +-...+.++..|.....-..+++..|+.
T Consensus 175 k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~~~~~i~~l~~-- 248 (670)
T KOG0239|consen 175 KESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG----NYADLRRNIKPLEGLESTIKKKIQALQQ-- 248 (670)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----hhhhHHHhhhhhhhhhhHHHHHHHHHHH--
Confidence 4445566666666666777776655544444444444444444443 2223344444444444444444444444
Q ss_pred CCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhh
Q 005569 421 DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKV 476 (690)
Q Consensus 421 ~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKv 476 (690)
++.-|++.+++++.+..+.... .++........+.+++...+.|+.+.
T Consensus 249 -----~l~~l~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~L~~~~~~l~~~~ 296 (670)
T KOG0239|consen 249 -----ELEELKAELKELNDQVSLLTRE---VQEALKESNTLQSDLESLEENLVEKK 296 (670)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444443322 23333333334666676777776666
No 192
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=33.41 E-value=47 Score=23.98 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.6
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 005569 335 EVLTMKEKVKSLEEQLKE 352 (690)
Q Consensus 335 E~~tL~eKV~sLEkqLrE 352 (690)
|+..|+.++..||+||.+
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 677899999999999975
No 193
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=32.80 E-value=40 Score=36.27 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhhhhhhhhhhhHHHhh
Q 005569 374 MDNFIESLKESLYGAESRAESAEEKV 399 (690)
Q Consensus 374 MEnvIedLKekv~kAESRAe~AE~kc 399 (690)
++.+|+.+=+-+-.++.+.++-+...
T Consensus 137 ld~iVd~~ad~lE~~~~~ld~ls~~i 162 (316)
T PRK11085 137 FETKIEQLADEIENIYSDLEKLSRVI 162 (316)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 67777777777777777777666554
No 194
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=32.76 E-value=22 Score=32.31 Aligned_cols=65 Identities=22% Similarity=0.353 Sum_probs=53.1
Q ss_pred HHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhh---HHHHHHHHHHHHHhhHhhhhhhhhcccCCCcc
Q 005569 118 TIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGS---LKESQEHVSELKMQSAKFQRVLSYFIHGNNDE 188 (690)
Q Consensus 118 tlq~~I~~~~~ki~s~~hl~e~f~~m~~~~~KL~d~~~s---LkQ~qe~i~eIk~Qsa~Fqr~~~~~~~~~~~~ 188 (690)
++..+|....+++++|.+. ++.|+.||+..+-| =+.+.+....|+.+..+.++-+..+++.|..+
T Consensus 2 ~V~~eId~lEekl~~cr~~------le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK~ 69 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRR------LEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRKS 69 (85)
T ss_pred cHHHHHhhHHHHHHHHHHH------HHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhhh
Confidence 3577899999999999983 47789999986544 46678899999999999999998888776654
No 195
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=32.37 E-value=45 Score=24.07 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.5
Q ss_pred hhhhhhhhHHHHHHHhHhHH
Q 005569 502 NKQSFMRDKIKILESSLNRA 521 (690)
Q Consensus 502 eELsFLR~R~e~LE~sL~~A 521 (690)
+|++-||.|+..||..|...
T Consensus 1 ~E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSEC 20 (23)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999754
No 196
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=32.26 E-value=76 Score=37.44 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=22.6
Q ss_pred ecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhh
Q 005569 493 LSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEV 532 (690)
Q Consensus 493 LSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDI 532 (690)
+.+..-.-.+.+.-++.|++.++..+.+.+....+.++++
T Consensus 220 ~p~~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~ 259 (759)
T PF01496_consen 220 LPEDEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKY 259 (759)
T ss_dssp --GGGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566777777777777777766665554444443
No 197
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=31.97 E-value=2.4e+02 Score=26.60 Aligned_cols=42 Identities=36% Similarity=0.373 Sum_probs=26.9
Q ss_pred HHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHH
Q 005569 370 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411 (690)
Q Consensus 370 qisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELne 411 (690)
.+..+.+-++.|++++..++.....++.++..|+..+-.+..
T Consensus 67 d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 67 DIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777777766655444433
No 198
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=31.87 E-value=1.4e+02 Score=27.04 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=59.7
Q ss_pred hHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHH
Q 005569 436 DLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515 (690)
Q Consensus 436 Esd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE 515 (690)
+....-.....--+....++..|..++--....|.+-..|...|.-+|+.....+.-....=..|..+|+.|+++...++
T Consensus 22 e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e 101 (126)
T PF13863_consen 22 EIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLE 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444445566778888888888899999999999999999988877766555555566666777777766666
Q ss_pred HhHhH
Q 005569 516 SSLNR 520 (690)
Q Consensus 516 ~sL~~ 520 (690)
..+.+
T Consensus 102 ~~l~~ 106 (126)
T PF13863_consen 102 EKLEE 106 (126)
T ss_pred HHHHH
Confidence 65543
No 199
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=31.70 E-value=1.1e+02 Score=26.77 Aligned_cols=60 Identities=28% Similarity=0.345 Sum_probs=41.1
Q ss_pred hhHHHHHhhHHHHHHHhHhhhhhhH-------HhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccc
Q 005569 428 GILENQLRDLEIQLQQAKVSSEASQ-------EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVE 487 (690)
Q Consensus 428 ~~LEkqLrEsd~QLqhAkAS~eAs~-------EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE 487 (690)
++|++.|+|=|-|..+-..--+.-. ..-..|+..+.+.|.-|.+|+.++.+++...++.+
T Consensus 1 ~sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 1 SSLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888887777665444322 23356778888888888888888887776655443
No 200
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=31.66 E-value=3.2e+02 Score=24.91 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=56.1
Q ss_pred HHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceee-------------ecccc------
Q 005569 437 LEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIV-------------LSEDN------ 497 (690)
Q Consensus 437 sd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCil-------------LSetN------ 497 (690)
+..|+++-+.-.+..+.+...|..++.+.+..++-|+. + ++. +.|-+ +.++|
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~-l-~~~-------~~~~~lv~lg~~~~v~~~v~~~~~v~v~i 74 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAIETLED-L-KGA-------EGKETLVPVGAGSFVKAKVKDTDKVLVSI 74 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-ccc-------CCCeEEEEcCCCeEEEEEeCCCCEEEEEc
Confidence 44566777777888888999999999999999888732 2 211 22433 23555
Q ss_pred -------hhhhhhhhhhhhHHHHHHHhHhHHh
Q 005569 498 -------FELKNKQSFMRDKIKILESSLNRAN 522 (690)
Q Consensus 498 -------~ELneELsFLR~R~e~LE~sL~~An 522 (690)
..+.+=..||..|++.|+.++..-+
T Consensus 75 G~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~ 106 (126)
T TIGR00293 75 GSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQ 106 (126)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999998877654
No 201
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.30 E-value=6.1e+02 Score=30.13 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=10.1
Q ss_pred hhhhHHHHHHhHHHHHHHHhhh
Q 005569 454 QQSMLYSAIWDMETLIEDLKSK 475 (690)
Q Consensus 454 qQ~MLysti~DME~lIeDLKsK 475 (690)
+..-+...=..|..++.+++.|
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~K 466 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQK 466 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555444
No 202
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=31.14 E-value=7.7e+02 Score=27.40 Aligned_cols=29 Identities=7% Similarity=0.257 Sum_probs=19.9
Q ss_pred HHHhHHHHHHHHhhhhhhhcccccccccc
Q 005569 461 AIWDMETLIEDLKSKVSKAESKTESVEEQ 489 (690)
Q Consensus 461 ti~DME~lIeDLKsKvsKAEsraesaE~k 489 (690)
...+++.-|..|++....|+++...++..
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~ 265 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKS 265 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 56677777777777777777766665444
No 203
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=30.78 E-value=2.7e+02 Score=28.27 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=42.0
Q ss_pred HhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhH
Q 005569 307 LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQ 368 (690)
Q Consensus 307 LkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~ 368 (690)
.-..++.+-..|..+...+.|++....+ +|+..+++.+++.+.....|...-+.+.
T Consensus 121 a~~~~q~a~~~l~kkr~~~~Kl~~~~~~------~K~~~~~~ev~~~e~~~~~a~~~fe~is 176 (224)
T cd07623 121 VWQNWQNAQQTLTKKREAKAKLELSGRT------DKLDQAQQEIKEWEAKVDRGQKEFEEIS 176 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666677777888888888875443 6999999999999988888887655543
No 204
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.59 E-value=1.2e+02 Score=26.79 Aligned_cols=70 Identities=21% Similarity=0.362 Sum_probs=41.6
Q ss_pred HHHHHHhhhhhh---hhHHHHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhh
Q 005569 95 ALVYDLLFGILD---SELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQS 171 (690)
Q Consensus 95 aleFDlL~gILD---SEVrELe~~~~tlq~~I~~~~~ki~s~~hl~e~f~~m~~~~~KL~d~~~sLkQ~qe~i~eIk~Qs 171 (690)
+.-||+++.|-+ .+.+.++.-++.|..-|..|+.-|.+- -|...+..+-+++|..++.|.
T Consensus 6 P~i~~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~l-----------------pgi~~s~eeq~~~i~~Le~~i 68 (83)
T PF07544_consen 6 PLIFDILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIREL-----------------PGIDRSVEEQEEEIEELEEQI 68 (83)
T ss_pred chHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC-----------------CCccCCHHHHHHHHHHHHHHH
Confidence 355777777765 367888888888888777777755433 334444444444444444444
Q ss_pred Hhhhhhhhhc
Q 005569 172 AKFQRVLSYF 181 (690)
Q Consensus 172 a~Fqr~~~~~ 181 (690)
++.+.+|..|
T Consensus 69 ~~k~~~L~~~ 78 (83)
T PF07544_consen 69 RKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 205
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=30.50 E-value=4.4e+02 Score=31.07 Aligned_cols=105 Identities=22% Similarity=0.213 Sum_probs=60.7
Q ss_pred cHHhhcccceEEE-eecccccchhHHhhhHHHHHHHHhhhhHHHH-HhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhh
Q 005569 283 SKEMLGRFQIVQF-NLNGSLQRESELKSKLGDFIEQLKAKDMVLQ-KLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNA 360 (690)
Q Consensus 283 SKeL~grlqi~QF-~Lngs~~RE~eLkSKLe~~~~ql~~k~~~l~-Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a 360 (690)
+.++.|.+....- ....--.||..+++--..-|.+|-......+ |.-. --.|...|..+....|+...-..-+|..+
T Consensus 389 ~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt~qlQ~adSKa~~-f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a 467 (518)
T PF10212_consen 389 PTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELTSQLQHADSKAVH-FYAECRALQKRLESAEKEKESLEEELKEA 467 (518)
T ss_pred cccccccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554433211 1344567888888877777777764332222 2222 23577777777776666666555555555
Q ss_pred hhchhh-----------hHHHHhhhHHHHHHHHHhhhhh
Q 005569 361 NACFQT-----------SQEQLNEMDNFIESLKESLYGA 388 (690)
Q Consensus 361 ~AS~ea-----------~~eqisdMEnvIedLKekv~kA 388 (690)
.-.... +++||+.|=.-+-.|-+++.+.
T Consensus 468 ~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q 506 (518)
T PF10212_consen 468 NQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQ 506 (518)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 544332 3457778876666777766654
No 206
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=30.29 E-value=6.5e+02 Score=26.29 Aligned_cols=185 Identities=13% Similarity=0.132 Sum_probs=96.2
Q ss_pred CchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHH-----hhhhhhhhh------------hh
Q 005569 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKE-----SLYGAESRA------------ES 394 (690)
Q Consensus 332 ~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKe-----kv~kAESRA------------e~ 394 (690)
+++.|-.....|..||.|||..--++......-...-.-+.++-..+..|=. .+++|=+.. ..
T Consensus 20 ~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~~q 99 (234)
T cd07664 20 SDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQ 99 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999998777554332211111111222222222211 111111111 12
Q ss_pred HHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhh
Q 005569 395 AEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS 474 (690)
Q Consensus 395 AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKs 474 (690)
|..=+-.|.+|=-+--.=++..|..= ..|+. .-.+.++|......-.++..-|..+.+ ..=|..++.
T Consensus 100 a~~d~~~l~e~L~eYiR~i~svK~~f---~~R~k--------~~~~~~~a~~~L~kkr~~~~Kl~~~~k--~dK~~~~~~ 166 (234)
T cd07664 100 AFADFYLFSELLGDYIRLIAAVKGVF---DQRMK--------CWQKWQDAQVTLQKKREAEAKLQYANK--PDKLQQAKD 166 (234)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHH---HHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhcCc--hhHHHHHHH
Confidence 22223334444333333334444321 22332 224445555555555555444432323 245667888
Q ss_pred hhhhhcccccccccceeeecccchhhhhhh-hhhhhHHHHHHHhHhHHhHhhhhhhhhh
Q 005569 475 KVSKAESKTESVEEQCIVLSEDNFELKNKQ-SFMRDKIKILESSLNRANIEKAASAKEV 532 (690)
Q Consensus 475 KvsKAEsraesaE~kCilLSetN~ELneEL-sFLR~R~e~LE~sL~~An~~K~stAKDI 532 (690)
-|..||.|.+.|+...=-+|+++ ..|| .|=+.|+.-+-+.++.==+.=+.++|.|
T Consensus 167 ev~~~e~~~~~a~~~fe~Is~~~---k~El~rFe~er~~dfk~~l~~fles~ie~qke~ 222 (234)
T cd07664 167 EIKEWEAKVQQGERDFEQISKTI---RKEVGRFEKERVKDFKTVIIKYLESLVQTQQQL 222 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887776666664 3444 3557777776666665444444455444
No 207
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=29.93 E-value=3.6e+02 Score=30.57 Aligned_cols=53 Identities=32% Similarity=0.405 Sum_probs=34.9
Q ss_pred chhhhHHHHHhhHHHHHHHhH--------hhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhc
Q 005569 425 KKVGILENQLRDLEIQLQQAK--------VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 480 (690)
Q Consensus 425 ~kv~~LEkqLrEsd~QLqhAk--------AS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAE 480 (690)
.|.+.||.||.++ +||+++. |+.|.-.+=| -|-=.+|++.+||-.+.+++|-|
T Consensus 258 ~R~erLEeqlNd~-~elHq~Ei~~LKqeLa~~EEK~~Yq--s~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 258 YRYERLEEQLNDL-TELHQNEIYNLKQELASMEEKMAYQ--SYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHH
Confidence 3888899999888 7766553 3333333333 25556777777777777777765
No 208
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=29.89 E-value=1.8e+02 Score=35.16 Aligned_cols=81 Identities=27% Similarity=0.350 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhh
Q 005569 372 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 451 (690)
Q Consensus 372 sdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs 451 (690)
.+++.+|++|-..-...|.+.+.++..-..+....-+|.++...|+.. |...++ +|-
T Consensus 516 ~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~------~~~~~~-----------------~~~ 572 (782)
T PRK00409 516 EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE------EDKLLE-----------------EAE 572 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHH-----------------HHH
Confidence 488999999999888888888888887777777666666666666542 333333 344
Q ss_pred HHhhhhHHHHHHhHHHHHHHHhhh
Q 005569 452 QEQQSMLYSAIWDMETLIEDLKSK 475 (690)
Q Consensus 452 ~EqQ~MLysti~DME~lIeDLKsK 475 (690)
+|-+.++..+=...+.+|++||.+
T Consensus 573 ~~a~~~l~~a~~~~~~~i~~lk~~ 596 (782)
T PRK00409 573 KEAQQAIKEAKKEADEIIKELRQL 596 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666778899999864
No 209
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=29.67 E-value=6.6e+02 Score=26.13 Aligned_cols=193 Identities=15% Similarity=0.163 Sum_probs=102.4
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhh
Q 005569 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEA 450 (690)
Q Consensus 371 isdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eA 450 (690)
..||+.+|.-++..+..+|.+....-.||..|..+|.++..=+.-+-..- +.-.+.-++ +-+.+.+.+..
T Consensus 4 ~~d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i---~~~i~e~~~-------~~~~~~~~i~~ 73 (207)
T PF05010_consen 4 QKDLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTI---AQMIEEKQK-------QKELSEAEIQK 73 (207)
T ss_pred HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHh-------hHHhHHHHHHH
Confidence 35899999999999999999999999999999999998876554443311 111222222 22333333333
Q ss_pred hHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHH----HHhHhHHhHhhh
Q 005569 451 SQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL----ESSLNRANIEKA 526 (690)
Q Consensus 451 s~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~L----E~sL~~An~~K~ 526 (690)
...--.-+|.-+.-||.-.-||-.+|-|...-.+.-=.+=-.|=.+--+.-.-+.-...|...| |..|..||+.-.
T Consensus 74 ~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~ 153 (207)
T PF05010_consen 74 LLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIA 153 (207)
T ss_pred HHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334555555566666666655555443322211110011111122333333334444444 445666665433
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 005569 527 ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (690)
Q Consensus 527 stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~sL~keNkiLv~K~k~ 573 (690)
.--+.-.-.+..+.-.+-+.=+...-|..+|-.-+++|.=|..=|-+
T Consensus 154 ~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDe 200 (207)
T PF05010_consen 154 QVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDE 200 (207)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222223333333333333444445555677777788777766653
No 210
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.47 E-value=7.5e+02 Score=26.72 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhchhhhH-----------HHHhhhHHHHHHHHH
Q 005569 340 KEKVKSLEEQLKESEIRLQNANACFQTSQ-----------EQLNEMDNFIESLKE 383 (690)
Q Consensus 340 ~eKV~sLEkqLrESe~QL~~a~AS~ea~~-----------eqisdMEnvIedLKe 383 (690)
..|+..|+.|+...+..+..+..-..... -||..+.+=|..||+
T Consensus 80 e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~ 134 (258)
T PF15397_consen 80 ESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKD 134 (258)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34788888888888888887776544421 146666666666654
No 211
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=29.34 E-value=7.2e+02 Score=26.48 Aligned_cols=65 Identities=20% Similarity=0.383 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhh
Q 005569 107 SELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSY 180 (690)
Q Consensus 107 SEVrELe~~~~tlq~~I~~~~~ki~s~~hl~e~f~~m~~~~~KL~d~~~sLkQ~qe~i~eIk~Qsa~Fqr~~~~ 180 (690)
+.+...|.|+-.+-. |-+.+.++ +.|.-+....+++.+....|.....-+.+|| +|..|.+++..
T Consensus 139 ~~L~~~E~f~~~l~~-ip~~~~rl-------~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~-~S~~l~~lL~~ 203 (370)
T PF02181_consen 139 ATLGPAEQFLLELSK-IPRLKERL-------EALLFKSEFEEQLEELKEKLEKLEAACEELR-ESKSLRRLLEI 203 (370)
T ss_dssp TTB-HHHHHHHHHTT-STTHHHHH-------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHH
T ss_pred HhhccHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHH
Confidence 556667777777765 77766666 3444445667888888888888888888885 78899998865
No 212
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=28.51 E-value=1e+03 Score=27.98 Aligned_cols=159 Identities=24% Similarity=0.279 Sum_probs=96.5
Q ss_pred hhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHH-HH-----HHHhhhhhhhcc
Q 005569 408 ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMET-LI-----EDLKSKVSKAES 481 (690)
Q Consensus 408 ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~-lI-----eDLKsKvsKAEs 481 (690)
++.+||...|.-.+...+|-.+| +....+..|||--.-|+-.+...++=|..-..-++. .+ ++...+.-+-..
T Consensus 206 ~~qeel~~~~~~~~d~~EkE~Ll-~EIq~Lk~qL~~~~~ss~s~~~~~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~ 284 (488)
T PF06548_consen 206 RVQEELEEYRNFSFDMGEKEVLL-EEIQDLKSQLQYYTDSSMSTDRLRSSLLQRSYQLRPSAIPESGDENAEEELEQERQ 284 (488)
T ss_pred HHHHHHHhccccccCcchHHHHH-HHHHHHHHHHHhccccccccccccccHHhhhhccCCCCCcccCCCchhhhHHHHHH
Confidence 56778775554322234554444 456667778875444444444444444331112222 11 223333334445
Q ss_pred cccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhH--------------H--------------------------
Q 005569 482 KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR--------------A-------------------------- 521 (690)
Q Consensus 482 raesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~--------------A-------------------------- 521 (690)
|-.-+|++-|-||| ||.-||.--|.+++.++.-|+. |
T Consensus 285 ~wtE~ES~WIsLte---eLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr 361 (488)
T PF06548_consen 285 RWTEAESKWISLTE---ELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHR 361 (488)
T ss_pred HHHHHHhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778899999997 7888888888888877765532 1
Q ss_pred ------hHhhhhhhhhhhh---hHHHHHHHHHHHH---HHHHHHHHHhhhhhhhhhHHHHHHhhc
Q 005569 522 ------NIEKAASAKEVNH---RTKLMMEMVMQLA---TQRELIQKQVYSLTSENKLLVEKLQYS 574 (690)
Q Consensus 522 ------n~~K~stAKDIg~---rtK~i~dlV~qLA---~ERERL~~Qi~sL~keNkiLv~K~k~~ 574 (690)
.++|.+.||= |+ -+++|..|-..|+ .||||=. .-|-++||-|-..|+.|
T Consensus 362 ~i~egI~dVKkaAakA-g~kG~~~rF~~slaaEiSalr~erEkEr---~~l~~eNk~L~~QLrDT 422 (488)
T PF06548_consen 362 RIMEGIEDVKKAAAKA-GVKGAESRFINSLAAEISALRAEREKER---RFLKDENKGLQIQLRDT 422 (488)
T ss_pred HHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHhH
Confidence 2455555554 44 4789999988775 3555433 34678999999999976
No 213
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=28.41 E-value=79 Score=28.25 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=22.6
Q ss_pred eeccccccchhHHHHHHHHHHHHHHHHHHhcc
Q 005569 655 RVQDAGLRNRKHVFVAVFVALLSVAAIYLFNK 686 (690)
Q Consensus 655 RrIDag~Ln~KhifmAvlvlL~s~~avyl~~~ 686 (690)
|..-++ -||++++.+++++++.++.+|+|-|
T Consensus 40 ~~~~~~-~~~~~~ii~ii~v~ii~~l~flYLK 70 (72)
T PF12575_consen 40 NKNNKN-FNWIILIISIIFVLIIVLLTFLYLK 70 (72)
T ss_pred cCCCCc-chHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455 7899988888888887777777754
No 214
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=27.54 E-value=1.5e+03 Score=29.46 Aligned_cols=164 Identities=12% Similarity=0.196 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhh-hhhhhhhchhhhHHHHhhhHHHHHHHHHhhhh
Q 005569 309 SKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEI-RLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (690)
Q Consensus 309 SKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~-QL~~a~AS~ea~~eqisdMEnvIedLKekv~k 387 (690)
..|.++++++..-...++.++.. .+.+..+....+...- .+.....-.-..+.++.....=+..+...+..
T Consensus 223 ~~l~e~~~~~~~~~~~le~l~~~--------~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1353)
T TIGR02680 223 TDVADALEQLDEYRDELERLEAL--------ERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELET 294 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHH
Q 005569 388 AESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMET 467 (690)
Q Consensus 388 AESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~ 467 (690)
++.+...++.++..|...=-+|..++.-|+++. +--..++|.+...|+.......+...++=.-=.+...+.+.
T Consensus 295 ~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~------a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~ 368 (1353)
T TIGR02680 295 AREEERELDARTEALEREADALRTRLEALQGSP------AYQDAEELERARADAEALQAAAADARQAIREAESRLEEERR 368 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhhccccccc
Q 005569 468 LIEDLKSKVSKAESKTESV 486 (690)
Q Consensus 468 lIeDLKsKvsKAEsraesa 486 (690)
-++++...+..++...+.+
T Consensus 369 ~~~~~~~r~~~~~~~l~~~ 387 (1353)
T TIGR02680 369 RLDEEAGRLDDAERELRAA 387 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 215
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=27.06 E-value=1.3e+03 Score=28.74 Aligned_cols=80 Identities=28% Similarity=0.331 Sum_probs=54.6
Q ss_pred hhHHHhhhhhcchhhhHH----HHHhhHHHHHHhhhhccchhHHHh----hhcHHhhcccceEEEeec---ccccc-hhH
Q 005569 239 QNEEQLKLKLHHTEQVAF----RMEEAAEVVWGRFLEAENSAEVLM----GISKEMLGRFQIVQFNLN---GSLQR-ESE 306 (690)
Q Consensus 239 ~~eEeLklKlh~~Eqe~~----~mEE~ae~v~~R~~eAeNAsEvL~----GiSKeL~grlqi~QF~Ln---gs~~R-E~e 306 (690)
+-+++|+++|..+||-.. +|-++++++-.|+=+|||-.|-|. .+..-|+..+-.+|-.|+ .+..| |..
T Consensus 587 qqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~ 666 (961)
T KOG4673|consen 587 QQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERS 666 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 467899999999999875 466899999999999999888764 244555555555554443 23344 455
Q ss_pred HhhhHHHHHHHH
Q 005569 307 LKSKLGDFIEQL 318 (690)
Q Consensus 307 LkSKLe~~~~ql 318 (690)
|-.||.++-.+|
T Consensus 667 l~~rL~dSQtll 678 (961)
T KOG4673|consen 667 LNERLSDSQTLL 678 (961)
T ss_pred HHHhhhhHHHHH
Confidence 555555554444
No 216
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=27.01 E-value=1.3e+03 Score=28.73 Aligned_cols=116 Identities=22% Similarity=0.308 Sum_probs=70.8
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhh
Q 005569 371 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEA 450 (690)
Q Consensus 371 isdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eA 450 (690)
|--|-......|+.+++-.++++.-|+|.--+-.||-++-..| .|.+.|+ -+-
T Consensus 525 I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dl-----------qk~nrlk----------------Qde 577 (961)
T KOG4673|consen 525 IEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDL-----------QKENRLK----------------QDE 577 (961)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhH-----------HHHhhhh----------------hhH
Confidence 5566666677777777777777777777776666665544311 1222111 122
Q ss_pred hHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhh
Q 005569 451 SQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAK 530 (690)
Q Consensus 451 s~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAK 530 (690)
..++|.||--.+ +||..+.+|+|--|---|+ .||+-++.|-.-|+.|+..--....
T Consensus 578 ar~~~~~lvqqv-------~dLR~~L~~~Eq~aarrEd-----------------~~R~Ei~~LqrRlqaaE~R~eel~q 633 (961)
T KOG4673|consen 578 ARERESMLVQQV-------EDLRQTLSKKEQQAARRED-----------------MFRGEIEDLQRRLQAAERRCEELIQ 633 (961)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677776543 5677777777766655543 4667677666667767666666666
Q ss_pred hhhhhHH
Q 005569 531 EVNHRTK 537 (690)
Q Consensus 531 DIg~rtK 537 (690)
.+|-.|.
T Consensus 634 ~v~~TTr 640 (961)
T KOG4673|consen 634 QVPETTR 640 (961)
T ss_pred hcccccc
Confidence 6665554
No 217
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.83 E-value=3.5e+02 Score=29.36 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=32.4
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhh
Q 005569 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (690)
Q Consensus 333 ~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~k 387 (690)
..|+-.+.+++...|+.++|..-++.-.++-....+.+-+.|..-|..+|+||-+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666677766666666544444333444455666666666666654
No 218
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.21 E-value=4.2e+02 Score=25.32 Aligned_cols=98 Identities=28% Similarity=0.396 Sum_probs=53.9
Q ss_pred hhcHHhhcccceEEEeecccccchhHHhhhHHHHHHHHhh-hhHHHHHhhhc--CchhhhhHHHHHHHHHHHHHHhhhhh
Q 005569 281 GISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLEST--KNSEVLTMKEKVKSLEEQLKESEIRL 357 (690)
Q Consensus 281 GiSKeL~grlqi~QF~Lngs~~RE~eLkSKLe~~~~ql~~-k~~~l~Kle~~--~~sE~~tL~eKV~sLEkqLrESe~QL 357 (690)
|.|-.++.||+ +-..+||+|+-+ |.+-+.+|.+ ++.+-+-+-.. .+.++......+..|+.++.+.+.+.
T Consensus 12 ~~~~~~ve~L~------s~lr~~E~E~~~-l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 12 GPSVQLVERLQ------SQLRRLEGELAS-LQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRY 84 (120)
T ss_pred CchHHHHHHHH------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554 234567777643 4455555542 22222222211 34455566667777778887777766
Q ss_pred hhhhhchhhhHHHHhhhHHHHHHHHHhh
Q 005569 358 QNANACFQTSQEQLNEMDNFIESLKESL 385 (690)
Q Consensus 358 ~~a~AS~ea~~eqisdMEnvIedLKekv 385 (690)
+.+----+.--+++.++.+=|.|||+-+
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 6554443333455667777777777654
No 219
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=26.18 E-value=2.4e+02 Score=28.86 Aligned_cols=96 Identities=23% Similarity=0.274 Sum_probs=54.6
Q ss_pred chhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhh-
Q 005569 425 KKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNK- 503 (690)
Q Consensus 425 ~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneE- 503 (690)
--|+-||.+++|.+..++.-..|...++--=+.-..+..+-++-.+.|+.-|--|....++++ .+.....-||.+-
T Consensus 67 ~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~---~~a~~AQ~el~eK~ 143 (188)
T PF05335_consen 67 QIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAE---QVAEGAQQELAEKT 143 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 357778888888777666555555544333333333333444444444444444433333332 2333445667766
Q ss_pred --hhhhhhHHHHHHHhHhHHhH
Q 005569 504 --QSFMRDKIKILESSLNRANI 523 (690)
Q Consensus 504 --LsFLR~R~e~LE~sL~~An~ 523 (690)
|.=-|.||+.|...|+.|..
T Consensus 144 qLLeaAk~Rve~L~~QL~~Ar~ 165 (188)
T PF05335_consen 144 QLLEAAKRRVEELQRQLQAARA 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 66678999999999988754
No 220
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=26.00 E-value=84 Score=34.66 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=20.2
Q ss_pred HHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHH-------hhHHHHH
Q 005569 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQL-------RDLEIQL 441 (690)
Q Consensus 369 eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqL-------rEsd~QL 441 (690)
+.++.||.-+++|-+.|....++.-..+..|.-++-+=-++..+|+.|.+.=-.....+..|+..+ ..-..++
T Consensus 35 eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssI 114 (326)
T PF04582_consen 35 ERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSI 114 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhH
Confidence 344455555555555555555555555555555555555555555555552111111222222222 2222333
Q ss_pred HHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhccccc
Q 005569 442 QQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTE 484 (690)
Q Consensus 442 qhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsrae 484 (690)
-....++.+..--=+-|++.++.|--=|-||+++|..-|+++-
T Consensus 115 S~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s 157 (326)
T PF04582_consen 115 SDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSS 157 (326)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCC
Confidence 3333344444444444555555555555555555555555443
No 221
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=25.85 E-value=7.5e+02 Score=30.69 Aligned_cols=207 Identities=23% Similarity=0.238 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCC
Q 005569 342 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 421 (690)
Q Consensus 342 KV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~ 421 (690)
.+..+|.++.+.-..+..|.......|-++..-...-++.-.+|.--|.|--||-.--+--.+-|.+|+.+|..=+..--
T Consensus 29 r~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lr 108 (916)
T KOG0249|consen 29 RVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLR 108 (916)
T ss_pred CcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhc
Confidence 44445555554444333333333333322322222333333444444555555555555567788888888876444322
Q ss_pred CCcchhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhh
Q 005569 422 SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 501 (690)
Q Consensus 422 ~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELn 501 (690)
-+-+|..+|-.+|--.+-+|+++-+ +++-.|--+-|-. ||. -..|||-+..+.|+---=|-..|-++|
T Consensus 109 q~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~q---r~~--------al~~aee~~~~~eer~~kl~~~~qe~n 176 (916)
T KOG0249|consen 109 QNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQ---RNA--------ALTKAEEHSGNIEERTRKLEEQLEELN 176 (916)
T ss_pred hhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHH---HHH--------HHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 2456777777777767777777666 4443332211110 111 123444444444444444556677888
Q ss_pred hhhhhhhhHHHHHH-----------HhHhHHhHhhhhhhhhhhhhHHH---HHHHHHHHHHHHHHHHHHhhhh
Q 005569 502 NKQSFMRDKIKILE-----------SSLNRANIEKAASAKEVNHRTKL---MMEMVMQLATQRELIQKQVYSL 560 (690)
Q Consensus 502 eELsFLR~R~e~LE-----------~sL~~An~~K~stAKDIg~rtK~---i~dlV~qLA~ERERL~~Qi~sL 560 (690)
-||--.|.|.+-=| .-|+-|-..-|++-.|+..=+.. ++.-|.++-.+++||..-+..|
T Consensus 177 aeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~L 249 (916)
T KOG0249|consen 177 AELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDL 249 (916)
T ss_pred HHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 88888888876433 34667777778888887754433 2333444444555554444443
No 222
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=25.62 E-value=2.1e+02 Score=30.38 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=30.1
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhhcccceeccccc
Q 005569 98 YDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKH 135 (690)
Q Consensus 98 FDlL~gILDSEVrELe~~~~tlq~~I~~~~~ki~s~~h 135 (690)
.+++++|+|.=|...-.++..|..++...+..+.....
T Consensus 138 ~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~ 175 (322)
T COG0598 138 DELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTT 175 (322)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 46888888888888888888888888887776655554
No 223
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.56 E-value=6e+02 Score=24.32 Aligned_cols=92 Identities=25% Similarity=0.318 Sum_probs=57.2
Q ss_pred hHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHh
Q 005569 367 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 446 (690)
Q Consensus 367 ~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkA 446 (690)
.+++|.-.|.=+..+|+.+.+.+..-+.+..-..-|+..|-++... ..++..|+.++.+++.+.+-+--
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~-----------~~~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRAL-----------KKEVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677777777777777777777777777666655332 34777788888888777766544
Q ss_pred hhhhhHHhhhhHHHHHHhHHHHH
Q 005569 447 SSEASQEQQSMLYSAIWDMETLI 469 (690)
Q Consensus 447 S~eAs~EqQ~MLysti~DME~lI 469 (690)
=-.--.|+=.=|..=|.||-.|.
T Consensus 90 llGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 90 LLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HhcchHHHHHHHHHHHHHHHHHH
Confidence 33333333344555555555443
No 224
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=25.46 E-value=3.7e+02 Score=21.81 Aligned_cols=66 Identities=26% Similarity=0.359 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhcc
Q 005569 337 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 404 (690)
Q Consensus 337 ~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~Lte 404 (690)
......+..|..||.+.+-.|..... ......+..+-.-...++..+...+.+.+.....|..|..
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~ 69 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLID 69 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999888844433 1122222222233444444444555555555555555533
No 225
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.81 E-value=3e+02 Score=24.79 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=47.4
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhcccceeccccchhhHHHH------HHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhh
Q 005569 102 FGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTI------MEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQ 175 (690)
Q Consensus 102 ~gILDSEVrELe~~~~tlq~~I~~~~~ki~s~~hl~e~f~~------m~~~~~KL~d~~~sLkQ~qe~i~eIk~Qsa~Fq 175 (690)
..-|++..+|.+...+.|..==. ...++ ...|++|+. ...+++++...+..++.+..++.++..+...++
T Consensus 22 ~~~l~~~~~E~~~v~~EL~~l~~--d~~vy--~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 22 RQKVEAQLNENKKALEELEKLAD--DAEVY--KLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC--cchHH--HHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888763111 11221 233667764 344566777777777777777777777777777
Q ss_pred hhhh
Q 005569 176 RVLS 179 (690)
Q Consensus 176 r~~~ 179 (690)
.-|.
T Consensus 98 ~~l~ 101 (105)
T cd00632 98 EKIQ 101 (105)
T ss_pred HHHH
Confidence 6553
No 226
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=24.63 E-value=8.1e+02 Score=28.17 Aligned_cols=40 Identities=8% Similarity=0.190 Sum_probs=21.0
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHh
Q 005569 333 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN 372 (690)
Q Consensus 333 ~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqis 372 (690)
+.++..+.++...+.+..|-...++.......+..+.++.
T Consensus 300 p~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~ 339 (563)
T TIGR00634 300 PERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELD 339 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 3445556666666666555555555555444444444433
No 227
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.62 E-value=8.2e+02 Score=26.15 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=63.6
Q ss_pred HhhcccceEEEeecccccchhHHhhh-----HHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 005569 285 EMLGRFQIVQFNLNGSLQRESELKSK-----LGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQN 359 (690)
Q Consensus 285 eL~grlqi~QF~Lngs~~RE~eLkSK-----Le~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~ 359 (690)
+..++=+++.....+.--..+-.-.+ .+..+.+++.+. +-+.+.. ...++..++.++...|..|.+...+-..
T Consensus 125 ~~~~~s~ii~I~~~~~dP~~A~~ian~l~~~~~~~i~~~~~~~-~~~a~~f-l~~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 125 DVDSVSGILTLNVTAFDAEEAQKINQRLLKEGERLINRLNERA-RKDTIAF-AENEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred eecCCCCeEEEEEEecCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444457777776665444322111 233344432222 2222222 3455666666666666666655443222
Q ss_pred hhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHH
Q 005569 360 ANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEI 439 (690)
Q Consensus 360 a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~ 439 (690)
.... .+....-..|.+|+..+..++.+. ..+++....+.-.+-.|..++..++.
T Consensus 203 ~d~~-----~~~~~~~~~i~~L~~~l~~~~~~l---------------------~~l~~~~~~~~P~v~~l~~~i~~l~~ 256 (362)
T TIGR01010 203 FDPK-----AQSSAQLSLISTLEGELIRVQAQL---------------------AQLRSITPEQNPQVPSLQARIKSLRK 256 (362)
T ss_pred cChH-----HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHhhCCCCCCchHHHHHHHHHHHH
Confidence 2111 111223334666665555444322 12222221123477777777777777
Q ss_pred HHHHhHhhh
Q 005569 440 QLQQAKVSS 448 (690)
Q Consensus 440 QLqhAkAS~ 448 (690)
|++....-+
T Consensus 257 ~i~~e~~~i 265 (362)
T TIGR01010 257 QIDEQRNQL 265 (362)
T ss_pred HHHHHHHHh
Confidence 776644433
No 228
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=24.59 E-value=9.4e+02 Score=28.66 Aligned_cols=72 Identities=13% Similarity=0.090 Sum_probs=44.8
Q ss_pred chhhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHH---HHHHHHhhhhhhhcccccccccceeeeccc
Q 005569 425 KKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME---TLIEDLKSKVSKAESKTESVEEQCIVLSED 496 (690)
Q Consensus 425 ~kv~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME---~lIeDLKsKvsKAEsraesaE~kCilLSet 496 (690)
-.+..|..++..++.|+...++.+.+..++|.-+..--+|-+ .+-+.|-.|...++-.......+.-|++.-
T Consensus 339 P~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~~~~~~rIid~A 413 (726)
T PRK09841 339 PTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDPA 413 (726)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeccCC
Confidence 366666666666777777777777777777766665555543 456666666665554444444566666554
No 229
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.53 E-value=4.7e+02 Score=28.28 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=28.3
Q ss_pred HHHhhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchh
Q 005569 369 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 407 (690)
Q Consensus 369 eqisdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ 407 (690)
...+.+..-.-.+.+.....+.+-+.+..+.-.|..||+
T Consensus 99 ~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 99 REYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 345666666667777777888888888888888888886
No 230
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=24.44 E-value=1.4e+03 Score=28.03 Aligned_cols=122 Identities=10% Similarity=0.229 Sum_probs=62.9
Q ss_pred cccccchhhhhH--HHHHHHHHhhcCCccccccCCCccchHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHHhhhhcc
Q 005569 52 DLAYSSEKLVNL--HVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDL---LFGILDSELREVERLLDTIHVEIVNV 126 (690)
Q Consensus 52 dlA~~SEKL~NL--~~L~M~l~~~~~d~E~~~~~~~~i~~~sveKaleFDl---L~gILDSEVrELe~~~~tlq~~I~~~ 126 (690)
|+...=+.++.| ..|..-+.-+-.+|-.+...+..-=.+-+.+.|..|. ++-.+-.-++++..-...++..+..
T Consensus 118 ~v~~~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~~- 196 (908)
T COG0419 118 DVNEKIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSE- 196 (908)
T ss_pred hHHHHHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 455555566654 6888888888888887766554432344555555555 3333444445555555555555550
Q ss_pred cceeccccchhhHHHHHHHhhhhhhhhHh------hHH--HHHHHHHHHHHhhHhhhhhhhhcc
Q 005569 127 HHKISSCKHLREVFTIMEKMEKKLHDCEG------SLK--ESQEHVSELKMQSAKFQRVLSYFI 182 (690)
Q Consensus 127 ~~ki~s~~hl~e~f~~m~~~~~KL~d~~~------sLk--Q~qe~i~eIk~Qsa~Fqr~~~~~~ 182 (690)
.++..-..+. .+++.+..... ..+ .+...+..++.+.+.++.....+.
T Consensus 197 -----~~e~~~~~~~---~~~~e~~~~~~l~e~~~~~~~~~l~~e~e~l~~~~~el~~~~~~~~ 252 (908)
T COG0419 197 -----LLEDIEDLLE---ALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLE 252 (908)
T ss_pred -----hhhhhHHHHH---HHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111011 12333333321 111 145566777777777776665544
No 231
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.38 E-value=3.6e+02 Score=27.20 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=50.9
Q ss_pred hhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 005569 498 FELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573 (690)
Q Consensus 498 ~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~sL~keNkiLv~K~k~ 573 (690)
-.|.+++.=++.++..|+..|..+...+-.| .-|++++. -.-+|-.+.++|+.++..+..-+.-.++++++
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~----~eR~~~l~-~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIEEAKKGREES----EEREELLE-ELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3567777777888888888887775555554 66777544 45678888888888888777777777776665
No 232
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.25 E-value=9.7e+02 Score=26.62 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=36.0
Q ss_pred ecccchhhhhhhhhhhhHHHHHHHhHhHHhHhhhhhhhhhh---hhHHHHHHHHHHHHHHHHHHHH
Q 005569 493 LSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVN---HRTKLMMEMVMQLATQRELIQK 555 (690)
Q Consensus 493 LSetN~ELneELsFLR~R~e~LE~sL~~An~~K~stAKDIg---~rtK~i~dlV~qLA~ERERL~~ 555 (690)
+.|-=-||.-|-++.|.++..|=.-|..+=.-.-...=||. .-+|....=+.|+=-|++-++.
T Consensus 152 ~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~ 217 (319)
T PF09789_consen 152 LLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQ 217 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678888999999999997777665444333333443 3333444444444444443333
No 233
>PF15168 TRIQK: Triple QxxK/R motif-containing protein family
Probab=24.08 E-value=79 Score=28.68 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=18.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHh
Q 005569 660 GLRNRKHVFVAVFVALLSVAAIYLF 684 (690)
Q Consensus 660 g~Ln~KhifmAvlvlL~s~~avyl~ 684 (690)
|.-.-.++++|+|++|++..+.||+
T Consensus 47 gikev~l~l~ail~lL~a~Ya~fyl 71 (79)
T PF15168_consen 47 GIKEVALVLAAILVLLLAFYAFFYL 71 (79)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344568899999999877766555
No 234
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=23.95 E-value=1.3e+03 Score=27.57 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=78.8
Q ss_pred hhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhhhhhcccCCCccchhhcccCCcccccccccccchHHHhHHHHHHHHHhh
Q 005569 146 MEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLA 225 (690)
Q Consensus 146 ~~~KL~d~~~sLkQ~qe~i~eIk~Qsa~Fqr~~~~~~~~~~~~~~~~~e~g~~~n~~~~~~mqt~eqqRniLrMLEkSlA 225 (690)
+.++|.+|=+..+++..|=..+..+.--|+.++.. +. ++++..-.+. -+...+.|+..-+
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~------~t----------s~ik~~ye~E----l~~ar~~l~e~~~ 106 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGR------ET----------SGIKAKYEAE----LATARKLLDETAR 106 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CC----------cchhHHhhhh----HHHHHHHHHHHHH
Confidence 46777778788888888877777777777766521 11 1122222221 1333445555555
Q ss_pred hhhhhhhhhhHhhhhHHHhhhhhcchhhhHHHHHhhHHHHHHhhhhccchhHHHhhhcHHh
Q 005569 226 RELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEM 286 (690)
Q Consensus 226 ~ElDLEKkL~esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL 286 (690)
.=-.+|.++.-++.-.++|+.|+...+++.---+|.+-+...|.=..+..-..++.-=|-|
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~l 167 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKAL 167 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 5556888888888888999999999988888888887777777666665555555544443
No 235
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=23.81 E-value=1.3e+02 Score=33.41 Aligned_cols=106 Identities=20% Similarity=0.200 Sum_probs=69.7
Q ss_pred HhhhhHHHhhhhhcchhhhHHHHHhhHHHHHHhhhhccchhHHHhhhcHHhhcccceEEEeecccccchhHHhhhHHHHH
Q 005569 236 ELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFI 315 (690)
Q Consensus 236 esr~~eEeLklKlh~~Eqe~~~mEE~ae~v~~R~~eAeNAsEvL~GiSKeL~grlqi~QF~Lngs~~RE~eLkSKLe~~~ 315 (690)
.+....-+|..|-. -...-|-|++.-..=+|.=+|-|.---+ |...--|.+-....----|=|+|++.+
T Consensus 164 qse~lIN~Ls~rAr--~dt~r~Ae~eV~~~eerv~kAs~~L~~y---------r~kngvfdp~~qaevq~~Lvs~Le~eL 232 (372)
T COG3524 164 QSEKLINQLSERAR--RDTVRFAEEEVQKAEERVKKASNDLTDY---------RIKNGVFDPKAQAEVQMSLVSKLEDEL 232 (372)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HhhcCccChhhhhHHHHHHHHHHHHHH
Confidence 34444445544431 1235567777777777877776642111 222233455444444456778999999
Q ss_pred HHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHH
Q 005569 316 EQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKE 352 (690)
Q Consensus 316 ~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrE 352 (690)
-++.++=..++-.-...+|++..|.-...+|+|||--
T Consensus 233 ~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~q 269 (372)
T COG3524 233 IVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQ 269 (372)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHH
Confidence 9988877777776666789999999999999999864
No 236
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=23.57 E-value=4.1e+02 Score=24.02 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhh
Q 005569 374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 415 (690)
Q Consensus 374 MEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~f 415 (690)
.+.=|..|...-++=.-+.+.++++|..|..+|-|++.-|..
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555556677777888888888888887763
No 237
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=23.22 E-value=8.6e+02 Score=29.79 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHH-------hhhHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhH
Q 005569 338 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQL-------NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 410 (690)
Q Consensus 338 tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqi-------sdMEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELn 410 (690)
.+..++..||..||.+...+.++.+..+-..... .++|--...||+.+..+-.|-..-=.=|.-|.+-|+-|.
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4566777888888888888888777776654432 234444444555555555554444445677888888888
Q ss_pred HHhhhhccCCC---CCcchhhhHHH-------HHh-------hHHHHHHHhHhhhhhhHHhhhhHHHHHH
Q 005569 411 EEINFLKGNND---SNTKKVGILEN-------QLR-------DLEIQLQQAKVSSEASQEQQSMLYSAIW 463 (690)
Q Consensus 411 eEL~fLk~~~~---~~s~kv~~LEk-------qLr-------Esd~QLqhAkAS~eAs~EqQ~MLysti~ 463 (690)
+-++.||+.-- ..-.=...|+. ||- =++-||+-|--+...=-||=+-|+.=..
T Consensus 111 Kqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~ 180 (717)
T PF09730_consen 111 KQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELD 180 (717)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887420 00001112222 221 1455666666666666666666665443
No 238
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=23.08 E-value=3.8e+02 Score=23.38 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=14.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhh
Q 005569 334 SEVLTMKEKVKSLEEQLKESE 354 (690)
Q Consensus 334 sE~~tL~eKV~sLEkqLrESe 354 (690)
.++.+|+++..++..++.-.+
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~ 25 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHE 25 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467788888887777765444
No 239
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.05 E-value=1.1e+03 Score=28.07 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=9.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhh
Q 005569 334 SEVLTMKEKVKSLEEQLKESEI 355 (690)
Q Consensus 334 sE~~tL~eKV~sLEkqLrESe~ 355 (690)
.++..++.++...|++|.+...
T Consensus 274 ~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 274 RQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 240
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.75 E-value=1.7e+03 Score=28.71 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=18.1
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhcccc
Q 005569 102 FGILDSELREVERLLDTIHVEIVNVHH 128 (690)
Q Consensus 102 ~gILDSEVrELe~~~~tlq~~I~~~~~ 128 (690)
|+|.|-|+.|.-+-++-|..+-..+.+
T Consensus 225 YtiYdrEl~E~~~~l~~le~~r~~~~e 251 (1200)
T KOG0964|consen 225 YTIYDRELNEINGELERLEEDRSSAPE 251 (1200)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccch
Confidence 466777777777777777766665554
No 241
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=22.60 E-value=1.5e+03 Score=27.86 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=63.0
Q ss_pred hhhHHHHHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhH----HHHHHHHhhhhhhhcccccccccceeeecccchhhhh
Q 005569 427 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM----ETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKN 502 (690)
Q Consensus 427 v~~LEkqLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DM----E~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELne 502 (690)
.+.||.+++..-.++.+.++...+...+.++++....|= +.-+.+|+.|+...+....-.
T Consensus 354 ~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~---------------- 417 (717)
T PF09730_consen 354 LEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSRED---------------- 417 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------------
Confidence 566788888888888888888777777777777666553 333566666666554322211
Q ss_pred hhhhhhhHHHHHHHhHhHHhHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 005569 503 KQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS 559 (690)
Q Consensus 503 ELsFLR~R~e~LE~sL~~An~~K~stAKDIg~rtK~i~dlV~qLA~ERERL~~Qi~s 559 (690)
+.|+..||..|+.+.. .|.|=+..-..-.|...-++-|=-.|..+|-+
T Consensus 418 -----qeri~~LE~ELr~l~~----~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~ 465 (717)
T PF09730_consen 418 -----QERISELEKELRALSK----LAGESQGSLNSAQDELVTFSEELAQLYHHVCM 465 (717)
T ss_pred -----HHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2255666666655532 23333333333445555556555566666544
No 242
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.36 E-value=40 Score=35.15 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=25.7
Q ss_pred ccceeccccccchhHHHHHHHHHHHHHHHHHHh
Q 005569 652 ETLRVQDAGLRNRKHVFVAVFVALLSVAAIYLF 684 (690)
Q Consensus 652 eTVRrIDag~Ln~KhifmAvlvlL~s~~avyl~ 684 (690)
-|.|-||-.++.=|+|||+-+|+++ ++.|+|
T Consensus 178 ~ti~lIeRR~~~Dk~iF~~G~i~~~--v~~yl~ 208 (213)
T KOG3251|consen 178 QTIRLIERRVREDKIIFYGGVILTL--VIMYLF 208 (213)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHH
Confidence 4889999999999999999888885 445555
No 243
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=22.24 E-value=1.8e+02 Score=32.25 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=47.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhh
Q 005569 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393 (690)
Q Consensus 334 sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe 393 (690)
..|.-|+.|+..||++|.+.+.+|+.++....-.|++..=++.++.|-+-.=.=-.||.+
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddaniD~~y~ksRR~ 234 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANIDSEYVKSRRD 234 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHhhhh
Confidence 567889999999999999999999999988887888877777777766544433344443
No 244
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=22.22 E-value=1.5e+02 Score=33.30 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=16.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhc
Q 005569 660 GLRNRKHVFVAVFVALLSVAAIYLFN 685 (690)
Q Consensus 660 g~Ln~KhifmAvlvlL~s~~avyl~~ 685 (690)
+--.++..++|++|+|+....+|||+
T Consensus 33 ~~~g~~l~~~aili~la~g~g~y~~~ 58 (390)
T PRK10920 33 NRTGLVLSAVAIAIALAAGAGLYYHG 58 (390)
T ss_pred CCccHHHHHHHHHHHHHHhhHHHHHH
Confidence 43455566666676666666678874
No 245
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=22.20 E-value=5.3e+02 Score=25.67 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhhhhhhHHHh
Q 005569 341 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEK 398 (690)
Q Consensus 341 eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv~kAESRAe~AE~k 398 (690)
.||.++++-..+.+-+|--|..+.-+..+.|+-..-.|..--++...+|++.-.||.|
T Consensus 77 lkvr~a~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenk 134 (136)
T PF11570_consen 77 LKVRRAQKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENK 134 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 7999999988888888877777755555555555555655566666667776666665
No 246
>PF13029 DUF3890: Domain of unknown function (DUF3890)
Probab=22.12 E-value=50 Score=29.60 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=15.0
Q ss_pred ceeccccccchhHHHHH
Q 005569 654 LRVQDAGLRNRKHVFVA 670 (690)
Q Consensus 654 VRrIDag~Ln~KhifmA 670 (690)
+|+||++.||.-+||+.
T Consensus 53 ~rgI~~~~Ln~s~iflL 69 (74)
T PF13029_consen 53 TRGIDISSLNYSQIFLL 69 (74)
T ss_pred HcCCChhhccHHHHHHH
Confidence 69999999999999853
No 247
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.07 E-value=1.7e+02 Score=33.92 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhchhhhHHHHhhhHHHHHHHHHhh
Q 005569 340 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 385 (690)
Q Consensus 340 ~eKV~sLEkqLrESe~QL~~a~AS~ea~~eqisdMEnvIedLKekv 385 (690)
+.|+..||+||.....+++...+-.+..+++|.+++.-|..|+..+
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888766665444444456777778888888887777
No 248
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.99 E-value=1e+02 Score=26.38 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=16.4
Q ss_pred ccccchhHHHHHHHHHHHHHHH
Q 005569 659 AGLRNRKHVFVAVFVALLSVAA 680 (690)
Q Consensus 659 ag~Ln~KhifmAvlvlL~s~~a 680 (690)
..+.++.+||.++|++++++.+
T Consensus 33 k~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 33 KRMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999865543
No 249
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.81 E-value=6e+02 Score=22.99 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=35.2
Q ss_pred HHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhh---hhhhhchhhhHHHHhhhHHHHHHHHHhhhhhhh
Q 005569 324 VLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL---QNANACFQTSQEQLNEMDNFIESLKESLYGAES 390 (690)
Q Consensus 324 ~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL---~~a~AS~ea~~eqisdMEnvIedLKekv~kAES 390 (690)
.|+++..........+.+.+..|++.+.+.+.+- +--....+.+..+++.||.++..|=+=..+=|+
T Consensus 25 LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~ 94 (99)
T PF10046_consen 25 LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELES 94 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554444566666677777776666655532 222222333455666666666655444444333
No 250
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=21.54 E-value=94 Score=30.68 Aligned_cols=52 Identities=15% Similarity=0.362 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhhcccceeccccchhhHHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHhhHhhhhh
Q 005569 112 VERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRV 177 (690)
Q Consensus 112 Le~~~~tlq~~I~~~~~ki~s~~hl~e~f~~m~~~~~KL~d~~~sLkQ~qe~i~eIk~Qsa~Fqr~ 177 (690)
++++-+++-.-|......|..|+- |+..+..+..+-.||.+||+..-.|+-+
T Consensus 97 v~~~cdsvD~sik~~y~liakceE--------------Ln~~M~~v~~La~qIK~Ik~~lD~lE~~ 148 (149)
T PF10157_consen 97 VDKLCDSVDASIKSMYTLIAKCEE--------------LNESMKPVYKLAQQIKDIKKLLDLLESL 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555666666655555555544 8889999999999999999999988754
No 251
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=21.01 E-value=1.1e+02 Score=29.61 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=25.8
Q ss_pred CCCcccee--ccccccchhHHHHHHHHHHHHHHHHHHhc
Q 005569 649 PNSETLRV--QDAGLRNRKHVFVAVFVALLSVAAIYLFN 685 (690)
Q Consensus 649 ~~~eTVRr--IDag~Ln~KhifmAvlvlL~s~~avyl~~ 685 (690)
+-..|+|+ --..+||--|+++++.+++++++.+|+|.
T Consensus 32 ~ve~t~~~~~~~~sv~~~~y~l~~~~v~~L~~~~~y~~~ 70 (122)
T PF04530_consen 32 PVEMTARRETTFLSVLNDNYVLFVCAVCMLFSILVYLYS 70 (122)
T ss_pred cHhHhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhee
Confidence 44456665 12446888888888888887888888874
No 252
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=20.63 E-value=2.2e+02 Score=29.01 Aligned_cols=47 Identities=28% Similarity=0.363 Sum_probs=31.4
Q ss_pred HHhhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhh
Q 005569 306 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 356 (690)
Q Consensus 306 eLkSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~Q 356 (690)
.-++.|++.|.+|...-..++++.. ...+|++|+..|+.+|....-+
T Consensus 120 ~~~~eL~~eI~~L~~~i~~le~~~~----~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 120 QTKNELEDEIKQLEKEIQRLEEIQS----KSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666655555555443 4568999999999999876654
No 253
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=20.55 E-value=8.4e+02 Score=24.18 Aligned_cols=91 Identities=25% Similarity=0.334 Sum_probs=61.1
Q ss_pred HHhhHHHHHHHhHhhhhhhHHhhhhHHHHHHhHHHHHHHHhhhhhhhc-------------ccccccc-cceeeecccc-
Q 005569 433 QLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE-------------SKTESVE-EQCIVLSEDN- 497 (690)
Q Consensus 433 qLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKAE-------------sraesaE-~kCilLSetN- 497 (690)
.|.++.-|+|.-.+-+++.+-+..+|-.+|+...+.|+.|+.=....+ .++.-.- ++-|+=--++
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~ 86 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGY 86 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCce
Confidence 455666666666777777777888889999999999988876443332 0111111 4444433333
Q ss_pred ---hhhhhhhhhhhhHHHHHHHhHhHHhH
Q 005569 498 ---FELKNKQSFMRDKIKILESSLNRANI 523 (690)
Q Consensus 498 ---~ELneELsFLR~R~e~LE~sL~~An~ 523 (690)
...++=+.||+.|++.|+.++...++
T Consensus 87 ~ae~~~~eAie~l~k~~~~l~~~~~~l~~ 115 (145)
T COG1730 87 YAEKSADEAIEFLKKRIEELEKAIEKLQQ 115 (145)
T ss_pred eeeecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999998877554
No 254
>PHA02650 hypothetical protein; Provisional
Probab=20.49 E-value=99 Score=28.20 Aligned_cols=24 Identities=8% Similarity=0.192 Sum_probs=18.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhc
Q 005569 662 RNRKHVFVAVFVALLSVAAIYLFN 685 (690)
Q Consensus 662 Ln~KhifmAvlvlL~s~~avyl~~ 685 (690)
.+|++++.+++++++.++..|+|-
T Consensus 47 ~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 47 FNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888887777677763
No 255
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=20.38 E-value=1.5e+02 Score=28.71 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred hHhhhhhhhhcccCCCccc
Q 005569 171 SAKFQRVLSYFIHGNNDEA 189 (690)
Q Consensus 171 sa~Fqr~~~~~~~~~~~~~ 189 (690)
..+||+- +|.+|+.||.
T Consensus 85 ~~~~~kY--SyPN~~VGne 101 (121)
T PF03310_consen 85 GSSLQKY--SYPNWNVGNE 101 (121)
T ss_dssp -------------------
T ss_pred CCCCccc--CCCCCCCCch
Confidence 4788882 4678999985
No 256
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.16 E-value=8.4e+02 Score=24.00 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=22.0
Q ss_pred hhhhhhhhHHHhhhhhccchhhhHHHhhhhccC
Q 005569 387 GAESRAESAEEKVTQLTDTNLELSEEINFLKGN 419 (690)
Q Consensus 387 kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~ 419 (690)
|++.|.+.+.-..+ +.++|-++..|++-||..
T Consensus 115 K~~~r~e~~~~~~k-i~e~~~ki~~ei~~lr~~ 146 (177)
T PF07798_consen 115 KGRIREEQAKQELK-IQELNNKIDTEIANLRTE 146 (177)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 55666666655554 578888888888887773
No 257
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.12 E-value=1e+03 Score=25.07 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=33.0
Q ss_pred HHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhh
Q 005569 324 VLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 366 (690)
Q Consensus 324 ~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea 366 (690)
.+.++.+- +++-.|+..|..+|.+|++....+..|++.-..
T Consensus 24 ~lNd~TGY--s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ 64 (207)
T PF05546_consen 24 ALNDVTGY--SEIEKLKKSIEELEDELEAARQEVREAKAAYDD 64 (207)
T ss_pred HHHhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455553 889999999999999999999999999876433
Done!