Query 005569
Match_columns 690
No_of_seqs 47 out of 49
Neff 2.9
Searched_HMMs 13730
Date Tue Mar 26 19:14:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005569.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2074-2078//hhsearch_scop/005569hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54d_ f.23.1.1 (D:) Mitochon 5.4 64 0.0047 9.1 2.9 30 658-687 69-98 (144)
2 d2dlba1 b.174.1.1 (A:2002-2071 5.2 42 0.0031 10.2 -1.0 31 390-420 17-49 (70)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 4.4 82 0.0059 8.5 2.1 17 665-686 7-23 (26)
4 d1wj9a2 d.58.53.1 (A:88-211) H 4.4 79 0.0057 8.6 -0.1 32 101-136 89-120 (124)
5 d1hlva1 a.4.1.7 (A:1-66) DNA-b 4.2 88 0.0064 8.3 3.0 31 203-233 3-40 (66)
6 d1ux5a_ a.207.1.1 (A:) Bni1 {B 3.8 99 0.0072 7.9 7.9 10 343-352 300-309 (411)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 3.6 1.1E+02 0.0078 7.7 11.7 89 433-521 2-107 (133)
8 d1ud0a_ a.8.4.1 (A:) DnaK {Rat 3.4 1.1E+02 0.0082 7.6 6.6 50 332-387 27-76 (84)
9 d1d2da_ a.16.1.3 (A:) Multifun 3.3 1.2E+02 0.0085 7.5 0.5 14 370-383 5-18 (56)
10 d2bbha1 d.328.1.1 (A:13-244) M 2.4 1.8E+02 0.013 6.4 6.7 75 99-181 156-230 (232)
No 1
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.37 E-value=64 Score=9.12 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 466530368999999999999999873156
Q 005569 658 DAGLRNRKHVFVAVFVALLSVAAIYLFNKK 687 (690)
Q Consensus 658 Dag~Ln~KhifmAvlvlL~s~~avyl~~~~ 687 (690)
.++-=-||.||..+|+.+..++.+|++++.
T Consensus 69 ~~p~gewK~v~g~~~~~i~~s~~i~~~~r~ 98 (144)
T d1v54d_ 69 NRSTNEWKTVVGAAMFFIGFTALLLIWEKH 98 (144)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 389996367899999999999999999999
No 2
>d2dlba1 b.174.1.1 (A:2002-2071) Uncharacterized protein YopT {Bacillus subtilis [TaxId: 1423]}
Probab=5.22 E-value=42 Score=10.25 Aligned_cols=31 Identities=42% Similarity=0.573 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHCCCC
Q ss_conf 234458876665100--0044578852102699
Q 005569 390 SRAESAEEKVTQLTD--TNLELSEEINFLKGNN 420 (690)
Q Consensus 390 SRAe~AE~kc~~Lte--TN~ELneEL~fLk~~~ 420 (690)
++|++.|.--++.|. .|+-|++|.+|||..|
T Consensus 17 nkadspevsetlvtricenlllskevsflkadg 49 (70)
T d2dlba1 17 NKADSPEVSETLVTRICENLLLSKEVSFLKADG 49 (70)
T ss_dssp EECSSHHHHHHHHHHHHHTTTTCSEEEEECTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHEEECCC
T ss_conf 478980377999999999887663432013378
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.44 E-value=82 Score=8.48 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6899999999999999987315
Q 005569 665 KHVFVAVFVALLSVAAIYLFNK 686 (690)
Q Consensus 665 KhifmAvlvlL~s~~avyl~~~ 686 (690)
-|.|-.+|.+| +||.|.
T Consensus 7 iw~fw~ffall-----i~ylqt 23 (26)
T d1rzhh2 7 IYSFWIFLAGL-----IYYLQT 23 (26)
T ss_dssp HHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHC
T ss_conf 99999999999-----999850
No 4
>d1wj9a2 d.58.53.1 (A:88-211) Hypothetical protein TTHB192 {Thermus thermophilus [TaxId: 274]}
Probab=4.41 E-value=79 Score=8.57 Aligned_cols=32 Identities=28% Similarity=0.231 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCH
Q ss_conf 642213568979999988875340122011256641
Q 005569 101 LFGILDSELREVERLLDTIHVEIVNVHHKISSCKHL 136 (690)
Q Consensus 101 L~gILDSEVrELe~~~~tlq~~I~~~~~ki~s~~hl 136 (690)
..|+| +|..-|.|...|..+|+ +.|.|+|.-+
T Consensus 89 f~G~L--~VtDp~~f~~aL~~GIG--raKAyGcGLL 120 (124)
T d1wj9a2 89 FEGRL--EVVDPERALATLRRGVG--PGKALGLGLL 120 (124)
T ss_dssp EEEEE--EESCHHHHHHHHHHCSS--SCTTTTCCCC
T ss_pred EEEEE--EECCHHHHHHHHHHCCC--CCCCCCCCEE
T ss_conf 99999--98499999999984788--6445474105
No 5
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.19 E-value=88 Score=8.29 Aligned_cols=31 Identities=16% Similarity=0.352 Sum_probs=21.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHH-------HHHHHHHHHH
Q ss_conf 434554258776899998997-------6666514454
Q 005569 203 GKSKMKNADQQRHILRMLEKS-------LARELDLEKK 233 (690)
Q Consensus 203 ~~~~mqt~eqqRniLrMLEkS-------lA~ElDLEKk 233 (690)
.+-+.-|.++++.|++++|.. ||+++.+++-
T Consensus 3 ~kRk~LT~~eK~~ii~~~e~g~k~sq~eIA~~fGv~~S 40 (66)
T d1hlva1 3 PKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPS 40 (66)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHH
T ss_conf 63233779999999999980872109999999599764
No 6
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.78 E-value=99 Score=7.94 Aligned_cols=10 Identities=10% Similarity=0.328 Sum_probs=3.1
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999988
Q 005569 343 VKSLEEQLKE 352 (690)
Q Consensus 343 V~sLEkqLkE 352 (690)
++.|.+.++.
T Consensus 300 ~~~L~~~l~~ 309 (411)
T d1ux5a_ 300 CKDFSQSIVN 309 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=3.57 E-value=1.1e+02 Score=7.75 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CC----------CCCCCC-CCEEEECCCC--
Q ss_conf 87468888888674101218766669988975899999985444321--01----------110111-1414620451--
Q 005569 433 QLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKA--ES----------KTESVE-EQCIVLSEDN-- 497 (690)
Q Consensus 433 qLrEsd~QLqhAkAS~eAs~EqQ~MLysti~DME~lIeDLKsKvsKA--Es----------raesaE-~kCiiLSetN-- 497 (690)
+|.+..-|++.-+.-.+..+.+-..|...+.+.+..++-|++=-.+. +. ++.-.. ++-++.=-+|
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~ 81 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA 81 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCCEEEEECCCEE
T ss_conf 48999999999999999999999999999999999999999762278970799747853888786389864888359823
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --213444455666899889867687
Q 005569 498 --FELKNKQSFMRDKIKILESSLNRA 521 (690)
Q Consensus 498 --~ELneELsFLR~R~e~LE~sL~~A 521 (690)
..+.+-+.|+..|.+-|+..+..-
T Consensus 82 vE~~~~eA~~~l~~ri~~l~~~~~~l 107 (133)
T d1fxkc_ 82 IKKNFEDAMESIKSQKNELESTLQKM 107 (133)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55059999999999999999999999
No 8
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.41 E-value=1.1e+02 Score=7.60 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74145349999999999998856564321120353388986469999999876663
Q 005569 332 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 387 (690)
Q Consensus 332 ~~sE~~tL~eKV~sLEkqLkESe~QL~~a~AS~ea~~eqisdMEniIedLKekv~k 387 (690)
+..+.-++.+++...+.||-+ +..|+.+.+..++.+++.++..+=.+++.
T Consensus 27 ~~~dk~~i~~~l~e~~~WL~~------n~~a~~ee~~~k~~eLe~~~~PI~~k~y~ 76 (84)
T d1ud0a_ 27 NDEDKQKILDKCNEIISWLDK------NQTAEKEEFEHQQKELEKVCNPIITKLYQ 76 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 899999999999999999863------78888999999999999998799999874
No 9
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=3.33 E-value=1.2e+02 Score=7.52 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 98646999999987
Q 005569 370 QLNEMDNFIESLKE 383 (690)
Q Consensus 370 qisdMEniIedLKe 383 (690)
+|....+.|-+||.
T Consensus 5 ~I~~QGd~VR~LKa 18 (56)
T d1d2da_ 5 KIAAQGEVVRKLKA 18 (56)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999871
No 10
>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}
Probab=2.35 E-value=1.8e+02 Score=6.39 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87642213568979999988875340122011256641369999998664454258638999999999987567656554
Q 005569 99 DLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVL 178 (690)
Q Consensus 99 DlL~gILDSEVrELe~~~~tlq~~I~~~~~ki~s~~hl~e~f~~m~~~~~KL~d~~~sLkQ~qe~i~eIk~Qsa~Fqr~~ 178 (690)
.|+|.|+|.-|.....+++.+..+|-..+..+..... ...-..+.....+|..++-.+.-.|--..++.|--
T Consensus 156 ~ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~--------~~~l~~i~~lrr~l~~lrr~l~p~revl~~L~r~~ 227 (232)
T d2bbha1 156 YLLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPE--------KETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 227 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999998999999999999999978750776--------78999999999999999998888999999984479
Q ss_pred HHC
Q ss_conf 200
Q 005569 179 SYF 181 (690)
Q Consensus 179 ~~~ 181 (690)
+.+
T Consensus 228 ~~l 230 (232)
T d2bbha1 228 PPL 230 (232)
T ss_dssp HHH
T ss_pred CCC
T ss_conf 866
Done!