Query 005571
Match_columns 690
No_of_seqs 173 out of 228
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 01:34:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2370 Cactin [Signal transdu 100.0 4E-183 1E-187 1446.6 41.9 563 104-690 41-623 (623)
2 PF09732 CactinC_cactus: Cactu 100.0 4.4E-84 9.6E-89 592.8 12.0 125 566-690 1-125 (125)
3 PF10312 Cactin_mid: Conserved 100.0 1.3E-59 2.7E-64 466.4 16.5 186 220-419 1-191 (191)
4 KOG2370 Cactin [Signal transdu 97.7 0.00093 2E-08 74.4 14.9 245 99-429 32-287 (623)
5 KOG0227 Splicing factor 3a, su 96.2 0.0061 1.3E-07 61.2 4.7 77 605-685 129-214 (222)
6 COG5246 PRP11 Splicing factor 95.8 0.013 2.8E-07 58.5 5.3 73 606-684 136-217 (222)
7 TIGR01642 U2AF_lg U2 snRNP aux 95.8 0.0067 1.4E-07 68.4 3.5 21 597-619 404-425 (509)
8 KOG4676 Splicing factor, argin 94.6 0.019 4.1E-07 63.1 2.3 20 69-88 346-365 (479)
9 KOG4676 Splicing factor, argin 94.5 0.029 6.3E-07 61.7 3.3 22 70-91 353-374 (479)
10 KOG0835 Cyclin L [General func 93.8 0.067 1.5E-06 58.0 4.4 17 12-28 278-294 (367)
11 KOG4368 Predicted RNA binding 93.2 0.064 1.4E-06 61.6 3.1 9 75-83 645-653 (757)
12 TIGR01642 U2AF_lg U2 snRNP aux 93.0 0.099 2.2E-06 59.1 4.5 11 287-297 188-198 (509)
13 TIGR01622 SF-CC1 splicing fact 92.1 0.097 2.1E-06 58.4 2.8 11 286-296 198-208 (457)
14 KOG1847 mRNA splicing factor [ 91.5 0.099 2.1E-06 60.6 2.0 21 66-86 769-789 (878)
15 KOG2888 Putative RNA binding p 90.6 0.2 4.3E-06 54.4 3.1 6 23-28 313-318 (453)
16 KOG1029 Endocytic adaptor prot 89.8 56 0.0012 39.9 23.6 39 373-411 548-593 (1118)
17 PF10312 Cactin_mid: Conserved 86.7 1.4 3E-05 44.8 6.0 46 366-411 67-113 (191)
18 KOG0147 Transcriptional coacti 85.0 1.2 2.6E-05 51.3 5.0 25 5-29 58-82 (549)
19 KOG2548 SWAP mRNA splicing reg 83.8 0.7 1.5E-05 52.9 2.5 8 150-157 497-504 (653)
20 KOG3263 Nucleic acid binding p 71.0 1.5 3.2E-05 43.9 0.3 13 150-162 162-174 (196)
21 PF08648 DUF1777: Protein of u 69.5 4.7 0.0001 40.0 3.5 10 140-149 134-143 (180)
22 KOG0670 U4/U6-associated splic 69.2 9.7 0.00021 44.5 6.2 52 592-657 666-720 (752)
23 KOG2548 SWAP mRNA splicing reg 59.5 6.3 0.00014 45.5 2.5 10 191-200 583-592 (653)
24 KOG0670 U4/U6-associated splic 55.4 11 0.00024 44.1 3.5 15 380-394 478-492 (752)
25 KOG4661 Hsp27-ERE-TATA-binding 49.8 3.1E+02 0.0067 32.8 13.6 8 311-318 727-734 (940)
26 PF06465 DUF1087: Domain of Un 47.4 25 0.00055 30.2 3.6 12 391-402 20-31 (66)
27 KOG3794 CBF1-interacting corep 46.8 22 0.00047 40.0 4.0 18 12-29 299-316 (453)
28 PTZ00266 NIMA-related protein 45.4 1E+02 0.0022 39.1 9.9 24 147-170 401-434 (1021)
29 PF14775 NYD-SP28_assoc: Sperm 37.3 62 0.0013 27.2 4.4 35 396-430 1-40 (60)
30 smart00774 WRKY DNA binding do 35.7 50 0.0011 27.8 3.6 50 583-641 3-52 (59)
31 PF01701 PSI_PsaJ: Photosystem 35.0 8.8 0.00019 29.4 -0.8 10 609-618 28-37 (37)
32 PF13983 YsaB: YsaB-like lipop 33.5 24 0.00051 30.7 1.3 18 663-680 56-75 (77)
33 PF00659 POLO_box: POLO box du 32.7 22 0.00048 29.7 1.1 21 662-682 1-21 (68)
34 KOG0132 RNA polymerase II C-te 32.3 35 0.00075 41.5 2.9 32 159-200 422-453 (894)
35 KOG4661 Hsp27-ERE-TATA-binding 31.8 5.2E+02 0.011 31.1 11.8 11 11-21 500-510 (940)
36 KOG1150 Predicted molecular ch 30.0 2.8E+02 0.006 29.2 8.4 30 190-219 165-196 (250)
37 KOG4246 Predicted DNA-binding 30.0 26 0.00057 42.7 1.5 30 566-598 1008-1037(1194)
38 KOG1029 Endocytic adaptor prot 30.0 4.6E+02 0.0099 32.6 11.3 19 285-303 482-500 (1118)
39 KOG1882 Transcriptional regula 28.1 41 0.00089 35.8 2.3 12 41-52 33-44 (293)
40 TIGR01994 SUF_scaf_2 SUF syste 27.1 1.1E+02 0.0023 29.4 4.9 48 364-411 71-121 (137)
41 PRK02733 photosystem I reactio 26.9 11 0.00025 29.6 -1.4 9 610-618 29-37 (42)
42 CHL00105 psaJ photosystem I su 26.0 13 0.00028 29.3 -1.3 9 610-618 29-37 (42)
43 smart00061 MATH meprin and TRA 25.9 69 0.0015 26.9 3.0 70 596-675 16-86 (95)
44 KOG0120 Splicing factor U2AF, 24.6 53 0.0012 38.3 2.6 10 563-572 487-496 (500)
45 KOG3088 Secretory carrier memb 23.2 80 0.0017 34.5 3.4 16 368-383 220-235 (313)
46 KOG4364 Chromatin assembly fac 23.0 3.9E+02 0.0084 32.6 9.0 17 395-411 492-508 (811)
47 PF04889 Cwf_Cwc_15: Cwf15/Cwc 22.4 1.6E+02 0.0035 31.3 5.5 20 189-208 149-168 (244)
48 PF13904 DUF4207: Domain of un 22.1 3.1E+02 0.0067 29.3 7.6 30 215-261 213-242 (264)
49 KOG0415 Predicted peptidyl pro 21.9 24 0.00052 39.3 -0.7 24 15-38 376-399 (479)
50 KOG4246 Predicted DNA-binding 21.7 67 0.0015 39.5 2.7 12 314-325 581-592 (1194)
No 1
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-183 Score=1446.57 Aligned_cols=563 Identities=50% Similarity=0.880 Sum_probs=491.3
Q ss_pred hhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccccchhhhhhhcCCChhhhhHHH
Q 005571 104 RKRKSSRNITEEEIAEYLAKKAQRKAAKVAKKLRAQKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEEFSVKA 183 (690)
Q Consensus 104 ~~~~~~~~~~eek~~~~~~kk~~k~a~~~~~kl~~~~~~gYTne~NPFGD~nLt~~FVW~KK~Eke~~~gls~~e~~~k~ 183 (690)
++.+++...+|||++++|++|++|+|.+.+++++++.+.||||++|||||+|||.||||+||+|++|..|+|+.++++..
T Consensus 41 Kee~k~~e~~EEKrarrm~kK~~K~a~R~~~~~~d~~~~~YsN~~npF~DSnLT~tFvw~kklere~~rgls~~ef~~~~ 120 (623)
T KOG2370|consen 41 KEESKSKEYSEEKRARRMSKKAQKKALRAAKKLKDQSVSGYSNDSNPFGDSNLTRTFVWGKKLEREGSRGLSPREFRVSN 120 (623)
T ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHHhhcccccccCccCCCCCcccccchhheeccchhhhhcccCCChhhccHhh
Confidence 45566667899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHhhhhhcccchhhhhhhhhhcCCCCcchhh
Q 005571 184 EKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARER-ARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVL 262 (690)
Q Consensus 184 ~~~r~~e~~~EiEkvKkRReeRE~Ek~~~Eee~~~l~R~r-e~~~~~eW~~kEd~FhL~Qak~RS~IRIregRaKPID~L 262 (690)
...|+.+|+.|+++|||+|++|+.|++++|+++.|+||.+ ++.+|.+|..+| |||+|+|+||.|||++|||||||+|
T Consensus 121 ~qrr~renl~evekvkk~reer~~eka~~Ede~mmlqrar~aa~qf~d~~~ke--Fh~dq~KlrseIrl~~Grak~idll 198 (623)
T KOG2370|consen 121 QQRRARENLPEVEKVKKRREERREEKAMQEDEFMMLQRARRAAIQFKDWRSKE--FHFDQDKLRSEIRLRPGRAKPIDLL 198 (623)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhccccccc--chhhhHhhhheeeecCCccchhhHH
Confidence 8788999999999999999999999999999999999999 999999999999 9999999999999999999999999
Q ss_pred hhhccCCCCCCccccCchhhhcCCChHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHhHHHHHHHHHHhHHHhhhhcC
Q 005571 263 CKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRG 342 (690)
Q Consensus 263 ak~l~~~~d~~~e~~eP~~i~~gLt~~dleeL~~DIk~yl~LE~~~~~n~~fW~~m~vicedeL~~~rk~e~~~~~~~~G 342 (690)
+++|.+.+.++++|++||.||+||+++|||+|..||++|++||+ ++++++||++|++||+|+|+..+ .+..
T Consensus 199 ~~~~dfgdeldmel~eP~~vlkg~~vedlEel~~dIk~y~ele~-~~kr~tyW~~v~~iv~delq~~~--~aqn------ 269 (623)
T KOG2370|consen 199 KNYIDFGDELDMELSEPYSVLKGLKVEDLEELSRDIKDYQELET-NQKRLTYWKDVIMIVNDELQHNK--VAQN------ 269 (623)
T ss_pred HhhhcccchhhhhccChHHHHccCCHhHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHH--hhhh------
Confidence 99999999999999999999999999999999999999999998 68999999999999999998762 2211
Q ss_pred CCCchhhhhhhccCchhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005571 343 EQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKML 422 (690)
Q Consensus 343 ~~~~~~~~~~~~gi~~sV~~DI~~il~gKs~~eL~~LE~qI~~KL~Sge~iDveYWE~lL~~L~v~kAka~L~~~h~~~l 422 (690)
.++.+||++|..||..||.|||++||++|+.||++||.||.++|++||+.||.+|++|||+|+|+++|+.+|
T Consensus 270 --------sRgd~~haave~dv~~il~~Ks~~qL~eLe~qieaklrsns~~d~~YWedll~qLk~ykAra~Lke~h~e~L 341 (623)
T KOG2370|consen 270 --------SRGDKLHAAVEVDVRKILAGKSFEQLEELEAQIEAKLRSNSPLDTDYWEDLLNQLKSYKARARLKETHNEEL 341 (623)
T ss_pred --------ccccceehhhhhhHHHHhCCcCHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhhhcc-ccCCCCch-hhhhcc---cCCCC------CCCCCCCccccc---hHHhhhcCCC--CCCCCC
Q 005571 423 RKHLQRLEQPSEVAKFE-TDLDSMPE-AEVIEH---DDNDA------GNFSPEPVLEDT---QEAEKEAGSF--SPELLH 486 (690)
Q Consensus 423 ~~~l~~l~~~~~~~~~~-~~~~~~~~-~~~~~~---~~~~~------~~~~~~~~~~~~---~~~~~~~~~~--sp~~~~ 486 (690)
+.+|..|++++..+..+ +++..... ++.+++ .+.++ ....+.|+.++. ..+.+.+|+| ||.+|+
T Consensus 342 r~~l~~Lk~e~~~e~~qevapqlkeemed~eee~~~~~~Dpel~e~e~a~~~r~l~~e~~d~~rel~~~gny~~S~~yi~ 421 (623)
T KOG2370|consen 342 RIRLNKLKNEEWDEAFQEVAPQLKEEMEDREEELYIVPIDPELIEREQAIPRRPLPEELADYERELYDAGNYVKSPTYIP 421 (623)
T ss_pred HHHHHHhhhhhhhhhhhhhChhhhhhhhcchhhcccCCCCCCccccccccCCCCCchHHHHHHHHHHHccccccCccccc
Confidence 99999999998777443 43332211 111111 11111 223333443211 2457889999 999999
Q ss_pred CCCCCcCCCh-hHHHH-HHHHHHHHHHHHHH-HHHHHhhhCCCCCCChHHHHHHHHHhcccccCcccccCCcccccCCcc
Q 005571 487 GDDDEEAIDP-DEDRA-LLERKRIAVLEDQQ-RRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQV 563 (690)
Q Consensus 487 ~~~~~~~i~~-~~d~~-~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~E~~F~~~~e~~l~~~~ 563 (690)
.++.+..++| +.+.. +|...+..+..++. .++-..+.+.++|. .++|.|+ +..||+.+|++|+ +|++|++++
T Consensus 422 ~~~ptqa~dp~~p~~e~Ll~e~e~~~~~tqr~~R~~~~~ds~~aPq--e~em~a~-a~eGMq~~eaifg--aE~~Lda~~ 496 (623)
T KOG2370|consen 422 ESDPTQAQDPTEPKNENLLNEDEDSIANTQRLERLYLQSDSAEAPQ--ELEMLAD-AVEGMQTDEAIFG--AEVNLDAEV 496 (623)
T ss_pred CCCcccccCCCCcchhhhhhhhHHHHHHHHHHHHHhhcCCCcCCcH--HHHHHHH-HHhcccccchhcc--chhcccchh
Confidence 8877666666 33333 44444555544333 24444444555565 4445553 4556999999998 499999999
Q ss_pred ccccccCCCCCCcccccccccccccccccccCCCCCCCCcccceeeEEeeccccCCCCCCCcEEEEeCCCCCCeEEEEEe
Q 005571 564 YWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFH 643 (690)
Q Consensus 564 y~W~dKYRPRKPrYFNRVhTGyEWNKYNQTHYD~DNPPPKiVQGYKFNIFYPDLIDKtkaPty~ie~~~~~~dtciIRF~ 643 (690)
|||+||||||||+||||||||||||||||||||+|||||||||||||||||||||||++||||+|++|.+++||||||||
T Consensus 497 ~lw~DkyrprKP~YfNRVhtGfeWNkYNQtHyd~dnPPPKiVQGYkFNIFYPDLidk~~aP~y~ie~~~d~~d~ciIRF~ 576 (623)
T KOG2370|consen 497 YLWHDKYRPRKPHYFNRVHTGFEWNKYNQTHYDEDNPPPKIVQGYKFNIFYPDLIDKGRAPTYRIERCRDKNDFCIIRFH 576 (623)
T ss_pred hhhccCcCcCCcchhhhhccccccccccccccccCCCCchhhcceeecccchhhhccccCCeeeeeecCCCCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeeeecccccccCCCccccccccceEEEEEeeccccccC
Q 005571 644 AGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 690 (690)
Q Consensus 644 AGPPYEDIAFrIVnrEWeyS~KrGFr~~FdrGILqL~FnFKr~rYRR 690 (690)
||||||||||+|||||||||||+||||+|+||||||||+||||||||
T Consensus 577 aGpPYeDIAFkIVnkeWeyshKrGfKcqF~ngvlqL~F~FKk~ryRR 623 (623)
T KOG2370|consen 577 AGPPYEDIAFKIVNKEWEYSHKRGFKCQFDNGVLQLWFRFKKYRYRR 623 (623)
T ss_pred cCCcchhhhhhhhcchhhhhhhcCccceeeCCeeeeeehhhhhhccC
Confidence 99999999999999999999999999999999999999999999998
No 2
>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.
Probab=100.00 E-value=4.4e-84 Score=592.83 Aligned_cols=125 Identities=82% Similarity=1.605 Sum_probs=124.1
Q ss_pred ccccCCCCCCcccccccccccccccccccCCCCCCCCcccceeeEEeeccccCCCCCCCcEEEEeCCCCCCeEEEEEecC
Q 005571 566 WHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAG 645 (690)
Q Consensus 566 W~dKYRPRKPrYFNRVhTGyEWNKYNQTHYD~DNPPPKiVQGYKFNIFYPDLIDKtkaPty~ie~~~~~~dtciIRF~AG 645 (690)
|+||||||||+||||||||||||||||||||+|||||||||||||||||||||||++||+|+|++++++++||||+||||
T Consensus 1 w~~~~~~~kP~~fnrv~tg~~WnkyN~thYd~dnpPPK~vqGYkFnIfYPdL~d~~~~P~y~i~~~~~~~~~~~L~F~Ag 80 (125)
T PF09732_consen 1 WSDKYRPRKPRYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLIDKSKTPRYRIEPDEDNPDFCILRFHAG 80 (125)
T ss_pred CCccCcccCCcEEEEEEecccccccchhccCCCCCCCceeeeeEEEEECCcccCCCCCCcEEEEECCCCCCEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred CCCcceeeeeecccccccCCCccccccccceEEEEEeeccccccC
Q 005571 646 PPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 690 (690)
Q Consensus 646 PPYEDIAFrIVnrEWeyS~KrGFr~~FdrGILqL~FnFKr~rYRR 690 (690)
||||||||||||||||||+++||+|+|++|||||||+|||++|||
T Consensus 81 pPYeDIAFkIvnrEWd~s~k~Gfr~~Fd~gilqL~F~FKr~~Yrr 125 (125)
T PF09732_consen 81 PPYEDIAFKIVNREWDYSHKRGFRCSFDRGILQLYFNFKRYRYRR 125 (125)
T ss_pred CCCcCEEEEEecCeeecCCCCCceEEeeCCEEEEEEEEEhhhccC
Confidence 999999999999999999999999999999999999999999998
No 3
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins. It contains two of three predicted coiled-coil motifs. Most proteins containing this domain also have IPR019134 from INTERPRO at the C-terminal end. Upstream of this domain in Drosophila proteins are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo [].
Probab=100.00 E-value=1.3e-59 Score=466.40 Aligned_cols=186 Identities=53% Similarity=0.951 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhhhhhhhhhcCCCCcchhhhhhccC-----CCCCCccccCchhhhcCCChHHHHHH
Q 005571 220 ARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSG-----SDDLDIEINEPYMVFKGLTVKEMEEL 294 (690)
Q Consensus 220 ~R~re~~~~~eW~~kEd~FhL~Qak~RS~IRIregRaKPID~Lak~l~~-----~~d~~~e~~eP~~i~~gLt~~dleeL 294 (690)
||++++++|++|++||++|||+||++||.|||++|||||||+||+||++ .++++++|++||+||+|||++||++|
T Consensus 1 qR~~e~~~~~ew~~kE~~F~L~Qak~rs~iRi~egRaKpID~La~~l~~~~~~~~~~~~~~~~eP~~i~~gL~~~dleeL 80 (191)
T PF10312_consen 1 QREREAEQFEEWEAKEEEFHLEQAKKRSEIRIREGRAKPIDLLAKNLRIIDGEREDDLEIELHEPYTIFEGLSLEDLEEL 80 (191)
T ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHhhccccccccccCcccCHHHHHhhCCHHHHHHH
Confidence 5889999999999999999999999999999999999999999999998 56788999999999999999999999
Q ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHhHHHHHHHHHHhHHHhhhhcCCCCchhhhhhhccCchhHHHHHHhhcCCCCHH
Q 005571 295 RDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHK 374 (690)
Q Consensus 295 ~~DIk~yl~LE~~~~~n~~fW~~m~vicedeL~~~rk~e~~~~~~~~G~~~~~~~~~~~~gi~~sV~~DI~~il~gKs~~ 374 (690)
.+||++|++||+++. |.+||.+|++||+++|.++++.++..+ +.+.|||+||.+||+.||+|||++
T Consensus 81 ~~dIk~y~~Le~~~~-n~~fW~~~~~v~~del~~~~~~~~~~~-------------~~~~~ih~sV~~dI~~il~gKs~~ 146 (191)
T PF10312_consen 81 LEDIKVYLELERDNK-NREFWEAMLVVCEDELAKLRKKEPEGR-------------AVRSGIHSSVAADIQKILSGKSYE 146 (191)
T ss_pred HHHHHHHHHHccccc-HHHHHHHHHHHHHHHHHHhhccccccc-------------chhhcccHHHHHHHHHHHccCCHH
Confidence 999999999998654 999999999999999999876432111 125899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005571 375 ELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHA 419 (690)
Q Consensus 375 eL~~LE~qI~~KL~Sge~iDveYWE~lL~~L~v~kAka~L~~~h~ 419 (690)
||++||.+|++||.||+++||+|||+||++|+||||||+|+++|+
T Consensus 147 eL~~Le~qI~~KL~s~~~~Dv~YWE~lL~~L~v~kAka~L~~~h~ 191 (191)
T PF10312_consen 147 ELEELEQQIKAKLRSGEAIDVEYWESLLKQLKVFKAKARLREIHQ 191 (191)
T ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999995
No 4
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=97.65 E-value=0.00093 Score=74.38 Aligned_cols=245 Identities=22% Similarity=0.214 Sum_probs=130.9
Q ss_pred chhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCccccccchhhhhhhcCCChhh
Q 005571 99 SDHDHRKRKSSRNITEEEIAEYLAKKAQRKAAKVAKKLRAQKVSGYSNDSNPFGDSNLNERFVWRKKIERDVSQGVPLEE 178 (690)
Q Consensus 99 s~~~~~~~~~~~~~~eek~~~~~~kk~~k~a~~~~~kl~~~~~~gYTne~NPFGD~nLt~~FVW~KK~Eke~~~gls~~e 178 (690)
++...+++++...++.+-..++.+..+.|++.+.+..... .+.++..- |-+|++.||-= .+|-..-.-|.+.+
T Consensus 32 ~~~d~~rr~Kee~k~~e~~EEKrarrm~kK~~K~a~R~~~---~~~d~~~~--~YsN~~npF~D-SnLT~tFvw~kkle- 104 (623)
T KOG2370|consen 32 SDSDGGRRSKEESKSKEYSEEKRARRMSKKAQKKALRAAK---KLKDQSVS--GYSNDSNPFGD-SNLTRTFVWGKKLE- 104 (623)
T ss_pred cccccchhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHh---hccccccc--CccCCCCCccc-ccchhheeccchhh-
Confidence 3444566777777777777788888888887777666543 33333332 88999999954 22222111111111
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhhhcCCCCc
Q 005571 179 FSVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKP 258 (690)
Q Consensus 179 ~~~k~~~~r~~e~~~EiEkvKkRReeRE~Ek~~~Eee~~~l~R~re~~~~~eW~~kEd~FhL~Qak~RS~IRIregRaKP 258 (690)
. +-.+ ---..|+......|-.|+.-. |-+.-+-.|+. . -.+=+.+|++|.+.|--.++.|++++-+.||
T Consensus 105 r----e~~r-gls~~ef~~~~~qrr~renl~---evekvkk~ree-r--~~eka~~Ede~mmlqrar~aa~qf~d~~~ke 173 (623)
T KOG2370|consen 105 R----EGSR-GLSPREFRVSNQQRRARENLP---EVEKVKKRREE-R--REEKAMQEDEFMMLQRARRAAIQFKDWRSKE 173 (623)
T ss_pred h----hccc-CCChhhccHhhHHHHHHhcch---HHHHHHHHHHH-H--HHHHHhhhHHHHHHHHHHHHhhhhccccccc
Confidence 0 0001 012345555554444443211 11111111111 1 0122568999999998888999999999999
Q ss_pred ----chhhhhhccCCCCCCccccCchhhhcCCChHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHhHHHHHHHHHHhH
Q 005571 259 ----IDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDA 334 (690)
Q Consensus 259 ----ID~Lak~l~~~~d~~~e~~eP~~i~~gLt~~dleeL~~DIk~yl~LE~~~~~n~~fW~~m~vicedeL~~~rk~e~ 334 (690)
+|-|-.-|++.++- ..- +-++|.+
T Consensus 174 Fh~dq~KlrseIrl~~Gr-------ak~-----------------------------------idll~~~---------- 201 (623)
T KOG2370|consen 174 FHFDQDKLRSEIRLRPGR-------AKP-----------------------------------IDLLKNY---------- 201 (623)
T ss_pred chhhhHhhhheeeecCCc-------cch-----------------------------------hhHHHhh----------
Confidence 44443333322111 000 1122211
Q ss_pred HHhhhhcCCCCchhhhhhhccCchhHHHHHHhhcCCCCHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHHHHH
Q 005571 335 LDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMR-AGTAKVVEYWEAILKRLHIYKAKAC 413 (690)
Q Consensus 335 ~~~~~~~G~~~~~~~~~~~~gi~~sV~~DI~~il~gKs~~eL~~LE~qI~~KL~-Sge~iDveYWE~lL~~L~v~kAka~ 413 (690)
+.+. .. | .-.-.+=-.+|+|++.++|++|-..|+.-.. -+.+..+.||..|.--..--+++++
T Consensus 202 -----~dfg--------de--l-dmel~eP~~vlkg~~vedlEel~~dIk~y~ele~~~kr~tyW~~v~~iv~delq~~~ 265 (623)
T KOG2370|consen 202 -----IDFG--------DE--L-DMELSEPYSVLKGLKVEDLEELSRDIKDYQELETNQKRLTYWKDVIMIVNDELQHNK 265 (623)
T ss_pred -----hccc--------ch--h-hhhccChHHHHccCCHhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 0000 00 0 0000011268999999999999999988776 3577889999998855554455442
Q ss_pred HH------HHHHHHHHHHHHHh
Q 005571 414 LK------EIHAKMLRKHLQRL 429 (690)
Q Consensus 414 L~------~~h~~~l~~~l~~l 429 (690)
.- .+|+.|-...-..|
T Consensus 266 ~aqnsRgd~~haave~dv~~il 287 (623)
T KOG2370|consen 266 VAQNSRGDKLHAAVEVDVRKIL 287 (623)
T ss_pred hhhhccccceehhhhhhHHHHh
Confidence 21 26777665553333
No 5
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=96.18 E-value=0.0061 Score=61.18 Aligned_cols=77 Identities=27% Similarity=0.410 Sum_probs=58.5
Q ss_pred cceeeEEeeccccCCCCCCCcEEEEeC------CCCCCeEEEEEecCCCCcceeeeeecccccccCCCcccccc-c--cc
Q 005571 605 VQGYKFNIFYPDLVDKTKAPTYTIEKD------GSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTF-E--RG 675 (690)
Q Consensus 605 VQGYKFNIFYPDLIDKtkaPty~ie~~------~~~~dtciIRF~AGPPYEDIAFrIVnrEWeyS~KrGFr~~F-d--rG 675 (690)
-||--|-|=||+..+ ...|.|.+... +-+..+--|.|-| -|||-|||+|-++|-+.|.- =.|+| | -+
T Consensus 129 q~~L~fQv~Yp~i~~-~~~Pr~rfmssyeq~ve~~dk~~qyLvfaa-ePyE~Iafk~p~~Eid~se~--Kf~t~wd~~tk 204 (222)
T KOG0227|consen 129 QQGLLFQVNYPEIEE-GIMPRHRFMSSYEQKVEPPDKSWQYLVFAA-EPYENIAFKVPSREIDKSEG--KFWTHWDAETK 204 (222)
T ss_pred ceeeEEEecchhhhh-ccCCcchhhhhhHhhcCCccccceEEEEEe-ccccceeeecCchhhhhccC--ceeeeecCCCc
Confidence 389999999999875 55788877644 1133577787754 68999999999999998863 34565 3 46
Q ss_pred eEEEEEeecc
Q 005571 676 ILHVYFNFKR 685 (690)
Q Consensus 676 ILqL~FnFKr 685 (690)
.+.|+|.||.
T Consensus 205 ~y~lqF~fk~ 214 (222)
T KOG0227|consen 205 QYTLQFFFKQ 214 (222)
T ss_pred eEEEEEEecc
Confidence 7999999985
No 6
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=95.85 E-value=0.013 Score=58.48 Aligned_cols=73 Identities=29% Similarity=0.405 Sum_probs=54.7
Q ss_pred ceeeEEeeccccCCCCCCCcEEEEeCC------CCCCeEEEEEecCCCCcceeeeeecccccccCCCccccccc---cce
Q 005571 606 QGYKFNIFYPDLVDKTKAPTYTIEKDG------SNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFE---RGI 676 (690)
Q Consensus 606 QGYKFNIFYPDLIDKtkaPty~ie~~~------~~~dtciIRF~AGPPYEDIAFrIVnrEWeyS~KrGFr~~Fd---rGI 676 (690)
-|--|-|=|||-. ....|.|.|...- -+..|--|.| |--|||-|||+|-|+|-+++- .|.|= -|.
T Consensus 136 ~Gl~iqvnY~Dd~-a~~~P~yRivs~lEq~ve~~d~~f~yLV~-a~ePyEnIafk~~~~ei~f~s----~~~~wDa~~~t 209 (222)
T COG5246 136 RGLGIQVNYEDDL-AEEMPQYRIVSSLEQNVEEYDESFRYLVF-ACEPYENIAFKFENKEIDFLS----IYEDWDAETGT 209 (222)
T ss_pred eeeEEEEeccchh-hccCcceehhhhhhhcchhhcccceEEEE-EeccccceeeecCCCccchhh----hcccccccCce
Confidence 4888999999743 3467999998541 1234777777 557899999999999988777 78873 467
Q ss_pred EEEEEeec
Q 005571 677 LHVYFNFK 684 (690)
Q Consensus 677 LqL~FnFK 684 (690)
..|.|-|+
T Consensus 210 Yt~qFff~ 217 (222)
T COG5246 210 YTLQFFFL 217 (222)
T ss_pred EEEEEeee
Confidence 77778775
No 7
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=95.80 E-value=0.0067 Score=68.41 Aligned_cols=21 Identities=38% Similarity=0.468 Sum_probs=14.1
Q ss_pred CCCCCCcccceeeEEeeccc-cCC
Q 005571 597 HDNPPPKIVQGYKFNIFYPD-LVD 619 (690)
Q Consensus 597 ~DNPPPKiVQGYKFNIFYPD-LID 619 (690)
..++|.+||+- .|+|+|+ |+|
T Consensus 404 ~~~~~s~v~~l--~N~~~~~~l~~ 425 (509)
T TIGR01642 404 IGGKPTKVVQL--TNLVTGDDLMD 425 (509)
T ss_pred ccCCCceEEEe--ccCCchhHhcC
Confidence 45677788776 4888774 443
No 8
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.60 E-value=0.019 Score=63.10 Aligned_cols=20 Identities=45% Similarity=0.577 Sum_probs=7.7
Q ss_pred CCCCcccccccCCCCCCCCC
Q 005571 69 ESDSSEDDGRRSKSNRRSRD 88 (690)
Q Consensus 69 ~s~~~~~~~~r~~~~~~~r~ 88 (690)
+||+..+++++-+|++++|+
T Consensus 346 RSRs~srerrrRRSrSrsRs 365 (479)
T KOG4676|consen 346 RSRSSSRERRRRRSRSRSRS 365 (479)
T ss_pred ccccchhhhhhhhccccccC
Confidence 44443333333333333333
No 9
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=94.45 E-value=0.029 Score=61.73 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=8.4
Q ss_pred CCCcccccccCCCCCCCCCCCC
Q 005571 70 SDSSEDDGRRSKSNRRSRDSDS 91 (690)
Q Consensus 70 s~~~~~~~~r~~~~~~~r~~d~ 91 (690)
.+.++++++++++.+.|.+.++
T Consensus 353 errrRRSrSrsRspR~skt~~r 374 (479)
T KOG4676|consen 353 ERRRRRSRSRSRSPRTSKTIKR 374 (479)
T ss_pred hhhhhhccccccCCCCCCCCCC
Confidence 3333333333443333333333
No 10
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=93.84 E-value=0.067 Score=57.97 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=7.9
Q ss_pred cccCCCccchhhhhccC
Q 005571 12 RENSSSKRSRSERKRYD 28 (690)
Q Consensus 12 ~~~~~~~~~~~~~~~~~ 28 (690)
..-+.+|++..+..+..
T Consensus 278 s~~s~~kd~k~s~~~~~ 294 (367)
T KOG0835|consen 278 SPVSANKDSKPSPVRTK 294 (367)
T ss_pred CCCCCCccCCCCccccc
Confidence 34444555544444444
No 11
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=93.16 E-value=0.064 Score=61.55 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=3.2
Q ss_pred cccccCCCC
Q 005571 75 DDGRRSKSN 83 (690)
Q Consensus 75 ~~~~r~~~~ 83 (690)
++++++||+
T Consensus 645 rSrs~SRsr 653 (757)
T KOG4368|consen 645 RSRSQSRSR 653 (757)
T ss_pred ccccCCccc
Confidence 333333333
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=93.04 E-value=0.099 Score=59.05 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=5.9
Q ss_pred ChHHHHHHHHH
Q 005571 287 TVKEMEELRDD 297 (690)
Q Consensus 287 t~~dleeL~~D 297 (690)
|.++|.++..+
T Consensus 188 t~~~l~~~F~~ 198 (509)
T TIGR01642 188 VEEAVVDFFND 198 (509)
T ss_pred CHHHHHHHHHH
Confidence 45555555544
No 13
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=92.12 E-value=0.097 Score=58.40 Aligned_cols=11 Identities=18% Similarity=0.477 Sum_probs=6.1
Q ss_pred CChHHHHHHHH
Q 005571 286 LTVKEMEELRD 296 (690)
Q Consensus 286 Lt~~dleeL~~ 296 (690)
+|.++|.+|..
T Consensus 198 ~te~~l~~~f~ 208 (457)
T TIGR01622 198 ITEQELRQIFE 208 (457)
T ss_pred CCHHHHHHHHH
Confidence 45566665554
No 14
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.54 E-value=0.099 Score=60.63 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=9.1
Q ss_pred CcCCCCCcccccccCCCCCCC
Q 005571 66 HDRESDSSEDDGRRSKSNRRS 86 (690)
Q Consensus 66 ~~~~s~~~~~~~~r~~~~~~~ 86 (690)
++|++||+.-++.|++|+.+|
T Consensus 769 ~~rhhRS~~~~r~R~sSrd~H 789 (878)
T KOG1847|consen 769 RSRHHRSRKHERHRDSSRDEH 789 (878)
T ss_pred ccccccCcccccccccccCch
Confidence 334444444344444444444
No 15
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=90.56 E-value=0.2 Score=54.39 Aligned_cols=6 Identities=50% Similarity=0.949 Sum_probs=2.3
Q ss_pred hhhccC
Q 005571 23 ERKRYD 28 (690)
Q Consensus 23 ~~~~~~ 28 (690)
.+|.|+
T Consensus 313 ~rd~~~ 318 (453)
T KOG2888|consen 313 KRDYYD 318 (453)
T ss_pred hhhhhh
Confidence 333333
No 16
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.84 E-value=56 Score=39.89 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCc-------cHHHHHHHHHHHHHHHHH
Q 005571 373 HKELEALQTKIELQMRAGTAK-------VVEYWEAILKRLHIYKAK 411 (690)
Q Consensus 373 ~~eL~~LE~qI~~KL~Sge~i-------DveYWE~lL~~L~v~kAk 411 (690)
-++|++|++.++.||.-=+-. -.+|--.+|..=..|++.
T Consensus 548 kdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e 593 (1118)
T KOG1029|consen 548 KDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNE 593 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999632211 234555566666667743
No 17
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins. It contains two of three predicted coiled-coil motifs. Most proteins containing this domain also have IPR019134 from INTERPRO at the C-terminal end. Upstream of this domain in Drosophila proteins are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo [].
Probab=86.70 E-value=1.4 Score=44.83 Aligned_cols=46 Identities=28% Similarity=0.437 Sum_probs=35.7
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHHH
Q 005571 366 NLLDGKTHKELEALQTKIELQMR-AGTAKVVEYWEAILKRLHIYKAK 411 (690)
Q Consensus 366 ~il~gKs~~eL~~LE~qI~~KL~-Sge~iDveYWE~lL~~L~v~kAk 411 (690)
.||.|-|.++|++|..+|+.-+. -+.+...+||++|+--..-..++
T Consensus 67 ~i~~gL~~~dleeL~~dIk~y~~Le~~~~n~~fW~~~~~v~~del~~ 113 (191)
T PF10312_consen 67 TIFEGLSLEDLEELLEDIKVYLELERDNKNREFWEAMLVVCEDELAK 113 (191)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998886 23334899999987544443333
No 18
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=84.99 E-value=1.2 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=12.8
Q ss_pred CcCcccccccCCCccchhhhhccCC
Q 005571 5 GKTSKSKRENSSSKRSRSERKRYDD 29 (690)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (690)
.+.+++.+.++++-+.++.+++++.
T Consensus 58 ~~~s~~~~~~~~s~~r~r~r~r~rs 82 (549)
T KOG0147|consen 58 SGKSSSDFPNERSYHRPRDRERYRS 82 (549)
T ss_pred CCccCCCCcccccccCCCCchhhcc
Confidence 3445555555555555555555444
No 19
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=83.77 E-value=0.7 Score=52.88 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q 005571 150 PFGDSNLN 157 (690)
Q Consensus 150 PFGD~nLt 157 (690)
|-+|..||
T Consensus 497 par~qa~t 504 (653)
T KOG2548|consen 497 PARDQALT 504 (653)
T ss_pred ccccccce
Confidence 33333333
No 20
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=71.04 E-value=1.5 Score=43.91 Aligned_cols=13 Identities=15% Similarity=0.279 Sum_probs=6.7
Q ss_pred CCCCCCCCccccc
Q 005571 150 PFGDSNLNERFVW 162 (690)
Q Consensus 150 PFGD~nLt~~FVW 162 (690)
|.++++..+..+-
T Consensus 162 kv~g~dV~~v~~v 174 (196)
T KOG3263|consen 162 KVGGSDVGGVYKV 174 (196)
T ss_pred cccCcccchhhhh
Confidence 5555555554444
No 21
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=69.48 E-value=4.7 Score=40.03 Aligned_cols=10 Identities=10% Similarity=0.418 Sum_probs=4.5
Q ss_pred cccccCCCCC
Q 005571 140 KVSGYSNDSN 149 (690)
Q Consensus 140 ~~~gYTne~N 149 (690)
...|+..|-|
T Consensus 134 Gf~gF~TTKg 143 (180)
T PF08648_consen 134 GFGGFGTTKG 143 (180)
T ss_pred cccccccCCC
Confidence 3445544444
No 22
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=69.17 E-value=9.7 Score=44.53 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=28.6
Q ss_pred cccCCCCCCCCcccceeeEEeeccccCCCCCCCcEEEEeCCC-CC--CeEEEEEecCCCCcceeeeeec
Q 005571 592 QTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGS-NG--ETCIIRFHAGPPYEDIAFKIVN 657 (690)
Q Consensus 592 QTHYD~DNPPPKiVQGYKFNIFYPDLIDKtkaPty~ie~~~~-~~--dtciIRF~AGPPYEDIAFrIVn 657 (690)
-+|||+| ||..|-+. || .|-.=++..... .| |+ .-..+|+|-|.|=-|+||-
T Consensus 666 dqHFD~d-----------~nf~~~e~-D~-vT~r~~~~vm~~vkPtkdl-~s~l~~~q~~~deq~~~~~ 720 (752)
T KOG0670|consen 666 DQHFDQD-----------LNFLYIEV-DK-VTEREKRTVMVNVKPTKDL-GSELIAVQRLPDEQPKIVQ 720 (752)
T ss_pred hhhcccc-----------cceEEEec-cc-cccceeEEEecccCcchhH-HHHHhccCCCCchhHHHHH
Confidence 4799987 78888764 33 222222222211 11 11 1124588888888888773
No 23
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=59.54 E-value=6.3 Score=45.52 Aligned_cols=10 Identities=30% Similarity=0.518 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 005571 191 RMAEIEKVKK 200 (690)
Q Consensus 191 ~~~EiEkvKk 200 (690)
..++++|+-+
T Consensus 583 k~a~q~kteq 592 (653)
T KOG2548|consen 583 KVAKQEKTEQ 592 (653)
T ss_pred hHHHHHHHHH
Confidence 4445555444
No 24
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=55.35 E-value=11 Score=44.07 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=9.2
Q ss_pred HHHHHHHHhhCCCcc
Q 005571 380 QTKIELQMRAGTAKV 394 (690)
Q Consensus 380 E~qI~~KL~Sge~iD 394 (690)
|-+|-.||..-.+-|
T Consensus 478 EleiLkKL~~AD~Ed 492 (752)
T KOG0670|consen 478 ELEILKKLNDADPED 492 (752)
T ss_pred HHHHHHHhhccCchh
Confidence 346778887544444
No 25
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=49.80 E-value=3.1e+02 Score=32.80 Aligned_cols=8 Identities=25% Similarity=0.704 Sum_probs=4.6
Q ss_pred cHHHHHHH
Q 005571 311 HVEYWEAL 318 (690)
Q Consensus 311 n~~fW~~m 318 (690)
+-.||-.-
T Consensus 727 dDaYwpe~ 734 (940)
T KOG4661|consen 727 DDAYWPES 734 (940)
T ss_pred ccccCchh
Confidence 44688443
No 26
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=47.36 E-value=25 Score=30.23 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=10.4
Q ss_pred CCccHHHHHHHH
Q 005571 391 TAKVVEYWEAIL 402 (690)
Q Consensus 391 e~iDveYWE~lL 402 (690)
+..|..||+.||
T Consensus 20 ~~~~~~yWe~LL 31 (66)
T PF06465_consen 20 ESTDPNYWEKLL 31 (66)
T ss_pred cccchHHHHHHH
Confidence 457999999999
No 27
>KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription]
Probab=46.84 E-value=22 Score=40.05 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=8.8
Q ss_pred cccCCCccchhhhhccCC
Q 005571 12 RENSSSKRSRSERKRYDD 29 (690)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (690)
++++.++|.+.+++-+++
T Consensus 299 kK~~~~~hn~sdS~~~~~ 316 (453)
T KOG3794|consen 299 KKNSVSGHNSSDSSEKDK 316 (453)
T ss_pred hcccccccCCccchhhcc
Confidence 445555555544444443
No 28
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=45.44 E-value=1e+02 Score=39.07 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=15.8
Q ss_pred CCCCCCCCCC----------Cccccccchhhhhh
Q 005571 147 DSNPFGDSNL----------NERFVWRKKIERDV 170 (690)
Q Consensus 147 e~NPFGD~nL----------t~~FVW~KK~Eke~ 170 (690)
..+|.+|..+ +-+-.|++.++++.
T Consensus 401 ~s~p~~d~~~~~s~~~~~~~~~~g~~g~r~eke~ 434 (1021)
T PTZ00266 401 ASVPSKDDRKYPQDGATHCHAVNGHYGGRVDKDH 434 (1021)
T ss_pred ccCCcccccccccccccccccccCccccccchhH
Confidence 4567777754 24567888887765
No 29
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=37.28 E-value=62 Score=27.18 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=27.8
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005571 396 EYWEAIL-----KRLHIYKAKACLKEIHAKMLRKHLQRLE 430 (690)
Q Consensus 396 eYWE~lL-----~~L~v~kAka~L~~~h~~~l~~~l~~l~ 430 (690)
+||+++. ..+++|.|=-.--+.|-.||..|+..+.
T Consensus 1 eyW~~~~~vip~~~~~~W~~L~~~l~rY~~vL~~R~~l~~ 40 (60)
T PF14775_consen 1 EYWERLANVIPDEKIRLWDALENFLKRYNKVLLDRAALIQ 40 (60)
T ss_pred CHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899888 6788898887777778888888877654
No 30
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=35.69 E-value=50 Score=27.77 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=28.9
Q ss_pred ccccccccccccCCCCCCCCcccceeeEEeeccccCCCCCCCcEEEEeCCCCCCeEEEE
Q 005571 583 TGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIR 641 (690)
Q Consensus 583 TGyEWNKYNQTHYD~DNPPPKiVQGYKFNIFYPDLIDKtkaPty~ie~~~~~~dtciIR 641 (690)
-||-|-||.|-+.. .||-|.- | |--=+ +..-.-+=.|+++.+++.+.+|.
T Consensus 3 DGy~WRKYGQK~ik-gs~~pRs---Y-YrCt~----~~~C~a~K~Vq~~~~d~~~~~vt 52 (59)
T smart00774 3 DGYQWRKYGQKVIK-GSPFPRS---Y-YRCTY----SQGCPAKKQVQRSDDDPSVVEVT 52 (59)
T ss_pred CcccccccCcEecC-CCcCcce---E-Eeccc----cCCCCCcccEEEECCCCCEEEEE
Confidence 59999999998775 5566643 3 22222 23334444567765555444443
No 31
>PF01701 PSI_PsaJ: Photosystem I reaction centre subunit IX / PsaJ; InterPro: IPR002615 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. This family consists of the photosystem I reaction centre subunit IX or PsaJ from various organisms including Synechocystis sp. (strain PCC 6803), Pinus thunbergii (Green pine) and Zea mays (Maize). PsaJ (P19443 from SWISSPROT) is a small 4.4kDa, chloroplast encoded, hydrophobic subunit of the photosystem I reaction complex whose function is not yet fully understood []. PsaJ can be cross-linked to PsaF (P12356 from SWISSPROT) and has a single predicted transmembrane domain. It has a proposed role in maintaing PsaF in the correct orientation to allow for fast electron transfer from soluble donor proteins to P700+ [].; GO: 0015979 photosynthesis, 0009522 photosystem I; PDB: 2WSF_J 2WSC_J 2O01_J 2WSE_J 1JB0_J 3PCQ_J 3LW5_J.
Probab=35.04 E-value=8.8 Score=29.42 Aligned_cols=10 Identities=50% Similarity=1.125 Sum_probs=6.6
Q ss_pred eEEeeccccC
Q 005571 609 KFNIFYPDLV 618 (690)
Q Consensus 609 KFNIFYPDLI 618 (690)
.||-||||+.
T Consensus 28 EiNRffPD~L 37 (37)
T PF01701_consen 28 EINRFFPDLL 37 (37)
T ss_dssp SSTTTSTS-S
T ss_pred HHHHhCCCcC
Confidence 3788888874
No 32
>PF13983 YsaB: YsaB-like lipoprotein
Probab=33.49 E-value=24 Score=30.72 Aligned_cols=18 Identities=44% Similarity=1.071 Sum_probs=12.9
Q ss_pred cCCCccccccc-cc-eEEEE
Q 005571 663 SHKKGFKCTFE-RG-ILHVY 680 (690)
Q Consensus 663 S~KrGFr~~Fd-rG-ILqL~ 680 (690)
+.+-||-|+|| .| .|||-
T Consensus 56 ~r~E~FvCSFD~dGqFLHLS 75 (77)
T PF13983_consen 56 ARKEGFVCSFDADGQFLHLS 75 (77)
T ss_pred ccccceEEeECCCCcEEEee
Confidence 35579999998 45 66663
No 33
>PF00659 POLO_box: POLO box duplicated region; InterPro: IPR000959 A subgroup of serine/threonine protein kinases, Polo or Polo-like kinases play multiple roles during the cell cycle. Polo kinases are required at several key points through mitosis, starting from control of the G2/M transition through phosphorylation of Cdc25C and mitotic cyclins. Polo kinases are characterised by an amino terminal catalytic domain, and a carboxy terminal non-catalytic domain consisting of three blocks of conserved sequences known as polo boxes which form one single functional domain []. The domain is named after its founding member encoded by the polo gene of Drosophila melanogaster []. This domain of around 70 amino acids has been found in species ranging from yeast to mammals. Polo boxes appear to mediate interaction with multiple proteins through protein:protein interactions; some but not all of these proteins are substrates for the kinase domain of the molecule []. The crystal structure of the polo domain of the murine protein, Sak, is dimeric, consisting of two alpha-helices and two six-stranded beta-sheets []. The topology of one polypeptide subunit of the dimer consists of, from its N- to C terminus, an extended strand segment, five beta-strands, one alpha-helix (A) and a C-terminal beta-strand. Beta-strands from one subunit form a contiguous antiparallel beta-sheet with beta-strands from the second subunit. The two beta-sheets pack with a crossing angle of 110 degrees, orienting the hydrophobic surfaces inward and the hydrophilic surfaces outward. Helix A, which is colinear with beta-strand 6 of the same polypeptide, buries a large portion of the non-overlapping hydrophobic beta-sheet surfaces. Interactions involving helices A comprise a majority of the hydrophobic core structure and also the dimer interface. Point mutations in the Polo box of the budding yeast Cdc5 protein abolish the ability of overexpressed Cdc5 to interact with the spindle poles and to organise cytokinetic structures [].; GO: 0005515 protein binding; PDB: 1MBY_B 3P37_A 3MHN_A 1Q4K_A 3HIK_A 3Q1I_A 3P35_A 3MHQ_A 1UMW_B 3MQ8_B ....
Probab=32.68 E-value=22 Score=29.69 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=19.3
Q ss_pred ccCCCccccccccceEEEEEe
Q 005571 662 YSHKKGFKCTFERGILHVYFN 682 (690)
Q Consensus 662 yS~KrGFr~~FdrGILqL~Fn 682 (690)
|+.|.|+=-.+.+|.+|.+||
T Consensus 1 y~~k~gi~~~LSng~vqv~Fn 21 (68)
T PF00659_consen 1 YRTKYGIGYQLSNGTVQVNFN 21 (68)
T ss_dssp EEECSEEEEEETTSEEEEEET
T ss_pred CccceEEEEEEeCCCEEEEEe
Confidence 678999999999999999986
No 34
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=32.35 E-value=35 Score=41.49 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=17.0
Q ss_pred cccccchhhhhhhcCCChhhhhHHHHHHhhHHHHHHHHHHHH
Q 005571 159 RFVWRKKIERDVSQGVPLEEFSVKAEKKRQRERMAEIEKVKK 200 (690)
Q Consensus 159 ~FVW~KK~Eke~~~gls~~e~~~k~~~~r~~e~~~EiEkvKk 200 (690)
+=.|-+++.+...+ .+.....|..-||+.|+-
T Consensus 422 rTLwvG~i~k~v~e----------~dL~~~feefGeiqSi~l 453 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTE----------QDLANLFEEFGEIQSIIL 453 (894)
T ss_pred eeeeeccccchhhH----------HHHHHHHHhcccceeEee
Confidence 56787666653221 122344566666766653
No 35
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=31.83 E-value=5.2e+02 Score=31.06 Aligned_cols=11 Identities=36% Similarity=0.468 Sum_probs=4.8
Q ss_pred ccccCCCccch
Q 005571 11 KRENSSSKRSR 21 (690)
Q Consensus 11 ~~~~~~~~~~~ 21 (690)
+++..++++.+
T Consensus 500 kkek~s~~dr~ 510 (940)
T KOG4661|consen 500 KKEKGSKKDRD 510 (940)
T ss_pred ccccccccccc
Confidence 34444444443
No 36
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=30.05 E-value=2.8e+02 Score=29.17 Aligned_cols=30 Identities=40% Similarity=0.483 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHhhHHHHHHH
Q 005571 190 ERMAEIEKVKKRREERALE--KARHEEEMALL 219 (690)
Q Consensus 190 e~~~EiEkvKkRReeRE~E--k~~~Eee~~~l 219 (690)
.-.+|+|.-++++++++.+ +.++|+|.+..
T Consensus 165 klfae~erkRk~~e~r~~~eRkr~re~eIeae 196 (250)
T KOG1150|consen 165 KLFAELERKRKELEARANEERKRQREEEIEAE 196 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3457788888888888866 34455554443
No 37
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=30.02 E-value=26 Score=42.72 Aligned_cols=30 Identities=13% Similarity=-0.003 Sum_probs=13.9
Q ss_pred ccccCCCCCCcccccccccccccccccccCCCC
Q 005571 566 WHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHD 598 (690)
Q Consensus 566 W~dKYRPRKPrYFNRVhTGyEWNKYNQTHYD~D 598 (690)
-.++---++-.++|-|. .-.+-||.|=+-|
T Consensus 1008 ~~~~vv~~~~~~v~~~~---~m~~~~q~eee~d 1037 (1194)
T KOG4246|consen 1008 KTKEVVGSKEVTVGEAV---NMEVENQDEEEDD 1037 (1194)
T ss_pred hhcceeeecchhhhhhh---hhhhhhcchhhcc
Confidence 34444455555555432 1234466665443
No 38
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.96 E-value=4.6e+02 Score=32.65 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=12.9
Q ss_pred CCChHHHHHHHHHHHHHHh
Q 005571 285 GLTVKEMEELRDDIKMYLD 303 (690)
Q Consensus 285 gLt~~dleeL~~DIk~yl~ 303 (690)
.|.+.++..|...|+.|.+
T Consensus 482 e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 482 ELMISEIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556777788888876633
No 39
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=28.07 E-value=41 Score=35.82 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=5.3
Q ss_pred cCCCCCCcccch
Q 005571 41 YNSSDESPERSS 52 (690)
Q Consensus 41 ~~~rd~~~~R~~ 52 (690)
|..+|+++.|.+
T Consensus 33 ~~~r~~~~~~~r 44 (293)
T KOG1882|consen 33 SGRRDKSPRRKR 44 (293)
T ss_pred ccccccCccccc
Confidence 444454444433
No 40
>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.
Probab=27.06 E-value=1.1e+02 Score=29.41 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=35.1
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHHhhCCCc-cHHHHHH--HHHHHHHHHHH
Q 005571 364 VRNLLDGKTHKELEALQTKIELQMRAGTAK-VVEYWEA--ILKRLHIYKAK 411 (690)
Q Consensus 364 I~~il~gKs~~eL~~LE~qI~~KL~Sge~i-DveYWE~--lL~~L~v~kAk 411 (690)
+..++.|||.+|+..|-..+.+.|.+++.. +.+=|.. +|.-++.|.+|
T Consensus 71 ~~e~i~Gk~~~ea~~l~~~~~~ml~~~~~~~~~~~l~dl~~l~~v~~~p~R 121 (137)
T TIGR01994 71 MTELIKGKTVEEALSLVEAFSEMIQGQETDEDEEKLGDAEALAGVAKFPAR 121 (137)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCCCCccccccchHHHhhccccCcch
Confidence 347999999999999999999999877543 3345663 44445556665
No 41
>PRK02733 photosystem I reaction center subunit IX; Provisional
Probab=26.88 E-value=11 Score=29.57 Aligned_cols=9 Identities=67% Similarity=1.427 Sum_probs=6.6
Q ss_pred EEeeccccC
Q 005571 610 FNIFYPDLV 618 (690)
Q Consensus 610 FNIFYPDLI 618 (690)
||-|||||+
T Consensus 29 iNRffPD~L 37 (42)
T PRK02733 29 FNRFFPDLL 37 (42)
T ss_pred HHHhCchHh
Confidence 677888875
No 42
>CHL00105 psaJ photosystem I subunit IX
Probab=25.95 E-value=13 Score=29.31 Aligned_cols=9 Identities=44% Similarity=1.014 Sum_probs=6.7
Q ss_pred EEeeccccC
Q 005571 610 FNIFYPDLV 618 (690)
Q Consensus 610 FNIFYPDLI 618 (690)
||-||||++
T Consensus 29 iNRffPD~L 37 (42)
T CHL00105 29 INRFFPDAL 37 (42)
T ss_pred HHHhCChhh
Confidence 677888875
No 43
>smart00061 MATH meprin and TRAF homology.
Probab=25.86 E-value=69 Score=26.89 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=38.6
Q ss_pred CCCCCCCcccceeeEEee-ccccCCCCCCCcEEEEeCCCCCCeEEEEEecCCCCcceeeeeecccccccCCCcccccccc
Q 005571 596 DHDNPPPKIVQGYKFNIF-YPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFER 674 (690)
Q Consensus 596 D~DNPPPKiVQGYKFNIF-YPDLIDKtkaPty~ie~~~~~~dtciIRF~AGPPYEDIAFrIVnrEWeyS~KrGFr~~Fdr 674 (690)
+.-.-||..|-||++-|- ||+ ..--..+|.-........ ..+..-.+.|+|||..-.- +...+.+.|..
T Consensus 16 ~~~~S~~f~~~g~~W~i~~~p~----~~~lsl~L~~~~~~~~~~-----~w~v~a~~~~~l~~~~~~~-~~~~~~~~F~~ 85 (95)
T smart00061 16 ESYFSPSEEHFNIPWRLKIYRK----NGFLSLYLHCEKEECDSR-----KWSIEAEFTLKLVSQNGKS-LSKKDKHVFEK 85 (95)
T ss_pred ceEeCChhEEcCceeEEEEEEc----CCEEEEEEEeCCCcCCCC-----CeEEEEEEEEEEEeCCCCE-EeeeeeEEEcC
Confidence 444567888999999985 888 111223343322111100 2234457889999987432 23334666765
Q ss_pred c
Q 005571 675 G 675 (690)
Q Consensus 675 G 675 (690)
+
T Consensus 86 ~ 86 (95)
T smart00061 86 P 86 (95)
T ss_pred C
Confidence 3
No 44
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=24.59 E-value=53 Score=38.30 Aligned_cols=10 Identities=40% Similarity=0.757 Sum_probs=5.6
Q ss_pred cccccccCCC
Q 005571 563 VYWWHDKYRP 572 (690)
Q Consensus 563 ~y~W~dKYRP 572 (690)
.|.=.|||--
T Consensus 487 sYydeDkY~~ 496 (500)
T KOG0120|consen 487 SYYDEDKYHA 496 (500)
T ss_pred EecCHHHhhc
Confidence 4666666643
No 45
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.24 E-value=80 Score=34.49 Aligned_cols=16 Identities=6% Similarity=-0.149 Sum_probs=10.4
Q ss_pred cCCCCHHHHHHHHHHH
Q 005571 368 LDGKTHKELEALQTKI 383 (690)
Q Consensus 368 l~gKs~~eL~~LE~qI 383 (690)
|.|+++.-+...=..+
T Consensus 220 f~g~~~~G~i~ai~~~ 235 (313)
T KOG3088|consen 220 FPGWGLCGWIPAIDVL 235 (313)
T ss_pred cCCcchhhhhhHhhcc
Confidence 7788877766554444
No 46
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=22.96 E-value=3.9e+02 Score=32.57 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005571 395 VEYWEAILKRLHIYKAK 411 (690)
Q Consensus 395 veYWE~lL~~L~v~kAk 411 (690)
..||-+-=++-.|-.|+
T Consensus 492 P~YyGTWrKKS~~Vsar 508 (811)
T KOG4364|consen 492 PGYYGTWRKKSQVVSAR 508 (811)
T ss_pred CcccccccccccccccC
Confidence 45665555555555554
No 47
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=22.37 E-value=1.6e+02 Score=31.29 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005571 189 RERMAEIEKVKKRREERALE 208 (690)
Q Consensus 189 ~e~~~EiEkvKkRReeRE~E 208 (690)
.+-|+||+|||+-|++..+.
T Consensus 149 ~~Ll~ELekIKkER~ee~~~ 168 (244)
T PF04889_consen 149 AALLRELEKIKKERAEEKAR 168 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45679999998866665533
No 48
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=22.12 E-value=3.1e+02 Score=29.29 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhhhhhcCCCCcchh
Q 005571 215 EMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDV 261 (690)
Q Consensus 215 e~~~l~R~re~~~~~eW~~kEd~FhL~Qak~RS~IRIregRaKPID~ 261 (690)
......++.....|.+|+.+ ..+|+||+-+
T Consensus 213 ~e~~eRk~~ae~A~~~Wl~~-----------------~~~kpkpvp~ 242 (264)
T PF13904_consen 213 QEEQERKEQAEEAFQKWLKN-----------------VKNKPKPVPL 242 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------cccCCCCCCc
Confidence 33445666677889999875 4589999874
No 49
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.94 E-value=24 Score=39.31 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=11.5
Q ss_pred CCCccchhhhhccCCCcccccccc
Q 005571 15 SSSKRSRSERKRYDDSSSELESKS 38 (690)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~ 38 (690)
+.+-++++..+.+..+++..+..+
T Consensus 376 ~~~~~rr~~~e~r~q~~~erdd~r 399 (479)
T KOG0415|consen 376 SESAQRRSPGEGRHQHSDERDDGR 399 (479)
T ss_pred cchhhhcCccccccccchhhhhhh
Confidence 334444444455555555555443
No 50
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=21.70 E-value=67 Score=39.48 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=5.2
Q ss_pred HHHHHHHHhHHH
Q 005571 314 YWEALMVVCDWE 325 (690)
Q Consensus 314 fW~~m~vicede 325 (690)
-|.++-...+|+
T Consensus 581 v~~clp~~~ew~ 592 (1194)
T KOG4246|consen 581 VSECLPSFDEWR 592 (1194)
T ss_pred hHhhccchhhHH
Confidence 344444444443
Done!