Query 005571
Match_columns 690
No_of_seqs 165 out of 228
Neff 5.1
Searched_HMMs 13730
Date Tue Mar 26 18:17:00 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005571.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2079-2083//hhsearch_scop/005571hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ogqa1 d.223.1.2 (A:371-494) 31.2 10 0.00074 13.4 1.8 27 656-682 41-67 (124)
2 d1wj2a_ g.79.1.1 (A:) WRKY DNA 9.3 31 0.0023 9.6 2.9 52 581-642 10-61 (71)
3 d1sxjd2 c.37.1.20 (D:26-262) R 5.7 52 0.0038 7.9 -0.3 33 368-402 164-196 (237)
4 d1su0b_ d.224.1.2 (B:) IscU ho 5.3 66 0.0048 7.2 3.2 50 362-411 68-119 (136)
5 d1oywa1 a.4.5.43 (A:407-516) D 5.0 71 0.0051 6.9 1.2 44 364-407 29-72 (110)
6 d1sxje2 c.37.1.20 (E:4-255) Re 4.9 72 0.0052 6.8 0.9 9 566-574 1-9 (252)
7 d1u94a1 c.37.1.11 (A:6-268) Re 3.7 1E+02 0.0075 5.6 0.8 64 591-676 188-263 (263)
8 d1jmxa5 b.61.4.1 (A:163-281) Q 3.3 1.2E+02 0.0085 5.2 0.2 7 581-587 70-76 (119)
9 d1p0ia_ c.69.1.1 (A:) Butyryl 3.0 77 0.0056 6.6 -1.2 37 581-617 472-526 (526)
10 d2nnua1 b.91.1.1 (A:1-200) E2 3.0 1.3E+02 0.0095 4.8 4.7 38 374-411 6-47 (200)
No 1
>d2ogqa1 d.223.1.2 (A:371-494) Serine/threonine-protein kinase plk C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.24 E-value=10 Score=13.37 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=11.3
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 044324357876431113635799975
Q 005571 656 VNKEWEYSHKKGFKCTFERGILHVYFN 682 (690)
Q Consensus 656 VnrEWeyS~KrGFr~~F~rGILqL~Fn 682 (690)
|-|=||||.|.||=-+..+|..+..||
T Consensus 41 V~KWvDYS~KyGlgY~LSdgtvGV~FN 67 (124)
T d2ogqa1 41 VSKWVDYSDKYGLGYQLCDNSVGVLFN 67 (124)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred EEEEEECCCCCEEEEEECCCCEEEEEE
T ss_conf 675242378746899974994899994
No 2
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.33 E-value=31 Score=9.61 Aligned_cols=52 Identities=21% Similarity=0.492 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCEEEEEE
Q ss_conf 22464343344455899999984222025776426667999997079984899997399998
Q 005571 581 VHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRF 642 (690)
Q Consensus 581 VhTGyEWNKYNQTHYD~DNPPPKvVQGYKFNIFYPDLIDKtkaPty~ie~~~~~~dtciIRF 642 (690)
+--||-|-||-| |.|+|=+|-=+|=-.....-.-+=.++++.+++...++..
T Consensus 10 ~dDGy~WRKYGQ----------K~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY 61 (71)
T d1wj2a_ 10 LDDGYRWRKYGQ----------KVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTY 61 (71)
T ss_dssp CCSSSCBCCCEE----------ECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEE
T ss_pred CCCCCEECCCCC----------EECCCCCCCEEEEECCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 777757242376----------0025998710897845147987442888769999999998
No 3
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.72 E-value=52 Score=7.91 Aligned_cols=33 Identities=15% Similarity=-0.083 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 19999999999999999997418985488999999
Q 005571 368 LDGKTHKELEALQTKIELQMRAGTAKVVEYWEAIL 402 (690)
Q Consensus 368 l~gKs~~eL~~LE~qI~~KL~Sge~iDveYWE~lL 402 (690)
|.+-+.+++..+=..|-.+. +-.++-+-.+.+.
T Consensus 164 f~~~~~~~~~~~L~~i~~~e--~i~i~~~~l~~ia 196 (237)
T d1sxjd2 164 FKALDASNAIDRLRFISEQE--NVKCDDGVLERIL 196 (237)
T ss_dssp CCCCCHHHHHHHHHHHHHTT--TCCCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHH--CCCCCHHHHHHHH
T ss_conf 33333321100101145552--6757899999999
No 4
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=5.29 E-value=66 Score=7.15 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=35.1
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH--HHHHHHHHHH
Q ss_conf 9898651999999999999999999741898548899999--9999999999
Q 005571 362 ADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAI--LKRLHIYKAK 411 (690)
Q Consensus 362 ~DI~~il~gKs~~eL~~LE~qI~~KL~Sge~iDveYWE~l--Lk~L~v~kAk 411 (690)
+=+..++.||+.+++..|-..+...|..++.....-|+.+ |.-++-|.+|
T Consensus 68 sil~e~i~gk~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~v~~~p~R 119 (136)
T d1su0b_ 68 SMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQR 119 (136)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCH
T ss_conf 9999999578999999999999998734667732213578985077768611
No 5
>d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=4.99 E-value=71 Score=6.90 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 98651999999999999999999741898548899999999999
Q 005571 364 VRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHI 407 (690)
Q Consensus 364 I~~il~gKs~~eL~~LE~qI~~KL~Sge~iDveYWE~lLk~L~v 407 (690)
|..||.|..-..+.+..-+--.-...|...+..+|..|+.+|.+
T Consensus 29 ivdiL~Gs~~~kI~~~~h~~l~~yG~gk~~~~~~w~~li~qLv~ 72 (110)
T d1oywa1 29 VVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIH 72 (110)
T ss_dssp HHHHHHTCCCHHHHHHTGGGSTTTTTTTTSCHHHHHHHHHHHHH
T ss_pred EHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 03657537648899717885773468488899999999999998
No 6
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.92 E-value=72 Score=6.84 Aligned_cols=9 Identities=67% Similarity=1.590 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q ss_conf 334677899
Q 005571 566 WHDKYRPRK 574 (690)
Q Consensus 566 W~dKYRPRK 574 (690)
|.+||||.+
T Consensus 1 W~eky~P~~ 9 (252)
T d1sxje2 1 WVDKYRPKS 9 (252)
T ss_dssp CTTTTCCCS
T ss_pred CCCCCCCCC
T ss_conf 983538897
No 7
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}
Probab=3.67 E-value=1e+02 Score=5.63 Aligned_cols=64 Identities=22% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCCCCCCCCC--CCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCC---------EEEEEEE-CCCCCCCEEEEEECC
Q ss_conf 4455899999--984222025776426667999997079984899997---------3999984-399985301354044
Q 005571 591 NQTHYDHDNP--PPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGE---------TCIIRFH-AGPPYEDIAFKIVNK 658 (690)
Q Consensus 591 NQTHYD~DNP--PPKvVQGYKFNIFYPDLIDKtkaPty~ie~~~~~~d---------tciIRF~-AGPPYEDIAFrIVnr 658 (690)
||+..+.+.. +|++..|-+==-||++++ ..+.+-.-..+ .|-+..+ .+||++.+-|.|.
T Consensus 188 NQv~~~~~~~~g~~~~~~GG~al~~~~~~r-------l~l~k~~~~k~g~~~iG~~~r~~v~Knr~~~p~~~~~f~i~-- 258 (263)
T d1u94a1 188 NQIRMKIGVMFGNPETTTGGNALKFYASVR-------LDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQIL-- 258 (263)
T ss_dssp EC--------------CTTCSHHHHHCSEE-------EEEEEEEEEESSSSEEEEEEEEEEEEESSBCSCCEEEEEEE--
T ss_pred EEEEECCCCCCCCCCCCCCCCHHHEEEEEE-------EEEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEE--
T ss_conf 789961566568874313413100315899-------99995342003771354699999995898999988999997--
Q ss_pred CCCCCCCCCCCCCCCCCE
Q ss_conf 324357876431113635
Q 005571 659 EWEYSHKKGFKCTFERGI 676 (690)
Q Consensus 659 EWeyS~KrGFr~~F~rGI 676 (690)
|+.||
T Consensus 259 -------------~~~GI 263 (263)
T d1u94a1 259 -------------YGEGI 263 (263)
T ss_dssp -------------TTTEE
T ss_pred -------------CCCCC
T ss_conf -------------38879
No 8
>d1jmxa5 b.61.4.1 (A:163-281) Quinohemoprotein amine dehydrogenase A chain, domain 3 {Pseudomonas putida [TaxId: 303]}
Probab=3.33 E-value=1.2e+02 Score=5.23 Aligned_cols=7 Identities=57% Similarity=1.535 Sum_probs=0.0
Q ss_pred CCCCCCC
Q ss_conf 2246434
Q 005571 581 VHTGYEW 587 (690)
Q Consensus 581 VhTGyEW 587 (690)
|-|||||
T Consensus 70 vYtGyEW 76 (119)
T d1jmxa5 70 LYNGYEW 76 (119)
T ss_dssp EETTTEE
T ss_pred EECCEEE
T ss_conf 8626078
No 9
>d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.03 E-value=77 Score=6.59 Aligned_cols=37 Identities=16% Similarity=0.521 Sum_probs=0.0
Q ss_pred CCCC---------CCCCCCCCCCCCC---CCCCCCCCCEEE------EEEECCCC
Q ss_conf 2246---------4343344455899---999984222025------77642666
Q 005571 581 VHTG---------YEWNKYNQTHYDH---DNPPPKIVQGYK------FNIFYPDL 617 (690)
Q Consensus 581 VhTG---------yEWNKYNQTHYD~---DNPPPKvVQGYK------FNIFYPDL 617 (690)
++|| -+|..||+...-+ +.+++.++++|. .|=|||.|
T Consensus 472 aktGdPn~~~~~~~~Wp~y~~~~~~~l~i~~~~~~~~~~~~~~~~~fW~~~~p~l 526 (526)
T d1p0ia_ 472 AKYGNPQETQNQSTSWPVFKSTEQKYLTLNTESTRIMTKLRAQQCRFWTSFFPKV 526 (526)
T ss_dssp HHHSCCCCTTTTCCCCCCCCTTTCEEEEECSSCCCEEESTTHHHHHHHHTTTTCC
T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEECCCCCHHHHHHHHHHHCCC
T ss_conf 1808899998889999996799878799899987402475899999999885049
No 10
>d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain {Human papillomavirus type 16 [TaxId: 333760]}
Probab=3.02 E-value=1.3e+02 Score=4.83 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH--HCCCCC-HHHHHHHH-HHHHHHHHH
Q ss_conf 999999999999974--189854-88999999-999999999
Q 005571 374 KELEALQTKIELQMR--AGTAKV-VEYWEAIL-KRLHIYKAK 411 (690)
Q Consensus 374 ~eL~~LE~qI~~KL~--Sge~iD-veYWE~lL-k~L~v~kAk 411 (690)
+-|.+||.+|-.-++ |..-.| ++||+.|= ..+..|+||
T Consensus 6 ~RLda~Qe~~l~lyE~ds~~L~dqi~yW~lvR~E~~Lly~AR 47 (200)
T d2nnua1 6 QRLNVCQDKILTHYENDSTDLRDHIDYWKHMRLECAIYYKAR 47 (200)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999986686348999999999999999999999
Done!