BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005572
(690 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 146/318 (45%), Gaps = 63/318 (19%)
Query: 397 LTFKDLIAATSHFGKESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKG----IDHDDAVA 452
+ ++L A+ +F +++L G G VY+ L VA+K L + + V
Sbjct: 28 FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVE 87
Query: 453 MFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTW 512
M +S H NLL L G+C+ E+L++ +MANG + L E P +P +
Sbjct: 88 M---ISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPL-------- 136
Query: 513 DHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLH-HVGS--THGHLVTSSILLAESLE 569
+W R RIA+G ARGLAYLH H H + ++ILL E E
Sbjct: 137 ----------------DWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFE 180
Query: 570 PKIAGFGLRNI----------GVK-NVG----ERSENETCGPESDVYCFGVILMELLTGK 614
+ FGL + V+ +G E ++DV+ +GV+L+EL+TG+
Sbjct: 181 AVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQ 240
Query: 615 R-------GTDDCV---KWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESL-RVGYLCT 663
R DD V WV+ L+KE +D L+ G+ E VE L +V LCT
Sbjct: 241 RAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQ---GNYKDEEVEQLIQVALLCT 297
Query: 664 ADSPGKRPTMQQVLGLLK 681
SP +RP M +V+ +L+
Sbjct: 298 QSSPMERPKMSEVVRMLE 315
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 146/318 (45%), Gaps = 63/318 (19%)
Query: 397 LTFKDLIAATSHFGKESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKG----IDHDDAVA 452
+ ++L A+ +F +++L G G VY+ L VA+K L + + V
Sbjct: 20 FSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEVE 79
Query: 453 MFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTW 512
M +S H NLL L G+C+ E+L++ +MANG + L E P +P +
Sbjct: 80 M---ISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPL-------- 128
Query: 513 DHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLH-HVGS--THGHLVTSSILLAESLE 569
+W R RIA+G ARGLAYLH H H + ++ILL E E
Sbjct: 129 ----------------DWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFE 172
Query: 570 PKIAGFGL-RNIGVKN----VGERSENETCGPE----------SDVYCFGVILMELLTGK 614
+ FGL + + K+ R PE +DV+ +GV+L+EL+TG+
Sbjct: 173 AVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQ 232
Query: 615 R-------GTDDCV---KWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESL-RVGYLCT 663
R DD V WV+ L+KE +D L+ G+ E VE L +V LCT
Sbjct: 233 RAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQ---GNYKDEEVEQLIQVALLCT 289
Query: 664 ADSPGKRPTMQQVLGLLK 681
SP +RP M +V+ +L+
Sbjct: 290 QSSPMERPKMSEVVRMLE 307
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 127/308 (41%), Gaps = 64/308 (20%)
Query: 401 DLIAATSHFGKESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRL 460
DL AT++F + L+ G G VY+ VL VA+K ++ + LS
Sbjct: 33 DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 461 KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLH--ELPTGEPNVEDWSTDTWDHHPGA 518
+HP+L+ L G+C E +++ ++M NG+L R L+ +LPT
Sbjct: 93 RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPT------------------- 133
Query: 519 GSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLR 578
+W R I IG ARGL YLH H + + +ILL E+ PKI FG+
Sbjct: 134 -------MSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGIS 186
Query: 579 NIGVKNVGE-------RSENETCGPE----------SDVYCFGVILMELLTGK------- 614
G + +G+ + PE SDVY FGV+L E+L +
Sbjct: 187 KKGTE-LGQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSL 245
Query: 615 -RGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLR----VGYLCTADSPGK 669
R + +W + G +D L D + ESLR C A S
Sbjct: 246 PREMVNLAEWAVESHNNGQLEQIVDPNL----ADKIRP--ESLRKFGDTAVKCLALSSED 299
Query: 670 RPTMQQVL 677
RP+M VL
Sbjct: 300 RPSMGDVL 307
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 124/307 (40%), Gaps = 62/307 (20%)
Query: 401 DLIAATSHFGKESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRL 460
DL AT++F + L+ G G VY+ VL VA+K ++ + LS
Sbjct: 33 DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 461 KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLH--ELPTGEPNVEDWSTDTWDHHPGA 518
+HP+L+ L G+C E +++ ++M NG+L R L+ +LPT
Sbjct: 93 RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPT------------------- 133
Query: 519 GSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLR 578
+W R I IG ARGL YLH H + + +ILL E+ PKI FG+
Sbjct: 134 -------MSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGIS 186
Query: 579 NIGVKNVGERSENETCG------PE----------SDVYCFGVILMELLTGK-------- 614
G + G PE SDVY FGV+L E+L +
Sbjct: 187 KKGTELDQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLP 246
Query: 615 RGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLR----VGYLCTADSPGKR 670
R + +W + G +D L D + ESLR C A S R
Sbjct: 247 REMVNLAEWAVESHNNGQLEQIVDPNL----ADKIRP--ESLRKFGDTAVKCLALSSEDR 300
Query: 671 PTMQQVL 677
P+M VL
Sbjct: 301 PSMGDVL 307
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 129/322 (40%), Gaps = 61/322 (18%)
Query: 397 LTFKDLIAATSHFGKESL------LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDA 450
+F +L T++F + + + EG G VY+ + VA+K L I ++
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73
Query: 451 VAMFDE----LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVED 506
FD+ +++ +H NL+ L G+ G + ++ +M NG L L L P
Sbjct: 74 KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPP---- 129
Query: 507 WSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAE 566
+W R +IA G A G+ +LH H + +++ILL E
Sbjct: 130 ---------------------LSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDE 168
Query: 567 SLEPKIAGFGLRNIGVKNVGERSENETCG---------------PESDVYCFGVILMELL 611
+ KI+ FGL K + G P+SD+Y FGV+L+E++
Sbjct: 169 AFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEII 228
Query: 612 TGKRGTDD-------CVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTA 664
TG D+ +E D +D ++ SV M V C
Sbjct: 229 TGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAM---YSVASQCLH 285
Query: 665 DSPGKRPTMQQVLGLLKDIRPS 686
+ KRP +++V LL+++ S
Sbjct: 286 EKKNKRPDIKKVQQLLQEMTAS 307
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 128/322 (39%), Gaps = 61/322 (18%)
Query: 397 LTFKDLIAATSHFGKESL------LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDA 450
+F +L T++F + + + EG G VY+ + VA+K L I ++
Sbjct: 9 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 67
Query: 451 VAMFDE----LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVED 506
FD+ +++ +H NL+ L G+ G + ++ +M NG L L L P
Sbjct: 68 KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPP---- 123
Query: 507 WSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAE 566
+W R +IA G A G+ +LH H + +++ILL E
Sbjct: 124 ---------------------LSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDE 162
Query: 567 SLEPKIAGFGLRNIGVKNVGERSENETCG---------------PESDVYCFGVILMELL 611
+ KI+ FGL K G P+SD+Y FGV+L+E++
Sbjct: 163 AFTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEII 222
Query: 612 TGKRGTDD-------CVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTA 664
TG D+ +E D +D ++ SV M V C
Sbjct: 223 TGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAM---YSVASQCLH 279
Query: 665 DSPGKRPTMQQVLGLLKDIRPS 686
+ KRP +++V LL+++ S
Sbjct: 280 EKKNKRPDIKKVQQLLQEMTAS 301
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 128/322 (39%), Gaps = 61/322 (18%)
Query: 397 LTFKDLIAATSHFGKESL------LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDA 450
+F +L T++F + + + EG G VY+ + VA+K L I ++
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 73
Query: 451 VAMFDE----LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVED 506
FD+ +++ +H NL+ L G+ G + ++ +M NG L L L P
Sbjct: 74 KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPP---- 129
Query: 507 WSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAE 566
+W R +IA G A G+ +LH H + +++ILL E
Sbjct: 130 ---------------------LSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDE 168
Query: 567 SLEPKIAGFGLRNIGVKNVGERSENETCG---------------PESDVYCFGVILMELL 611
+ KI+ FGL K G P+SD+Y FGV+L+E++
Sbjct: 169 AFTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEII 228
Query: 612 TGKRGTDD-------CVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTA 664
TG D+ +E D +D ++ SV M V C
Sbjct: 229 TGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAM---YSVASQCLH 285
Query: 665 DSPGKRPTMQQVLGLLKDIRPS 686
+ KRP +++V LL+++ S
Sbjct: 286 EKKNKRPDIKKVQQLLQEMTAS 307
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 98/227 (43%), Gaps = 39/227 (17%)
Query: 415 LAEGRCGPVYRAVLPGEL------HVAIKVLDNAKGID-HDDAVAMFDELSRLKHPNLLP 467
+ EG G V++A PG L VA+K+L D D ++ +PN++
Sbjct: 55 IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 114
Query: 468 LAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNV------EDWSTDTWDHHPGAGSH 521
L G C GK +L E+MA GDL+ +L + P+ D ST PG
Sbjct: 115 LLGVCAVGKPMCLLFEYMAYGDLNEFLRSM---SPHTVCSLSHSDLSTRARVSSPG---- 167
Query: 522 ISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI 580
P + + IA VA G+AYL H L T + L+ E++ KIA FGL RNI
Sbjct: 168 ---PPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNI 224
Query: 581 GVKNVGERSENETC---------------GPESDVYCFGVILMELLT 612
+ + N+ ESDV+ +GV+L E+ +
Sbjct: 225 YSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFS 271
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 11/218 (5%)
Query: 54 SNPSTPIRELNLSSRNLSGIISWKFLRN-MSELHSIDLSNNSLKGSVPGWFWSTQSLTQV 112
+N S + L+LSS N SG I +N + L + L NN G +P + L +
Sbjct: 361 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 420
Query: 113 NLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLV--KLSQFSKLMVLDVSNNDLR 170
+LS N GTI P+S G ++ L L N + +L L L + NDL
Sbjct: 421 HLSFNYLSGTI---PSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 171 -ILPSGFANLSKLRHLDISSCKISGNI-KPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSG 228
+PSG +N + L + +S+ +++G I K + L +L L +SNNS +G P++
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 229 VKFLNISLNKFTGFVGHDKYQKFGKSA--FIQGGSFVF 264
+ +L+++ N F G + +++ GK A FI G +V+
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 574
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 38/184 (20%)
Query: 90 LSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTN 149
LSN+ + GSV G F + SLT ++LS+N G + + G ++ LN+SSN
Sbjct: 81 LSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPV--TTLTSLGSCSGLKFLNVSSNTLDF 137
Query: 150 LVKLS---QFSKLMVLDVSNNDLR-------ILPSGFANLSKLRHLDISSCKISGNIK-- 197
K+S + + L VLD+S N + +L G +L+HL IS KISG++
Sbjct: 138 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG---ELKHLAISGNKISGDVDVS 194
Query: 198 -----------------PVSFL---HSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLN 237
+ FL +L++LD+S N ++G F + +K LNIS N
Sbjct: 195 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 254
Query: 238 KFTG 241
+F G
Sbjct: 255 QFVG 258
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 9/200 (4%)
Query: 55 NPSTPIRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNL 114
NP ++EL L + +G I L N SEL S+ LS N L G++P S L + L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 446
Query: 115 SKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVK--LSQFSKLMVLDVSNNDLR-I 171
N G I + +++ L L N T + LS + L + +SNN L
Sbjct: 447 WLNMLEGEIPQELMY----VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 172 LPSGFANLSKLRHLDISSCKISGNI-KPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVK 230
+P L L L +S+ SGNI + SL +LD++ N NGT P+ SG
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 562
Query: 231 FLNISLNKFTGFVGHDKYQK 250
N K ++ +D +K
Sbjct: 563 AANFIAGKRYVYIKNDGMKK 582
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 17/224 (7%)
Query: 32 SKAFSSVSTFNISWLKPTNLNGSNPSTPIREL---NLSSRNLSGIISWKFLRNMSELHSI 88
S+A S+ + + + G P P++ L +L+ +G I L +
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 296
Query: 89 DLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFT 148
DLS N G+VP +F S L + LS N F G + P ++VL+LS N F+
Sbjct: 297 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL---PMDTLLKMRGLKVLDLSFNEFS 353
Query: 149 -----NLVKLSQFSKLMVLDVSNNDLR--ILPSGFAN-LSKLRHLDISSCKISGNIKP-V 199
+L LS + L+ LD+S+N+ ILP+ N + L+ L + + +G I P +
Sbjct: 354 GELPESLTNLS--ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 200 SFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFTGFV 243
S L L +S N ++GT PS LS ++ L + LN G +
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 19/188 (10%)
Query: 63 LNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGT 122
L++SS N S I FL + S L +D+S N L G + L +N+S N+F G
Sbjct: 202 LDVSSNNFSTGI--PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 259
Query: 123 IGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQF-----SKLMVLDVSNNDLR-ILPSGF 176
I P P S+Q L+L+ N+FT ++ F L LD+S N +P F
Sbjct: 260 I--PPL----PLKSLQYLSLAENKFTG--EIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 177 ANLSKLRHLDISSCKISGNIKPVSFL--HSLKYLDVSNNSMNGTFPSDFPPLSG-VKFLN 233
+ S L L +SS SG + + L LK LD+S N +G P LS + L+
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 234 ISLNKFTG 241
+S N F+G
Sbjct: 372 LSSNNFSG 379
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 111/280 (39%), Gaps = 53/280 (18%)
Query: 31 VSKAFSSVSTFNISWLKPTNLNGSNPS-----TPIRELNLSSRNLSGIISWKFLRNMSEL 85
+ + V T L +L G PS T + ++LS+ L+G I K++ + L
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENL 513
Query: 86 HSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFP---------- 135
+ LSNNS G++P +SL ++L+ N F GTI ++G
Sbjct: 514 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 573
Query: 136 ------------------------SVQVLNLSSNRFTNLVK----------LSQFSKLMV 161
S Q+ LS+ N+ +M
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 162 LDVSNNDLR-ILPSGFANLSKLRHLDISSCKISGNI-KPVSFLHSLKYLDVSNNSMNGTF 219
LD+S N L +P ++ L L++ ISG+I V L L LD+S+N ++G
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 220 PSDFPPLSGVKFLNISLNKFTGFVGH-DKYQKFGKSAFIQ 258
P L+ + +++S N +G + +++ F + F+
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 41/224 (18%)
Query: 60 IRELNLSSRNLS--GIISWKFLRNMSELHSIDLSNNSLKGS-VPGWFWS--TQSLTQVNL 114
++ LN+SS L G +S ++ L +DLS NS+ G+ V GW S L + +
Sbjct: 125 LKFLNVSSNTLDFPGKVSGGL--KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 182
Query: 115 SKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRF-TNLVKLSQFSKLMVLDVSNNDLR-IL 172
S N+ G + SR +++ L++SSN F T + L S L LD+S N L
Sbjct: 183 SGNKISGDVD---VSR---CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 236
Query: 173 PSGFANLSKLRHLDISSCKISGNIKPVSFLHSLKYL------------------------ 208
+ ++L+ L+ISS + G I P+ L SL+YL
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTG 295
Query: 209 -DVSNNSMNGTFPSDFPPLSGVKFLNISLNKFTGFVGHDKYQKF 251
D+S N G P F S ++ L +S N F+G + D K
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 339
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 11/218 (5%)
Query: 54 SNPSTPIRELNLSSRNLSGIISWKFLRN-MSELHSIDLSNNSLKGSVPGWFWSTQSLTQV 112
+N S + L+LSS N SG I +N + L + L NN G +P + L +
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 113 NLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLV--KLSQFSKLMVLDVSNNDLR 170
+LS N GTI P+S G ++ L L N + +L L L + NDL
Sbjct: 424 HLSFNYLSGTI---PSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 171 -ILPSGFANLSKLRHLDISSCKISGNI-KPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSG 228
+PSG +N + L + +S+ +++G I K + L +L L +SNNS +G P++
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 229 VKFLNISLNKFTGFVGHDKYQKFGKSA--FIQGGSFVF 264
+ +L+++ N F G + +++ GK A FI G +V+
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 38/184 (20%)
Query: 90 LSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTN 149
LSN+ + GSV G F + SLT ++LS+N G + + G ++ LN+SSN
Sbjct: 84 LSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPV--TTLTSLGSCSGLKFLNVSSNTLDF 140
Query: 150 LVKLS---QFSKLMVLDVSNNDLR-------ILPSGFANLSKLRHLDISSCKISGNIK-- 197
K+S + + L VLD+S N + +L G +L+HL IS KISG++
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG---ELKHLAISGNKISGDVDVS 197
Query: 198 -----------------PVSFL---HSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLN 237
+ FL +L++LD+S N ++G F + +K LNIS N
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257
Query: 238 KFTG 241
+F G
Sbjct: 258 QFVG 261
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 88/200 (44%), Gaps = 9/200 (4%)
Query: 55 NPSTPIRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNL 114
NP ++EL L + +G I L N SEL S+ LS N L G++P S L + L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449
Query: 115 SKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVK--LSQFSKLMVLDVSNNDLR-I 171
N G I + +++ L L N T + LS + L + +SNN L
Sbjct: 450 WLNMLEGEIPQELMY----VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 172 LPSGFANLSKLRHLDISSCKISGNI-KPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVK 230
+P L L L +S+ SGNI + SL +LD++ N NGT P+ SG
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
Query: 231 FLNISLNKFTGFVGHDKYQK 250
N K ++ +D +K
Sbjct: 566 AANFIAGKRYVYIKNDGMKK 585
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 105/227 (46%), Gaps = 17/227 (7%)
Query: 32 SKAFSSVSTFNISWLKPTNLNGSNPSTPIREL---NLSSRNLSGIISWKFLRNMSELHSI 88
S+A S+ + + + G P P++ L +L+ +G I L +
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299
Query: 89 DLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFT 148
DLS N G+VP +F S L + LS N F G + P ++VL+LS N F+
Sbjct: 300 DLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL---PMDTLLKMRGLKVLDLSFNEFS 356
Query: 149 -----NLVKLSQFSKLMVLDVSNNDLR--ILPSGFAN-LSKLRHLDISSCKISGNIKP-V 199
+L LS + L+ LD+S+N+ ILP+ N + L+ L + + +G I P +
Sbjct: 357 GELPESLTNLS--ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 200 SFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFTGFVGHD 246
S L L +S N ++GT PS LS ++ L + LN G + +
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 19/188 (10%)
Query: 63 LNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGT 122
L++SS N S I FL + S L +D+S N L G + L +N+S N+F G
Sbjct: 205 LDVSSNNFSTGI--PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262
Query: 123 IGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQF-----SKLMVLDVSNNDLR-ILPSGF 176
I P P S+Q L+L+ N+FT ++ F L LD+S N +P F
Sbjct: 263 I--PPL----PLKSLQYLSLAENKFTG--EIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 177 ANLSKLRHLDISSCKISGNIKPVSFL--HSLKYLDVSNNSMNGTFPSDFPPLSG-VKFLN 233
+ S L L +SS SG + + L LK LD+S N +G P LS + L+
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 234 ISLNKFTG 241
+S N F+G
Sbjct: 375 LSSNNFSG 382
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 16/130 (12%)
Query: 113 NLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLV--KLSQFSKLMVLDVSNNDLR 170
N++ +GG PT N S+ L++S N + + ++ L +L++ +ND+
Sbjct: 614 NITSRVYGGHT--SPTFDNNG--SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669
Query: 171 -ILPSGFANLSKLRHLDISSCKISGNI-KPVSFLHSLKYLDVSNNSMNGTFP-----SDF 223
+P +L L LD+SS K+ G I + +S L L +D+SNN+++G P F
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729
Query: 224 PPLSGVKFLN 233
PP KFLN
Sbjct: 730 PP---AKFLN 736
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 111/280 (39%), Gaps = 53/280 (18%)
Query: 31 VSKAFSSVSTFNISWLKPTNLNGSNPS-----TPIRELNLSSRNLSGIISWKFLRNMSEL 85
+ + V T L +L G PS T + ++LS+ L+G I K++ + L
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENL 516
Query: 86 HSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFP---------- 135
+ LSNNS G++P +SL ++L+ N F GTI ++G
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576
Query: 136 ------------------------SVQVLNLSSNRFTNLVK----------LSQFSKLMV 161
S Q+ LS+ N+ +M
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 162 LDVSNNDLR-ILPSGFANLSKLRHLDISSCKISGNI-KPVSFLHSLKYLDVSNNSMNGTF 219
LD+S N L +P ++ L L++ ISG+I V L L LD+S+N ++G
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 220 PSDFPPLSGVKFLNISLNKFTGFVGH-DKYQKFGKSAFIQ 258
P L+ + +++S N +G + +++ F + F+
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 41/224 (18%)
Query: 60 IRELNLSSRNLS--GIISWKFLRNMSELHSIDLSNNSLKGS-VPGWFWS--TQSLTQVNL 114
++ LN+SS L G +S ++ L +DLS NS+ G+ V GW S L + +
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGL--KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185
Query: 115 SKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRF-TNLVKLSQFSKLMVLDVSNNDLR-IL 172
S N+ G + SR +++ L++SSN F T + L S L LD+S N L
Sbjct: 186 SGNKISGDVD---VSR---CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239
Query: 173 PSGFANLSKLRHLDISSCKISGNIKPVSFLHSLKYL------------------------ 208
+ ++L+ L+ISS + G I P+ L SL+YL
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 209 -DVSNNSMNGTFPSDFPPLSGVKFLNISLNKFTGFVGHDKYQKF 251
D+S N G P F S ++ L +S N F+G + D K
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 127/323 (39%), Gaps = 63/323 (19%)
Query: 397 LTFKDLIAATSHFGKESL------LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDA 450
+F +L T++F + + EG G VY+ + VA+K L I ++
Sbjct: 6 FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEEL 64
Query: 451 VAMFDE----LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVED 506
FD+ ++ +H NL+ L G+ G + ++ + NG L L L P
Sbjct: 65 KQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDGTPP---- 120
Query: 507 WSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAE 566
+W R +IA G A G+ +LH H + +++ILL E
Sbjct: 121 ---------------------LSWHXRCKIAQGAANGINFLHENHHIHRDIKSANILLDE 159
Query: 567 SLEPKIAGFGLRNIGVKNVGERSENETCG---------------PESDVYCFGVILMELL 611
+ KI+ FGL K + G P+SD+Y FGV+L+E++
Sbjct: 160 AFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRGEITPKSDIYSFGVVLLEII 219
Query: 612 TGKRGTDD-------CVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVES-LRVGYLCT 663
TG D+ +E D +D K DS + VE+ V C
Sbjct: 220 TGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYID--KKXNDADSTS--VEAXYSVASQCL 275
Query: 664 ADSPGKRPTMQQVLGLLKDIRPS 686
+ KRP +++V LL++ S
Sbjct: 276 HEKKNKRPDIKKVQQLLQEXTAS 298
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 120/309 (38%), Gaps = 86/309 (27%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE--------LSRLKHP 463
E ++ G G VYRA G+ VA+K A D D+ ++ E + LKHP
Sbjct: 12 EEIIGIGGFGKVYRAFWIGD-EVAVK----AARHDPDEDISQTIENVRQEAKLFAMLKHP 66
Query: 464 NLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHIS 523
N++ L G C+ +++EF G L+R L +G I
Sbjct: 67 NIIALRGVCLKEPNLCLVMEFARGGPLNRVL-----------------------SGKRIP 103
Query: 524 SPEKTNWVTRHRIAIGVARGLAYLHH---VGSTHGHLVTSSILLAESLEP--------KI 572
NW A+ +ARG+ YLH V H L +S+IL+ + +E KI
Sbjct: 104 PDILVNW------AVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKI 157
Query: 573 AGFGL-----RNIGVKNVGERSENETCGPE----------SDVYCFGVILMELLTGK--- 614
FGL R + G + PE SDV+ +GV+L ELLTG+
Sbjct: 158 TDFGLAREWHRTTKMSAAGAYA---WMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPF 214
Query: 615 RGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQ 674
RG D V G + L + + A+++E C P RP+
Sbjct: 215 RGIDGLA------VAYGVAMNKLALPIPSTCPEPFAKLMED------CWNPDPHSRPSFT 262
Query: 675 QVLGLLKDI 683
+L L I
Sbjct: 263 NILDQLTTI 271
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 116/293 (39%), Gaps = 57/293 (19%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE----LSRLKHPNLLPLAG 470
+ G G V+RA G VA+K+L H + V F + RL+HPN++ G
Sbjct: 45 IGAGSFGTVHRAEWHGS-DVAVKILMEQDF--HAERVNEFLREVAIMKRLRHPNIVLFMG 101
Query: 471 YCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
++ E+++ G L+R LH+ +G+ E+ +
Sbjct: 102 AVTQPPNLSIVTEYLSRGSLYRLLHK---------------------SGAR----EQLDE 136
Query: 531 VTRHRIAIGVARGLAYLHHVGS--THGHLVTSSILLAESLEPKIAGFGLRNIGVKN---- 584
R +A VA+G+ YLH+ H +L + ++L+ + K+ FGL +
Sbjct: 137 RRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSS 196
Query: 585 ----------VGERSENETCGPESDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGG 634
E +E +SDVY FGVIL EL T ++ + V G
Sbjct: 197 KSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNP---AQVVAAVGF 253
Query: 635 DALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSA 687
+ VA ++E C + P KRP+ ++ LL+ + SA
Sbjct: 254 KCKRLEIPRNLNPQVAAIIEG------CWTNEPWKRPSFATIMDLLRPLIKSA 300
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 94/224 (41%), Gaps = 43/224 (19%)
Query: 415 LAEGRCGPVYRA----VLPGE--LHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPL 468
L EG G V+ A +LP + + VA+K L A D + L+ L+H +++
Sbjct: 26 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 469 AGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG----AGSHISS 524
G C G+ L++ E+M +GDL+R+L H P AG +
Sbjct: 86 FGVCTEGRPLLMVFEYMRHGDLNRFLR-----------------SHGPDAKLLAGGEDVA 128
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI--- 580
P +A VA G+ YL + H L T + L+ + L KI FG+ R+I
Sbjct: 129 PGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYST 188
Query: 581 GVKNVGERSE------------NETCGPESDVYCFGVILMELLT 612
VG R+ ESDV+ FGV+L E+ T
Sbjct: 189 DYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFT 232
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 90/224 (40%), Gaps = 43/224 (19%)
Query: 415 LAEGRCGPVYRA----VLPGE--LHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPL 468
L EG G V+ A +LP + + VA+K L A D + L+ L+H +++
Sbjct: 49 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 469 AGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG----AGSHISS 524
G C G+ L++ E+M +GDL+R+L H P AG +
Sbjct: 109 FGVCTEGRPLLMVFEYMRHGDLNRFLR-----------------SHGPDAKLLAGGEDVA 151
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN 584
P +A VA G+ YL + H L T + L+ + L KI FG+
Sbjct: 152 PGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYST 211
Query: 585 VGERSENETCGP----------------ESDVYCFGVILMELLT 612
R T P ESDV+ FGV+L E+ T
Sbjct: 212 DYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFT 255
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 94/224 (41%), Gaps = 43/224 (19%)
Query: 415 LAEGRCGPVYRA----VLPGE--LHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPL 468
L EG G V+ A +LP + + VA+K L A D + L+ L+H +++
Sbjct: 20 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 469 AGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG----AGSHISS 524
G C G+ L++ E+M +GDL+R+L H P AG +
Sbjct: 80 FGVCTEGRPLLMVFEYMRHGDLNRFLR-----------------SHGPDAKLLAGGEDVA 122
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI--- 580
P +A VA G+ YL + H L T + L+ + L KI FG+ R+I
Sbjct: 123 PGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYST 182
Query: 581 GVKNVGERSE------------NETCGPESDVYCFGVILMELLT 612
VG R+ ESDV+ FGV+L E+ T
Sbjct: 183 DYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFT 226
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 115/293 (39%), Gaps = 57/293 (19%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE----LSRLKHPNLLPLAG 470
+ G G V+RA G VA+K+L H + V F + RL+HPN++ G
Sbjct: 45 IGAGSFGTVHRAEWHGS-DVAVKILMEQDF--HAERVNEFLREVAIMKRLRHPNIVLFMG 101
Query: 471 YCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
++ E+++ G L+R LH+ +G+ E+ +
Sbjct: 102 AVTQPPNLSIVTEYLSRGSLYRLLHK---------------------SGAR----EQLDE 136
Query: 531 VTRHRIAIGVARGLAYLHHVGS--THGHLVTSSILLAESLEPKIAGFGLRNIGVKN---- 584
R +A VA+G+ YLH+ H L + ++L+ + K+ FGL +
Sbjct: 137 RRRLSMAYDVAKGMNYLHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKASXFLXS 196
Query: 585 ----------VGERSENETCGPESDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGG 634
E +E +SDVY FGVIL EL T ++ + V G
Sbjct: 197 KXAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNP---AQVVAAVGF 253
Query: 635 DALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSA 687
+ VA ++E C + P KRP+ ++ LL+ + SA
Sbjct: 254 KCKRLEIPRNLNPQVAAIIEG------CWTNEPWKRPSFATIMDLLRPLIKSA 300
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 120/286 (41%), Gaps = 43/286 (15%)
Query: 412 ESLLAEGRCGPVYRAVLPGE---LHVAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLL 466
+ ++ EG G V +A + + + AIK + + A DH D + L +L HPN++
Sbjct: 27 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 86
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPE 526
L G C + +E+ +G+L +L + E + P S+
Sbjct: 87 NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETD------------PAFAIANSTAS 134
Query: 527 KTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL---RNIGVK 583
+ A VARG+ YL H +L +IL+ E+ KIA FGL + + VK
Sbjct: 135 TLSSQQLLHFAADVARGMDYLSQKQFIHRNLAARNILVGENYVAKIADFGLSRGQEVYVK 194
Query: 584 NVGERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAG 633
R E SDV+ +GV+L E+++ GT C +L ++
Sbjct: 195 KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLG-GTPYCGMTCAELYEKLPQ 253
Query: 634 GDALDFRLK--LGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
G +RL+ L D V +++ C + P +RP+ Q+L
Sbjct: 254 G----YRLEKPLNCDDEVYDLMRQ------CWREKPYERPSFAQIL 289
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 120/270 (44%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L +A D D ++ + + + KH N++ L G C V++E+ + G+L
Sbjct: 63 VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 122
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L EP ++S + H+P +SS + + A VARG+ YL
Sbjct: 123 EYLQ---AREPPGLEYSYNP-SHNPE--EQLSSKDLVS------CAYQVARGMEYLASKK 170
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E KIA FGL R+I + +++ N + PE
Sbjct: 171 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYT 230
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV+L E+ T G V+ + KL+KEG D + E+
Sbjct: 231 HQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDK--------PSNCTNELY 282
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 283 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 309
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 119/286 (41%), Gaps = 43/286 (15%)
Query: 412 ESLLAEGRCGPVYRAVLPGE---LHVAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLL 466
+ ++ EG G V +A + + + AIK + + A DH D + L +L HPN++
Sbjct: 20 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 79
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPE 526
L G C + +E+ +G+L +L + E + P S+
Sbjct: 80 NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETD------------PAFAIANSTAS 127
Query: 527 KTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL---RNIGVK 583
+ A VARG+ YL H L +IL+ E+ KIA FGL + + VK
Sbjct: 128 TLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK 187
Query: 584 NVGERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAG 633
R E SDV+ +GV+L E+++ GT C +L ++
Sbjct: 188 KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLG-GTPYCGMTCAELYEKLPQ 246
Query: 634 GDALDFRLK--LGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
G +RL+ L D V +++ C + P +RP+ Q+L
Sbjct: 247 G----YRLEKPLNCDDEVYDLMRQ------CWREKPYERPSFAQIL 282
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 119/286 (41%), Gaps = 43/286 (15%)
Query: 412 ESLLAEGRCGPVYRAVLPGE---LHVAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLL 466
+ ++ EG G V +A + + + AIK + + A DH D + L +L HPN++
Sbjct: 30 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 89
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPE 526
L G C + +E+ +G+L +L + E + P S+
Sbjct: 90 NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETD------------PAFAIANSTAS 137
Query: 527 KTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL---RNIGVK 583
+ A VARG+ YL H L +IL+ E+ KIA FGL + + VK
Sbjct: 138 TLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVK 197
Query: 584 NVGERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAG 633
R E SDV+ +GV+L E+++ GT C +L ++
Sbjct: 198 KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLG-GTPYCGMTCAELYEKLPQ 256
Query: 634 GDALDFRLK--LGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
G +RL+ L D V +++ C + P +RP+ Q+L
Sbjct: 257 G----YRLEKPLNCDDEVYDLMRQ------CWREKPYERPSFAQIL 292
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 124/297 (41%), Gaps = 51/297 (17%)
Query: 415 LAEGRCGPVYRAVLPG--------ELHVAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPN 464
L EG G V A G + VA+K+L D+A D D V+ + + + KH N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 465 LLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISS 524
++ L G C V++E+ + G+L +L P ++S D +
Sbjct: 103 IITLLGACTQDGPLYVIVEYASKGNLREYLR---ARRPPGMEYSYDI---------NRVP 150
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
E+ + +ARG+ YL H L ++L+ E+ KIA FGL R+I
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMELLT--GKRGTDDCVKWVRK 626
+ +++ N + PE SDV+ FGV++ E+ T G V+ + K
Sbjct: 211 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 270
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
L+KEG D + E+ +R C P +RPT +Q++ L I
Sbjct: 271 LLKEGHRMDK--------PANCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 124/297 (41%), Gaps = 51/297 (17%)
Query: 415 LAEGRCGPVYRAVLPG--------ELHVAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPN 464
L EG G V A G + VA+K+L D+A D D V+ + + + KH N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 465 LLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISS 524
++ L G C V++E+ + G+L +L P ++S D +
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLR---ARRPPGMEYSYDI---------NRVP 150
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
E+ + +ARG+ YL H L ++L+ E+ KIA FGL R+I
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMELLT--GKRGTDDCVKWVRK 626
+ +++ N + PE SDV+ FGV++ E+ T G V+ + K
Sbjct: 211 DXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 270
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
L+KEG D + E+ +R C P +RPT +Q++ L I
Sbjct: 271 LLKEGHRMDK--------PANCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L D+A D D V+ + + + KH N++ L G C V++E+ + G+L
Sbjct: 116 VAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 175
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L P ++S D + E+ + +ARG+ YL
Sbjct: 176 EYLR---ARRPPGMEYSYDI---------NRVPEEQMTFKDLVSCTYQLARGMEYLASQK 223
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E+ KIA FGL R+I + +++ N + PE
Sbjct: 224 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYT 283
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV++ E+ T G V+ + KL+KEG D + E+
Sbjct: 284 HQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDK--------PANCTNELY 335
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 336 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 362
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L D+A D D V+ + + + KH N++ L G C V++E+ + G+L
Sbjct: 57 VAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 116
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L P ++S D + E+ + +ARG+ YL
Sbjct: 117 EYLR---ARRPPGMEYSYDI---------NRVPEEQMTFKDLVSCTYQLARGMEYLASQK 164
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E+ KIA FGL R+I + +++ N + PE
Sbjct: 165 CIHRDLTARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYT 224
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV++ E+ T G V+ + KL+KEG D + E+
Sbjct: 225 HQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDK--------PANCTNELY 276
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 277 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 303
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 122/299 (40%), Gaps = 66/299 (22%)
Query: 415 LAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPN---L 465
L +G G VY V G E VAIK ++ A + + + +E S +K N +
Sbjct: 18 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVMKEFNCHHV 75
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E M GDL +L L P +E+ ++ P
Sbjct: 76 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL---RPEMEN------------NPVLAPP 120
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV 585
+ + ++A +A G+AYL+ H L + ++AE KI FG+ +++
Sbjct: 121 SLSKMI---QMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGM----TRDI 173
Query: 586 GERSENETCG----------PE----------SDVYCFGVILMELLTGKRGTDDCV--KW 623
E G PE SDV+ FGV+L E+ T + +
Sbjct: 174 XETDXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ 233
Query: 624 VRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKD 682
V + V EG L D+ +M+ L + +C +P RP+ +++ +K+
Sbjct: 234 VLRFVMEGG---------LLDKPDNCPDML--LELMRMCWQYNPKMRPSFLEIISSIKE 281
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 119/270 (44%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L +A D D ++ + + + KH N++ L G C V++E+ + G+L
Sbjct: 104 VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 163
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L P ++S + H+P +SS + + A VARG+ YL
Sbjct: 164 EYLQ---ARRPPGLEYSYNP-SHNPE--EQLSSKDLVS------CAYQVARGMEYLASKK 211
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E KIA FGL R+I + +++ N + PE
Sbjct: 212 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYT 271
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV+L E+ T G V+ + KL+KEG D + E+
Sbjct: 272 HQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDK--------PSNCTNELY 323
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 324 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 350
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L D+A D D V+ + + + KH N++ L G C V++E+ + G+L
Sbjct: 59 VAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 118
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L P ++S D + E+ + +ARG+ YL
Sbjct: 119 EYLR---ARRPPGMEYSYDI---------NRVPEEQMTFKDLVSCTYQLARGMEYLASQK 166
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E+ KIA FGL R+I + +++ N + PE
Sbjct: 167 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYT 226
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV++ E+ T G V+ + KL+KEG D + E+
Sbjct: 227 HQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDK--------PANCTNELY 278
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 279 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 305
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 119/270 (44%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L +A D D ++ + + + KH N++ L G C V++E+ + G+L
Sbjct: 56 VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 115
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L P ++S + H+P +SS + + A VARG+ YL
Sbjct: 116 EYLQ---ARRPPGLEYSYNP-SHNPE--EQLSSKDLVS------CAYQVARGMEYLASKK 163
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E KIA FGL R+I + +++ N + PE
Sbjct: 164 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYT 223
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV+L E+ T G V+ + KL+KEG D + E+
Sbjct: 224 HQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDK--------PSNCTNELY 275
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 276 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 302
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 119/270 (44%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L +A D D ++ + + + KH N++ L G C V++E+ + G+L
Sbjct: 52 VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 111
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L P ++S + H+P +SS + + A VARG+ YL
Sbjct: 112 EYLQ---ARRPPGLEYSYNP-SHNPE--EQLSSKDLVS------CAYQVARGMEYLASKK 159
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E KIA FGL R+I + +++ N + PE
Sbjct: 160 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYT 219
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV+L E+ T G V+ + KL+KEG D + E+
Sbjct: 220 HQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDK--------PSNCTNELY 271
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 272 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 298
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L D+A D D V+ + + + KH N++ L G C V++E+ + G+L
Sbjct: 62 VAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 121
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L P ++S D + E+ + +ARG+ YL
Sbjct: 122 EYLR---ARRPPGMEYSYDI---------NRVPEEQMTFKDLVSCTYQLARGMEYLASQK 169
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E+ KIA FGL R+I + +++ N + PE
Sbjct: 170 CIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYT 229
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV++ E+ T G V+ + KL+KEG D + E+
Sbjct: 230 HQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDK--------PANCTNELY 281
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 282 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 308
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 124/297 (41%), Gaps = 51/297 (17%)
Query: 415 LAEGRCGPVYRAVLPG--------ELHVAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPN 464
L EG G V A G + VA+K+L D+A D D V+ + + + KH N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 465 LLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISS 524
++ L G C V++E+ + G+L +L P ++S D +
Sbjct: 103 IIHLLGACTQDGPLYVIVEYASKGNLREYLR---ARRPPGMEYSYDI---------NRVP 150
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
E+ + +ARG+ YL H L ++L+ E+ KIA FGL R+I
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMELLT--GKRGTDDCVKWVRK 626
+ +++ N + PE SDV+ FGV++ E+ T G V+ + K
Sbjct: 211 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 270
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
L+KEG D + E+ +R C P +RPT +Q++ L I
Sbjct: 271 LLKEGHRMDK--------PANCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 124/297 (41%), Gaps = 51/297 (17%)
Query: 415 LAEGRCGPVYRAVLPG--------ELHVAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPN 464
L EG G V A G + VA+K+L D+A D D V+ + + + KH N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSDLVSEMEMMKMIGKHKN 102
Query: 465 LLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISS 524
++ L G C V++E+ + G+L +L P ++S D +
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLR---ARRPPGMEYSYDI---------NRVP 150
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
E+ + +ARG+ YL H L ++L+ E+ KIA FGL R+I
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMELLT--GKRGTDDCVKWVRK 626
+ +++ N + PE SDV+ FGV++ E+ T G V+ + K
Sbjct: 211 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 270
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
L+KEG D + E+ +R C P +RPT +Q++ L I
Sbjct: 271 LLKEGHRMDK--------PANCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 119/270 (44%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L +A D D ++ + + + KH N++ L G C V++E+ + G+L
Sbjct: 63 VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 122
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L P ++S + H+P +SS + + A VARG+ YL
Sbjct: 123 EYLQ---ARRPPGLEYSYNP-SHNPE--EQLSSKDLVS------CAYQVARGMEYLASKK 170
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E KIA FGL R+I + +++ N + PE
Sbjct: 171 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYT 230
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV+L E+ T G V+ + KL+KEG D + E+
Sbjct: 231 HQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDK--------PSNCTNELY 282
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 283 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 309
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 119/270 (44%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L +A D D ++ + + + KH N++ L G C V++E+ + G+L
Sbjct: 55 VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 114
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L P ++S + H+P +SS + + A VARG+ YL
Sbjct: 115 EYLQ---ARRPPGLEYSYNP-SHNPE--EQLSSKDLVS------CAYQVARGMEYLASKK 162
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E KIA FGL R+I + +++ N + PE
Sbjct: 163 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYT 222
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV+L E+ T G V+ + KL+KEG D + E+
Sbjct: 223 HQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDK--------PSNCTNELY 274
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 275 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 301
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 66/299 (22%)
Query: 415 LAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPN---L 465
L +G G VY V G E VAIK ++ A + + + +E S +K N +
Sbjct: 27 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVMKEFNCHHV 84
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E M GDL +L L P +E+ ++ P
Sbjct: 85 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL---RPEMEN------------NPVLAPP 129
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV 585
+ + ++A +A G+AYL+ H L + ++AE KI FG+ +++
Sbjct: 130 SLSKMI---QMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGM----TRDI 182
Query: 586 GERSENETCG----------PE----------SDVYCFGVILMELLTGKRGTDDCV--KW 623
E G PE SDV+ FGV+L E+ T + +
Sbjct: 183 XETDXXRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ 242
Query: 624 VRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKD 682
V + V EG D D D + E++ +C +P RP+ +++ +K+
Sbjct: 243 VLRFVMEGGLLDKPD-----NCPDMLFELMR------MCWQYNPKMRPSFLEIISSIKE 290
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 49/226 (21%)
Query: 415 LAEGRCGPVYRA----VLPGE--LHVAIKVL----DNAKGIDHDDAVAMFDELSRLKHPN 464
L EG G V+ A + P + + VA+K L DNA+ H +A + L+ L+H +
Sbjct: 21 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREA----ELLTNLQHEH 76
Query: 465 LLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGA--GSHI 522
++ G C+ G +++ E+M +GDL+++L H P A +
Sbjct: 77 IVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRA-----------------HGPDAVLMAEG 119
Query: 523 SSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGV 582
+ P + IA +A G+ YL H L T + L+ E+L KI FG+
Sbjct: 120 NPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVY 179
Query: 583 KNVGERSENETCGP----------------ESDVYCFGVILMELLT 612
R T P ESDV+ GV+L E+ T
Sbjct: 180 STDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFT 225
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 117/284 (41%), Gaps = 56/284 (19%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L G+ G V+ A VA+K + + + +A + + L+H L+ L +
Sbjct: 187 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKL--H 243
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ KE + ++ EFMA G L +L GS P+ ++
Sbjct: 244 AVVTKEPIYIITEFMAKGSLLDFLKS--------------------DEGSKQPLPKLIDF 283
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSE 590
+ +A G+A++ H L ++IL++ SL KIA FGL +G K + +
Sbjct: 284 SAQ------IAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVGAKFPIKWTA 337
Query: 591 NETCG-----PESDVYCFGVILMELLTGKR------GTDDCVKWVRKLVKEGAGGDALDF 639
E +SDV+ FG++LME++T R + ++ AL+
Sbjct: 338 PEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIR-------------ALER 384
Query: 640 RLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
++ ++ E E + C + P +RPT + + +L D
Sbjct: 385 GYRMPRPENCPE--ELYNIMMRCWKNRPEERPTFEYIQSVLDDF 426
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 132/325 (40%), Gaps = 73/325 (22%)
Query: 390 SKPLVNYLTFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPGELHVAIKV 438
+K ++ T++D A F KE ++ G G V R LPG+ VA+ +
Sbjct: 17 TKTYIDPETYEDPNRAVHQFAKELDASCIKIERVIGAGEFGEVCSGRLKLPGKRDVAVAI 76
Query: 439 LDNAKGIDHDDAVAMFDELS---RLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLH 495
G E S + HPN++ L G GK ++++EFM NG L +L
Sbjct: 77 KTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLR 136
Query: 496 ELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHG 555
+ H G + I V R G+A G+ YL +G H
Sbjct: 137 K------------------HDGQFTVI------QLVGMLR---GIAAGMRYLADMGYVHR 169
Query: 556 HLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENETCG--------PE---------- 597
L +IL+ +L K++ FGL + +++ E T G PE
Sbjct: 170 DLAARNILVNSNLVCKVSDFGLSRV-IEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSA 228
Query: 598 SDVYCFGVILMELLT-GKRGTDDCVKW-VRKLVKEGAGGDALDFRLKLGSGDSVAEMVES 655
SDV+ +G+++ E+++ G+R D V K ++EG +RL D A + +
Sbjct: 229 SDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEG-------YRLP-APMDCPAGLHQL 280
Query: 656 LRVGYLCTADSPGKRPTMQQVLGLL 680
+ C +RP +Q++G+L
Sbjct: 281 M---LDCWQKERAERPKFEQIVGIL 302
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 124/297 (41%), Gaps = 51/297 (17%)
Query: 415 LAEGRCGPVYRAVLPG--------ELHVAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPN 464
L EG G V A G + VA+K+L D+A D D V+ + + + KH N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 465 LLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISS 524
++ L G C V++E+ + G+L +L P ++S D +
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLR---ARRPPGMEYSYDI---------NRVP 150
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
E+ + +ARG+ YL H L ++L+ E+ +IA FGL R+I
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMRIADFGLARDINNI 210
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMELLT--GKRGTDDCVKWVRK 626
+ +++ N + PE SDV+ FGV++ E+ T G V+ + K
Sbjct: 211 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 270
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
L+KEG D + E+ +R C P +RPT +Q++ L I
Sbjct: 271 LLKEGHRMDK--------PANCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 126/301 (41%), Gaps = 61/301 (20%)
Query: 415 LAEGRCGPVY----RAVLPGELH--VAIKVLDNAKGIDHDDAVAMFDELSRLKH---PNL 465
L +G G VY R ++ GE VA+K ++ + + + + +E S +K ++
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR--ERIEFLNEASVMKGFTCHHV 82
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHEL-PTGEPNVEDWSTDTWDHHPGAGSHISS 524
+ L G G+ LV++E MA+GDL +L L P E N PG
Sbjct: 83 VRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENN------------PGR----PP 126
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
P + ++A +A G+AYL+ H +L + ++A KI FG+ R+I
Sbjct: 127 PTLQEMI---QMAAEIADGMAYLNAKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYET 183
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMEL--LTGKRGTDDCVKWVRK 626
+ + PE SD++ FGV+L E+ L + + V K
Sbjct: 184 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLK 243
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLK-DIRP 685
V +G L D+ E V L +C +P RPT +++ LLK D+ P
Sbjct: 244 FVMDGG---------YLDQPDNCPERVTDLM--RMCWQFNPNMRPTFLEIVNLLKDDLHP 292
Query: 686 S 686
S
Sbjct: 293 S 293
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 123/297 (41%), Gaps = 51/297 (17%)
Query: 415 LAEGRCGPVYRAVLPG--------ELHVAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPN 464
L EG G V A G + VA+K+L D+A D D V+ + + + KH N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 465 LLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISS 524
++ L G C V++E+ + G+L +L P ++S D +
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLR---ARRPPGMEYSYDI---------NRVP 150
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
E+ + +ARG+ YL H L ++L+ E+ KIA FGL R+I
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMELLT--GKRGTDDCVKWVRK 626
+ + + N + PE SDV+ FGV++ E+ T G V+ + K
Sbjct: 211 DYYKNTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 270
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
L+KEG D + E+ +R C P +RPT +Q++ L I
Sbjct: 271 LLKEGHRMDK--------PANCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 118/270 (43%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L +A D D ++ + + + KH N++ L G C V++E+ + G+L
Sbjct: 48 VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 107
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L P +E + H+P +SS + + A VARG+ YL
Sbjct: 108 EYLQA--RRPPGLEYCYNPS--HNPE--EQLSSKDLVS------CAYQVARGMEYLASKK 155
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E KIA FGL R+I + +++ N + PE
Sbjct: 156 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYT 215
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV+L E+ T G V+ + KL+KEG D + E+
Sbjct: 216 HQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDK--------PSNCTNELY 267
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 268 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 294
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 66/299 (22%)
Query: 415 LAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPN---L 465
L +G G VY V G E VAIK ++ A + + + +E S +K N +
Sbjct: 55 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVMKEFNCHHV 112
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E M GDL +L L P +E+ ++ P
Sbjct: 113 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL---RPEMEN------------NPVLAPP 157
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV 585
+ + ++A +A G+AYL+ H L + ++AE KI FG+ +++
Sbjct: 158 SLSKMI---QMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGM----TRDI 210
Query: 586 GERSENETCG----------PE----------SDVYCFGVILMELLTGKRGTDDCV--KW 623
E G PE SDV+ FGV+L E+ T + +
Sbjct: 211 YETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ 270
Query: 624 VRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKD 682
V + V EG D D D + E++ +C +P RP+ +++ +K+
Sbjct: 271 VLRFVMEGGLLDKPD-----NCPDMLFELMR------MCWQYNPKMRPSFLEIISSIKE 318
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 126/301 (41%), Gaps = 61/301 (20%)
Query: 415 LAEGRCGPVY----RAVLPGELH--VAIKVLDNAKGIDHDDAVAMFDELSRLKH---PNL 465
L +G G VY R ++ GE VA+K ++ + + + + +E S +K ++
Sbjct: 26 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR--ERIEFLNEASVMKGFTCHHV 83
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHEL-PTGEPNVEDWSTDTWDHHPGAGSHISS 524
+ L G G+ LV++E MA+GDL +L L P E N PG
Sbjct: 84 VRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENN------------PGR----PP 127
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
P + ++A +A G+AYL+ H +L + ++A KI FG+ R+I
Sbjct: 128 PTLQEMI---QMAAEIADGMAYLNAKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYET 184
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMEL--LTGKRGTDDCVKWVRK 626
+ + PE SD++ FGV+L E+ L + + V K
Sbjct: 185 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLK 244
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLK-DIRP 685
V +G L D+ E V L +C +P RPT +++ LLK D+ P
Sbjct: 245 FVMDGG---------YLDQPDNCPERVTDLM--RMCWQFNPNMRPTFLEIVNLLKDDLHP 293
Query: 686 S 686
S
Sbjct: 294 S 294
>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20
pdb|2HXL|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1
pdb|2HXQ|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2
pdb|2HY0|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 22
pdb|3F9N|A Chain A, Crystal Structure Of Chk1 Kinase In Complex With Inhibitor
38
Length = 322
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 14 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 73
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 74 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 109
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 110 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 166 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 217
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 125/301 (41%), Gaps = 61/301 (20%)
Query: 415 LAEGRCGPVY----RAVLPGELH--VAIKVLDNAKGIDHDDAVAMFDELSRLKH---PNL 465
L +G G VY R ++ GE VA+K ++ + + + + +E S +K ++
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR--ERIEFLNEASVMKGFTCHHV 82
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHEL-PTGEPNVEDWSTDTWDHHPGAGSHISS 524
+ L G G+ LV++E MA+GDL +L L P E N PG
Sbjct: 83 VRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENN------------PGR----PP 126
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
P + ++A +A G+AYL+ H L + ++A KI FG+ R+I
Sbjct: 127 PTLQEMI---QMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXET 183
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMEL--LTGKRGTDDCVKWVRK 626
+ + PE SD++ FGV+L E+ L + + V K
Sbjct: 184 DXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLK 243
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLK-DIRP 685
V +G L D+ E V L +C +P RPT +++ LLK D+ P
Sbjct: 244 FVMDGG---------YLDQPDNCPERVTDLM--RMCWQFNPNMRPTFLEIVNLLKDDLHP 292
Query: 686 S 686
S
Sbjct: 293 S 293
>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 14 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEIXINKMLNHENVVKFYGHR 73
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 74 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 109
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 110 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 166 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 217
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 117/286 (40%), Gaps = 54/286 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V G+ VA+K++ + D+ + +L HP L+ G C
Sbjct: 16 LGSGQFGVVKLGKWKGQYDVAVKMIKEG-SMSEDEFFQEAQTMMKLSHPKLVKFYGVCSK 74
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
++ E+++NG L +L SH E + +
Sbjct: 75 EYPIYIVTEYISNGCLLNYLR------------------------SHGKGLEPSQLL--- 107
Query: 535 RIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG-----LRNIGVKNVGERS 589
+ V G+A+L H L + L+ L K++ FG L + V +VG +
Sbjct: 108 EMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKF 167
Query: 590 ENETCGPE----------SDVYCFGVILMELLT-GKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG+++ E+ + GK D ++V + + G L
Sbjct: 168 PVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN--SEVVLKVSQGHRL- 224
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIR 684
+R L S D++ +++ Y C + P KRPT QQ+L ++ +R
Sbjct: 225 YRPHLAS-DTIYQIM------YSCWHELPEKRPTFQQLLSSIEPLR 263
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 119/270 (44%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L +A D D ++ + + + KH N++ L G C V++E+ + G+L
Sbjct: 63 VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 122
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L P ++S + H+P +SS + + A VARG+ YL
Sbjct: 123 EYLQ---ARRPPGLEFSFNP-SHNPE--EQLSSKDLVS------CAYQVARGMEYLASKK 170
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E KIA FGL R+I + +++ N + PE
Sbjct: 171 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKTTNGRLPVKWMAPEALFDRIYT 230
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV+L E+ T G V+ + KL+KEG D + E+
Sbjct: 231 HQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDK--------PSNCTNELY 282
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 283 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 309
>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54
pdb|2QHM|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 2a
pdb|2QHN|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 1a
pdb|3TKH|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S01
pdb|3TKI|A Chain A, Crystal Structure Of Chk1 In Complex With Inhibitor S25
Length = 323
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 15 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 75 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 110
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 111 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 166
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 218
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 125/301 (41%), Gaps = 61/301 (20%)
Query: 415 LAEGRCGPVY----RAVLPGELH--VAIKVLDNAKGIDHDDAVAMFDELSRLKH---PNL 465
L +G G VY R ++ GE VA+K ++ + + + + +E S +K ++
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR--ERIEFLNEASVMKGFTCHHV 82
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHEL-PTGEPNVEDWSTDTWDHHPGAGSHISS 524
+ L G G+ LV++E MA+GDL +L L P E N PG
Sbjct: 83 VRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENN------------PGR----PP 126
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
P + ++A +A G+AYL+ H L + ++A KI FG+ R+I
Sbjct: 127 PTLQEMI---QMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXET 183
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMEL--LTGKRGTDDCVKWVRK 626
+ + PE SD++ FGV+L E+ L + + V K
Sbjct: 184 DXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLK 243
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLK-DIRP 685
V +G L D+ E V L +C +P RPT +++ LLK D+ P
Sbjct: 244 FVMDGG---------YLDQPDNCPERVTDLM--RMCWQFNPKMRPTFLEIVNLLKDDLHP 292
Query: 686 S 686
S
Sbjct: 293 S 293
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 66/299 (22%)
Query: 415 LAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPN---L 465
L +G G VY V G E VAIK ++ A + + + +E S +K N +
Sbjct: 24 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVMKEFNCHHV 81
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E M GDL +L L P +E+ ++ P
Sbjct: 82 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL---RPEMEN------------NPVLAPP 126
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV 585
+ + ++A +A G+AYL+ H L + ++AE KI FG+ +++
Sbjct: 127 SLSKMI---QMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGM----TRDI 179
Query: 586 GERSENETCG----------PE----------SDVYCFGVILMELLTGKRGTDDCV--KW 623
E G PE SDV+ FGV+L E+ T + +
Sbjct: 180 YETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ 239
Query: 624 VRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKD 682
V + V EG D D D + E++ +C +P RP+ +++ +K+
Sbjct: 240 VLRFVMEGGLLDKPD-----NCPDMLFELMR------MCWQYNPKMRPSFLEIISSIKE 287
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 125/301 (41%), Gaps = 61/301 (20%)
Query: 415 LAEGRCGPVY----RAVLPGELH--VAIKVLDNAKGIDHDDAVAMFDELSRLKH---PNL 465
L +G G VY R ++ GE VA+K ++ + + + + +E S +K ++
Sbjct: 22 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR--ERIEFLNEASVMKGFTCHHV 79
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHEL-PTGEPNVEDWSTDTWDHHPGAGSHISS 524
+ L G G+ LV++E MA+GDL +L L P E N PG
Sbjct: 80 VRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENN------------PGR----PP 123
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
P + ++A +A G+AYL+ H L + ++A KI FG+ R+I
Sbjct: 124 PTLQEMI---QMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXET 180
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMEL--LTGKRGTDDCVKWVRK 626
+ + PE SD++ FGV+L E+ L + + V K
Sbjct: 181 DXXRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLK 240
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLK-DIRP 685
V +G L D+ E V L +C +P RPT +++ LLK D+ P
Sbjct: 241 FVMDGG---------YLDQPDNCPERVTDLM--RMCWQFNPKMRPTFLEIVNLLKDDLHP 289
Query: 686 S 686
S
Sbjct: 290 S 290
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 118/270 (43%), Gaps = 43/270 (15%)
Query: 434 VAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLH 491
VA+K+L +A D D ++ + + + KH N++ L G C V++E+ + G+L
Sbjct: 63 VAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLR 122
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L P +E + H+P +SS + + A VARG+ YL
Sbjct: 123 EYLQA--RRPPGLEYCYNPS--HNPE--EQLSSKDLVS------CAYQVARGMEYLASKK 170
Query: 552 STHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSEN-----ETCGPE-------- 597
H L ++L+ E KIA FGL R+I + +++ N + PE
Sbjct: 171 CIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYT 230
Query: 598 --SDVYCFGVILMELLT--GKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMV 653
SDV+ FGV+L E+ T G V+ + KL+KEG D + E+
Sbjct: 231 HQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDK--------PSNCTNELY 282
Query: 654 ESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R C P +RPT +Q++ L I
Sbjct: 283 MMMRD---CWHAVPSQRPTFKQLVEDLDRI 309
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 121/295 (41%), Gaps = 58/295 (19%)
Query: 415 LAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPN---L 465
L +G G VY V G E VAIK ++ A + + + +E S +K N +
Sbjct: 33 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVMKEFNCHHV 90
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E M GDL +L L P +E+ ++ P
Sbjct: 91 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL---RPEMEN------------NPVLAPP 135
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKN 584
+ + ++A +A G+AYL+ H L + ++AE KI FG+ R+I +
Sbjct: 136 SLSKMI---QMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD 192
Query: 585 VGERSEN-----ETCGPE----------SDVYCFGVILMELLTGKRGTDDCV--KWVRKL 627
+ PE SDV+ FGV+L E+ T + + V +
Sbjct: 193 YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRF 252
Query: 628 VKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKD 682
V EG D D D + E++ +C +P RP+ +++ +K+
Sbjct: 253 VMEGGLLDKPD-----NCPDMLFELMR------MCWQYNPKMRPSFLEIISSIKE 296
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 66/299 (22%)
Query: 415 LAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPN---L 465
L +G G VY V G E VAIK ++ A + + + +E S +K N +
Sbjct: 26 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVMKEFNCHHV 83
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E M GDL +L L P +E+ ++ P
Sbjct: 84 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL---RPEMEN------------NPVLAPP 128
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV 585
+ + ++A +A G+AYL+ H L + ++AE KI FG+ +++
Sbjct: 129 SLSKMI---QMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGM----TRDI 181
Query: 586 GERSENETCG----------PE----------SDVYCFGVILMELLTGKRGTDDCV--KW 623
E G PE SDV+ FGV+L E+ T + +
Sbjct: 182 YETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ 241
Query: 624 VRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKD 682
V + V EG D D D + E++ +C +P RP+ +++ +K+
Sbjct: 242 VLRFVMEGGLLDKPD-----NCPDMLFELMR------MCWQYNPKMRPSFLEIISSIKE 289
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 123/297 (41%), Gaps = 51/297 (17%)
Query: 415 LAEGRCGPVYRAVLPG--------ELHVAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPN 464
L EG G V A G + VA+K+L D+A D D V+ + + + KH N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 465 LLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISS 524
++ L G C V++E+ + G+L +L P + S D +
Sbjct: 103 IINLLGACTQDGPLYVIVEYASKGNLREYLR---ARRPPGMEXSYDI---------NRVP 150
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
E+ + +ARG+ YL H L ++L+ E+ KIA FGL R+I
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMELLT--GKRGTDDCVKWVRK 626
+ +++ N + PE SDV+ FGV++ E+ T G V+ + K
Sbjct: 211 DXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 270
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
L+KEG D + E+ +R C P +RPT +Q++ L I
Sbjct: 271 LLKEGHRMDK--------PANCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 66/299 (22%)
Query: 415 LAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPN---L 465
L +G G VY V G E VAIK ++ A + + + +E S +K N +
Sbjct: 27 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVMKEFNCHHV 84
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E M GDL +L L P +E+ ++ P
Sbjct: 85 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL---RPEMEN------------NPVLAPP 129
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV 585
+ + ++A +A G+AYL+ H L + ++AE KI FG+ +++
Sbjct: 130 SLSKMI---QMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGM----TRDI 182
Query: 586 GERSENETCG----------PE----------SDVYCFGVILMELLTGKRGTDDCV--KW 623
E G PE SDV+ FGV+L E+ T + +
Sbjct: 183 YETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ 242
Query: 624 VRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKD 682
V + V EG D D D + E++ +C +P RP+ +++ +K+
Sbjct: 243 VLRFVMEGGLLDKPD-----NCPDMLFELMR------MCWQYNPKMRPSFLEIISSIKE 290
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 66/299 (22%)
Query: 415 LAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPN---L 465
L +G G VY V G E VAIK ++ A + + + +E S +K N +
Sbjct: 26 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVMKEFNCHHV 83
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E M GDL +L L P +E+ ++ P
Sbjct: 84 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL---RPEMEN------------NPVLAPP 128
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV 585
+ + ++A +A G+AYL+ H L + ++AE KI FG+ +++
Sbjct: 129 SLSKMI---QMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGM----TRDI 181
Query: 586 GERSENETCG----------PE----------SDVYCFGVILMELLTGKRGTDDCV--KW 623
E G PE SDV+ FGV+L E+ T + +
Sbjct: 182 YETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ 241
Query: 624 VRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKD 682
V + V EG D D D + E++ +C +P RP+ +++ +K+
Sbjct: 242 VLRFVMEGGLLDKPD-----NCPDMLFELMR------MCWQYNPKMRPSFLEIISSIKE 289
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 122/301 (40%), Gaps = 61/301 (20%)
Query: 415 LAEGRCGPVY----RAVLPGELH--VAIKVLDNAKGIDHDDAVAMFDELSRLKH---PNL 465
L +G G VY R ++ GE VA+K ++ + + + + +E S +K ++
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR--ERIEFLNEASVMKGFTCHHV 82
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHEL-PTGEPNVEDWSTDTWDHHPGAGSHISS 524
+ L G G+ LV++E MA+GDL +L L P E N PG
Sbjct: 83 VRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENN------------PGR----PP 126
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN 584
P + ++A +A G+AYL+ H L + ++A KI FG+ +
Sbjct: 127 PTLQEMI---QMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET 183
Query: 585 VGERSENETCGP----------------ESDVYCFGVILMEL--LTGKRGTDDCVKWVRK 626
R + P SD++ FGV+L E+ L + + V K
Sbjct: 184 AYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLK 243
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLK-DIRP 685
V +G L D+ E V L +C +P RPT +++ LLK D+ P
Sbjct: 244 FVMDGG---------YLDQPDNCPERVTDLM--RMCWQFNPKMRPTFLEIVNLLKDDLHP 292
Query: 686 S 686
S
Sbjct: 293 S 293
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 66/299 (22%)
Query: 415 LAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPN---L 465
L +G G VY V G E VAIK ++ A + + + +E S +K N +
Sbjct: 20 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVMKEFNCHHV 77
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E M GDL +L L P +E+ ++ P
Sbjct: 78 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL---RPEMEN------------NPVLAPP 122
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV 585
+ + ++A +A G+AYL+ H L + ++AE KI FG+ +++
Sbjct: 123 SLSKMI---QMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGM----TRDI 175
Query: 586 GERSENETCG----------PE----------SDVYCFGVILMELLTGKRGTDDCV--KW 623
E G PE SDV+ FGV+L E+ T + +
Sbjct: 176 YETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ 235
Query: 624 VRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKD 682
V + V EG D D D + E++ +C +P RP+ +++ +K+
Sbjct: 236 VLRFVMEGGLLDKPD-----NCPDMLFELMR------MCWQYNPKMRPSFLEIISSIKE 283
>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 14 LGEGAAGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 73
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 74 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 109
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 110 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 166 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 217
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 125/301 (41%), Gaps = 61/301 (20%)
Query: 415 LAEGRCGPVY----RAVLPGELH--VAIKVLDNAKGIDHDDAVAMFDELSRLKH---PNL 465
L +G G VY R ++ GE VA+K ++ + + + + +E S +K ++
Sbjct: 25 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR--ERIEFLNEASVMKGFTCHHV 82
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHEL-PTGEPNVEDWSTDTWDHHPGAGSHISS 524
+ L G G+ LV++E MA+GDL +L L P E N PG
Sbjct: 83 VRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENN------------PGR----PP 126
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
P + ++A +A G+AYL+ H L + ++A KI FG+ R+I
Sbjct: 127 PTLQEMI---QMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET 183
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMEL--LTGKRGTDDCVKWVRK 626
+ + PE SD++ FGV+L E+ L + + V K
Sbjct: 184 DYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLK 243
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLK-DIRP 685
V +G L D+ E V L +C +P RPT +++ LLK D+ P
Sbjct: 244 FVMDGG---------YLDQPDNCPERVTDLM--RMCWQFNPKMRPTFLEIVNLLKDDLHP 292
Query: 686 S 686
S
Sbjct: 293 S 293
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 31/223 (13%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVL-DNAKGIDHDDAVAMFDELSRLKHPNLLP 467
L EG G V +A G VA+K+L +NA + D ++ F+ L ++ HP+++
Sbjct: 31 LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90
Query: 468 LAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEK 527
L G C L+++E+ G L +L E P S + P++
Sbjct: 91 LYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSR------NSSSLDHPDE 144
Query: 528 TNWVTRHRIAIG--VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKN 584
I+ +++G+ YL + H L +IL+AE + KI+ FGL R++ ++
Sbjct: 145 RALTMGDLISFAWQISQGMQYLAEMSLVHRDLAARNILVAEGRKMKISDFGLSRDVYEED 204
Query: 585 VG-ERSE--------------NETCGPESDVYCFGVILMELLT 612
+RS+ + +SDV+ FGV+L E++T
Sbjct: 205 SXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 247
>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRB|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRG|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRH|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRM|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRN|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2BRO|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights
Into Hydrogen Bonding And Protein-Ligand Affinity
pdb|2C3J|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3K|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2C3L|A Chain A, Identification Of A Buried Pocket For Potent And Selective
Inhibition Of Chk1: Prediction And Verification
pdb|2CGU|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGV|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGW|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|2CGX|A Chain A, Identification Of Chemically Diverse Chk1 Inhibitors By
Receptor-Based Virtual Screening
pdb|3NLB|A Chain A, Novel Kinase Profile Highlights The Temporal Basis Of
Context Dependent Checkpoint Pathways To Cell Death
Length = 297
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 15 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 75 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 110
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 111 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 166
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 218
>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint
Kinase Chk1
pdb|1NVQ|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1UCN-01
pdb|1NVR|A Chain A, The Complex Structure Of Checkpoint Kinase
Chk1STAUROSPORINE
pdb|1NVS|A Chain A, The Complex Structure Of Checkpoint Kinase Chk1SB218078
pdb|2WMQ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMR|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMS|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMT|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMU|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMV|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMX|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2WMW|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEY|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XF0|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2XEZ|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2X8D|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2X8I|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YM3|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM4|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM5|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM6|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM7|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YM8|A Chain A, Crystal Structure Of Checkpoint Kinase 1 (Chk1) In Complex
With Inhibitors
pdb|2YDI|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 289
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 15 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 75 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 110
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 111 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 166
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 218
>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine
Analog
pdb|2GDO|A Chain A, 4-(aminoalkylamino)-3-benzimidazole-quinolinones As Potent
Chk1 Inhibitors
Length = 295
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 15 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 75 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 110
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 111 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 166
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 218
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 31/223 (13%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVL-DNAKGIDHDDAVAMFDELSRLKHPNLLP 467
L EG G V +A G VA+K+L +NA + D ++ F+ L ++ HP+++
Sbjct: 31 LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90
Query: 468 LAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEK 527
L G C L+++E+ G L +L E P S + P++
Sbjct: 91 LYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSR------NSSSLDHPDE 144
Query: 528 TNWVTRHRIAIG--VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKN 584
I+ +++G+ YL + H L +IL+AE + KI+ FGL R++ ++
Sbjct: 145 RALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEED 204
Query: 585 VG-ERSE--------------NETCGPESDVYCFGVILMELLT 612
+RS+ + +SDV+ FGV+L E++T
Sbjct: 205 SXVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 247
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 31/223 (13%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVL-DNAKGIDHDDAVAMFDELSRLKHPNLLP 467
L EG G V +A G VA+K+L +NA + D ++ F+ L ++ HP+++
Sbjct: 31 LGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIK 90
Query: 468 LAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEK 527
L G C L+++E+ G L +L E P S + P++
Sbjct: 91 LYGACSQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSR------NSSSLDHPDE 144
Query: 528 TNWVTRHRIAIG--VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKN 584
I+ +++G+ YL + H L +IL+AE + KI+ FGL R++ ++
Sbjct: 145 RALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEED 204
Query: 585 -VGERSE--------------NETCGPESDVYCFGVILMELLT 612
+RS+ + +SDV+ FGV+L E++T
Sbjct: 205 SYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVT 247
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 66/299 (22%)
Query: 415 LAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPN---L 465
L +G G VY V G E VAIK ++ A + + + +E S +K N +
Sbjct: 20 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVMKEFNCHHV 77
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E M GDL +L L P +E+ ++ P
Sbjct: 78 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL---RPEMEN------------NPVLAPP 122
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV 585
+ + ++A +A G+AYL+ H L + +AE KI FG+ +++
Sbjct: 123 SLSKMI---QMAGEIADGMAYLNANKFVHRDLAARNCXVAEDFTVKIGDFGM----TRDI 175
Query: 586 GERSENETCG----------PE----------SDVYCFGVILMELLTGKRGTDDCV--KW 623
E G PE SDV+ FGV+L E+ T + +
Sbjct: 176 YETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ 235
Query: 624 VRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKD 682
V + V EG L D+ +M+ L + +C +P RP+ +++ +K+
Sbjct: 236 VLRFVMEGG---------LLDKPDNCPDML--LELMRMCWQYNPKMRPSFLEIISSIKE 283
>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1
pdb|4FSQ|A Chain A, Crystal Structure Of The Chk1
pdb|4FSR|A Chain A, Crystal Structure Of The Chk1
pdb|4FT0|A Chain A, Crystal Structure Of The Chk1
pdb|4FT5|A Chain A, Crystal Structure Of The Chk1
pdb|4FT7|A Chain A, Crystal Structure Of The Chk1
pdb|4FT9|A Chain A, Crystal Structure Of The Chk1
pdb|4FTI|A Chain A, Crystal Structure Of The Chk1
pdb|4FTJ|A Chain A, Crystal Structure Of The Chk1
pdb|4FTK|A Chain A, Crystal Structure Of The Chk1
pdb|4FTL|A Chain A, Crystal Structure Of The Chk1
pdb|4FTM|A Chain A, Crystal Structure Of The Chk1
pdb|4FTO|A Chain A, Crystal Structure Of The Chk1
pdb|4FTR|A Chain A, Crystal Structure Of The Chk1
pdb|4FTT|A Chain A, Crystal Structure Of The Chk1
pdb|4FTU|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 14 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 73
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 74 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 109
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 110 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 166 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 217
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 123/297 (41%), Gaps = 51/297 (17%)
Query: 415 LAEGRCGPVYRAVLPG--------ELHVAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPN 464
L EG G V A G + VA+K+L D+A D D V+ + + + KH N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 465 LLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISS 524
++ L G C V++ + + G+L +L P ++S D +
Sbjct: 103 IINLLGACTQDGPLYVIVAYASKGNLREYLR---ARRPPGMEYSYDI---------NRVP 150
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
E+ + +ARG+ YL H L ++L+ E+ KIA FGL R+I
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMELLT--GKRGTDDCVKWVRK 626
+ +++ N + PE SDV+ FGV++ E+ T G V+ + K
Sbjct: 211 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 270
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
L+KEG D + E+ +R C P +RPT +Q++ L I
Sbjct: 271 LLKEGHRMDK--------PANCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1
Length = 278
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 13 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 72
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 73 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 108
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 109 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 164
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 165 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 216
>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint
Kinase Inhibitors - Hit To Lead Exploration
pdb|2YER|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YEX|A Chain A, Synthesis And Evaluation Of Triazolones As Checkpoint
Kinase 1 Inhibitors
pdb|2YDK|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 15 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 75 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 110
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 111 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 166
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 218
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 111/249 (44%), Gaps = 44/249 (17%)
Query: 392 PLVNY---LTFKDLIAATSHFGKESLLAEGRCGPVYRAVL----PGEL--HVAIKVL-DN 441
PL+N K++ + F +E L E R G VY+ L PGE VAIK L D
Sbjct: 10 PLINQHKQAKLKEISLSAVRFMEE--LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDK 67
Query: 442 AKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGE 501
A+G ++ +RL+HPN++ L G + ++ + ++GDLH + L
Sbjct: 68 AEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEF---LVMRS 124
Query: 502 PNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYL--HHVGSTHGHLVT 559
P+ + STD S + P+ + V + +A G+ YL HHV H L T
Sbjct: 125 PHSDVGSTDD---DRTVKSALEPPDFVHLVAQ------IAAGMEYLSSHHV--VHKDLAT 173
Query: 560 SSILLAESLEPKIAGFGL-RNIGVKNVGERSENETC-----GPE----------SDVYCF 603
++L+ + L KI+ GL R + + + N PE SD++ +
Sbjct: 174 RNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSY 233
Query: 604 GVILMELLT 612
GV+L E+ +
Sbjct: 234 GVVLWEVFS 242
>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human
Chk1 Kinase Domain
pdb|3OT8|A Chain A, X-Ray Crystal Structure Of Compound 17r Bound To Human
Chk1 Kinase Domain
pdb|3PA3|A Chain A, X-Ray Crystal Structure Of Compound 70 Bound To Human Chk1
Kinase Domain
pdb|3PA4|A Chain A, X-Ray Crystal Structure Of Compound 2a Bound To Human Chk1
Kinase Domain
pdb|3PA5|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
pdb|3U9N|A Chain A, X-Ray Crystal Structure Of Compound 1 Bound To Human Chk1
Kinase Domain
Length = 273
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 14 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 73
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 74 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 109
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 110 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 166 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 217
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 96/233 (41%), Gaps = 46/233 (19%)
Query: 409 FGKESLLAEGRCGPVYRA-VLPGELHVAIKVLDNAKGIDHDDAVAMFDELS---RLKHPN 464
F +LL +G VYRA + L VAIK++D + +E+ +LKHP+
Sbjct: 13 FKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPS 72
Query: 465 LLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISS 524
+L L Y ++LE NG+++R+L + V+ +S + H
Sbjct: 73 ILELYNYFEDSNYVYLVLEMCHNGEMNRYL------KNRVKPFSENEARHF--------- 117
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRN----- 579
H+I G+ YLH G H L S++LL ++ KIA FGL
Sbjct: 118 --------MHQIIT----GMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMP 165
Query: 580 -------IGVKNV--GERSENETCGPESDVYCFGVILMELLTGKRGTD-DCVK 622
G N E + G ESDV+ G + LL G+ D D VK
Sbjct: 166 HEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK 218
>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994
pdb|2YWP|A Chain A, Crystal Structure Of Chk1 With A Urea Inhibitor
pdb|2E9N|A Chain A, Structure Of H-chk1 Complexed With A767085
pdb|2E9O|A Chain A, Structure Of H-Chk1 Complexed With Aa582939
pdb|2E9P|A Chain A, Structure Of H-Chk1 Complexed With A771129
pdb|2E9U|A Chain A, Structure Of H-Chk1 Complexed With A780125
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 14 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 73
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 74 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 109
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 110 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 166 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 217
>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017
pdb|2E9V|B Chain B, Structure Of H-Chk1 Complexed With A859017
Length = 268
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 14 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 73
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 74 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 109
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 110 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 166 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 217
>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
pdb|3JVS|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding
Site
Length = 271
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 14 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 73
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 74 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 109
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 110 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 166 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 217
>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor
Length = 269
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 15 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 75 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 110
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 111 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 166
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 167 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 218
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 128/300 (42%), Gaps = 59/300 (19%)
Query: 415 LAEGRCGPVY----RAVLPGELH--VAIKVLDNAKGIDHDDAVAMFDELSRLKH---PNL 465
L +G G VY R ++ GE VA+K ++ + + + + +E S +K ++
Sbjct: 24 LGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLR--ERIEFLNEASVMKGFTCHHV 81
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E MA+GDL +L L P E+ +PG P
Sbjct: 82 VRLLGVVSKGQPTLVVMELMAHGDLKSYLRSL---RPEAEN--------NPGR----PPP 126
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI---- 580
+ ++A +A G+AYL+ H L + ++A KI FG+ R+I
Sbjct: 127 TLQEMI---QMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETD 183
Query: 581 ----GVKNV-------GERSENETCGPESDVYCFGVILMEL--LTGKRGTDDCVKWVRKL 627
G K + E ++ SD++ FGV+L E+ L + + V K
Sbjct: 184 YYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKF 243
Query: 628 VKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLK-DIRPS 686
V +G L D+ E V L +C +P RPT +++ LLK D+ PS
Sbjct: 244 VMDGG---------YLDQPDNCPERVTDLM--RMCWQFNPKMRPTFLEIVNLLKDDLHPS 292
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 189 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 245
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 246 AVVSEEPIYIVTEYMSKGSLLDFLK----GE----------------TGKYLRLPQLVD- 284
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 285 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 339
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 340 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 392
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 393 QVERGYRMPCPPECPESLHDLMCQ--CWRKEPEERPTFEYLQAFLEDYFTSTE 443
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 118/295 (40%), Gaps = 58/295 (19%)
Query: 415 LAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPN---L 465
L +G G VY V G E VAIK ++ A + + + +E S +K N +
Sbjct: 33 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVMKEFNCHHV 90
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E M GDL +L L N ++ P
Sbjct: 91 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMAN---------------NPVLAPP 135
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKN 584
+ + ++A +A G+AYL+ H L + ++AE KI FG+ R+I +
Sbjct: 136 SLSKMI---QMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD 192
Query: 585 VGERSEN-----ETCGPE----------SDVYCFGVILMELLTGKRGTDDCV--KWVRKL 627
+ PE SDV+ FGV+L E+ T + + V +
Sbjct: 193 YYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRF 252
Query: 628 VKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKD 682
V EG D D D + E++ +C +P RP+ +++ +K+
Sbjct: 253 VMEGGLLDKPD-----NCPDMLFELMR------MCWQYNPKMRPSFLEIISSIKE 296
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 272 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 328
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 329 AVVSEEPIYIVTEYMSKGSLLDFLK----GE----------------TGKYLRLPQLVD- 367
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 368 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 422
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 423 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 475
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 476 QVERGYRMPCPPECPESLHDLMC--QCWRKEPEERPTFEYLQAFLEDYFTSTE 526
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 189 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 245
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 246 AVVSEEPIYIVTEYMSKGSLLDFLK----GE----------------TGKYLRLPQLVD- 284
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 285 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 339
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 340 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 392
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 393 QVERGYRMPCPPECPESLHDLMCQ--CWRKEPEERPTFEYLQAFLEDYFTSTE 443
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 118/299 (39%), Gaps = 66/299 (22%)
Query: 415 LAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPN---L 465
L +G G VY V G E VAIK ++ A + + + +E S +K N +
Sbjct: 23 LGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMR--ERIEFLNEASVMKEFNCHHV 80
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G G+ LV++E M GDL +L L N ++ P
Sbjct: 81 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMAN---------------NPVLAPP 125
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV 585
+ + ++A +A G+AYL+ H L + ++AE KI FG+ +++
Sbjct: 126 SLSKMI---QMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGM----TRDI 178
Query: 586 GERSENETCG----------PE----------SDVYCFGVILMELLTGKRGTDDCV--KW 623
E G PE SDV+ FGV+L E+ T + +
Sbjct: 179 YETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQ 238
Query: 624 VRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKD 682
V + V EG D D D + E++ +C +P RP+ +++ +K+
Sbjct: 239 VLRFVMEGGLLDKPD-----NCPDMLFELMR------MCWQYNPKMRPSFLEIISSIKE 286
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 189 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 245
Query: 472 CIAGKEKLVLL-EFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 246 AVVSEEPIYIVGEYMSKGSLLDFLK----GE----------------TGKYLRLPQLVD- 284
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 285 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 339
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 340 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 392
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 393 QVERGYRMPCPPECPESLHDLMCQ--CWRKEPEERPTFEYLQAFLEDYFTSTE 443
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 123/297 (41%), Gaps = 51/297 (17%)
Query: 415 LAEGRCGPVYRAVLPG--------ELHVAIKVL-DNAKGIDHDDAVAMFDELSRL-KHPN 464
L EG G V A G + VA+K+L D+A D D V+ + + + KH N
Sbjct: 43 LGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN 102
Query: 465 LLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISS 524
++ L G C V++ + + G+L +L P ++S D +
Sbjct: 103 IINLLGACTQDGPLYVIVGYASKGNLREYLR---ARRPPGMEYSYDI---------NRVP 150
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
E+ + +ARG+ YL H L ++L+ E+ KIA FGL R+I
Sbjct: 151 EEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI 210
Query: 584 NVGERSEN-----ETCGPE----------SDVYCFGVILMELLT--GKRGTDDCVKWVRK 626
+ +++ N + PE SDV+ FGV++ E+ T G V+ + K
Sbjct: 211 DYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 270
Query: 627 LVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
L+KEG D + E+ +R C P +RPT +Q++ L I
Sbjct: 271 LLKEGHRMDK--------PANCTNELYMMMRD---CWHAVPSQRPTFKQLVEDLDRI 316
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+++EFM G+L +L E E N V
Sbjct: 85 REPPFYIIIEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 118
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 119 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 178
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 179 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 232
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 233 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 267
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 80
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+++EFM G+L +L E E N V
Sbjct: 81 REPPFYIIIEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 114
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 115 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAK 174
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 175 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 228
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 229 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 263
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 41/239 (17%)
Query: 399 FKDLIAATSHFGKESLLAEGRCGPVYRAVL----PGEL--HVAIKVL-DNAKGIDHDDAV 451
K++ + F +E L E R G VY+ L PGE VAIK L D A+G ++
Sbjct: 3 LKEISLSAVRFMEE--LGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFR 60
Query: 452 AMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDT 511
+RL+HPN++ L G + ++ + ++GDLH + L P+ + STD
Sbjct: 61 HEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEF---LVMRSPHSDVGSTDD 117
Query: 512 WDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYL--HHVGSTHGHLVTSSILLAESLE 569
S + P+ + V + +A G+ YL HHV H L T ++L+ + L
Sbjct: 118 ---DRTVKSALEPPDFVHLVAQ------IAAGMEYLSSHHV--VHKDLATRNVLVYDKLN 166
Query: 570 PKIAGFGL-RNIGVKNVGERSENETC-----GPE----------SDVYCFGVILMELLT 612
KI+ GL R + + + N PE SD++ +GV+L E+ +
Sbjct: 167 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFS 225
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 190 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGN-MSPEAFLQEAQVMKKLRHEKLVQL--Y 246
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 247 AVVSEEPIYIVTEYMSKGSLLDFLK----GE----------------MGKYLRLPQLVD- 285
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 286 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLGRLIEDNEYTARQ 340
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 341 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 393
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 394 QVERGYRMPCPPECPESLHDLMCQ--CWRKDPEERPTFEYLQAFLEDYFTSTE 444
>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A
Pyrrolo-Pyridine Inhibitor
Length = 273
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 55/234 (23%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDEL---SRLKHPNLLPLAG 470
L EG G V AV E VA+K++D + +D + + E+ + L H N++ G
Sbjct: 15 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIK--KEICINAMLNHENVVKFYG 72
Query: 471 YCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ G + + LE+ + G+L + EP+ I PE
Sbjct: 73 HRREGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQ 108
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSE 590
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER
Sbjct: 109 RFFHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLL 164
Query: 591 NETCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
N+ CG PE DV+ G++L +L G+ + +D C ++
Sbjct: 165 NKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 218
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 120/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 23 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 79
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + +++E+M+ G L +L GE G ++ P+ +
Sbjct: 80 AVVSEEPIYIVIEYMSKGSLLDFLK----GE----------------MGKYLRLPQLVD- 118
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 119 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQ 173
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 226
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 227 QVERGYRMPCPPECPESLHDLMCQ--CWRKDPEERPTFEYLQAFLEDYFTSTE 277
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 120/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 23 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 79
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + +++E+M+ G L +L GE G ++ P+ +
Sbjct: 80 AVVSEEPIYIVIEYMSKGSLLDFLK----GE----------------MGKYLRLPQLVD- 118
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 119 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 226
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 227 QVERGYRMPCPPECPESLHDLMCQ--CWRKDPEERPTFEYLQAFLEDYFTSTE 277
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 86/222 (38%), Gaps = 53/222 (23%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE---LSRLKHPNLLPLAGY 471
+ G G VY+ G+ VA+K+L N A +E L + +H N+L GY
Sbjct: 16 IGSGSFGTVYKGKWHGD--VAVKML-NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
A + +V ++ L+ LH + T K +
Sbjct: 73 STAPQLAIVT-QWCEGSSLYHHLHIIET---------------------------KFEMI 104
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
IA A+G+ YLH H L +++I L E L KI FGL + + G
Sbjct: 105 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 164
Query: 592 ETCG------PE-------------SDVYCFGVILMELLTGK 614
+ G PE SDVY FG++L EL+TG+
Sbjct: 165 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 206
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 23 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 79
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 80 AVVSEEPIYIVTEYMSKGSLLDFLK----GE----------------MGKYLRLPQLVD- 118
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 119 -----MAAQIASGMAYVERMNYVHRDLAAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 226
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 227 QVERGYRMPCPPECPESLHDLMCQ--CWRKDPEERPTFEYLQAFLEDYFTSTE 277
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 85 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 118
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 119 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAK 178
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 179 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 232
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 233 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 267
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 325
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 326 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 359
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H +L + L+ E+ K+A FGL + + G +
Sbjct: 360 LYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 419
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 420 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 473
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 474 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 508
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 85 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 118
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 119 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 178
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 179 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 232
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 233 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 267
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 112/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 225 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 283
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 284 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 317
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H +L + L+ E+ K+A FGL + + G +
Sbjct: 318 LYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 377
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 378 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 431
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 432 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 466
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 13 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 69
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 70 AVVSEEPIXIVTEYMSKGSLLDFLK----GE----------------TGKYLRLPQLVD- 108
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 109 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQ 163
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 164 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 216
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 217 QVERGYRMPCPPECPESLHDLMCQ--CWRKEPEERPTFEYLQAFLEDYFTSTE 267
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 25 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 83
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 84 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 117
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 118 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 177
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 178 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 231
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 232 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 266
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 32 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 86
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 87 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 136
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ YL H L + +L E K+A FGL
Sbjct: 137 FG------------------LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGL 178
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 179 ARDMYDKEXXSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 231
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 80 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 113
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 114 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 173
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 227
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 228 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 262
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 16 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 72
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 73 AVVSEEPIYIVTEYMSKGSLLDFLK----GE----------------TGKYLRLPQLVD- 111
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 112 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 166
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 167 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 219
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 220 QVERGYRMPCPPECPESLHDLMCQ--CWRKEPEERPTFEYLQAFLEDYFTSTE 270
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 80 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 113
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 114 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 173
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 227
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 228 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 262
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 34 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 92
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 93 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 126
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 127 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 186
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 187 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 240
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 241 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 275
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 125/330 (37%), Gaps = 76/330 (23%)
Query: 399 FKDLIAATSHFGKESLLAEGRCGPVYRAVLPGE----LHVAIKVLDNAKGIDHDDAVAMF 454
+D++ F +L +G G V A L E + VA+K+L A I D
Sbjct: 15 LEDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKML-KADIIASSDIEEFL 73
Query: 455 DELSRLK---HPNLLPLAGYCIAGKEK------LVLLEFMANGDLHRWLHELPTGEPNVE 505
E + +K HP++ L G + + K +V+L FM +GDLH +L GE
Sbjct: 74 REAACMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGE---- 129
Query: 506 DWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLA 565
+P T R + +A G+ YL H L + +LA
Sbjct: 130 ------------------NPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLA 171
Query: 566 ESLEPKIAGFGL---------------RNIGVKNVG-ERSENETCGPESDVYCFGVILME 609
E + +A FGL + VK + E + SDV+ FGV + E
Sbjct: 172 EDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWE 231
Query: 610 LLTGKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAE----MVESLRVGYLCTAD 665
++T RG AG + + L G+ + + M E + Y C +
Sbjct: 232 IMT--RGQ-----------TPYAGIENAEIYNYLIGGNRLKQPPECMEEVYDLMYQCWSA 278
Query: 666 SPGKRPT-------MQQVLGLLKDIRPSAD 688
P +RP+ ++ +LG L + S D
Sbjct: 279 DPKQRPSFTCLRMELENILGHLSVLSTSQD 308
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 14 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 70
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 71 AVVSEEPIYIVTEYMSKGSLLDFLK----GE----------------MGKYLRLPQLVD- 109
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 110 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 164
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 165 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 217
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 218 QVERGYRMPCPPECPESLHDLMCQ--CWRKDPEERPTFEYLQAFLEDYFTSTE 268
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 80
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 81 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 114
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 115 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAK 174
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 175 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 228
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 229 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 263
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 52 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 106
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 107 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 156
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ YL H L + +L E K+A FGL
Sbjct: 157 FG------------------LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGL 198
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 199 ARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 251
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 33 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 87
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 88 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 137
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ YL H L + +L E K+A FGL
Sbjct: 138 FG------------------LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGL 179
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 180 ARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 232
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 89/217 (41%), Gaps = 45/217 (20%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VAIK L + + + + +LKH L+ L Y +
Sbjct: 17 LGNGQFGEVWMGTWNGNTKVAIKTLKPGT-MSPESFLEEAQIMKKLKHDKLVQL--YAVV 73
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M G L +L + G G + P +
Sbjct: 74 SEEPIYIVTEYMNKGSLLDFLKD--------------------GEGRALKLPNLVD---- 109
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A VA G+AY+ + H L +++IL+ L KIA FGL + N G +
Sbjct: 110 --MAAQVAAGMAYIERMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEXTARQGAK 167
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR 615
+ PE SDV+ FG++L EL+T R
Sbjct: 168 FPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGR 204
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 120/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 23 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 79
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + +++E+M+ G L +L GE G ++ P+ +
Sbjct: 80 AVVSEEPIYIVMEYMSKGCLLDFLK----GE----------------MGKYLRLPQLVD- 118
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 119 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 226
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 227 QVERGYRMPCPPECPESLHDLMCQ--CWRKDPEERPTFEYLQAFLEDYFTSTE 277
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 25 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 79
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 80 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 129
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ YL H L + +L E K+A FGL
Sbjct: 130 FG------------------LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGL 171
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 172 ARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 224
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 12 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 68
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 69 AVVSEEPIYIVTEYMSKGSLLDFLK----GE----------------MGKYLRLPQLVD- 107
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 108 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 162
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 163 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 215
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 216 QVERGYRMPCPPECPESLHDLMCQ--CWRKDPEERPTFEYLQAFLEDYFTSTE 266
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + + +L G G VY+ + E + VAIK+L+ G + V DE
Sbjct: 11 ILKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKAN--VEFMDEA 68
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + HP+L+ L G C++ +LV + M +G L ++HE H
Sbjct: 69 LIMASMDHPHLVRLLGVCLSPTIQLVT-QLMPHGCLLEYVHE-----------------H 110
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS + NW + +A+G+ YL H L ++L+ KI
Sbjct: 111 KDNIGSQLL----LNW------CVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITD 160
Query: 575 FGLRNIGVKNVGERSENETCGP----------------ESDVYCFGVILMELLT 612
FGL + + E + + P +SDV+ +GV + EL+T
Sbjct: 161 FGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMT 214
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 82 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 115
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 116 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 175
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 176 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 229
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 230 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 264
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 23 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 79
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 80 AVVSEEPIYIVTEYMSKGSLLDFLK----GE----------------MGKYLRLPQLVD- 118
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 119 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 226
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 227 QVERGYRMPCPPECPESLHDLMCQ--CWRKDPEERPTFEYLQAFLEDYFTSTE 277
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 82 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 115
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 116 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAK 175
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 176 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 229
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 230 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 264
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 23 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 79
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 80 AVVSEEPIYIVCEYMSKGSLLDFLK----GE----------------MGKYLRLPQLVD- 118
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 119 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 226
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 227 QVERGYRMPCPPECPESLHDLMCQ--CWRKDPEERPTFEYLQAFLEDYFTSTE 277
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 81
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 82 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 115
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 116 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 175
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 176 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 229
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 230 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 264
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 51 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 105
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 106 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 155
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ YL H L + +L E K+A FGL
Sbjct: 156 FG------------------LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGL 197
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 198 ARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 250
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 32 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 86
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 87 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 136
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ YL H L + +L E K+A FGL
Sbjct: 137 FG------------------LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGL 178
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 179 ARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 231
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 30 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 84
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 85 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 134
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ YL H L + +L E K+A FGL
Sbjct: 135 FG------------------LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGL 176
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 177 ARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 229
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E N V
Sbjct: 85 REPPFYIITEFMTYGNLLDYLRECNRQEVNA--------------------------VVL 118
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 119 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 178
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 179 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 232
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 233 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 267
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 33 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 87
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 88 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 137
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ YL H L + +L E K+A FGL
Sbjct: 138 FG------------------LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGL 179
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 180 ARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 232
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 31 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 87
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 88 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 123
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + N G +
Sbjct: 124 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAK 181
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 182 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 236
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 237 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 277
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 117/295 (39%), Gaps = 66/295 (22%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L G+ G V+ A VA+K + + + +A + + L+H L+ L +
Sbjct: 20 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKL--H 76
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ KE + ++ EFMA G L +L GS P+ ++
Sbjct: 77 AVVTKEPIYIITEFMAKGSLLDFLKS--------------------DEGSKQPLPKLIDF 116
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+ +A G+A++ H L ++IL++ SL KIA FGL + N
Sbjct: 117 SAQ------IAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTARE 170
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKR------GTDDCVKWVRKLVK 629
G + + PE SDV+ FG++LME++T R + ++
Sbjct: 171 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIR------- 223
Query: 630 EGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIR 684
AL+ ++ ++ E E + C + P +RPT + + +L D
Sbjct: 224 ------ALERGYRMPRPENCPE--ELYNIMMRCWKNRPEERPTFEYIQSVLDDFE 270
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 29 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 85
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 86 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 121
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + N G +
Sbjct: 122 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAK 179
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 180 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 234
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 235 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 275
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 28 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 82
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 83 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 132
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ YL H L + +L E K+A FGL
Sbjct: 133 FG------------------LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGL 174
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 175 ARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 227
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 31 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 85
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 86 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 135
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ YL H L + +L E K+A FGL
Sbjct: 136 FG------------------LQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGL 177
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 178 ARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 230
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 119/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 17 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 73
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 74 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 109
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H +L ++IL++++L KIA FGL + N G +
Sbjct: 110 --MAAQIAEGMAFIEERNYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAK 167
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 168 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 222
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 223 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 263
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 128/305 (41%), Gaps = 58/305 (19%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRL- 460
FGK L G G V A G L VA+K+L + D +A + EL +
Sbjct: 49 QFGKT--LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA--LMSELKIMS 104
Query: 461 ---KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
+H N++ L G C G LV+ E+ GDL L+ L P ++S + H+P
Sbjct: 105 HLGQHENIVNLLGACTHGGPVLVITEYCCYGDL---LNFLRRKRPPGLEYSYNP-SHNP- 159
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
+SS + ++ ++ VA+G+A+L H + ++LL KI FGL
Sbjct: 160 -EEQLSSRDLLHFSSQ------VAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGL 212
Query: 578 -RNI-----GVKNVGERSENETCGPE----------SDVYCFGVILMEL----LTGKRGT 617
R+I + R + PE SDV+ +G++L E+ L G
Sbjct: 213 ARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI 272
Query: 618 DDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
K+ KLVK+G F K ++ ++++ C A P RPT QQ+
Sbjct: 273 LVNSKFY-KLVKDGYQMAQPAFAPK-----NIYSIMQA------CWALEPTHRPTFQQIC 320
Query: 678 GLLKD 682
L++
Sbjct: 321 SFLQE 325
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 83
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 84 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 119
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + N G +
Sbjct: 120 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAK 177
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 178 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 232
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 233 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 273
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 15/206 (7%)
Query: 58 TPIRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKN 117
T + L ++ N+SG I FL + L ++D S N+L G++P S +L + N
Sbjct: 101 TQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 118 RFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMV--LDVSNN----DLRI 171
R G I S + F S+ + S NR T + F+ L + +D+S N D +
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTI---SRNRLTGKIP-PTFANLNLAFVDLSRNMLEGDASV 215
Query: 172 LPSGFANLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKF 231
L F + + + ++ ++ ++ V +L LD+ NN + GT P L +
Sbjct: 216 L---FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 232 LNISLNKFTGFVGH-DKYQKFGKSAF 256
LN+S N G + Q+F SA+
Sbjct: 273 LNVSFNNLCGEIPQGGNLQRFDVSAY 298
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 83
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 84 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 119
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + N G +
Sbjct: 120 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAK 177
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 178 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 232
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 233 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 273
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 98/232 (42%), Gaps = 57/232 (24%)
Query: 411 KESLLAEGRCGPVYRAVLPG-----ELHVAIKVLDNAKGIDHDDAVAMFDE---LSRLKH 462
++ ++ G G VY+ +L E+ VAIK L G V E + + H
Sbjct: 48 RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLK--AGYTEKQRVDFLGEAGIMGQFSH 105
Query: 463 PNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHI 522
N++ L G K +++ E+M NG L ++L E GE +V
Sbjct: 106 HNIIRLEGVISKYKPMMIITEYMENGALDKFLRE-KDGEFSV------------------ 146
Query: 523 SSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGV 582
V R G+A G+ YL ++ H L +IL+ +L K++ FGL + +
Sbjct: 147 -----LQLVGMLR---GIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRV-L 197
Query: 583 KNVGERSENETCG--------PE----------SDVYCFGVILMELLT-GKR 615
++ E + + G PE SDV+ FG+++ E++T G+R
Sbjct: 198 EDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGER 249
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 30 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 86
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 87 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 122
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + N G +
Sbjct: 123 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAK 180
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 181 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 235
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 236 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 276
>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 14 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEIXINKMLNHENVVKFYGHR 73
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 74 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 109
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 110 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
G PE DV+ G++L +L G+ + +D C ++
Sbjct: 166 MXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 217
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 94/234 (40%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + + +L G G VY+ + E + VAIK+L+ G + V DE
Sbjct: 34 ILKETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKAN--VEFMDEA 91
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + HP+L+ L G C++ +LV + M +G L ++HE H
Sbjct: 92 LIMASMDHPHLVRLLGVCLSPTIQLVT-QLMPHGCLLEYVHE-----------------H 133
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS + NW + +A+G+ YL H L ++L+ KI
Sbjct: 134 KDNIGSQLL----LNW------CVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITD 183
Query: 575 FGLRNIGVKNVGERSENETCGP----------------ESDVYCFGVILMELLT 612
FGL + + E + + P +SDV+ +GV + EL+T
Sbjct: 184 FGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMT 237
>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
pdb|2YDJ|B Chain B, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By
Structure Based Design And Optimization Of Thiophene
Carboxamide Ureas
Length = 276
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 15 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEIXINKMLNHENVVKFYGHR 74
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 75 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 110
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 111 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 166
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
G PE DV+ G++L +L G+ + +D C ++
Sbjct: 167 MXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 218
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 83/214 (38%), Gaps = 43/214 (20%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+++EFM G+L +L E E + V
Sbjct: 78 REPPFYIIIEFMTYGNLLDYLRECNRQEVSA--------------------------VVL 111
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 112 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAK 171
Query: 589 SENETCGPE----------SDVYCFGVILMELLT 612
+ PE SDV+ FGV+L E+ T
Sbjct: 172 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 205
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 26 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 82
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 83 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 118
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + N G +
Sbjct: 119 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAK 176
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 177 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 231
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 232 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 272
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 23 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 79
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 80 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 115
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + N G +
Sbjct: 116 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAK 173
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 174 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 228
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 229 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 269
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 85/222 (38%), Gaps = 53/222 (23%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE---LSRLKHPNLLPLAGY 471
+ G G VY+ G+ VA+K+L N A +E L + +H N+L GY
Sbjct: 21 IGSGSFGTVYKGKWHGD--VAVKML-NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 77
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
+ +V ++ L+ LH + T K +
Sbjct: 78 STKPQLAIVT-QWCEGSSLYHHLHIIET---------------------------KFEMI 109
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
IA A+G+ YLH H L +++I L E L KI FGL + + G
Sbjct: 110 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 169
Query: 592 ETCG------PE-------------SDVYCFGVILMELLTGK 614
+ G PE SDVY FG++L EL+TG+
Sbjct: 170 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 211
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 77
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 78 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 113
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + N G +
Sbjct: 114 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAK 171
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 172 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 226
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 227 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 267
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 85/222 (38%), Gaps = 53/222 (23%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE---LSRLKHPNLLPLAGY 471
+ G G VY+ G+ VA+K+L N A +E L + +H N+L GY
Sbjct: 21 IGSGSFGTVYKGKWHGD--VAVKML-NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 77
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
+ +V ++ L+ LH + T K +
Sbjct: 78 STKPQLAIVT-QWCEGSSLYHHLHIIET---------------------------KFEMI 109
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
IA A+G+ YLH H L +++I L E L KI FGL + + G
Sbjct: 110 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 169
Query: 592 ETCG------PE-------------SDVYCFGVILMELLTGK 614
+ G PE SDVY FG++L EL+TG+
Sbjct: 170 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 211
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 22 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 78
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 79 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 114
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + N G +
Sbjct: 115 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAK 172
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 173 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 227
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 228 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 268
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 77
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 78 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 113
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + N G +
Sbjct: 114 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAK 171
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 172 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 226
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 227 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 267
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 77
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 78 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 113
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + N G +
Sbjct: 114 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAK 171
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 172 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 226
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 227 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 267
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 31 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 85
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 86 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 135
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ +L H L + +L E K+A FGL
Sbjct: 136 FG------------------LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGL 177
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 178 ARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 230
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 112/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 286
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E + V
Sbjct: 287 REPPFYIITEFMTYGNLLDYLRECNRQEVSA--------------------------VVL 320
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H +L + L+ E+ K+A FGL + + G +
Sbjct: 321 LYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 380
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 381 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 434
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 435 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 469
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 85/222 (38%), Gaps = 53/222 (23%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE---LSRLKHPNLLPLAGY 471
+ G G VY+ G+ VA+K+L N A +E L + +H N+L GY
Sbjct: 18 IGSGSFGTVYKGKWHGD--VAVKML-NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 74
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
+ +V ++ L+ LH + T K +
Sbjct: 75 STKPQLAIVT-QWCEGSSLYHHLHIIET---------------------------KFEMI 106
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
IA A+G+ YLH H L +++I L E L KI FGL + + G
Sbjct: 107 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 166
Query: 592 ETCG------PE-------------SDVYCFGVILMELLTGK 614
+ G PE SDVY FG++L EL+TG+
Sbjct: 167 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 208
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 85/222 (38%), Gaps = 53/222 (23%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE---LSRLKHPNLLPLAGY 471
+ G G VY+ G+ VA+K+L N A +E L + +H N+L GY
Sbjct: 43 IGSGSFGTVYKGKWHGD--VAVKML-NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 99
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
+ +V ++ L+ LH + T K +
Sbjct: 100 STKPQLAIVT-QWCEGSSLYHHLHIIET---------------------------KFEMI 131
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
IA A+G+ YLH H L +++I L E L KI FGL + + G
Sbjct: 132 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 191
Query: 592 ETCG------PE-------------SDVYCFGVILMELLTGK 614
+ G PE SDVY FG++L EL+TG+
Sbjct: 192 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 233
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 85/222 (38%), Gaps = 53/222 (23%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE---LSRLKHPNLLPLAGY 471
+ G G VY+ G+ VA+K+L N A +E L + +H N+L GY
Sbjct: 44 IGSGSFGTVYKGKWHGD--VAVKML-NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 100
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
+ +V ++ L+ LH + T K +
Sbjct: 101 STKPQLAIVT-QWCEGSSLYHHLHIIET---------------------------KFEMI 132
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
IA A+G+ YLH H L +++I L E L KI FGL + + G
Sbjct: 133 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 192
Query: 592 ETCG------PE-------------SDVYCFGVILMELLTGK 614
+ G PE SDVY FG++L EL+TG+
Sbjct: 193 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 234
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 117/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 21 LGAGQAGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 77
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 78 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 113
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + G +
Sbjct: 114 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAK 171
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 172 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 226
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 227 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 267
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 112/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+++EFM G+L +L E E + V
Sbjct: 80 REPPFYIIIEFMTYGNLLDYLRECNRQEVSA--------------------------VVL 113
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 114 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 173
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 227
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 228 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 262
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 61/232 (26%)
Query: 414 LLAEGRCGPVYRAVLPGE----LHVAIKV--LDNAKGIDHDDAVAMFDELSRLKHPNLLP 467
+L EG G V L E L VA+K LDN+ + ++ ++ + HPN++
Sbjct: 41 ILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIR 100
Query: 468 LAGYCIAGKEK-----LVLLEFMANGDLHRWL--HELPTGEPNVEDWSTDTWDHHPGAGS 520
L G CI + +V+L FM GDLH +L L TG
Sbjct: 101 LLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETG-------------------- 140
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRN- 579
P+ T + + +A G+ YL + H L + +L + + +A FGL
Sbjct: 141 ----PKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKK 196
Query: 580 -------------------IGVKNVGERSENETCGPESDVYCFGVILMELLT 612
I ++++ +R +SDV+ FGV + E+ T
Sbjct: 197 IYSGDYYRQGRIAKMPVKWIAIESLADRVYTS----KSDVWAFGVTMWEIAT 244
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 85/222 (38%), Gaps = 53/222 (23%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE---LSRLKHPNLLPLAGY 471
+ G G VY+ G+ VA+K+L N A +E L + +H N+L GY
Sbjct: 16 IGSGSFGTVYKGKWHGD--VAVKML-NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
+ +V ++ L+ LH + T K +
Sbjct: 73 STKPQLAIVT-QWCEGSSLYHHLHIIET---------------------------KFEMI 104
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
IA A+G+ YLH H L +++I L E L KI FGL + + G
Sbjct: 105 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 164
Query: 592 ETCG------PE-------------SDVYCFGVILMELLTGK 614
+ G PE SDVY FG++L EL+TG+
Sbjct: 165 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 206
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +++H L+ L Y
Sbjct: 23 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKIRHEKLVQL--Y 79
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 80 AVVSEEPIYIVTEYMSKGSLLDFLK----GE----------------MGKYLRLPQLVD- 118
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 119 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 226
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 227 QVERGYRMPCPPECPESLHDLMCQ--CWRKDPEERPTFEYLQAFLEDYFTSTE 277
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 112/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+++EFM G+L +L E E + V
Sbjct: 80 REPPFYIIIEFMTYGNLLDYLRECNRQEVSA--------------------------VVL 113
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 114 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 173
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 227
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 228 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 262
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 119/299 (39%), Gaps = 66/299 (22%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L G+ G V+ A VA+K + + + +A + + L+H L+ L +
Sbjct: 193 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKL--H 249
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ KE + ++ EFMA G L +L GS P+ ++
Sbjct: 250 AVVTKEPIYIITEFMAKGSLLDFLKS--------------------DEGSKQPLPKLIDF 289
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+ +A G+A++ H L ++IL++ SL KIA FGL + N
Sbjct: 290 SAQ------IAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTARE 343
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKR------GTDDCVKWVRKLVK 629
G + + PE SDV+ FG++LME++T R + ++
Sbjct: 344 GAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIR------- 396
Query: 630 EGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
AL+ ++ ++ E E + C + P +RPT + + +L D + +
Sbjct: 397 ------ALERGYRMPRPENCPE--ELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTATE 447
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 33 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 87
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 88 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 137
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ +L H L + +L E K+A FGL
Sbjct: 138 FG------------------LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGL 179
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 180 ARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 232
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 59/257 (22%)
Query: 391 KPLVNYLTFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPG--ELHVAIK 437
+ V+ TF+D F KE ++ G G V R LP E+ VAIK
Sbjct: 20 RTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIK 79
Query: 438 VLD-NAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
L D + + + HPN++ L G K +++ E+M NG L +L +
Sbjct: 80 TLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRK 139
Query: 497 LPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGH 556
H + V R G+A G+ YL +G H
Sbjct: 140 ------------------------HDAQFTVIQLVGMLR---GIASGMKYLSDMGYVHRD 172
Query: 557 LVTSSILLAESLEPKIAGFGLRNI-------GVKNVGERSENETCGPE----------SD 599
L +IL+ +L K++ FGL + G + PE SD
Sbjct: 173 LAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASD 232
Query: 600 VYCFGVILMELLT-GKR 615
V+ +G++L E+++ G+R
Sbjct: 233 VWSYGIVLWEVMSYGER 249
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 119/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 23 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 79
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M+ G L +L GE G ++ P+ +
Sbjct: 80 AVVSEEPIYIVTEYMSKGCLLDFLK----GE----------------MGKYLRLPQLVD- 118
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
+A +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 119 -----MAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 173
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 174 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 226
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 227 QVERGYRMPCPPECPESLHDLMCQ--CWRKDPEERPTFEYLQAFLEDYFTSTE 277
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 120/304 (39%), Gaps = 58/304 (19%)
Query: 409 FGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRL-- 460
FGK L G G V A G + VA+K+L + + +A + EL L
Sbjct: 27 FGKT--LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREA--LMSELKVLSY 82
Query: 461 --KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGA 518
H N++ L G C G LV+ E+ GDL +L D++ +
Sbjct: 83 LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRR-----------KRDSFICSKTS 131
Query: 519 GSHISSPEKTNWVTRHR-IAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
+ + E + + VA+G+A+L H L +ILL KI FGL
Sbjct: 132 PAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGL 191
Query: 578 -------RNIGVKN---------VGERSENETCGPESDVYCFGVILMELL----TGKRGT 617
N VK E N ESDV+ +G+ L EL + G
Sbjct: 192 ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM 251
Query: 618 DDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
K+ K++KEG FR+ L + AEM + ++ C P KRPT +Q++
Sbjct: 252 PVDSKFY-KMIKEG-------FRM-LSPEHAPAEMYDIMKT---CWDADPLKRPTFKQIV 299
Query: 678 GLLK 681
L++
Sbjct: 300 QLIE 303
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 118/285 (41%), Gaps = 54/285 (18%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V+ G VA+K L + D +A + + +L+H L+ L Y +
Sbjct: 16 LGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRL--YAVV 72
Query: 475 GKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
+E + ++ E+M NG L +L + P+G + D
Sbjct: 73 TQEPIYIITEYMENGSLVDFL-KTPSGIKLTINKLLD----------------------- 108
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGER 588
+A +A G+A++ H L ++IL++++L KIA FGL + N G +
Sbjct: 109 --MAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAK 166
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDALD 638
+ PE SDV+ FG++L E++T R + + E
Sbjct: 167 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGR-----IPYPGMTNPEVIQNLERG 221
Query: 639 FRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+R+ + + E+ + +R LC + P RPT + +L+D
Sbjct: 222 YRM-VRPDNCPEELYQLMR---LCWKERPEDRPTFDYLRSVLEDF 262
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 34 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 88
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 89 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 138
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ +L H L + +L E K+A FGL
Sbjct: 139 FG------------------LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGL 180
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 181 ARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 233
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 59/257 (22%)
Query: 391 KPLVNYLTFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPG--ELHVAIK 437
+ V+ TF+D F KE ++ G G V R LP E+ VAIK
Sbjct: 20 RTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIK 79
Query: 438 VLD-NAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
L D + + + HPN++ L G K +++ E+M NG L +L +
Sbjct: 80 TLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRK 139
Query: 497 LPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGH 556
H + V R G+A G+ YL +G H
Sbjct: 140 ------------------------HDAQFTVIQLVGMLR---GIASGMKYLSDMGYVHRD 172
Query: 557 LVTSSILLAESLEPKIAGFGLRNI-------GVKNVGERSENETCGPE----------SD 599
L +IL+ +L K++ FGL + G + PE SD
Sbjct: 173 LAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASD 232
Query: 600 VYCFGVILMELLT-GKR 615
V+ +G++L E+++ G+R
Sbjct: 233 VWSYGIVLWEVMSYGER 249
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 120/304 (39%), Gaps = 58/304 (19%)
Query: 409 FGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRL-- 460
FGK L G G V A G + VA+K+L + + +A + EL L
Sbjct: 43 FGKT--LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREA--LMSELKVLSY 98
Query: 461 --KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGA 518
H N++ L G C G LV+ E+ GDL +L D++ +
Sbjct: 99 LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRR-----------KRDSFICSKTS 147
Query: 519 GSHISSPEKTNWVTRHR-IAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
+ + E + + VA+G+A+L H L +ILL KI FGL
Sbjct: 148 PAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGL 207
Query: 578 -------RNIGVKN---------VGERSENETCGPESDVYCFGVILMELL----TGKRGT 617
N VK E N ESDV+ +G+ L EL + G
Sbjct: 208 ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM 267
Query: 618 DDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
K+ K++KEG FR+ L + AEM + ++ C P KRPT +Q++
Sbjct: 268 PVDSKFY-KMIKEG-------FRM-LSPEHAPAEMYDIMKT---CWDADPLKRPTFKQIV 315
Query: 678 GLLK 681
L++
Sbjct: 316 QLIE 319
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 120/304 (39%), Gaps = 58/304 (19%)
Query: 409 FGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRL-- 460
FGK L G G V A G + VA+K+L + + +A + EL L
Sbjct: 50 FGKT--LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREA--LMSELKVLSY 105
Query: 461 --KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGA 518
H N++ L G C G LV+ E+ GDL +L D++ +
Sbjct: 106 LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRR-----------KRDSFICSKTS 154
Query: 519 GSHISSPEKTNWVTRHR-IAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
+ + E + + VA+G+A+L H L +ILL KI FGL
Sbjct: 155 PAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGL 214
Query: 578 -------RNIGVKN---------VGERSENETCGPESDVYCFGVILMELL----TGKRGT 617
N VK E N ESDV+ +G+ L EL + G
Sbjct: 215 ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM 274
Query: 618 DDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
K+ K++KEG FR+ L + AEM + ++ C P KRPT +Q++
Sbjct: 275 PVDSKFY-KMIKEG-------FRM-LSPEHAPAEMYDIMKT---CWDADPLKRPTFKQIV 322
Query: 678 GLLK 681
L++
Sbjct: 323 QLIE 326
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 59/257 (22%)
Query: 391 KPLVNYLTFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPG--ELHVAIK 437
+ V+ TF+D F KE ++ G G V R LP E+ VAIK
Sbjct: 20 RTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIK 79
Query: 438 VLD-NAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
L D + + + HPN++ L G K +++ E+M NG L +L +
Sbjct: 80 TLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRK 139
Query: 497 LPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGH 556
H + V R G+A G+ YL +G H
Sbjct: 140 ------------------------HDAQFTVIQLVGMLR---GIASGMKYLSDMGFVHRD 172
Query: 557 LVTSSILLAESLEPKIAGFGLRNI-------GVKNVGERSENETCGPE----------SD 599
L +IL+ +L K++ FGL + G + PE SD
Sbjct: 173 LAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASD 232
Query: 600 VYCFGVILMELLT-GKR 615
V+ +G++L E+++ G+R
Sbjct: 233 VWSYGIVLWEVMSYGER 249
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 33 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 87
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 88 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 137
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ +L H L + +L E K+A FGL
Sbjct: 138 FG------------------LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGL 179
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 180 ARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 232
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 120/304 (39%), Gaps = 58/304 (19%)
Query: 409 FGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRL-- 460
FGK L G G V A G + VA+K+L + + +A + EL L
Sbjct: 45 FGKT--LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREA--LMSELKVLSY 100
Query: 461 --KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGA 518
H N++ L G C G LV+ E+ GDL +L D++ +
Sbjct: 101 LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRR-----------KRDSFICSKTS 149
Query: 519 GSHISSPEKTNWVTRHR-IAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
+ + E + + VA+G+A+L H L +ILL KI FGL
Sbjct: 150 PAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGL 209
Query: 578 -------RNIGVKN---------VGERSENETCGPESDVYCFGVILMELL----TGKRGT 617
N VK E N ESDV+ +G+ L EL + G
Sbjct: 210 ARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM 269
Query: 618 DDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
K+ K++KEG FR+ L + AEM + ++ C P KRPT +Q++
Sbjct: 270 PVDSKFY-KMIKEG-------FRM-LSPEHAPAEMYDIMKT---CWDADPLKRPTFKQIV 317
Query: 678 GLLK 681
L++
Sbjct: 318 QLIE 321
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 38 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 92
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 93 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 142
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ +L H L + +L E K+A FGL
Sbjct: 143 FG------------------LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGL 184
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 185 ARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 237
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 120/304 (39%), Gaps = 58/304 (19%)
Query: 409 FGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRL-- 460
FGK L G G V A G + VA+K+L + + +A + EL L
Sbjct: 50 FGKT--LGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREA--LMSELKVLSY 105
Query: 461 --KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGA 518
H N++ L G C G LV+ E+ GDL +L D++ +
Sbjct: 106 LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRR-----------KRDSFICSKTS 154
Query: 519 GSHISSPEKTNWVTRHR-IAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
+ + E + + VA+G+A+L H L +ILL KI FGL
Sbjct: 155 PAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGL 214
Query: 578 -------RNIGVKN---------VGERSENETCGPESDVYCFGVILMELL----TGKRGT 617
N VK E N ESDV+ +G+ L EL + G
Sbjct: 215 ARHIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM 274
Query: 618 DDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
K+ K++KEG FR+ L + AEM + ++ C P KRPT +Q++
Sbjct: 275 PVDSKFY-KMIKEG-------FRM-LSPEHAPAEMYDIMKT---CWDADPLKRPTFKQIV 322
Query: 678 GLLK 681
L++
Sbjct: 323 QLIE 326
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 118/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 20 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 76
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M G L +L GE G ++ P+ +
Sbjct: 77 AVVSEEPIYIVTEYMNKGSLLDFLK----GE----------------TGKYLRLPQLVD- 115
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
++ +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 116 -----MSAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEWTARQ 170
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 171 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 223
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 224 QVERGYRMPCPPECPESLHDLMCQ--CWRKEPEERPTFEYLQAFLEDYFTSTE 274
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 92 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 146
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 147 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 196
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ +L H L + +L E K+A FGL
Sbjct: 197 FG------------------LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGL 238
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 239 ARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 291
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 94/250 (37%), Gaps = 59/250 (23%)
Query: 398 TFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPG--ELHVAIKVLD-NAK 443
TF+D F KE ++ G G V R LP E+ VAIK L
Sbjct: 27 TFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYT 86
Query: 444 GIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPN 503
D + + + HPN++ L G K +++ E+M NG L +L +
Sbjct: 87 EKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRK------- 139
Query: 504 VEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSIL 563
H + V R G+A G+ YL +G H L +IL
Sbjct: 140 -----------------HDAQFTVIQLVGMLR---GIASGMKYLSDMGYVHRDLAARNIL 179
Query: 564 LAESLEPKIAGFGLRNI-------GVKNVGERSENETCGPE----------SDVYCFGVI 606
+ +L K++ FGL + G + PE SDV+ +G++
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 239
Query: 607 LMELLT-GKR 615
L E+++ G+R
Sbjct: 240 LWEVMSYGER 249
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 61/233 (26%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG----ELHVAIKVLDNAKGIDH-----DDAVAMFDELS 458
HF + ++ G G VY L ++H A+K L+ I + + M D
Sbjct: 34 HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKD--- 88
Query: 459 RLKHPNLLPLAGYCIAGK-EKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
HPN+L L G C+ + LV+L +M +GDL ++ T P V+D G
Sbjct: 89 -FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRN-ETHNPTVKDLI--------G 138
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + VA+G+ +L H L + +L E K+A FGL
Sbjct: 139 FG------------------LQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGL 180
Query: 578 -RNIGVKNVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
R++ K E + + +SDV+ FGV+L EL+T
Sbjct: 181 ARDMLDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 233
>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1
pdb|4FTA|A Chain A, Crystal Structure Of The Chk1
pdb|4FTC|A Chain A, Crystal Structure Of The Chk1
pdb|4FTN|A Chain A, Crystal Structure Of The Chk1
pdb|4FTQ|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 14 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 73
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 74 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 109
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 110 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
G PE DV+ G++L +L G+ + +D C ++
Sbjct: 166 MXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 217
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 59/257 (22%)
Query: 391 KPLVNYLTFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPG--ELHVAIK 437
+ V+ TF+D F KE ++ G G V R LP E+ VAIK
Sbjct: 20 RTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIK 79
Query: 438 VLD-NAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
L D + + + HPN++ L G K +++ E+M NG L +L +
Sbjct: 80 TLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRK 139
Query: 497 LPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGH 556
H + V R G+A G+ YL +G H
Sbjct: 140 ------------------------HDAQFTVIQLVGMLR---GIASGMKYLSDMGYVHRD 172
Query: 557 LVTSSILLAESLEPKIAGFGLRNI-------GVKNVGERSENETCGPE----------SD 599
L +IL+ +L K++ FGL + G + PE SD
Sbjct: 173 LAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASD 232
Query: 600 VYCFGVILMELLT-GKR 615
V+ +G++L E+++ G+R
Sbjct: 233 VWSYGIVLWEVMSYGER 249
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 118/293 (40%), Gaps = 54/293 (18%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E L +G G V+ G VAIK L + + + + +L+H L+ L Y
Sbjct: 20 EVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQL--Y 76
Query: 472 CIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNW 530
+ +E + ++ E+M G L +L GE G ++ P+ +
Sbjct: 77 AVVSEEPIYIVTEYMNKGSLLDFLK----GE----------------TGKYLRLPQLVD- 115
Query: 531 VTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----V 585
++ +A G+AY+ + H L ++IL+ E+L K+A FGL + N
Sbjct: 116 -----MSAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQ 170
Query: 586 GERSENETCGPE----------SDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGD 635
G + + PE SDV+ FG++L EL T R V + + +E D
Sbjct: 171 GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGR-----VPYPGMVNREVL--D 223
Query: 636 ALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSAD 688
++ ++ E + L C P +RPT + + L+D S +
Sbjct: 224 QVERGYRMPCPPECPESLHDLMCQ--CWRKEPEERPTFEYLQAFLEDYFTSTE 274
>pdb|4FST|A Chain A, Crystal Structure Of The Chk1
Length = 269
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 51/232 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 14 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 73
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 74 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 109
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 110 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK----RGTDDCVKW 623
G PE DV+ G++L +L G+ + +D C ++
Sbjct: 166 MXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEY 217
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 100/259 (38%), Gaps = 61/259 (23%)
Query: 391 KPLVNYLTFKDLIAATSHFGKE---------SLLAEGRCGPVYRA--VLPG--ELHVAIK 437
K ++ TF+D A F KE ++ G G V LPG E+ VAIK
Sbjct: 8 KIFIDPFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIK 67
Query: 438 VLDNA-KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
L + D ++ + + HPN++ L G +++ EFM NG L +L +
Sbjct: 68 TLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQ 127
Query: 497 LPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGH 556
G+ V + + G+A G+ YL + H
Sbjct: 128 -NDGQFTV--------------------------IQLVGMLRGIAAGMKYLADMNYVHRD 160
Query: 557 LVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENETCG---------PE---------- 597
L +IL+ +L K++ FGL + + + G PE
Sbjct: 161 LAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSA 220
Query: 598 SDVYCFGVILMELLT-GKR 615
SDV+ +G+++ E+++ G+R
Sbjct: 221 SDVWSYGIVMWEVMSYGER 239
>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1
pdb|4GH2|A Chain A, Crystal Structure Of The Chk1
Length = 279
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 91/219 (41%), Gaps = 47/219 (21%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLLPLAGYC 472
L EG G V AV E VA+K++D + +D + + +++ L H N++ G+
Sbjct: 14 LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 73
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVT 532
G + + LE+ + G+L + EP+ I PE
Sbjct: 74 REGNIQYLFLEYCSGGELFDRI------EPD------------------IGMPEPDAQRF 109
Query: 533 RHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENE 592
H++ GV YLH +G TH + ++LL E KI+ FGL + N ER N+
Sbjct: 110 FHQLMAGV----VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK 165
Query: 593 TCG------PE-----------SDVYCFGVILMELLTGK 614
G PE DV+ G++L +L G+
Sbjct: 166 MXGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE 204
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 84
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E + V
Sbjct: 85 REPPFYIITEFMTYGNLLDYLRECNRQEVSA--------------------------VVL 118
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 119 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 178
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 179 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 232
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 233 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 267
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 43/214 (20%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 19 LGGGQFGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E + V
Sbjct: 78 REPPFYIITEFMTYGNLLDYLRECNRQEVSA--------------------------VVL 111
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 112 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAK 171
Query: 589 SENETCGPE----------SDVYCFGVILMELLT 612
+ PE SDV+ FGV+L E+ T
Sbjct: 172 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 205
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 59/257 (22%)
Query: 391 KPLVNYLTFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPG--ELHVAIK 437
+ V+ TF+D F KE ++ G G V R LP E+ VAIK
Sbjct: 20 RTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIK 79
Query: 438 VLD-NAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
L D + + + HPN++ L G K +++ E M NG L +L +
Sbjct: 80 TLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRK 139
Query: 497 LPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGH 556
H + V R G+A G+ YL +G+ H
Sbjct: 140 ------------------------HDAQFTVIQLVGMLR---GIASGMKYLSDMGAVHRD 172
Query: 557 LVTSSILLAESLEPKIAGFGLRNI-------GVKNVGERSENETCGPE----------SD 599
L +IL+ +L K++ FGL + G + PE SD
Sbjct: 173 LAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASD 232
Query: 600 VYCFGVILMELLT-GKR 615
V+ +G++L E+++ G+R
Sbjct: 233 VWSYGIVLWEVMSYGER 249
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 93/237 (39%), Gaps = 56/237 (23%)
Query: 406 TSHFGKESLLAEGRCGPVYRAVL--PG--ELHVAIKVLDNAKGIDHDDAVAMFDELS--- 458
S+ E ++ G G V R L PG E VAIK L G E S
Sbjct: 15 VSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKG--GYTERQRREFLSEASIMG 72
Query: 459 RLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGA 518
+ +HPN++ L G ++L EFM NG L +L L G+ V
Sbjct: 73 QFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLR-LNDGQFTV-------------- 117
Query: 519 GSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLR 578
+ + G+A G+ YL + H L +IL+ +L K++ FGL
Sbjct: 118 ------------IQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLS 165
Query: 579 NIGVKNVGERSENETCG---------PE----------SDVYCFGVILMELLT-GKR 615
+N + +E + G PE SD + +G+++ E+++ G+R
Sbjct: 166 RFLEENSSDPTETSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGER 222
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 88/225 (39%), Gaps = 59/225 (26%)
Query: 415 LAEGRCGPVYRAVLPGELHVAI-KVLD----NAKGIDHDDAVAMFDELSRLKHPNLLPLA 469
+ G G VY+ G++ V I KV+D + ++ AV L + +H N+L
Sbjct: 44 IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAV-----LRKTRHVNILLFM 98
Query: 470 GYCIAGKEKLVLLEFMANGD-LHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKT 528
GY K+ L ++ G L++ LH T K
Sbjct: 99 GYMT--KDNLAIVTQWCEGSSLYKHLHVQET---------------------------KF 129
Query: 529 NWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGER 588
IA A+G+ YLH H + +++I L E L KI FGL + + G +
Sbjct: 130 QMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQ 189
Query: 589 SENETCG------PE-------------SDVYCFGVILMELLTGK 614
+ G PE SDVY +G++L EL+TG+
Sbjct: 190 QVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGE 234
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 111/284 (39%), Gaps = 64/284 (22%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E + V
Sbjct: 80 REPPFYIITEFMTYGNLLDYLRECNRQEVSA--------------------------VVL 113
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 114 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 173
Query: 589 SENETCGPE----------SDVYCFGVILMELLTGKR----GTDDCVKWVRKLVKEGAGG 634
+ PE SDV+ FGV+L E+ T G D + V +L+++
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQVYELLEK---- 227
Query: 635 DALDFRLKLGSG--DSVAEMVESLRVGYLCTADSPGKRPTMQQV 676
D+R++ G + V E++ + C +P RP+ ++
Sbjct: 228 ---DYRMERPEGCPEKVYELMRA------CWQWNPSDRPSFAEI 262
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 43/214 (20%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 77
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E + V
Sbjct: 78 REPPFYIITEFMTYGNLLDYLRECNRQEVSA--------------------------VVL 111
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG-----VKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 112 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGAK 171
Query: 589 SENETCGPE----------SDVYCFGVILMELLT 612
+ PE SDV+ FGV+L E+ T
Sbjct: 172 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 205
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 82/214 (38%), Gaps = 43/214 (20%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 79
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ EFM G+L +L E E + V
Sbjct: 80 REPPFYIITEFMTYGNLLDYLRECNRQEVSA--------------------------VVL 113
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 114 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAK 173
Query: 589 SENETCGPE----------SDVYCFGVILMELLT 612
+ PE SDV+ FGV+L E+ T
Sbjct: 174 FPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 207
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 97/257 (37%), Gaps = 59/257 (22%)
Query: 391 KPLVNYLTFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPG--ELHVAIK 437
+ V+ T++D F KE ++ G G V R LP E+ VAIK
Sbjct: 20 RTFVDPHTYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIK 79
Query: 438 VLD-NAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
L D + + + HPN++ L G K +++ E+M NG L +L +
Sbjct: 80 TLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRK 139
Query: 497 LPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGH 556
H + V R G+A G+ YL +G H
Sbjct: 140 ------------------------HDAQFTVIQLVGMLR---GIASGMKYLSDMGYVHRD 172
Query: 557 LVTSSILLAESLEPKIAGFGLRNI-------GVKNVGERSENETCGPE----------SD 599
L +IL+ +L K++ FGL + G + PE SD
Sbjct: 173 LAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASD 232
Query: 600 VYCFGVILMELLT-GKR 615
V+ +G++L E+++ G+R
Sbjct: 233 VWSYGIVLWEVMSYGER 249
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 94/250 (37%), Gaps = 59/250 (23%)
Query: 398 TFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPG--ELHVAIKVLD-NAK 443
T++D F KE ++ G G V R LP E+ VAIK L
Sbjct: 27 TYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYT 86
Query: 444 GIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPN 503
D + + + HPN++ L G K +++ E+M NG L +L +
Sbjct: 87 EKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRK------- 139
Query: 504 VEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSIL 563
H + V R G+A G+ YL +G H L +IL
Sbjct: 140 -----------------HDAQFTVIQLVGMLR---GIASGMKYLSDMGYVHRDLAARNIL 179
Query: 564 LAESLEPKIAGFGLRNI-------GVKNVGERSENETCGPE----------SDVYCFGVI 606
+ +L K++ FGL + G + PE SDV+ +G++
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 239
Query: 607 LMELLT-GKR 615
L E+++ G+R
Sbjct: 240 LWEVMSYGER 249
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 85/225 (37%), Gaps = 44/225 (19%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPL 468
L EG G V+ A ++ VA+K L + D + L+ L+H +++
Sbjct: 23 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 469 AGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGA-----GSHIS 523
G C G +++ E+M +GDL+++L H P A G
Sbjct: 83 YGVCGDGDPLIMVFEYMKHGDLNKFLRA-----------------HGPDAMILVDGQPRQ 125
Query: 524 SPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVK 583
+ + IA +A G+ YL H L T + L+ +L KI FG+
Sbjct: 126 AKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYS 185
Query: 584 NVGERSENETCGP----------------ESDVYCFGVILMELLT 612
R T P ESDV+ FGVIL E+ T
Sbjct: 186 TDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFT 230
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 94/250 (37%), Gaps = 59/250 (23%)
Query: 398 TFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPG--ELHVAIKVLD-NAK 443
T++D F KE ++ G G V R LP E+ VAIK L
Sbjct: 25 TYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYT 84
Query: 444 GIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPN 503
D + + + HPN++ L G K +++ E+M NG L +L +
Sbjct: 85 EKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRK------- 137
Query: 504 VEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSIL 563
H + V R G+A G+ YL +G H L +IL
Sbjct: 138 -----------------HDAQFTVIQLVGMLR---GIASGMKYLSDMGYVHRDLAARNIL 177
Query: 564 LAESLEPKIAGFGLRNI-------GVKNVGERSENETCGPE----------SDVYCFGVI 606
+ +L K++ FGL + G + PE SDV+ +G++
Sbjct: 178 INSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 237
Query: 607 LMELLT-GKR 615
L E+++ G+R
Sbjct: 238 LWEVMSYGER 247
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 122/305 (40%), Gaps = 64/305 (20%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRL- 460
FGK L G G V A G L VA+K+L + D +A + EL +
Sbjct: 41 QFGKT--LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA--LMSELKIMS 96
Query: 461 ---KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
+H N++ L G C G LV+ E+ GDL +L + + ED
Sbjct: 97 HLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKED----------- 145
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + + ++ ++ VA+G+A+L H + ++LL KI FGL
Sbjct: 146 -GRPLELRDLLHFSSQ------VAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGL 198
Query: 578 -RNI-----GVKNVGERSENETCGPE----------SDVYCFGVILMEL----LTGKRGT 617
R+I + R + PE SDV+ +G++L E+ L G
Sbjct: 199 ARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI 258
Query: 618 DDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
K+ KLVK+G F K ++ ++++ C A P RPT QQ+
Sbjct: 259 LVNSKFY-KLVKDGYQMAQPAFAPK-----NIYSIMQA------CWALEPTHRPTFQQIC 306
Query: 678 GLLKD 682
L++
Sbjct: 307 SFLQE 311
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 19/98 (19%)
Query: 536 IAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENETCG 595
IA ARG+ YLH H L +++I L E KI FGL + + G + G
Sbjct: 113 IARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSG 172
Query: 596 ------PE-------------SDVYCFGVILMELLTGK 614
PE SDVY FG++L EL+TG+
Sbjct: 173 SILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 210
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 84/222 (37%), Gaps = 53/222 (23%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE---LSRLKHPNLLPLAGY 471
+ G G VY+ G+ VA+K+L N A +E L + +H N+L GY
Sbjct: 36 IGSGSFGTVYKGKWHGD--VAVKML-NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 92
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
+ +V ++ L+ LH + T K +
Sbjct: 93 STKPQLAIVT-QWCEGSSLYHHLHIIET---------------------------KFEMI 124
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
IA A+G+ YLH H L +++I L E L KI FGL + G
Sbjct: 125 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFE 184
Query: 592 ETCG------PE-------------SDVYCFGVILMELLTGK 614
+ G PE SDVY FG++L EL+TG+
Sbjct: 185 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 226
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 21/195 (10%)
Query: 56 PSTPIRELNLSSRNLSGIISWKFLRNMSELHSIDLSNN--SLKGSVPGWFWSTQSLTQVN 113
PS+ R L L S L + F + +++L + LS+N S KG + T SL ++
Sbjct: 27 PSSATR-LELESNKLQSLPHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84
Query: 114 LSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFS------KLMVLDVSNN 167
LS F G I + + F ++ L + +NL ++S+FS L+ LD+S+
Sbjct: 85 LS---FNGVI-----TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 168 DLRILPSGFAN-LSKLRHLDISSCKISGNIKPVSF--LHSLKYLDVSNNSMNGTFPSDFP 224
R+ +G N LS L L ++ N P F L +L +LD+S + P+ F
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 225 PLSGVKFLNISLNKF 239
LS ++ LN+S N F
Sbjct: 197 SLSSLQVLNMSHNNF 211
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 17/113 (15%)
Query: 82 MSELHSIDLSNNSLKGS-VPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVL 140
+S L + ++ NS + + +P F ++LT ++LS+ + PT+ N S+QVL
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ---LSPTAFNS-LSSLQVL 204
Query: 141 NLSSNRFTNL--VKLSQFSKLMVLDVSNN--------DLRILPS--GFANLSK 181
N+S N F +L + L VLD S N +L+ PS F NL++
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 89/226 (39%), Gaps = 53/226 (23%)
Query: 412 ESLLAEGRCGPVYRAVLPGE----LHVAIKVLDNAKGIDHDDAVAMFDELSR-LKHPNLL 466
+ ++ +G G VY + + AIK L + +A L R L HPN+L
Sbjct: 26 DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVL 85
Query: 467 PLAGYCIAGKEKL--VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISS 524
L G + E L VLL +M +GDL +++ P P V+D +
Sbjct: 86 ALIGIMLP-PEGLPHVLLPYMCHGDLLQFIRS-PQRNPTVKDLIS--------------- 128
Query: 525 PEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVK 583
+ VARG+ YL H L + +L ES K+A FGL R+I +
Sbjct: 129 -----------FGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDR 177
Query: 584 NVG-----------------ERSENETCGPESDVYCFGVILMELLT 612
E + +SDV+ FGV+L ELLT
Sbjct: 178 EYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLT 223
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 122/305 (40%), Gaps = 64/305 (20%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRL- 460
FGK L G G V A G L VA+K+L + D +A + EL +
Sbjct: 49 QFGKT--LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA--LMSELKIMS 104
Query: 461 ---KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
+H N++ L G C G LV+ E+ GDL +L + + ED
Sbjct: 105 HLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKED----------- 153
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
G + + ++ ++ VA+G+A+L H + ++LL KI FGL
Sbjct: 154 -GRPLELRDLLHFSSQ------VAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGL 206
Query: 578 -RNI-----GVKNVGERSENETCGPE----------SDVYCFGVILMEL----LTGKRGT 617
R+I + R + PE SDV+ +G++L E+ L G
Sbjct: 207 ARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI 266
Query: 618 DDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
K+ KLVK+G F K ++ ++++ C A P RPT QQ+
Sbjct: 267 LVNSKFY-KLVKDGYQMAQPAFAPK-----NIYSIMQA------CWALEPTHRPTFQQIC 314
Query: 678 GLLKD 682
L++
Sbjct: 315 SFLQE 319
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 84/227 (37%), Gaps = 50/227 (22%)
Query: 412 ESLLAEGRCGPVY--RAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELS---RLKHPNLL 466
E ++ G G V R +PG+ V + + G E S + HPN++
Sbjct: 54 EKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNII 113
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPE 526
L G G+ +++ E+M NG L +L +H
Sbjct: 114 RLEGVVTRGRLAMIVTEYMENGSLDTFLR------------------------THDGQFT 149
Query: 527 KTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI------ 580
V R GV G+ YL +G H L ++L+ +L K++ FGL +
Sbjct: 150 IMQLVGMLR---GVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPD 206
Query: 581 -GVKNVGERSENETCGPE----------SDVYCFGVILMELLT-GKR 615
G + PE SDV+ FGV++ E+L G+R
Sbjct: 207 AAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGER 253
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 84/222 (37%), Gaps = 53/222 (23%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE---LSRLKHPNLLPLAGY 471
+ G G VY+ G+ VA+K+L N A +E L + +H N+L GY
Sbjct: 44 IGSGSFGTVYKGKWHGD--VAVKML-NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 100
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
+ +V ++ L+ LH + T K +
Sbjct: 101 STKPQLAIVT-QWCEGSSLYHHLHIIET---------------------------KFEMI 132
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
IA A+G+ YLH H L +++I L E L KI FGL + G
Sbjct: 133 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFE 192
Query: 592 ETCG------PE-------------SDVYCFGVILMELLTGK 614
+ G PE SDVY FG++L EL+TG+
Sbjct: 193 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 234
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 124/308 (40%), Gaps = 66/308 (21%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRL- 460
FGK L G G V A G L VA+K+L + D +A + EL +
Sbjct: 49 QFGKT--LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA--LMSELKIMS 104
Query: 461 ---KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
+H N++ L G C G LV+ E+ GDL +L + + P
Sbjct: 105 HLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRR-----------KSRVLETDPA 153
Query: 518 ---AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
A S +S+ + ++ ++ VA+G+A+L H + ++LL KI
Sbjct: 154 FAIANSTLSTRDLLHFSSQ------VAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGD 207
Query: 575 FGL-RNI-----GVKNVGERSENETCGPE----------SDVYCFGVILMEL----LTGK 614
FGL R+I + R + PE SDV+ +G++L E+ L
Sbjct: 208 FGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPY 267
Query: 615 RGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQ 674
G K+ KLVK+G F K ++ ++++ C A P RPT Q
Sbjct: 268 PGILVNSKFY-KLVKDGYQMAQPAFAPK-----NIYSIMQA------CWALEPTHRPTFQ 315
Query: 675 QVLGLLKD 682
Q+ L++
Sbjct: 316 QICSFLQE 323
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 84/222 (37%), Gaps = 53/222 (23%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE---LSRLKHPNLLPLAGY 471
+ G G VY+ G+ VA+K+L N A +E L + +H N+L GY
Sbjct: 16 IGSGSFGTVYKGKWHGD--VAVKML-NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 72
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
+ +V ++ L+ LH + T K +
Sbjct: 73 STKPQLAIVT-QWCEGSSLYHHLHIIET---------------------------KFEMI 104
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
IA A+G+ YLH H L +++I L E L KI FGL + G
Sbjct: 105 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFE 164
Query: 592 ETCG------PE-------------SDVYCFGVILMELLTGK 614
+ G PE SDVY FG++L EL+TG+
Sbjct: 165 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 206
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 84/227 (37%), Gaps = 50/227 (22%)
Query: 412 ESLLAEGRCGPVY--RAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELS---RLKHPNLL 466
E ++ G G V R +PG+ V + + G E S + HPN++
Sbjct: 54 EKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNII 113
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPE 526
L G G+ +++ E+M NG L +L +H
Sbjct: 114 RLEGVVTRGRLAMIVTEYMENGSLDTFLR------------------------THDGQFT 149
Query: 527 KTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI------ 580
V R GV G+ YL +G H L ++L+ +L K++ FGL +
Sbjct: 150 IMQLVGMLR---GVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPD 206
Query: 581 -GVKNVGERSENETCGPE----------SDVYCFGVILMELLT-GKR 615
G + PE SDV+ FGV++ E+L G+R
Sbjct: 207 AAXTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGER 253
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 121/314 (38%), Gaps = 69/314 (21%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRL- 460
FGK L G G V A G L VA+K+L + D +A + EL +
Sbjct: 34 QFGKT--LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA--LMSELKIMS 89
Query: 461 ---KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHEL------PTGEPNVEDWSTDT 511
+H N++ L G C G LV+ E+ GDL +L P+ P + D
Sbjct: 90 HLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSLAPGQDPEGLDK 149
Query: 512 WDHHPGAGS---HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESL 568
D P H SS VA+G+A+L H + ++LL
Sbjct: 150 EDGRPLELRDLLHFSSQ--------------VAQGMAFLASKNCIHRDVAARNVLLTNGH 195
Query: 569 EPKIAGFGL-RNI-----GVKNVGERSENETCGPE----------SDVYCFGVILMEL-- 610
KI FGL R+I + R + PE SDV+ +G++L E+
Sbjct: 196 VAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFS 255
Query: 611 --LTGKRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPG 668
L G K+ KLVK+G F K ++ ++++ C A P
Sbjct: 256 LGLNPYPGILVNSKFY-KLVKDGYQMAQPAFAPK-----NIYSIMQA------CWALEPT 303
Query: 669 KRPTMQQVLGLLKD 682
RPT QQ+ L++
Sbjct: 304 HRPTFQQICSFLQE 317
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 50/227 (22%)
Query: 412 ESLLAEGRCGPVY--RAVLPG--ELHVAIKVLD-NAKGIDHDDAVAMFDELSRLKHPNLL 466
+ ++ G G V R LP E+ VAIK L D + + + HPN++
Sbjct: 21 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNII 80
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPE 526
L G K +++ E+M NG L +L + H +
Sbjct: 81 RLEGVVTKSKPVMIVTEYMENGSLDSFLRK------------------------HDAQFT 116
Query: 527 KTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI------ 580
V R G+A G+ YL +G H L +IL+ +L K++ FGL +
Sbjct: 117 VIQLVGMLR---GIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPE 173
Query: 581 -GVKNVGERSENETCGPE----------SDVYCFGVILMELLT-GKR 615
G + PE SDV+ +G++L E+++ G+R
Sbjct: 174 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER 220
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 81 NMSELHSIDLSNN--SLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQ 138
++ L +DLS N S KG + T SL ++LS F G I + + F ++
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVI-----TMSSNFLGLE 396
Query: 139 VLNLSSNRFTNLVKLSQFS------KLMVLDVSNNDLRILPSGFAN-LSKLRHLDISSCK 191
L + +NL ++S+FS L+ LD+S+ R+ +G N LS L L ++
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 192 ISGNIKPVSF--LHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKF 239
N P F L +L +LD+S + P+ F LS ++ LN+S N F
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 61 RELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFG 120
+ L+LS L + S+ F + EL +DLS ++ G + S L+ + L+ N
Sbjct: 31 KNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 121 GTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQF-----SKLMVLDVSNNDLRI--LP 173
G F + L TNL L F L L+V++N ++ LP
Sbjct: 90 SLAL-------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 174 SGFANLSKLRHLDISSCKISG 194
F+NL+ L HLD+SS KI
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS 163
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 17/113 (15%)
Query: 82 MSELHSIDLSNNSLKGS-VPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVL 140
+S L + ++ NS + + +P F ++LT ++LS+ + PT+ N S+QVL
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ---LSPTAFNS-LSSLQVL 499
Query: 141 NLSSNRFTNLVKLSQ--FSKLMVLDVSNN--------DLRILPS--GFANLSK 181
N+S N F +L + L VLD S N +L+ PS F NL++
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 15/160 (9%)
Query: 88 IDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRF 147
+DL NSLK G F SLTQ+ L N+ P S+ LNLS+N+
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL----PNGVFNKLTSLTYLNLSTNQL 88
Query: 148 TNLVK--LSQFSKLMVLDVSNNDLRILPSG-FANLSKLRHLDISSCKISGNIKPV-SFLH 203
+L + ++L L ++ N L+ LP G F L++L+ L + ++ V L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 204 SLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFTGFV 243
SL+Y+ + +N + T P G+++L+ +NK +G V
Sbjct: 149 SLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVV 181
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 88/227 (38%), Gaps = 50/227 (22%)
Query: 412 ESLLAEGRCGPVY--RAVLPG--ELHVAIKVLD-NAKGIDHDDAVAMFDELSRLKHPNLL 466
+ ++ G G V R LP E+ VAIK L D + + + HPN++
Sbjct: 38 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNII 97
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPE 526
L G K +++ E+M NG L +L + H +
Sbjct: 98 RLEGVVTKSKPVMIVTEYMENGSLDSFLRK------------------------HDAQFT 133
Query: 527 KTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI------ 580
V R G+A G+ YL +G H L +IL+ +L K++ FGL +
Sbjct: 134 VIQLVGMLR---GIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPE 190
Query: 581 -GVKNVGERSENETCGPE----------SDVYCFGVILMELLT-GKR 615
G + PE SDV+ +G++L E+++ G+R
Sbjct: 191 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER 237
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 43/214 (20%)
Query: 415 LAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L G+ G VY V L VA+K L ++ ++ + + +KHPNL+ L G C
Sbjct: 40 LGGGQYGEVYVGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 98
Query: 474 AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTR 533
++ E+M G+L +L E + E+ V
Sbjct: 99 LEPPFYIVTEYMPYGNLLDYLRE--------------------------CNREEVTAVVL 132
Query: 534 HRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----GVKNVGER 588
+A ++ + YL H L + L+ E+ K+A FGL + + G +
Sbjct: 133 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGAK 192
Query: 589 SENETCGPE----------SDVYCFGVILMELLT 612
+ PE SDV+ FGV+L E+ T
Sbjct: 193 FPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIAT 226
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 92/237 (38%), Gaps = 56/237 (23%)
Query: 406 TSHFGKESLLAEGRCGPVYRAVL--PG--ELHVAIKVLDNAKGIDHDDAVAMFDELS--- 458
S+ E ++ G G V R L PG E VAIK L G E S
Sbjct: 13 VSYVKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKG--GYTERQRREFLSEASIMG 70
Query: 459 RLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGA 518
+ +HPN++ L G ++L EFM NG L +L L G+ V
Sbjct: 71 QFEHPNIIRLEGVVTNSMPVMILTEFMENGALDSFLR-LNDGQFTV-------------- 115
Query: 519 GSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLR 578
+ + G+A G+ YL + H L +IL+ +L K++ FGL
Sbjct: 116 ------------IQLVGMLRGIASGMRYLAEMSYVHRDLAARNILVNSNLVCKVSDFGLS 163
Query: 579 NIGVKNVGERSENETCG---------PE----------SDVYCFGVILMELLT-GKR 615
+N + + + G PE SD + +G+++ E+++ G+R
Sbjct: 164 RFLEENSSDPTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIVMWEVMSFGER 220
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 101/258 (39%), Gaps = 61/258 (23%)
Query: 391 KPLVNYLTFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPG--ELHVAIK 437
+ V+ TF+D A F KE ++ G G V R +PG E+ VAIK
Sbjct: 4 RTFVDPFTFEDPNQAVREFAKEIDASCIKIEKVIGVGEFGEVCSGRLKVPGKREICVAIK 63
Query: 438 VLDNAKGIDHD--DAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLH 495
L A D D ++ + + HPN++ L G K +++ E+M NG L +L
Sbjct: 64 TL-KAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITEYMENGSLDAFLR 122
Query: 496 ELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHG 555
+ + + + + G+ G+ YL + + H
Sbjct: 123 K---------------------------NDGRFTVIQLVGMLRGIGSGMKYLSDMSAVHR 155
Query: 556 HLVTSSILLAESLEPKIAGFGLRNI-------GVKNVGERSENETCGPE----------S 598
L +IL+ +L K++ FG+ + G + PE S
Sbjct: 156 DLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSAS 215
Query: 599 DVYCFGVILMELLT-GKR 615
DV+ +G+++ E+++ G+R
Sbjct: 216 DVWSYGIVMWEVMSYGER 233
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 81 NMSELHSIDLSNN--SLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQ 138
++ L +DLS N S KG + T SL ++LS F G I + + F ++
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS---FNGVI-----TMSSNFLGLE 420
Query: 139 VLNLSSNRFTNLVKLSQFS------KLMVLDVSNNDLRILPSGFAN-LSKLRHLDISSCK 191
L + +NL ++S+FS L+ LD+S+ R+ +G N LS L L ++
Sbjct: 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 480
Query: 192 ISGNIKPVSF--LHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKF 239
N P F L +L +LD+S + P+ F LS ++ LN+S N F
Sbjct: 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 61 RELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFG 120
+ L+LS L + S+ F + EL +DLS ++ G + S L+ + L+ N
Sbjct: 55 KNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113
Query: 121 GTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQF-----SKLMVLDVSNNDLRI--LP 173
G F + L TNL L F L L+V++N ++ LP
Sbjct: 114 SLAL-------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 166
Query: 174 SGFANLSKLRHLDISSCKI 192
F+NL+ L HLD+SS KI
Sbjct: 167 EYFSNLTNLEHLDLSSNKI 185
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 82 MSELHSIDLSNNSLKGS-VPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVL 140
+S L + ++ NS + + +P F ++LT ++LS+ + PT+ N S+QVL
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ---LSPTAFNS-LSSLQVL 523
Query: 141 NLSSNRFTNLVKLSQ--FSKLMVLDVSNNDLRILPSGFANL----SKLRHLDISSCKISG 194
N+S N F +L + L VLD S N I+ S L S L L+++ +
Sbjct: 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLN--HIMTSKKQELQHFPSSLAFLNLTQNDFAC 581
Query: 195 NIKPVSFLHSLK---YLDVSNNSMNGTFPSD 222
+ SFL +K L V M PSD
Sbjct: 582 TCEHQSFLQWIKDQRQLLVEVERMECATPSD 612
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 59/250 (23%)
Query: 398 TFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPG--ELHVAIKVLD-NAK 443
T++D A F KE ++ G G V R LPG EL VAIK L
Sbjct: 4 TYEDPNQAVHEFAKEIEASCITIERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYT 63
Query: 444 GIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPN 503
D + + + HPN++ L G K +++ E+M NG L +L +
Sbjct: 64 EKQRRDFLGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKK------- 116
Query: 504 VEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSIL 563
+ G + I V R G++ G+ YL +G H L +IL
Sbjct: 117 -----------NDGQFTVI------QLVGMLR---GISAGMKYLSDMGYVHRDLAARNIL 156
Query: 564 LAESLEPKIAGFGLRNI-------GVKNVGERSENETCGPE----------SDVYCFGVI 606
+ +L K++ FGL + G + PE SDV+ +G++
Sbjct: 157 INSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAFRKFTSASDVWSYGIV 216
Query: 607 LMELLT-GKR 615
+ E+++ G+R
Sbjct: 217 MWEVVSYGER 226
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 123/305 (40%), Gaps = 60/305 (19%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRL- 460
FGK L G G V A G L VA+K+L + D +A + EL +
Sbjct: 49 QFGKT--LGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA--LMSELKIMS 104
Query: 461 ---KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
+H N++ L G C G LV+ E+ GDL +L + +T
Sbjct: 105 HLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRR--------KSRVLETDPAFAI 156
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
A S S+ + ++ ++ VA+G+A+L H + ++LL KI FGL
Sbjct: 157 ANSTASTRDLLHFSSQ------VAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGL 210
Query: 578 -RNI-----GVKNVGERSENETCGPE----------SDVYCFGVILMEL----LTGKRGT 617
R+I + R + PE SDV+ +G++L E+ L G
Sbjct: 211 ARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI 270
Query: 618 DDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
K+ KLVK+G F K ++ ++++ C A P RPT QQ+
Sbjct: 271 LVNSKFY-KLVKDGYQMAQPAFAPK-----NIYSIMQA------CWALEPTHRPTFQQIC 318
Query: 678 GLLKD 682
L++
Sbjct: 319 SFLQE 323
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 83/222 (37%), Gaps = 53/222 (23%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE---LSRLKHPNLLPLAGY 471
+ G G VY+ G+ VA+K+L N A +E L + +H N+L GY
Sbjct: 32 IGSGSFGTVYKGKWHGD--VAVKML-NVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 88
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
A + +V ++ L+ LH +S K
Sbjct: 89 STAPQLAIVT-QWCEGSSLYHHLH---------------------------ASETKFEMK 120
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
IA ARG+ YLH H L +++I L E KI FGL + G
Sbjct: 121 KLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFE 180
Query: 592 ETCG------PE-------------SDVYCFGVILMELLTGK 614
+ G PE SDVY FG++L EL+TG+
Sbjct: 181 QLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 222
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 93/250 (37%), Gaps = 59/250 (23%)
Query: 398 TFKDLIAATSHFGKE---------SLLAEGRCGPVY--RAVLPG--ELHVAIKVLD-NAK 443
T++D F KE ++ G G V R LP E+ VAIK L
Sbjct: 27 TYEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYT 86
Query: 444 GIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPN 503
D + + + HPN++ L G K +++ E M NG L +L +
Sbjct: 87 EKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRK------- 139
Query: 504 VEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSIL 563
H + V R G+A G+ YL +G H L +IL
Sbjct: 140 -----------------HDAQFTVIQLVGMLR---GIASGMKYLSDMGYVHRDLAARNIL 179
Query: 564 LAESLEPKIAGFGLRNI-------GVKNVGERSENETCGPE----------SDVYCFGVI 606
+ +L K++ FGL + G + PE SDV+ +G++
Sbjct: 180 INSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 239
Query: 607 LMELLT-GKR 615
L E+++ G+R
Sbjct: 240 LWEVMSYGER 249
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 60/222 (27%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE----LSRLKHPNLLPLAG 470
L G+ G V+ VA+K L +V F E + L+H L+ L
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTM-----SVQAFLEEANLMKTLQHDKLVRL-- 73
Query: 471 YCIAGKEK--LVLLEFMANGDLHRWLHELPTGE---PNVEDWSTDTWDHHPGAGSHISSP 525
Y + +E+ ++ E+MA G L +L G+ P + D+S
Sbjct: 74 YAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQ--------------- 118
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN- 584
+A G+AY+ H L +++L++ESL KIA FGL + N
Sbjct: 119 --------------IAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE 164
Query: 585 ----VGERSENETCGPE----------SDVYCFGVILMELLT 612
G + + PE SDV+ FG++L E++T
Sbjct: 165 YTAREGAKFPIKWTAPEAINFGCFTIKSDVWSFGILLYEIVT 206
>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
pdb|3MPA|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI GFGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILGFGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 60/222 (27%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE----LSRLKHPNLLPLAG 470
L G+ G V+ VA+K L +V F E + L+H L+ L
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVKTLKPGTM-----SVQAFLEEANLMKTLQHDKLVRL-- 72
Query: 471 YCIAGKEK--LVLLEFMANGDLHRWLHELPTGE---PNVEDWSTDTWDHHPGAGSHISSP 525
Y + KE+ ++ EFMA G L +L G+ P + D+S
Sbjct: 73 YAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQ--------------- 117
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN- 584
+A G+AY+ H L +++L++ESL KIA FGL + N
Sbjct: 118 --------------IAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE 163
Query: 585 ----VGERSENETCGPE----------SDVYCFGVILMELLT 612
G + + PE S+V+ FG++L E++T
Sbjct: 164 YTAREGAKFPIKWTAPEAINFGCFTIKSNVWSFGILLYEIVT 205
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 124/301 (41%), Gaps = 68/301 (22%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E ++ G G V +A + VAIK +++ + + +LSR+ HPN++ L G
Sbjct: 13 EEVVGRGAFGVVCKAKWRAK-DVAIKQIESES--ERKAFIVELRQLSRVNHPNIVKLYGA 69
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
C+ +++E+ G L+ LH EP + ++ +W
Sbjct: 70 CL--NPVCLVMEYAEGGSLYNVLH---GAEPL----------------PYYTAAHAMSW- 107
Query: 532 TRHRIAIGVARGLAYLHHV---GSTHGHLVTSSILL-AESLEPKIAGFG----LRNIGVK 583
+ ++G+AYLH + H L ++LL A KI FG ++
Sbjct: 108 -----CLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTN 162
Query: 584 NVG-------ERSENETCGPESDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDA 636
N G E E + DV+ +G+IL E++T ++ D+ GG A
Sbjct: 163 NKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE------------IGGPA 210
Query: 637 LDFRLKLGSG------DSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIR---PSA 687
+ +G ++ + +ESL C + P +RP+M++++ ++ + P A
Sbjct: 211 FRIMWAVHNGTRPPLIKNLPKPIESLMTR--CWSKDPSQRPSMEEIVKIMTHLMRYFPGA 268
Query: 688 D 688
D
Sbjct: 269 D 269
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 124/301 (41%), Gaps = 68/301 (22%)
Query: 412 ESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGY 471
E ++ G G V +A + VAIK +++ + + +LSR+ HPN++ L G
Sbjct: 14 EEVVGRGAFGVVCKAKWRAK-DVAIKQIESES--ERKAFIVELRQLSRVNHPNIVKLYGA 70
Query: 472 CIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
C+ +++E+ G L+ LH EP + ++ +W
Sbjct: 71 CL--NPVCLVMEYAEGGSLYNVLH---GAEPL----------------PYYTAAHAMSW- 108
Query: 532 TRHRIAIGVARGLAYLHHV---GSTHGHLVTSSILL-AESLEPKIAGFG----LRNIGVK 583
+ ++G+AYLH + H L ++LL A KI FG ++
Sbjct: 109 -----CLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTN 163
Query: 584 NVG-------ERSENETCGPESDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGGDA 636
N G E E + DV+ +G+IL E++T ++ D+ GG A
Sbjct: 164 NKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE------------IGGPA 211
Query: 637 LDFRLKLGSG------DSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIR---PSA 687
+ +G ++ + +ESL C + P +RP+M++++ ++ + P A
Sbjct: 212 FRIMWAVHNGTRPPLIKNLPKPIESLMT--RCWSKDPSQRPSMEEIVKIMTHLMRYFPGA 269
Query: 688 D 688
D
Sbjct: 270 D 270
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 19/98 (19%)
Query: 536 IAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENETCG 595
IA ARG+ YLH H L +++I L E KI FGL + G + G
Sbjct: 125 IARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSG 184
Query: 596 ------PE-------------SDVYCFGVILMELLTGK 614
PE SDVY FG++L EL+TG+
Sbjct: 185 SILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQ 222
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 92/234 (39%), Gaps = 41/234 (17%)
Query: 408 HFGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKGIDHDDAVAMFDELSRL- 460
FGK +L G G V A G + VA+K+L + D + A+ EL +
Sbjct: 48 EFGK--VLGSGAFGKVMNATAYGISKTGVSIQVAVKML--KEKADSSEREALMSELKMMT 103
Query: 461 ---KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
H N++ L G C ++ E+ GDL +L E +S D ++
Sbjct: 104 QLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLR------SKREKFSEDEIEYENQ 157
Query: 518 AGSHISSPEKTNWVTRHRI---AIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
+ E N +T + A VA+G+ +L H L ++L+ KI
Sbjct: 158 --KRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICD 215
Query: 575 FGL-RNI-----GVKNVGERSENETCGPE----------SDVYCFGVILMELLT 612
FGL R+I V R + PE SDV+ +G++L E+ +
Sbjct: 216 FGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFS 269
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 87/227 (38%), Gaps = 50/227 (22%)
Query: 412 ESLLAEGRCGPVY--RAVLPG--ELHVAIKVLD-NAKGIDHDDAVAMFDELSRLKHPNLL 466
+ ++ G G V R LP E+ VAIK L D + + + HPN++
Sbjct: 21 DKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNII 80
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPE 526
L G K +++ E M NG L +L + H +
Sbjct: 81 RLEGVVTKSKPVMIVTEXMENGSLDSFLRK------------------------HDAQFT 116
Query: 527 KTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI------ 580
V R G+A G+ YL +G H L +IL+ +L K++ FGL +
Sbjct: 117 VIQLVGMLR---GIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPE 173
Query: 581 -GVKNVGERSENETCGPE----------SDVYCFGVILMELLT-GKR 615
G + PE SDV+ +G++L E+++ G+R
Sbjct: 174 AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGER 220
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 19/169 (11%)
Query: 81 NMSELHSIDLSNN--SLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQ 138
++ L +DLS N S KG + T SL ++LS F G I + + F ++
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVI-----TMSSNFLGLE 396
Query: 139 VLNLSSNRFTNLVKLSQFS------KLMVLDVSNNDLRILPSG-FANLSKLRHLDISSCK 191
L + +NL ++S+FS L+ LD+S+ R+ +G F LS L L ++
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 192 ISGNIKPVSF--LHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNK 238
N P F L +L +LD+S + P+ F LS ++ LN++ N+
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 135 PSVQVLNLSSN--RFTNLVKLSQF--SKLMVLDVSNNDLRILPSGFANLSKLRHLDI--S 188
PS++ L+LS N F S F + L LD+S N + + S F L +L HLD S
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 189 SCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKF 239
+ K L +L YLD+S+ F F LS ++ L ++ N F
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 61 RELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFG 120
+ L+LS L + S+ F + EL +DLS ++ G + S L+ + L+ N
Sbjct: 31 KNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 121 GTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQF-----SKLMVLDVSNNDLRI--LP 173
G F + L TNL L F L L+V++N ++ LP
Sbjct: 90 SLAL-------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 174 SGFANLSKLRHLDISSCKI 192
F+NL+ L HLD+SS KI
Sbjct: 143 EYFSNLTNLEHLDLSSNKI 161
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 52/229 (22%)
Query: 412 ESLLAEGRCGPVYRA--VLPG--ELHVAIKVLDNA-KGIDHDDAVAMFDELSRLKHPNLL 466
E ++ G G V LPG E+ VAIK L + D ++ + + HPN++
Sbjct: 12 EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVI 71
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPE 526
L G +++ EFM NG L +L + G+ V
Sbjct: 72 HLEGVVTKSTPVMIITEFMENGSLDSFLRQ-NDGQFTV---------------------- 108
Query: 527 KTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVG 586
+ + G+A G+ YL + H L +IL+ +L K++ FGL +
Sbjct: 109 ----IQLVGMLRGIAAGMKYLADMNYVHRALAARNILVNSNLVCKVSDFGLSRFLEDDTS 164
Query: 587 ERSENETCG---------PE----------SDVYCFGVILMELLT-GKR 615
+ + G PE SDV+ +G+++ E+++ G+R
Sbjct: 165 DPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGER 213
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++EF+ G L
Sbjct: 45 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYGSLR 104
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L + H HI + T+ + +G+ YL
Sbjct: 105 EYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYLGTKR 137
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 138 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESLTESK 196
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 197 FSVASDVWSFGVVLYELFT 215
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 43/213 (20%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
+ G+ G V+ + VAIK + + DD + + + +L HP L+ L G C+
Sbjct: 35 IGSGQFGLVHLGYWLNKDKVAIKTIKEGS-MSEDDFIEEAEVMMKLSHPKLVQLYGVCLE 93
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
++ EFM +G L +L + + E T
Sbjct: 94 QAPICLVFEFMEHGCLSDYLR----------------------TQRGLFAAE-----TLL 126
Query: 535 RIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGERS 589
+ + V G+AYL H L + L+ E+ K++ FG+ + + G +
Sbjct: 127 GMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 186
Query: 590 ENETCGPE----------SDVYCFGVILMELLT 612
+ PE SDV+ FGV++ E+ +
Sbjct: 187 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 219
>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a)
Activating Mutant
Length = 367
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEI 200
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 201 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 255
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 256 KISSESARNYIQSL 269
>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-A
pdb|2FSM|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-B
Length = 367
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEI 200
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 201 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 255
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 256 KISSESARNYIQSL 269
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEI 200
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 201 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 255
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 256 KISSESARNYIQSL 269
>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex
With Dp802
Length = 354
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGXVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
pdb|3IPH|A Chain A, Crystal Structure Of P38 In Complex With A Biphenylamide
Inhibitor
Length = 360
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195
Length = 365
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 139 ILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEI 198
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 199 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 253
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 254 KISSESARNYIQSL 267
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 104/261 (39%), Gaps = 65/261 (24%)
Query: 405 ATSHFGKESLLAEGRCGPVYRAVLPGELHV-AIKVLDNAKGIDHDDAVAMFDELSR---- 459
A + E + +G G V++ L + V AIK L + + F E R
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 460 ---LKHPNLLPLAGYCIAGKEKLVLLEFMANGDL-HRWLHELPTGEPNVEDWSTDTWDHH 515
L HPN++ L Y + +++EF+ GDL HR L + H
Sbjct: 77 MSNLNHPNIVKL--YGLMHNPPRMVMEFVPCGDLYHRLLDKA-----------------H 117
Query: 516 PGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGS--THGHLVTSSILLAESLE---- 569
P W + R+ + +A G+ Y+ + H L + +I L +SL+
Sbjct: 118 P-----------IKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFL-QSLDENAP 165
Query: 570 --PKIAGFGLRNIGVKNVGERSEN------ETCGPE-------SDVYCFGVILMELLTGK 614
K+A FGL V +V N ET G E +D Y F +IL +LTG+
Sbjct: 166 VCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGE 225
Query: 615 RGTDDC----VKWVRKLVKEG 631
D+ +K++ + +EG
Sbjct: 226 GPFDEYSYGKIKFINMIREEG 246
>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine
pdb|4AA5|A Chain A, P38alpha Map Kinase Bound To Cmpd 33
Length = 365
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 139 ILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEI 198
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 199 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 253
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 254 KISSESARNYIQSL 267
>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376
pdb|3NNV|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp437
pdb|3NNW|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp802
Length = 354
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 15/154 (9%)
Query: 79 LRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQ 138
L+N++++ ++LS N LK QS+ ++L+ + S +Q
Sbjct: 87 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSN------LQ 138
Query: 139 VLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKISGNIKP 198
VL L N+ TN+ L+ + L L + NN + L + ANLSKL L KIS +I P
Sbjct: 139 VLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDL-TPLANLSKLTTLRADDNKIS-DISP 196
Query: 199 VSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
++ L +L + + +N + SD PL+ + L
Sbjct: 197 LASLPNLIEVHLKDNQI-----SDVSPLANLSNL 225
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 20/176 (11%)
Query: 58 TPIRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKG-SVPGWFWSTQSLTQVNLSK 116
T +++LN SS ++ + K L N++ L +D+S+N + SV + +SL N
Sbjct: 151 TSLQQLNFSSNQVTDL---KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN--- 204
Query: 117 NRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGF 176
N+ G ++ L+L+ N+ ++ L+ + L LD++NN + L +
Sbjct: 205 NQISDITPL------GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APL 257
Query: 177 ANLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
+ L+KL L + + +IS NI P++ L +L L+++ N + D P+S +K L
Sbjct: 258 SGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQL-----EDISPISNLKNL 307
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Query: 79 LRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQ 138
L N++ L + L NN + P + +L ++ LS N S+Q
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL------SGLTSLQ 154
Query: 139 VLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKISGNIKP 198
LN SSN+ T+L L+ + L LD+S+N + + S A L+ L L ++ +IS +I P
Sbjct: 155 QLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQIS-DITP 212
Query: 199 VSFLHSLKYLDVSNNSMN--GTFPS 221
+ L +L L ++ N + GT S
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLAS 237
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant
Length = 360
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant
Length = 360
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea
pdb|2BAK|A Chain A, P38alpha Map Kinase Bound To Mpaq
pdb|4A9Y|A Chain A, P38alpha Map Kinase Bound To Cmpd 8
pdb|4AA0|A Chain A, P38alpha Map Kinase Bound To Cmpd 2
pdb|4AA4|A Chain A, P38alpha Map Kinase Bound To Cmpd 22
pdb|4AAC|A Chain A, P38alpha Map Kinase Bound To Cmpd 29
Length = 365
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 139 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 198
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 199 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 253
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 254 KISSESARNYIQSL 267
>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
Length = 349
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 131 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 190
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 191 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 245
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 246 KISSESARNYIQSL 259
>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant
Length = 360
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|3HEC|A Chain A, P38 In Complex With Imatinib
pdb|3HEG|A Chain A, P38 In Complex With Sorafenib
Length = 348
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 130 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 189
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 190 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 244
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 245 KISSESARNYIQSL 258
>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|3MW1|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|2YIS|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase.
pdb|2YIW|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase
Length = 359
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 133 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 192
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 193 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 247
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 248 KISSESARNYIQSL 261
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 82/213 (38%), Gaps = 43/213 (20%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
+ G+ G V+ + VAIK + + +D + + + +L HP L+ L G C+
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
++ EFM +G L +L + + E T
Sbjct: 74 QAPICLVFEFMEHGCLSDYLR----------------------TQRGLFAAE-----TLL 106
Query: 535 RIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGERS 589
+ + V G+AYL H L + L+ E+ K++ FG+ + + G +
Sbjct: 107 GMCLDVCEGMAYLEEASVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 166
Query: 590 ENETCGPE----------SDVYCFGVILMELLT 612
+ PE SDV+ FGV++ E+ +
Sbjct: 167 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 199
>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase
Length = 362
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 136 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 195
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 196 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 250
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 251 KISSESARNYIQSL 264
>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With
Inhibitor Pg-892579
pdb|2GTN|A Chain A, Mutated Map Kinase P38 (mus Musculus) In Complex With
Inhbitor Pg-951717
Length = 348
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 130 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 189
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 190 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 244
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 245 KISSESARNYIQSL 258
>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A
Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE
COMPLEX IN Solution
Length = 359
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 139 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 198
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 199 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 253
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 254 KISSESARNYIQSL 267
>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In
Phosphorylated P38a And In Solution
Length = 370
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 144 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 203
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 204 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 258
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 259 KISSESARNYIQSL 272
>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955
Length = 350
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 132 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 191
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 192 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 246
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 247 KISSESARNYIQSL 260
>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
pdb|3E93|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
Length = 371
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 145 ILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEI 204
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 205 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 259
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 260 KISSESARNYIQSL 273
>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
Length = 360
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
pdb|1WBO|A Chain A, Fragment Based P38 Inhibitors
pdb|1W7H|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W82|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W83|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W84|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1ZZ2|A Chain A, Two Classes Of P38alpha Map Kinase Inhibitors Having A
Common Diphenylether Core But Exhibiting Divergent
Binding Modes
pdb|1WBN|A Chain A, Fragment Based P38 Inhibitors
pdb|1WBS|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBT|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-based Lead Generation.
pdb|1WBV|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBW|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1ZYJ|A Chain A, Human P38 Map Kinase In Complex With Inhibitor 1a
pdb|2ZAZ|A Chain A, Crystal Structure Of P38 In Complex With 4-Anilino
Quinoline Inhibitor
pdb|2ZB0|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|2ZB1|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|3HL7|A Chain A, Crystal Structure Of Human P38alpha Complexed With Sd-0006
pdb|3HLL|A Chain A, Crystal Structure Of Human P38alpha Complexed With
Ph-797804
pdb|3HP2|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyridinone Compound
pdb|3HP5|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyrimidopyridazinone Compound
pdb|3KF7|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Triazolopyrimidine Compound
pdb|3MGY|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3ROC|A Chain A, Crystal Structure Of Human P38 Alpha Complexed With A
Pyrimidinone Compound
pdb|3RIN|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|4E5B|A Chain A, Structure Of P38a Map Kinase Without Bog
pdb|4E6A|A Chain A, P38a-Pia23 Complex
pdb|4E6C|A Chain A, P38a-perifosine Complex
pdb|4E8A|A Chain A, The Crystal Structure Of P38a Map Kinase In Complex With
Pia24
Length = 360
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase
Length = 367
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 141 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 200
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 201 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 255
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 256 KISSESARNYIQSL 269
>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine
pdb|2YIX|A Chain A, Triazolopyridine Inhibitors Of P38
Length = 351
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 131 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 190
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 191 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 245
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 246 KISSESARNYIQSL 259
>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715
pdb|3ZSH|A Chain A, X-Ray Structure Of P38alpha Bound To Scio-469
pdb|3ZSI|A Chain A, X-Ray Structure Of P38alpha Bound To Vx-745
pdb|3ZS5|A Chain A, Structural Basis For Kinase Selectivity Of Three Clinical
P38alpha Inhibitors
Length = 362
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 136 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 195
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 196 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 250
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 251 KISSESARNYIQSL 264
>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex
pdb|2QD9|A Chain A, P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic
Scaffolds
pdb|2RG5|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11b
pdb|2RG6|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11j
pdb|3C5U|A Chain A, P38 Alpha Map Kinase Complexed With A Benzothiazole Based
Inhibitor
pdb|3BV2|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 30
pdb|3BV3|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 2
pdb|3BX5|A Chain A, P38 Alpha Map Kinase Complexed With Bms-640994
pdb|3L8X|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine
Based Inhibitor
pdb|3NWW|A Chain A, P38 Alpha Kinase Complexed With A
2-Aminothiazol-5-Yl-Pyrimidine Based Inhibitor
pdb|3MVL|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVL|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVM|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3MVM|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3OCG|A Chain A, P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based
Inhibitor
pdb|3S4Q|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Triazine Based
Inhibitor
Length = 366
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 140 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 199
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 200 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 254
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 255 KISSESARNYIQSL 268
>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48
pdb|3GCU|B Chain B, Human P38 Map Kinase In Complex With Rl48
pdb|3HV4|A Chain A, Human P38 Map Kinase In Complex With Rl51
pdb|3HV4|B Chain B, Human P38 Map Kinase In Complex With Rl51
pdb|3HV5|A Chain A, Human P38 Map Kinase In Complex With Rl24
pdb|3HV5|B Chain B, Human P38 Map Kinase In Complex With Rl24
pdb|3HV6|A Chain A, Human P38 Map Kinase In Complex With Rl39
pdb|3HV7|A Chain A, Human P38 Map Kinase In Complex With Rl38
pdb|3HUC|A Chain A, Human P38 Map Kinase In Complex With Rl40
pdb|3LFA|A Chain A, Human P38 Map Kinase In Complex With Dasatinib
pdb|3QUE|A Chain A, Human P38 Map Kinase In Complex With Skepinone-L
pdb|3QUD|A Chain A, Human P38 Map Kinase In Complex With
2-Amino-Phenylamino-Benzophenone
pdb|3UVP|A Chain A, Human P38 Map Kinase In Complex With A Benzamide
Substituted Benzosuberone
pdb|3UVQ|A Chain A, Human P38 Map Kinase In Complex With A Dibenzosuberone
Derivative
pdb|4EH2|A Chain A, Human P38 Map Kinase In Complex With Np-F1 And Rl87
pdb|4EH3|A Chain A, Human P38 Map Kinase In Complex With Np-F2 And Rl87
pdb|4EH4|A Chain A, Human P38 Map Kinase In Complex With Np-F3 And Rl87
pdb|4EH5|A Chain A, Human P38 Map Kinase In Complex With Np-F4 And Rl87
pdb|4EH6|A Chain A, Human P38 Map Kinase In Complex With Np-F5 And Rl87
pdb|4EH7|A Chain A, Human P38 Map Kinase In Complex With Np-F6 And Rl87
pdb|4EH8|A Chain A, Human P38 Map Kinase In Complex With Np-F7 And Rl87
pdb|4EH9|A Chain A, Human P38 Map Kinase In Complex With Np-F11 And Rl87
pdb|4EHV|A Chain A, Human P38 Map Kinase In Complex With Np-F10 And Rl87
pdb|3UVR|A Chain A, Human P38 Map Kinase In Complex With Km064
pdb|4DLI|A Chain A, Human P38 Map Kinase In Complex With Rl87
pdb|4DLJ|A Chain A, Human P38 Map Kinase In Complex With Rl163
Length = 360
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P-
Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl-
Pyridin-3-Yl)naphthalen-1-Yl]urea
pdb|3CTQ|A Chain A, Structure Of Map Kinase P38 In Complex With A
1-O-Tolyl-1,2, 3-Triazole-4-Carboxamide
Length = 348
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 130 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 189
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 190 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 244
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 245 KISSESARNYIQSL 258
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 78/199 (39%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++E++ G L
Sbjct: 43 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 102
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L + H HI + T+ + +G+ YL
Sbjct: 103 DYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYLGTKR 135
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H +L T +IL+ KI FGL + VK GE S PES
Sbjct: 136 YIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGE-SPIFWYAPESLTESK 194
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 195 FSVASDVWSFGVVLYELFT 213
>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase
Length = 360
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNAMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
Length = 362
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 136 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 195
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 196 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 250
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 251 KISSESARNYIQSL 264
>pdb|2OZA|B Chain B, Structure Of P38alpha Complex
pdb|3P78|A Chain A, P38 Inhibitor-Bound
pdb|3P79|A Chain A, P38 Inhibitor-Bound
pdb|3P7A|A Chain A, P38 Inhibitor-Bound
pdb|3P7B|A Chain A, P38 Inhibitor-Bound
pdb|3P7C|A Chain A, P38 Inhibitor-Bound
pdb|3P5K|A Chain A, P38 Inhibitor-Bound
Length = 366
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 140 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 199
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 200 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 254
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 255 KISSESARNYIQSL 268
>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A
Pyrrole-2- Carboxamide Inhibitor
Length = 371
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 145 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 204
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 205 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 259
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 260 KISSESARNYIQSL 273
>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499
pdb|3FKO|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3668
pdb|3FLN|C Chain C, P38 Kinase Crystal Structure In Complex With R1487
Length = 372
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 146 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 205
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 206 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 260
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 261 KISSESARNYIQSL 274
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 82/213 (38%), Gaps = 43/213 (20%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
+ G+ G V+ + VAIK + + +D + + + +L HP L+ L G C+
Sbjct: 18 IGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 76
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
++ EFM +G L +L + + E T
Sbjct: 77 QAPICLVFEFMEHGCLSDYLR----------------------TQRGLFAAE-----TLL 109
Query: 535 RIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGERS 589
+ + V G+AYL H L + L+ E+ K++ FG+ + + G +
Sbjct: 110 GMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 169
Query: 590 ENETCGPE----------SDVYCFGVILMELLT 612
+ PE SDV+ FGV++ E+ +
Sbjct: 170 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 202
>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A
Dihydroquinazolinone Inhibitor
pdb|1OUK|A Chain A, The Structure Of P38 Alpha In Complex With A
Pyridinylimidazole Inhibitor
pdb|1OUY|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydropyrido- Pyrimidine Inhibitor
pdb|1R39|A Chain A, The Structure Of P38alpha
pdb|1YQJ|A Chain A, Crystal Structure Of P38 Alpha In Complex With A Selective
Pyridazine Inhibitor
pdb|2OKR|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2OKR|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|B Chain B, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|1WFC|A Chain A, Structure Of Apo, Unphosphorylated, P38 Mitogen Activated
Protein Kinase P38 (P38 Map Kinase) The Mammalian
Homologue Of The Yeast Hog1 Protein
pdb|3DS6|A Chain A, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|B Chain B, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|C Chain C, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|D Chain D, P38 Complex With A Phthalazine Inhibitor
pdb|3FC1|X Chain X, Crystal Structure Of P38 Kinase Bound To
Pyrimido-Pyridazinone Inhibitor
pdb|3GFE|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor
pdb|3ITZ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridazine Inhibitor
pdb|3LHJ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor.
pdb|3ZYA|A Chain A, Human P38 Map Kinase In Complex With 2-Amino-Phenylamino-
Dibenzosuberone
pdb|3U8W|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Triazolopyridazinone Inhibitor
Length = 366
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 140 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 199
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 200 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 254
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 255 KISSESARNYIQSL 268
>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole
Inhibitor
Length = 372
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 146 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 205
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 206 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 260
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 261 KISSESARNYIQSL 274
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 74
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 75 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 112
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS 589
++T +A L+Y H H + ++LL + E KIA FG V R
Sbjct: 113 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW---SVHAPSSR- 162
Query: 590 ENETCG------PES----------DVYCFGVILMELLTGK 614
E CG PE D++ GV+ E L GK
Sbjct: 163 RTELCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203
>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195
pdb|3FKL|A Chain A, P38 Kinase Crystal Structure In Complex With Ro9552
pdb|3FKN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro7125
pdb|3FL4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro5634
pdb|3FLQ|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((S)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin
pdb|3FLS|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((R)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin-7-One
pdb|3FLW|A Chain A, P38 Kinase Crystal Structure In Complex With Pamapimod
pdb|3FLY|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-Isopropylamino-8-Methyl-8h-Pyrido[2,
3- D]pyrimidin-7-One
pdb|3FLZ|A Chain A, P38 Kinase Crystal Structure In Complex With
8-Methyl-6-Phenoxy-2-
(Tetrahydro-Pyran-4-Ylamino)-8h-Pyrido[2,
3-D]pyrimidin-7-One
pdb|3FMH|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((R)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FMJ|A Chain A, P38 Kinase Crystal Structure In Complex With
4-(5-Methyl-3-Phenyl- Isoxazol-4-Yl)-Pyrimidin-2-Ylamine
pdb|3FMK|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((S)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FML|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6224
pdb|3FMM|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6226
pdb|3FMN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro2530
pdb|3FSF|A Chain A, P38 Kinase Crystal Structure In Complex With 3-(2,6-
Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-
Phenylamino]-
1-Methyl-3,4-Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3FSK|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6257
Length = 372
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 146 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 205
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 206 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 260
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 261 KISSESARNYIQSL 274
>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
pdb|1P38|A Chain A, The Structure Of The Map Kinase P38 At 2.1 Angstoms
Resolution
Length = 379
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 153 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 212
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 213 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 267
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 268 KISSESARNYIQSL 281
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 114/282 (40%), Gaps = 66/282 (23%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V++EF G
Sbjct: 61 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 118
Query: 489 DLHRWLHE-----LPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVA 541
+L +L +P P ED D H I + VA
Sbjct: 119 NLSTYLRSKRNEFVPYKTP--EDLYKDFL------------------TLEHLICYSFQVA 158
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCG 595
+G+ +L H L +ILL+E KI FGL R+I V+ R +
Sbjct: 159 KGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMA 218
Query: 596 PE----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRL 641
PE SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 219 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY-- 275
Query: 642 KLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+ EM +++ C P +RPT +++ L ++
Sbjct: 276 ------TTPEMYQTM---LDCWHGEPSQRPTFSELVEHLGNL 308
>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 380
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 154 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 213
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 214 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 268
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 269 KISSESARNYIQSL 282
>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
pdb|2EWA|A Chain A, Dual Binding Mode Of Pyridinylimidazole To Map Kinase P38
pdb|1A9U|A Chain A, The Complex Structure Of The Map Kinase P38SB203580
pdb|3HA8|A Chain A, The Complex Structure Of The Map Kinase P38COMPOUND 14B
Length = 379
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 153 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 212
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 213 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 267
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 268 KISSESARNYIQSL 281
>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1-
Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3-
Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide
Length = 380
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 154 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 213
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 214 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 268
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 269 KISSESARNYIQSL 282
>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor
Length = 383
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 157 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 216
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 217 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 271
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 272 KISSESARNYIQSL 285
>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain
In Complex With A Monocyclic Pyrazolone Inhibitor
Length = 360
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase
Length = 380
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 154 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMXGXVATRWYRAPEI 213
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 214 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 268
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 269 KISSESARNYIQSL 282
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 82/213 (38%), Gaps = 43/213 (20%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
+ G+ G V+ + VAIK + + +D + + + +L HP L+ L G C+
Sbjct: 15 IGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 73
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
++ EFM +G L +L + + E T
Sbjct: 74 QAPICLVFEFMEHGCLSDYLR----------------------TQRGLFAAE-----TLL 106
Query: 535 RIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGERS 589
+ + V G+AYL H L + L+ E+ K++ FG+ + + G +
Sbjct: 107 GMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 166
Query: 590 ENETCGPE----------SDVYCFGVILMELLT 612
+ PE SDV+ FGV++ E+ +
Sbjct: 167 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 199
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 18/188 (9%)
Query: 60 IRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRF 119
+R L L L I + K L N++ L L+ N L+ G F +L ++ L +N+
Sbjct: 65 VRYLALGGNKLHDISALKELTNLTYLI---LTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 120 GGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVK--LSQFSKLMVLDVSNNDLRILPSG-F 176
P ++ LNL+ N+ +L K + + L LD+S N L+ LP G F
Sbjct: 122 QSL----PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177
Query: 177 ANLSKLRHLDISSCKISGNIKPV-SFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNIS 235
L++L+ L + ++ V L SL+Y+ + +N + T P G+++L+
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEW 230
Query: 236 LNKFTGFV 243
+NK +G V
Sbjct: 231 INKHSGVV 238
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 134 FPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSG-FANLSKLRHLDISSCKI 192
P+V+ L L N+ ++ L + + L L ++ N L+ LP+G F L+ L+ L + ++
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 193 SGNIKPV-SFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFTGF 242
V L +L YL++++N + F L+ + L++S N+
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38)
Length = 360
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based
Inhibitor
Length = 383
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 157 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMXGYVATRWYRAPEI 216
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 217 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 271
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 272 KISSESARNYIQSL 285
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 110/271 (40%), Gaps = 55/271 (20%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V++EF G
Sbjct: 62 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 119
Query: 489 DLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVARGLAY 546
+L +L ++ D + K H I + VA+G+ +
Sbjct: 120 NLSTYLRSKRNEFVPYKEAPEDLY--------------KDFLTLEHLICYSFQVAKGMEF 165
Query: 547 LHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCGPE--- 597
L H L +ILL+E KI FGL R+I V+ R + PE
Sbjct: 166 LASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF 225
Query: 598 -------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRLKLGSG 646
SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 226 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY------- 277
Query: 647 DSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+ EM +++ C P +RPT +++
Sbjct: 278 -TTPEMYQTM---LDCWHGEPSQRPTFSELV 304
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 82/213 (38%), Gaps = 43/213 (20%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
+ G+ G V+ + VAIK + + +D + + + +L HP L+ L G C+
Sbjct: 13 IGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 71
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
++ EFM +G L +L + + E T
Sbjct: 72 QAPICLVFEFMEHGCLSDYLR----------------------TQRGLFAAE-----TLL 104
Query: 535 RIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGERS 589
+ + V G+AYL H L + L+ E+ K++ FG+ + + G +
Sbjct: 105 GMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 164
Query: 590 ENETCGPE----------SDVYCFGVILMELLT 612
+ PE SDV+ FGV++ E+ +
Sbjct: 165 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 197
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 80/203 (39%), Gaps = 49/203 (24%)
Query: 430 GELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMAN 487
GE+ VA+K L ++ D + L L+H N++ G C AG+ L +++E++
Sbjct: 38 GEV-VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 96
Query: 488 GDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYL 547
G L +L + H HI + T+ + +G+ YL
Sbjct: 97 GSLRDYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYL 129
Query: 548 HHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 130 GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESL 188
Query: 599 ---------DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 189 TESKFSVASDVWSFGVVLYELFT 211
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 136 ILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLARHTDDEMTGYVATRWYRAPEI 195
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 196 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 250
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 251 KISSESARNYIQSL 264
>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With
Inhibitor Pg-874743
pdb|2GHM|A Chain A, Mutated Map Kinase P38 (Mus Musculus) In Complex With
Inhbitor Pg-895449
Length = 348
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 130 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEI 189
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 190 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 244
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 245 KISSESARNYIQSL 258
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 140 ILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLARHTDDEMTGYVATRWYRAPEI 199
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 200 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 254
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 255 KISSESARNYIQSL 268
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV 585
EK + V + + +G+ Y+H H L S+I L ++ + KI FGL +KN
Sbjct: 131 EKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDFGLVT-SLKND 189
Query: 586 GERSE--------------NETCGPESDVYCFGVILMELL 611
G+R+ ++ G E D+Y G+IL ELL
Sbjct: 190 GKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELL 229
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 95/234 (40%), Gaps = 56/234 (23%)
Query: 404 AATSHFGKESLLAEGRCGPVY---RAVLPGELHV-AIKVLDNA--KGIDHDDAVAMFDEL 457
A SHF +L +G G V+ + P H+ A+KVL A K D D L
Sbjct: 25 ADPSHFELLKVLGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRVRTKMERDIL 84
Query: 458 SRLKHPNLLPLAGYCIAGKEKLVL-LEFMANGDLH-RWLHELPTGEPNVEDWSTDTWDHH 515
+ + HP ++ L Y + KL L L+F+ GDL R E+ E +V+ + +
Sbjct: 85 ADVNHPFVVKLH-YAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAE----- 138
Query: 516 PGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGF 575
+A GL +LH +G + L +ILL E K+ F
Sbjct: 139 ------------------------LALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDF 174
Query: 576 GLRNIGVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
GL + + E+ CG PE +D + +GV++ E+LTG
Sbjct: 175 GLSKEAIDH--EKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSYGVLMFEMLTG 226
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 80/203 (39%), Gaps = 49/203 (24%)
Query: 430 GELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMAN 487
GE+ VA+K L ++ D + L L+H N++ G C AG+ L +++E++
Sbjct: 43 GEV-VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 101
Query: 488 GDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYL 547
G L +L + H HI + T+ + +G+ YL
Sbjct: 102 GSLRDYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYL 134
Query: 548 HHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 135 GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESL 193
Query: 599 ---------DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 194 TESKFSVASDVWSFGVVLYELFT 216
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 46/217 (21%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 21 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 79
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G++++ L +L S
Sbjct: 80 GYFHDATRVYLILEYAPRGEVYKELQKL----------------------SKFDEQRTAT 117
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-------RNIGV 582
++T +A L+Y H H + ++LL + E KIA FG R +
Sbjct: 118 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXL 171
Query: 583 KNV-----GERSENETCGPESDVYCFGVILMELLTGK 614
E E + D++ GV+ E L GK
Sbjct: 172 XGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLCRHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++E++ G L
Sbjct: 47 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 106
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L + H HI + T+ + +G+ YL
Sbjct: 107 DYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYLGTKR 139
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 140 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESLTESK 198
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 199 FSVASDVWSFGVVLYELFT 217
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 80/203 (39%), Gaps = 49/203 (24%)
Query: 430 GELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMAN 487
GE+ VA+K L ++ D + L L+H N++ G C AG+ L +++E++
Sbjct: 39 GEV-VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 97
Query: 488 GDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYL 547
G L +L + H HI + T+ + +G+ YL
Sbjct: 98 GSLRDYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYL 130
Query: 548 HHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 131 GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESL 189
Query: 599 ---------DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 190 TESKFSVASDVWSFGVVLYELFT 212
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++E++ G L
Sbjct: 73 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 132
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L + H HI + T+ + +G+ YL
Sbjct: 133 DYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYLGTKR 165
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 166 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESLTESK 224
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 225 FSVASDVWSFGVVLYELFT 243
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++E++ G L
Sbjct: 40 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 99
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L + H HI + T+ + +G+ YL
Sbjct: 100 DYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYLGTKR 132
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 133 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESLTESK 191
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 192 FSVASDVWSFGVVLYELFT 210
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++E++ G L
Sbjct: 45 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 104
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L + H HI + T+ + +G+ YL
Sbjct: 105 DYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYLGTKR 137
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 138 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESLTESK 196
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 197 FSVASDVWSFGVVLYELFT 215
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 15/112 (13%)
Query: 80 RNMSELHSIDLSNNSLKG----SVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFP 135
+NMS L ++D+S NSL W +S+ +NLS N G++ R P P
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAW---AESILVLNLSSNMLTGSVF-----RCLP-P 450
Query: 136 SVQVLNLSSNRFTNLVK-LSQFSKLMVLDVSNNDLRILPSG-FANLSKLRHL 185
V+VL+L +NR ++ K ++ L L+V++N L+ +P G F L+ L+++
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 136 SVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKISGN 195
S+ VLNLSSN T V K+ VLD+ NN + +P +L L+ L+++S ++
Sbjct: 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488
Query: 196 IKPV-SFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFTGFV 243
V L SL+Y+ + +N + T P G+++L+ +NK +G V
Sbjct: 489 PDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVV 530
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 179 LSKLRHLDISSCKI-SGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLN 237
LS+LR L +S +I S + F L+YLDVS+N + P++ ++ L++S N
Sbjct: 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFN 131
Query: 238 KFTGFVGHDKYQKFGKSAFI 257
F ++ K F+
Sbjct: 132 DFDVLPVCKEFGNLTKLTFL 151
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++E++ G L
Sbjct: 42 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 101
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L + H HI + T+ + +G+ YL
Sbjct: 102 DYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYLGTKR 134
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 135 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGE-SPIFWYAPESLTESK 193
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 194 FSVASDVWSFGVVLYELFT 212
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++E++ G L
Sbjct: 48 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 107
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L + H HI + T+ + +G+ YL
Sbjct: 108 DYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYLGTKR 140
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 141 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESLTESK 199
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 200 FSVASDVWSFGVVLYELFT 218
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++E++ G L
Sbjct: 49 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 108
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L + H HI + T+ + +G+ YL
Sbjct: 109 DYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYLGTKR 141
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 142 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESLTESK 200
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 201 FSVASDVWSFGVVLYELFT 219
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++E++ G L
Sbjct: 42 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 101
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L + H HI + T+ + +G+ YL
Sbjct: 102 DYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYLGTKR 134
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 135 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESLTESK 193
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 194 FSVASDVWSFGVVLYELFT 212
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 82/213 (38%), Gaps = 43/213 (20%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
+ G+ G V+ + VAIK + + +D + + + +L HP L+ L G C+
Sbjct: 16 IGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLE 74
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
++ EFM +G L +L + + E T
Sbjct: 75 QAPICLVTEFMEHGCLSDYLR----------------------TQRGLFAAE-----TLL 107
Query: 535 RIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-----VGERS 589
+ + V G+AYL H L + L+ E+ K++ FG+ + + G +
Sbjct: 108 GMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKF 167
Query: 590 ENETCGPE----------SDVYCFGVILMELLT 612
+ PE SDV+ FGV++ E+ +
Sbjct: 168 PVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 200
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 112/275 (40%), Gaps = 65/275 (23%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V++EF G
Sbjct: 62 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 119
Query: 489 DLHRWL----HELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVAR 542
+L +L +E +P ED D H I + VA+
Sbjct: 120 NLSTYLRSKRNEFVPYKP--EDLYKDFL------------------TLEHLIXYSFQVAK 159
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCGP 596
G+ +L H L +ILL+E KI FGL R+I V+ R + P
Sbjct: 160 GMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAP 219
Query: 597 E----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRLK 642
E SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 220 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY--- 275
Query: 643 LGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+ EM +++ C P +RPT +++
Sbjct: 276 -----TTPEMYQTM---LDCWHGEPSQRPTFSELV 302
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 21 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 79
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G++++ L +L S
Sbjct: 80 GYFHDATRVYLILEYAPRGEVYKELQKL----------------------SKFDEQRTAT 117
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 118 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTL 171
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 172 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 208
>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8U|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI +GL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDYGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 46/217 (21%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 17 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 75
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 76 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 113
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-------RNIGV 582
++T +A L+Y H H + ++LL + E KIA FG R +
Sbjct: 114 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSCHAPSSRRTTL 167
Query: 583 KNV-----GERSENETCGPESDVYCFGVILMELLTGK 614
E E + D++ GV+ E L GK
Sbjct: 168 SGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 114/281 (40%), Gaps = 63/281 (22%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V++EF G
Sbjct: 51 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 108
Query: 489 DLHRWL----HELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVAR 542
+L +L +E + ED D H I + VA+
Sbjct: 109 NLSTYLRSKRNEFVPYKVAPEDLYKDFL------------------TLEHLICYSFQVAK 150
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCGP 596
G+ +L H L +ILL+E KI FGL R+I V+ R + P
Sbjct: 151 GMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAP 210
Query: 597 E----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRLK 642
E SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 211 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY--- 266
Query: 643 LGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+ EM +++ C P +RPT +++ L ++
Sbjct: 267 -----TTPEMYQTM---LDCWHGEPSQRPTFSELVEHLGNL 299
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 111/275 (40%), Gaps = 63/275 (22%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V++EF G
Sbjct: 60 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 117
Query: 489 DLHRWL----HELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVAR 542
+L +L +E + ED D H I + VA+
Sbjct: 118 NLSTYLRSKRNEFVPYKVAPEDLYKDFL------------------TLEHLICYSFQVAK 159
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCGP 596
G+ +L H L +ILL+E KI FGL R+I V+ R + P
Sbjct: 160 GMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDXVRKGDARLPLKWMAP 219
Query: 597 E----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRLK 642
E SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 220 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY--- 275
Query: 643 LGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+ EM +++ C P +RPT +++
Sbjct: 276 -----TTPEMYQTM---LDCWHGEPSQRPTFSELV 302
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 87/221 (39%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 42 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 100
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 101 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 138
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS 589
++T +A L+Y H H + ++LL + E KIA FG V R
Sbjct: 139 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW---SVHAPSSRR 189
Query: 590 ENETCG------PES----------DVYCFGVILMELLTGK 614
++ CG PE D++ GV+ E L GK
Sbjct: 190 -DDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 229
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++E++ G L
Sbjct: 60 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 119
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L + H HI + T+ + +G+ YL
Sbjct: 120 DYLQK------------------HKERIDHIKLLQYTSQI---------CKGMEYLGTKR 152
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 153 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESLTESK 211
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 212 FSVASDVWSFGVVLYELFT 230
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 19/156 (12%)
Query: 79 LRNMSELHSIDLSNNSLKG--SVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPS 136
L+N++++ ++LS N LK ++ G QS+ ++L+ + S
Sbjct: 81 LKNLTKITELELSGNPLKNVSAIAGL----QSIKTLDLTSTQITDVTPLAGLSN------ 130
Query: 137 VQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKISGNI 196
+QVL L N+ TN+ L+ + L L + N + L + ANLSKL L KIS +I
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKIS-DI 188
Query: 197 KPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
P++ L +L + + NN + SD PL+ L
Sbjct: 189 SPLASLPNLIEVHLKNNQI-----SDVSPLANTSNL 219
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++E++ G L
Sbjct: 60 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 119
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L + H HI + T+ + +G+ YL
Sbjct: 120 DYLQK------------------HKERIDHIKLLQYTS---------QICKGMEYLGTKR 152
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 153 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESLTESK 211
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 212 FSVASDVWSFGVVLYELFT 230
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 21 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 79
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 80 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 117
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 118 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTL 171
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 172 CGTLDYLPPEXIEGRXHDEKV----DLWSLGVLCYEFLVGK 208
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 108/271 (39%), Gaps = 59/271 (21%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V++EF G
Sbjct: 60 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 117
Query: 489 DLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVARGLAY 546
+L +L +D D H I + VA+G+ +
Sbjct: 118 NLSTYLRSKRNEFVPYKDLYKDFL------------------TLEHLICYSFQVAKGMEF 159
Query: 547 LHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCGPE--- 597
L H L +ILL+E KI FGL R+I V+ R + PE
Sbjct: 160 LASRKXIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF 219
Query: 598 -------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRLKLGSG 646
SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 220 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY------- 271
Query: 647 DSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+ EM +++ C P +RPT +++
Sbjct: 272 -TTPEMYQTM---LDCWHGEPSQRPTFSELV 298
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 19/167 (11%)
Query: 60 IRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRF 119
+ ++N S+ L+ I L+N+++L I ++NN + P + +LT + L N+
Sbjct: 65 LTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 120 GGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANL 179
K ++ L LSSN +++ LS + L L+ N + P ANL
Sbjct: 120 TDIDPLKN------LTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANL 171
Query: 180 SKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPL 226
+ L LDISS K+S +I ++ L +L+ L +NN + SD PL
Sbjct: 172 TTLERLDISSNKVS-DISVLAKLTNLESLIATNNQI-----SDITPL 212
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 21/176 (11%)
Query: 58 TPIRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKG-SVPGWFWSTQSLTQVNLSK 116
T +++LN ++ + K L N++ L +D+S+N + SV + +SL N
Sbjct: 151 TSLQQLNFGNQ----VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN--- 203
Query: 117 NRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGF 176
N+ G ++ L+L+ N+ ++ L+ + L LD++NN + L +
Sbjct: 204 NQISDITPL------GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APL 256
Query: 177 ANLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
+ L+KL L + + +IS NI P++ L +L L+++ N + D P+S +K L
Sbjct: 257 SGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQL-----EDISPISNLKNL 306
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Query: 140 LNLSSNRFTNLVKLSQFSKLMVLDVSNNDLR-ILPSGFANLSKLRHLDISSCKISGNIKP 198
+N S+N+ T++ L +KL+ + ++NN + I P ANL+ L L + + +I+ +I P
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP 124
Query: 199 VSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
+ L +L L++S+N++ SD LSG+ L
Sbjct: 125 LKNLTNLNRLELSSNTI-----SDISALSGLTSL 153
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 111/275 (40%), Gaps = 63/275 (22%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V++EF G
Sbjct: 60 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 117
Query: 489 DLHRWL----HELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVAR 542
+L +L +E + ED D H I + VA+
Sbjct: 118 NLSTYLRSKRNEFVPYKVAPEDLYKDFL------------------TLEHLICYSFQVAK 159
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCGP 596
G+ +L H L +ILL+E KI FGL R+I V+ R + P
Sbjct: 160 GMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAP 219
Query: 597 E----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRLK 642
E SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 220 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY--- 275
Query: 643 LGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+ EM +++ C P +RPT +++
Sbjct: 276 -----TTPEMYQTM---LDCWHGEPSQRPTFSELV 302
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 19/167 (11%)
Query: 60 IRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRF 119
+ ++N S+ L+ I L+N+++L I ++NN + P + +LT + L N+
Sbjct: 65 LTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 120 GGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANL 179
K ++ L LSSN +++ LS + L L+ N + P ANL
Sbjct: 120 TDIDPLKN------LTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKP--LANL 171
Query: 180 SKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPL 226
+ L LDISS K+S +I ++ L +L+ L +NN + SD PL
Sbjct: 172 TTLERLDISSNKVS-DISVLAKLTNLESLIATNNQI-----SDITPL 212
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 87/176 (49%), Gaps = 21/176 (11%)
Query: 58 TPIRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKG-SVPGWFWSTQSLTQVNLSK 116
T +++LN ++ + K L N++ L +D+S+N + SV + +SL N
Sbjct: 151 TSLQQLNFGNQ----VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN--- 203
Query: 117 NRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGF 176
N+ G ++ L+L+ N+ ++ L+ + L LD++NN + L +
Sbjct: 204 NQISDITPL------GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APL 256
Query: 177 ANLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
+ L+KL L + + +IS NI P++ L +L L+++ N + D P+S +K L
Sbjct: 257 SGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQL-----EDISPISNLKNL 306
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 58 TPIRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKN 117
T + L ++ +S I L N+ EL L+ N LK G S +LT ++L+ N
Sbjct: 194 TNLESLIATNNQISDITPLGILTNLDELS---LNGNQLKD--IGTLASLTNLTDLDLANN 248
Query: 118 RFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFA 177
+ P S + L L +N+ +N+ L+ + L L+++ N L + S +
Sbjct: 249 QISN---LAPLSG---LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI-SPIS 301
Query: 178 NLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLN 233
NL L +L + IS +I PVS L L+ L SNN + SD L+ + +N
Sbjct: 302 NLKNLTYLTLYFNNIS-DISPVSSLTKLQRLFFSNNKV-----SDVSSLANLTNIN 351
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Query: 140 LNLSSNRFTNLVKLSQFSKLMVLDVSNNDLR-ILPSGFANLSKLRHLDISSCKISGNIKP 198
+N S+N+ T++ L +KL+ + ++NN + I P ANL+ L L + + +I+ +I P
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP 124
Query: 199 VSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
+ L +L L++S+N++ SD LSG+ L
Sbjct: 125 LKNLTNLNRLELSSNTI-----SDISALSGLTSL 153
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 49/199 (24%)
Query: 433 HVAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLAGYCIAGKEKLVLLEFMANGD 489
VA+K +D K + +F+E+ ++ H N++ + + G E V++EF+ G
Sbjct: 72 QVAVKKMDLRKQQRRE---LLFNEVVIMRDYHHDNVVDMYSSYLVGDELWVVMEFLEGGA 128
Query: 490 LHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHH 549
L TD H I++ + + V R L+YLH+
Sbjct: 129 L------------------TDIVTHTRMNEEQIAT-----------VCLSVLRALSYLHN 159
Query: 550 VGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS--------------ENETCG 595
G H + + SILL K++ FG K V +R G
Sbjct: 160 QGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKXLVGTPYWMAPEVISRLPYG 219
Query: 596 PESDVYCFGVILMELLTGK 614
E D++ G++++E++ G+
Sbjct: 220 TEVDIWSLGIMVIEMIDGE 238
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 46/217 (21%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 17 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 75
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 76 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 113
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL--------RNIG 581
++T +A L+Y H H + ++LL + E KIA FG R+
Sbjct: 114 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRDTL 167
Query: 582 VKNVG----ERSENETCGPESDVYCFGVILMELLTGK 614
+ E E + D++ GV+ E L GK
Sbjct: 168 CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 76/199 (38%), Gaps = 48/199 (24%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI-AGKEKL-VLLEFMANGDLH 491
VA+K L ++ D + L L+H N++ G C AG+ L +++E++ G L
Sbjct: 45 VAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLR 104
Query: 492 RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVG 551
+L H HI + T+ + +G+ YL
Sbjct: 105 DYLQA------------------HAERIDHIKLLQYTS---------QICKGMEYLGTKR 137
Query: 552 STHGHLVTSSILLAESLEPKIAGFGLRNI--------GVKNVGERSENETCGPES----- 598
H L T +IL+ KI FGL + VK GE S PES
Sbjct: 138 YIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGE-SPIFWYAPESLTESK 196
Query: 599 -----DVYCFGVILMELLT 612
DV+ FGV+L EL T
Sbjct: 197 FSVASDVWSFGVVLYELFT 215
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 111/275 (40%), Gaps = 63/275 (22%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V++EF G
Sbjct: 60 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 117
Query: 489 DLHRWL----HELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVAR 542
+L +L +E + ED D H I + VA+
Sbjct: 118 NLSTYLRSKRNEFVPYKVAPEDLYKDFL------------------TLEHLICYSFQVAK 159
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCGP 596
G+ +L H L +ILL+E KI FGL R+I V+ R + P
Sbjct: 160 GMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP 219
Query: 597 E----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRLK 642
E SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 220 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY--- 275
Query: 643 LGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+ EM +++ C P +RPT +++
Sbjct: 276 -----TTPEMYQTM---LDCWHGEPSQRPTFSELV 302
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 17 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 75
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 76 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 113
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS 589
++T +A L+Y H H + ++LL + E KIA FG V R
Sbjct: 114 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW---SVHAPSSR- 163
Query: 590 ENETCG------PES----------DVYCFGVILMELLTGK 614
+ CG PE D++ GV+ E L GK
Sbjct: 164 RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 204
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 108/271 (39%), Gaps = 59/271 (21%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V++EF G
Sbjct: 60 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 117
Query: 489 DLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVARGLAY 546
+L +L +D D H I + VA+G+ +
Sbjct: 118 NLSTYLRSKRNEFVPYKDLYKDFL------------------TLEHLIXYSFQVAKGMEF 159
Query: 547 LHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCGPE--- 597
L H L +ILL+E KI FGL R+I V+ R + PE
Sbjct: 160 LASRKXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDYVRKGDARLPLKWMAPETIF 219
Query: 598 -------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRLKLGSG 646
SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 220 DRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFXRRL-KEGTRMRAPDY------- 271
Query: 647 DSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+ EM +++ C P +RPT +++
Sbjct: 272 -TTPEMYQTM---LDCWHGEPSQRPTFSELV 298
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 103/261 (39%), Gaps = 65/261 (24%)
Query: 405 ATSHFGKESLLAEGRCGPVYRAVLPGELHV-AIKVLDNAKGIDHDDAVAMFDELSR---- 459
A + E + +G G V++ L + V AIK L + + F E R
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 460 ---LKHPNLLPLAGYCIAGKEKLVLLEFMANGDL-HRWLHELPTGEPNVEDWSTDTWDHH 515
L HPN++ L Y + +++EF+ GDL HR L + H
Sbjct: 77 MSNLNHPNIVKL--YGLMHNPPRMVMEFVPCGDLYHRLLDKA-----------------H 117
Query: 516 PGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGS--THGHLVTSSILLAESLE---- 569
P W + R+ + +A G+ Y+ + H L + +I L +SL+
Sbjct: 118 P-----------IKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFL-QSLDENAP 165
Query: 570 --PKIAGFGLRNIGVKNVGERSEN------ETCGPE-------SDVYCFGVILMELLTGK 614
K+A FG V +V N ET G E +D Y F +IL +LTG+
Sbjct: 166 VCAKVADFGTSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGE 225
Query: 615 RGTDDC----VKWVRKLVKEG 631
D+ +K++ + +EG
Sbjct: 226 GPFDEYSYGKIKFINMIREEG 246
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 18 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 76
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 77 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 114
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 115 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTTL 168
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 169 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 205
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 21 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 79
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 80 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 117
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS 589
++T +A L+Y H H + ++LL + E KIA FG V R
Sbjct: 118 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW---SVHAPSSR- 167
Query: 590 ENETCG------PES----------DVYCFGVILMELLTGK 614
+ CG PE D++ GV+ E L GK
Sbjct: 168 RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 111/275 (40%), Gaps = 63/275 (22%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V++EF G
Sbjct: 97 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFG 154
Query: 489 DLHRWL----HELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVAR 542
+L +L +E + ED D H I + VA+
Sbjct: 155 NLSTYLRSKRNEFVPYKVAPEDLYKDFL------------------TLEHLICYSFQVAK 196
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCGP 596
G+ +L H L +ILL+E KI FGL R+I V+ R + P
Sbjct: 197 GMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP 256
Query: 597 E----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRLK 642
E SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 257 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY--- 312
Query: 643 LGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+ EM +++ C P +RPT +++
Sbjct: 313 -----TTPEMYQTM---LDCWHGEPSQRPTFSELV 339
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 42 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 100
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 101 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 138
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 139 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTL 192
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 193 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 229
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 87/221 (39%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 77
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 78 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 115
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS 589
++T +A L+Y H H + ++LL + E KIA FG V R
Sbjct: 116 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW---SVHAPSSR- 165
Query: 590 ENETCG------PES----------DVYCFGVILMELLTGK 614
++ CG PE D++ GV+ E L GK
Sbjct: 166 RDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 33 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 91
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 92 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 129
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 130 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTL 183
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 184 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 220
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 60 IRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRF 119
+ ++N S+ L+ I L+N+++L I ++NN + P + +LT + L N+
Sbjct: 69 LTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 123
Query: 120 GGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANL 179
K ++ L LSSN +++ LS + L L N + P ANL
Sbjct: 124 TDIDPLKN------LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANL 175
Query: 180 SKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPL 226
+ L LDISS K+S +I ++ L +L+ L +NN + SD PL
Sbjct: 176 TTLERLDISSNKVS-DISVLAKLTNLESLIATNNQI-----SDITPL 216
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 17/161 (10%)
Query: 73 IISWKFLRNMSELHSIDLSNNSLKG-SVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRN 131
+ K L N++ L +D+S+N + SV + +SL N N+
Sbjct: 166 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITPL------ 216
Query: 132 GPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCK 191
G ++ L+L+ N+ ++ L+ + L LD++NN + L + + L+KL L + + +
Sbjct: 217 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQ 275
Query: 192 ISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
IS NI P++ L +L L+++ N + D P+S +K L
Sbjct: 276 IS-NISPLAGLTALTNLELNENQL-----EDISPISNLKNL 310
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Query: 140 LNLSSNRFTNLVKLSQFSKLMVLDVSNNDLR-ILPSGFANLSKLRHLDISSCKISGNIKP 198
+N S+N+ T++ L +KL+ + ++NN + I P ANL+ L L + + +I+ +I P
Sbjct: 72 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP 128
Query: 199 VSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
+ L +L L++S+N++ SD LSG+ L
Sbjct: 129 LKNLTNLNRLELSSNTI-----SDISALSGLTSL 157
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 74
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 75 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 112
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 113 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTL 166
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 167 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 203
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 74
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 75 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 112
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS 589
++T +A L+Y H H + ++LL + E KIA FG V R
Sbjct: 113 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW---SVHAPSSR- 162
Query: 590 ENETCG------PES----------DVYCFGVILMELLTGK 614
+ CG PE D++ GV+ E L GK
Sbjct: 163 RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 21 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 79
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 80 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 117
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 118 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTL 171
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 172 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 208
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 77
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 78 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 115
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 116 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTL 169
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 170 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 206
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 60 IRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRF 119
+ ++N S+ L+ I L+N+++L I ++NN + P + +LT + L N+
Sbjct: 70 LTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124
Query: 120 GGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANL 179
K ++ L LSSN +++ LS + L L N + P ANL
Sbjct: 125 TDIDPLKN------LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP--LANL 176
Query: 180 SKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPL 226
+ L LDISS K+S +I ++ L +L+ L +NN + SD PL
Sbjct: 177 TTLERLDISSNKVS-DISVLAKLTNLESLIATNNQI-----SDITPL 217
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 17/161 (10%)
Query: 73 IISWKFLRNMSELHSIDLSNNSLKG-SVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRN 131
+ K L N++ L +D+S+N + SV + +SL N N+
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN---NQISDITPL------ 217
Query: 132 GPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCK 191
G ++ L+L+ N+ ++ L+ + L LD++NN + L + + L+KL L + + +
Sbjct: 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQ 276
Query: 192 ISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
IS NI P++ L +L L+++ N + D P+S +K L
Sbjct: 277 IS-NISPLAGLTALTNLELNENQL-----EDISPISNLKNL 311
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 55/94 (58%), Gaps = 9/94 (9%)
Query: 140 LNLSSNRFTNLVKLSQFSKLMVLDVSNNDL-RILPSGFANLSKLRHLDISSCKISGNIKP 198
+N S+N+ T++ L +KL+ + ++NN + I P ANL+ L L + + +I+ +I P
Sbjct: 73 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP 129
Query: 199 VSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
+ L +L L++S+N++ SD LSG+ L
Sbjct: 130 LKNLTNLNRLELSSNTI-----SDISALSGLTSL 158
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 77
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 78 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 115
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 116 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIANFGWSVHAPSSRRTTL 169
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 170 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 206
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 18 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 76
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 77 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 114
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 115 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXL 168
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 169 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 205
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 18/110 (16%)
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
HI S K + A + GL +LH G + L +ILL + KIA FG+
Sbjct: 109 HIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKE 168
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTGK 614
+ +G+ NE CG PE D + FGV+L E+L G+
Sbjct: 169 NM--LGDAKTNEFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ 216
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 103/261 (39%), Gaps = 65/261 (24%)
Query: 405 ATSHFGKESLLAEGRCGPVYRAVLPGELHV-AIKVLDNAKGIDHDDAVAMFDELSR---- 459
A + E + +G G V++ L + V AIK L + + F E R
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 460 ---LKHPNLLPLAGYCIAGKEKLVLLEFMANGDL-HRWLHELPTGEPNVEDWSTDTWDHH 515
L HPN++ L Y + +++EF+ GDL HR L + H
Sbjct: 77 MSNLNHPNIVKL--YGLMHNPPRMVMEFVPCGDLYHRLLDKA-----------------H 117
Query: 516 PGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGS--THGHLVTSSILLAESLE---- 569
P W + R+ + +A G+ Y+ + H L + +I L +SL+
Sbjct: 118 P-----------IKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFL-QSLDENAP 165
Query: 570 --PKIAGFGLRNIGVKNVGERSEN------ETCGPE-------SDVYCFGVILMELLTGK 614
K+A F L V +V N ET G E +D Y F +IL +LTG+
Sbjct: 166 VCAKVADFSLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGE 225
Query: 615 RGTDDC----VKWVRKLVKEG 631
D+ +K++ + +EG
Sbjct: 226 GPFDEYSYGKIKFINMIREEG 246
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 88/229 (38%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMF---DELSRLK 461
FGK +L EG V VL EL AIK+L+ I + + D +SRL
Sbjct: 41 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 95
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L +C EKL L + NG+L +++ +
Sbjct: 96 HPFFVKLY-FCFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 130
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 131 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 186
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 187 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 235
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 113/281 (40%), Gaps = 63/281 (22%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V+ EF G
Sbjct: 51 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFG 108
Query: 489 DLHRWL----HELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVAR 542
+L +L +E + ED D H I + VA+
Sbjct: 109 NLSTYLRSKRNEFVPYKVAPEDLYKDFL------------------TLEHLICYSFQVAK 150
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCGP 596
G+ +L H L +ILL+E KI FGL R+I V+ R + P
Sbjct: 151 GMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLPLKWMAP 210
Query: 597 E----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRLK 642
E SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 211 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY--- 266
Query: 643 LGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+ EM +++ C P +RPT +++ L ++
Sbjct: 267 -----TTPEMYQTM---LDCWHGEPSQRPTFSELVEHLGNL 299
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 89/176 (50%), Gaps = 20/176 (11%)
Query: 58 TPIRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKG-SVPGWFWSTQSLTQVNLSK 116
T +++L+ SS ++ + K L N++ L +D+S+N + SV + +SL N
Sbjct: 151 TSLQQLSFSSNQVTDL---KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN--- 204
Query: 117 NRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGF 176
N+ G ++ L+L+ N+ ++ L+ + L LD++NN + L +
Sbjct: 205 NQISDITPL------GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APL 257
Query: 177 ANLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
+ L+KL L + + +IS NI P++ L +L L+++ N + D P+S +K L
Sbjct: 258 SGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQL-----EDISPISNLKNL 307
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 58 TPIRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKN 117
T + L ++ +S I L N+ EL L+ N LK G S +LT ++L+ N
Sbjct: 195 TNLESLIATNNQISDITPLGILTNLDELS---LNGNQLKD--IGTLASLTNLTDLDLANN 249
Query: 118 RFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFA 177
+ P S + L L +N+ +N+ L+ + L L+++ N L + S +
Sbjct: 250 QISN---LAPLSG---LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI-SPIS 302
Query: 178 NLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLN 233
NL L +L + IS +I PVS L L+ L SNN + SD L+ + +N
Sbjct: 303 NLKNLTYLTLYFNNIS-DISPVSSLTKLQRLFFSNNKV-----SDVSSLANLTNIN 352
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Query: 79 LRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQ 138
L N++ L + L NN + P + +L ++ LS N S+Q
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL------SGLTSLQ 154
Query: 139 VLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKISGNIKP 198
L+ SSN+ T+L L+ + L LD+S+N + + S A L+ L L ++ +IS +I P
Sbjct: 155 QLSFSSNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQIS-DITP 212
Query: 199 VSFLHSLKYLDVSNNSMN--GTFPS 221
+ L +L L ++ N + GT S
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLAS 237
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 89/176 (50%), Gaps = 20/176 (11%)
Query: 58 TPIRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKG-SVPGWFWSTQSLTQVNLSK 116
T +++L+ SS ++ + K L N++ L +D+S+N + SV + +SL N
Sbjct: 151 TSLQQLSFSSNQVTDL---KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN--- 204
Query: 117 NRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGF 176
N+ G ++ L+L+ N+ ++ L+ + L LD++NN + L +
Sbjct: 205 NQISDITPL------GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APL 257
Query: 177 ANLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFL 232
+ L+KL L + + +IS NI P++ L +L L+++ N + D P+S +K L
Sbjct: 258 SGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQL-----EDISPISNLKNL 307
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Query: 79 LRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQ 138
L N++ L + L NN + P + +L ++ LS N S+Q
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL------SGLTSLQ 154
Query: 139 VLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKISGNIKP 198
L+ SSN+ T+L L+ + L LD+S+N + + S A L+ L L ++ +IS +I P
Sbjct: 155 QLSFSSNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQIS-DITP 212
Query: 199 VSFLHSLKYLDVSNNSMN--GTFPS 221
+ L +L L ++ N + GT S
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLAS 237
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 46/217 (21%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 77
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 78 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 115
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-------RNIGV 582
++T +A L+Y H H + ++LL + E KIA FG R +
Sbjct: 116 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAAL 169
Query: 583 KNV-----GERSENETCGPESDVYCFGVILMELLTGK 614
E E + D++ GV+ E L GK
Sbjct: 170 CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 206
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 85/240 (35%), Gaps = 65/240 (27%)
Query: 407 SHFGKESL-----LAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDH-DDAVAMFD 455
+HF K L L EG G V E VA+K L G +H D +
Sbjct: 4 THFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIE 63
Query: 456 ELSRLKHPNLLPLAGYCI--AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWD 513
L L H N++ G C G +++EF+ +G L +L +
Sbjct: 64 ILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPK----------------- 106
Query: 514 HHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIA 573
+ K N + + A+ + +G+ YL H L ++L+ + KI
Sbjct: 107 ----------NKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIG 156
Query: 574 GFGLRNIGVKNVGERSENETC-----------GPE----------SDVYCFGVILMELLT 612
FGL K + E T PE SDV+ FGV L ELLT
Sbjct: 157 DFGL----TKAIETDKEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 212
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 85/240 (35%), Gaps = 65/240 (27%)
Query: 407 SHFGKESL-----LAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDH-DDAVAMFD 455
+HF K L L EG G V E VA+K L G +H D +
Sbjct: 16 THFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIE 75
Query: 456 ELSRLKHPNLLPLAGYCI--AGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWD 513
L L H N++ G C G +++EF+ +G L +L +
Sbjct: 76 ILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPK----------------- 118
Query: 514 HHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIA 573
+ K N + + A+ + +G+ YL H L ++L+ + KI
Sbjct: 119 ----------NKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIG 168
Query: 574 GFGLRNIGVKNVGERSENETC-----------GPE----------SDVYCFGVILMELLT 612
FGL K + E T PE SDV+ FGV L ELLT
Sbjct: 169 DFGL----TKAIETDKEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 224
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 113/281 (40%), Gaps = 63/281 (22%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V+ EF G
Sbjct: 51 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFG 108
Query: 489 DLHRWL----HELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVAR 542
+L +L +E + ED D H I + VA+
Sbjct: 109 NLSTYLRSKRNEFVPYKVAPEDLYKDFL------------------TLEHLICYSFQVAK 150
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCGP 596
G+ +L H L +ILL+E KI FGL R+I V+ R + P
Sbjct: 151 GMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP 210
Query: 597 E----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRLK 642
E SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 211 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY--- 266
Query: 643 LGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+ EM +++ C P +RPT +++ L ++
Sbjct: 267 -----TTPEMYQTM---LDCWHGEPSQRPTFSELVEHLGNL 299
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 77/221 (34%), Gaps = 59/221 (26%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V G+ VAIK++ + D+ + + L H L+ L G C
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 90
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
+ ++ E+MANG L +L E+ RH
Sbjct: 91 QRPIFIITEYMANGCLLNYLREM-----------------------------------RH 115
Query: 535 RIAI--------GVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-- 584
R V + YL H L + L+ + K++ FGL + +
Sbjct: 116 RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY 175
Query: 585 ---VGERSENETCGPE----------SDVYCFGVILMELLT 612
VG + PE SD++ FGV++ E+ +
Sbjct: 176 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 216
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 77/221 (34%), Gaps = 59/221 (26%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V G+ VAIK++ + D+ + + L H L+ L G C
Sbjct: 32 LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 90
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
+ ++ E+MANG L +L E+ RH
Sbjct: 91 QRPIFIITEYMANGCLLNYLREM-----------------------------------RH 115
Query: 535 RIAI--------GVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-- 584
R V + YL H L + L+ + K++ FGL + +
Sbjct: 116 RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEE 175
Query: 585 ---VGERSENETCGPE----------SDVYCFGVILMELLT 612
VG + PE SD++ FGV++ E+ +
Sbjct: 176 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 216
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 77/221 (34%), Gaps = 59/221 (26%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V G+ VAIK++ + D+ + + L H L+ L G C
Sbjct: 16 LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 74
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
+ ++ E+MANG L +L E+ RH
Sbjct: 75 QRPIFIITEYMANGCLLNYLREM-----------------------------------RH 99
Query: 535 RIAI--------GVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-- 584
R V + YL H L + L+ + K++ FGL + +
Sbjct: 100 RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY 159
Query: 585 ---VGERSENETCGPE----------SDVYCFGVILMELLT 612
VG + PE SD++ FGV++ E+ +
Sbjct: 160 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 200
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 74
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 75 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 112
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS 589
++T +A L+Y H H + ++LL + E KIA FG V R
Sbjct: 113 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGW---SVHAPSSR- 162
Query: 590 ENETCG------PES----------DVYCFGVILMELLTGK 614
+ CG PE D++ GV+ E L GK
Sbjct: 163 RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 74
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 75 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 112
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 113 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTXL 166
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 167 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 203
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 104/251 (41%), Gaps = 58/251 (23%)
Query: 455 DELSRLK---HPNLLPLAGYCIA--GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWST 509
+E RL+ HPN+LP+ G C + ++ +M G L+ LHE G V D S
Sbjct: 56 EECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHE---GTNFVVDQSQ 112
Query: 510 DTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGS--THGHLVTSSILLAES 567
+ A+ +ARG+A+LH + L + S+++ E
Sbjct: 113 AV-----------------------KFALDMARGMAFLHTLEPLIPRHALNSRSVMIDED 149
Query: 568 LEPKIA----GFGLRNIG--------VKNVGERSENETCGPESDVYCFGVILMELLTGKR 615
+ +I+ F ++ G ++ +T +D++ F V+L EL+T +
Sbjct: 150 MTARISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREV 209
Query: 616 GTDDC--VKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTM 673
D ++ K+ EG L + G V+++++ +C + P KRP
Sbjct: 210 PFADLSNMEIGMKVALEG-----LRPTIPPGISPHVSKLMK------ICMNEDPAKRPKF 258
Query: 674 QQVLGLLKDIR 684
++ +L+ ++
Sbjct: 259 DMIVPILEKMQ 269
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 113/281 (40%), Gaps = 63/281 (22%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRL----KHPNLLPLAGYCIA-GKEKLVLLEFMANG 488
VA+K+L +G H + A+ EL L H N++ L G C G +V+ EF G
Sbjct: 51 VAVKML--KEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFG 108
Query: 489 DLHRWL----HELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRI--AIGVAR 542
+L +L +E + ED D H I + VA+
Sbjct: 109 NLSTYLRSKRNEFVPYKVAPEDLYKDFL------------------TLEHLICYSFQVAK 150
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENETCGP 596
G+ +L H L +ILL+E KI FGL R+I V+ R + P
Sbjct: 151 GMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAP 210
Query: 597 E----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDFRLK 642
E SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 211 ETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY--- 266
Query: 643 LGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683
+ EM +++ C P +RPT +++ L ++
Sbjct: 267 -----TTPEMYQTM---LDCWHGEPSQRPTFSELVEHLGNL 299
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 77
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 78 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 115
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 116 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTL 169
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 170 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 206
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 46/217 (21%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 74
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 75 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 112
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-------RNIGV 582
++T +A L+Y H H + ++LL + E KIA FG R +
Sbjct: 113 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAAL 166
Query: 583 KNV-----GERSENETCGPESDVYCFGVILMELLTGK 614
E E + D++ GV+ E L GK
Sbjct: 167 CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 15 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 73
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 74 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 111
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 112 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTL 165
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 166 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 202
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 20 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 78
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 79 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 116
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 117 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTL 170
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 171 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 207
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 16 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 74
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 75 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 112
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 113 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXL 166
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 167 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 203
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 46/217 (21%)
Query: 415 LAEGRCGPVYRAVLP-GELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 16 LGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 74
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 75 GYFHDSTRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 112
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-------RNIGV 582
++T +A L+Y H H + ++LL + E KIA FG R +
Sbjct: 113 YITE------LANALSYCHSKKVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRAAL 166
Query: 583 KNV-----GERSENETCGPESDVYCFGVILMELLTGK 614
E E + D++ GV+ E L GK
Sbjct: 167 CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 203
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 77
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 78 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 115
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 116 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRXXL 169
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 170 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 206
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 77/221 (34%), Gaps = 59/221 (26%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V G+ VAIK++ + D+ + + L H L+ L G C
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 75
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
+ ++ E+MANG L +L E+ RH
Sbjct: 76 QRPIFIITEYMANGCLLNYLREM-----------------------------------RH 100
Query: 535 RIAI--------GVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-- 584
R V + YL H L + L+ + K++ FGL + +
Sbjct: 101 RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY 160
Query: 585 ---VGERSENETCGPE----------SDVYCFGVILMELLT 612
VG + PE SD++ FGV++ E+ +
Sbjct: 161 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 201
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 51/199 (25%)
Query: 434 VAIKVLD----NAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGD 489
VA+K +D + + ++ V M D +H N++ + + G E V++EF+ G
Sbjct: 179 VAVKKMDLRKQQRRELLFNEVVIMRD----YQHENVVEMYNSYLVGDELWVVMEFLEGGA 234
Query: 490 LHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHH 549
L TD H I++ + + V + L+ LH
Sbjct: 235 L------------------TDIVTHTRMNEEQIAA-----------VCLAVLQALSVLHA 265
Query: 550 VGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS--------------ENETCG 595
G H + + SILL K++ FG K V R G
Sbjct: 266 QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYG 325
Query: 596 PESDVYCFGVILMELLTGK 614
PE D++ G++++E++ G+
Sbjct: 326 PEVDIWSLGIMVIEMVDGE 344
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 52/228 (22%)
Query: 412 ESLLAEGRCGPVY--RAVLPG--ELHVAIKVLDNAKGIDHD--DAVAMFDELSRLKHPNL 465
E ++ G G V R +PG E+ VAIK L A D D ++ + + HPN+
Sbjct: 13 EKVIGVGEFGEVCSGRLKVPGKREICVAIKTL-KAGYTDKQRRDFLSEASIMGQFDHPNI 71
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G K +++ E+M NG L +L + +
Sbjct: 72 IHLEGVVTKCKPVMIITEYMENGSLDAFLRK---------------------------ND 104
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI----- 580
+ + + G+ G+ YL + H L +IL+ +L K++ FG+ +
Sbjct: 105 GRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDP 164
Query: 581 --GVKNVGERSENETCGPE----------SDVYCFGVILMELLT-GKR 615
G + PE SDV+ +G+++ E+++ G+R
Sbjct: 165 EAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGER 212
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 77/221 (34%), Gaps = 59/221 (26%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V G+ VAIK++ + D+ + + L H L+ L G C
Sbjct: 23 LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 81
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
+ ++ E+MANG L +L E+ RH
Sbjct: 82 QRPIFIITEYMANGCLLNYLREM-----------------------------------RH 106
Query: 535 RIAI--------GVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-- 584
R V + YL H L + L+ + K++ FGL + +
Sbjct: 107 RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY 166
Query: 585 ---VGERSENETCGPE----------SDVYCFGVILMELLT 612
VG + PE SD++ FGV++ E+ +
Sbjct: 167 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 207
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 136 SVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKISGN 195
++Q+ N+S+N F ++ L L ++ N L LP+ NLS LR LD+S +++
Sbjct: 233 NLQIFNISANIF-------KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSL 285
Query: 196 IKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLN 237
+ LKY +N M T P +F L ++FL + N
Sbjct: 286 PAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN 326
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 77/221 (34%), Gaps = 59/221 (26%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V G+ VAIK++ + D+ + + L H L+ L G C
Sbjct: 12 LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 70
Query: 475 GKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
+ ++ E+MANG L +L E+ RH
Sbjct: 71 QRPIFIITEYMANGCLLNYLREM-----------------------------------RH 95
Query: 535 RIAI--------GVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN-- 584
R V + YL H L + L+ + K++ FGL + +
Sbjct: 96 RFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY 155
Query: 585 ---VGERSENETCGPE----------SDVYCFGVILMELLT 612
VG + PE SD++ FGV++ E+ +
Sbjct: 156 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYS 196
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 52/228 (22%)
Query: 412 ESLLAEGRCGPVY--RAVLPG--ELHVAIKVLDNAKGIDHD--DAVAMFDELSRLKHPNL 465
E ++ G G V R +PG E+ VAIK L A D D ++ + + HPN+
Sbjct: 19 EKVIGVGEFGEVCSGRLKVPGKREICVAIKTL-KAGYTDKQRRDFLSEASIMGQFDHPNI 77
Query: 466 LPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
+ L G K +++ E+M NG L +L + +
Sbjct: 78 IHLEGVVTKCKPVMIITEYMENGSLDAFLRK---------------------------ND 110
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI----- 580
+ + + G+ G+ YL + H L +IL+ +L K++ FG+ +
Sbjct: 111 GRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDP 170
Query: 581 --GVKNVGERSENETCGPE----------SDVYCFGVILMELLT-GKR 615
G + PE SDV+ +G+++ E+++ G+R
Sbjct: 171 EAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGER 218
>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In
Complex With P38 Map Kinase
Length = 360
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI F L R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFYLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 54/220 (24%)
Query: 415 LAEGRCGPVYRAVL--PGELHVAIKVLD----NAKGIDHDDAVAMFDELSRLKHPNLLPL 468
+ EG G V A + G+L VA+K +D + + ++ V M D +H N++ +
Sbjct: 39 IGEGSTGIVCIATVRSSGKL-VAVKKMDLRKQQRRELLFNEVVIMRD----YQHENVVEM 93
Query: 469 AGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKT 528
+ G E V++EF+ G L TD H I++
Sbjct: 94 YNSYLVGDELWVVMEFLEGGAL------------------TDIVTHTRMNEEQIAA---- 131
Query: 529 NWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGER 588
+ + V + L+ LH G H + + SILL K++ FG K V R
Sbjct: 132 -------VCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR 184
Query: 589 S--------------ENETCGPESDVYCFGVILMELLTGK 614
GPE D++ G++++E++ G+
Sbjct: 185 KXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGE 224
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 54/220 (24%)
Query: 415 LAEGRCGPVYRAVL--PGELHVAIKVLD----NAKGIDHDDAVAMFDELSRLKHPNLLPL 468
+ EG G V A + G+L VA+K +D + + ++ V M D +H N++ +
Sbjct: 37 IGEGSTGIVCIATVRSSGKL-VAVKKMDLRKQQRRELLFNEVVIMRD----YQHENVVEM 91
Query: 469 AGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKT 528
+ G E V++EF+ G L TD H I++
Sbjct: 92 YNSYLVGDELWVVMEFLEGGAL------------------TDIVTHTRMNEEQIAA---- 129
Query: 529 NWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGER 588
+ + V + L+ LH G H + + SILL K++ FG K V R
Sbjct: 130 -------VCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRR 182
Query: 589 S--------------ENETCGPESDVYCFGVILMELLTGK 614
GPE D++ G++++E++ G+
Sbjct: 183 KXLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGE 222
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 52/219 (23%)
Query: 415 LAEGRCGPVYRAVL--PGELHVAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLA 469
+ EG G V A + G+L VA+K +D K + +F+E+ ++ H N++ +
Sbjct: 28 IGEGSTGIVCIATVRSSGKL-VAVKKMDLRKQQRRE---LLFNEVVIMRDYQHENVVEMY 83
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
+ G E V++EF+ G L TD H I++
Sbjct: 84 NSYLVGDELWVVMEFLEGGAL------------------TDIVTHTRMNEEQIAA----- 120
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS 589
+ + V + L+ LH G H + + SILL K++ FG K V R
Sbjct: 121 ------VCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRK 174
Query: 590 --------------ENETCGPESDVYCFGVILMELLTGK 614
GPE D++ G++++E++ G+
Sbjct: 175 XLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGE 213
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 66/236 (27%)
Query: 409 FGKESLLAEGRCGPVYRAV--LPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLL 466
F + L+ G G V++A + G+ +V +V N ++ A L++L H N++
Sbjct: 13 FKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN-----NEKAEREVKALAKLDHVNIV 67
Query: 467 PLAGYCIAG-----------------KEKLVLLEFMANGDLHRWLHELPTGEPNVEDWST 509
G C G K + +EF G L +W+ +
Sbjct: 68 HYNG-CWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEK------------- 113
Query: 510 DTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLE 569
EK + V + + +G+ Y+H + L S+I L ++ +
Sbjct: 114 -------------RRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQ 160
Query: 570 PKIAGFGLRNIGVKNVGERSE--------------NETCGPESDVYCFGVILMELL 611
KI FGL +KN G+R ++ G E D+Y G+IL ELL
Sbjct: 161 VKIGDFGLVT-SLKNDGKRXRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELL 215
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 54/221 (24%)
Query: 415 LAEGRCGPVYRAVLPGELHV-AIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + A+KVL A+ G++H + + S L+HPN+L L
Sbjct: 13 LGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 71
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 72 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SKFDEQRTAT 109
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG------------- 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 110 YITE------LANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTL 163
Query: 577 ---LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTGK 614
L + + + R +E D++ GV+ E L GK
Sbjct: 164 CGTLDYLPPEMIEGRMHDEKV----DLWSLGVLCYEFLVGK 200
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 87/219 (39%), Gaps = 52/219 (23%)
Query: 415 LAEGRCGPVYRAVL--PGELHVAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLA 469
+ EG G V A + G+L VA+K +D K + +F+E+ ++ H N++ +
Sbjct: 32 IGEGSTGIVCIATVRSSGKL-VAVKKMDLRKQQRRE---LLFNEVVIMRDYQHENVVEMY 87
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
+ G E V++EF+ G L TD H I++
Sbjct: 88 NSYLVGDELWVVMEFLEGGAL------------------TDIVTHTRMNEEQIAA----- 124
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS 589
+ + V + L+ LH G H + + SILL K++ FG K V R
Sbjct: 125 ------VCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRK 178
Query: 590 --------------ENETCGPESDVYCFGVILMELLTGK 614
GPE D++ G++++E++ G+
Sbjct: 179 XLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGE 217
>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk
Length = 476
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 75/203 (36%), Gaps = 45/203 (22%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLAGYCIAGKEKLVLLEFMANGDL 490
VA+K+L+ K D + E+ LK HP+++ L + +++E+++ G+L
Sbjct: 44 VAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGEL 103
Query: 491 HRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHV 550
+I + + R+ + G+ Y H
Sbjct: 104 F----------------------------DYICKNGRLDEKESRRLFQQILSGVDYCHRH 135
Query: 551 GSTHGHLVTSSILLAESLEPKIAGFGLRNI-----------GVKNVGER---SENETCGP 596
H L ++LL + KIA FGL N+ G N S GP
Sbjct: 136 MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRXSCGSPNYAAPEVISGRLYAGP 195
Query: 597 ESDVYCFGVILMELLTGKRGTDD 619
E D++ GVIL LL G DD
Sbjct: 196 EVDIWSSGVILYALLCGTLPFDD 218
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 415 LAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIA 474
L G+ G V G+ VAIK++ + D+ + + L H L+ L G C
Sbjct: 17 LGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTK 75
Query: 475 GKEKLVLLEFMANGDLHRWLHEL 497
+ ++ E+MANG L +L E+
Sbjct: 76 QRPIFIITEYMANGCLLNYLREM 98
>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino(
Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6-
Difluoro-Phenyl)-Amide)
Length = 349
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 83/227 (36%), Gaps = 47/227 (20%)
Query: 404 AATSHFGKESLLAEGRCGPVYRAVLPG-ELHVAIKVLDNAKGIDHDDAVAMFDELSRLKH 462
A + F ES L G VYR G + A+KVL K +D L RL H
Sbjct: 50 ALSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLK--KTVDKKIVRTEIGVLLRLSH 107
Query: 463 PNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHI 522
PN++ L E ++LE + G+L + E +
Sbjct: 108 PNIIKLKEIFETPTEISLVLELVTGGELFDRIVE----------------------KGYY 145
Query: 523 SSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEP---KIAGFGLRN 579
S + + V + + +AYLH G H L ++L A KIA FGL
Sbjct: 146 SERDAADAVKQ------ILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSK 199
Query: 580 IGVKNVGERSENET---C----------GPESDVYCFGVILMELLTG 613
I V ++ T C GPE D++ G+I LL G
Sbjct: 200 IVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCG 246
>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8T|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg-Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI GL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDAGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 89/246 (36%), Gaps = 56/246 (22%)
Query: 457 LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHP 516
L + HPN++ L G C + +++E + GD +L
Sbjct: 166 LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRT-------------------E 206
Query: 517 GAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGF- 575
GA + T ++ A G+ YL H L + L+ E KI+ F
Sbjct: 207 GARLRVK--------TLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFG 258
Query: 576 --------------GLRNIGVKNVGERSENE-TCGPESDVYCFGVILMEL--LTGKRGTD 618
GLR + VK + N ESDV+ FG++L E L +
Sbjct: 259 MSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPN 318
Query: 619 DCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLG 678
+ R+ V++G + D+V ++E C A PG+RP+ +
Sbjct: 319 LSNQQTREFVEKGGRLPCPEL-----CPDAVFRLMEQ------CWAYEPGQRPSFSTIYQ 367
Query: 679 LLKDIR 684
L+ IR
Sbjct: 368 ELQSIR 373
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 51/199 (25%)
Query: 434 VAIKVLD----NAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGD 489
VA+K +D + + ++ V M D +H N++ + + G E V++EF+ G
Sbjct: 102 VAVKKMDLRKQQRRELLFNEVVIMRD----YQHENVVEMYNSYLVGDELWVVMEFLEGGA 157
Query: 490 LHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHH 549
L TD H I++ + + V + L+ LH
Sbjct: 158 L------------------TDIVTHTRMNEEQIAA-----------VCLAVLQALSVLHA 188
Query: 550 VGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS--------------ENETCG 595
G H + + SILL K++ FG K V R G
Sbjct: 189 QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYG 248
Query: 596 PESDVYCFGVILMELLTGK 614
PE D++ G++++E++ G+
Sbjct: 249 PEVDIWSLGIMVIEMVDGE 267
>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBJ|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
Length = 360
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI GL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDRGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 89/246 (36%), Gaps = 56/246 (22%)
Query: 457 LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHP 516
L + HPN++ L G C + +++E + GD +L
Sbjct: 166 LKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRT-------------------E 206
Query: 517 GAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGF- 575
GA + T ++ A G+ YL H L + L+ E KI+ F
Sbjct: 207 GARLRVK--------TLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFG 258
Query: 576 --------------GLRNIGVKNVGERSENE-TCGPESDVYCFGVILMEL--LTGKRGTD 618
GLR + VK + N ESDV+ FG++L E L +
Sbjct: 259 MSREEADGVXAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPN 318
Query: 619 DCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLG 678
+ R+ V++G + D+V ++E C A PG+RP+ +
Sbjct: 319 LSNQQTREFVEKGGRLPCPEL-----CPDAVFRLMEQ------CWAYEPGQRPSFSTIYQ 367
Query: 679 LLKDIR 684
L+ IR
Sbjct: 368 ELQSIR 373
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 51/200 (25%)
Query: 433 HVAIKVLD----NAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANG 488
VA+K++D + + ++ V M D +H N++ + + G+E VL+EF+ G
Sbjct: 72 QVAVKMMDLRKQQRRELLFNEVVIMRD----YQHFNVVEMYKSYLVGEELWVLMEFLQGG 127
Query: 489 DLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLH 548
L + I S + N + V + LAYLH
Sbjct: 128 AL-----------------------------TDIVSQVRLNEEQIATVCEAVLQALAYLH 158
Query: 549 HVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERS--------------ENETC 594
G H + + SILL K++ FG K+V +R
Sbjct: 159 AQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKXLVGTPYWMAPEVISRSLY 218
Query: 595 GPESDVYCFGVILMELLTGK 614
E D++ G++++E++ G+
Sbjct: 219 ATEVDIWSLGIMVIEMVDGE 238
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 107 QSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVK----LSQFSKLMVL 162
+SL ++LS+N K ++ G +PS+Q L LS N ++ K L L L
Sbjct: 360 KSLEFLDLSENLMVEEY-LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 418
Query: 163 DVSNNDLRILPSGFANLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSD 222
D+S N +P K+R L++SS I + +L+ LDVSNN+++ +F
Sbjct: 419 DISRNTFHPMPDSCQWPEKMRFLNLSSTGI--RVVKTCIPQTLEVLDVSNNNLD-SFSLF 475
Query: 223 FPPLSGVKFLNISLNKF 239
P L L IS NK
Sbjct: 476 LPRLQE---LYISRNKL 489
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 202 LHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKF 239
L SL++LD+S+N ++ S F PLS +K+LN+ N +
Sbjct: 99 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 136
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 30/158 (18%)
Query: 81 NMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVL 140
++ L +DLS+N L WF SL +NL N + T+G FP++
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-QTLGV-----TSLFPNLT-- 149
Query: 141 NLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKI----SGNI 196
NL + R N+ S+ ++ FA L+ L L+I + + S ++
Sbjct: 150 NLQTLRIGNVETFSEIRRI---------------DFAGLTSLNELEIKALSLRNYQSQSL 194
Query: 197 KPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNI 234
K + +H L L +S ++ +D LS V++L +
Sbjct: 195 KSIRDIHHLT-LHLSESAFLLEIFADI--LSSVRYLEL 229
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 68/179 (37%), Gaps = 39/179 (21%)
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
T R A+ VA G+ YL H L ++LLA KI FGL +N
Sbjct: 116 TLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQ 175
Query: 592 ET-------CGPE----------SDVYCFGVILMELLT-------GKRGTDDCVKWVRKL 627
E C PE SD + FGV L E+ T G G+ + + K+
Sbjct: 176 EHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS----QILHKI 231
Query: 628 VKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPS 686
KEG +L + + + ++ V C A P RPT + L + +P+
Sbjct: 232 DKEGE---------RLPRPEDCPQDIYNVMVQ--CWAHKPEDRPTFVALRDFLLEAQPT 279
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 68/179 (37%), Gaps = 39/179 (21%)
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
T R A+ VA G+ YL H L ++LLA KI FGL +N
Sbjct: 112 TLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQ 171
Query: 592 ET-------CGPE----------SDVYCFGVILMELLT-------GKRGTDDCVKWVRKL 627
E C PE SD + FGV L E+ T G G+ + + K+
Sbjct: 172 EHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS----QILHKI 227
Query: 628 VKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPS 686
KEG +L + + + ++ V C A P RPT + L + +P+
Sbjct: 228 DKEGE---------RLPRPEDCPQDIYNVMVQ--CWAHKPEDRPTFVALRDFLLEAQPT 275
>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBG|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
pdb|3OC1|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI GL R+ + G + PE
Sbjct: 134 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDGGLARHTDDEMTGYVATRWYRAPEI 193
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLVKEGAGGDALDFRLK 642
D++ G I+ ELLTG+ GTD D +K + +LV G G L LK
Sbjct: 194 MLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLV--GTPGAEL---LK 248
Query: 643 LGSGDSVAEMVESL 656
S +S ++SL
Sbjct: 249 KISSESARNYIQSL 262
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 68/179 (37%), Gaps = 39/179 (21%)
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
T R A+ VA G+ YL H L ++LLA KI FGL +N
Sbjct: 112 TLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQ 171
Query: 592 ET-------CGPE----------SDVYCFGVILMELLT-------GKRGTDDCVKWVRKL 627
E C PE SD + FGV L E+ T G G+ + + K+
Sbjct: 172 EHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS----QILHKI 227
Query: 628 VKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPS 686
KEG +L + + + ++ V C A P RPT + L + +P+
Sbjct: 228 DKEGE---------RLPRPEDCPQDIYNVMVQ--CWAHKPEDRPTFVALRDFLLEAQPT 275
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 18/110 (16%)
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
HI S K + A + GL +LH G + L +ILL + KIA FG+
Sbjct: 108 HIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKE 167
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTGK 614
+ +G+ N CG PE D + FGV+L E+L G+
Sbjct: 168 NM--LGDAKTNXFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQ 215
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 83/213 (38%), Gaps = 52/213 (24%)
Query: 427 VLPGELHVAIKVLD-NAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFM 485
+L GE+ VAIK++D N G D + L L+H ++ L + ++LE+
Sbjct: 32 ILTGEM-VAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVLEYC 90
Query: 486 ANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLA 545
G+L ++ S D S E+T V R + +A
Sbjct: 91 PGGELFDYI------------ISQDRL-----------SEEETRVVFRQ-----IVSAVA 122
Query: 546 YLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN-ETC---------- 594
Y+H G H L ++L E + K+ FGL K G + + +TC
Sbjct: 123 YVHSQGYAHRDLKPENLLFDEYHKLKLIDFGL---CAKPKGNKDYHLQTCCGSLAYAAPE 179
Query: 595 --------GPESDVYCFGVILMELLTGKRGTDD 619
G E+DV+ G++L L+ G DD
Sbjct: 180 LIQGKSYLGSEADVWSMGILLYVLMCGFLPFDD 212
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 107 QSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVK----LSQFSKLMVL 162
+SL ++LS+N K ++ G +PS+Q L LS N ++ K L L L
Sbjct: 334 KSLEFLDLSENLMVEEY-LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392
Query: 163 DVSNNDLRILPSGFANLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSD 222
D+S N +P K+R L++SS I + +L+ LDVSNN+++ +F
Sbjct: 393 DISRNTFHPMPDSCQWPEKMRFLNLSSTGI--RVVKTCIPQTLEVLDVSNNNLD-SFSLF 449
Query: 223 FPPLSGVKFLNISLNKF 239
P L L IS NK
Sbjct: 450 LPRLQE---LYISRNKL 463
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 202 LHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKF 239
L SL++LD+S+N ++ S F PLS +K+LN+ N +
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 30/158 (18%)
Query: 81 NMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVL 140
++ L +DLS+N L WF SL +NL N + T+G FP++
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-QTLGV-----TSLFPNLT-- 123
Query: 141 NLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKI----SGNI 196
NL + R N+ S+ ++ FA L+ L L+I + + S ++
Sbjct: 124 NLQTLRIGNVETFSEIRRI---------------DFAGLTSLNELEIKALSLRNYQSQSL 168
Query: 197 KPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNI 234
K + +H L L +S ++ +D LS V++L +
Sbjct: 169 KSIRDIHHLT-LHLSESAFLLEIFADI--LSSVRYLEL 203
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 91/243 (37%), Gaps = 54/243 (22%)
Query: 400 KDLIAATSHFGKESL---LAEGRCGPVYRA--VLPGELHVAIKVLDNAKGIDHDDAVAMF 454
K +A +H G + L EG G V A G+ VA+K++ N K + D
Sbjct: 3 KSSLADGAHIGNYQIVKTLGEGSFGKVKLAYHTTTGQ-KVALKII-NKKVLAKSDMQGRI 60
Query: 455 DE----LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTD 510
+ L L+HP+++ L + E ++++E+ N +
Sbjct: 61 EREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGN----------------------E 98
Query: 511 TWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEP 570
+D+ I +K + R + + Y H H L ++LL E L
Sbjct: 99 LFDY-------IVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNV 151
Query: 571 KIAGFGLRNI-----------GVKNVGE---RSENETCGPESDVYCFGVILMELLTGKRG 616
KIA FGL NI G N S GPE DV+ GVIL +L +
Sbjct: 152 KIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLP 211
Query: 617 TDD 619
DD
Sbjct: 212 FDD 214
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 68/179 (37%), Gaps = 39/179 (21%)
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
T R A+ VA G+ YL H L ++LLA KI FGL +N
Sbjct: 122 TLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQ 181
Query: 592 ET-------CGPE----------SDVYCFGVILMELLT-------GKRGTDDCVKWVRKL 627
E C PE SD + FGV L E+ T G G+ + + K+
Sbjct: 182 EHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS----QILHKI 237
Query: 628 VKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPS 686
KEG +L + + + ++ V C A P RPT + L + +P+
Sbjct: 238 DKEGE---------RLPRPEDCPQDIYNVMVQ--CWAHKPEDRPTFVALRDFLLEAQPT 285
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 79/184 (42%), Gaps = 15/184 (8%)
Query: 63 LNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGT 122
L+L + ++ I F +N+ LH++ L NN + PG F L ++ LSKN+
Sbjct: 57 LDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 123 IGFKPTSRNGPFPSVQVLNLSSNRFTNLVK--LSQFSKLMVLDVSNNDLR---ILPSGFA 177
P ++Q L + N T + K + ++++V+++ N L+ I F
Sbjct: 116 PEKMPK-------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 178 NLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLN 237
+ KL ++ I+ I+ P SL L + N + + L+ + L +S N
Sbjct: 169 GMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 238 KFTG 241
+
Sbjct: 227 SISA 230
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+L H N++
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKLNHQNIV 97
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +LLE MA GDL +L E
Sbjct: 98 RCIGVSLQSLPRFILLELMAGGDLKSFLRE 127
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 79/184 (42%), Gaps = 15/184 (8%)
Query: 63 LNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGT 122
L+L + ++ I F +N+ LH++ L NN + PG F L ++ LSKN+
Sbjct: 57 LDLQNNKITEIKDGDF-KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 123 IGFKPTSRNGPFPSVQVLNLSSNRFTNLVK--LSQFSKLMVLDVSNNDLR---ILPSGFA 177
P ++Q L + N T + K + ++++V+++ N L+ I F
Sbjct: 116 PEKMPK-------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168
Query: 178 NLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLN 237
+ KL ++ I+ I+ P SL L + N + + L+ + L +S N
Sbjct: 169 GMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 238 KFTG 241
+
Sbjct: 227 SISA 230
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 68/179 (37%), Gaps = 39/179 (21%)
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
T R A+ VA G+ YL H L ++LLA KI FGL +N
Sbjct: 122 TLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQ 181
Query: 592 ET-------CGPE----------SDVYCFGVILMELLT-------GKRGTDDCVKWVRKL 627
E C PE SD + FGV L E+ T G G+ + + K+
Sbjct: 182 EHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS----QILHKI 237
Query: 628 VKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPS 686
KEG +L + + + ++ V C A P RPT + L + +P+
Sbjct: 238 DKEGE---------RLPRPEDCPQDIYNVMVQ--CWAHKPEDRPTFVALRDFLLEAQPT 285
>pdb|2XUU|A Chain A, Crystal Structure Of A Dap-Kinase 1 Mutant
Length = 334
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E
Sbjct: 54 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE------ 107
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 108 ----------------KESLTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 145
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNVG--------ERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 146 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPAFVAPEIVNYEPLGLEADMWSIGV 205
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 206 ITYILLSG 213
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 91/243 (37%), Gaps = 54/243 (22%)
Query: 400 KDLIAATSHFGKESL---LAEGRCGPVYRA--VLPGELHVAIKVLDNAKGIDHDDAVAMF 454
K +A +H G + L EG G V A G+ VA+K++ N K + D
Sbjct: 4 KSSLADGAHIGNYQIVKTLGEGSFGKVKLAYHTTTGQ-KVALKII-NKKVLAKSDMQGRI 61
Query: 455 DE----LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTD 510
+ L L+HP+++ L + E ++++E+ N +
Sbjct: 62 EREISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGN----------------------E 99
Query: 511 TWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEP 570
+D+ I +K + R + + Y H H L ++LL E L
Sbjct: 100 LFDY-------IVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNV 152
Query: 571 KIAGFGLRNI-----------GVKNVGE---RSENETCGPESDVYCFGVILMELLTGKRG 616
KIA FGL NI G N S GPE DV+ GVIL +L +
Sbjct: 153 KIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLP 212
Query: 617 TDD 619
DD
Sbjct: 213 FDD 215
>pdb|2X0G|A Chain A, X-ray Structure Of A Dap-kinase Calmodulin Complex
Length = 334
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E
Sbjct: 54 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE------ 107
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 108 ----------------KESLTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 145
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNV--------GERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 146 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV 205
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 206 ITYILLSG 213
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 90/240 (37%), Gaps = 54/240 (22%)
Query: 403 IAATSHFGKESL---LAEGRCGPVYRA--VLPGELHVAIKVLDNAKGIDHDDAVAMFDE- 456
+A +H G + L EG G V A G+ VA+K++ N K + D +
Sbjct: 1 LADGAHIGNYQIVKTLGEGSFGKVKLAYHTTTGQ-KVALKII-NKKVLAKSDMQGRIERE 58
Query: 457 ---LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWD 513
L L+HP+++ L + E ++++E+ N + +D
Sbjct: 59 ISYLRLLRHPHIIKLYDVIKSKDEIIMVIEYAGN----------------------ELFD 96
Query: 514 HHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIA 573
+ I +K + R + + Y H H L ++LL E L KIA
Sbjct: 97 Y-------IVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIA 149
Query: 574 GFGLRNI-----------GVKNVGE---RSENETCGPESDVYCFGVILMELLTGKRGTDD 619
FGL NI G N S GPE DV+ GVIL +L + DD
Sbjct: 150 DFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD 209
>pdb|2BUJ|A Chain A, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
pdb|2BUJ|B Chain B, Crystal Structure Of The Human Serine-Threonine Kinase 16
In Complex With Staurosporine
Length = 317
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 34/158 (21%)
Query: 435 AIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI----AGKEKLVLLEFMANGDL 490
A+K + + D ++A D HPN+L L YC+ A E +LL F G L
Sbjct: 58 ALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTL 117
Query: 491 HRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIA---IGVARGLAYL 547
+ L +K N++T +I +G+ RGL +
Sbjct: 118 WNEIERLK---------------------------DKGNFLTEDQILWLLLGICRGLEAI 150
Query: 548 HHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV 585
H G H L ++ILL + +P + G N +V
Sbjct: 151 HAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHV 188
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 134 FPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKIS 193
+ V+VL+L+ T L L Q + LD+S+N LR LP A L L L S +
Sbjct: 440 YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499
Query: 194 GNIKPVSFLHSLKYLDVSNNSMNGT 218
N+ V+ L L+ L + NN + +
Sbjct: 500 -NVDGVANLPRLQELLLCNNRLQQS 523
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 134 FPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKIS 193
+ V+VL+L+ T L L Q + LD+S+N LR LP A L L L S +
Sbjct: 440 YADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499
Query: 194 GNIKPVSFLHSLKYLDVSNNSMNGT 218
N+ V+ L L+ L + NN + +
Sbjct: 500 -NVDGVANLPRLQELLLCNNRLQQS 523
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+L H N++
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKLNHQNIV 111
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +LLE MA GDL +L E
Sbjct: 112 RCIGVSLQSLPRFILLELMAGGDLKSFLRE 141
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 14 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 68
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 69 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 103
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 104 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 159
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 160 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 208
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 12 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 66
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 67 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 101
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 102 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 157
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 158 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 206
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 11 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 65
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 66 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 100
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 101 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 156
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 157 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 205
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 13 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 67
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 68 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 102
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 103 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 158
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 159 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 207
>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha
pdb|3OHT|B Chain B, Crystal Structure Of Salmo Salar P38alpha
Length = 389
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE- 597
+ RGL Y+H H L S++ + E E KI FGL R+ + G + PE
Sbjct: 163 ILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEI 222
Query: 598 ----------SDVYCFGVILMELLTGKR---GTD 618
D++ G I+ ELLTG+ GTD
Sbjct: 223 MLNWMHYNMTVDIWSVGCIMAELLTGRTLFPGTD 256
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 107/274 (39%), Gaps = 66/274 (24%)
Query: 425 RAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLAGYCIAGKEKLVL 481
R +L G+ VA++++D + ++ +F E+ +K HPN++ L K ++
Sbjct: 34 RHILTGK-EVAVRIIDKTQ-LNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLV 91
Query: 482 LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVA 541
+E+ + G++ +L +H EK +I V
Sbjct: 92 MEYASGGEVFDYL------------------------VAHGRMKEKEARAKFRQIVSAVQ 127
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENETC------- 594
Y H H L ++LL + KIA FG N + +E C
Sbjct: 128 ----YCHQKFIVHRDLKAENLLLDADMNIKIADFGFSN---EFTFGNKLDEFCGSPPYAA 180
Query: 595 ----------GPESDVYCFGVILMELLTGKRGTD-DCVKWVRKLVKEGAGGDALDFRLKL 643
GPE DV+ GVIL L++G D +K +R+ V G +R+
Sbjct: 181 PELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGK------YRIPF 234
Query: 644 GSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
++ E+L +L +P KR T++Q++
Sbjct: 235 ----YMSTDCENLLKKFLIL--NPSKRGTLEQIM 262
>pdb|2XZS|A Chain A, Death Associated Protein Kinase 1 Residues 1-312
pdb|2XZS|B Chain B, Death Associated Protein Kinase 1 Residues 1-312
Length = 312
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E
Sbjct: 54 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE------ 107
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 108 ----------------KESLTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 145
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNV--------GERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 146 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV 205
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 206 ITYILLSG 213
>pdb|3GU4|A Chain A, Crystal Structure Of Dapkq23v-Amppnp
pdb|3GU5|A Chain A, Crystal Structure Of Dapkq23v-Amppnp-Mg2+
pdb|3GU6|A Chain A, Crystal Structure Of Dapkq23v-Adp
pdb|3GU7|A Chain A, Crystal Structure Of Dapkq23v-Adp-Mg2+
Length = 295
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E
Sbjct: 54 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE------ 107
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 108 ----------------KESLTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 145
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNV--------GERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 146 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV 205
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 206 ITYILLSG 213
>pdb|1IG1|A Chain A, 1.8a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mn.
pdb|1JKL|A Chain A, 1.6a X-Ray Structure Of Binary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue
pdb|1JKS|A Chain A, 1.5a X-Ray Structure Of Apo Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|A Chain A, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKT|B Chain B, Tetragonal Crystal Form Of A Catalytic Domain Of
Death-Associated Protein Kinase
pdb|1JKK|A Chain A, 2.4a X-Ray Structure Of Ternary Complex Of A Catalytic
Domain Of Death-Associated Protein Kinase With Atp
Analogue And Mg.
pdb|3F5G|A Chain A, Crystal Structure Of Death Associated Protein Kinase In
Complex With Adp And Mg2+
pdb|3EH9|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Adp
pdb|3EHA|A Chain A, Crystal Structure Of Death Associated Protein Kinase
Complexed With Amppnp
Length = 294
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E
Sbjct: 53 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE------ 106
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 107 ----------------KESLTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 144
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNV--------GERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 145 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV 204
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 205 ITYILLSG 212
>pdb|2W4K|A Chain A, X-Ray Structure Of A Dap-Kinase 2-302
Length = 302
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E
Sbjct: 54 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE------ 107
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 108 ----------------KESLTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 145
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNVG--------ERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 146 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV 205
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 206 ITYILLSG 213
>pdb|1P4F|A Chain A, Death Associated Protein Kinase Catalytic Domain With
Bound Inhibitor Fragment
Length = 293
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E
Sbjct: 53 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE------ 106
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 107 ----------------KESLTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 144
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNV--------GERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 145 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV 204
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 205 ITYILLSG 212
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 42/213 (19%)
Query: 60 IRELNLSSRNLSGIISWKF-LRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNR 118
+REL+LS ++ LRN+S L S++LS N F L ++L+ R
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 119 FGGTIGFKPTSRNGPF---------------------------PSVQVLNLSSNRFT--N 149
K PF P++Q LNL N F N
Sbjct: 412 L------KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465
Query: 150 LVK---LSQFSKLMVLDVSNNDLR-ILPSGFANLSKLRHLDISSCKI-SGNIKPVSFLHS 204
+ K L +L +L +S DL I F +L + H+D+S ++ S +I+ +S L
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525
Query: 205 LKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLN 237
+ YL++++N ++ PS P LS + +N+ N
Sbjct: 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 13/87 (14%)
Query: 136 SVQVLNLSSNRFTNLVK--LSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISS---- 189
SV+ +NL + F N+ FS L LD++ L LPSG LS L+ L +S+
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE 314
Query: 190 --CKISGNIKPVSFLHSLKYLDVSNNS 214
C+IS + P SL +L + N+
Sbjct: 315 NLCQISASNFP-----SLTHLSIKGNT 336
>pdb|3DFC|B Chain B, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain With
Amppnp
pdb|3DGK|A Chain A, Crystal Structure Of A Glycine-Rich Loop Mutant Of The
Death Associated Protein Kinase Catalytic Domain
Length = 295
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E
Sbjct: 54 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE------ 107
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 108 ----------------KESLTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 145
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNV--------GERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 146 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV 205
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 206 ITYILLSG 213
>pdb|3F5U|A Chain A, Crystal Structure Of The Death Associated Protein Kinase
In Complex With Amppnp And Mg2+
Length = 295
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E
Sbjct: 54 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE------ 107
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 108 ----------------KESLTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 145
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNV--------GERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 146 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV 205
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 206 ITYILLSG 213
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 33 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 87
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 88 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 122
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 123 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 178
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 179 LSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 227
>pdb|1WVW|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVX|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
pdb|1WVY|A Chain A, Crystal Structures Of Kinase Domain Of Dap Kinase In
Complex With Small Molecular Inhibitors
Length = 278
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E
Sbjct: 54 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE------ 107
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 108 ----------------KESLTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 145
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNV--------GERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 146 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV 205
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 206 ITYILLSG 213
>pdb|2YAK|A Chain A, Structure Of Death-Associated Protein Kinase 1 (Dapk1) In
Complex With A Ruthenium Octasporine Ligand (Osv)
pdb|2Y4P|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|2Y4P|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain
pdb|3ZXT|A Chain A, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|B Chain B, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|C Chain C, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
pdb|3ZXT|D Chain D, Dimeric Structure Of Dapk-1 Catalytic Domain In Complex
With Amppcp-Mg
Length = 285
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E
Sbjct: 54 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE------ 107
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 108 ----------------KESLTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 145
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNV--------GERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 146 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV 205
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 206 ITYILLSG 213
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 33 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 87
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 88 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 122
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 123 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 178
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 179 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 227
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 12 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 69
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L++ + M G L ++ E H
Sbjct: 70 YVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGXLLDYVRE-----------------H 111
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 112 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 161
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 162 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 215
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 78/207 (37%), Gaps = 43/207 (20%)
Query: 429 PGELHVAIKVLDNAK-GIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMAN 487
P + VAIK ++ K D+ + +S+ HPN++ + E ++++ ++
Sbjct: 38 PKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSG 97
Query: 488 GDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYL 547
G + D H G H S + T I V GL YL
Sbjct: 98 GSV------------------LDIIKHIVAKGEHKSGV--LDESTIATILREVLEGLEYL 137
Query: 548 HHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENET----------CGPE 597
H G H + +ILL E +IA FG+ + G+ + N+ PE
Sbjct: 138 HKNGQIHRDVKAGNILLGEDGSVQIADFGVSAF-LATGGDITRNKVRKTFVGTPCWMAPE 196
Query: 598 -----------SDVYCFGVILMELLTG 613
+D++ FG+ +EL TG
Sbjct: 197 VMEQVRGYDFKADIWSFGITAIELATG 223
>pdb|2W4J|A Chain A, X-Ray Structure Of A Dap-Kinase 2-277
Length = 277
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E
Sbjct: 54 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAE------ 107
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 108 ----------------KESLTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 145
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNV--------GERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 146 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV 205
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 206 ITYILLSG 213
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMF---DELSRLK 461
FGK +L EG V VL EL AIK+L+ I + + D +SRL
Sbjct: 18 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 72
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 73 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 107
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 108 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 163
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 164 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 212
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+ H N++
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYS-EQDELDFLMEALIISKFNHQNIV 111
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +LLE MA GDL +L E
Sbjct: 112 RCIGVSLQSLPRFILLELMAGGDLKSFLRE 141
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 83/216 (38%), Gaps = 46/216 (21%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL + G++H + + S L+HPN+L L
Sbjct: 20 LGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 78
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 79 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SRFDEQRTAT 116
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL--------RNIG 581
++T +A L+Y H H + ++LL + E KIA FG R+
Sbjct: 117 YITE------LANALSYCHSKRVIHRDIKPENLLLGSNGELKIADFGWSVHAPSSRRDTL 170
Query: 582 VKNVG----ERSENETCGPESDVYCFGVILMELLTG 613
+ E E + D++ GV+ E L G
Sbjct: 171 CGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 206
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 107/273 (39%), Gaps = 64/273 (23%)
Query: 425 RAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLAGYCIAGKEKLVL 481
R +L G+ VA+K++D + ++ +F E+ +K HPN++ L K ++
Sbjct: 34 RHILTGK-EVAVKIIDKTQ-LNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLV 91
Query: 482 LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVA 541
+E+ + G++ +L +H EK +I V
Sbjct: 92 MEYASGGEVFDYL------------------------VAHGRMKEKEARAKFRQIVSAVQ 127
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN---------- 591
Y H H L ++LL + KIA FG N G + +
Sbjct: 128 ----YCHQKFIVHRDLKAENLLLDADMNIKIADFGFSN--EFTFGNKLDTFCGSPPYAAP 181
Query: 592 ------ETCGPESDVYCFGVILMELLTGKRGTD-DCVKWVRKLVKEGAGGDALDFRLKLG 644
+ GPE DV+ GVIL L++G D +K +R+ V G +R+
Sbjct: 182 ELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGK------YRIPF- 234
Query: 645 SGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
++ E+L +L +P KR T++Q++
Sbjct: 235 ---YMSTDCENLLKKFLIL--NPSKRGTLEQIM 262
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 46/216 (21%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL ++ G++H + + S L+HPN+L +
Sbjct: 23 LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREI-EIQSHLRHPNILRMY 81
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
Y K ++LEF G+L++ L + G + + +T +
Sbjct: 82 NYFHDRKRIYLMLEFAPRGELYKELQK--HGRFDEQRSATFMEE---------------- 123
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG-------LRNIGV 582
+A L Y H H + ++L+ E KIA FG LR +
Sbjct: 124 ----------LADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRXM 173
Query: 583 KNV-----GERSENETCGPESDVYCFGVILMELLTG 613
E E +T + D++C GV+ E L G
Sbjct: 174 CGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVG 209
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 70/165 (42%), Gaps = 8/165 (4%)
Query: 124 GFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKL---MVLDVSNNDLR-ILPSGFANL 179
G K R+ P + ++L L+ N + F +L + L++ N L I P+ F
Sbjct: 19 GLKEIPRDIPLHTTELL-LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 180 SKLRHLDISSCKISGNIKPVSFL--HSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLN 237
S ++ L + KI I FL H LK L++ +N ++ P F L+ + LN++ N
Sbjct: 78 SHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Query: 238 KFTGFVGHDKYQKFGKSAFIQGGSFVFDTTKTPRPSNNHIMPHVD 282
F + ++ + + GG+ R +PH +
Sbjct: 137 PFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 46 LKPTNLNGSNP-----STPIRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVP 100
LK L G P ++ I+EL L + I + FL + +L +++L +N + +P
Sbjct: 61 LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL-GLHQLKTLNLYDNQISCVMP 119
Query: 101 GWFWSTQSLTQVNLSKNRF 119
G F SLT +NL+ N F
Sbjct: 120 GSFEHLNSLTSLNLASNPF 138
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE--- 597
RGL Y+H G H L S++ + E E +I FGL R + G + PE
Sbjct: 134 RGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADEEMTGYVATRWYRAPEIML 193
Query: 598 --------SDVYCFGVILMELLTGK 614
D++ G I+ ELL GK
Sbjct: 194 NWMHYNQTVDIWSVGCIMAELLQGK 218
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 46/216 (21%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL ++ G++H + + S L+HPN+L +
Sbjct: 22 LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREI-EIQSHLRHPNILRMY 80
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
Y K ++LEF G+L++ L + G + + +T +
Sbjct: 81 NYFHDRKRIYLMLEFAPRGELYKELQK--HGRFDEQRSATFMEE---------------- 122
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG-------LRNIGV 582
+A L Y H H + ++L+ E KIA FG LR +
Sbjct: 123 ----------LADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRXM 172
Query: 583 KNV-----GERSENETCGPESDVYCFGVILMELLTG 613
E E +T + D++C GV+ E L G
Sbjct: 173 CGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVG 208
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 15/192 (7%)
Query: 32 SKAFSSVSTFNISWLKPTNLNGSNPS-----TPIRELNLSSRNLSGIISWKFLRNMSELH 86
+ +F S I WL L G + + T + +L+LS ++ R + LH
Sbjct: 48 AASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLH 107
Query: 87 SIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNR 146
++ L L+ PG F +L + L N P + ++ L L NR
Sbjct: 108 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQAL----PDNTFRDLGNLTHLFLHGNR 163
Query: 147 FTNLVKLSQFSKLMVLDV----SNNDLRILPSGFANLSKLRHLDISSCKISGNIKPVSF- 201
+ V F L LD N+ R+ P F +L +L L + + +S V
Sbjct: 164 IPS-VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVP 222
Query: 202 LHSLKYLDVSNN 213
L SL+YL +++N
Sbjct: 223 LRSLQYLRLNDN 234
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 88/236 (37%), Gaps = 54/236 (22%)
Query: 407 SHFGKESL---LAEGRCGPVYRA--VLPGELHVAIKVLDNAKGIDHDDAVAMFDE----L 457
+H G + L EG G V A G+ VA+K++ N K + D + L
Sbjct: 1 AHIGNYQIVKTLGEGSFGKVKLAYHTTTGQ-KVALKII-NKKVLAKSDMQGRIEREISYL 58
Query: 458 SRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPG 517
L+HP+++ L + E ++++E+ N + +D+
Sbjct: 59 RLLRHPHIIKLYDVIKSKDEIIMVIEYAGN----------------------ELFDY--- 93
Query: 518 AGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
I +K + R + + Y H H L ++LL E L KIA FGL
Sbjct: 94 ----IVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGL 149
Query: 578 RNI-----------GVKNVGE---RSENETCGPESDVYCFGVILMELLTGKRGTDD 619
NI G N S GPE DV+ GVIL +L + DD
Sbjct: 150 SNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD 205
>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated
Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2
Chain)
Length = 276
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 47/218 (21%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLAGYCIAGKEKLVLLEFMANGDL 490
VA+K+L+ K D + E+ LK HP+++ L + +++E+++ G+L
Sbjct: 39 VAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGEL 98
Query: 491 HRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHV 550
+ I + + R+ + + Y H
Sbjct: 99 FDY----------------------------ICKHGRVEEMEARRLFQQILSAVDYCHRH 130
Query: 551 GSTHGHLVTSSILLAESLEPKIAGFGLRNI-----------GVKNVGE---RSENETCGP 596
H L ++LL + KIA FGL N+ G N S GP
Sbjct: 131 MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGP 190
Query: 597 ESDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGG 634
E D++ GVIL LL G DD + V L K+ GG
Sbjct: 191 EVDIWSCGVILYALLCGTLPFDD--EHVPTLFKKIRGG 226
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 34 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 88
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 89 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 123
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 124 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 179
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 180 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 34/167 (20%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL + G++H + + S L+HPN+L L
Sbjct: 20 LGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREV-EIQSHLRHPNILRLY 78
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
GY ++LE+ G ++R L +L S
Sbjct: 79 GYFHDATRVYLILEYAPLGTVYRELQKL----------------------SRFDEQRTAT 116
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG 576
++T +A L+Y H H + ++LL + E KIA FG
Sbjct: 117 YITE------LANALSYCHSKRVIHRDIKPENLLLGSNGELKIADFG 157
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 8/155 (5%)
Query: 85 LHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSS 144
L ++L+ N + PG F + +L + L NR + P ++ L++S
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR----LKLIPLGVFTGLSNLTKLDISE 113
Query: 145 NRFTNLVK--LSQFSKLMVLDVSNNDL-RILPSGFANLSKLRHLDISSCKISG-NIKPVS 200
N+ L+ L L+V +NDL I F+ L+ L L + C ++ + +S
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173
Query: 201 FLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNIS 235
LH L L + + ++N F L +K L IS
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 78/207 (37%), Gaps = 43/207 (20%)
Query: 429 PGELHVAIKVLDNAK-GIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMAN 487
P + VAIK ++ K D+ + +S+ HPN++ + E ++++ ++
Sbjct: 33 PKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSG 92
Query: 488 GDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYL 547
G + D H G H S + T I V GL YL
Sbjct: 93 GSV------------------LDIIKHIVAKGEHKSGV--LDESTIATILREVLEGLEYL 132
Query: 548 HHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENET----------CGPE 597
H G H + +ILL E +IA FG+ + G+ + N+ PE
Sbjct: 133 HKNGQIHRDVKAGNILLGEDGSVQIADFGVSAF-LATGGDITRNKVRKTFVGTPCWMAPE 191
Query: 598 -----------SDVYCFGVILMELLTG 613
+D++ FG+ +EL TG
Sbjct: 192 VMEQVRGYDFKADIWSFGITAIELATG 218
>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human
5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant
(T172d)
pdb|3AQV|A Chain A, Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase
Domain (T172d) Complexed With Compound C
Length = 276
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 47/218 (21%)
Query: 434 VAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLAGYCIAGKEKLVLLEFMANGDL 490
VA+K+L+ K D + E+ LK HP+++ L + +++E+++ G+L
Sbjct: 39 VAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVMEYVSGGEL 98
Query: 491 HRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHV 550
+ I + + R+ + + Y H
Sbjct: 99 FDY----------------------------ICKHGRVEEMEARRLFQQILSAVDYCHRH 130
Query: 551 GSTHGHLVTSSILLAESLEPKIAGFGLRNI-----------GVKNVGE---RSENETCGP 596
H L ++LL + KIA FGL N+ G N S GP
Sbjct: 131 MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRDSCGSPNYAAPEVISGRLYAGP 190
Query: 597 ESDVYCFGVILMELLTGKRGTDDCVKWVRKLVKEGAGG 634
E D++ GVIL LL G DD + V L K+ GG
Sbjct: 191 EVDIWSCGVILYALLCGTLPFDD--EHVPTLFKKIRGG 226
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 108/271 (39%), Gaps = 60/271 (22%)
Query: 425 RAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLAGYCIAGKEKLVL 481
R +L G+ VA+K++D + ++ +F E+ +K HPN++ L K ++
Sbjct: 34 RHILTGK-EVAVKIIDKTQ-LNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLV 91
Query: 482 LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVA 541
+E+ + G++ +L +H EK +I V
Sbjct: 92 MEYASGGEVFDYL------------------------VAHGRMKEKEARAKFRQIVSAVQ 127
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRN---IGVK----------NVGER 588
Y H H L ++LL + KIA FG N G K E
Sbjct: 128 ----YCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPEL 183
Query: 589 SENETC-GPESDVYCFGVILMELLTGKRGTD-DCVKWVRKLVKEGAGGDALDFRLKLGSG 646
+ + GPE DV+ GVIL L++G D +K +R+ V G +R+
Sbjct: 184 FQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGK------YRIPF--- 234
Query: 647 DSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
++ E+L +L +P KR T++Q++
Sbjct: 235 -YMSTDCENLLKKFLIL--NPSKRGTLEQIM 262
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 36 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 90
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 91 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 125
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 126 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 181
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 182 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 34 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 88
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 89 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 123
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 124 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 179
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 180 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228
>pdb|2Y0A|A Chain A, Structure Of Dapk1 Construct Residues 1-304
Length = 326
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 45/188 (23%)
Query: 443 KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEP 502
+G+ +D L ++HPN++ L + +++LE +A G+L +L E +
Sbjct: 54 RGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKES--- 110
Query: 503 NVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSI 562
++ E T ++ + + G+ YLH + H L +I
Sbjct: 111 -------------------LTEEEATEFLKQ------ILNGVYYLHSLQIAHFDLKPENI 145
Query: 563 LLAESLEP----KIAGFGLR---NIG--VKNV--------GERSENETCGPESDVYCFGV 605
+L + P KI FGL + G KN+ E E G E+D++ GV
Sbjct: 146 MLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGV 205
Query: 606 ILMELLTG 613
I LL+G
Sbjct: 206 ITYILLSG 213
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 17/98 (17%)
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
T R A+ VA G+ YL H L ++LLA KI FGL +N
Sbjct: 112 TLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQ 171
Query: 592 ET-------CGPE----------SDVYCFGVILMELLT 612
E C PE SD + FGV L E+ T
Sbjct: 172 EHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFT 209
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 84/216 (38%), Gaps = 46/216 (21%)
Query: 415 LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFDELSRLKHPNLLPLA 469
L +G+ G VY A + +A+KVL ++ G++H + + S L+HPN+L +
Sbjct: 22 LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREI-EIQSHLRHPNILRMY 80
Query: 470 GYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTN 529
Y K ++LEF G+L++ L + +D A
Sbjct: 81 NYFHDRKRIYLMLEFAPRGELYKELQK------------HGRFDEQRSAT---------- 118
Query: 530 WVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG-------LRNIGV 582
+A L Y H H + ++L+ E KIA FG LR +
Sbjct: 119 ------FMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRXM 172
Query: 583 KNV-----GERSENETCGPESDVYCFGVILMELLTG 613
E E +T + D++C GV+ E L G
Sbjct: 173 CGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVG 208
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 34 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 88
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 89 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 123
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 124 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 179
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 180 LSPESKQARANAFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 37 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 91
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 92 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 126
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 127 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 182
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 183 LSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 231
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+ H N++
Sbjct: 79 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIV 137
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +LLE MA GDL +L E
Sbjct: 138 RCIGVSLQSLPRFILLELMAGGDLKSFLRE 167
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 17/98 (17%)
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN 591
T R A+ VA G+ YL H L ++LLA KI FGL +N
Sbjct: 116 TLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQ 175
Query: 592 ET-------CGPE----------SDVYCFGVILMELLT 612
E C PE SD + FGV L E+ T
Sbjct: 176 EHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFT 213
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 36 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 90
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 91 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 125
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 126 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 181
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 182 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+ H N++
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIV 97
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +LLE MA GDL +L E
Sbjct: 98 RCIGVSLQSLPRFILLELMAGGDLKSFLRE 127
>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
pdb|3LMG|B Chain B, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
Length = 344
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 50/232 (21%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVA-MFDE 456
I + K +L G G V++ V E + V IKV+++ G AV
Sbjct: 27 IFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLA 86
Query: 457 LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHP 516
+ L H +++ L G C +LV +++ G L D H
Sbjct: 87 IGSLDHAHIVRLLGLCPGSSLQLVT-QYLPLGSL------------------LDHVRQHR 127
Query: 517 GAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG 576
GA + NW + +A+G+ YL G H +L ++LL + ++A FG
Sbjct: 128 GA---LGPQLLLNW------GVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFG 178
Query: 577 LRNIGVKNVGERSENETCGP----------------ESDVYCFGVILMELLT 612
+ ++ + + +E P +SDV+ +GV + EL+T
Sbjct: 179 VADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMT 230
>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase
Length = 353
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
Query: 524 SPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGV 582
S EK ++ + +GL Y+H G H L ++ + E E KI FGL R+
Sbjct: 124 SEEKIQYLVYQML-----KGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADA 178
Query: 583 KNVGERSENETCGPE-----------SDVYCFGVILMELLTGK 614
+ G PE D++ G I+ E+LTGK
Sbjct: 179 EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK 221
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+ H N++
Sbjct: 45 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIV 103
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +LLE MA GDL +L E
Sbjct: 104 RCIGVSLQSLPRFILLELMAGGDLKSFLRE 133
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 36 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 90
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 91 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 125
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 126 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 181
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 182 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+ H N++
Sbjct: 39 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIV 97
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +LLE MA GDL +L E
Sbjct: 98 RCIGVSLQSLPRFILLELMAGGDLKSFLRE 127
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+ H N++
Sbjct: 55 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIV 113
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +LLE MA GDL +L E
Sbjct: 114 RCIGVSLQSLPRFILLELMAGGDLKSFLRE 143
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 39 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 93
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 94 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 128
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 129 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 184
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 185 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 233
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 37 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 91
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 92 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 126
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 127 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 182
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 183 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 231
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+ H N++
Sbjct: 65 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIV 123
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +LLE MA GDL +L E
Sbjct: 124 RCIGVSLQSLPRFILLELMAGGDLKSFLRE 153
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 77/218 (35%), Gaps = 51/218 (23%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L +G G VY+A + A KV+D + +D + D L+ HPN++ L
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY 104
Query: 474 AGKEKLVLLEFMANGDLHRWLHEL--PTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
+L+EF A G + + EL P E ++ T D
Sbjct: 105 YENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLD------------------ 146
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGER--- 588
L YLH H L +IL + K+A FG+ + + R
Sbjct: 147 -----------ALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSF 195
Query: 589 ----------------SENETCGPESDVYCFGVILMEL 610
S++ ++DV+ G+ L+E+
Sbjct: 196 IGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEM 233
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+ H N++
Sbjct: 56 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIV 114
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +LLE MA GDL +L E
Sbjct: 115 RCIGVSLQSLPRFILLELMAGGDLKSFLRE 144
>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
pdb|3KEX|B Chain B, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
Length = 325
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 50/232 (21%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVA-MFDE 456
I + K +L G G V++ V E + V IKV+++ G AV
Sbjct: 9 IFKETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLA 68
Query: 457 LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHP 516
+ L H +++ L G C +LV +++ G L D H
Sbjct: 69 IGSLDHAHIVRLLGLCPGSSLQLVT-QYLPLGSL------------------LDHVRQHR 109
Query: 517 GAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG 576
GA + NW + +A+G+ YL G H +L ++LL + ++A FG
Sbjct: 110 GA---LGPQLLLNW------GVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFG 160
Query: 577 LRNIGVKNVGERSENETCGP----------------ESDVYCFGVILMELLT 612
+ ++ + + +E P +SDV+ +GV + EL+T
Sbjct: 161 VADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMT 212
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 36 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 90
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 91 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 125
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 126 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 181
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 182 LSPESKQARANXFVGTAQYVSPELLTEKSAXKSSDLWALGCIIYQLVAG 230
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 51/208 (24%)
Query: 425 RAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLAGYCIAGKEKLVL 481
R VL G VA+K++D + ++ +F E+ +K HPN++ L K ++
Sbjct: 35 RHVLTGR-EVAVKIIDKTQ-LNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLV 92
Query: 482 LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVA 541
+E+ + G++ +L +H EK +I V
Sbjct: 93 MEYASGGEVFDYL------------------------VAHGRMKEKEARAKFRQIVSAVQ 128
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN---------- 591
Y H H L ++LL + KIA FG N VG + +
Sbjct: 129 ----YCHQKYIVHRDLKAENLLLDGDMNIKIADFGFSN--EFTVGNKLDTFCGSPPYAAP 182
Query: 592 ------ETCGPESDVYCFGVILMELLTG 613
+ GPE DV+ GVIL L++G
Sbjct: 183 ELFQGKKYDGPEVDVWSLGVILYTLVSG 210
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L+ G G VY+ + E + VAIK L A + + DE
Sbjct: 18 ILKETEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 75
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L++ + M G L ++ E H
Sbjct: 76 YVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVRE-----------------H 117
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 118 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 167
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 168 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 221
>pdb|4EXU|A Chain A, Mapk13, Inactive Form
pdb|4EYJ|A Chain A, Mapk13 Complex With Inhibitor
pdb|4EYM|A Chain A, Mapk13 Complex With Inhibitor
Length = 371
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
Query: 524 SPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGV 582
S EK ++ + +GL Y+H G H L ++ + E E KI FGL R+
Sbjct: 142 SEEKIQYLVYQML-----KGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADA 196
Query: 583 KNVGERSENETCGPE-----------SDVYCFGVILMELLTGK 614
+ G PE D++ G I+ E+LTGK
Sbjct: 197 EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK 239
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 11 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 68
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L++ + M G L ++ E H
Sbjct: 69 YVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVRE-----------------H 110
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 111 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 160
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 161 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 214
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 12 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 69
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L++ + M G L ++ E H
Sbjct: 70 YVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVRE-----------------H 111
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 112 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 161
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 162 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 215
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+ H N++
Sbjct: 38 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIV 96
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +LLE MA GDL +L E
Sbjct: 97 RCIGVSLQSLPRFILLELMAGGDLKSFLRE 126
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 36 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 90
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 91 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 125
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 126 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 181
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 182 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+ H N++
Sbjct: 30 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIV 88
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +LLE MA GDL +L E
Sbjct: 89 RCIGVSLQSLPRFILLELMAGGDLKSFLRE 118
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 36/226 (15%)
Query: 20 QSTCNSKDQELVSKAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFL 79
QS N K+ +L S +S +++ P T + LNLSS L + L
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLA-----------PFTKLELLNLSSNVLYETLD---L 76
Query: 80 RNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQV 139
++S L ++DL+NN ++ + G T N+S+ G K
Sbjct: 77 ESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKN------------ 124
Query: 140 LNLSSNRFTNLVKLSQ--FSKLMVLDVSNNDLRILPSGFANLSK----LRHLDISSCKIS 193
+ L++N+ T L L + S++ LD+ N++ + FA L+ L HL++ I
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--NFAELAASSDTLEHLNLQYNFIY 182
Query: 194 GNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKF 239
++K LK LD+S+N + P +F +GV ++++ NK
Sbjct: 183 -DVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKL 226
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 90 LSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTN 149
++++SLK ++ S ++ +++LS G + + PF +++LNLSSN
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLS----GNPLSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 150 LVKLSQFSKLMVLDVSNNDLRILPSG 175
+ L S L LD++NN ++ L G
Sbjct: 73 TLDLESLSTLRTLDLNNNYVQELLVG 98
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 15 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 72
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L++ + M G L ++ E H
Sbjct: 73 YVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVRE-----------------H 114
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 115 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 164
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 165 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 218
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE--- 597
RGL Y+H G H L S++ + E E +I FGL R + G + PE
Sbjct: 142 RGLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLARQADEEMTGYVATRWYRAPEIML 201
Query: 598 --------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLV 628
D++ G I+ ELL GK G+D D +K + ++V
Sbjct: 202 NWMHYNQTVDIWSVGCIMAELLQGKALFPGSDYIDQLKRIMEVV 245
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 80/222 (36%), Gaps = 42/222 (18%)
Query: 407 SHFGKESLLAEGRCGPVYRAV-LPGELHVAIK---VLDNAKGIDHDDAVAMFDELSRLKH 462
++F E + G+ VYRA L + VA+K + D D + D L +L H
Sbjct: 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91
Query: 463 PNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHI 522
PN++ I E ++LE GDL R + + +
Sbjct: 92 PNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLI------------------ 133
Query: 523 SSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIG 581
PE+T W + + + L ++H H + +++ + + K+ GL R
Sbjct: 134 --PERTVW----KYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187
Query: 582 VKNVG-------------ERSENETCGPESDVYCFGVILMEL 610
K ER +SD++ G +L E+
Sbjct: 188 SKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEM 229
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 14 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 71
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L++ + M G L ++ E H
Sbjct: 72 YVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVRE-----------------H 113
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 114 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 163
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 164 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 217
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 77/218 (35%), Gaps = 51/218 (23%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L +G G VY+A + A KV+D + +D + D L+ HPN++ L
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY 104
Query: 474 AGKEKLVLLEFMANGDLHRWLHEL--PTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
+L+EF A G + + EL P E ++ T D
Sbjct: 105 YENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLD------------------ 146
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGER--- 588
L YLH H L +IL + K+A FG+ + + R
Sbjct: 147 -----------ALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQRRDSF 195
Query: 589 ----------------SENETCGPESDVYCFGVILMEL 610
S++ ++DV+ G+ L+E+
Sbjct: 196 IGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEM 233
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 13 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 70
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L++ + M G L ++ E H
Sbjct: 71 YVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVRE-----------------H 112
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 113 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 162
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 163 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 216
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 77/218 (35%), Gaps = 51/218 (23%)
Query: 415 LAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCI 473
L +G G VY+A + A KV+D + +D + D L+ HPN++ L
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY 104
Query: 474 AGKEKLVLLEFMANGDLHRWLHEL--PTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWV 531
+L+EF A G + + EL P E ++ T D
Sbjct: 105 YENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLD------------------ 146
Query: 532 TRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGER--- 588
L YLH H L +IL + K+A FG+ + + R
Sbjct: 147 -----------ALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRXIQRRDXF 195
Query: 589 ----------------SENETCGPESDVYCFGVILMEL 610
S++ ++DV+ G+ L+E+
Sbjct: 196 IGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEM 233
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 17/104 (16%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE--- 597
RGL Y+H G H L S++ + E E +I FGL R + G + PE
Sbjct: 142 RGLKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLARQADEEMTGYVATRWYRAPEIML 201
Query: 598 --------SDVYCFGVILMELLTGKR---GTD--DCVKWVRKLV 628
D++ G I+ ELL GK G+D D +K + ++V
Sbjct: 202 NWMHYNQTVDIWSVGCIMAELLQGKALFPGSDYIDQLKRIMEVV 245
>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|C Chain C, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI7|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
pdb|1BLX|A Chain A, P19ink4dCDK6 COMPLEX
pdb|1G3N|A Chain A, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|E Chain E, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 326
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 37/190 (19%)
Query: 402 LIAATSHFGKESLLAEGRCGPVYRA--VLPGELHVAIKVLDNAKG-----IDHDDAVAMF 454
L A + + + EG G V++A + G VA+K + G + VA+
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65
Query: 455 DELSRLKHPNLLPLAGYCIAGKE----KLVLLEFMANGDLHRWLHELPTGEPNVEDWSTD 510
L +HPN++ L C + KL L+ + DL +L ++P
Sbjct: 66 RHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVP------------ 113
Query: 511 TWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEP 570
PG + T + + RGL +LH H L +IL+ S +
Sbjct: 114 ----EPGVPTE----------TIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQI 159
Query: 571 KIAGFGLRNI 580
K+A FGL I
Sbjct: 160 KLADFGLARI 169
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 109 LTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN--RFTNLVKLSQF--SKLMVLDV 164
L + L+ N+ G+I FK + PS+ L+LS N F+ S + L LD+
Sbjct: 325 LKSLTLTMNK--GSISFKKVA----LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 378
Query: 165 SNNDLRILPSGFANLSKLRHLDISSCKISGNIKPVSF--LHSLKYLDVSNNSMNGTFPSD 222
S N I+ + F L +L+HLD + + +F L L YLD+S + F
Sbjct: 379 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 438
Query: 223 FPPLSGVKFLNISLNKF 239
F L+ + L ++ N F
Sbjct: 439 FLGLTSLNTLKMAGNSF 455
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 162 LDVSNNDLRILPS-GFANLSKLRHLDISSCKISG-NIKPVSFLHSLKYLDVSNNSMNGTF 219
+D+S N L+IL S F+N S+L+ LD+S C+I K LH L L ++ N +
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 220 PSDFPPLSGVK 230
P F L+ ++
Sbjct: 92 PGSFSGLTSLE 102
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 46/203 (22%)
Query: 72 GIISWKFLRNMSELHSIDLSNNSLK--GSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTS 129
G IS+K + + L +DLS N+L G T SL ++LS F G I ++
Sbjct: 335 GSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS---FNGAIIM--SA 388
Query: 130 RNGPFPSVQVLNLSSNRFTNLVKLSQF---SKLMVLDVSNNDLRI--------------- 171
+Q L+ + + + S F KL+ LD+S + +I
Sbjct: 389 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 448
Query: 172 -----------LPSGFANLSKLRHLDISSCKISGNIKPVSF-----LHSLKYLDVSNNSM 215
L + FAN + L LD+S C+ ++ +S+ LH L+ L++S+N++
Sbjct: 449 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ----LEQISWGVFDTLHRLQLLNMSHNNL 504
Query: 216 NGTFPSDFPPLSGVKFLNISLNK 238
S + L + L+ S N+
Sbjct: 505 LFLDSSHYNQLYSLSTLDCSFNR 527
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 108/271 (39%), Gaps = 60/271 (22%)
Query: 425 RAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLAGYCIAGKEKLVL 481
R +L G+ VA++++D + ++ +F E+ +K HPN++ L K ++
Sbjct: 34 RHILTGK-EVAVRIIDKTQ-LNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLV 91
Query: 482 LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVA 541
+E+ + G++ +L +H EK +I V
Sbjct: 92 MEYASGGEVFDYL------------------------VAHGRMKEKEARAKFRQIVSAVQ 127
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRN---IGVK----------NVGER 588
Y H H L ++LL + KIA FG N G K E
Sbjct: 128 ----YCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPEL 183
Query: 589 SENETC-GPESDVYCFGVILMELLTGKRGTD-DCVKWVRKLVKEGAGGDALDFRLKLGSG 646
+ + GPE DV+ GVIL L++G D +K +R+ V G +R+
Sbjct: 184 FQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGK------YRIPF--- 234
Query: 647 DSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
++ E+L +L +P KR T++Q++
Sbjct: 235 -YMSTDCENLLKKFLIL--NPSKRGTLEQIM 262
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Query: 109 LTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN--RFTNLVKLSQF--SKLMVLDV 164
L + L+ N+ G+I FK + PS+ L+LS N F+ S + L LD+
Sbjct: 330 LKSLTLTMNK--GSISFKKVA----LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 165 SNNDLRILPSGFANLSKLRHLDISSCKISGNIKPVSF--LHSLKYLDVSNNSMNGTFPSD 222
S N I+ + F L +L+HLD + + +F L L YLD+S + F
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443
Query: 223 FPPLSGVKFLNISLNKF 239
F L+ + L ++ N F
Sbjct: 444 FLGLTSLNTLKMAGNSF 460
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 162 LDVSNNDLRILPS-GFANLSKLRHLDISSCKISG-NIKPVSFLHSLKYLDVSNNSMNGTF 219
+D+S N L+IL S F+N S+L+ LD+S C+I K LH L L ++ N +
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 220 PSDFPPLSGVK 230
P F L+ ++
Sbjct: 97 PGSFSGLTSLE 107
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 46/203 (22%)
Query: 72 GIISWKFLRNMSELHSIDLSNNSLK--GSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTS 129
G IS+K + + L +DLS N+L G T SL ++LS F G I ++
Sbjct: 340 GSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS---FNGAIIM--SA 393
Query: 130 RNGPFPSVQVLNLSSNRFTNLVKLSQF---SKLMVLDVSNNDLRI--------------- 171
+Q L+ + + + S F KL+ LD+S + +I
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453
Query: 172 -----------LPSGFANLSKLRHLDISSCKISGNIKPVSF-----LHSLKYLDVSNNSM 215
L + FAN + L LD+S C+ ++ +S+ LH L+ L++S+N++
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ----LEQISWGVFDTLHRLQLLNMSHNNL 509
Query: 216 NGTFPSDFPPLSGVKFLNISLNK 238
S + L + L+ S N+
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNR 532
>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral
Cyclin
pdb|1XO2|B Chain B, Crystal Structure Of A Human Cyclin-Dependent Kinase 6
Complex With A Flavonol Inhibitor, Fisetin
pdb|2EUF|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclin In Complex With The
Inhibitor Pd0332991
pdb|2F2C|B Chain B, X-Ray Structure Of Human Cdk6-Vcyclinwith The Inhibitor
Aminopurvalanol
Length = 308
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 37/190 (19%)
Query: 402 LIAATSHFGKESLLAEGRCGPVYRA--VLPGELHVAIKVLDNAKG-----IDHDDAVAMF 454
L A + + + EG G V++A + G VA+K + G + VA+
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65
Query: 455 DELSRLKHPNLLPLAGYCIAGKE----KLVLLEFMANGDLHRWLHELPTGEPNVEDWSTD 510
L +HPN++ L C + KL L+ + DL +L ++P
Sbjct: 66 RHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVP------------ 113
Query: 511 TWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEP 570
PG + T + + RGL +LH H L +IL+ S +
Sbjct: 114 ----EPGVPTE----------TIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQI 159
Query: 571 KIAGFGLRNI 580
K+A FGL I
Sbjct: 160 KLADFGLARI 169
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 55/273 (20%), Positives = 102/273 (37%), Gaps = 64/273 (23%)
Query: 425 RAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLAGYCIAGKEKLVL 481
R +L G+ VA+K++D + ++ +F E+ +K HPN++ L K ++
Sbjct: 27 RHILTGK-EVAVKIIDKTQ-LNSSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKTLYLV 84
Query: 482 LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVA 541
+E+ + G++ +L W A + +
Sbjct: 85 MEYASGGEVFDYL-------------VAHGWMKEKEARAKFRQ---------------IV 116
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN---------- 591
+ Y H H L ++LL + KIA FG N G + +
Sbjct: 117 SAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSN--EFTFGNKLDTFCGSPPYAAP 174
Query: 592 ------ETCGPESDVYCFGVILMELLTGKRGTD-DCVKWVRKLVKEGAGGDALDFRLKLG 644
+ GPE DV+ GVIL L++G D +K +R+ V G +R+
Sbjct: 175 ELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGK------YRIPFY 228
Query: 645 SGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+++ + +P KR T++Q++
Sbjct: 229 MSTDCENLLKKFLIL------NPSKRGTLEQIM 255
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+ H N++
Sbjct: 53 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIV 111
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +L+E MA GDL +L E
Sbjct: 112 RCIGVSLQSLPRFILMELMAGGDLKSFLRE 141
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 51/208 (24%)
Query: 425 RAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLAGYCIAGKEKLVL 481
R +L G VAIK++D + ++ +F E+ +K HPN++ L K ++
Sbjct: 32 RHILTGR-EVAIKIIDKTQ-LNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 89
Query: 482 LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVA 541
+E+ + G++ +L +H EK +I V
Sbjct: 90 MEYASGGEVFDYL------------------------VAHGRMKEKEARSKFRQIVSAVQ 125
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSEN---------- 591
Y H H L ++LL + KIA FG N VG + +
Sbjct: 126 ----YCHQKRIVHRDLKAENLLLDADMNIKIADFGFSN--EFTVGGKLDTFCGSPPYAAP 179
Query: 592 ------ETCGPESDVYCFGVILMELLTG 613
+ GPE DV+ GVIL L++G
Sbjct: 180 ELFQGKKYDGPEVDVWSLGVILYTLVSG 207
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 21/149 (14%)
Query: 499 TGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVA---RGLAYLHHVGSTHG 555
T + ++D+ TD + P G+ + K + RI V +GL Y+H G H
Sbjct: 94 TPDETLDDF-TDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHR 152
Query: 556 HLVTSSILLAESLEPKIAGFGL-RNIGVKNVGERSENETCGPE-----------SDVYCF 603
L ++ + E E KI FGL R + G PE D++
Sbjct: 153 DLKPGNLAVNEDCELKILDFGLARQADSEMXGXVVTRWYRAPEVILNWMRYTQTVDIWSV 212
Query: 604 GVILMELLTGK---RGTD--DCVKWVRKL 627
G I+ E++TGK +G+D D +K + K+
Sbjct: 213 GCIMAEMITGKTLFKGSDHLDQLKEIMKV 241
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 11 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 68
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 69 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGXLLDYVRE-----------------H 110
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 111 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 160
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 161 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 214
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 415 LAEGRCGPVYRAVL------PGELHVAIKVLDNAKGIDHDDAVAMFDEL--SRLKHPNLL 466
L G G VY + P L VA+K L + D+ + + L S+ H N++
Sbjct: 38 LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCS-EQDELDFLMEALIISKFNHQNIV 96
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHE 496
G + + +L+E MA GDL +L E
Sbjct: 97 RCIGVSLQSLPRFILMELMAGGDLKSFLRE 126
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 522 ISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
++ PE ++ + + G YLH H L ++ L E LE KI FGL
Sbjct: 114 LTEPEARYYLRQ------IVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLAT-K 166
Query: 582 VKNVGERSENETCGP----------------ESDVYCFGVILMELLTGK 614
V+ GER + CG E DV+ G I+ LL GK
Sbjct: 167 VEYDGERKKT-LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGK 214
>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|3NUX|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor
pdb|4AUA|A Chain A, Liganded X-ray Crystal Structure Of Cyclin Dependent
Kinase 6 (cdk6)
pdb|4EZ5|A Chain A, Cdk6 (monomeric) In Complex With Inhibitor
Length = 307
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 73/190 (38%), Gaps = 37/190 (19%)
Query: 402 LIAATSHFGKESLLAEGRCGPVYRA--VLPGELHVAIKVLDNAKG-----IDHDDAVAMF 454
L A + + + EG G V++A + G VA+K + G + VA+
Sbjct: 6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 65
Query: 455 DELSRLKHPNLLPLAGYCIAGKE----KLVLLEFMANGDLHRWLHELPTGEPNVEDWSTD 510
L +HPN++ L C + KL L+ + DL +L ++P
Sbjct: 66 RHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVP------------ 113
Query: 511 TWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEP 570
PG + T + + RGL +LH H L +IL+ S +
Sbjct: 114 ----EPGVPTE----------TIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQI 159
Query: 571 KIAGFGLRNI 580
K+A FGL I
Sbjct: 160 KLADFGLARI 169
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 57/185 (30%)
Query: 413 SLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYC 472
L+ GR G VY+ L E VA+KV A + + ++ + ++H N+
Sbjct: 19 ELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNFINEKNIY-RVPLMEHDNI----ARF 72
Query: 473 IAGKEK---------LVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHIS 523
I G E+ L+++E+ NG L ++L
Sbjct: 73 IVGDERVTADGRMEYLLVMEYYPNGSLXKYL----------------------------- 103
Query: 524 SPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL--RNIG 581
S ++WV+ R+A V RGLAYLH + + + +P I+ L RN+
Sbjct: 104 SLHTSDWVSSCRLAHSVTRGLAYLH-----------TELPRGDHYKPAISHRDLNSRNVL 152
Query: 582 VKNVG 586
VKN G
Sbjct: 153 VKNDG 157
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 522 ISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
++ PE ++ + + G YLH H L ++ L E LE KI FGL
Sbjct: 114 LTEPEARYYLRQ------IVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLAT-K 166
Query: 582 VKNVGERSENETCGP----------------ESDVYCFGVILMELLTGK 614
V+ GER + CG E DV+ G I+ LL GK
Sbjct: 167 VEYDGERKKT-LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGK 214
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 51/208 (24%)
Query: 425 RAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLK---HPNLLPLAGYCIAGKEKLVL 481
R +L G VAIK++D + ++ +F E+ +K HPN++ L K ++
Sbjct: 35 RHILTGR-EVAIKIIDKTQ-LNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92
Query: 482 LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVA 541
+E+ + G++ +L +H EK +I V
Sbjct: 93 MEYASGGEVFDYL------------------------VAHGRMKEKEARSKFRQIVSAVQ 128
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSE----------- 590
Y H H L ++LL + KIA FG N VG + +
Sbjct: 129 ----YCHQKRIVHRDLKAENLLLDADMNIKIADFGFSN--EFTVGGKLDAFCGAPPYAAP 182
Query: 591 -----NETCGPESDVYCFGVILMELLTG 613
+ GPE DV+ GVIL L++G
Sbjct: 183 ELFQGKKYDGPEVDVWSLGVILYTLVSG 210
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L+ G G VY+ + E + VAIK L A + + DE
Sbjct: 11 ILKETEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 68
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 69 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 110
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 111 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 160
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 161 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 214
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 91/226 (40%), Gaps = 50/226 (22%)
Query: 413 SLLAEGRCGPVY--RAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLK----HPNLL 466
L+ G G VY R V G+L AIKV+D + D+ + E++ LK H N+
Sbjct: 30 ELVGNGTYGQVYKGRHVKTGQL-AAIKVMD----VTGDEEEEIKQEINMLKKYSHHRNIA 84
Query: 467 PLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPE 526
G I D WL G +V D +T G+ +
Sbjct: 85 TYYGAFIKKNP--------PGMDDQLWLVMEFCGAGSVTDLIKNT------KGNTL---- 126
Query: 527 KTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-----RNIG 581
K W+ I + RGL++LH H + ++LL E+ E K+ FG+ R +G
Sbjct: 127 KEEWIAY--ICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVG 184
Query: 582 VKN--VG------------ERSENETCGPESDVYCFGVILMELLTG 613
+N +G + + + T +SD++ G+ +E+ G
Sbjct: 185 RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEG 230
>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment
pdb|3H4J|A Chain A, Crystal Structure Of Pombe Ampk Kdaid Fragment
Length = 336
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 14/91 (15%)
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI-----------GVKNVGERSE- 590
+ Y H H L ++LL ++L KIA FGL NI G N
Sbjct: 120 AIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVI 179
Query: 591 --NETCGPESDVYCFGVILMELLTGKRGTDD 619
GPE DV+ G++L +L G+ DD
Sbjct: 180 NGKLYAGPEVDVWSCGIVLYVMLVGRLPFDD 210
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 27/123 (21%)
Query: 460 LKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAG 519
L+HPN+L G K + E++ G L + + + P
Sbjct: 64 LEHPNVLKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQYP----------------- 106
Query: 520 SHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRN 579
W R A +A G+AYLH + H L + + L+ E+ +A FGL
Sbjct: 107 ----------WSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLAR 156
Query: 580 IGV 582
+ V
Sbjct: 157 LMV 159
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 32/158 (20%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENET 593
VA+G+ +L H L +ILL+E KI FGL R+I V+ R +
Sbjct: 202 VAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKW 261
Query: 594 CGPE----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDF 639
PE SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 262 MAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY 320
Query: 640 RLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+ EM +++ C P +RPT +++
Sbjct: 321 --------TTPEMYQTM---LDCWHGEPSQRPTFSELV 347
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 522 ISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
++ PE ++ + + G YLH H L ++ L E LE KI FGL
Sbjct: 118 LTEPEARYYLRQ------IVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLAT-K 170
Query: 582 VKNVGERSENETCGP----------------ESDVYCFGVILMELLTGK 614
V+ GER + CG E DV+ G I+ LL GK
Sbjct: 171 VEYDGERKKT-LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGK 218
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 21 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 78
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 79 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 120
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 121 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 170
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 171 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 224
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 32/158 (20%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENET 593
VA+G+ +L H L +ILL+E KI FGL R+I V+ R +
Sbjct: 207 VAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKW 266
Query: 594 CGPE----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDF 639
PE SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 267 MAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY 325
Query: 640 RLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+ EM +++ C P +RPT +++
Sbjct: 326 --------TTPEMYQTM---LDCWHGEPSQRPTFSELV 352
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 86/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG VL EL AIK+L+ I + + E +SRL
Sbjct: 34 FGK--ILGEGSFSTT---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 88
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG+L +++ +
Sbjct: 89 HPFFVKLY-FTFQDDEKLYFGLSYAKNGELLKYIRK------------------------ 123
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 124 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 179
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 180 LSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 154 SQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSC 190
QF+ L L ++ N LR LP+ A+L++LR L I +C
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 90/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L+ G G VY+ + E + VAIK L A + + DE
Sbjct: 18 ILKETEFKKIKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 75
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 76 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 117
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 118 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 167
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 168 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 221
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 36 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 93
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 94 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 135
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 136 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 185
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 186 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 239
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 32/158 (20%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENET 593
VA+G+ +L H L +ILL+E KI FGL R+I V+ R +
Sbjct: 200 VAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKW 259
Query: 594 CGPE----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDF 639
PE SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 260 MAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY 318
Query: 640 RLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+ EM +++ C P +RPT +++
Sbjct: 319 --------TTPEMYQTM---LDCWHGEPSQRPTFSELV 345
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 25/109 (22%)
Query: 529 NWVTRHRIAIG--------VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
+++ RH I + + G+AYLH H +L ++LL KI FGL
Sbjct: 107 DYLPRHSIGLAQLLLFAQQICEGMAYLHSQHYIHRNLAARNVLLDNDRLVKIGDFGLAKA 166
Query: 581 ---GVKNVGERSENET----CGPE----------SDVYCFGVILMELLT 612
G + R + ++ PE SDV+ FGV L ELLT
Sbjct: 167 VPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT 215
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 32/158 (20%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI-----GVKNVGERSENET 593
VA+G+ +L H L +ILL+E KI FGL R+I V+ R +
Sbjct: 209 VAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKW 268
Query: 594 CGPE----------SDVYCFGVILMELLTGKRGTDDCVK----WVRKLVKEGAGGDALDF 639
PE SDV+ FGV+L E+ + VK + R+L KEG A D+
Sbjct: 269 MAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL-KEGTRMRAPDY 327
Query: 640 RLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVL 677
+ EM +++ C P +RPT +++
Sbjct: 328 --------TTPEMYQTM---LDCWHGEPSQRPTFSELV 354
>pdb|3GNI|B Chain B, Structure Of Strad And Mo25
Length = 389
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 29/130 (22%)
Query: 460 LKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAG 519
HPN++P IA E V+ FMA G + D H G
Sbjct: 83 FNHPNIVPYRATFIADNELWVVTSFMAYGS------------------AKDLICTHFMDG 124
Query: 520 SHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLR- 578
N + I GV + L Y+HH+G H + S IL+ S++ K+ GLR
Sbjct: 125 --------MNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILI--SVDGKVYLSGLRS 174
Query: 579 NIGVKNVGER 588
N+ + + G+R
Sbjct: 175 NLSMISHGQR 184
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 25/109 (22%)
Query: 529 NWVTRHRIAIG--------VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
+++ RH I + + G+AYLH H +L ++LL KI FGL
Sbjct: 107 DYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRNLAARNVLLDNDRLVKIGDFGLAKA 166
Query: 581 ---GVKNVGERSENET----CGPE----------SDVYCFGVILMELLT 612
G + R + ++ PE SDV+ FGV L ELLT
Sbjct: 167 VPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT 215
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 22/190 (11%)
Query: 60 IRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGW-FWSTQSLTQVNLSKNR 118
++ LNLS G+ S F + +L +DL+ L + P F + L +NL
Sbjct: 375 LQTLNLSHNEPLGLQSQAF-KECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL---- 429
Query: 119 FGGTIGFKPTSRN---GPFPSVQVLNLSSNRF-------TNLVKLSQFSKLMVLDVSNND 168
T F TS P ++ LNL N F TNL++ ++++L S
Sbjct: 430 ---TYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILS-SCGL 485
Query: 169 LRILPSGFANLSKLRHLDISSCKISGN-IKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLS 227
L I F +L K+ H+D+S ++ + I +S L + YL+++ NS+N P P LS
Sbjct: 486 LSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILS 544
Query: 228 GVKFLNISLN 237
+N+S N
Sbjct: 545 QQSTINLSHN 554
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 30/137 (21%)
Query: 136 SVQVLNLSSNRFTNL--VKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISS---- 189
SV+ LNL +RF+++ F++L LD++ L+ LPSG L+ L+ L +S
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFD 311
Query: 190 --CKIS-------------GNIKPVSF-------LHSLKYLDVSNNSMNGT--FPSDFPP 225
C+IS GN+K + L +L+ LD+S+N + +
Sbjct: 312 QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKN 371
Query: 226 LSGVKFLNISLNKFTGF 242
LS ++ LN+S N+ G
Sbjct: 372 LSHLQTLNLSHNEPLGL 388
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 29/130 (22%)
Query: 460 LKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAG 519
HPN++P IA E V+ FMA G + D H G
Sbjct: 67 FNHPNIVPYRATFIADNELWVVTSFMAYGS------------------AKDLICTHFMDG 108
Query: 520 SHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLR- 578
N + I GV + L Y+HH+G H + S IL+ S++ K+ GLR
Sbjct: 109 --------MNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILI--SVDGKVYLSGLRS 158
Query: 579 NIGVKNVGER 588
N+ + + G+R
Sbjct: 159 NLSMISHGQR 168
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 104/227 (45%), Gaps = 36/227 (15%)
Query: 20 QSTCNSKDQELVSKAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFL 79
QS N K+ +L S +S +++ P T + LNLSS L + L
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLA-----------PFTKLELLNLSSNVLYETLD---L 76
Query: 80 RNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQV 139
++S L ++DL+NN ++ + G S ++L N + +R + G +
Sbjct: 77 ESLSTLRTLDLNNNYVQELLVG--PSIETLHAANNNISRVSCSRG----------QGKKN 124
Query: 140 LNLSSNRFTNLVKLSQ--FSKLMVLDVSNNDLRILPSGFANLSK----LRHLDISSCKIS 193
+ L++N+ T L L + S++ LD+ N++ + FA L+ L HL++ I
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--NFAELAASSDTLEHLNLQYNFIY 182
Query: 194 GNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFT 240
++K LK LD+S+N + P +F +GV ++++ NK
Sbjct: 183 -DVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV 227
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 90 LSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTN 149
++++SLK ++ S ++ +++LS G + + PF +++LNLSSN
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLS----GNPLSQISAADLAPFTKLELLNLSSNVLYE 72
Query: 150 LVKLSQFSKLMVLDVSNNDLRILPSG 175
+ L S L LD++NN ++ L G
Sbjct: 73 TLDLESLSTLRTLDLNNNYVQELLVG 98
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 11 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 68
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 69 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 110
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 111 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 160
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 161 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 214
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 5 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 62
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 63 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 104
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 105 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 154
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 155 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 208
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 86/229 (37%), Gaps = 58/229 (25%)
Query: 409 FGKESLLAEGRCGPVYRAVLPGEL----HVAIKVLDNAKGIDHDDAVAMFDE---LSRLK 461
FGK +L EG V VL EL AIK+L+ I + + E +SRL
Sbjct: 36 FGK--ILGEGSFSTV---VLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLD 90
Query: 462 HPNLLPLAGYCIAGKEKLVL-LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGS 520
HP + L + EKL L + NG L +++ +
Sbjct: 91 HPFFVKLY-FTFQDDEKLYFGLSYAKNGCLLKYIRK------------------------ 125
Query: 521 HISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
I S ++T TR A + L YLH G H L +ILL E + +I FG +
Sbjct: 126 -IGSFDET--CTRFYTA-EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV 181
Query: 581 GVKNVGERSENETCG------PE----------SDVYCFGVILMELLTG 613
+ N G PE SD++ G I+ +L+ G
Sbjct: 182 LSPESKQARANSFVGTAQYVSPELLTEKSASKSSDLWALGCIIYQLVAG 230
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 13 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 70
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 71 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 112
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 113 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 162
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 163 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 216
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 14 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 71
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 72 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 113
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 114 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 163
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 164 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 217
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 24/145 (16%)
Query: 63 LNLSSRNLSGIISWKFLRNMS--------ELHSIDLSNNSLKGSVPGWFWSTQSLTQVNL 114
L S++NL +SW LR++ EL +DLS ++ G + S L+ + L
Sbjct: 27 LPFSTKNLD--LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 84
Query: 115 SKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQF-----SKLMVLDVSNNDL 169
+ N G F + L TNL L F L L+V++N +
Sbjct: 85 TGNPIQSLAL-------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 137
Query: 170 RI--LPSGFANLSKLRHLDISSCKI 192
+ LP F+NL+ L HLD+SS KI
Sbjct: 138 QSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 11 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 68
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 69 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 110
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 111 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 160
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 161 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 214
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 24/145 (16%)
Query: 63 LNLSSRNLSGIISWKFLRNMS--------ELHSIDLSNNSLKGSVPGWFWSTQSLTQVNL 114
L S++NL +SW LR++ EL +DLS ++ G + S L+ + L
Sbjct: 28 LPFSTKNLD--LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 85
Query: 115 SKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQF-----SKLMVLDVSNNDL 169
+ N G F + L TNL L F L L+V++N +
Sbjct: 86 TGNPIQSLAL-------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 138
Query: 170 RI--LPSGFANLSKLRHLDISSCKI 192
+ LP F+NL+ L HLD+SS KI
Sbjct: 139 QSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 14 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 71
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 72 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 113
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 114 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 163
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 164 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 217
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 17 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 74
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 75 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 116
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 117 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 166
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 167 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 220
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 522 ISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
++ PE ++ + + G YLH H L ++ L E LE KI FGL
Sbjct: 136 LTEPEARYYLRQ------IVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLAT-K 188
Query: 582 VKNVGERSENETCGP----------------ESDVYCFGVILMELLTGK 614
V+ GER + CG E DV+ G I+ LL GK
Sbjct: 189 VEYDGER-KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGK 236
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 25/109 (22%)
Query: 529 NWVTRHRIAIG--------VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
+++ RH I + + G+AYLH H L ++LL KI FGL
Sbjct: 124 DYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKA 183
Query: 581 ---GVKNVGERSENET----CGPE----------SDVYCFGVILMELLT 612
G + R + ++ PE SDV+ FGV L ELLT
Sbjct: 184 VPEGHEXYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLT 232
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 14 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 71
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 72 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 113
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 114 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 163
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 164 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 217
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 16/89 (17%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENETCGP--- 596
VARG+ +L H L +ILL+E+ KI FGL KN + +T P
Sbjct: 208 VARGMEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLPLKW 267
Query: 597 -------------ESDVYCFGVILMELLT 612
+SDV+ +GV+L E+ +
Sbjct: 268 MAPESIFDKIYSTKSDVWSYGVLLWEIFS 296
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 522 ISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
++ PE ++ + + G YLH H L ++ L E LE KI FGL
Sbjct: 112 LTEPEARYYLRQ------IVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLAT-K 164
Query: 582 VKNVGERSENETCGP----------------ESDVYCFGVILMELLTGK 614
V+ GER + CG E DV+ G I+ LL GK
Sbjct: 165 VEYDGERKKV-LCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGK 212
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 61 RELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFG 120
+ L+LS L + S+ F + EL +DLS ++ G + S L+ + L+ N
Sbjct: 33 KNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 91
Query: 121 GTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQF-----SKLMVLDVSNNDLRI--LP 173
G F + L TNL L F L L+V++N ++ LP
Sbjct: 92 SLAL-------GAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 144
Query: 174 SGFANLSKLRHLDISSCKI 192
F+NL+ L HLD+SS KI
Sbjct: 145 EYFSNLTNLEHLDLSSNKI 163
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 18 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 75
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 76 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 117
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 118 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 167
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 168 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 221
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 61 RELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFG 120
+ L+LS L + S+ F + EL +DLS ++ G + S L+ + L+ N
Sbjct: 31 KNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 121 GTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQF-----SKLMVLDVSNNDLRI--LP 173
G F + L TNL L F L L+V++N ++ LP
Sbjct: 90 SLAL-------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 174 SGFANLSKLRHLDISSCKISG 194
F+NL+ L HLD+SS KI
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS 163
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 96/238 (40%), Gaps = 45/238 (18%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-LHVAIKV--LDNAKGIDHDDAVAMFDELSR 459
++++S F + L G VY+ + ++VA+K LD+ +G A+ +
Sbjct: 1 MSSSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTP-STAIREISLMKE 59
Query: 460 LKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAG 519
LKH N++ L + ++ EFM N DL +++ G + G
Sbjct: 60 LKHENIVRLYDVIHTENKLTLVFEFMDN-DLKKYMDSRTVG--------------NTPRG 104
Query: 520 SHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-R 578
++ + W + +GLA+ H H L ++L+ + + K+ FGL R
Sbjct: 105 LELNLVKYFQW--------QLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLAR 156
Query: 579 NIGVKNVGERSE--------------NETCGPESDVYCFGVILMELLTGK---RGTDD 619
G+ SE + T D++ G IL E++TGK GT+D
Sbjct: 157 AFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTND 214
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 522 ISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
++ PE ++ + + G YLH H L ++ L E LE KI FGL
Sbjct: 138 LTEPEARYYLRQ------IVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLAT-K 190
Query: 582 VKNVGERSENETCGP----------------ESDVYCFGVILMELLTGK 614
V+ GER + CG E DV+ G I+ LL GK
Sbjct: 191 VEYDGER-KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGK 238
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 61 RELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFG 120
+ L+LS L + S+ F + EL +DLS ++ G + S L+ + L+ N
Sbjct: 32 KNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 90
Query: 121 GTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQF-----SKLMVLDVSNNDLRI--LP 173
G F + L TNL L F L L+V++N ++ LP
Sbjct: 91 SLAL-------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 143
Query: 174 SGFANLSKLRHLDISSCKI 192
F+NL+ L HLD+SS KI
Sbjct: 144 EYFSNLTNLEHLDLSSNKI 162
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 31/191 (16%)
Query: 26 KDQELVSKAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFLRNMSEL 85
KD ++ + + + TF+++ L P T + +LNL L+ + + + L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRCELTKL---QVDGTLPVL 79
Query: 86 HSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN 145
++DLS+N L+ S+P + +LT +++S NR P +Q L L N
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGN 134
Query: 146 RFTNLVK--LSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLD-----------ISSCKI 192
L L+ KL L ++NNDL LP+G N L +LD I
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFF 192
Query: 193 SGNIKPVSFLH 203
++ P +FLH
Sbjct: 193 GSHLLPFAFLH 203
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 133 PFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKI 192
P+ + LNL T L L LD+S+N L+ LP L L LD+S ++
Sbjct: 53 PYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 193 SG-NIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFT 240
+ + + L L+ L + N + P P ++ L+++ N T
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 430 GELH---VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMA 486
G+LH V +KVLD A + +S+L H +L+ G C+ G E +++ EF+
Sbjct: 36 GQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQEFVK 95
Query: 487 NGDLHRWL 494
G L +L
Sbjct: 96 FGSLDTYL 103
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 15 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 72
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L++ + M G L ++ E H
Sbjct: 73 YVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVRE-----------------H 114
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 115 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 164
Query: 575 FG-LRNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FG + +G + +E + +SDV+ +GV + EL+T
Sbjct: 165 FGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 218
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 47/201 (23%)
Query: 77 KFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFK-------PTS 129
+FL N S L +DLS+N LK PG F + L + L+ + + K +
Sbjct: 166 EFLGN-SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSI 224
Query: 130 RNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDL-------------------- 169
+N + Q+L S + F+ L +++ L LD+S N+L
Sbjct: 225 QNLSLANNQLLATSESTFSGL----KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLE 280
Query: 170 -----RILPSGFANLSKLRHLDIS--------SCKISGNIKPVSF--LHSLKYLDVSNNS 214
R+ P F LS LR+L + S NI SF L L+YL++ +N+
Sbjct: 281 YNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNN 340
Query: 215 MNGTFPSDFPPLSGVKFLNIS 235
+ T + F L +K+L++S
Sbjct: 341 IPSTKSNTFTGLVSLKYLSLS 361
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 25/176 (14%)
Query: 58 TPIRELNLSSRNLS----GIISWKFLRNMSELHSIDLSNNSLKGSVPGWFW-STQSLTQV 112
+P+ LNL+ ++S G SW + +L +DL N ++ + G W +++ ++
Sbjct: 381 SPLLTLNLTKNHISKIANGTFSW-----LGQLRILDLGLNEIEQKLSGQEWRGLRNIFEI 435
Query: 113 NLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNL-VKLSQFS---KLMVLDVSNND 168
LS N++ TS PS+Q L L N+ + S F L +LD+SNN+
Sbjct: 436 YLSYNKYLQL----STSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNN 491
Query: 169 L----RILPSGFANLSKL--RHLDISSCKISGNIK-PVSFLHSLKYLDVSNNSMNG 217
+ L G NL L +H +++ N PV+FL L +L + N NG
Sbjct: 492 IANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNG 547
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 13 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 70
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L++ + M G L ++ E H
Sbjct: 71 YVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVRE-----------------H 112
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 113 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 162
Query: 575 FG-LRNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FG + +G + +E + +SDV+ +GV + EL+T
Sbjct: 163 FGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 216
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 13 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 70
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L++ + M G L ++ E H
Sbjct: 71 YVMASVDNPHVCRLLGICLTSTVQLIM-QLMPFGCLLDYVRE-----------------H 112
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 113 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 162
Query: 575 FG-LRNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FG + +G + +E + +SDV+ +GV + EL+T
Sbjct: 163 FGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 216
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 78/199 (39%), Gaps = 52/199 (26%)
Query: 435 AIKVLDNA--KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVL-LEFMANGDLH 491
A+KVL A K D D L + HP ++ L Y + KL L L+F+ GDL
Sbjct: 56 AMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLH-YAFQTEGKLYLILDFLRGGDLF 114
Query: 492 -RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHV 550
R E+ E +V+ + + +A L +LH +
Sbjct: 115 TRLSKEVMFTEEDVKFYLAE-----------------------------LALALDHLHSL 145
Query: 551 GSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENETCG------PE------- 597
G + L +ILL E K+ FGL + + E+ CG PE
Sbjct: 146 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH--EKKAYSFCGTVEYMAPEVVNRRGH 203
Query: 598 ---SDVYCFGVILMELLTG 613
+D + FGV++ E+LTG
Sbjct: 204 TQSADWWSFGVLMFEMLTG 222
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 78/199 (39%), Gaps = 52/199 (26%)
Query: 435 AIKVLDNA--KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVL-LEFMANGDLH 491
A+KVL A K D D L + HP ++ L Y + KL L L+F+ GDL
Sbjct: 56 AMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLH-YAFQTEGKLYLILDFLRGGDLF 114
Query: 492 -RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHV 550
R E+ E +V+ + + +A L +LH +
Sbjct: 115 TRLSKEVMFTEEDVKFYLAE-----------------------------LALALDHLHSL 145
Query: 551 GSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENETCG------PE------- 597
G + L +ILL E K+ FGL + + E+ CG PE
Sbjct: 146 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH--EKKAYSFCGTVEYMAPEVVNRRGH 203
Query: 598 ---SDVYCFGVILMELLTG 613
+D + FGV++ E+LTG
Sbjct: 204 TQSADWWSFGVLMFEMLTG 222
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 136 SVQVLNLSSNRFTNLVK--LSQFSKLMVLDVSNNDLRILPSG-FANLSKLRHLDIS 188
+ QVL L NR T L + ++L LD+ NN L +LP+G F L++L L ++
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 88/234 (37%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 8 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 65
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 66 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 107
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A G+ YL H L ++L+ KI
Sbjct: 108 KDNIGSQYL----LNW------CVQIAEGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 157
Query: 575 FGL-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FGL + +G + +E + +SDV+ +GV + EL+T
Sbjct: 158 FGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 211
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 18/166 (10%)
Query: 29 ELVS-KAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFLRNMSELHS 87
+LVS K S V FN +L G T ++EL+LS +S + L+++++L
Sbjct: 33 DLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEE 89
Query: 88 IDLSNNSLKG--SVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN 145
+ ++ N LK +P + L+++ L N + T ++++L++ +N
Sbjct: 90 LSVNRNRLKNLNGIP-----SACLSRLFLDNNEL------RDTDSLIHLKNLEILSIRNN 138
Query: 146 RFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCK 191
+ ++V L SKL VLD+ N++ G L K+ +D++ K
Sbjct: 139 KLKSIVMLGFLSKLEVLDLHGNEITN-TGGLTRLKKVNWIDLTGQK 183
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 78/199 (39%), Gaps = 52/199 (26%)
Query: 435 AIKVLDNA--KGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVL-LEFMANGDLH 491
A+KVL A K D D L + HP ++ L Y + KL L L+F+ GDL
Sbjct: 57 AMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLH-YAFQTEGKLYLILDFLRGGDLF 115
Query: 492 -RWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHV 550
R E+ E +V+ + + +A L +LH +
Sbjct: 116 TRLSKEVMFTEEDVKFYLAE-----------------------------LALALDHLHSL 146
Query: 551 GSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENETCG------PE------- 597
G + L +ILL E K+ FGL + + E+ CG PE
Sbjct: 147 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH--EKKAYSFCGTVEYMAPEVVNRRGH 204
Query: 598 ---SDVYCFGVILMELLTG 613
+D + FGV++ E+LTG
Sbjct: 205 TQSADWWSFGVLMFEMLTG 223
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 67/172 (38%), Gaps = 37/172 (21%)
Query: 416 AEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAG 475
A GR G V++A L E +VA+K+ + ++ L +KH N+L G G
Sbjct: 33 ARGRFGCVWKAQLLNE-YVAVKIFPIQDKQSWQNEYEVYS-LPGMKHENILQFIGAEKRG 90
Query: 476 KEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHR 535
+ D+ WL T H G+ S +W
Sbjct: 91 ----------TSVDVDLWL---------------ITAFHEKGSLSDFLKANVVSWNELCH 125
Query: 536 IAIGVARGLAYLHHV--GSTHGH--------LVTSSILLAESLEPKIAGFGL 577
IA +ARGLAYLH G GH + + ++LL +L IA FGL
Sbjct: 126 IAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGL 177
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 90/234 (38%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAV-LP-GE---LHVAIKVL-DNAKGIDHDDAVAMFDE 456
I + K +L G G VY+ + +P GE + VAIKVL +N + + +
Sbjct: 13 ILKETELRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYV 72
Query: 457 LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHP 516
++ + P + L G C+ +LV + M G L DH
Sbjct: 73 MAGVGSPYVSRLLGICLTSTVQLVT-QLMPYGCL---------------------LDHVR 110
Query: 517 GAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG 576
+ S + NW + +A+G++YL V H L ++L+ KI FG
Sbjct: 111 ENRGRLGSQDLLNWCMQ------IAKGMSYLEDVRLVHRDLAARNVLVKSPNHVKITDFG 164
Query: 577 LRNIGVKNVGERSENETCGP------------------ESDVYCFGVILMELLT 612
L + ++ E + G +SDV+ +GV + EL+T
Sbjct: 165 LARL--LDIDETEYHADGGKVPIKWMALESILRRRFTHQSDVWSYGVTVWELMT 216
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 27/111 (24%)
Query: 529 NWVTRHRIAIGVARGLAY-------LHHVGS---THGHLVTSSILLAESLEPKIAGFGLR 578
+++ RHR + +R L Y + ++GS H L +IL+ KIA FGL
Sbjct: 99 DFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 158
Query: 579 NI--------GVKNVG---------ERSENETCGPESDVYCFGVILMELLT 612
+ V+ G E + +SDV+ FGV+L EL T
Sbjct: 159 KLLPLDKDXXVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 209
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 88/232 (37%), Gaps = 50/232 (21%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE---LHVAIKVLDNAKGIDHDDAVAMFDE--- 456
I + F K +L G G VY+ + E + + + +++ + + DE
Sbjct: 45 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILDEAYV 104
Query: 457 LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHP 516
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 105 MASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------HKD 146
Query: 517 GAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG 576
GS NW + +A+G+ YL H L ++L+ KI FG
Sbjct: 147 NIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFG 196
Query: 577 L-RNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
L + +G + +E + +SDV+ +GV + EL+T
Sbjct: 197 LAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 248
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 24/109 (22%)
Query: 522 ISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
++ PE + R I +G+ YLH+ H L ++ L + ++ KI FGL
Sbjct: 123 VTEPE-ARYFMRQTI-----QGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGLAT-K 175
Query: 582 VKNVGERSENETCGP----------------ESDVYCFGVILMELLTGK 614
++ GER ++ CG E D++ G IL LL GK
Sbjct: 176 IEFDGERKKD-LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGK 223
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 27/111 (24%)
Query: 529 NWVTRHRIAIGVARGLAY-------LHHVGS---THGHLVTSSILLAESLEPKIAGFGLR 578
+++ RHR + +R L Y + ++GS H L +IL+ KIA FGL
Sbjct: 102 DFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 161
Query: 579 NI--------GVKNVG---------ERSENETCGPESDVYCFGVILMELLT 612
+ V+ G E + +SDV+ FGV+L EL T
Sbjct: 162 KLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 212
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 24/109 (22%)
Query: 522 ISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
++ PE + R I +G+ YLH+ H L ++ L + ++ KI FGL
Sbjct: 139 VTEPE-ARYFMRQTI-----QGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGLAT-K 191
Query: 582 VKNVGERSENETCGP----------------ESDVYCFGVILMELLTGK 614
++ GER + + CG E D++ G IL LL GK
Sbjct: 192 IEFDGER-KKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGK 239
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 40/158 (25%)
Query: 79 LRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPF---- 134
L+N+ L +I NNSLK +P S +S+ N + P +N PF
Sbjct: 191 LQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGN-------NILEELPELQNLPFLTTI 242
Query: 135 --------------PSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANL- 179
PS++ LN+ N T+L +L Q L LDVS N SG + L
Sbjct: 243 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQ--SLTFLDVSENIF----SGLSELP 296
Query: 180 SKLRHLDISSCKISG--NIKPVSFLHSLKYLDVSNNSM 215
L +L+ SS +I ++ P SL+ L+VSNN +
Sbjct: 297 PNLYYLNASSNEIRSLCDLPP-----SLEELNVSNNKL 329
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 135 PSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILP 173
P ++ L +S+N+ L +L S L ++DV NN L+ LP
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 169
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 10/106 (9%)
Query: 140 LNLSSNRF-------TNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKI 192
LNL N F TNL+++ ++++L S N L I F L + HLD+S +
Sbjct: 453 LNLQGNSFQDGSISKTNLLQMVGSLEILILS-SCNLLSIDQQAFHGLRNVNHLDLSHNSL 511
Query: 193 SGN-IKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLN 237
+G+ + +S L L YL++++N++ P P LS +N+S N
Sbjct: 512 TGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 84/229 (36%), Gaps = 35/229 (15%)
Query: 60 IRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRF 119
+ +NL S + S F R + + +DL+ L G +P SL ++ L+ N F
Sbjct: 255 VESINLQKHRFSDLSSSTF-RCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSF 312
Query: 120 GGTIGFKPTSRNGPFPSVQVLNLSSN-RFTNLVK--LSQFSKLMVLDVSNNDLRILPSGF 176
S FPS++ L + N R +L L + L LD+S++D+
Sbjct: 313 DQLCQINAAS----FPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCN 368
Query: 177 ANLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISL 236
L LRH L+YL++S N G F ++ L+++
Sbjct: 369 LQLKNLRH--------------------LQYLNLSYNEPLGLEDQAFKECPQLELLDVAF 408
Query: 237 NKFTGFVGHDKYQKFGKSAFIQGGSFVFDTTKTPRPSNNHIMPHVDSSR 285
H +Q + + DT SN H++ + R
Sbjct: 409 THLHVKAPHSPFQNLHLLRVLNLSHCLLDT------SNQHLLAGLQDLR 451
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 27/111 (24%)
Query: 529 NWVTRHRIAIGVARGLAY-------LHHVGS---THGHLVTSSILLAESLEPKIAGFGLR 578
+++ RHR + +R L Y + ++GS H L +IL+ KIA FGL
Sbjct: 115 DFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 174
Query: 579 NI--------GVKNVG---------ERSENETCGPESDVYCFGVILMELLT 612
+ V+ G E + +SDV+ FGV+L EL T
Sbjct: 175 KLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 225
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 27/111 (24%)
Query: 529 NWVTRHRIAIGVARGLAY-------LHHVGS---THGHLVTSSILLAESLEPKIAGFGLR 578
+++ RHR + +R L Y + ++GS H L +IL+ KIA FGL
Sbjct: 103 DFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 162
Query: 579 NI--------GVKNVG---------ERSENETCGPESDVYCFGVILMELLT 612
+ V+ G E + +SDV+ FGV+L EL T
Sbjct: 163 KLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFT 213
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 52/216 (24%)
Query: 418 GRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGK 476
G G VY+A + A KV+D + +D + D L+ HPN++ L
Sbjct: 21 GDFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYEN 80
Query: 477 EKLVLLEFMANGDLHRWLHEL--PTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRH 534
+L+EF A G + + EL P E ++ T D
Sbjct: 81 NLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLD--------------------- 119
Query: 535 RIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENETC 594
L YLH H L +IL + K+A FG+ + +R ++
Sbjct: 120 --------ALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTXIQRRDSFIG 171
Query: 595 GP--------------------ESDVYCFGVILMEL 610
P ++DV+ G+ L+E+
Sbjct: 172 TPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEM 207
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 430 GELH---VAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFMA 486
G+LH V +KVLD A + +S+L H +L+ G C G E +++ EF+
Sbjct: 36 GQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCFCGDENILVQEFVK 95
Query: 487 NGDLHRWL 494
G L +L
Sbjct: 96 FGSLDTYL 103
>pdb|3HKO|A Chain A, Crystal Structure Of A Cdpk Kinase Domain From
Cryptosporidium Parvum, Cgd7_40
Length = 345
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 26/114 (22%)
Query: 526 EKTNWVTRHRIAIGVAR----GLAYLHHVGSTHGHLVTSSILLA--ESLEPKIAGFGLRN 579
E ++V R ++ + R L YLH+ G H + + L + +S E K+ FGL
Sbjct: 159 ESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSK 218
Query: 580 IGVK-NVGE-------------------RSENETCGPESDVYCFGVILMELLTG 613
K N GE + NE+ GP+ D + GV+L LL G
Sbjct: 219 EFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMG 272
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 40/172 (23%)
Query: 81 NMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNR------------FGGTIGFKPT 128
N +L ++ +SNN+L+ F +T SL + LS NR F + +
Sbjct: 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 204
Query: 129 SR--------------------NGPFP-SVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNN 167
S GP + +L L N T+ L + L+ +D+S N
Sbjct: 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264
Query: 168 DL-RILPSGFANLSKLRHLDISSCKISG-NI--KPVSFLHSLKYLDVSNNSM 215
+L +I+ F + +L L IS+ ++ N+ +P+ +LK LD+S+N +
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP---TLKVLDLSHNHL 313
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 24/109 (22%)
Query: 522 ISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
++ PE + R I +G+ YLH+ H L ++ L + ++ KI FGL
Sbjct: 139 VTEPE-ARYFMRQTI-----QGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGLAT-K 191
Query: 582 VKNVGERSENETCGP----------------ESDVYCFGVILMELLTGK 614
++ GER + CG E D++ G IL LL GK
Sbjct: 192 IEFDGERKKT-LCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGK 239
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 28 QELVSKAFSS--VSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFLRNMSEL 85
Q + + FS+ + F +S + ++ + +P L+ S+ L+ + ++ +++EL
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV-FENCGHLTEL 350
Query: 86 HSIDLSNNSLK--GSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFP-SVQVLNL 142
++ L N LK + +SL Q+++S+N ++ + + + S+ LN+
Sbjct: 351 ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN----SVSYDEKKGDCSWTKSLLSLNM 406
Query: 143 SSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISS 189
SSN T+ + ++ VLD+ +N ++ +P L L+ L+++S
Sbjct: 407 SSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS 453
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 153 LSQFSKLMVLDVSNNDL-RILPSGFANLSKLRHLDISSCKISG-NIKPVSFLHSLKYLDV 210
LSQ K +L++S N + + S +LSKLR L IS +I +I F L+YLD+
Sbjct: 19 LSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76
Query: 211 SNNSMNGTFPSDFPPLSGVKFLNISLNKFTGF 242
S+N + P +K L++S N F
Sbjct: 77 SHNKL---VKISCHPTVNLKHLDLSFNAFDAL 105
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 27/133 (20%)
Query: 107 QSLTQVNLSKNRFG---GTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVKLSQFSKLMVLD 163
+S Q +LS +R G G+ G + +G +V+ L+LS+NR T
Sbjct: 21 ESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-------------- 66
Query: 164 VSNNDLRILPSGFANLSKLRHLDISSCKISGNIKPVSF--LHSLKYLDVSNNSMNGTFPS 221
+SN+DL+ L+ L ++S I I+ SF L SL++LD+S N ++ S
Sbjct: 67 ISNSDLQ-------RCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118
Query: 222 DFPPLSGVKFLNI 234
F PLS + FLN+
Sbjct: 119 WFKPLSSLTFLNL 131
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 31/191 (16%)
Query: 26 KDQELVSKAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFLRNMSEL 85
KD ++ + + + TF+++ L P T + +LNL L+ + + + L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRAELTKL---QVDGTLPVL 79
Query: 86 HSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN 145
++DLS+N L+ S+P + +LT +++S NR P +Q L L N
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGN 134
Query: 146 RFTNLVK--LSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLD-----------ISSCKI 192
L L+ KL L ++NN+L LP+G N L +LD I
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFF 192
Query: 193 SGNIKPVSFLH 203
++ P +FLH
Sbjct: 193 GSHLLPFAFLH 203
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 133 PFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKI 192
P+ + LNL T L L LD+S+N L+ LP L L LD+S ++
Sbjct: 53 PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 193 SG-NIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFT 240
+ + + L L+ L + N + P P ++ L+++ N T
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 10/136 (7%)
Query: 60 IRELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRF 119
+R L L L I + K L N++ L L+ N L+ G F +L ++ L +N+
Sbjct: 65 VRYLALGGNKLHDISALKELTNLTYLI---LTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 120 GGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLVK--LSQFSKLMVLDVSNNDLRILPSG-F 176
P ++ L L N+ +L K + + L LD+ NN L+ LP G F
Sbjct: 122 QSL----PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVF 177
Query: 177 ANLSKLRHLDISSCKI 192
L++L+ L ++ ++
Sbjct: 178 DKLTQLKQLSLNDNQL 193
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 134 FPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSG-FANLSKLRHLDISSCKI 192
P+V+ L L N+ ++ L + + L L ++ N L+ LP+G F L+ L+ L + ++
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 193 SGNIKPV-SFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFTGF 242
V L +L YL + +N + F L+ + L++ N+
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSL 172
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 11 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 68
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 69 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 110
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 111 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 160
Query: 575 FG-LRNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FG + +G + +E + +SDV+ +GV + EL+T
Sbjct: 161 FGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 214
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 25/109 (22%)
Query: 529 NWVTRHRIAIG--------VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI 580
+++ RH + + + G+AYLH H L ++LL KI FGL
Sbjct: 102 DYLPRHCVGLAQLLLFAQQICEGMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLAKA 161
Query: 581 ---GVKNVGERSENET----CGPE----------SDVYCFGVILMELLT 612
G + R + ++ PE SDV+ FGV L ELLT
Sbjct: 162 VPEGHEYYRVREDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYELLT 210
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 13 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 70
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 71 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 112
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 113 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 162
Query: 575 FG-LRNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FG + +G + +E + +SDV+ +GV + EL+T
Sbjct: 163 FGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 216
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 536 IAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNI---GVKNVGERSENE 592
A + G+AYLH H L ++LL KI FGL G + R + +
Sbjct: 116 FAQQICEGMAYLHAQHYIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGD 175
Query: 593 T----CGPE----------SDVYCFGVILMELLT 612
+ PE SDV+ FGV L ELLT
Sbjct: 176 SPVFWYAPECLKECKFYYASDVWSFGVTLYELLT 209
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 79/222 (35%), Gaps = 53/222 (23%)
Query: 414 LLAEGRCGPVY--RAVLPGELHVAIKVLDNAKGIDHDDAVAMFDE-----LSRLKHPNLL 466
+L +G G V R G+L+ A+KVL + DD E L+R HP L
Sbjct: 30 VLGKGSFGKVMLARVKETGDLY-AVKVLKKDVILQDDDVECTMTEKRILSLAR-NHPFLT 87
Query: 467 PLAGYCIAGKEKLV-LLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSP 525
L C ++L ++EF+ GDL HI
Sbjct: 88 QLFC-CFQTPDRLFFVMEFVNGGDLM----------------------------FHIQKS 118
Query: 526 EKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN- 584
+ + A + L +LH G + L ++LL K+A FG+ G+ N
Sbjct: 119 RRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNG 178
Query: 585 -------------VGERSENETCGPESDVYCFGVILMELLTG 613
E + GP D + GV+L E+L G
Sbjct: 179 VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCG 220
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 31/191 (16%)
Query: 26 KDQELVSKAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFLRNMSEL 85
KD ++ + + + TF+++ L P T + +LNL L+ + + + L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRAELTKL---QVDGTLPVL 79
Query: 86 HSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN 145
++DLS+N L+ S+P + +LT +++S NR P +Q L L N
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGN 134
Query: 146 RFTNLVK--LSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLD-----------ISSCKI 192
L L+ KL L ++NN+L LP+G N L +LD I
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFF 192
Query: 193 SGNIKPVSFLH 203
++ P +FLH
Sbjct: 193 GSHLLPFAFLH 203
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 133 PFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKI 192
P+ + LNL T L L LD+S+N L+ LP L L LD+S ++
Sbjct: 53 PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 193 SG-NIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFT 240
+ + + L L+ L + N + P P ++ L+++ N T
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 31/191 (16%)
Query: 26 KDQELVSKAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFLRNMSEL 85
KD ++ + + + TF+++ L P T + +LNL L+ + + + L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRAELTKL---QVDGTLPVL 79
Query: 86 HSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN 145
++DLS+N L+ S+P + +LT +++S NR P +Q L L N
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGN 134
Query: 146 RFTNLVK--LSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLD-----------ISSCKI 192
L L+ KL L ++NN+L LP+G N L +LD I
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFF 192
Query: 193 SGNIKPVSFLH 203
++ P +FLH
Sbjct: 193 GSHLLPFAFLH 203
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 133 PFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKI 192
P+ + LNL T L L LD+S+N L+ LP L L LD+S ++
Sbjct: 53 PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 193 SG-NIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFT 240
+ + + L L+ L + N + P P ++ L+++ N T
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 24/109 (22%)
Query: 522 ISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
++ PE + R I +G+ YLH+ H L ++ L + ++ KI FGL
Sbjct: 139 VTEPE-ARYFMRQTI-----QGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGLAT-K 191
Query: 582 VKNVGERSENETCGP----------------ESDVYCFGVILMELLTGK 614
++ GER + CG E D++ G IL LL GK
Sbjct: 192 IEFDGER-KKXLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGK 239
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 54/234 (23%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRAVLPGE-----LHVAIKVLDNAKGIDHDDAVAMFDE- 456
I + F K +L G G VY+ + E + VAIK L A + + DE
Sbjct: 18 ILKETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEI--LDEA 75
Query: 457 --LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDH 514
++ + +P++ L G C+ +L+ + M G L ++ E H
Sbjct: 76 YVMASVDNPHVCRLLGICLTSTVQLIT-QLMPFGCLLDYVRE-----------------H 117
Query: 515 HPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAG 574
GS NW + +A+G+ YL H L ++L+ KI
Sbjct: 118 KDNIGSQYL----LNW------CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITD 167
Query: 575 FG-LRNIGVKNVGERSE---------------NETCGPESDVYCFGVILMELLT 612
FG + +G + +E + +SDV+ +GV + EL+T
Sbjct: 168 FGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT 221
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 136 SVQVLNLSSNRFTNLVK--LSQFSKLMVLDVSNNDLRILPSG-FANLSKLRHLDIS 188
+ QVL L N+ T L + ++L LD+ NN L +LP+G F L++L L ++
Sbjct: 39 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 94
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 136 SVQVLNLSSNRFTNLVK--LSQFSKLMVLDVSNNDLRILPSG-FANLSKLRHLDIS 188
+ QVL L N+ T L + ++L LD+ NN L +LP+G F L++L L ++
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 40/175 (22%)
Query: 78 FLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNR------------FGGTIGF 125
N +L ++ +SNN+L+ F +T SL + LS NR F + +
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 195
Query: 126 KPTSR--------------------NGPF-PSVQVLNLSSNRFTNLVKLSQFSKLMVLDV 164
S GP + +L L N T+ L + L+ +D+
Sbjct: 196 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDL 255
Query: 165 SNNDL-RILPSGFANLSKLRHLDISSCK-ISGNI--KPVSFLHSLKYLDVSNNSM 215
S N+L +I+ F + +L L IS+ + ++ N+ +P+ +LK LD+S+N +
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP---TLKVLDLSHNHL 307
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG----LRNIGVKN---VG------ 586
+ +GL YLH H + +++LL+E + K+A FG L + +K VG
Sbjct: 129 ILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMA 188
Query: 587 -ERSENETCGPESDVYCFGVILMELLTGK 614
E + ++D++ G+ +EL G+
Sbjct: 189 PEVIQQSAYDSKADIWSLGITAIELAKGE 217
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 115/307 (37%), Gaps = 70/307 (22%)
Query: 395 NYLTFKDLIAATSHFGKESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAVAMF 454
N + F D G S RC +++A + A+K++D +K D
Sbjct: 16 NSIQFTDGYEVKEDIGVGSYSVCKRC--IHKAT---NMEFAVKIIDKSK----RDPTEEI 66
Query: 455 DELSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDL-HRWLHELPTGEPNVEDWSTDTW 512
+ L R +HPN++ L GK V+ E M G+L + L +
Sbjct: 67 EILLRYGQHPNIITLKDVYDDGKYVYVVTELMKGGELLDKILRQ---------------- 110
Query: 513 DHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLA-ESLEP- 570
S E + + + + + YLH G H L S+IL ES P
Sbjct: 111 -------KFFSEREASA------VLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPE 157
Query: 571 --KIAGFGL-RNIGVKN-------------VGERSENETCGPESDVYCFGVILMELLTG- 613
+I FG + + +N E E + D++ GV+L +LTG
Sbjct: 158 SIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGY 217
Query: 614 ---KRGTDDCVKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKR 670
G DD + + L + G+G F L G +SV++ + L V + D P +R
Sbjct: 218 TPFANGPDDTPEEI--LARIGSG----KFSLSGGYWNSVSDTAKDL-VSKMLHVD-PHQR 269
Query: 671 PTMQQVL 677
T VL
Sbjct: 270 LTAALVL 276
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 31/191 (16%)
Query: 26 KDQELVSKAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFLRNMSEL 85
KD ++ + + + TF+++ L P T + +LNL L+ + + + L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRCELTKL---QVDGTLPVL 79
Query: 86 HSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN 145
++DLS+N L+ S+P + +LT +++S NR P +Q L L N
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGN 134
Query: 146 RFTNLVK--LSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLD-----------ISSCKI 192
L L+ KL L ++NN L LP+G N L +LD I
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFF 192
Query: 193 SGNIKPVSFLH 203
++ P +FLH
Sbjct: 193 GSHLLPFAFLH 203
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 133 PFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKI 192
P+ + LNL T L L LD+S+N L+ LP L L LD+S ++
Sbjct: 53 PYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 193 SG-NIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFT 240
+ + + L L+ L + N + P P ++ L+++ N+ T
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 15/130 (11%)
Query: 134 FPSVQVLNLSSNRFTNLVKLSQFSKL-----MVLDVSNNDLRILPSGFANLSKLRHLDIS 188
F ++ + +S N +++ FS L + ++ +NN L I P F NL L++L IS
Sbjct: 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112
Query: 189 SCKISGNIKPVSFLHSLK--YLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFTGFVGHD 246
+ I ++ V +HSL+ LD+ +N T + F+ +S ++ +
Sbjct: 113 NTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN-------SFVGLSFESVILWLNKN 164
Query: 247 KYQKFGKSAF 256
Q+ SAF
Sbjct: 165 GIQEIHNSAF 174
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 31/191 (16%)
Query: 26 KDQELVSKAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFLRNMSEL 85
KD ++ + + + TF+++ L P T + +LNL L+ + + + L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRCELTKL---QVDGTLPVL 79
Query: 86 HSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN 145
++DLS+N L+ S+P + +LT +++S NR P +Q L L N
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGN 134
Query: 146 RFTNLVK--LSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLD-----------ISSCKI 192
L L+ KL L ++NN L LP+G N L +LD I
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFF 192
Query: 193 SGNIKPVSFLH 203
++ P +FLH
Sbjct: 193 GSHLLPFAFLH 203
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 133 PFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKI 192
P+ + LNL T L L LD+S+N L+ LP L L LD+S ++
Sbjct: 53 PYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 193 SG-NIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFT 240
+ + + L L+ L + N + P P ++ L+++ N+ T
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 31/191 (16%)
Query: 26 KDQELVSKAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFLRNMSEL 85
KD ++ + + + TF+++ L P T + +LNL L+ + + + L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRCELTKL---QVDGTLPVL 79
Query: 86 HSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN 145
++DLS+N L+ S+P + +LT +++S NR P +Q L L N
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGN 134
Query: 146 RFTNLVK--LSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLD-----------ISSCKI 192
L L+ KL L ++NN+L LP+G N L +LD I
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFF 192
Query: 193 SGNIKPVSFLH 203
++ P +FLH
Sbjct: 193 GSHLLPFAFLH 203
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG----LRNIGVKN---VG------ 586
+ +GL YLH H + +++LL+E E K+A FG L + +K VG
Sbjct: 128 ILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMA 187
Query: 587 -ERSENETCGPESDVYCFGVILMELLTGK 614
E + ++D++ G+ +EL G+
Sbjct: 188 PEVIKQSAYDSKADIWSLGITAIELARGE 216
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 31/191 (16%)
Query: 26 KDQELVSKAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFLRNMSEL 85
KD ++ + + + TF+++ L P T + +LNL L+ + + + L
Sbjct: 32 KDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRCELTKL---QVDGTLPVL 80
Query: 86 HSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN 145
++DLS+N L+ S+P + +LT +++S NR P +Q L L N
Sbjct: 81 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGN 135
Query: 146 RFTNLVK--LSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLD-----------ISSCKI 192
L L+ KL L ++NN+L LP+G N L +LD I
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFF 193
Query: 193 SGNIKPVSFLH 203
++ P +FLH
Sbjct: 194 GSHLLPFAFLH 204
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG----LRNIGVKN---VG------ 586
+ +GL YLH H + +++LL+E E K+A FG L + +K VG
Sbjct: 113 ILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMA 172
Query: 587 -ERSENETCGPESDVYCFGVILMELLTGK 614
E + ++D++ G+ +EL G+
Sbjct: 173 PEVIKQSAYDSKADIWSLGITAIELARGE 201
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 89/234 (38%), Gaps = 59/234 (25%)
Query: 406 TSHFGKESL-----LAEGRCGPVYRA-VLPGELHVAIKVLDNAK----GIDHDDAVAMFD 455
T HF + L +G+ G VY A VA+KVL ++ G++H + +
Sbjct: 17 TRHFTIDDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREI-E 75
Query: 456 ELSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHH 515
+ L HPN+L L Y + ++LE+ G+L++ L + + T+D
Sbjct: 76 IQAHLHHPNILRLYNYFYDRRRIYLILEYAPRGELYKELQK------------SCTFDEQ 123
Query: 516 PGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGF 575
A I +A L Y H H + ++LL E KIA F
Sbjct: 124 RTAT----------------IMEELADALMYCHGKKVIHRDIKPENLLLGLKGELKIADF 167
Query: 576 G----------------LRNIGVKNVGERSENETCGPESDVYCFGVILMELLTG 613
G L + + + R NE D++C GV+ ELL G
Sbjct: 168 GWSVHAPSLRRKTMCGTLDYLPPEMIEGRMHNEKV----DLWCIGVLCYELLVG 217
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG----LRNIGVKN---VG------ 586
+ +GL YLH H + +++LL+E E K+A FG L + +K VG
Sbjct: 113 ILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMA 172
Query: 587 -ERSENETCGPESDVYCFGVILMELLTGK 614
E + ++D++ G+ +EL G+
Sbjct: 173 PEVIKQSAYDSKADIWSLGITAIELARGE 201
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG----LRNIGVKN---VG------ 586
+ +GL YLH H + +++LL+E E K+A FG L + +K VG
Sbjct: 133 ILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMA 192
Query: 587 -ERSENETCGPESDVYCFGVILMELLTGK 614
E + ++D++ G+ +EL G+
Sbjct: 193 PEVIKQSAYDSKADIWSLGITAIELARGE 221
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Query: 86 HSIDLSNNSLKGSV----PGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLN 141
HS+DLS+NSL+ +V P WS+ +L +NLS G + + P ++VL+
Sbjct: 227 HSLDLSHNSLRATVNPSAPRCMWSS-ALNSLNLS------FAGLEQVPKGLPA-KLRVLD 278
Query: 142 LSSNRFTNLVKLSQFSKLMVLDVSNN 167
LSSNR + + ++ L + N
Sbjct: 279 LSSNRLNRAPQPDELPEVDNLTLDGN 304
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 31/191 (16%)
Query: 26 KDQELVSKAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFLRNMSEL 85
KD ++ + + + TF+++ L P T + +LNL L+ + + + L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRCELTKL---QVDGTLPVL 79
Query: 86 HSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN 145
++DLS+N L+ S+P + +LT +++S NR P +Q L L N
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGN 134
Query: 146 RFTNLVK--LSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLD-----------ISSCKI 192
L L+ KL L ++NN L LP+G N L +LD I
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFF 192
Query: 193 SGNIKPVSFLH 203
++ P +FLH
Sbjct: 193 GSHLLPFAFLH 203
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 133 PFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKI 192
P+ + LNL T L L LD+S+N L+ LP L L LD+S ++
Sbjct: 53 PYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 193 SG-NIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFT 240
+ + + L L+ L + N + P P ++ L+++ N+ T
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 38/171 (22%)
Query: 457 LSRLKHPNLLPLAGYCIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHH 515
+++L+H NL+ L G + K L ++ E+MA G L +L
Sbjct: 68 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR-------------------- 107
Query: 516 PGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGF 575
G + + + ++ V + YL H L ++L++E K++ F
Sbjct: 108 -SRGRSVLGGD-----CLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDF 161
Query: 576 GLRNIG--VKNVG---------ERSENETCGPESDVYCFGVILMELLTGKR 615
GL ++ G E + +SDV+ FG++L E+ + R
Sbjct: 162 GLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGR 212
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 82/191 (42%), Gaps = 31/191 (16%)
Query: 26 KDQELVSKAFSSVSTFNISWLKPTNLNGSNPSTPIRELNLSSRNLSGIISWKFLRNMSEL 85
KD ++ + + + TF+++ L P T + +LNL L+ + + + L
Sbjct: 31 KDTTILHLSENLLYTFSLATLMP--------YTRLTQLNLDRCELTKL---QVDGTLPVL 79
Query: 86 HSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSN 145
++DLS+N L+ S+P + +LT +++S NR P +Q L L N
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL----PLGALRGLGELQELYLKGN 134
Query: 146 RFTNLVK--LSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLD-----------ISSCKI 192
L L+ KL L ++NN L LP+G N L +LD I
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN--GLENLDTLLLQENSLYTIPKGFF 192
Query: 193 SGNIKPVSFLH 203
++ P +FLH
Sbjct: 193 GSHLLPFAFLH 203
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 133 PFPSVQVLNLSSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLDISSCKI 192
P+ + LNL T L L LD+S+N L+ LP L L LD+S ++
Sbjct: 53 PYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112
Query: 193 SG-NIKPVSFLHSLKYLDVSNNSMNGTFPSDFPPLSGVKFLNISLNKFT 240
+ + + L L+ L + N + P P ++ L+++ N+ T
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 535 RIAIGVARGLAYL---HHVGSTHGHLVTSSILLAESLEPKIAGFGLRN----------IG 581
+++I V RGLAYL H + H + S+IL+ E K+ FG+ +G
Sbjct: 118 KVSIAVLRGLAYLREKHQI--MHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVG 175
Query: 582 VKN--VGERSENETCGPESDVYCFGVILMELLTGK 614
++ ER + +SD++ G+ L+EL G+
Sbjct: 176 TRSYMAPERLQGTHYSVQSDIWSMGLSLVELAVGR 210
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 38/171 (22%)
Query: 457 LSRLKHPNLLPLAGYCIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHH 515
+++L+H NL+ L G + K L ++ E+MA G L +L
Sbjct: 53 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR-------------------- 92
Query: 516 PGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGF 575
G + + + ++ V + YL H L ++L++E K++ F
Sbjct: 93 -SRGRSVLGGD-----CLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDF 146
Query: 576 GLRNIG--VKNVG---------ERSENETCGPESDVYCFGVILMELLTGKR 615
GL ++ G E + +SDV+ FG++L E+ + R
Sbjct: 147 GLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGR 197
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 38/171 (22%)
Query: 457 LSRLKHPNLLPLAGYCIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHH 515
+++L+H NL+ L G + K L ++ E+MA G L +L
Sbjct: 240 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR-------------------- 279
Query: 516 PGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGF 575
G + + + ++ V + YL H L ++L++E K++ F
Sbjct: 280 -SRGRSVLGGD-----CLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDF 333
Query: 576 GLRNIG--VKNVG---------ERSENETCGPESDVYCFGVILMELLTGKR 615
GL ++ G E + +SDV+ FG++L E+ + R
Sbjct: 334 GLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGR 384
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 38/171 (22%)
Query: 457 LSRLKHPNLLPLAGYCIAGKEKL-VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHH 515
+++L+H NL+ L G + K L ++ E+MA G L +L
Sbjct: 59 MTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR-------------------- 98
Query: 516 PGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGF 575
G + + + ++ V + YL H L ++L++E K++ F
Sbjct: 99 -SRGRSVLGGD-----CLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDF 152
Query: 576 GLR----------NIGVKNVGERSENETC-GPESDVYCFGVILMELLTGKR 615
GL + VK + E +SDV+ FG++L E+ + R
Sbjct: 153 GLTKEASSTQDTGKLPVKWTAPEALREAAFSTKSDVWSFGILLWEIYSFGR 203
>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57
Length = 360
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 133 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 174
>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75
pdb|4FV1|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek4
pdb|4FV2|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek5
pdb|4FV3|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek6
pdb|4FV4|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek7
pdb|4FV5|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek9
pdb|4FV8|A Chain A, Crystal Structure Of The Erk2 Complexed With E63
pdb|4FV9|A Chain A, Crystal Structure Of The Erk2 Complexed With E71
pdb|4G6N|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 133 ILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVA 174
>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2
Length = 364
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 137 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 178
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 45/174 (25%)
Query: 457 LSRLKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHP 516
L ++ HPN++ L + +++LE ++ G+L +L
Sbjct: 69 LRQVLHPNIITLHDVYENRTDVVLILELVSGGELFDFL---------------------- 106
Query: 517 GAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEP----KI 572
+S E T+++ + + G+ YLH H L +I+L + P K+
Sbjct: 107 AQKESLSEEEATSFIKQ------ILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKL 160
Query: 573 AGFGLRN-----IGVKNVG--------ERSENETCGPESDVYCFGVILMELLTG 613
FGL + + KN+ E E G E+D++ GVI LL+G
Sbjct: 161 IDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 214
>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|C Chain C, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 364
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 137 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 178
>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4FMQ|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 135 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 176
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 162 LDVSNNDLRILP-SGFANLSKLRHLDISSCKISGNIKPVSF--LHSLKYLDVSNNSMNGT 218
LD+SNN + + S L+ L ++S I I+ SF L SL++LD+S N ++
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNL 89
Query: 219 FPSDFPPLSGVKFLNISLNKFTGFVGHDKYQKFGKSAFIQGGSF 262
S F PLS + FLN+ N + + K ++ G+
Sbjct: 90 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 133
>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2
Length = 365
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 138 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 179
>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94
pdb|4G6O|A Chain A, Crystal Structure Of The Erk2
Length = 360
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 133 ILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVA 174
>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
pdb|4H3P|D Chain D, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 135 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 176
>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX
Length = 358
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 131 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 172
>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 365
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 138 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 179
>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In
Complex With
(4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin
2-Yl]amino}phenyl)acetic Acid
Length = 366
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 139 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 180
>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
pdb|3C9W|B Chain B, Crystal Structure Of Erk-2 With Hypothemycin Covalently
Bound
Length = 357
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 130 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 171
>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|2FYS|A Chain A, Crystal Structure Of Erk2 Complex With Kim Peptide Derived
From Mkp3
pdb|1ERK|A Chain A, Structure Of Signal-Regulated Kinase
pdb|3ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2SB220025
pdb|4ERK|A Chain A, The Complex Structure Of The Map Kinase Erk2OLOMOUCINE
pdb|3QYI|A Chain A, Map Kinase Erk2 Complexed With
1,1-Dioxo-2,3-Dihydrothiophen-3-Yl Benzenesulfonate
Length = 364
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 137 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 178
>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e)
Length = 358
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 131 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 172
>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A
Pyrazolopyridazine Derivative
pdb|3W55|A Chain A, The Structure Of Erk2 In Complex With Fr148083
Length = 368
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 141 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 182
>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule
Inhibitor
Length = 368
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 133 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 174
>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine
Mutation At Position 52
Length = 364
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 137 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 178
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 134 FPSVQVLNLSSNRFTNLVKLSQFSKL-----MVLDVSNNDLRILPSGFANLSKLRHLDIS 188
F ++ + +S N +++ FS L + ++ +NN L I P F NL L++L IS
Sbjct: 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112
Query: 189 SCKISGNIKPVSFLHSLK--YLDVSNN 213
+ I ++ V +HSL+ LD+ +N
Sbjct: 113 NTGIK-HLPDVHKIHSLQKVLLDIQDN 138
>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|3QYZ|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor
pdb|4GT3|A Chain A, Atp-Bound Form Of The Erk2 Kinase
pdb|4GVA|A Chain A, Adp-Bound Form Of The Erk2 Kinase
Length = 364
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 137 ILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVA 178
>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2
Length = 364
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 137 ILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVA 178
>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol
pdb|4FUY|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek2
pdb|4FV0|A Chain A, Crystal Structure Of The Erk2 Complexed With Ek3
Length = 360
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 133 ILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKIXDFGLARVA 174
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 37/172 (21%)
Query: 63 LNLSSRNLSGI-ISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGG 121
L+LS NLS + W R ++ LHS+ LS+N L F S+++
Sbjct: 44 LDLSHNNLSRLRAEWTPTR-LTNLHSLLLSHNHLN------FISSEAFV----------- 85
Query: 122 TIGFKPTSRNGPFPSVQVLNLSSNRFTNLVK--LSQFSKLMVLDVSNNDLRILP-SGFAN 178
P P+++ L+LSSN L + S L VL + NN + ++ + F +
Sbjct: 86 -----------PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134
Query: 179 LSKLRHLDISSCKISGN----IKPVSFLHSLKYLDVSNNSMNGTFPSDFPPL 226
+++L+ L +S +IS IK + L L LD+S+N + +D L
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 19/136 (13%)
Query: 58 TPIRELNLSSRNLS----GIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVN 113
TP R NL S LS IS + + L +DLS+N L F Q+L +
Sbjct: 59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118
Query: 114 LSKNRFGGTIGFKPTSRNG--PFPSVQVLNLSSNRFTNL-VKL----SQFSKLMVLDVSN 166
L N RN +Q L LS N+ + V+L ++ KLM+LD+S+
Sbjct: 119 LYNNHIV------VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172
Query: 167 NDLRILPSGFANLSKL 182
N L+ LP +L KL
Sbjct: 173 NKLKKLP--LTDLQKL 186
>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With
N,n-dimethyl-4-(4-
Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide
pdb|2OJI|A Chain A, Crystal Structure Of Erk2 In Complex With
N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2OJJ|A Chain A, Crystal Structure Of Erk2 In Complex With (S)-N-(1-(3-
Chloro-4-Fluorophenyl)-2-Hydroxyethyl)-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|3I5Z|A Chain A, Crystal Structure Of Erk2 Bound To
(S)-N-(2-Hydroxy-1-Phenylethyl)-4-
(5-Methyl-2-(Phenylamino)pyrimidin-4-Yl)-1h-Pyrrole-2-
Carboxamide
pdb|3I60|A Chain A, Crystal Structure Of Erk2 Bound To
(s)-4-(2-(2-chlorophenylamino)-5-
Methylpyrimidin-4-yl)-n-(2-hydroxy-1-phenylethyl)-1h-
pyrrole-2- Carboxamide
Length = 380
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 153 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVA 194
>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed
With A Specific Inhibitor Of Human P38 Map Kinase
Length = 380
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 153 ILRGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVA 194
>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
Length = 442
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
RGL Y+H H L S++L+ E+ E KI FG+
Sbjct: 170 RGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGM 205
>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
pdb|2ZOQ|B Chain B, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
Length = 382
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++L+ + + KI FGL I
Sbjct: 153 ILRGLKYIHSANVLHRDLKPSNLLINTTCDLKICDFGLARIA 194
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG----LRNIGVKN---VG------ 586
+ +GL YLH H + +++LL+E + K+A FG L + +K VG
Sbjct: 125 ILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNXFVGTPFWMA 184
Query: 587 -ERSENETCGPESDVYCFGVILMELLTGK 614
E + ++D++ G+ +EL G+
Sbjct: 185 PEVIKQSAYDFKADIWSLGITAIELAKGE 213
>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
Length = 398
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
RGL Y+H H L S++L+ E+ E KI FG+
Sbjct: 169 RGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGM 204
>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk
Docking Peptide
Length = 362
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIG 581
+ RGL Y+H H L S++LL + + KI FGL +
Sbjct: 135 ILRGLKYIHSANVLHRDLKPSNLLLNTTSDLKICDFGLARVA 176
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 23/114 (20%)
Query: 520 SHISSPEKTNWVTRHRIAIGVAR---GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFG 576
+H+S E+ T H + I V L +LH +G + + +ILL + + FG
Sbjct: 148 THLSQRER---FTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFG 204
Query: 577 LRNIGVKNVGERSEN-----ETCGPE------------SDVYCFGVILMELLTG 613
L V + ER+ + E P+ D + GV++ ELLTG
Sbjct: 205 LSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTG 258
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRN---------------IGVKNV- 585
+ L + H G H + ++IL++ + K+ FG+ IG
Sbjct: 127 QALNFSHQNGIIHRDVKPANILISATNAVKVVDFGIARAIADSGNSVXQTAAVIGTAQYL 186
Query: 586 -GERSENETCGPESDVYCFGVILMELLTGK 614
E++ ++ SDVY G +L E+LTG+
Sbjct: 187 SPEQARGDSVDARSDVYSLGCVLYEVLTGE 216
>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 7 Activated Mutant (S287d, T291d)
Length = 318
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 25/108 (23%)
Query: 535 RIAIGVARGLAYLHHV-GSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENET 593
++ + + + L YL G H + S+ILL E + K+ FG I + V +++++ +
Sbjct: 128 KMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFG---ISGRLVDDKAKDRS 184
Query: 594 CG------PE---------------SDVYCFGVILMELLTGKRGTDDC 620
G PE +DV+ G+ L+EL TG+ +C
Sbjct: 185 AGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNC 232
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 502 PNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSS 561
PNVE + D I + H AIG GL L HV G + +
Sbjct: 273 PNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAET 332
Query: 562 ILLAESL--------------EPKIAGFGLRNIGVKNVG 586
I AE+L +P +A FGL +N G
Sbjct: 333 IAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEG 371
>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent
Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In
Complex With Sto-609
Length = 298
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 540 VARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRN 579
+ +G+ YLH+ H + S++L+ E KIA FG+ N
Sbjct: 146 LIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSN 185
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 502 PNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSS 561
PNVE + D I + H AIG GL L HV G + +
Sbjct: 271 PNVEGYGLDKAGVALTDRKAIGVDDYXRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAET 330
Query: 562 ILLAESL--------------EPKIAGFGLRNIGVKNVG 586
I AE+L +P +A FGL +N G
Sbjct: 331 IAGAETLTLGDHRXLPRATFCQPNVASFGLTEQQARNEG 369
>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
pdb|3OZ6|B Chain B, Crystal Structure Of Mapk From Cryptosporidium Parvum,
Cgd2_1960
Length = 388
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 513 DHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKI 572
D H ++I P +V I + + YLH G H + S+ILL K+
Sbjct: 96 DLHAVIRANILEPVHKQYVVYQLIKV-----IKYLHSGGLLHRDMKPSNILLNAECHVKV 150
Query: 573 AGFGL 577
A FGL
Sbjct: 151 ADFGL 155
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 529 NWVTRHRIAI---GVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
N + H + + + RGLAY H H L ++L+ E E K+A FGL
Sbjct: 95 NIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGL 146
>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map
Kinase Jnk1
Length = 370
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIG--------VKNVGERSENET 593
G+ +LH G H L S+I++ KI FGL R G V R+
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVI 197
Query: 594 CG----PESDVYCFGVILMELLTGKR---GTDDCVKWVRKLVKEGAGGDALDFRLKL 643
G D++ GVI+ E++ G GTD +W + V E G + +F KL
Sbjct: 198 LGMGYKENVDIWSVGVIMGEMIKGGVLFPGTDHIDQWNK--VIEQLGTPSPEFMKKL 252
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 86/230 (37%), Gaps = 45/230 (19%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRA--VLPGELHVAIKV-LDNAKGIDHDDAVAMFDELSR 459
+ + +F K + EG G VY+A L GE+ K+ LD A+ L
Sbjct: 2 LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 460 LKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAG 519
L HPN++ L I + KL L+ + DL +++ D S T P
Sbjct: 62 LNHPNIVKLLD-VIHTENKLYLVFEFLSMDLKKFM-----------DASALTGIPLPLIK 109
Query: 520 SHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-R 578
S++ + +GLA+ H H L ++L+ K+A FGL R
Sbjct: 110 SYL---------------FQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLAR 154
Query: 579 NIGVKNVGERSENETC---GPE-----------SDVYCFGVILMELLTGK 614
GV E T PE D++ G I E++T +
Sbjct: 155 AFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204
>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map
Kinase Jnk1
Length = 370
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNIG--------VKNVGERSENET 593
G+ +LH G H L S+I++ KI FGL R G V R+
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVI 197
Query: 594 CG----PESDVYCFGVILMELLTGKR---GTDDCVKWVRKLVKEGAGGDALDFRLKL 643
G D++ GVI+ E++ G GTD +W + V E G + +F KL
Sbjct: 198 LGMGYKENVDIWSVGVIMGEMIKGGVLFPGTDHIDQWNK--VIEQLGTPSPEFMKKL 252
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 107 QSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLV--KLSQFSKLMVLDV 164
+++T++ L +N TI P P+ ++ ++LS+N+ + L L L +
Sbjct: 32 ETITEIRLEQN----TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87
Query: 165 SNNDLRILP-SGFANLSKLRHLDISSCKISG-NIKPVSFLHSLKYLDVSNNSMNGTFPSD 222
N + LP S F L L+ L +++ KI+ + LH+L L + +N +
Sbjct: 88 YGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147
Query: 223 FPPLSGVKFLNISLNKF 239
F PL ++ ++++ N F
Sbjct: 148 FSPLRAIQTMHLAQNPF 164
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 107 QSLTQVNLSKNRFGGTIGFKPTSRNGPFPSVQVLNLSSNRFTNLV--KLSQFSKLMVLDV 164
+++T++ L +N TI P P+ ++ ++LS+N+ + L L L +
Sbjct: 32 ETITEIRLEQN----TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87
Query: 165 SNNDLRILP-SGFANLSKLRHLDISSCKISG-NIKPVSFLHSLKYLDVSNNSMNGTFPSD 222
N + LP S F L L+ L +++ KI+ + LH+L L + +N +
Sbjct: 88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147
Query: 223 FPPLSGVKFLNISLNKF 239
F PL ++ ++++ N F
Sbjct: 148 FSPLRAIQTMHLAQNPF 164
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRN---------------IGVKNV- 585
+ L + H G H + ++I+++ + K+ FG+ IG
Sbjct: 127 QALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYL 186
Query: 586 -GERSENETCGPESDVYCFGVILMELLTGK 614
E++ ++ SDVY G +L E+LTG+
Sbjct: 187 SPEQARGDSVDARSDVYSLGCVLYEVLTGE 216
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRN---------------IGVKNV- 585
+ L + H G H + ++I+++ + K+ FG+ IG
Sbjct: 127 QALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYL 186
Query: 586 -GERSENETCGPESDVYCFGVILMELLTGK 614
E++ ++ SDVY G +L E+LTG+
Sbjct: 187 SPEQARGDSVDARSDVYSLGCVLYEVLTGE 216
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 18/89 (20%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNVGERSENETCG------ 595
+GL YLH + H + +ILL K+A FG+ + +R N G
Sbjct: 136 KGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDXMAKR--NXVIGTPFWMA 193
Query: 596 PE----------SDVYCFGVILMELLTGK 614
PE +D++ G+ +E+ GK
Sbjct: 194 PEVIQEIGYNCVADIWSLGITAIEMAEGK 222
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRN---------------IGVKNV- 585
+ L + H G H + ++I+++ + K+ FG+ IG
Sbjct: 127 QALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYL 186
Query: 586 -GERSENETCGPESDVYCFGVILMELLTGK 614
E++ ++ SDVY G +L E+LTG+
Sbjct: 187 SPEQARGDSVDARSDVYSLGCVLYEVLTGE 216
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRN---------------IGVKNV- 585
+ L + H G H + ++I+++ + K+ FG+ IG
Sbjct: 127 QALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYL 186
Query: 586 -GERSENETCGPESDVYCFGVILMELLTGK 614
E++ ++ SDVY G +L E+LTG+
Sbjct: 187 SPEQARGDSVDARSDVYSLGCVLYEVLTGE 216
>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2
pdb|3E7O|B Chain B, Crystal Structure Of Jnk2
Length = 360
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 18/117 (15%)
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV---------GERSENET 593
G+ +LH G H L S+I++ KI FGL N R+
Sbjct: 136 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTASTNFMMTPYVVTRYYRAPEVI 195
Query: 594 CG----PESDVYCFGVILMELLTGK---RGTDDCVKWVRKLVKEGAGGDALDFRLKL 643
G D++ G I+ EL+ G +GTD +W + V E G + +F L
Sbjct: 196 LGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNK--VIEQLGTPSAEFMAAL 250
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 535 RIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
R+ + L+Y+H G H +L +I + ES KI FGL
Sbjct: 120 RLFRQILEALSYIHSQGIIHRNLKPXNIFIDESRNVKIGDFGL 162
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRN---------------IGVKNV- 585
+ L + H G H + ++I+++ + K+ FG+ IG
Sbjct: 144 QALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYL 203
Query: 586 -GERSENETCGPESDVYCFGVILMELLTGK 614
E++ ++ SDVY G +L E+LTG+
Sbjct: 204 SPEQARGDSVDARSDVYSLGCVLYEVLTGE 233
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 85/228 (37%), Gaps = 45/228 (19%)
Query: 405 ATSHFGKESLLAEGRCGPVYRA--VLPGELHVAIKV-LDNAKGIDHDDAVAMFDELSRLK 461
+ +F K + EG G VY+A L GE+ K+ LD A+ L L
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 462 HPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSH 521
HPN++ L I + KL L+ + DL +++ D S T P S+
Sbjct: 62 HPNIVKLLD-VIHTENKLYLVFEFLSMDLKKFM-----------DASALTGIPLPLIKSY 109
Query: 522 ISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-RNI 580
+ + +GLA+ H H L ++L+ K+A FGL R
Sbjct: 110 L---------------FQLLQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAF 154
Query: 581 GVKNVGERSENETC---GPE-----------SDVYCFGVILMELLTGK 614
GV E T PE D++ G I E++T +
Sbjct: 155 GVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 202
>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs
Resolution)
Length = 362
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 31/125 (24%)
Query: 457 LSRLKHPNLLPLAGYCIAGKE----KLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTW 512
L+ HPN+L L + +E KL L+ + DL + +H+
Sbjct: 83 LNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRI------------- 129
Query: 513 DHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKI 572
+ SP+ + H + GL LH G H L +ILLA++ + I
Sbjct: 130 ---------VISPQHIQYFMYH-----ILLGLHVLHEAGVVHRDLHPGNILLADNNDITI 175
Query: 573 AGFGL 577
F L
Sbjct: 176 CDFNL 180
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 15/133 (11%)
Query: 62 ELNLSSRNLSGIISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFGG 121
EL L++ + + + + + +L I+ SNN + G F + ++ L+ NR
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 122 TIG--FKPTSRNGPFPSVQVLNLSSNRFT-----NLVKLSQFSKLMVLDVSNNDLRILPS 174
FK S++ L L SNR T + + LS L + D N + P
Sbjct: 96 VQHKMFK------GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD--NQITTVAPG 147
Query: 175 GFANLSKLRHLDI 187
F L L L++
Sbjct: 148 AFDTLHSLSTLNL 160
>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With
Sb203580
Length = 362
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 31/125 (24%)
Query: 457 LSRLKHPNLLPLAGYCIAGKE----KLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTW 512
L+ HPN+L L + +E KL L+ + DL + +H+
Sbjct: 83 LNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRI------------- 129
Query: 513 DHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKI 572
+ SP+ + H + GL LH G H L +ILLA++ + I
Sbjct: 130 ---------VISPQHIQYFMYH-----ILLGLHVLHEAGVVHRDLHPGNILLADNNDITI 175
Query: 573 AGFGL 577
F L
Sbjct: 176 CDFNL 180
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 74 ISWKFLRNMSELHSIDLSNNSLKGSVPGWFWSTQSLTQVNLSKNRFG--------GTIGF 125
+ W +S L + L++N L PG F +L ++L+ NR +
Sbjct: 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEI 530
Query: 126 KPTSRN-------GPFPSVQVLNLSSNRFTNLVKLSQF 156
SRN F S+ VL+++ N+F +LS F
Sbjct: 531 LDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTF 568
>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796
pdb|3NPC|B Chain B, Crystal Structure Of Jnk2 Complexed With Birb796
Length = 364
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 18/117 (15%)
Query: 543 GLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKNV---------GERSENET 593
G+ +LH G H L S+I++ KI FGL N R+
Sbjct: 138 GIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVI 197
Query: 594 CG----PESDVYCFGVILMELLTGK---RGTDDCVKWVRKLVKEGAGGDALDFRLKL 643
G D++ G I+ EL+ G +GTD +W + V E G + +F L
Sbjct: 198 LGMGYAANVDIWSVGCIMGELVKGCVIFQGTDHIDQWNK--VIEQLGTPSAEFMAAL 252
>pdb|3G04|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Thyroid- Stimulating Autoantibody
pdb|2XWT|C Chain C, Crystal Structure Of The Tsh Receptor In Complex With A
Blocking Type Tshr Autoantibody
Length = 239
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 34/159 (21%)
Query: 135 PSVQVLNL--------SSNRFTNLVKLSQFSKLMVLDVSNNDLRILPSGFANLSKLRHLD 186
PS Q L L S+ F+NL +S+ + +DV+ L F NLSK+ H++
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRI--YVSIDVTLQQLE--SHSFYNLSKVTHIE 86
Query: 187 ISSCKISGNIKPVSF--LHSLKYLDVSNNSMNGTFPSDFPPLSGV--------------- 229
I + + I P + L LK+L + N + FP L+ V
Sbjct: 87 IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-----FPDLTKVYSTDIFFILEITDNP 141
Query: 230 KFLNISLNKFTGFVGHDKYQKFGKSAFIQGGSFVFDTTK 268
+I +N F G K + F + F+ TK
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK 180
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 22/147 (14%)
Query: 150 LVKLSQFSKLMVLDVSNNDLRILPSGF------ANLSKLRHLDISSCKISGNIKPVSFLH 203
+VKL++FS+ S++ + +L SG AN S L++ S + + KP++ L
Sbjct: 6 MVKLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ 65
Query: 204 ---SLKYLDVSNNS--MNGTFPSDFPPLSGVKFLNISLNKFTGFVGHD------KYQKFG 252
LD S+N+ + G + L N ++N F H K+
Sbjct: 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ 125
Query: 253 KSAFIQGGS----FVFDTTK-TPRPSN 274
+ GG+ F++D K T PSN
Sbjct: 126 DNVLASGGNNGEIFIWDMNKCTESPSN 152
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 19/92 (20%)
Query: 542 RGLAYLHHVGSTHGHLVTSSILL-AESLEPKIAGFGLRNI-------------GVKNVGE 587
RGL Y+H H L +++ + E L KI FGL I G+
Sbjct: 131 RGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWY 190
Query: 588 RSENETCGPES-----DVYCFGVILMELLTGK 614
RS P + D++ G I E+LTGK
Sbjct: 191 RSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGK 222
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 156 FSKLMVLDVSNNDLRILPSG-FANLSKLRHLDISSCKISGNIKPVSFLHSLKYLDVSNNS 214
++L VLD+ N L +LPS F L L+ L + K++ + + L L +L + N
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ 146
Query: 215 MNGTFPSDFPPLSGV 229
+ F LS +
Sbjct: 147 LKSIPHGAFDRLSSL 161
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 85/230 (36%), Gaps = 45/230 (19%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRA--VLPGELHVAIKV-LDNAKGIDHDDAVAMFDELSR 459
+ + +F K + EG G VY+A L GE+ K+ LD A+ L
Sbjct: 2 LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 61
Query: 460 LKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAG 519
L HPN++ L I + KL L+ + DL ++ D S T P
Sbjct: 62 LNHPNIVKLLD-VIHTENKLYLVFEFLSMDLKDFM-----------DASALTGIPLPLIK 109
Query: 520 SHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-R 578
S++ + +GLA+ H H L ++L+ K+A FGL R
Sbjct: 110 SYL---------------FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 154
Query: 579 NIGVKNVGERSENETC---GPE-----------SDVYCFGVILMELLTGK 614
GV E T PE D++ G I E++T +
Sbjct: 155 AFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 204
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 535 RIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
R+ + L+Y+H G H L +I + ES KI FGL
Sbjct: 120 RLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGL 162
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 85/230 (36%), Gaps = 45/230 (19%)
Query: 403 IAATSHFGKESLLAEGRCGPVYRA--VLPGELHVAIKV-LDNAKGIDHDDAVAMFDELSR 459
+ + +F K + EG G VY+A L GE+ K+ LD A+ L
Sbjct: 1 LGSMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKE 60
Query: 460 LKHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAG 519
L HPN++ L I + KL L+ + DL ++ D S T P
Sbjct: 61 LNHPNIVKLLD-VIHTENKLYLVFEFLSMDLKDFM-----------DASALTGIPLPLIK 108
Query: 520 SHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL-R 578
S++ + +GLA+ H H L ++L+ K+A FGL R
Sbjct: 109 SYL---------------FQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 153
Query: 579 NIGVKNVGERSENETC---GPE-----------SDVYCFGVILMELLTGK 614
GV E T PE D++ G I E++T +
Sbjct: 154 AFGVPVRTYXHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 203
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 415 LAEGRCGPVYRAV--LPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYC 472
L +G G VY+A G L A KV++ + +D + + L+ HP ++ L G
Sbjct: 27 LGDGAFGKVYKAKNKETGAL-AAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAY 85
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTG--EPNVE 505
+ +++EF G + + EL G EP ++
Sbjct: 86 YHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQ 120
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query: 544 LAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGLR-NIGVKNVGERSENE---------- 592
LA+LH G H + ++I L K+ FGL +G GE E +
Sbjct: 170 LAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQ 229
Query: 593 -TCGPESDVYCFGVILMEL 610
+ G +DV+ G+ ++E+
Sbjct: 230 GSYGTAADVFSLGLTILEV 248
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 535 RIAIGVARGLAYLHHVGSTHGHLVTSSILLAESLEPKIAGFGL 577
R+ + L+Y+H G H L +I + ES KI FGL
Sbjct: 120 RLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGL 162
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 415 LAEGRCGPVYRAV--LPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYC 472
L +G G VY+A G L A KV++ + +D + + L+ HP ++ L G
Sbjct: 19 LGDGAFGKVYKAKNKETGAL-AAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAY 77
Query: 473 IAGKEKLVLLEFMANGDLHRWLHELPTG--EPNVE 505
+ +++EF G + + EL G EP ++
Sbjct: 78 YHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQ 112
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 97/252 (38%), Gaps = 67/252 (26%)
Query: 385 AVIMCSKPLVNYLTFKDLIAATSHFGKESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKG 444
A I C++ Y F++L GK + RC VL G+ + A+ + N K
Sbjct: 2 ATITCTRFTEEYQLFEEL-------GKGAFSVVRRC----VKVLAGQEYAAMII--NTKK 48
Query: 445 IDHDDAVAMFDE--LSRL-KHPNLLPLAGYCIAGKEKLVLLEFMANGDLHRWLHELPTGE 501
+ D + E + RL KHPN++ L + ++ H + +L TG
Sbjct: 49 LSARDHQKLEREARICRLLKHPNIVRLH-------------DSISEEGHHYLIFDLVTGG 95
Query: 502 PNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSS 561
ED A + S + ++ + + + + + H +G H +L +
Sbjct: 96 ELFEDIV---------AREYYSEADASHCIQQ------ILEAVLHCHQMGVVHRNLKPEN 140
Query: 562 ILLAESLE---PKIAGFGLRNIGVKNVGERS-----------------ENETCGPESDVY 601
+LLA L+ K+A FGL ++ GE+ + G D++
Sbjct: 141 LLLASKLKGAAVKLADFGL---AIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLW 197
Query: 602 CFGVILMELLTG 613
GVIL LL G
Sbjct: 198 ACGVILYILLVG 209
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 75/196 (38%), Gaps = 40/196 (20%)
Query: 392 PLVNYLTFKDLIAATSHFGKESLLAEGRCGPVY--RAVLPGELHVAIKVLDNAKGIDHD- 448
P V L FKD F + G G VY R V E+ VAIK + + ++
Sbjct: 2 PDVAELFFKD--DPEKLFSDLREIGHGSFGAVYFARDVRNSEV-VAIKKMSYSGKQSNEK 58
Query: 449 --DAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFM--ANGDLHRWLHELPTGEPNV 504
D + L +L+HPN + G + +++E+ + DL +H+ P E +
Sbjct: 59 WQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLE-VHKKPLQEVEI 117
Query: 505 EDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILL 564
A +H G +GLAYLH H + +ILL
Sbjct: 118 ------------AAVTH-----------------GALQGLAYLHSHNMIHRDVKAGNILL 148
Query: 565 AESLEPKIAGFGLRNI 580
+E K+ FG +I
Sbjct: 149 SEPGLVKLGDFGSASI 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,229,067
Number of Sequences: 62578
Number of extensions: 905276
Number of successful extensions: 3976
Number of sequences better than 100.0: 712
Number of HSP's better than 100.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 2488
Number of HSP's gapped (non-prelim): 1165
length of query: 690
length of database: 14,973,337
effective HSP length: 106
effective length of query: 584
effective length of database: 8,340,069
effective search space: 4870600296
effective search space used: 4870600296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)