Query 005572
Match_columns 690
No_of_seqs 402 out of 4328
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 18:28:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005572.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2079-2083//hhsearch_pdb/005572hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 384.0 19.9 257 407-687 41-321 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 380.3 17.2 253 407-685 13-289 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 377.6 20.9 255 408-685 27-306 (308)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 375.3 18.1 249 402-687 31-302 (307)
5 4ase_A Vascular endothelial gr 1.0 1 1 369.5 14.7 266 397-685 54-347 (353)
6 3hmm_A TGF-beta receptor type- 1.0 1 1 362.4 14.5 244 408-689 4-301 (303)
7 4fie_A Serine/threonine-protei 1.0 1 1 359.1 20.0 239 407-683 151-407 (423)
8 4fih_A Serine/threonine-protei 1.0 1 1 358.3 19.1 238 407-682 74-329 (346)
9 4b9d_A Serine/threonine-protei 1.0 1 1 355.9 19.2 234 407-678 24-276 (350)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 351.1 15.5 234 407-683 58-314 (336)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=383.95 Aligned_cols=257 Identities=25% Similarity=0.335 Sum_probs=202.5
Q ss_pred CCCCCCCEECCCCCCCEEEEECC------CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEE
Q ss_conf 06798760045797228999839------993799999304689997899999999872589981012128963981489
Q 005572 407 SHFGKESLLAEGRCGPVYRAVLP------GELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLV 480 (690)
Q Consensus 407 ~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~l 480 (690)
++|...+.||+|+||.||+|+++ ++..||||+++.......++|.+|+++|++++|||||+++|+|.+.+..++
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 99288779714778489989987866577896999999775797999999999999985899899969899998998999
Q ss_pred EEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99715899776653008999999777888877899999977789998997899999999998887643069888787778
Q 005572 481 LLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTS 560 (690)
Q Consensus 481 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~~~H~dlk~~ 560 (690)
|||||++|+|.++++......... ..........++|.+++.|+.|||.||+|||+.+++||||||+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~ 187 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLL-------------AGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATR 187 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGG
T ss_pred EEECCCCCCHHHHHHHCCCCCCCC-------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCHH
T ss_conf 998279993999998607541001-------------2211245788999999999999999999984088422666676
Q ss_pred CEEECCCCCCEECCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCHH-H
Q ss_conf 47855999926747776554345----------------66765688899987753236899999984-899997348-9
Q 005572 561 SILLAESLEPKIAGFGLRNIGVK----------------NVGERSENETCGPESDVYCFGVILMELLT-GKRGTDDCV-K 622 (690)
Q Consensus 561 Nill~~~~~~ki~dfGl~~~~~~----------------~~~e~~~~~~~~~~~DVwSfGvil~el~t-g~~p~~~~~-~ 622 (690)
|||+++++.+||+|||+++.... .+||......++.++|||||||++|||+| |+.||.+.. .
T Consensus 188 NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~ 267 (329)
T 4aoj_A 188 NCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT 267 (329)
T ss_dssp GEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH
T ss_pred HEEECCCCCEEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 48988999689766603336567875300476455656658265447999966300105789999982899999998999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999993689975430111699998999999999983301899999999999999972128999
Q 005572 623 WVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSA 687 (690)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~dP~~RPs~~~i~~~L~~i~~~~ 687 (690)
.....+..+.. +..+..++ . .+.+++.+||+.||++||||.||++.|+.+.+.+
T Consensus 268 ~~~~~i~~g~~-----~~~p~~~~---~---~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 268 EAIDCITQGRE-----LERPRACP---P---EVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp HHHHHHHHTCC-----CCCCTTCC---H---HHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCC-----CCCCCCCC---H---HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 99999980898-----99864463---9---9999999974759657929999999999874588
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=380.28 Aligned_cols=253 Identities=24% Similarity=0.321 Sum_probs=198.9
Q ss_pred CCCCCCCEECCCCCCCEEEEECC------CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEE
Q ss_conf 06798760045797228999839------993799999304689997899999999872589981012128963981489
Q 005572 407 SHFGKESLLAEGRCGPVYRAVLP------GELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLV 480 (690)
Q Consensus 407 ~~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~l 480 (690)
++|...+.||+|+||.||+|++. ++..||||+++.......++|.+|+++|++++|||||+++|+|.+.+..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99715899776653008999999777888877899999977789998997899999999998887643069888787778
Q 005572 481 LLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTS 560 (690)
Q Consensus 481 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~~~H~dlk~~ 560 (690)
|||||++|+|.++|+........ .........++|.+++.++.|||.||.|||+++++||||||+
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~---------------~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~ 157 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVL---------------MAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATR 157 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHH---------------C----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGG
T ss_pred EEECCCCCCHHHHHHHCCCCCCC---------------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 99858999689999860864211---------------123577788999999999999999999997599046765776
Q ss_pred CEEECCCCCCEECCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCHH-H
Q ss_conf 47855999926747776554345----------------66765688899987753236899999984-899997348-9
Q 005572 561 SILLAESLEPKIAGFGLRNIGVK----------------NVGERSENETCGPESDVYCFGVILMELLT-GKRGTDDCV-K 622 (690)
Q Consensus 561 Nill~~~~~~ki~dfGl~~~~~~----------------~~~e~~~~~~~~~~~DVwSfGvil~el~t-g~~p~~~~~-~ 622 (690)
|||+++++.+||+|||+++.... .+||......++.++|||||||++|||+| |+.||.+.. .
T Consensus 158 NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~ 237 (299)
T 4asz_A 158 NCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN 237 (299)
T ss_dssp GEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH
T ss_pred HEEECCCCCEEECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 38987998689887300100678874166475134701038898707999703667788999999980899999998999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 999999936899754301116999989999999999833018999999999999999721289
Q 005572 623 WVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRP 685 (690)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~dP~~RPs~~~i~~~L~~i~~ 685 (690)
.+...+..+... ..+..++ . .+.+++..||+.||++||||.+|++.|+++..
T Consensus 238 ~~~~~i~~~~~~-----~~p~~~~---~---~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~ 289 (299)
T 4asz_A 238 EVIECITQGRVL-----QRPRTCP---Q---EVYELMLGCWQREPHMRKNIKGIHTLLQNLAK 289 (299)
T ss_dssp HHHHHHHHTCCC-----CCCTTCC---H---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCC-----CCCCCCH---H---HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 999999808988-----9974143---9---99999999768796689299999999987776
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=377.61 Aligned_cols=255 Identities=20% Similarity=0.244 Sum_probs=197.1
Q ss_pred CCCCCCEECCCCCCCEEEEECC------CCCEEEEEEEECCC-CCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEE
Q ss_conf 6798760045797228999839------99379999930468-9997899999999872589981012128963981489
Q 005572 408 HFGKESLLAEGRCGPVYRAVLP------GELHVAIKVLDNAK-GIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLV 480 (690)
Q Consensus 408 ~~~~~~~ig~G~~g~V~~~~~~------~~~~vavK~~~~~~-~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~l 480 (690)
++...+.||+|+||.||+|++. ++..||||+++... ....++|.+|+.++++++|||||+++|+|.+.+..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99715899776653008999999777888877899999977789998997899999999998887643069888787778
Q 005572 481 LLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTS 560 (690)
Q Consensus 481 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~~~H~dlk~~ 560 (690)
|||||++|+|.++|+.......... ..........++|.+++.|+.|||.||+|||+++++||||||+
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~ 174 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGS------------TDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATR 174 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----------------CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGG
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCC------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 9981899949999986276543333------------2211112468999999999999999999998689977873623
Q ss_pred CEEECCCCCCEECCCCCCCCCCC----------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCCHH-H
Q ss_conf 47855999926747776554345----------------66765688899987753236899999984-899997348-9
Q 005572 561 SILLAESLEPKIAGFGLRNIGVK----------------NVGERSENETCGPESDVYCFGVILMELLT-GKRGTDDCV-K 622 (690)
Q Consensus 561 Nill~~~~~~ki~dfGl~~~~~~----------------~~~e~~~~~~~~~~~DVwSfGvil~el~t-g~~p~~~~~-~ 622 (690)
|||+++++.+||+|||+++.... .+||......++.++|||||||++|||+| |..||.+.. .
T Consensus 175 NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~ 254 (308)
T 4gt4_A 175 NVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ 254 (308)
T ss_dssp GEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH
T ss_pred CEEECCCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 06887999789887602023367774047345125776569899827999963000157999999996899999998999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 999999936899754301116999989999999999833018999999999999999721289
Q 005572 623 WVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRP 685 (690)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~dP~~RPs~~~i~~~L~~i~~ 685 (690)
.+...+..+... ..+..++ ..+.+++..||+.||++||||.||++.|+....
T Consensus 255 ~~~~~i~~~~~~-----~~p~~~~------~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~n 306 (308)
T 4gt4_A 255 DVVEMIRNRQVL-----PCPDDCP------AWVYALMIECWNEFPSRRPRFKDIHSRLRAWGN 306 (308)
T ss_dssp HHHHHHHTTCCC-----CCCTTCC------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCC
T ss_pred HHHHHHHCCCCC-----CCCCCCH------HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCC
T ss_conf 999999819989-----9962036------999999999758796579299999999985318
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=375.26 Aligned_cols=249 Identities=24% Similarity=0.323 Sum_probs=194.4
Q ss_pred HHHHHCCCCCCCEECCCCCCCEEEEECCCCCEEEEEEEECCCCC--CHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEE
Q ss_conf 99995067987600457972289998399937999993046899--9789999999987258998101212896398148
Q 005572 402 LIAATSHFGKESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGI--DHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKL 479 (690)
Q Consensus 402 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~ 479 (690)
|++..+++...+.||+|+||.||+|++.+ .||||+++..... ..+.|.+|++++++++|||||+++|+|.+ +..+
T Consensus 31 Wei~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~ 107 (307)
T 3omv_A 31 WEIEASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLA 107 (307)
T ss_dssp CBCCTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCE
T ss_pred CEECHHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEE
T ss_conf 08747994984498208886899999899--68999997268999999999999999985899887469999978-9589
Q ss_pred EEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99971589977665300899999977788887789999997778999899789999999999888764306988878777
Q 005572 480 VLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVT 559 (690)
Q Consensus 480 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~~~H~dlk~ 559 (690)
+|||||++|+|.++|+.. ...++|.+++.|+.|||.||+|||+++|+||||||
T Consensus 108 iVmEy~~gGsL~~~l~~~---------------------------~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp 160 (307)
T 3omv_A 108 IVTQWCEGSSLYKHLHVQ---------------------------ETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKS 160 (307)
T ss_dssp EEEECCSSCBHHHHHHTS---------------------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCS
T ss_pred EEEECCCCCCHHHHHHHC---------------------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 999748998788987524---------------------------89999999999999999999999779952785578
Q ss_pred CCEEECCCCCCEECCCCCCCCCCCC----------------CCCCCC---CCCCCCCCCCHHHHHHHHHHHHCCCCCCCH
Q ss_conf 8478559999267477765543456----------------676568---889998775323689999998489999734
Q 005572 560 SSILLAESLEPKIAGFGLRNIGVKN----------------VGERSE---NETCGPESDVYCFGVILMELLTGKRGTDDC 620 (690)
Q Consensus 560 ~Nill~~~~~~ki~dfGl~~~~~~~----------------~~e~~~---~~~~~~~~DVwSfGvil~el~tg~~p~~~~ 620 (690)
+|||+++++.+||+|||+|+..... +||... ...++.++|||||||++|||+||+.||.+.
T Consensus 161 ~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~ 240 (307)
T 3omv_A 161 NNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHI 240 (307)
T ss_dssp SSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred HHEEECCCCCEEEEECCCCEECCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99788899908994415754246677640315644687724987861468998786877572899999999788998999
Q ss_pred --HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf --8999999993689975430111699998999999999983301899999999999999972128999
Q 005572 621 --VKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRPSA 687 (690)
Q Consensus 621 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~dP~~RPs~~~i~~~L~~i~~~~ 687 (690)
..........+.... ..+.....+ .. .+.+++.+||+.||++||||.+|++.|+.+++.+
T Consensus 241 ~~~~~~~~~~~~~~~~p-~~~~~~~~~---~~---~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l 302 (307)
T 3omv_A 241 NNRDQIIFMVGRGYASP-DLSKLYKNC---PK---AMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp CCHHHHHHHHHTTCCCC-CSTTSCTTS---CH---HHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCCCCCC-CCCCCCCCC---HH---HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCC
T ss_conf 96999999996588888-720035445---69---9999999975779768909899999999974507
No 5
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=369.53 Aligned_cols=266 Identities=23% Similarity=0.273 Sum_probs=204.1
Q ss_pred CCHHHHHHHHCCCCCCCEECCCCCCCEEEEECCC------CCEEEEEEEECCCC-CCHHHHHHHHHHHHHCCC-CCCCCE
Q ss_conf 4988899995067987600457972289998399------93799999304689-997899999999872589-981012
Q 005572 397 LTFKDLIAATSHFGKESLLAEGRCGPVYRAVLPG------ELHVAIKVLDNAKG-IDHDDAVAMFDELSRLKH-PNLLPL 468 (690)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~------~~~vavK~~~~~~~-~~~~~~~~e~~~l~~l~H-~niv~l 468 (690)
....+|++..++|...+.||+|+||.||+|.+.+ ...||||++..... ...+.+.+|+++|.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEECC-CEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1289639-814899971589977665300899999977788887789999997778999899789999999999888764
Q 005572 469 AGYCIAG-KEKLVLLEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYL 547 (690)
Q Consensus 469 ~g~~~~~-~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~~l~yL 547 (690)
+|+|.+. +..++|||||++|+|.++|+.......... ..........++|.+++.++.|||.||+||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~qia~gl~yL 201 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYK------------VAPEDLYKDFLTLEHLICYSFQVAKGMEFL 201 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------------------CTTCBCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCC------------CCCHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 89999469779999983898979999974356665433------------341011035689999999999999998767
Q ss_pred HHCCCCCCCCCCCCEEECCCCCCEECCCCCCCCCCCC----------------CCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 3069888787778478559999267477765543456----------------676568889998775323689999998
Q 005572 548 HHVGSTHGHLVTSSILLAESLEPKIAGFGLRNIGVKN----------------VGERSENETCGPESDVYCFGVILMELL 611 (690)
Q Consensus 548 H~~~~~H~dlk~~Nill~~~~~~ki~dfGl~~~~~~~----------------~~e~~~~~~~~~~~DVwSfGvil~el~ 611 (690)
|+++++||||||+|||+++++.+||+|||+|+..... +||...+..++.++|||||||++|||+
T Consensus 202 H~~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~ 281 (353)
T 4ase_A 202 ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIF 281 (353)
T ss_dssp HHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHT
T ss_pred HHCCEECCCCCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHH
T ss_conf 62784357467211305799978979654322245688720325401466656989994699997553740689999998
Q ss_pred H-CCCCCCCH--HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 4-89999734--89999999936899754301116999989999999999833018999999999999999721289
Q 005572 612 T-GKRGTDDC--VKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDIRP 685 (690)
Q Consensus 612 t-g~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~dP~~RPs~~~i~~~L~~i~~ 685 (690)
| |+.||.+. .+.....+..+... ..+..+ . . .+.+++..||+.||++||||.+|++.|+.+.+
T Consensus 282 t~G~~Pf~~~~~~~~~~~~i~~g~~~-----~~p~~~--~-~---~~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 282 SLGASPYPGVKIDEEFCRRLKEGTRM-----RAPDYT--T-P---EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp TTSCCSSTTCCCSHHHHHHHHHTCCC-----CCCTTC--C-H---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCHHHHHHHHHHCCCCC-----CCCCCC--C-H---HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 18999999989899999999738988-----888657--8-9---99999999768696679399999999999998
No 6
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=362.38 Aligned_cols=244 Identities=19% Similarity=0.217 Sum_probs=184.9
Q ss_pred CCCCCCEECCCCCCCEEEEECCCCCEEEEEEEECCCCCCHHHHH--HHHHHHHHCCCCCCCCEEEEEECCC----EEEEE
Q ss_conf 67987600457972289998399937999993046899978999--9999987258998101212896398----14899
Q 005572 408 HFGKESLLAEGRCGPVYRAVLPGELHVAIKVLDNAKGIDHDDAV--AMFDELSRLKHPNLLPLAGYCIAGK----EKLVL 481 (690)
Q Consensus 408 ~~~~~~~ig~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~--~e~~~l~~l~H~niv~l~g~~~~~~----~~~lv 481 (690)
++...+.||+|+||.||+|++. +..||||+++... .+.+. .|+..+.+++|||||+++|+|.+.+ ..++|
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~---~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV 79 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLV 79 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred EEEEEEEEEECCCEEEEEEEEC-CEEEEEEEECCCC---HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEE
T ss_conf 8999789840899399999999-9899999988313---36699999999986089998870999998468872378877
Q ss_pred EEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC--------CCC
Q ss_conf 971589977665300899999977788887789999997778999899789999999999888764306--------988
Q 005572 482 LEFMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHV--------GST 553 (690)
Q Consensus 482 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~~l~yLH~~--------~~~ 553 (690)
||||++|+|.++++. ..++|..+.+++.|+|.||+|||+. +++
T Consensus 80 ~Ey~~~gsL~~~l~~-----------------------------~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~Ii 130 (303)
T 3hmm_A 80 SDYHEHGSLFDYLNR-----------------------------YTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIA 130 (303)
T ss_dssp EECCTTCBHHHHHHH-----------------------------CCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEE
T ss_pred ECCCCCCCHHHHHHH-----------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 517899968999975-----------------------------799989999999999999999998524004789876
Q ss_pred CCCCCCCCEEECCCCCCEECCCCCCCCCCCC------------------CCCCCCCC------CCCCCCCCHHHHHHHHH
Q ss_conf 8787778478559999267477765543456------------------67656888------99987753236899999
Q 005572 554 HGHLVTSSILLAESLEPKIAGFGLRNIGVKN------------------VGERSENE------TCGPESDVYCFGVILME 609 (690)
Q Consensus 554 H~dlk~~Nill~~~~~~ki~dfGl~~~~~~~------------------~~e~~~~~------~~~~~~DVwSfGvil~e 609 (690)
||||||+|||++.++.+||+|||+++..... +||...+. .+++++|||||||++||
T Consensus 131 HRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~E 210 (303)
T 3hmm_A 131 HRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWE 210 (303)
T ss_dssp CSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 24678420899889978998479874556777732210464246646269888456545567765706766647999999
Q ss_pred HHHCCCCCCC----------H------HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf 9848999973----------4------89999999936899754301116999989999999999833018999999999
Q 005572 610 LLTGKRGTDD----------C------VKWVRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTM 673 (690)
Q Consensus 610 l~tg~~p~~~----------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~dP~~RPs~ 673 (690)
|+||..|+.. . .+....... .+..++.++.... .......+.+++.+||+.||++||||
T Consensus 211 l~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~rp~~p~~~~-~~~~~~~l~~li~~cl~~dP~~RPt~ 285 (303)
T 3hmm_A 211 IARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVC----EQKLRPNIPNRWQ-SCEALRVMAKIMRECWYANGAARLTA 285 (303)
T ss_dssp HHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHT----TSCCCCCCCGGGG-SSHHHHHHHHHHHTTCCSSGGGSCCH
T ss_pred HHHCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHH----CCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCHHHCCCH
T ss_conf 987899877665223531002545430999999875----0257998876556-65899999999999760597579599
Q ss_pred HHHHHHHHCCCCCCCC
Q ss_conf 9999997212899999
Q 005572 674 QQVLGLLKDIRPSADL 689 (690)
Q Consensus 674 ~~i~~~L~~i~~~~~~ 689 (690)
.+|++.|+.+.+..++
T Consensus 286 ~ei~~~L~~l~~~~~i 301 (303)
T 3hmm_A 286 LRIKKTLSQLSQQEGI 301 (303)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999988987599
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=359.15 Aligned_cols=239 Identities=21% Similarity=0.266 Sum_probs=194.3
Q ss_pred CCCCCCCEECCCCCCCEEEEE-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEEC
Q ss_conf 067987600457972289998-3999379999930468999789999999987258998101212896398148999715
Q 005572 407 SHFGKESLLAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFM 485 (690)
Q Consensus 407 ~~~~~~~~ig~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~ 485 (690)
+.|+..+.||+|+||.||+|+ ..++..||||+++..+....+.+.+|+++|+.++|||||++++++.+.+..|||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 84386169624818489999999999899999986255468999999999998579989871689999899999999698
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEC
Q ss_conf 89977665300899999977788887789999997778999899789999999999888764306988878777847855
Q 005572 486 ANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLA 565 (690)
Q Consensus 486 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~~~H~dlk~~Nill~ 565 (690)
++|+|.++++. ..+++.++..++.|++.||.|||+++|+||||||+|||++
T Consensus 231 ~gG~L~~~i~~-----------------------------~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~ 281 (423)
T 4fie_A 231 EGGALTDIVTH-----------------------------TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLT 281 (423)
T ss_dssp TTEEHHHHHHH-----------------------------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEEC
T ss_pred CCCCHHHHHHC-----------------------------CCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEC
T ss_conf 99828988761-----------------------------6989999999999999999999988904465787778985
Q ss_pred CCCCCEECCCCCCCCCCCC--------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHH
Q ss_conf 9999267477765543456--------------67656888999877532368999999848999973489-99999993
Q 005572 566 ESLEPKIAGFGLRNIGVKN--------------VGERSENETCGPESDVYCFGVILMELLTGKRGTDDCVK-WVRKLVKE 630 (690)
Q Consensus 566 ~~~~~ki~dfGl~~~~~~~--------------~~e~~~~~~~~~~~DVwSfGvil~el~tg~~p~~~~~~-~~~~~~~~ 630 (690)
.++.+||+|||+++..... +||......|+.++||||+||++|||++|+.||.+... .....+..
T Consensus 282 ~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~ 361 (423)
T 4fie_A 282 HDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRD 361 (423)
T ss_dssp TTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
T ss_conf 89998980372654777887643466647472799997799999689999999999999978799898699999999972
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH--HHHCC
Q ss_conf 689975430111699998999999999983301899999999999999--97212
Q 005572 631 GAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLG--LLKDI 683 (690)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~dP~~RPs~~~i~~--~L~~i 683 (690)
..... .......+ . .+.+++.+||+.||++|||+.|+++ ++.+.
T Consensus 362 ~~~~~---~~~~~~~s---~---~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~ 407 (423)
T 4fie_A 362 NLPPR---LKNLHKVS---P---SLKGFLDRLLVRDPAQRATAAELLKHPFLAKA 407 (423)
T ss_dssp SCCCC---CSCTTSSC---H---HHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGC
T ss_pred CCCCC---CCCCCCCC---H---HHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCC
T ss_conf 79988---76501299---9---99999999867895689099999609875689
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=358.34 Aligned_cols=238 Identities=21% Similarity=0.263 Sum_probs=193.4
Q ss_pred CCCCCCCEECCCCCCCEEEEE-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEEC
Q ss_conf 067987600457972289998-3999379999930468999789999999987258998101212896398148999715
Q 005572 407 SHFGKESLLAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFM 485 (690)
Q Consensus 407 ~~~~~~~~ig~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~ 485 (690)
+.|+..+.||+|+||.||+|+ ..++..||||+++..+....+.+.+|+++|+.++|||||++++++.+.+..|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 75387079602728299999998999899999985276568999999999998679989991999999899999999698
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEC
Q ss_conf 89977665300899999977788887789999997778999899789999999999888764306988878777847855
Q 005572 486 ANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLA 565 (690)
Q Consensus 486 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~~~H~dlk~~Nill~ 565 (690)
++|+|.+++.+ ..+++.++..++.|++.||.|||+++|+||||||+|||++
T Consensus 154 ~gg~L~~~l~~-----------------------------~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~ 204 (346)
T 4fih_A 154 EGGALTDIVTH-----------------------------TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLT 204 (346)
T ss_dssp TTEEHHHHHHH-----------------------------SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEC
T ss_pred CCCCHHHHHHC-----------------------------CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEC
T ss_conf 99808999871-----------------------------8989999999999999999999988835562788997887
Q ss_pred CCCCCEECCCCCCCCCCCC--------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHH-HHHHHHHH
Q ss_conf 9999267477765543456--------------67656888999877532368999999848999973489-99999993
Q 005572 566 ESLEPKIAGFGLRNIGVKN--------------VGERSENETCGPESDVYCFGVILMELLTGKRGTDDCVK-WVRKLVKE 630 (690)
Q Consensus 566 ~~~~~ki~dfGl~~~~~~~--------------~~e~~~~~~~~~~~DVwSfGvil~el~tg~~p~~~~~~-~~~~~~~~ 630 (690)
.++.+||+|||+++..... +||......|+.++||||+||++|||++|+.||.+... .....+..
T Consensus 205 ~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~ 284 (346)
T 4fih_A 205 HDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRD 284 (346)
T ss_dssp TTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
T ss_conf 99988990275753667887753465627582799997799999689999999999999978799898599999999971
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH--HHHC
Q ss_conf 689975430111699998999999999983301899999999999999--9721
Q 005572 631 GAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLG--LLKD 682 (690)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~dP~~RPs~~~i~~--~L~~ 682 (690)
...... ......+. .+.+++.+||+.||++|||+.|+++ ++.+
T Consensus 285 ~~~~~~---~~~~~~s~------~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~ 329 (346)
T 4fih_A 285 NLPPRL---KNLHKVSP------SLKGFLDRLLVRDPAQRATAAELLKHPFLAK 329 (346)
T ss_dssp SSCCCC---SCGGGSCH------HHHHHHHHHSCSSTTTSCCHHHHTTCGGGGG
T ss_pred CCCCCC---CCCCCCCH------HHHHHHHHHCCCCHHHCCCHHHHHCCHHHCC
T ss_conf 799988---75022999------9999999986799568909999960986568
No 9
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=355.88 Aligned_cols=234 Identities=17% Similarity=0.237 Sum_probs=191.7
Q ss_pred CCCCCCCEECCCCCCCEEEEE-CCCCCEEEEEEEECCCCC--CHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEE
Q ss_conf 067987600457972289998-399937999993046899--97899999999872589981012128963981489997
Q 005572 407 SHFGKESLLAEGRCGPVYRAV-LPGELHVAIKVLDNAKGI--DHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLE 483 (690)
Q Consensus 407 ~~~~~~~~ig~G~~g~V~~~~-~~~~~~vavK~~~~~~~~--~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e 483 (690)
++|...+.||+|+||.||+|+ ..++..||||++...... ..+.+.+|++++++++|||||++++++.+.+..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred ECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 15899776653008999999777888877899999977789998997899999999998887643069888787778478
Q 005572 484 FMANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSIL 563 (690)
Q Consensus 484 ~~~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~~~H~dlk~~Nil 563 (690)
||++|+|.++++.. ....+++.+...++.|++.||.|||+++|+||||||+|||
T Consensus 104 y~~gg~L~~~i~~~--------------------------~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NIL 157 (350)
T 4b9d_A 104 YCEGGDLFKRINAQ--------------------------KGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIF 157 (350)
T ss_dssp CCTTCBHHHHHHHT--------------------------TTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEE
T ss_pred CCCCCCHHHHHHHC--------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEE
T ss_conf 88998399999973--------------------------8999978999999999999999999899151359789979
Q ss_pred ECCCCCCEECCCCCCCCCCCC--------------CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCH--HHHHHHH
Q ss_conf 559999267477765543456--------------676568889998775323689999998489999734--8999999
Q 005572 564 LAESLEPKIAGFGLRNIGVKN--------------VGERSENETCGPESDVYCFGVILMELLTGKRGTDDC--VKWVRKL 627 (690)
Q Consensus 564 l~~~~~~ki~dfGl~~~~~~~--------------~~e~~~~~~~~~~~DVwSfGvil~el~tg~~p~~~~--~~~~~~~ 627 (690)
++.++.+||+|||+++..... +||...+..++.++||||+||++|||+||+.||... .+....+
T Consensus 158 l~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i 237 (350)
T 4b9d_A 158 LTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKI 237 (350)
T ss_dssp ECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred ECCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 87899989764652144068854101457883603999987999895999999999999999787998996999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 993689975430111699998999999999983301899999999999999
Q 005572 628 VKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLG 678 (690)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~dP~~RPs~~~i~~ 678 (690)
.. +.. +.+....+. .+.+++.+||+.||++|||+.|+++
T Consensus 238 ~~-~~~-----~~~~~~~s~------~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 238 IS-GSF-----PPVSLHYSY------DLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp HH-TCC-----CCCCTTSCH------HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HC-CCC-----CCCCCCCCH------HHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf 80-899-----999755799------9999999985589667908999963
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=351.09 Aligned_cols=234 Identities=15% Similarity=0.167 Sum_probs=187.6
Q ss_pred CCCCCCCEECCCCCCCEEEEE-CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCEEEEEEEEC
Q ss_conf 067987600457972289998-3999379999930468999789999999987258998101212896398148999715
Q 005572 407 SHFGKESLLAEGRCGPVYRAV-LPGELHVAIKVLDNAKGIDHDDAVAMFDELSRLKHPNLLPLAGYCIAGKEKLVLLEFM 485 (690)
Q Consensus 407 ~~~~~~~~ig~G~~g~V~~~~-~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~ 485 (690)
+.|...+.||+|+||.||+|+ ..++..||||+++.... ..+|+.+++.++|||||++++++.+.+..|+|||||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 132 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELL 132 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-----HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEECC
T ss_conf 351768685138780999999889998999999788886-----999999998579989993999999899999999665
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEC
Q ss_conf 89977665300899999977788887789999997778999899789999999999888764306988878777847855
Q 005572 486 ANGDLHRWLHELPTGEPNVEDWSTDTWDHHPGAGSHISSPEKTNWVTRHRIAIGVARGLAYLHHVGSTHGHLVTSSILLA 565 (690)
Q Consensus 486 ~~gsL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ia~~l~yLH~~~~~H~dlk~~Nill~ 565 (690)
++|+|.+++++ ...+++.....++.|++.||+|||+++|+||||||+|||++
T Consensus 133 ~gg~L~~~l~~----------------------------~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~ 184 (336)
T 4g3f_A 133 EGGSLGQLIKQ----------------------------MGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLS 184 (336)
T ss_dssp TTCBHHHHHHH----------------------------HSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEEC
T ss_pred CCCCHHHHHHH----------------------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHEEEE
T ss_conf 99869999987----------------------------69999999999999999999999988904261677887995
Q ss_pred CCC-CCEECCCCCCCCCCC-------------------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHH--HH
Q ss_conf 999-926747776554345-------------------66765688899987753236899999984899997348--99
Q 005572 566 ESL-EPKIAGFGLRNIGVK-------------------NVGERSENETCGPESDVYCFGVILMELLTGKRGTDDCV--KW 623 (690)
Q Consensus 566 ~~~-~~ki~dfGl~~~~~~-------------------~~~e~~~~~~~~~~~DVwSfGvil~el~tg~~p~~~~~--~~ 623 (690)
.++ .+||+|||+++.... .+||...+..++.++|||||||++|||+||+.||.+.. +.
T Consensus 185 ~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~ 264 (336)
T 4g3f_A 185 SDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL 264 (336)
T ss_dssp TTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC
T ss_pred CCCCEEEEEECCCCEECCCCCCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 89997999627877685678765402217854558020089998899989089999999999999978699899899999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 999999368997543011169999899999999998330189999999999999997212
Q 005572 624 VRKLVKEGAGGDALDFRLKLGSGDSVAEMVESLRVGYLCTADSPGKRPTMQQVLGLLKDI 683 (690)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~C~~~dP~~RPs~~~i~~~L~~i 683 (690)
...+.... .....++...+. .+.+++.+||+.||++|||+.|+++.|...
T Consensus 265 ~~~i~~~~----~~~~~~~~~~s~------~~~~li~~~L~~dP~~R~sa~el~~~l~~~ 314 (336)
T 4g3f_A 265 CLKIASEP----PPIREIPPSCAP------LTAQAIQEGLRKEPVHRASAMELRRKVGKA 314 (336)
T ss_dssp HHHHHHSC----CGGGGSCTTSCH------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHCCC----CCCHHCCCCCCH------HHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 99998089----980025866799------999999997628976895999999999999
Done!