Query 005576
Match_columns 690
No_of_seqs 175 out of 1214
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 18:19:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005576.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2084-2087//hhsearch_pdb/005576hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2olm_A Nucleoporin-like protei 1.0 1 1 277.0 11.7 122 3-124 5-128 (140)
2 3jue_A Arfgap with coiled-coil 1.0 1 1 271.6 9.1 125 1-125 23-151 (368)
3 3lju_X ARF-GAP with dual PH do 1.0 1 1 266.6 12.0 123 2-125 13-138 (386)
4 2crr_A Stromal membrane-associ 1.0 1 1 264.8 7.6 121 3-126 9-132 (141)
5 2iqj_A Stromal membrane-associ 1.0 1 1 264.8 7.7 120 3-125 7-129 (134)
6 3lvq_E ARF-GAP with SH3 domain 1.0 1 1 237.1 8.7 123 3-125 3-129 (497)
7 2owa_A Arfgap-like finger doma 1.0 1 1 226.8 9.2 112 6-121 19-133 (138)
8 2b0o_E UPLC1; arfgap, structur 1.0 1 1 223.1 11.9 121 4-124 23-147 (301)
9 2crw_A ARF GAP 3, ADP-ribosyla 1.0 1 1 222.7 6.4 93 1-94 8-104 (149)
10 3dwd_A ADP-ribosylation factor 1.0 1 1 220.4 9.2 116 5-124 20-146 (147)
No 1
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=1.00 E-value=1 Score=276.98 Aligned_cols=122 Identities=40% Similarity=0.758 Sum_probs=115.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6357899999999976599998776889999990580201403132344330499--62222004888989999998129
Q 005576 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT--HRVKSVSMSKFTSQEVEALQNGG 80 (690)
Q Consensus 3 srke~ErnekiLr~Llk~pgNk~CADCGa~~PtWaSinfGVFICi~CSGIHR~LG--hrVKSIsLDkWs~eEV~~Lq~gG 80 (690)
+|+++|+++++|++|++.|+|+.|||||+++|+|||+|||||||++|+||||+|| ++||||+||+|+.++|++|+.+|
T Consensus 5 ~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~s~VrSl~ld~w~~~~l~~m~~~G 84 (140)
T 2olm_A 5 KRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPPHRVKSISMTTFTQQEIEFLQKHG 84 (140)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSCCCEEETTTCCCCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCEEECHHCCCHHCCCCCCCEEEECCCCCCCHHHHHHHHHHC
T ss_conf 67788999999999862847790888989999951504587872206310205888630431677889999999999804
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 28999998402853368899997169999999999850122489
Q 005576 81 NQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGG 124 (690)
Q Consensus 81 N~~ANeiyea~~d~~~~~~P~~sd~~~~reFIraKYveKrf~~~ 124 (690)
|.++|++||+++++...++|+..+.+.+++||++||++|+|+..
T Consensus 85 N~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~ 128 (140)
T 2olm_A 85 NEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVP 128 (140)
T ss_dssp HHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCC
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf 49999999861772237799998899999999999849855077
No 2
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=1.00 E-value=1 Score=271.57 Aligned_cols=125 Identities=20% Similarity=0.442 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHH
Q ss_conf 986357899999999976599998776889999990580201403132344330499---62222004888989999998
Q 005576 1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQ 77 (690)
Q Consensus 1 M~srke~ErnekiLr~Llk~pgNk~CADCGa~~PtWaSinfGVFICi~CSGIHR~LG---hrVKSIsLDkWs~eEV~~Lq 77 (690)
|+.+|++|+++++|+.|++.|+|+.|||||+++|+|||+|||||||++|+||||+|| +|||||+||+|+.++|++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~ 102 (368)
T 3jue_A 23 MARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMC 102 (368)
T ss_dssp ---------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEECHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 53100245799999999739891948879877998689507967727677998646987674677420536689999999
Q ss_pred HCCCHHHHHHHHHCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 1292899999840285336889999-71699999999998501224899
Q 005576 78 NGGNQRAREIYLKDWDFQRQRLPDN-SNVNKVRDFIKNVYVDRRYAGGK 125 (690)
Q Consensus 78 ~gGN~~ANeiyea~~d~~~~~~P~~-sd~~~~reFIraKYveKrf~~~k 125 (690)
.+||.++|++||++|+....++|.. ++.+.+++||++||++|+|+...
T Consensus 103 ~~gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 103 ELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp HSCHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSC
T ss_pred HHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9725999999986434136869899998899999999999863111221
No 3
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=1.00 E-value=1 Score=266.59 Aligned_cols=123 Identities=24% Similarity=0.462 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHCCCC--CEEEECCCCCCHHHHHHHHHC
Q ss_conf 863578999999999765999987768899999905802014031323443304996--222200488898999999812
Q 005576 2 GSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTH--RVKSVSMSKFTSQEVEALQNG 79 (690)
Q Consensus 2 ~srke~ErnekiLr~Llk~pgNk~CADCGa~~PtWaSinfGVFICi~CSGIHR~LGh--rVKSIsLDkWs~eEV~~Lq~g 79 (690)
.+++++|+++++|++|++.|+|+.|||||+++|+|||+|||||||++||||||+|.| +||||+||+|+.++|++|+.+
T Consensus 13 ~~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l~his~v~s~~ld~w~~~~~~~~~~~ 92 (386)
T 3lju_X 13 NLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNIPQVSKVKSVRLDAWEEAQVEFMASH 92 (386)
T ss_dssp SHHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTCTTTCCEEETTTSCCCHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEHHHHCHHHHCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 44555068999999996185899475689789973896160999356135764787444331203657799999999986
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHHHHHHHCCCCCCCC
Q ss_conf 92899999840285336889999716-99999999998501224899
Q 005576 80 GNQRAREIYLKDWDFQRQRLPDNSNV-NKVRDFIKNVYVDRRYAGGK 125 (690)
Q Consensus 80 GN~~ANeiyea~~d~~~~~~P~~sd~-~~~reFIraKYveKrf~~~k 125 (690)
||.++|++||++++.. .++|...+. ..+++||++||++|+|+...
T Consensus 93 gN~~~~~~~e~~~~~~-~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~ 138 (386)
T 3lju_X 93 GNDAARARFESKVPSF-YYRPTPSDCQLLREQWIRAKYERQEFIYPE 138 (386)
T ss_dssp SHHHHHHHHTTTCCTT-SCCCCTTSCHHHHHHHHHHHHTSCTTTSGG
T ss_pred CCHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHEHHHHHCCCEEECCC
T ss_conf 0367899986008866-779797542578888888660797888776
No 4
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=264.84 Aligned_cols=121 Identities=30% Similarity=0.632 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHC
Q ss_conf 6357899999999976599998776889999990580201403132344330499---6222200488898999999812
Q 005576 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNG 79 (690)
Q Consensus 3 srke~ErnekiLr~Llk~pgNk~CADCGa~~PtWaSinfGVFICi~CSGIHR~LG---hrVKSIsLDkWs~eEV~~Lq~g 79 (690)
.++++|+++++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+|| +|||||+||+|+.++|++|+.+
T Consensus 9 ~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~ 88 (141)
T 2crr_A 9 AQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDM 88 (141)
T ss_dssp TTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf 89888999999999970816894887979999848714676773641486716898778155788777899999999997
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 92899999840285336889999716999999999985012248999
Q 005576 80 GNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGKT 126 (690)
Q Consensus 80 GN~~ANeiyea~~d~~~~~~P~~sd~~~~reFIraKYveKrf~~~k~ 126 (690)
||.++|++||++++.. .+.|.. .+.+++||++||++|+|+....
T Consensus 89 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~~ 132 (141)
T 2crr_A 89 GNTKARLLYEANLPEN-FRRPQT--DQAVEFFIRDKYEKKKYYDKNA 132 (141)
T ss_dssp HHHHHHHHGGGSCCTT-CCCCCS--HHHHHHHHHHHHTSCTTCCCGG
T ss_pred CCHHHHHHHHHCCCCC-CCCCCC--HHHHHHHHHHHHHCCCCCCCCC
T ss_conf 4299999888508854-679996--0899999999994480628885
No 5
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=264.81 Aligned_cols=120 Identities=30% Similarity=0.600 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHC
Q ss_conf 6357899999999976599998776889999990580201403132344330499---6222200488898999999812
Q 005576 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNG 79 (690)
Q Consensus 3 srke~ErnekiLr~Llk~pgNk~CADCGa~~PtWaSinfGVFICi~CSGIHR~LG---hrVKSIsLDkWs~eEV~~Lq~g 79 (690)
++++.|+++++|+.|++.|+|+.|||||+++|+|||+|||||||++||||||+|| ++||||+||+|+.++|++|+.+
T Consensus 7 ~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~ 86 (134)
T 2iqj_A 7 SVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEM 86 (134)
T ss_dssp ------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHH
T ss_conf 27579999999999973857790776969999858814787870766698861798778400166567899999999997
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9289999984028533688999971699999999998501224899
Q 005576 80 GNQRAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRYAGGK 125 (690)
Q Consensus 80 GN~~ANeiyea~~d~~~~~~P~~sd~~~~reFIraKYveKrf~~~k 125 (690)
||.++|++||++++.. .+.|.. .+.+++||++||++|+|+...
T Consensus 87 GN~~an~~~e~~lp~~-~~~P~~--~~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 87 GNGKANRLYEAYLPET-FRRPQI--DPAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp HHHHHHHHHTTTCCSS-CCCCCS--HHHHHHHHHHHHTSCTTCCTT
T ss_pred CHHHHHHHHHHCCCCC-CCCCCC--HHHHHHHHHHHHHCCEEECCC
T ss_conf 4199999988618965-789894--589999999998378632776
No 6
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=1.00 E-value=1 Score=237.12 Aligned_cols=123 Identities=25% Similarity=0.491 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHC
Q ss_conf 6357899999999976599998776889999990580201403132344330499---6222200488898999999812
Q 005576 3 SRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNG 79 (690)
Q Consensus 3 srke~ErnekiLr~Llk~pgNk~CADCGa~~PtWaSinfGVFICi~CSGIHR~LG---hrVKSIsLDkWs~eEV~~Lq~g 79 (690)
.++.+|.++++++.|++.|+|+.|||||+++|+|+|+|+|||||++||||||+|| +||||++||.|+.+++.+|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~ 82 (497)
T 3lvq_E 3 DGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM 82 (497)
T ss_dssp -----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHH
T ss_conf 51167899999999960889872658898999879844008747866888876456633010344377999999999987
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 92899999840285336889999-71699999999998501224899
Q 005576 80 GNQRAREIYLKDWDFQRQRLPDN-SNVNKVRDFIKNVYVDRRYAGGK 125 (690)
Q Consensus 80 GN~~ANeiyea~~d~~~~~~P~~-sd~~~~reFIraKYveKrf~~~k 125 (690)
||..+|++||+.++....++|.. ++...+++||++||++++|....
T Consensus 83 GN~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 83 GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp CHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 55999999986446256879898676999999998874202233333
No 7
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=1.00 E-value=1 Score=226.77 Aligned_cols=112 Identities=24% Similarity=0.472 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHCCC-C--CEEEECCCCCCHHHHHHHHHCCCH
Q ss_conf 7899999999976599998776889999990580201403132344330499-6--222200488898999999812928
Q 005576 6 EEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSKFTSQEVEALQNGGNQ 82 (690)
Q Consensus 6 e~ErnekiLr~Llk~pgNk~CADCGa~~PtWaSinfGVFICi~CSGIHR~LG-h--rVKSIsLDkWs~eEV~~Lq~gGN~ 82 (690)
.++..+++++.|++.|+|++|||||+++|+|||+|||||||++||||||+|| | |||||+||+|++++|++|+.+||.
T Consensus 19 ~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~ 98 (138)
T 2owa_A 19 SDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNG 98 (138)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHCCH
T ss_conf 98999999999873867880777959999827713787774740588867898878122167676999999999960419
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 999998402853368899997169999999999850122
Q 005576 83 RAREIYLKDWDFQRQRLPDNSNVNKVRDFIKNVYVDRRY 121 (690)
Q Consensus 83 ~ANeiyea~~d~~~~~~P~~sd~~~~reFIraKYveKrf 121 (690)
++|++||+++... |.....++++.|+..||++|.-
T Consensus 99 ~an~~~e~~~~~~----~~~~~~~kY~s~~a~~Y~~kL~ 133 (138)
T 2owa_A 99 RARNYFKQVLGVN----FSPKTKEYASSICGRQYKQILD 133 (138)
T ss_dssp HHHHHHHHHTCTT----CCGGGCHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC----CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999999774989----9988788772299999999999
No 8
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=1.00 E-value=1 Score=223.14 Aligned_cols=121 Identities=26% Similarity=0.509 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 357899999999976599998776889999990580201403132344330499---62222004888989999998129
Q 005576 4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGG 80 (690)
Q Consensus 4 rke~ErnekiLr~Llk~pgNk~CADCGa~~PtWaSinfGVFICi~CSGIHR~LG---hrVKSIsLDkWs~eEV~~Lq~gG 80 (690)
...++.++++|+.|++.|+|+.|||||+++|+|+|+|||||||++||||||+|| ++|||++||.|+.+++.+|+.+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~G 102 (301)
T 2b0o_E 23 GEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMG 102 (301)
T ss_dssp ----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEECHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 89899999999998638798969999999998687105847858778988752887562035675789999999999738
Q ss_pred CHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 289999984028533688999-97169999999999850122489
Q 005576 81 NQRAREIYLKDWDFQRQRLPD-NSNVNKVRDFIKNVYVDRRYAGG 124 (690)
Q Consensus 81 N~~ANeiyea~~d~~~~~~P~-~sd~~~~reFIraKYveKrf~~~ 124 (690)
|.++|++||+.++......|. .++...+++||++||++++|...
T Consensus 103 N~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 103 NTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 888999999864114677889764378899999999873311023
No 9
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=222.69 Aligned_cols=93 Identities=25% Similarity=0.572 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHCCC-C--CEEEECCCC-CCHHHHHHH
Q ss_conf 986357899999999976599998776889999990580201403132344330499-6--222200488-898999999
Q 005576 1 MGSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT-H--RVKSVSMSK-FTSQEVEAL 76 (690)
Q Consensus 1 M~srke~ErnekiLr~Llk~pgNk~CADCGa~~PtWaSinfGVFICi~CSGIHR~LG-h--rVKSIsLDk-Ws~eEV~~L 76 (690)
|.... .++.+++|+.|++.|+|++|||||+++|+|||+|||||||++|+||||+|| | |||||+||. |+.++|+.|
T Consensus 8 m~~~~-k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m 86 (149)
T 2crw_A 8 MGDPS-KQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCM 86 (149)
T ss_dssp SCCCC-HHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHH
T ss_pred CCCCC-HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCEEECHHCCHHHCCCCCCCCEEECCCCCCCCCHHHHHHH
T ss_conf 35578-89999999998618578838879699998277156878824112535168788880012656789999999999
Q ss_pred HHCCCHHHHHHHHHCCCC
Q ss_conf 812928999998402853
Q 005576 77 QNGGNQRAREIYLKDWDF 94 (690)
Q Consensus 77 q~gGN~~ANeiyea~~d~ 94 (690)
+.+||.++|++||+++..
T Consensus 87 ~~~GN~~an~~~e~~~~~ 104 (149)
T 2crw_A 87 QVGGNASASSFFHQHGCS 104 (149)
T ss_dssp HTTCHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 997559999999966999
No 10
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=220.44 Aligned_cols=116 Identities=28% Similarity=0.532 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEEHHHHHHHHCCC---CCEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 57899999999976599998776889999990580201403132344330499---622220048889899999981292
Q 005576 5 KEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFVCMTCSGIHREFT---HRVKSVSMSKFTSQEVEALQNGGN 81 (690)
Q Consensus 5 ke~ErnekiLr~Llk~pgNk~CADCGa~~PtWaSinfGVFICi~CSGIHR~LG---hrVKSIsLDkWs~eEV~~Lq~gGN 81 (690)
..+++++++|+.|++.|+|+.|||||+++|+|||+|||||||++|+||||+|| ++||||+||+|+.++|+.|+.+||
T Consensus 20 m~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN 99 (147)
T 3dwd_A 20 MASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGN 99 (147)
T ss_dssp --CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCH
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEEEHHHHCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 78889999999997486888267789899986883466747675476774379887712025456779999999999755
Q ss_pred HHHHHHHHHCCCCCCCCCCCC-------CC-HHHHHHHHHHHHHCCCCCCC
Q ss_conf 899999840285336889999-------71-69999999999850122489
Q 005576 82 QRAREIYLKDWDFQRQRLPDN-------SN-VNKVRDFIKNVYVDRRYAGG 124 (690)
Q Consensus 82 ~~ANeiyea~~d~~~~~~P~~-------sd-~~~~reFIraKYveKrf~~~ 124 (690)
.++|+|||++.+.. |.. +. ...+|+.|+++++.|.|..+
T Consensus 100 ~~an~~~ea~~~~~----~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~~ 146 (147)
T 3dwd_A 100 AKFREFLESQEDYD----PCWSLQEKYNSRAAALFRDKVVALAEGREWSLE 146 (147)
T ss_dssp HHHHHHHHTSTTCC----TTCCHHHHHTSHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHCCCCC----CCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999578999----998888764889999999999999759957777
Done!