BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005579
(690 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TEF|A Chain A, Crystal Structure Of The Spinach Plastocyanin Mutants
G8dK30CT69C AND K30CT69C- A Study Of The Effect On
Crystal Packing And Thermostability From The
Introduction Of A Novel Disulfide Bond
pdb|1TEF|B Chain B, Crystal Structure Of The Spinach Plastocyanin Mutants
G8dK30CT69C AND K30CT69C- A Study Of The Effect On
Crystal Packing And Thermostability From The
Introduction Of A Novel Disulfide Bond
Length = 99
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 163 EDDQVRMLPAYRKIQEADQERILLLSKAGFPVNRIVKVLELEKGVQPGQLPFIEKDVRNF 222
+D + LP A E I+ + AGFP N + E+ GV ++ E+D+ N
Sbjct: 8 DDGSLAFLPG--DFSVASGEEIVFCNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNA 65
Query: 223 VRTCKKTVQENDALLTEK 240
C K LTEK
Sbjct: 66 PGECYKVT------LTEK 77
>pdb|1TEG|A Chain A, Crystal Structure Of The Spinach Plastocyanin Mutants
G8dK30CT69C And K30cT69C- A Study Of The Effect On
Crystal Packing And Thermostability From The
Introduction Of A Novel Disulfide Bond
pdb|1TEG|B Chain B, Crystal Structure Of The Spinach Plastocyanin Mutants
G8dK30CT69C And K30cT69C- A Study Of The Effect On
Crystal Packing And Thermostability From The
Introduction Of A Novel Disulfide Bond
Length = 99
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 179 ADQERILLLSKAGFPVNRIVKVLELEKGVQPGQLPFIEKDVRNFVRTCKKTVQENDALLT 238
A E I+ + AGFP N + E+ GV ++ E+D+ N C K LT
Sbjct: 22 ASGEEIVFCNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGECYKVT------LT 75
Query: 239 EK 240
EK
Sbjct: 76 EK 77
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 538 LSTQYAT-TEMTNGSYLVRHYKKMDGEYLVIWIPEDEQIHCSCKEFEHSGILCRHSLRVL 596
L T+Y T +GS+LVR + G+Y + + + HC + +G L
Sbjct: 24 LLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNL 83
Query: 597 VVKNYFQLPEKYLLLRWRLENSLVTMEGPNPQSSSDECAQAFHSLAAALLTESMISK 653
V + + L Y + R + + P PQ+++ E + +H+ E M+ +
Sbjct: 84 VFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMR 140
>pdb|3KR9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase
pdb|3KU1|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|E Chain E, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|F Chain F, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|G Chain G, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|H Chain H, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
Length = 225
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 134 KLYLTKEIVDGVTQWYVSQFSNVHNHELLEDDQVRMLPAYRKIQEADQERILLLSKAGFP 193
K + E+V+G Y S NV H L E QVR+ +E DQ ++ ++ G
Sbjct: 40 KSAIAGEVVEGP---YQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGMG-- 94
Query: 194 VNRIVKVLELEKGVQPGQLPFIEK 217
R++ + LE+G+ G+L +E+
Sbjct: 95 -GRLIARI-LEEGL--GKLANVER 114
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 538 LSTQYAT-TEMTNGSYLVRHYKKMDGEYLVIWIPEDEQIHCSCKEFEHSGILCRHSLRVL 596
L T+Y T +GS+LVR + G+Y + + + HC + +G L
Sbjct: 24 LLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNL 83
Query: 597 VVKNYFQLPEKYLLLRWRLENSLVTMEGPNPQSSSDECAQAFHSLAAALLTESMISK 653
V + + L Y + R + + P PQ+++ E + +H+ E M+ +
Sbjct: 84 VFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMR 140
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 226
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 538 LSTQYAT-TEMTNGSYLVRHYKKMDGEYLVIWIPEDEQIHCSCKEFEHSGILCRHSLRVL 596
L T+Y T +GS+LVR + G+Y + + + HC + +G L
Sbjct: 24 LLTEYCIETGAPDGSFLVRESETFVGDYTLSFWRNGKVQHCRIHSRQDAGTPKFFLTDNL 83
Query: 597 VVKNYFQLPEKYLLLRWRLENSLVTMEGPNPQSSSDECAQAFHSLAAALLTESMISK 653
V + + L Y + R + + P PQ+++ E + +H+ E M+ +
Sbjct: 84 VFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQTNAHESKEWYHASLTRAQAEHMLMR 140
>pdb|2KY9|A Chain A, Solution Nmr Structure Of Ydhk C-Terminal Domain From
B.Subtilis, Northeast Structural Genomics Consortium
Target Target Sr518
Length = 132
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 228 KTVQENDALLTEKRENDTLELLEACKNMAERDVDFVYDYT-TDENEKVENIAWSFGDSIR 286
KT+Q D ++ E ++ A + AE+ ++ DYT T EKV+N W D +
Sbjct: 63 KTLQPGDQVILEASHMKGMKGATAEIDSAEKTTVYMVDYTSTTSGEKVKNHKWVTEDELS 122
Query: 287 A 287
A
Sbjct: 123 A 123
>pdb|2L69|A Chain A, Solution Nmr Structure Of De Novo Designed Protein,
P-Loop Ntpase Fold, Northeast Structural Genomics
Consortium Target Or28
Length = 134
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 62 IFKSDDEAFEYYSNFARKNGFSIRKARSTE 91
+F +D+E + + +KNGF +R RS +
Sbjct: 7 VFSTDEETLRKFKDIIKKNGFKVRTVRSPQ 36
>pdb|3IZB|Y Chain Y, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|R Chain R, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|R Chain R, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|CC Chain c, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|CC Chain c, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 67
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 188 SKAGFPVNRIVKVLEL---EKGVQPGQLPFIEKDVRNFVRTCKKTVQENDALLTEKREND 244
+K + +++KVL GV ++ F+E R VR K V+END L+ + E +
Sbjct: 3 NKTPVTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDILVLMESERE 62
Query: 245 TLEL 248
L
Sbjct: 63 ARRL 66
>pdb|1AG6|A Chain A, Plastocyanin From Spinach
Length = 99
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 163 EDDQVRMLPAYRKIQEADQERILLLSKAGFPVNRIVKVLELEKGVQPGQLPFIEKDVRN 221
+D + LP A E I+ + AGFP N + E+ GV ++ E+D+ N
Sbjct: 8 DDGSLAFLPG--DFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLN 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,651,310
Number of Sequences: 62578
Number of extensions: 770531
Number of successful extensions: 1650
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1644
Number of HSP's gapped (non-prelim): 10
length of query: 690
length of database: 14,973,337
effective HSP length: 106
effective length of query: 584
effective length of database: 8,340,069
effective search space: 4870600296
effective search space used: 4870600296
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)