Query 005580
Match_columns 690
No_of_seqs 648 out of 3424
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 01:42:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3.5E-54 7.5E-59 511.3 31.0 481 148-689 370-922 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 6E-54 1.3E-58 509.2 29.0 418 144-608 468-916 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.3E-49 4.9E-54 464.3 23.9 348 148-558 87-440 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 6.3E-50 1.4E-54 479.5 14.9 415 147-612 151-594 (857)
5 PLN03081 pentatricopeptide (PP 100.0 3E-49 6.6E-54 463.2 16.2 346 145-559 155-509 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 4.8E-49 1E-53 471.9 17.9 474 122-674 231-721 (857)
7 PRK11788 tetratricopeptide rep 99.7 1.8E-15 4E-20 165.3 25.9 276 162-502 47-326 (389)
8 PRK11788 tetratricopeptide rep 99.6 6.1E-14 1.3E-18 153.3 23.3 269 159-493 78-354 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.4 2.4E-11 5.2E-16 146.0 29.0 283 192-511 602-891 (899)
10 PF13041 PPR_2: PPR repeat fam 99.4 2.1E-13 4.5E-18 103.0 5.9 49 385-433 1-49 (50)
11 TIGR02917 PEP_TPR_lipo putativ 99.4 5E-11 1.1E-15 143.3 29.1 262 192-486 466-732 (899)
12 PF13041 PPR_2: PPR repeat fam 99.4 5.2E-13 1.1E-17 100.8 6.8 49 189-237 1-49 (50)
13 KOG4422 Uncharacterized conser 99.4 4.4E-11 9.6E-16 123.9 20.4 290 187-501 111-442 (625)
14 KOG4422 Uncharacterized conser 99.2 3.3E-09 7.2E-14 110.2 23.1 231 192-452 208-463 (625)
15 KOG4318 Bicoid mRNA stability 99.1 8.4E-10 1.8E-14 123.4 12.8 254 171-472 11-286 (1088)
16 PRK15174 Vi polysaccharide exp 98.9 3.7E-07 8E-12 106.6 28.8 290 160-486 52-347 (656)
17 PF11977 RNase_Zc3h12a: Zc3h12 98.9 2.4E-10 5.2E-15 108.0 -0.3 82 606-690 4-95 (155)
18 PF12854 PPR_1: PPR repeat 98.8 3E-09 6.6E-14 72.9 4.0 32 382-413 2-33 (34)
19 PRK15174 Vi polysaccharide exp 98.8 1.4E-06 3E-11 101.8 28.3 282 162-486 88-381 (656)
20 PF12854 PPR_1: PPR repeat 98.8 4E-09 8.7E-14 72.3 3.6 32 417-448 2-33 (34)
21 KOG4318 Bicoid mRNA stability 98.7 3.3E-07 7.1E-12 103.2 16.5 243 212-507 11-287 (1088)
22 TIGR00990 3a0801s09 mitochondr 98.7 7.5E-06 1.6E-10 95.4 27.0 254 164-486 308-571 (615)
23 PF13429 TPR_15: Tetratricopep 98.6 2.2E-07 4.8E-12 97.0 11.1 255 162-485 20-276 (280)
24 TIGR02521 type_IV_pilW type IV 98.5 4.2E-05 9.1E-10 75.9 25.4 127 358-486 105-232 (234)
25 PRK10049 pgaA outer membrane p 98.5 5.1E-05 1.1E-09 90.5 29.2 286 162-486 61-388 (765)
26 PRK10747 putative protoheme IX 98.5 1.5E-05 3.3E-10 87.5 22.7 276 163-483 97-387 (398)
27 PF13429 TPR_15: Tetratricopep 98.5 9.2E-07 2E-11 92.4 12.1 251 197-511 14-268 (280)
28 TIGR00990 3a0801s09 mitochondr 98.4 5.4E-05 1.2E-09 88.2 25.9 300 159-486 136-496 (615)
29 PRK11447 cellulose synthase su 98.4 4.8E-05 1E-09 94.9 26.3 294 160-486 361-700 (1157)
30 TIGR00540 hemY_coli hemY prote 98.4 4.8E-05 1E-09 84.0 23.2 283 162-483 96-396 (409)
31 PRK10049 pgaA outer membrane p 98.3 0.00029 6.3E-09 84.1 28.9 290 160-486 93-422 (765)
32 TIGR00756 PPR pentatricopeptid 98.2 1.3E-06 2.9E-11 59.8 4.1 33 389-421 2-34 (35)
33 PRK11447 cellulose synthase su 98.2 0.00039 8.4E-09 86.9 28.2 253 160-485 471-739 (1157)
34 KOG4626 O-linked N-acetylgluco 98.2 7.9E-05 1.7E-09 81.5 18.5 279 160-484 126-415 (966)
35 COG2956 Predicted N-acetylgluc 98.2 0.00025 5.5E-09 72.4 21.0 63 143-220 35-98 (389)
36 TIGR00756 PPR pentatricopeptid 98.2 2.7E-06 5.9E-11 58.2 4.6 35 423-457 1-35 (35)
37 PRK09782 bacteriophage N4 rece 98.1 0.00049 1.1E-08 83.2 25.6 230 190-486 476-706 (987)
38 PF13812 PPR_3: Pentatricopept 98.1 3.8E-06 8.3E-11 57.3 4.1 33 192-224 2-34 (34)
39 PRK14574 hmsH outer membrane p 98.1 0.00088 1.9E-08 79.5 26.2 286 162-486 114-445 (822)
40 TIGR02521 type_IV_pilW type IV 98.1 0.00071 1.5E-08 66.9 21.3 157 294-486 41-198 (234)
41 PF13812 PPR_3: Pentatricopept 98.1 6.7E-06 1.5E-10 56.0 4.5 32 389-420 3-34 (34)
42 PRK14574 hmsH outer membrane p 98.0 0.0012 2.6E-08 78.4 25.7 284 160-486 44-396 (822)
43 PRK10747 putative protoheme IX 98.0 0.00078 1.7E-08 74.1 21.0 219 159-449 162-388 (398)
44 PRK09782 bacteriophage N4 rece 97.9 0.0019 4.2E-08 78.2 24.7 216 164-451 490-706 (987)
45 PF01535 PPR: PPR repeat; Int 97.8 1.5E-05 3.2E-10 53.0 3.2 31 192-222 1-31 (31)
46 KOG1840 Kinesin light chain [C 97.8 0.0034 7.4E-08 70.0 23.5 241 159-484 208-477 (508)
47 KOG1126 DNA-binding cell divis 97.8 0.003 6.4E-08 70.4 22.7 283 165-494 334-626 (638)
48 PF01535 PPR: PPR repeat; Int 97.8 2E-05 4.4E-10 52.3 3.7 29 389-417 2-30 (31)
49 PRK12370 invasion protein regu 97.8 0.0022 4.7E-08 73.8 22.5 116 165-313 276-401 (553)
50 PRK12370 invasion protein regu 97.8 0.0012 2.6E-08 75.9 20.2 239 190-485 255-501 (553)
51 PF12569 NARP1: NMDA receptor- 97.7 0.0055 1.2E-07 69.0 23.2 261 200-497 13-302 (517)
52 PF12569 NARP1: NMDA receptor- 97.7 0.024 5.3E-07 63.8 27.4 295 158-486 12-334 (517)
53 PF08579 RPM2: Mitochondrial r 97.6 0.00038 8.3E-09 60.6 9.5 76 394-469 32-116 (120)
54 PF10037 MRP-S27: Mitochondria 97.6 0.00042 9E-09 75.5 11.9 113 358-470 72-186 (429)
55 TIGR00540 hemY_coli hemY prote 97.6 0.0068 1.5E-07 66.9 21.3 226 161-448 164-396 (409)
56 PF08579 RPM2: Mitochondrial r 97.5 0.00055 1.2E-08 59.6 8.5 78 358-435 31-117 (120)
57 COG3071 HemY Uncharacterized e 97.5 0.038 8.3E-07 58.4 23.6 282 163-486 97-390 (400)
58 PF06239 ECSIT: Evolutionarily 97.5 0.0011 2.4E-08 64.6 11.0 90 384-473 44-154 (228)
59 KOG4626 O-linked N-acetylgluco 97.4 0.011 2.5E-07 65.2 19.5 258 192-486 117-383 (966)
60 KOG1840 Kinesin light chain [C 97.4 0.016 3.5E-07 64.7 20.4 213 192-485 200-437 (508)
61 KOG1155 Anaphase-promoting com 97.3 0.13 2.7E-06 55.6 25.0 218 202-486 273-495 (559)
62 COG2956 Predicted N-acetylgluc 97.3 0.06 1.3E-06 55.5 21.7 263 159-486 78-347 (389)
63 PF10037 MRP-S27: Mitochondria 97.3 0.0031 6.8E-08 68.7 13.5 130 374-503 50-185 (429)
64 KOG2003 TPR repeat-containing 97.2 0.027 5.9E-07 59.9 18.8 141 358-504 564-706 (840)
65 PF06239 ECSIT: Evolutionarily 97.2 0.0024 5.1E-08 62.4 10.0 87 350-437 46-153 (228)
66 KOG2003 TPR repeat-containing 97.2 0.011 2.4E-07 62.8 15.2 282 160-484 429-720 (840)
67 PF04733 Coatomer_E: Coatomer 97.1 0.0055 1.2E-07 64.1 12.2 124 358-486 137-265 (290)
68 KOG1129 TPR repeat-containing 97.1 0.062 1.4E-06 55.4 18.9 244 180-486 212-458 (478)
69 KOG2076 RNA polymerase III tra 97.0 0.14 3.1E-06 59.3 23.0 297 160-485 217-554 (895)
70 cd05804 StaR_like StaR_like; a 96.9 0.2 4.4E-06 53.7 23.4 230 200-486 52-293 (355)
71 PRK11189 lipoprotein NlpI; Pro 96.9 0.11 2.4E-06 54.7 20.7 218 204-486 39-265 (296)
72 KOG1126 DNA-binding cell divis 96.9 0.082 1.8E-06 59.3 19.7 235 206-511 334-577 (638)
73 COG3071 HemY Uncharacterized e 96.8 0.11 2.4E-06 55.0 19.0 224 160-455 163-394 (400)
74 PF09295 ChAPs: ChAPs (Chs5p-A 96.7 0.059 1.3E-06 58.6 17.0 122 358-486 175-297 (395)
75 KOG0985 Vesicle coat protein c 96.7 0.087 1.9E-06 61.4 18.6 216 205-482 1089-1304(1666)
76 TIGR03302 OM_YfiO outer membra 96.7 0.079 1.7E-06 53.4 16.5 160 294-486 43-232 (235)
77 cd05804 StaR_like StaR_like; a 96.6 0.32 7E-06 52.2 21.5 228 192-478 7-246 (355)
78 COG4783 Putative Zn-dependent 96.5 0.2 4.3E-06 54.6 18.8 125 348-493 336-461 (484)
79 KOG2076 RNA polymerase III tra 96.5 0.42 9.1E-06 55.6 22.3 82 159-260 149-231 (895)
80 PF04733 Coatomer_E: Coatomer 96.3 0.089 1.9E-06 55.1 14.6 136 360-507 110-251 (290)
81 TIGR02552 LcrH_SycD type III s 96.3 0.13 2.8E-06 46.7 13.9 90 359-450 24-113 (135)
82 KOG2002 TPR-containing nuclear 96.2 0.83 1.8E-05 53.7 22.6 337 159-540 422-801 (1018)
83 PF05843 Suf: Suppressor of fo 96.2 0.097 2.1E-06 54.6 14.4 130 353-486 3-136 (280)
84 cd00189 TPR Tetratricopeptide 96.2 0.073 1.6E-06 43.3 11.0 87 360-448 8-94 (100)
85 KOG1070 rRNA processing protei 96.2 0.48 1E-05 57.5 20.9 191 248-493 1470-1668(1710)
86 PRK15359 type III secretion sy 96.2 0.14 2.9E-06 47.7 13.6 91 394-486 31-121 (144)
87 KOG3785 Uncharacterized conser 96.1 0.18 3.8E-06 52.6 15.1 225 165-460 269-497 (557)
88 KOG1128 Uncharacterized conser 96.1 0.14 3.1E-06 58.0 15.4 225 159-468 407-634 (777)
89 COG3063 PilF Tfp pilus assembl 96.0 1.2 2.5E-05 44.3 19.4 196 193-448 37-233 (250)
90 KOG3081 Vesicle coat complex C 96.0 0.1 2.3E-06 52.5 12.4 137 360-507 116-257 (299)
91 PRK11189 lipoprotein NlpI; Pro 96.0 1.3 2.9E-05 46.4 21.7 230 164-464 40-277 (296)
92 PF09976 TPR_21: Tetratricopep 95.9 0.2 4.3E-06 46.6 13.6 122 358-482 18-143 (145)
93 KOG1156 N-terminal acetyltrans 95.9 2.8 6E-05 47.4 24.0 292 156-486 191-511 (700)
94 COG3063 PilF Tfp pilus assembl 95.9 0.55 1.2E-05 46.5 16.7 151 358-511 41-193 (250)
95 cd00189 TPR Tetratricopeptide 95.9 0.12 2.6E-06 42.0 10.9 96 389-486 2-97 (100)
96 KOG1129 TPR repeat-containing 95.9 0.41 8.9E-06 49.6 16.1 220 162-450 235-457 (478)
97 TIGR02552 LcrH_SycD type III s 95.8 0.24 5.1E-06 45.0 13.5 98 387-486 17-114 (135)
98 PRK10370 formate-dependent nit 95.8 0.53 1.2E-05 46.4 16.6 129 365-499 52-185 (198)
99 PF09295 ChAPs: ChAPs (Chs5p-A 95.8 0.085 1.9E-06 57.4 11.7 116 294-449 179-295 (395)
100 TIGR03302 OM_YfiO outer membra 95.8 1 2.2E-05 45.3 19.1 84 366-451 129-232 (235)
101 KOG1070 rRNA processing protei 95.8 0.52 1.1E-05 57.2 18.6 221 192-474 1459-1688(1710)
102 KOG3616 Selective LIM binding 95.7 0.17 3.6E-06 57.1 13.6 106 358-483 771-876 (1636)
103 TIGR02795 tol_pal_ybgF tol-pal 95.7 0.25 5.4E-06 43.3 12.6 93 392-486 7-105 (119)
104 PRK15359 type III secretion sy 95.6 0.3 6.5E-06 45.4 13.5 121 338-463 11-131 (144)
105 KOG3081 Vesicle coat complex C 95.5 0.54 1.2E-05 47.5 15.1 121 361-486 146-271 (299)
106 PF12921 ATP13: Mitochondrial 95.5 0.1 2.2E-06 47.4 9.2 97 386-502 1-98 (126)
107 KOG1915 Cell cycle control pro 95.4 4.7 0.0001 44.1 22.5 282 161-486 152-466 (677)
108 KOG3941 Intermediate in Toll s 95.4 0.15 3.2E-06 51.7 10.7 100 385-484 65-186 (406)
109 KOG1173 Anaphase-promoting com 95.3 1.2 2.7E-05 49.3 18.4 121 362-485 390-517 (611)
110 TIGR02795 tol_pal_ybgF tol-pal 95.3 0.52 1.1E-05 41.2 13.4 93 358-452 8-106 (119)
111 KOG3785 Uncharacterized conser 95.3 0.16 3.5E-06 52.9 10.9 194 294-497 295-499 (557)
112 KOG0547 Translocase of outer m 95.2 3.1 6.7E-05 45.6 20.7 124 360-486 436-566 (606)
113 KOG1155 Anaphase-promoting com 95.2 3.3 7.1E-05 45.1 20.5 125 358-486 336-461 (559)
114 PF12921 ATP13: Mitochondrial 95.2 0.2 4.3E-06 45.5 10.2 56 417-472 47-103 (126)
115 PRK14720 transcript cleavage f 95.0 3.7 7.9E-05 49.3 22.6 112 358-486 122-252 (906)
116 KOG4340 Uncharacterized conser 94.7 1.9 4.2E-05 44.2 16.4 276 161-511 21-330 (459)
117 PF12895 Apc3: Anaphase-promot 94.7 0.05 1.1E-06 45.3 4.6 80 365-447 2-83 (84)
118 KOG4340 Uncharacterized conser 94.6 1.8 3.9E-05 44.5 15.8 172 248-448 156-336 (459)
119 KOG3616 Selective LIM binding 94.5 0.68 1.5E-05 52.5 14.0 79 394-483 739-817 (1636)
120 PRK04841 transcriptional regul 94.4 3.2 6.9E-05 50.8 21.5 272 161-486 463-760 (903)
121 PF09976 TPR_21: Tetratricopep 94.4 0.8 1.7E-05 42.4 12.7 53 358-412 91-143 (145)
122 PRK04841 transcriptional regul 94.3 8.8 0.00019 46.9 25.0 276 162-486 421-720 (903)
123 KOG0495 HAT repeat protein [RN 94.3 12 0.00027 42.6 24.4 319 192-558 480-816 (913)
124 PRK02603 photosystem I assembl 94.1 1.6 3.6E-05 41.6 14.4 107 389-501 37-160 (172)
125 KOG3941 Intermediate in Toll s 94.0 0.14 3.1E-06 51.8 6.8 84 365-448 85-185 (406)
126 PF12895 Apc3: Anaphase-promot 93.9 0.11 2.4E-06 43.2 5.2 80 400-482 2-83 (84)
127 COG5010 TadD Flp pilus assembl 93.9 2.2 4.9E-05 43.0 15.0 122 358-482 106-227 (257)
128 PRK10370 formate-dependent nit 93.9 1.6 3.5E-05 42.9 14.2 109 353-466 75-186 (198)
129 KOG2047 mRNA splicing factor [ 93.9 6.3 0.00014 44.7 19.6 297 162-485 359-686 (835)
130 PRK02603 photosystem I assembl 93.7 1.6 3.4E-05 41.8 13.5 78 358-437 41-121 (172)
131 KOG2002 TPR-containing nuclear 93.6 9.1 0.0002 45.4 21.0 125 358-486 276-409 (1018)
132 PRK10153 DNA-binding transcrip 93.5 6.2 0.00013 44.9 19.7 146 345-497 331-491 (517)
133 PRK15179 Vi polysaccharide bio 93.5 2.6 5.7E-05 49.6 17.1 131 294-463 96-228 (694)
134 COG4783 Putative Zn-dependent 93.4 2.3 5E-05 46.6 15.1 121 362-486 316-437 (484)
135 PF14559 TPR_19: Tetratricopep 93.3 0.23 4.9E-06 39.2 5.8 52 364-416 3-54 (68)
136 PLN03088 SGT1, suppressor of 93.2 1.3 2.9E-05 47.8 13.4 101 360-465 10-111 (356)
137 KOG1128 Uncharacterized conser 93.2 2.4 5.3E-05 48.5 15.4 212 196-486 403-616 (777)
138 CHL00033 ycf3 photosystem I as 93.1 1.6 3.4E-05 41.5 12.4 59 358-416 41-101 (168)
139 PRK15179 Vi polysaccharide bio 93.1 3.1 6.8E-05 48.9 17.0 124 358-486 92-217 (694)
140 PF03704 BTAD: Bacterial trans 92.8 0.55 1.2E-05 43.5 8.4 57 391-448 66-122 (146)
141 COG5107 RNA14 Pre-mRNA 3'-end 92.7 2.5 5.5E-05 45.7 13.9 139 352-497 398-540 (660)
142 KOG1914 mRNA cleavage and poly 92.7 3.3 7.3E-05 45.9 15.0 129 353-486 368-501 (656)
143 PF05843 Suf: Suppressor of fo 92.7 0.57 1.2E-05 48.9 9.3 97 388-486 2-99 (280)
144 PF14559 TPR_19: Tetratricopep 92.5 0.5 1.1E-05 37.2 6.7 52 434-486 3-54 (68)
145 PF14938 SNAP: Soluble NSF att 92.5 2.9 6.2E-05 43.6 14.2 101 366-467 129-245 (282)
146 KOG2796 Uncharacterized conser 92.1 8.3 0.00018 39.2 15.7 131 358-493 183-320 (366)
147 KOG1173 Anaphase-promoting com 92.0 9.3 0.0002 42.8 17.5 242 192-465 245-530 (611)
148 PLN03088 SGT1, suppressor of 92.0 2.7 5.9E-05 45.4 13.8 96 395-494 10-105 (356)
149 KOG0985 Vesicle coat protein c 91.8 6.5 0.00014 46.7 16.6 108 358-480 1110-1217(1666)
150 KOG0495 HAT repeat protein [RN 91.3 32 0.00069 39.4 22.8 279 162-486 562-846 (913)
151 PF04840 Vps16_C: Vps16, C-ter 91.3 2.1 4.6E-05 45.4 11.7 105 358-482 183-287 (319)
152 KOG2376 Signal recognition par 91.2 30 0.00066 39.1 20.5 137 367-506 356-507 (652)
153 KOG1915 Cell cycle control pro 91.1 4.8 0.0001 44.0 13.8 120 361-486 150-273 (677)
154 KOG1156 N-terminal acetyltrans 91.1 21 0.00046 40.6 19.3 293 192-512 144-503 (700)
155 KOG2376 Signal recognition par 90.7 16 0.00035 41.2 17.8 116 359-486 19-139 (652)
156 CHL00033 ycf3 photosystem I as 90.6 5.2 0.00011 37.9 12.8 95 387-482 35-138 (168)
157 smart00299 CLH Clathrin heavy 90.4 7.5 0.00016 35.5 13.3 120 358-500 13-133 (140)
158 KOG1914 mRNA cleavage and poly 90.4 5.7 0.00012 44.1 13.8 62 187-260 363-425 (656)
159 PF12688 TPR_5: Tetratrico pep 90.3 7 0.00015 35.1 12.3 103 360-468 9-117 (120)
160 COG5010 TadD Flp pilus assembl 90.2 8.3 0.00018 39.1 13.9 146 360-510 74-221 (257)
161 PRK10803 tol-pal system protei 90.2 8 0.00017 39.9 14.4 102 388-493 144-251 (263)
162 PF13432 TPR_16: Tetratricopep 90.0 1.6 3.5E-05 33.9 7.3 55 430-486 5-60 (65)
163 PLN02789 farnesyltranstransfer 89.9 30 0.00064 36.8 23.7 225 197-484 43-300 (320)
164 PF03704 BTAD: Bacterial trans 89.8 5.5 0.00012 36.7 11.9 61 424-485 64-124 (146)
165 PRK10866 outer membrane biogen 89.5 18 0.0004 36.7 16.4 158 294-484 42-239 (243)
166 PF13432 TPR_16: Tetratricopep 89.3 1.5 3.2E-05 34.1 6.6 56 360-416 5-60 (65)
167 KOG0547 Translocase of outer m 89.1 14 0.00031 40.7 15.5 155 326-486 336-491 (606)
168 PF13170 DUF4003: Protein of u 89.1 13 0.00028 39.1 15.2 131 300-463 78-223 (297)
169 KOG3617 WD40 and TPR repeat-co 89.0 4.4 9.6E-05 47.0 12.0 224 160-448 738-993 (1416)
170 KOG1538 Uncharacterized conser 88.1 19 0.00042 40.9 16.0 56 192-260 599-656 (1081)
171 PF12688 TPR_5: Tetratrico pep 87.5 9.7 0.00021 34.2 11.3 89 395-485 9-103 (120)
172 PF13170 DUF4003: Protein of u 87.3 12 0.00027 39.2 13.7 70 207-287 78-150 (297)
173 KOG2047 mRNA splicing factor [ 87.1 56 0.0012 37.5 18.9 292 159-493 178-512 (835)
174 PF13424 TPR_12: Tetratricopep 86.6 1.7 3.6E-05 35.2 5.5 59 389-447 7-71 (78)
175 KOG1174 Anaphase-promoting com 86.6 53 0.0011 35.7 20.7 258 195-486 198-467 (564)
176 PF13371 TPR_9: Tetratricopept 86.3 5.2 0.00011 31.7 8.2 55 431-486 4-58 (73)
177 KOG2053 Mitochondrial inherita 85.3 50 0.0011 39.2 17.9 228 202-492 20-259 (932)
178 PRK10803 tol-pal system protei 85.0 14 0.0003 38.2 12.5 94 353-451 145-246 (263)
179 PRK10866 outer membrane biogen 84.8 28 0.00061 35.4 14.6 87 358-448 150-238 (243)
180 PLN03098 LPA1 LOW PSII ACCUMUL 84.7 14 0.0003 40.7 12.7 63 351-416 75-141 (453)
181 PF14938 SNAP: Soluble NSF att 84.5 17 0.00037 37.7 13.3 113 358-487 100-226 (282)
182 PLN03098 LPA1 LOW PSII ACCUMUL 84.4 12 0.00027 41.1 12.1 66 384-451 72-141 (453)
183 PRK15363 pathogenicity island 84.2 15 0.00032 34.6 11.0 86 398-486 46-132 (157)
184 KOG2297 Predicted translation 84.0 5.3 0.00012 41.2 8.6 59 81-140 31-89 (412)
185 PRK14720 transcript cleavage f 83.2 27 0.00058 42.2 15.3 130 349-486 28-178 (906)
186 PRK15363 pathogenicity island 83.2 20 0.00043 33.8 11.5 89 360-451 43-132 (157)
187 PF13414 TPR_11: TPR repeat; P 82.9 5.3 0.00012 31.3 6.8 26 390-415 6-31 (69)
188 KOG3617 WD40 and TPR repeat-co 82.7 94 0.002 36.8 18.3 22 358-379 973-994 (1416)
189 PF04840 Vps16_C: Vps16, C-ter 82.6 61 0.0013 34.5 16.4 106 387-511 177-282 (319)
190 KOG3060 Uncharacterized conser 82.4 61 0.0013 33.0 17.7 123 358-486 58-183 (289)
191 KOG4570 Uncharacterized conser 82.0 6.2 0.00013 41.0 8.1 99 277-416 63-164 (418)
192 PRK10153 DNA-binding transcrip 81.6 69 0.0015 36.5 17.4 89 369-461 401-490 (517)
193 PF13424 TPR_12: Tetratricopep 81.4 3.7 8E-05 33.2 5.4 63 423-485 6-74 (78)
194 PF13371 TPR_9: Tetratricopept 81.2 5.9 0.00013 31.4 6.5 53 362-415 5-57 (73)
195 PLN02789 farnesyltranstransfer 80.6 73 0.0016 33.9 16.2 130 358-493 43-176 (320)
196 KOG4570 Uncharacterized conser 80.6 14 0.00031 38.4 10.1 103 382-486 59-164 (418)
197 KOG2053 Mitochondrial inherita 80.1 32 0.00068 40.8 13.9 118 363-486 20-139 (932)
198 PF09613 HrpB1_HrpK: Bacterial 78.4 42 0.00091 31.7 11.9 18 363-380 21-38 (160)
199 COG5107 RNA14 Pre-mRNA 3'-end 78.3 37 0.00081 37.2 12.8 58 192-260 398-456 (660)
200 PF07035 Mic1: Colon cancer-as 78.0 56 0.0012 31.2 12.8 102 372-483 14-115 (167)
201 PF07079 DUF1347: Protein of u 77.8 96 0.0021 34.3 15.7 174 294-507 16-210 (549)
202 PF13762 MNE1: Mitochondrial s 76.5 56 0.0012 30.3 12.0 102 374-475 24-133 (145)
203 PF13414 TPR_11: TPR repeat; P 75.7 12 0.00025 29.2 6.6 64 422-486 3-67 (69)
204 KOG1538 Uncharacterized conser 74.7 40 0.00087 38.5 12.2 75 363-448 758-843 (1081)
205 PF10300 DUF3808: Protein of u 74.4 48 0.001 37.3 13.4 138 365-505 246-402 (468)
206 COG4700 Uncharacterized protei 74.4 89 0.0019 30.4 14.5 123 358-484 95-220 (251)
207 COG3898 Uncharacterized membra 74.3 1.4E+02 0.0029 32.5 17.4 248 203-486 132-392 (531)
208 PHA02875 ankyrin repeat protei 73.4 59 0.0013 35.6 13.8 36 198-237 6-43 (413)
209 smart00299 CLH Clathrin heavy 73.4 29 0.00063 31.6 9.6 89 390-486 10-98 (140)
210 PF13512 TPR_18: Tetratricopep 72.3 32 0.00069 31.8 9.3 70 364-434 22-94 (142)
211 PF07079 DUF1347: Protein of u 72.2 31 0.00068 37.8 10.4 47 354-400 130-180 (549)
212 COG3629 DnrI DNA-binding trans 71.7 32 0.00068 35.7 10.1 79 424-503 155-238 (280)
213 PF09613 HrpB1_HrpK: Bacterial 71.5 93 0.002 29.4 12.4 113 389-507 9-125 (160)
214 PF00637 Clathrin: Region in C 71.0 1.9 4.1E-05 39.7 1.0 84 358-448 13-96 (143)
215 PF10602 RPN7: 26S proteasome 70.6 53 0.0011 31.6 11.0 97 388-486 37-142 (177)
216 PF13525 YfiO: Outer membrane 69.4 61 0.0013 31.7 11.5 73 160-237 15-88 (203)
217 KOG4162 Predicted calmodulin-b 69.3 1.6E+02 0.0035 34.6 15.7 200 188-414 320-540 (799)
218 PF13929 mRNA_stabil: mRNA sta 66.0 1E+02 0.0022 32.1 12.2 139 365-503 141-289 (292)
219 PF07035 Mic1: Colon cancer-as 65.8 1.3E+02 0.0027 28.8 14.2 127 343-486 21-149 (167)
220 PF10602 RPN7: 26S proteasome 65.1 61 0.0013 31.2 10.2 90 358-449 42-140 (177)
221 KOG0553 TPR repeat-containing 65.0 76 0.0016 33.1 11.1 96 397-497 91-187 (304)
222 PF13525 YfiO: Outer membrane 63.5 1.5E+02 0.0033 28.9 13.7 154 294-493 15-175 (203)
223 COG3629 DnrI DNA-binding trans 63.1 55 0.0012 34.0 9.9 79 388-467 154-237 (280)
224 PF09205 DUF1955: Domain of un 63.1 45 0.00098 30.5 7.9 60 358-418 92-151 (161)
225 PF13176 TPR_7: Tetratricopept 63.1 13 0.00028 25.3 3.7 23 390-412 2-24 (36)
226 PF00637 Clathrin: Region in C 63.0 1.8 3.9E-05 39.8 -0.9 88 392-486 12-99 (143)
227 PF13929 mRNA_stabil: mRNA sta 62.5 80 0.0017 32.8 10.8 99 371-469 185-290 (292)
228 PF09205 DUF1955: Domain of un 62.2 1.3E+02 0.0028 27.7 13.1 122 365-492 15-153 (161)
229 KOG0553 TPR repeat-containing 61.4 96 0.0021 32.3 11.0 101 361-466 90-191 (304)
230 KOG1920 IkappaB kinase complex 61.2 22 0.00048 43.3 7.4 73 363-446 976-1050(1265)
231 PF13176 TPR_7: Tetratricopept 60.8 17 0.00037 24.6 4.0 26 193-218 1-26 (36)
232 COG4235 Cytochrome c biogenesi 60.8 1.4E+02 0.003 31.1 12.2 107 385-495 154-263 (287)
233 PF02284 COX5A: Cytochrome c o 60.3 47 0.001 28.8 7.2 60 370-430 28-87 (108)
234 PF13512 TPR_18: Tetratricopep 59.7 1.1E+02 0.0024 28.3 10.2 90 397-486 20-128 (142)
235 PF04184 ST7: ST7 protein; In 59.6 1.1E+02 0.0023 34.3 11.6 73 360-432 267-341 (539)
236 COG3118 Thioredoxin domain-con 59.5 2.3E+02 0.005 29.6 13.3 130 360-493 142-272 (304)
237 KOG0276 Vesicle coat complex C 58.7 36 0.00078 38.6 7.9 101 362-483 647-747 (794)
238 KOG1125 TPR repeat-containing 58.6 1.4E+02 0.0031 33.8 12.5 144 207-409 410-564 (579)
239 COG3118 Thioredoxin domain-con 58.1 2.4E+02 0.0052 29.5 14.1 114 358-474 174-289 (304)
240 COG1729 Uncharacterized protei 58.1 1.2E+02 0.0025 31.2 11.0 100 389-493 144-249 (262)
241 TIGR02561 HrpB1_HrpK type III 56.9 1.6E+02 0.0034 27.6 10.6 77 364-445 22-99 (153)
242 PF04184 ST7: ST7 protein; In 56.8 1.7E+02 0.0036 32.9 12.5 58 428-485 265-323 (539)
243 COG0735 Fur Fe2+/Zn2+ uptake r 55.5 84 0.0018 29.2 8.9 62 443-505 7-69 (145)
244 cd00923 Cyt_c_Oxidase_Va Cytoc 55.4 61 0.0013 27.9 7.0 61 369-430 24-84 (103)
245 PF13374 TPR_10: Tetratricopep 55.2 28 0.00061 23.7 4.5 27 388-414 3-29 (42)
246 KOG2280 Vacuolar assembly/sort 54.8 75 0.0016 37.1 9.8 100 361-479 693-792 (829)
247 PF04053 Coatomer_WDAD: Coatom 54.6 1.3E+02 0.0029 33.5 11.8 45 203-259 273-318 (443)
248 KOG3060 Uncharacterized conser 53.9 2.6E+02 0.0057 28.6 18.5 82 366-450 134-219 (289)
249 PHA03100 ankyrin repeat protei 53.5 1.5E+02 0.0032 33.1 12.5 245 195-493 36-310 (480)
250 PF13762 MNE1: Mitochondrial s 53.4 77 0.0017 29.4 8.1 80 358-437 45-130 (145)
251 PF10345 Cohesin_load: Cohesin 53.2 4.3E+02 0.0092 30.8 18.4 88 398-485 372-481 (608)
252 PF11848 DUF3368: Domain of un 53.0 42 0.00091 24.7 5.2 37 199-235 10-46 (48)
253 PF04053 Coatomer_WDAD: Coatom 51.3 92 0.002 34.8 9.9 75 354-447 298-372 (443)
254 PF13428 TPR_14: Tetratricopep 50.9 32 0.00069 24.4 4.2 28 389-416 3-30 (44)
255 COG1729 Uncharacterized protei 50.9 1.7E+02 0.0038 30.0 10.9 97 353-451 144-244 (262)
256 KOG4162 Predicted calmodulin-b 50.9 3.3E+02 0.0071 32.2 14.1 207 220-486 317-542 (799)
257 PF12796 Ank_2: Ankyrin repeat 50.2 48 0.001 27.2 5.9 55 393-456 29-86 (89)
258 PRK15331 chaperone protein Sic 49.1 1.9E+02 0.0041 27.5 10.1 87 362-450 47-133 (165)
259 COG4235 Cytochrome c biogenesi 49.0 2.1E+02 0.0046 29.8 11.3 111 350-466 155-269 (287)
260 PF10300 DUF3808: Protein of u 49.0 4.3E+02 0.0094 29.7 16.0 154 248-449 200-374 (468)
261 PF13374 TPR_10: Tetratricopep 48.5 42 0.00091 22.8 4.5 28 192-219 3-30 (42)
262 COG4649 Uncharacterized protei 47.7 2.7E+02 0.0058 26.9 10.7 131 294-456 68-201 (221)
263 KOG2041 WD40 repeat protein [G 47.0 1.6E+02 0.0034 34.4 10.6 91 383-486 848-952 (1189)
264 COG2178 Predicted RNA-binding 46.5 1.5E+02 0.0032 29.0 9.0 108 369-486 20-150 (204)
265 KOG2796 Uncharacterized conser 46.1 2.8E+02 0.006 28.6 11.2 65 365-432 265-329 (366)
266 cd00923 Cyt_c_Oxidase_Va Cytoc 45.6 1.2E+02 0.0026 26.2 7.3 47 440-486 25-71 (103)
267 PF13428 TPR_14: Tetratricopep 45.5 46 0.00099 23.6 4.3 28 459-486 3-30 (44)
268 PF11663 Toxin_YhaV: Toxin wit 45.0 28 0.00061 31.7 3.7 34 160-201 105-138 (140)
269 KOG0548 Molecular co-chaperone 44.7 5.1E+02 0.011 29.3 14.1 129 360-501 306-466 (539)
270 PF11207 DUF2989: Protein of u 44.2 1.5E+02 0.0034 29.1 9.0 77 364-442 119-198 (203)
271 PF11848 DUF3368: Domain of un 43.4 74 0.0016 23.3 5.2 31 434-464 14-44 (48)
272 PF11838 ERAP1_C: ERAP1-like C 43.1 3.7E+02 0.0079 28.0 12.8 92 358-452 135-231 (324)
273 PRK10564 maltose regulon perip 42.3 43 0.00094 34.9 5.1 49 185-233 250-299 (303)
274 KOG2297 Predicted translation 42.3 4.4E+02 0.0095 27.8 12.3 19 389-407 323-341 (412)
275 KOG1127 TPR repeat-containing 41.7 3.6E+02 0.0077 33.1 12.7 126 358-486 498-625 (1238)
276 PF02284 COX5A: Cytochrome c o 41.2 2.4E+02 0.0053 24.6 9.3 47 440-486 28-74 (108)
277 KOG0543 FKBP-type peptidyl-pro 40.7 3.4E+02 0.0073 29.6 11.6 99 360-461 216-328 (397)
278 PHA03100 ankyrin repeat protei 40.4 1.1E+02 0.0023 34.2 8.7 164 294-472 42-227 (480)
279 PF11207 DUF2989: Protein of u 40.2 1.7E+02 0.0037 28.8 8.6 78 398-477 118-198 (203)
280 PRK15331 chaperone protein Sic 38.9 1.9E+02 0.0042 27.4 8.5 88 396-486 46-134 (165)
281 KOG0276 Vesicle coat complex C 35.3 2.7E+02 0.0059 32.0 10.1 82 351-448 666-747 (794)
282 TIGR02508 type_III_yscG type I 35.1 2E+02 0.0043 25.1 7.1 47 434-486 51-97 (115)
283 COG4455 ImpE Protein of avirul 34.7 2.6E+02 0.0056 28.1 8.7 50 359-409 8-57 (273)
284 PHA02875 ankyrin repeat protei 33.7 1.8E+02 0.004 31.7 9.0 165 295-476 10-184 (413)
285 PRK15180 Vi polysaccharide bio 33.7 6E+02 0.013 28.5 12.1 123 360-486 297-420 (831)
286 TIGR02508 type_III_yscG type I 33.6 2.6E+02 0.0056 24.4 7.5 79 367-452 20-98 (115)
287 TIGR02561 HrpB1_HrpK type III 33.2 4.1E+02 0.009 24.9 14.0 97 399-502 22-120 (153)
288 COG3898 Uncharacterized membra 33.2 6.8E+02 0.015 27.4 15.9 128 364-497 166-301 (531)
289 PF10366 Vps39_1: Vacuolar sor 32.8 2.3E+02 0.005 24.8 7.6 26 425-450 42-67 (108)
290 PF11846 DUF3366: Domain of un 32.1 1.5E+02 0.0033 28.6 7.1 32 455-486 142-173 (193)
291 TIGR03504 FimV_Cterm FimV C-te 31.9 76 0.0016 23.0 3.6 22 394-415 6-27 (44)
292 KOG0548 Molecular co-chaperone 31.1 4E+02 0.0086 30.2 10.5 104 360-467 10-114 (539)
293 PRK10564 maltose regulon perip 30.7 83 0.0018 32.9 5.0 43 383-425 252-295 (303)
294 PF07721 TPR_4: Tetratricopept 30.7 77 0.0017 19.7 3.1 18 393-410 7-24 (26)
295 KOG4555 TPR repeat-containing 30.6 4.3E+02 0.0094 24.3 10.4 52 397-449 53-104 (175)
296 KOG2908 26S proteasome regulat 30.6 4.8E+02 0.01 27.9 10.4 84 358-441 81-176 (380)
297 COG4700 Uncharacterized protei 29.9 5.4E+02 0.012 25.2 12.5 107 383-493 85-194 (251)
298 PF12926 MOZART2: Mitotic-spin 29.8 3.3E+02 0.0072 22.9 7.4 42 443-484 29-70 (88)
299 PF13281 DUF4071: Domain of un 29.7 7.6E+02 0.017 26.9 18.6 32 187-220 139-170 (374)
300 COG5108 RPO41 Mitochondrial DN 29.0 2.2E+02 0.0047 33.1 8.1 91 357-450 33-131 (1117)
301 PF09670 Cas_Cas02710: CRISPR- 28.9 7E+02 0.015 27.1 12.2 56 360-416 139-198 (379)
302 PF00515 TPR_1: Tetratricopept 28.7 1.5E+02 0.0032 19.2 4.5 27 389-415 3-29 (34)
303 PRK11906 transcriptional regul 28.5 5.6E+02 0.012 28.6 11.1 112 366-483 318-433 (458)
304 PF11846 DUF3366: Domain of un 28.0 2.3E+02 0.005 27.3 7.6 60 391-450 112-172 (193)
305 COG4455 ImpE Protein of avirul 27.8 2.7E+02 0.0059 27.9 7.6 79 389-468 3-83 (273)
306 PRK14956 DNA polymerase III su 27.7 9.3E+02 0.02 27.2 14.1 109 370-504 184-294 (484)
307 PF10475 DUF2450: Protein of u 27.7 6.5E+02 0.014 26.2 11.4 132 358-502 104-240 (291)
308 KOG0543 FKBP-type peptidyl-pro 27.7 6.6E+02 0.014 27.4 11.2 105 396-503 217-336 (397)
309 PF10366 Vps39_1: Vacuolar sor 27.5 3.4E+02 0.0074 23.7 7.7 26 390-415 42-67 (108)
310 PF13281 DUF4071: Domain of un 27.2 8.4E+02 0.018 26.6 18.5 124 361-486 188-334 (374)
311 smart00544 MA3 Domain in DAP-5 26.8 4.1E+02 0.0088 22.9 8.3 98 389-486 4-105 (113)
312 PHA02989 ankyrin repeat protei 26.8 1.6E+02 0.0036 33.1 7.2 143 306-457 18-175 (494)
313 KOG2610 Uncharacterized conser 26.8 6.1E+02 0.013 27.2 10.4 120 364-486 115-238 (491)
314 TIGR03504 FimV_Cterm FimV C-te 26.8 1.2E+02 0.0027 21.9 4.0 23 429-451 6-28 (44)
315 COG0457 NrfG FOG: TPR repeat [ 25.3 5.2E+02 0.011 23.5 16.1 128 358-486 65-196 (291)
316 PRK07764 DNA polymerase III su 25.3 1.1E+03 0.023 28.8 13.8 82 369-454 182-279 (824)
317 PF11663 Toxin_YhaV: Toxin wit 24.6 73 0.0016 29.2 2.9 21 436-456 109-129 (140)
318 PF13431 TPR_17: Tetratricopep 23.9 78 0.0017 21.2 2.4 22 386-407 12-33 (34)
319 COG2454 Uncharacterized conser 23.2 1.2E+02 0.0026 29.6 4.3 27 624-653 113-139 (211)
320 PF13174 TPR_6: Tetratricopept 23.2 1E+02 0.0022 19.5 2.9 22 465-486 8-29 (33)
321 PRK14958 DNA polymerase III su 22.9 8.3E+02 0.018 27.8 11.8 79 378-459 191-282 (509)
322 KOG1585 Protein required for f 22.7 8.5E+02 0.018 25.0 11.5 21 358-378 97-117 (308)
323 COG4003 Uncharacterized protei 22.6 97 0.0021 25.6 3.0 27 356-382 35-61 (98)
324 KOG2041 WD40 repeat protein [G 22.4 7.1E+02 0.015 29.3 10.6 54 421-483 851-904 (1189)
325 PF14689 SPOB_a: Sensor_kinase 22.3 1.2E+02 0.0026 23.6 3.5 25 391-415 27-51 (62)
326 PHA02989 ankyrin repeat protei 22.2 1.1E+03 0.024 26.3 13.3 118 302-424 86-215 (494)
327 KOG4077 Cytochrome c oxidase, 21.9 3.9E+02 0.0085 24.3 6.9 59 370-429 67-125 (149)
328 PF08631 SPO22: Meiosis protei 21.6 8.9E+02 0.019 24.8 23.1 98 358-458 90-193 (278)
329 KOG1464 COP9 signalosome, subu 21.6 9.2E+02 0.02 25.0 11.2 123 364-486 39-174 (440)
330 PF14689 SPOB_a: Sensor_kinase 21.5 1.2E+02 0.0026 23.6 3.3 25 462-486 28-52 (62)
331 cd07229 Pat_TGL3_like Triacylg 21.1 3.5E+02 0.0075 29.7 7.9 136 304-474 99-254 (391)
332 KOG2908 26S proteasome regulat 21.0 7E+02 0.015 26.7 9.6 86 391-476 79-176 (380)
333 COG2178 Predicted RNA-binding 20.9 5.5E+02 0.012 25.2 8.2 97 352-450 30-149 (204)
334 PF13181 TPR_8: Tetratricopept 20.3 2.4E+02 0.0051 18.0 4.3 26 389-414 3-28 (34)
335 KOG3360 Acylphosphatase [Energ 20.3 62 0.0014 27.6 1.5 28 588-615 55-82 (98)
336 cd00280 TRFH Telomeric Repeat 20.1 5.4E+02 0.012 25.1 7.9 64 369-435 86-156 (200)
337 COG3947 Response regulator con 20.1 4.4E+02 0.0095 27.7 7.7 58 390-448 282-339 (361)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.5e-54 Score=511.26 Aligned_cols=481 Identities=13% Similarity=0.117 Sum_probs=385.4
Q ss_pred hhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCC--------------------------CCCCcHHHHHHHHHHH
Q 005580 148 SKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSK--------------------------KDRSEQFQLRVELDMC 201 (690)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~--------------------------~~~p~~~tyn~lI~~~ 201 (690)
...++..+. .+.+.|+..+|.++|++|.+.|..+.. -..||..+||.+|.+|
T Consensus 370 ~~~~~~~y~--~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 370 SPEYIDAYN--RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred chHHHHHHH--HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 444555555 677889999999999999887754311 0138999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccch
Q 005580 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQ 280 (690)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~t 280 (690)
++.|+++.|+++|++|++.|+.||.++||+||++|+ ++|++++|.++|+ +|.+. |+. |.+|
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~----------k~G~vd~A~~vf~-------eM~~~-Gv~PdvvT 509 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA----------KSGKVDAMFEVFH-------EMVNA-GVEANVHT 509 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------hCcCHHHHHHHHH-------HHHHc-CCCCCHHH
Confidence 999999999999999999999999999999999999 9999999999995 88877 887 9999
Q ss_pred hhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhh--cCCCCChhh
Q 005580 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRK--KDWSIDNQD 353 (690)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~--~g~~pd~~t 353 (690)
||+||++ |++.|++++|.++|++|.+.|+.||.+||+ .+|.+|| +.|..+|.+|.. .|+.||.++
T Consensus 510 ynaLI~g------y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn--sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 510 FGALIDG------CARAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred HHHHHHH------HHHCcCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 9999999 999999999999999999999999999999 9999999 567789999976 689999999
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 005580 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (690)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (690)
||+ ||++|++.|++++|.++|++|.+.|+.|+..+||+||.+|++.|++++|.++|++|.+.|+.||.+||++||++|+
T Consensus 582 yna-LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 582 VGA-LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHH-HHHHHcchHHHHh
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEAARL 510 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~-I~~~~~~~~~~~a 510 (690)
+.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|... ++.|+ +|++ |.++|+.+..
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~--g~~PdvvtyN~LI~gy~k~G~~--- 735 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI--KLRPTVSTMNALITALCEGNQL--- 735 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCH---
Confidence 99999999999999999999999999999999999999999999999999998 77777 8988 8888887764
Q ss_pred hcccchhhHHHHHhhhcCCccccccccCCCcceEEeeeecCCCcccccccce----------eecCCCHHHHHHHHHHHH
Q 005580 511 GKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKL----------AIIDLDPIETEKFAESVA 580 (690)
Q Consensus 511 ~~~~~~~~~v~ea~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~c~~~L----------~~~~l~~~e~~~l~~~i~ 580 (690)
++|++ +|.+|...|+.||.+|| +.++.++|+.+.... .++.++...+..++....
T Consensus 736 ----------eeAle----lf~eM~~~Gi~Pd~~Ty-~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 736 ----------PKALE----VLSEMKRLGLCPNTITY-SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred ----------HHHHH----HHHHHHHcCCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 55556 88889999999999999 667777777765322 345555566666654321
Q ss_pred H----HHhh----------------hhcchhHHHHHHHHhhcCCcc-----EEEeccccccccCCCCChhHHHHHHHHHH
Q 005580 581 S----IAIK----------------RERNSSFQKFQKWLDYYGPFE-----AVVDAANVGLYSQRNFKPARVNAVVNGIR 635 (690)
Q Consensus 581 ~----~~~~----------------~~~~~~~~~F~~~l~~~~pyd-----~viDGaNvg~~~~~~~~~~~l~~vv~~l~ 635 (690)
+ .... .-....+..|++|++.+-.+| .|+.+.. ...+ ......+++.+
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~----~~~~--~~~~~~m~~~m- 873 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQ----LPHD--ATLRNRLIENL- 873 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc----cccc--HHHHHHHHHHh-
Confidence 1 0000 001246778888888775444 4443221 1111 12222222222
Q ss_pred hhCCCCCccEEEecccccCCCCCCChhHHHHHHHHHhCCceecCCCCCCCCcCC
Q 005580 636 QKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCYK 689 (690)
Q Consensus 636 ~~~~~~~~~lvvL~~~~~~~~~~~~~~~~~l~~~w~~~~~ly~tp~~snDD~yw 689 (690)
...+..|-....+.++.+.....+++..+++++...|. .|+.+.+++-|
T Consensus 874 --~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi---~p~~~~~~~~~ 922 (1060)
T PLN03218 874 --GISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGV---VPSVSFKKSPI 922 (1060)
T ss_pred --ccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCC---CCCcccccCce
Confidence 11223333333444444322123567788888888884 46665444444
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6e-54 Score=509.22 Aligned_cols=418 Identities=12% Similarity=0.132 Sum_probs=286.6
Q ss_pred cccchhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005580 144 GIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIK 223 (690)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~ 223 (690)
..+...+||..+. .+++.++.++|.++|++|.+. |+.||.++||+||++|++.|++++|+++|++|+..|+.
T Consensus 468 l~pD~~tynsLI~--~y~k~G~vd~A~~vf~eM~~~------Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 468 LKADCKLYTTLIS--TCAKSGKVDAMFEVFHEMVNA------GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred CCCCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 3444455555555 555555555666666665333 34555577777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccccccc-CCCC-ccchhhccccccccccccccCCChh
Q 005580 224 LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMD-NNGQLDYGSSPMIDKLESNSSYRFD 301 (690)
Q Consensus 224 pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~-~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~ 301 (690)
||.+|||+||.+|+ +.|++++|.++|. +|... .|+. |.++||+||++ |++.|+++
T Consensus 540 PD~vTYnsLI~a~~----------k~G~~deA~~lf~-------eM~~~~~gi~PD~vTynaLI~a------y~k~G~ld 596 (1060)
T PLN03218 540 PDRVVFNALISACG----------QSGAVDRAFDVLA-------EMKAETHPIDPDHITVGALMKA------CANAGQVD 596 (1060)
T ss_pred CCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHhcCCCCCcHHHHHHHHHH------HHHCCCHH
Confidence 77777777777777 6777777777773 56532 2555 66777777777 77777777
Q ss_pred hHHHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHH
Q 005580 302 DLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE 376 (690)
Q Consensus 302 ~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~ 376 (690)
+|.++|++|.+.|+.|+.++|+ .+|.+|| ++|..+|.+|...|+.||.++|++ ||++|++.|++++|.++|+
T Consensus 597 eA~elf~~M~e~gi~p~~~tyn--sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns-LI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA-LVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHH
Confidence 7777777777777777777777 7777777 455667777777777777777777 7777777777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 005580 377 KMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (690)
Q Consensus 377 ~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd 456 (690)
+|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+||+||.+||+.|++++|.++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHcchHHHHhhcc-----cchh-------hHHHH
Q 005580 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKK-----KWNE-------SLIKD 522 (690)
Q Consensus 457 ~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~~~~a~~~-----~~~~-------~~v~e 522 (690)
..||++||.+|++.|++++|.++|.+|.+. |+.|+ +|+.|.++|.. ...+++.. .|+. .-..+
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~--Gi~pd~~tynsLIglc~~-~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKED--GIKPNLVMCRCITGLCLR-RFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHH-HHHHHhhhhhhhhhhhccccccccchHHH
Confidence 777777777777777777777777777777 55555 67765566542 12222211 1111 12356
Q ss_pred HhhhcCCccccccccCCCcceEEeeeecCCCccccccccee-----ecCCC-----HHHHHHHHHHHHHHHhhhhcchhH
Q 005580 523 TMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA-----IIDLD-----PIETEKFAESVASIAIKRERNSSF 592 (690)
Q Consensus 523 a~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~c~~~L~-----~~~l~-----~~e~~~l~~~i~~~~~~~~~~~~~ 592 (690)
|+. +|++|...|+.||.+||. .++.++|..++..+. .+... ...|..+++.+.+ ...++|
T Consensus 831 Al~----lf~eM~~~Gi~Pd~~T~~-~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-----~~~~A~ 900 (1060)
T PLN03218 831 ALM----VYRETISAGTLPTMEVLS-QVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE-----YDPRAF 900 (1060)
T ss_pred HHH----HHHHHHHCCCCCCHHHHH-HHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc-----ChHHHH
Confidence 777 999999999999999994 444777766654321 11111 1244555554321 124689
Q ss_pred HHHHHHHhhcCCccEE
Q 005580 593 QKFQKWLDYYGPFEAV 608 (690)
Q Consensus 593 ~~F~~~l~~~~pyd~v 608 (690)
..|++++..+..+++.
T Consensus 901 ~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 901 SLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 9999999888655554
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.3e-49 Score=464.32 Aligned_cols=348 Identities=11% Similarity=0.058 Sum_probs=269.5
Q ss_pred hhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 005580 148 SKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY 227 (690)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~ 227 (690)
..++|..+. .+.+.++..+|.++|++|...+ +..||..+|+++|.+|++.++++.|.+++..|++.|+.||..
T Consensus 87 ~~~~~~~i~--~l~~~g~~~~Al~~f~~m~~~~-----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 87 GVSLCSQIE--KLVACGRHREALELFEILEAGC-----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred ceeHHHHHH--HHHcCCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 345666666 7778999999999999995432 356788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHH
Q 005580 228 HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTF 307 (690)
Q Consensus 228 tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf 307 (690)
+||.||++|+ ++|++++|.++|+ +|.+ +|+++||+||++ |++.|++++|.++|
T Consensus 160 ~~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~----~~~~t~n~li~~------~~~~g~~~~A~~lf 212 (697)
T PLN03081 160 MMNRVLLMHV----------KCGMLIDARRLFD-------EMPE----RNLASWGTIIGG------LVDAGNYREAFALF 212 (697)
T ss_pred HHHHHHHHHh----------cCCCHHHHHHHHh-------cCCC----CCeeeHHHHHHH------HHHCcCHHHHHHHH
Confidence 9999999999 9999999999995 5654 389999999999 99999999999999
Q ss_pred HHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC
Q 005580 308 NEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (690)
Q Consensus 308 ~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (690)
++|.+.|+.||..||+ .++.+++ ..+..++..+.+.|+.||..+||+ ||++|++.|++++|.++|++|..
T Consensus 213 ~~M~~~g~~p~~~t~~--~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~-Li~~y~k~g~~~~A~~vf~~m~~-- 287 (697)
T PLN03081 213 REMWEDGSDAEPRTFV--VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA-LIDMYSKCGDIEDARCVFDGMPE-- 287 (697)
T ss_pred HHHHHhCCCCChhhHH--HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH-HHHHHHHCCCHHHHHHHHHhCCC--
Confidence 9999999999999998 7777766 334456666777777777777777 77777777777777777777753
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 005580 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (690)
Q Consensus 383 ~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (690)
+|++|||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+||+
T Consensus 288 --~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 288 --KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred --CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 577777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHHcchHHHHhhcccchhhHHHHHhhhcCCccccccccCCCc
Q 005580 463 LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGK 541 (690)
Q Consensus 463 Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~M~~~g~~p 541 (690)
||++|+++|++++|.++|++|.+. ...+|++ |.++++.|.. ++|++ +|++|...|+.|
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~~----d~~t~n~lI~~y~~~G~~-------------~~A~~----lf~~M~~~g~~P 424 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRG-------------TKAVE----MFERMIAEGVAP 424 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHcCCH-------------HHHHH----HHHHHHHhCCCC
Confidence 777777777777777777776532 2236666 6666666654 33334 666666666666
Q ss_pred ceEEeeeecCCCccccc
Q 005580 542 WIVSHTTVGGDALCKCC 558 (690)
Q Consensus 542 ~~vt~t~vl~~g~C~~c 558 (690)
|.+|| +.++.+.|..+
T Consensus 425 d~~T~-~~ll~a~~~~g 440 (697)
T PLN03081 425 NHVTF-LAVLSACRYSG 440 (697)
T ss_pred CHHHH-HHHHHHHhcCC
Confidence 66666 44445444444
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.3e-50 Score=479.54 Aligned_cols=415 Identities=12% Similarity=0.020 Sum_probs=329.8
Q ss_pred chhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 005580 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (690)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~ 226 (690)
...+||..+. .+.+.++.++|.++|++|... |+.||.+||+++|++|++.+++..+.+++..|.+.|+.||.
T Consensus 151 d~~~~n~li~--~~~~~g~~~~A~~~f~~M~~~------g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (857)
T PLN03077 151 DLFSWNVLVG--GYAKAGYFDEALCLYHRMLWA------GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222 (857)
T ss_pred CeeEHHHHHH--HHHhCCCHHHHHHHHHHHHHc------CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc
Confidence 4445666555 566666666666666666443 34444466666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHH
Q 005580 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (690)
Q Consensus 227 ~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (690)
.+||+||.+|+ ++|++++|..+|+ +|... |.++||+||.+ |++.|++++|.++
T Consensus 223 ~~~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----d~~s~n~li~~------~~~~g~~~eAl~l 275 (857)
T PLN03077 223 DVVNALITMYV----------KCGDVVSARLVFD-------RMPRR----DCISWNAMISG------YFENGECLEGLEL 275 (857)
T ss_pred chHhHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CcchhHHHHHH------HHhCCCHHHHHHH
Confidence 66777777777 9999999999996 55432 88999999999 9999999999999
Q ss_pred HHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC
Q 005580 307 FNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (690)
Q Consensus 307 f~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (690)
|++|.+.|+.||.+||+ .++.+++ +.+..++..|...|+.||+.+||+ ||++|++.|++++|.++|++|.
T Consensus 276 f~~M~~~g~~Pd~~ty~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~-Li~~y~k~g~~~~A~~vf~~m~-- 350 (857)
T PLN03077 276 FFTMRELSVDPDLMTIT--SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS-LIQMYLSLGSWGEAEKVFSRME-- 350 (857)
T ss_pred HHHHHHcCCCCChhHHH--HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH-HHHHHHhcCCHHHHHHHHhhCC--
Confidence 99999999999999999 9999998 456779999999999999999999 9999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 005580 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (690)
Q Consensus 382 g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (690)
.||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+||
T Consensus 351 --~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 351 --TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred --CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHHcchHHHHhhccc-------------c--------hhhH
Q 005580 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKK-------------W--------NESL 519 (690)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~~~~~~a~~~~-------------~--------~~~~ 519 (690)
+||++|++.|++++|.++|++|.+. ...+|+. |.+++..+...+|...- + ..+.
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence 9999999999999999999999754 2337877 88888877765554210 0 1123
Q ss_pred HHHHhhhcCCccccccccCCCcceEEeeeecCCCcccccccceeecCC--CHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 005580 520 IKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDL--DPIETEKFAESVASIAIKRERNSSFQKFQK 597 (690)
Q Consensus 520 v~ea~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~c~~~L~~~~l--~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~ 597 (690)
++++.+ ++..|...|+.|+..++ +.+++++|+++....+...+ .+.+...|...|..++..+...+.++.|++
T Consensus 505 l~~~~~----i~~~~~~~g~~~~~~~~-naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 505 LMCGKE----IHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred HHHhHH----HHHHHHHhCCCccceec-hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333 55666677777777777 77778888777533211100 022334556666777788888888999999
Q ss_pred HHhhcCCccEEEecc
Q 005580 598 WLDYYGPFEAVVDAA 612 (690)
Q Consensus 598 ~l~~~~pyd~viDGa 612 (690)
|.+.+..+|.+.-..
T Consensus 580 M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 580 MVESGVNPDEVTFIS 594 (857)
T ss_pred HHHcCCCCCcccHHH
Confidence 998876666555433
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-49 Score=463.23 Aligned_cols=346 Identities=12% Similarity=0.032 Sum_probs=225.1
Q ss_pred ccchhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 005580 145 IKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (690)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p 224 (690)
.+...++|..+. .+.+.++.++|.++|++|. .||+++||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 155 ~~~~~~~n~Li~--~y~k~g~~~~A~~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 155 EPDQYMMNRVLL--MHVKCGMLIDARRLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred CcchHHHHHHHH--HHhcCCCHHHHHHHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 345556666665 6667777777777777771 2455777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccchhhccccccccccccccCCChhhH
Q 005580 225 GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL 303 (690)
Q Consensus 225 d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A 303 (690)
|..||+++|.+|+ +.|..+.+..++. .+.+. |+. |.++||+||++ |++.|++++|
T Consensus 223 ~~~t~~~ll~a~~----------~~~~~~~~~~l~~-------~~~~~-g~~~d~~~~n~Li~~------y~k~g~~~~A 278 (697)
T PLN03081 223 EPRTFVVMLRASA----------GLGSARAGQQLHC-------CVLKT-GVVGDTFVSCALIDM------YSKCGDIEDA 278 (697)
T ss_pred ChhhHHHHHHHHh----------cCCcHHHHHHHHH-------HHHHh-CCCccceeHHHHHHH------HHHCCCHHHH
Confidence 7777777777777 5666666666663 33333 555 66667777777 7777777777
Q ss_pred HHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHH
Q 005580 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (690)
Q Consensus 304 ~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M 378 (690)
.++|++|. .||.++|| .+|.||+ ++|..+|.+|...|+.||.+||++ +|.+|++.|++++|.+++.+|
T Consensus 279 ~~vf~~m~----~~~~vt~n--~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~-ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 279 RCVFDGMP----EKTTVAWN--SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI-MIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHhCC----CCChhHHH--HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhccchHHHHHHHHHH
Confidence 77776664 35666666 6666666 345556666666667777777766 667777777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 005580 379 CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (690)
Q Consensus 379 ~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ 458 (690)
.+.|+.||..+||+||++|++.|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 766666777777777777777777777777776664 2566677777777777777777777777776667777777
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHH-HHHHHcchHHHHhhcccchhhHHHHHhhhcCCcccccc
Q 005580 459 ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLG 535 (690)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~M~ 535 (690)
||+++|.+|++.|.+++|.++|+.|.+. .++.|+ +|+. |..+++.|... +|.+ ++++|
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~-~g~~p~~~~y~~li~~l~r~G~~~-------------eA~~----~~~~~- 488 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSEN-HRIKPRAMHYACMIELLGREGLLD-------------EAYA----MIRRA- 488 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHh-cCCCCCccchHhHHHHHHhcCCHH-------------HHHH----HHHHC-
Confidence 7777777777777777777777776542 144454 5655 55665555433 3333 44333
Q ss_pred ccCCCcceEEeeeecCCCcccccc
Q 005580 536 WLGKGKWIVSHTTVGGDALCKCCG 559 (690)
Q Consensus 536 ~~g~~p~~vt~t~vl~~g~C~~c~ 559 (690)
++.|+.++| +.++.+.|..+.
T Consensus 489 --~~~p~~~~~-~~Ll~a~~~~g~ 509 (697)
T PLN03081 489 --PFKPTVNMW-AALLTACRIHKN 509 (697)
T ss_pred --CCCCCHHHH-HHHHHHHHHcCC
Confidence 356666666 555555555444
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.8e-49 Score=471.93 Aligned_cols=474 Identities=11% Similarity=0.011 Sum_probs=371.8
Q ss_pred hhccCcccccCCccCCcCCccccccchhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHH
Q 005580 122 AFLKSREMSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC 201 (690)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~ 201 (690)
.+++.|.+..+...+..+ ..+...+||..+. .+.+.++.++|.++|++|.+.| +.||.+||+++|.+|
T Consensus 231 ~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~--~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRM----PRRDCISWNAMIS--GYFENGECLEGLELFFTMRELS------VDPDLMTITSVISAC 298 (857)
T ss_pred HHhcCCCHHHHHHHHhcC----CCCCcchhHHHHH--HHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHH
Confidence 344445544444443332 2345567888887 7888999999999999996654 455559999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchh
Q 005580 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (690)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~ty 281 (690)
++.|+++.|.+++..|.+.|+.||..+||+||.+|+ ++|++++|.++|+ +|.. +|.++|
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~----------k~g~~~~A~~vf~-------~m~~----~d~~s~ 357 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL----------SLGSWGEAEKVFS-------RMET----KDAVSW 357 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH----------hcCCHHHHHHHHh-------hCCC----CCeeeH
Confidence 999999999999999999999999999999999999 9999999999995 5543 388999
Q ss_pred hccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcCCCCChhhhHH
Q 005580 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADE 356 (690)
Q Consensus 282 n~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~ 356 (690)
|+||.+ |++.|++++|.++|++|.+.|+.||.+||+ .++.+++ +.+..++..|.+.|+.||..+||+
T Consensus 358 n~li~~------~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 358 TAMISG------YEKNGLPDKALETYALMEQDNVSPDEITIA--SVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred HHHHHH------HHhCCCHHHHHHHHHHHHHhCCCCCceeHH--HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 999999 999999999999999999999999999999 9999988 566779999999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 005580 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (690)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g 436 (690)
||++|++.|++++|.++|++|.+ ||.++||+||.+|++.|+.++|+++|++|.. ++.||.+||+++|.+|++.|
T Consensus 430 -Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 430 -LIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred -HHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 99999999999999999999975 6889999999999999999999999999986 59999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHHcchHHHHhhcccc
Q 005580 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKW 515 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~~~~~~a~~~~~ 515 (690)
+++.+.+++..|.+.|+.||..++|+||++|+++|++++|.++|++| . ++..+|++ |.++++.|..
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~---~d~~s~n~lI~~~~~~G~~-------- 570 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--E---KDVVSWNILLTGYVAHGKG-------- 570 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--C---CChhhHHHHHHHHHHcCCH--------
Confidence 99999999999999999999999999999999999999999999987 2 23448888 8888777764
Q ss_pred hhhHHHHHhhhcCCccccccccCCCcceEEeeeecCCCcccccccc-----------eeecCCCHHHHHHHHHHHHHHHh
Q 005580 516 NESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEK-----------LAIIDLDPIETEKFAESVASIAI 584 (690)
Q Consensus 516 ~~~~v~ea~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~c~~~-----------L~~~~l~~~e~~~l~~~i~~~~~ 584 (690)
++|++ +|++|...|+.||.+|| +.++.+.|..+... ...+.++.+.|..+++.+.+.+.
T Consensus 571 -----~~A~~----lf~~M~~~g~~Pd~~T~-~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 571 -----SMAVE----LFNRMVESGVNPDEVTF-ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred -----HHHHH----HHHHHHHcCCCCCcccH-HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 45556 89999999999999999 66666655555321 12344555677777777766555
Q ss_pred hhhcchhHHHHHHHHhhcCCccEEEeccccccccCCCCChhHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCChhHH
Q 005580 585 KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNR 664 (690)
Q Consensus 585 ~~~~~~~~~~F~~~l~~~~pyd~viDGaNvg~~~~~~~~~~~l~~vv~~l~~~~~~~~~~lvvL~~~~~~~~~~~~~~~~ 664 (690)
..++ .+.|++| ...+|.+++++-++.|..++ +.+.-+.+.+.+.+..|..-...++|.+-+.. ..+..++.
T Consensus 641 ~~eA---~~~~~~m---~~~pd~~~~~aLl~ac~~~~-~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~--~g~~~~a~ 711 (857)
T PLN03077 641 LTEA---YNFINKM---PITPDPAVWGALLNACRIHR-HVELGELAAQHIFELDPNSVGYYILLCNLYAD--AGKWDEVA 711 (857)
T ss_pred HHHH---HHHHHHC---CCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH--CCChHHHH
Confidence 4443 3333333 13577778877766554332 33333445555555444333334444443332 22355666
Q ss_pred HHHHHHHhCC
Q 005580 665 ALIEKWKNAD 674 (690)
Q Consensus 665 ~l~~~w~~~~ 674 (690)
++.+.+++.|
T Consensus 712 ~vr~~M~~~g 721 (857)
T PLN03077 712 RVRKTMRENG 721 (857)
T ss_pred HHHHHHHHcC
Confidence 6666666665
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.71 E-value=1.8e-15 Score=165.35 Aligned_cols=276 Identities=15% Similarity=0.042 Sum_probs=211.5
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG---QYHYNVLLYLCSS 238 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd---~~tyn~Ll~~~~~ 238 (690)
..++.++|...|.++.+.. +.+..+|..+...+.+.|++++|+.+++.+...+-.++ ...+..|...|.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~- 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL- 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-
Confidence 5578889999999996532 12346899999999999999999999999987643322 356788888888
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCC
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (690)
+.|+.++|..+|. ++.+. ...+..+++.++.. +++.|++++|.++|+.|.+.+-.++
T Consensus 119 ---------~~g~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 119 ---------KAGLLDRAEELFL-------QLVDE-GDFAEGALQQLLEI------YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred ---------HCCCHHHHHHHHH-------HHHcC-CcchHHHHHHHHHH------HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 8899999999995 55442 22266779999999 9999999999999999987653222
Q ss_pred ccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005580 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (690)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~ 398 (690)
.... ...|.. +...+.+.|++++|...|+++.+.. +.+...+..+...|.
T Consensus 176 ~~~~----------------------------~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 225 (389)
T PRK11788 176 RVEI----------------------------AHFYCE-LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLAL 225 (389)
T ss_pred hHHH----------------------------HHHHHH-HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHH
Confidence 1100 011223 6667888999999999999988753 234567888889999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005580 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (690)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (690)
+.|++++|.++|+++...+-.....+++.++.+|++.|+.++|...++++.+. .|+...+..+...+.+.|++++|..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999887642222467888999999999999999999998875 4777777889999999999999999
Q ss_pred HHHHHHHcCCCCChhHHHH-HHHHH
Q 005580 479 LLHKLRTSVRKVSPSTADV-IAKWF 502 (690)
Q Consensus 479 ll~~M~~~~~g~~p~t~~~-I~~~~ 502 (690)
+|+++.+. .+...++.. +..++
T Consensus 304 ~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 304 LLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHh--CcCHHHHHHHHHHhh
Confidence 99998877 444445554 44443
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.61 E-value=6.1e-14 Score=153.33 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=213.8
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~ 238 (690)
.....++.++|..+++.+...+ ..........+..+...|.+.|++++|+.+|+++.+. -+++..+++.+...+.
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~- 152 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRP---DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQ- 152 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH-
Confidence 3457889999999999996532 1100112357889999999999999999999999865 3456789999999999
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccCCCCc-c----chhhccccccccccccccCCChhhHHHHHHHHHHc
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN-N----GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d-~----~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (690)
+.|++++|.+.+. .+... +-.+ . ..|..+... +.+.|++++|...|+++.+.
T Consensus 153 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 153 ---------QEKDWQKAIDVAE-------RLEKL-GGDSLRVEIAHFYCELAQQ------ALARGDLDAARALLKKALAA 209 (389)
T ss_pred ---------HhchHHHHHHHHH-------HHHHh-cCCcchHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHHHhH
Confidence 8899999999995 44432 2111 1 124556666 88899999999999999865
Q ss_pred CCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005580 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (690)
Q Consensus 314 g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~L 393 (690)
. |+.. ..+.. +...|.+.|++++|.++|+++...+......+++.+
T Consensus 210 ~--p~~~-------------------------------~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 210 D--PQCV-------------------------------RASIL-LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred C--cCCH-------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 2 3321 12223 778899999999999999999976433335678999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---c
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE---A 470 (690)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~---~ 470 (690)
+.+|++.|++++|.+.++.+.+. .|+...+..+...+.+.|+.++|..+++++.+. .|+..+++.++..++. .
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCC
Confidence 99999999999999999999876 478888899999999999999999999998875 6999999999999886 5
Q ss_pred CChHHHHHHHHHHHHcCCCCChh
Q 005580 471 GKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 471 g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
|+.+++..+|++|.++...+.|+
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCCC
Confidence 68999999999999984445554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.45 E-value=2.4e-11 Score=146.03 Aligned_cols=283 Identities=12% Similarity=-0.014 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~ 271 (690)
..|..+..++.+.|++++|+..|+++.... +.+...+..+...+. +.|+.++|...|. ++..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~~~~ 663 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----------VMKNYAKAITSLK-------RALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 444455555555555555555555544322 123334444444444 4455555555553 2222
Q ss_pred cCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcC
Q 005580 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKD 346 (690)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g 346 (690)
. .-.+..+|..+... +...|++++|..+++.|.+... ++...+. .+...+. ..|...+..+...
T Consensus 664 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~g~~~~A~~~~~~~~~~- 732 (899)
T TIGR02917 664 L-KPDNTEAQIGLAQL------LLAAKRTESAKKIAKSLQKQHP-KAALGFE--LEGDLYLRQKDYPAAIQAYRKALKR- 732 (899)
T ss_pred c-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCc-CChHHHH--HHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 1 11134445555555 6666666666666666655431 1222222 2222221 3344444444443
Q ss_pred CCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHH
Q 005580 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (690)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (690)
.|+..++.. +...+.+.|+.++|.+.++++.+.. +.+...++.+...|.+.|+.++|.++|+++.+.. .++..+++
T Consensus 733 -~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 733 -APSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred -CCCchHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 233344444 5666667777777777777666543 3456666777777777777777777777766553 34556667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHH-HHHHHHHcc
Q 005580 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTA-DVIAKWFNS 504 (690)
Q Consensus 427 ~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~-~p~t~-~~I~~~~~~ 504 (690)
.+...+.+.|+ .+|..+++.+.+.. .-+..++..+...+...|++++|..+|+++.+. ++ .|.++ +....+++.
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHc
Confidence 77777777777 66777777665542 124445556666677777777777777777776 33 33344 336666666
Q ss_pred hHHHHhh
Q 005580 505 KEAARLG 511 (690)
Q Consensus 505 ~~~~~a~ 511 (690)
|+..+|.
T Consensus 885 g~~~~A~ 891 (899)
T TIGR02917 885 GRKAEAR 891 (899)
T ss_pred CCHHHHH
Confidence 6554443
No 10
>PF13041 PPR_2: PPR repeat family
Probab=99.43 E-value=2.1e-13 Score=103.03 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 005580 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (690)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (690)
||++|||+||++|++.|++++|+++|++|++.|+.||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444444444444444444444444444444444444444444444444
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.42 E-value=5e-11 Score=143.25 Aligned_cols=262 Identities=10% Similarity=-0.046 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~ 271 (690)
.+|+.+...+.+.|++++|.+.|+++.... +.+...+..+...+. ..|+.++|...|. ++..
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~----------~~g~~~~A~~~~~-------~~~~ 527 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDI----------QEGNPDDAIQRFE-------KVLT 527 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHH
Confidence 344445555555555555555555544321 122333333444444 4455555555552 2222
Q ss_pred cCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcC
Q 005580 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKD 346 (690)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g 346 (690)
. ...+..+++.+... +.+.|+.++|..+|.++....- .+...+. .+...+. ..|..++..+...
T Consensus 528 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~- 596 (899)
T TIGR02917 528 I-DPKNLRAILALAGL------YLRTGNEEEAVAWLEKAAELNP-QEIEPAL--ALAQYYLGKGQLKKALAILNEAADA- 596 (899)
T ss_pred h-CcCcHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCc-cchhHHH--HHHHHHHHCCCHHHHHHHHHHHHHc-
Confidence 1 11133344444444 5555555555555555544321 1111111 2222222 2233333333321
Q ss_pred CCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHH
Q 005580 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (690)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (690)
...+...|.. +...|.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|..+++.+.+.. ..+..++.
T Consensus 597 ~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 597 APDSPEAWLM-LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 1223334444 5555555566666666666555432 1234455555555556666666666665555431 22345555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 427 ~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+...++..|+.++|.++++.+.+.+ .++...+..+...+.+.|++++|...|+++...
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 55556666666666666666655543 234455555555566666666666666666555
No 12
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=5.2e-13 Score=100.83 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005580 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (690)
Q Consensus 189 p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~ 237 (690)
||+++||++|++|++.|++++|+++|++|++.|++||.+||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999999999999999999999999999999998
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=4.4e-11 Score=123.89 Aligned_cols=290 Identities=13% Similarity=0.058 Sum_probs=220.4
Q ss_pred CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC---------Cc----------cc
Q 005580 187 DRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG---------VV----------KP 246 (690)
Q Consensus 187 ~~p~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~---------~~----------~~ 246 (690)
..|+ +.+=|.|+.. ...|.+.++.-+|+.|+..|+..+...--.|+..-|-.... .+ .-
T Consensus 111 ~~~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~s 189 (625)
T KOG4422|consen 111 ADPLQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSS 189 (625)
T ss_pred CCchhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccc
Confidence 3454 3455666654 56799999999999999999998888888887766532110 00 01
Q ss_pred CCCCchhhHHhHhhhhccccccccccCCCC-ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchh
Q 005580 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNS 325 (690)
Q Consensus 247 ~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~ 325 (690)
=|.|.+.+ -+|. -.+ ..-||.+||.| +|+--..+.|.++++|-.....+-+..+||
T Consensus 190 WK~G~vAd--L~~E-------------~~PKT~et~s~mI~G------l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN-- 246 (625)
T KOG4422|consen 190 WKSGAVAD--LLFE-------------TLPKTDETVSIMIAG------LCKFSSLERARELYKEHRAAKGKVYREAFN-- 246 (625)
T ss_pred cccccHHH--HHHh-------------hcCCCchhHHHHHHH------HHHHHhHHHHHHHHHHHHHhhheeeHHhhh--
Confidence 13343333 3332 222 56789999999 999999999999999999998999999999
Q ss_pred hhhhccc-cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005580 326 QLLDGRS-NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400 (690)
Q Consensus 326 ~li~g~~-~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~ 400 (690)
.+|.+-. ...+.+..+|....+.||..|+|+ ++.+..+.|+++. |.+++.+|++-|+.|...+|--+|.-+++.
T Consensus 247 ~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNa-lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 247 GLIGASSYSVGKKLVAEMISQKMTPNLFTFNA-LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hhhhHHHhhccHHHHHHHHHhhcCCchHhHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 8887766 556789999999999999999999 9999999997764 568899999999999999999999999999
Q ss_pred CChHH-HHHHHHHHHH----CCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC---HHHHHHHH
Q 005580 401 GDGDM-AFDMVKRMKS----LGINP----RLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE---EPELEALL 464 (690)
Q Consensus 401 g~~~~-A~~l~~~M~~----~g~~P----d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~----gv~pd---~~ty~~Li 464 (690)
++..+ |..++.++.. +-++| |..-|.+.++.|.+..+.+.|.++..-.... -+.|+ ..-|.-+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 88854 4444444442 33444 4456788899999999999999998776543 13333 23467788
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 005580 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (690)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~ 501 (690)
...|.....+.-+..++.|.-+..+|.+-+...|...
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 8889999999999999999988666666555443333
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=3.3e-09 Score=110.21 Aligned_cols=231 Identities=10% Similarity=0.015 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~ 271 (690)
-||.+||.++||--..+.|.++|.+-.....+.+..+||.||.+-+ +....++. .||..
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--------------~~~~K~Lv-------~EMis 266 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS--------------YSVGKKLV-------AEMIS 266 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--------------hhccHHHH-------HHHHH
Confidence 7999999999999999999999999998888999999999998866 22335566 37777
Q ss_pred cCCCC-ccchhhccccccccccccccCCChhhH----HHHHHHHHHcCCCCCccccchhhhhhccccccCC---------
Q 005580 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL----DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG--------- 337 (690)
Q Consensus 272 ~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A----~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~--------- 337 (690)
. .+. |..|+|+++.. ..+.|+++.| .+++.||++.|+.|...+|. .+|.-+|.+...
T Consensus 267 q-km~Pnl~TfNalL~c------~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh--~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 267 Q-KMTPNLFTFNALLSC------AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYH--LIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred h-hcCCchHhHHHHHHH------HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHH--HHHHHhcccCCchhhhHHHHH
Confidence 6 666 99999999999 9999988664 67889999999999999998 788877733221
Q ss_pred -CchhhhhcCCCCChhhhHHH---HHHHHHhccCHHHHHHHHHHHHhC----CCCCCH---HHHHHHHHHHHhcCChHHH
Q 005580 338 -PDDQSRKKDWSIDNQDADEI---RLSEDAKKYAFQRGFEIYEKMCLD----EVPMNE---ASLTAVGRMAMSMGDGDMA 406 (690)
Q Consensus 338 -~~~~m~~~g~~pd~~tyn~~---lI~~~~k~g~~~~A~~lf~~M~~~----g~~pd~---~tyn~LI~~~~~~g~~~~A 406 (690)
+.+++..+.++|-..+.|-. -++-|.+..+.+-|.++..-++.. -+.|+. +=|.-+....|.....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544433332 344555666666666665554421 122332 2345566666777777777
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005580 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (690)
Q Consensus 407 ~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~g 452 (690)
...++.|.-.-+-|+..+-..++.+.--.|.++-.-++|.+|...|
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 7777777666566666777777777766777766666666665554
No 15
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.07 E-value=8.4e-10 Score=123.40 Aligned_cols=254 Identities=14% Similarity=0.062 Sum_probs=163.6
Q ss_pred HHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCC
Q 005580 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250 (690)
Q Consensus 171 ~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g 250 (690)
.++-.|...|+.|++ +||..+|.-||..|+.+.|- +|.-|+-...+.+...|+.++.+.. .++
T Consensus 11 nfla~~e~~gi~PnR------vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~----------~An 73 (1088)
T KOG4318|consen 11 NFLALHEISGILPNR------VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK----------EAN 73 (1088)
T ss_pred hHHHHHHHhcCCCch------hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc----------ccc
Confidence 455667777777777 99999999999999999999 9999998888889999999999887 444
Q ss_pred chhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHH-------cCCCCCccccc
Q 005580 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN-------LGQFSNGHMKL 323 (690)
Q Consensus 251 ~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~-------~g~~Pd~~ty~ 323 (690)
+.+.+.+. -.-||+.|+.+ |...|++.--..+=+.|.. .|+-.-..-+-
T Consensus 74 d~Enpkep------------------~aDtyt~Ll~a------yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl 129 (1088)
T KOG4318|consen 74 DAENPKEP------------------LADTYTNLLKA------YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFL 129 (1088)
T ss_pred cccCCCCC------------------chhHHHHHHHH------HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHH
Confidence 44433322 23579999999 9999987552222122322 11110000000
Q ss_pred hhhhhhccc---ccc---------CCCchhhhhcCC-CCChhhhHHHHHHHHHhcc-CHHHHHHHHHHHHhCCC-CCCHH
Q 005580 324 NSQLLDGRS---NLE---------RGPDDQSRKKDW-SIDNQDADEIRLSEDAKKY-AFQRGFEIYEKMCLDEV-PMNEA 388 (690)
Q Consensus 324 ~~~li~g~~---~~a---------~~~~~~m~~~g~-~pd~~tyn~~lI~~~~k~g-~~~~A~~lf~~M~~~g~-~pd~~ 388 (690)
..++++- ..+ +.+++...+.+. .|-..-++...+ .+-++- ......++.+ |.+.+. .|+..
T Consensus 130 --~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v-fLrqnv~~ntpvekLl~-~cksl~e~~~s~ 205 (1088)
T KOG4318|consen 130 --MKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV-FLRQNVVDNTPVEKLLN-MCKSLVEAPTSE 205 (1088)
T ss_pred --hhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH-HHHHhccCCchHHHHHH-HHHHhhcCCChH
Confidence 0111110 000 111222222211 111111111011 000110 1112222222 233322 59999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (690)
+|.+++++-..+|+++.|..++.+|++.|+..+..-|-+||-+ .++...+..+..-|.+.|+.|+..||.-.+..+.
T Consensus 206 ~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 206 TLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 9999999999999999999999999999999899888998877 8889999999999999999999999998887776
Q ss_pred HcCC
Q 005580 469 EAGK 472 (690)
Q Consensus 469 ~~g~ 472 (690)
++|.
T Consensus 283 ~N~~ 286 (1088)
T KOG4318|consen 283 SNGQ 286 (1088)
T ss_pred cchh
Confidence 6554
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.94 E-value=3.7e-07 Score=106.56 Aligned_cols=290 Identities=9% Similarity=-0.098 Sum_probs=180.3
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~ 239 (690)
....|+..+|..+++........ .|+ ..| .+..++...|++++|++.|+++.... +-+...+..+-..+.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~-----~~~-~l~-~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~-- 121 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKN-----GRD-LLR-RWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL-- 121 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCC-----chh-HHH-HHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH--
Confidence 34778888899988887554221 122 334 44455566888888988888887642 223445555556666
Q ss_pred ccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCc
Q 005580 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (690)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~ 319 (690)
..|+.++|...+. +.... .-.+...|..+... +...|++++|...++.+....-.+..
T Consensus 122 --------~~g~~~~Ai~~l~-------~Al~l-~P~~~~a~~~la~~------l~~~g~~~eA~~~~~~~~~~~P~~~~ 179 (656)
T PRK15174 122 --------KSKQYATVADLAE-------QAWLA-FSGNSQIFALHLRT------LVLMDKELQAISLARTQAQEVPPRGD 179 (656)
T ss_pred --------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHCCChHHHHHHHHHHHHhCCCCHH
Confidence 6788888888885 33321 11144557777777 88888888888888877654322211
Q ss_pred cccch-hhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005580 320 HMKLN-SQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (690)
Q Consensus 320 ~ty~~-~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~ 398 (690)
..+.. ..+..|-..+|...+..+....-.++...+.. +...+.+.|+.++|...|++..... +-+...+..+-..|.
T Consensus 180 a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~-l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~ 257 (656)
T PRK15174 180 MIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGL-AVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYY 257 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH-HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 11110 00111111334444444433221122222222 4567778888888888888877654 234666777778888
Q ss_pred hcCChHH----HHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 005580 399 SMGDGDM----AFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (690)
Q Consensus 399 ~~g~~~~----A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (690)
..|++++ |...|+...+. .| +...+..+-..+.+.|+.++|...+++..+.. .-+...+..+-..|.+.|++
T Consensus 258 ~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 258 QSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred HcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 8888775 67777776654 34 34567777778888888888888888877643 12344566677777888888
Q ss_pred HHHHHHHHHHHHc
Q 005580 474 DRVYYLLHKLRTS 486 (690)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (690)
++|...|+++...
T Consensus 335 ~eA~~~l~~al~~ 347 (656)
T PRK15174 335 TAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887766
No 17
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=98.89 E-value=2.4e-10 Score=108.02 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=64.0
Q ss_pred cEEEeccccccc--cCCCCChhHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCChhHHHHHHHHHhCCceecCCCCC
Q 005580 606 EAVVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS 683 (690)
Q Consensus 606 d~viDGaNvg~~--~~~~~~~~~l~~vv~~l~~~~~~~~~~lvvL~~~~~~~~~~~~~~~~~l~~~w~~~~~ly~tp~~s 683 (690)
-+||||+|||++ ++..|+..+|..++++|.+ .|..+++|++..+........+...+++++|.++|.++.||+++
T Consensus 4 ~VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~ 80 (155)
T PF11977_consen 4 PVVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGS 80 (155)
T ss_dssp -EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEE
T ss_pred EEEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCC
Confidence 389999999874 3335899999999999999 68889999998885433344667778999999999999999999
Q ss_pred C--------CCcCCC
Q 005580 684 N--------DDCYKV 690 (690)
Q Consensus 684 n--------DD~ywl 690 (690)
+ ||||||
T Consensus 81 ~~g~~~~~ydD~~il 95 (155)
T PF11977_consen 81 NYGSRSRNYDDRYIL 95 (155)
T ss_dssp ETTEEEEB-HHHHHH
T ss_pred CCCCcccccchHHHH
Confidence 8 999996
No 18
>PF12854 PPR_1: PPR repeat
Probab=98.85 E-value=3e-09 Score=72.92 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (690)
Q Consensus 382 g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M 413 (690)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.83 E-value=1.4e-06 Score=101.81 Aligned_cols=282 Identities=7% Similarity=-0.047 Sum_probs=181.9
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~ 241 (690)
..++.++|...|+.+.... |+ +...|..+-..+.+.|++++|+..|+++.... +.+...+..+...+.
T Consensus 88 ~~g~~~~A~~~l~~~l~~~--P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~---- 155 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVN--VC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLV---- 155 (656)
T ss_pred hcCCHHHHHHHHHHHHHhC--CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH----
Confidence 4677777777777774321 11 22456666667777777777777777776531 223455666666666
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (690)
..|+.++|...+. .+... .-.+...+..+ .. +...|++++|..+++.+....-.++...
T Consensus 156 ------~~g~~~eA~~~~~-------~~~~~-~P~~~~a~~~~-~~------l~~~g~~~eA~~~~~~~l~~~~~~~~~~ 214 (656)
T PRK15174 156 ------LMDKELQAISLAR-------TQAQE-VPPRGDMIATC-LS------FLNKSRLPEDHDLARALLPFFALERQES 214 (656)
T ss_pred ------HCCChHHHHHHHH-------HHHHh-CCCCHHHHHHH-HH------HHHcCCHHHHHHHHHHHHhcCCCcchhH
Confidence 6677777777663 22211 11122222221 23 5566777777777777655532222222
Q ss_pred cchhhhhhccc-----cccCCCchhhhhcCCCCC-hhhhHHHHHHHHHhccCHHH----HHHHHHHHHhCCCCCCHHHHH
Q 005580 322 KLNSQLLDGRS-----NLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASLT 391 (690)
Q Consensus 322 y~~~~li~g~~-----~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~g~~pd~~tyn 391 (690)
+. .+...+. .+|...+...... .|+ ...+.. +-..|.+.|+.++ |...|++..... +.+...+.
T Consensus 215 ~~--~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~-Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~ 288 (656)
T PRK15174 215 AG--LAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRS-LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVT 288 (656)
T ss_pred HH--HHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 21 1111111 3344444444432 233 334444 7788899999886 899999988753 23567899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHH
Q 005580 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSVE 469 (690)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~t-y~~Li~~~~~ 469 (690)
.+...+.+.|++++|...+++.... .|+. ..+..+-..+.+.|+.++|...|+.+.+. .|+... +..+-.++..
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHH
Confidence 9999999999999999999998875 3543 45667778899999999999999998875 455433 3334567899
Q ss_pred cCChHHHHHHHHHHHHc
Q 005580 470 AGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 470 ~g~~~~A~~ll~~M~~~ 486 (690)
.|+.++|...|++..+.
T Consensus 365 ~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 365 AGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998877
No 20
>PF12854 PPR_1: PPR repeat
Probab=98.81 E-value=4e-09 Score=72.29 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=19.0
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 417 g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M 448 (690)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55556666666666666666666666655555
No 21
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.70 E-value=3.3e-07 Score=103.16 Aligned_cols=243 Identities=13% Similarity=0.056 Sum_probs=160.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccchhhcccccccc
Q 005580 212 RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMID 290 (690)
Q Consensus 212 ~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~ 290 (690)
.++-.|...|+.||.+||.+||.-|| ..|+++.|- +|. -|..+ .++ +...++.++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----------~~gdieaat-if~-------fm~~k-sLpv~e~vf~~lv~s--- 68 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----------TKGDIEAAT-IFP-------FMEIK-SLPVREGVFRGLVAS--- 68 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----------ccCCCcccc-chh-------hhhcc-cccccchhHHHHHhc---
Confidence 35667889999999999999999999 788888888 884 23333 555 77889999999
Q ss_pred ccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCC-Cchhhhh-------------------------
Q 005580 291 KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG-PDDQSRK------------------------- 344 (690)
Q Consensus 291 ~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~-~~~~m~~------------------------- 344 (690)
....++.+.+. .|-.-||. .|..+|...+.- .|+...+
T Consensus 69 ---h~~And~Enpk-----------ep~aDtyt--~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~ 132 (1088)
T KOG4318|consen 69 ---HKEANDAENPK-----------EPLADTYT--NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKI 132 (1088)
T ss_pred ---ccccccccCCC-----------CCchhHHH--HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhc
Confidence 99999888876 56667777 666666522111 0111100
Q ss_pred ---cCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005580 345 ---KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (690)
Q Consensus 345 ---~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (690)
.+.-||..+ +|--..-.|.++.+.+++..|.... ..|-.+ .|+-+.... .-..++....+..--.|
T Consensus 133 ~c~p~~lpda~n----~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~ 202 (1088)
T KOG4318|consen 133 HCCPHSLPDAEN----AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAP 202 (1088)
T ss_pred ccCcccchhHHH----HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCC
Confidence 111122211 2222333334444444443332211 112111 133322222 22334444333331259
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHH-
Q 005580 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV- 497 (690)
Q Consensus 421 d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~- 497 (690)
+..+|.+++++-.-+|+++.|..++.+|.+.|+..+..-|-.||-+ .+...-+..+++.|.+. |+.|+ |+..
T Consensus 203 ~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~ady 277 (1088)
T KOG4318|consen 203 TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQADY 277 (1088)
T ss_pred ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHHH
Confidence 9999999999999999999999999999999999999999999877 88888999999999999 77777 7766
Q ss_pred HHHHHcchHH
Q 005580 498 IAKWFNSKEA 507 (690)
Q Consensus 498 I~~~~~~~~~ 507 (690)
+...+..+..
T Consensus 278 vip~l~N~~t 287 (1088)
T KOG4318|consen 278 VIPQLSNGQT 287 (1088)
T ss_pred HHhhhcchhh
Confidence 7777775543
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.66 E-value=7.5e-06 Score=95.36 Aligned_cols=254 Identities=11% Similarity=0.044 Sum_probs=187.9
Q ss_pred cCcchHhHHHHHHHhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccc
Q 005580 164 TNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (690)
Q Consensus 164 ~~~~~A~~vf~~m~~~g~~~~~~~~p-~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd-~~tyn~Ll~~~~~~~~ 241 (690)
++.++|.+.|+...+.+ ...| +...|+.+-..+...|++++|+..|++.... .|+ ...|..+-..+.
T Consensus 308 ~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~---- 376 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNL---- 376 (615)
T ss_pred hhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH----
Confidence 56778999999986543 1223 3467888888888999999999999998864 455 456777777777
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (690)
..|+.++|...|. +..+. .-.+...|..+-.. +...|++++|...|++..+. .|+..
T Consensus 377 ------~~g~~~eA~~~~~-------~al~~-~p~~~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l--~P~~~- 433 (615)
T TIGR00990 377 ------ELGDPDKAEEDFD-------KALKL-NSEDPDIYYHRAQL------HFIKGEFAQAGKDYQKSIDL--DPDFI- 433 (615)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHc--CccCH-
Confidence 7789999999995 33322 22245567777777 88999999999999987764 23321
Q ss_pred cchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005580 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (690)
Q Consensus 322 y~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g 401 (690)
..|.. +-..+.+.|++++|...|++..... +-+...|+.+-..+...|
T Consensus 434 ------------------------------~~~~~-la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 434 ------------------------------FSHIQ-LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred ------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 12223 6677889999999999999988642 335678999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCc--c------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 005580 402 DGDMAFDMVKRMKSLGINPRL--R------SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (690)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~--~------ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (690)
++++|.+.|+...... |+. . .++..+..+-..|++++|.+++++..... .-+...+..|...+.+.|++
T Consensus 482 ~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 9999999999877642 321 1 12222233444699999999999987654 22445788999999999999
Q ss_pred HHHHHHHHHHHHc
Q 005580 474 DRVYYLLHKLRTS 486 (690)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (690)
++|..+|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.60 E-value=2.2e-07 Score=97.04 Aligned_cols=255 Identities=16% Similarity=0.110 Sum_probs=104.4
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~ty-n~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~ 240 (690)
+.++.++|+++++.-... ..+|+...| ..+-..+-..++.+.|++.++++...+-. +...|..++.. .
T Consensus 20 ~~~~~~~Al~~L~~~~~~------~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~--- 88 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQK------IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L--- 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc-ccccccccccc-c---
Confidence 678999999999654221 112322344 44444555678999999999999876533 45566677766 4
Q ss_pred cCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCcc
Q 005580 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (690)
Q Consensus 241 ~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (690)
..++.++|.+++. +..+. ..+...+..++.. +.+.++++++..++++.....-.|+
T Consensus 89 -------~~~~~~~A~~~~~-------~~~~~--~~~~~~l~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~-- 144 (280)
T PF13429_consen 89 -------QDGDPEEALKLAE-------KAYER--DGDPRYLLSALQL------YYRLGDYDEAEELLEKLEELPAAPD-- 144 (280)
T ss_dssp ---------------------------------------------H-------HHHTT-HHHHHHHHHHHHH-T---T--
T ss_pred -------ccccccccccccc-------ccccc--ccccchhhHHHHH------HHHHhHHHHHHHHHHHHHhccCCCC--
Confidence 4677888888873 22221 1244456677777 8888999999999988765321121
Q ss_pred ccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 005580 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMS 399 (690)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~~~~~ 399 (690)
+...|.. +-..+.+.|+.++|.++|++..+. .| |....+.++..+..
T Consensus 145 -----------------------------~~~~~~~-~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 145 -----------------------------SARFWLA-LAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLID 192 (280)
T ss_dssp ------------------------------HHHHHH-HHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCT
T ss_pred -----------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 1222223 556778899999999999998875 35 47788899999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005580 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (690)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l 479 (690)
.|+.+++.++++...+.. ..|...+..+-.+|...|+.++|...|++..... .-|..+...+-+++...|+.++|.++
T Consensus 193 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------
T ss_pred CCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 999999999998887764 4566777888999999999999999999987642 33788888889999999999999998
Q ss_pred HHHHHH
Q 005580 480 LHKLRT 485 (690)
Q Consensus 480 l~~M~~ 485 (690)
.++.-.
T Consensus 271 ~~~~~~ 276 (280)
T PF13429_consen 271 RRQALR 276 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 776543
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.55 E-value=4.2e-05 Score=75.86 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=92.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g 436 (690)
+...|...|++++|.+.|++....... .+...+..+...+...|++++|.+.+.+..... ..+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 556677788888888888887764322 234556667777888888888888888876652 123456777778888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.++|.+.+++.... ...+...+..+...+...|+.++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888888888888766 3445667777778888888888888887777653
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.52 E-value=5.1e-05 Score=90.51 Aligned_cols=286 Identities=9% Similarity=-0.004 Sum_probs=161.1
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~ 241 (690)
..++..+|.++++...+. .+.+...+..+...+.+.|++++|+..+++.... -+.+.. +..+-.++.
T Consensus 61 ~~g~~~~A~~~~~~al~~-------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~---- 127 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSL-------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK---- 127 (765)
T ss_pred HcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH----
Confidence 556666666666665322 0112234455556666666666666666666644 122333 555544555
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (690)
..|+.++|+..+. +.... .-.+...+..+... +...+..++|.+.++.... .|+...
T Consensus 128 ------~~g~~~~Al~~l~-------~al~~-~P~~~~~~~~la~~------l~~~~~~e~Al~~l~~~~~---~p~~~~ 184 (765)
T PRK10049 128 ------RAGRHWDELRAMT-------QALPR-APQTQQYPTEYVQA------LRNNRLSAPALGAIDDANL---TPAEKR 184 (765)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCChHHHHHHHHhCCC---CHHHHH
Confidence 5566666666663 22221 11122233334444 5555666666665553332 222100
Q ss_pred cc----hhhhhhcc-------------ccccCCCchhhhhc-CCCCChh-hhHHHH---HHHHHhccCHHHHHHHHHHHH
Q 005580 322 KL----NSQLLDGR-------------SNLERGPDDQSRKK-DWSIDNQ-DADEIR---LSEDAKKYAFQRGFEIYEKMC 379 (690)
Q Consensus 322 y~----~~~li~g~-------------~~~a~~~~~~m~~~-g~~pd~~-tyn~~l---I~~~~k~g~~~~A~~lf~~M~ 379 (690)
.. ...++... .+.|...+..+... .-.|+.. .+.... +..+...|++++|...|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00 00000000 01122223333321 1222221 111111 234457789999999999999
Q ss_pred hCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHHHHhCC-
Q 005580 380 LDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEEHMLEHG- 452 (690)
Q Consensus 380 ~~g~~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~g- 452 (690)
+.+.. |+..- -.+...|...|++++|..+|+++.... |. ...+..+..++...|+.++|.++++.+.+..
T Consensus 265 ~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 265 AEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred ccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 87632 44322 224678999999999999999987542 32 2345667778899999999999999988652
Q ss_pred ----------CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 453 ----------VYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 453 ----------v~pd~---~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
-.|+. ..+..+...+...|+.++|+++|+++...
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12342 34556777888999999999999999887
No 26
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.51 E-value=1.5e-05 Score=87.53 Aligned_cols=276 Identities=8% Similarity=-0.014 Sum_probs=182.0
Q ss_pred hcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcc
Q 005580 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVL--LYLCSSAA 240 (690)
Q Consensus 163 ~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~L--l~~~~~~~ 240 (690)
.|+++.|.+....-.+. ...|. ..|-..-.+..+.|+++.|...|.++.+ ..|+...+-.+ ...+.
T Consensus 97 eGd~~~A~k~l~~~~~~------~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l--- 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH------AEQPV-VNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQL--- 164 (398)
T ss_pred CCCHHHHHHHHHHHHhc------ccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH---
Confidence 48888999887775221 12233 4454445555899999999999999975 45665544422 33444
Q ss_pred cCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCcc
Q 005580 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (690)
Q Consensus 241 ~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (690)
..|+.+.|...++ ++.+. .-.+......+... |.+.|++++|.+++..+.+.+..++..
T Consensus 165 -------~~g~~~~Al~~l~-------~~~~~-~P~~~~al~ll~~~------~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 -------ARNENHAARHGVD-------KLLEV-APRHPEVLRLAEQA------YIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred -------HCCCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 6799999999995 44443 22255667788888 999999999999999999987654331
Q ss_pred -------ccchhhhhhcc-ccccCC----CchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHH
Q 005580 321 -------MKLNSQLLDGR-SNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (690)
Q Consensus 321 -------ty~~~~li~g~-~~~a~~----~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ 388 (690)
+|. .++.-. ...... ++..+... ...+...... +...+...|+.++|.+++++..+. .||..
T Consensus 224 ~~~l~~~a~~--~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~-~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 224 RAMLEQQAWI--GLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVA-MAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred HHHHHHHHHH--HHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 111 111100 010000 11111111 1112223333 677888888999999888888774 44442
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (690)
-.++.+....++.+++.+..+...+. .||.. .+.++=..|.+.+++++|.+.|+...+. .|+..+|..|-..+
T Consensus 298 --l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~ 371 (398)
T PRK10747 298 --LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADAL 371 (398)
T ss_pred --HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 12344445568888888888887765 35544 4566667778888899999998888764 58888888888888
Q ss_pred HHcCChHHHHHHHHHH
Q 005580 468 VEAGKGDRVYYLLHKL 483 (690)
Q Consensus 468 ~~~g~~~~A~~ll~~M 483 (690)
.+.|+.++|.+++++=
T Consensus 372 ~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 372 DRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8899988888887764
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.49 E-value=9.2e-07 Score=92.36 Aligned_cols=251 Identities=15% Similarity=0.079 Sum_probs=107.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC
Q 005580 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD 276 (690)
Q Consensus 197 lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~ 276 (690)
+-..+.+.|++++|++++++-....-+|+...|-.++.-++. ..++.+.|...+. ++... +-.
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~---------~~~~~~~A~~ay~-------~l~~~-~~~ 76 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW---------SLGDYDEAIEAYE-------KLLAS-DKA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc---------ccccccccccccc-------ccccc-ccc
Confidence 355677889999999999765544435666666666555553 5677888888884 44432 222
Q ss_pred ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHH
Q 005580 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (690)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (690)
+...|..++. +...+++++|.+++.+.-++. ++.. .+..
T Consensus 77 ~~~~~~~l~~-------l~~~~~~~~A~~~~~~~~~~~--~~~~--------------------------------~l~~ 115 (280)
T PF13429_consen 77 NPQDYERLIQ-------LLQDGDPEEALKLAEKAYERD--GDPR--------------------------------YLLS 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc-------ccccccccccccccccccccc--cccc--------------------------------hhhH
Confidence 2223444333 347788888888776654432 1211 1223
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHh
Q 005580 357 IRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (690)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~k 434 (690)
++..+.+.++.+++.+++++..... ..+|...|..+...+.+.|+.++|.+++++..+. .|+ ....+.++..+..
T Consensus 116 -~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 116 -ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLID 192 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCT
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 6677889999999999999987543 4578888999999999999999999999998876 464 6678889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHH-HHHHHcchHHHHhh
Q 005580 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARLG 511 (690)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~-~p~t~~~-I~~~~~~~~~~~a~ 511 (690)
.|+.+++.++++...+.. ..|...+..+-.+|...|+.++|...|++.... .+ +|.+... -..+...|...+|.
T Consensus 193 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred CCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 999999999998887764 556667889999999999999999999999886 44 3333322 45555556554444
No 28
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.43 E-value=5.4e-05 Score=88.23 Aligned_cols=300 Identities=11% Similarity=-0.006 Sum_probs=183.3
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCS 237 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p-d~~tyn~Ll~~~~ 237 (690)
..-+.++.++|.+.|+.... ..|+...|..+-.+|.+.|++++|++.++..... .| +...|..+-.+|.
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~--------~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIE--------CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHh--------cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 34467899999999999753 2345578888999999999999999999998864 34 4556777777777
Q ss_pred hcccCCcccCCCCchhhHHhHhhhhccc-------c----------------ccccccCCCCccchhhc-----------
Q 005580 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMN-------S----------------TELGDSRDMDNNGQLDY----------- 283 (690)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~vf~~~~~~-------s----------------~em~~~~gv~d~~tyn~----------- 283 (690)
..|++++|..-|...... . .+..+. .-.+...+..
T Consensus 206 ----------~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 274 (615)
T TIGR00990 206 ----------GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILET-KPENLPSVTFVGNYLQSFRPK 274 (615)
T ss_pred ----------HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHccCC
Confidence 778888887654211000 0 000000 0000000000
Q ss_pred ---------------cccccc----cccccccCCChhhHHHHHHHHHHcC-CCCCcc-ccc-hhh--hhhccccccCCCc
Q 005580 284 ---------------GSSPMI----DKLESNSSYRFDDLDSTFNEKENLG-QFSNGH-MKL-NSQ--LLDGRSNLERGPD 339 (690)
Q Consensus 284 ---------------LI~~~~----~~~~~~~~g~~~~A~~lf~eM~~~g-~~Pd~~-ty~-~~~--li~g~~~~a~~~~ 339 (690)
+..+.. ...+....+.+++|.+.|++....+ ..|+.. .|. .+. ...|--+.|...+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 000000 0000112356788888888887765 234322 222 000 0111113344444
Q ss_pred hhhhhcCCCCChh-hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005580 340 DQSRKKDWSIDNQ-DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (690)
Q Consensus 340 ~~m~~~g~~pd~~-tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (690)
..... +.|+.. .|.. +-..+...|++++|...|++..+.. +-+..+|..+...+...|++++|...|++..+.
T Consensus 355 ~kal~--l~P~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-- 428 (615)
T TIGR00990 355 SKSIE--LDPRVTQSYIK-RASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-- 428 (615)
T ss_pred HHHHH--cCCCcHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 44332 245433 4444 6667777888888888888776643 234667777778888888888888888877655
Q ss_pred CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 419 NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 419 ~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.| +...|..+-..+.+.|+.++|...|++..+.. .-+...|+.+-..+...|++++|...|++-...
T Consensus 429 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 24 34556666677778888888888888776532 224667777778888888888888888887665
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.41 E-value=4.8e-05 Score=94.89 Aligned_cols=294 Identities=11% Similarity=-0.002 Sum_probs=174.3
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~ 239 (690)
..+.++.++|.+.|++..+.. | .+...+..+-..+.+.|++++|++.|++..+.. +.+...+..+...+...
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~--P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD--N-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 447789999999999986531 1 234677778899999999999999999998642 22333444343333210
Q ss_pred ccC--------------------------------CcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccc
Q 005580 240 AVG--------------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSP 287 (690)
Q Consensus 240 ~~~--------------------------------~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~ 287 (690)
... ...+...|+.++|...|. +.... .-.+...+..+-..
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-------~Al~~-~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-------QRLAL-DPGSVWLTYRLAQD 504 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH
Confidence 000 000114578888888884 33321 11144445556666
Q ss_pred cccccccccCCChhhHHHHHHHHHHcCCCCCccc--cchhhhhhccc--cccCCCchhhhhcCCCCChhh---------h
Q 005580 288 MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM--KLNSQLLDGRS--NLERGPDDQSRKKDWSIDNQD---------A 354 (690)
Q Consensus 288 ~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t--y~~~~li~g~~--~~a~~~~~~m~~~g~~pd~~t---------y 354 (690)
|.+.|++++|...|++..+. .|+... |..+.+..... ..|...+..+......++... +
T Consensus 505 ------~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 505 ------LRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred ------HHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 88999999999999998764 343322 11111111000 122222222221111111111 1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh
Q 005580 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (690)
Q Consensus 355 n~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k 434 (690)
-. +...+...|+.++|.++++. .+++...+..|-..+.+.|+.++|.+.|++..+.. .-+...+..+...|..
T Consensus 577 l~-~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 577 LE-TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA 649 (1157)
T ss_pred HH-HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 11 34556677777777777762 23444556667777777788888888777776652 2245667777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 435 NGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|+.++|.++++...+. .| +..++..+-..+...|+.++|..+++++...
T Consensus 650 ~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 650 QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 78888888777766543 23 3444555666677777788888877777665
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.40 E-value=4.8e-05 Score=84.02 Aligned_cols=283 Identities=9% Similarity=-0.025 Sum_probs=178.4
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY--HYNVLLYLCSS 238 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~--tyn~Ll~~~~~ 238 (690)
..|+...|.+.+....+. .|+ ...|-..-.+..+.|+.+.|.+.|.+..+.- |+.. .--+....+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l- 164 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL- 164 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH-
Confidence 568999999999876322 232 1333444566778899999999999987543 4432 2232344455
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCC
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (690)
..|+.+.|...+. ++.+. .-.+...+..+... +.+.|++++|.+++..+.+.++.+.
T Consensus 165 ---------~~~~~~~Al~~l~-------~l~~~-~P~~~~~l~ll~~~------~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 165 ---------AQNELHAARHGVD-------KLLEM-APRHKEVLKLAEEA------YIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred ---------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 6789999999995 55553 32255567777778 9999999999999999999875433
Q ss_pred ccccc------hhhhhhccccccCCCchhhhhcCC---CCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH
Q 005580 319 GHMKL------NSQLLDGRSNLERGPDDQSRKKDW---SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (690)
Q Consensus 319 ~~ty~------~~~li~g~~~~a~~~~~~m~~~g~---~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t 389 (690)
..... .+.+-.+-...+...+..+...-- ..+...+-. +...+...|+.++|.+++++..+.. ||...
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~-~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~ 298 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIA-LAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA 298 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHH-HHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence 32211 000111111111112222221110 013334444 6778888888888888888888753 33321
Q ss_pred H-HHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCcc--h-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005580 390 L-TAVGRMA--MSMGDGDMAFDMVKRMKSLGINPRLR--S-YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (690)
Q Consensus 390 y-n~LI~~~--~~~g~~~~A~~l~~~M~~~g~~Pd~~--t-y~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (690)
. -.++..+ ...++.+.+.+.++...+. .|+-. . ..++=..|.+.|++++|.+.|+........||...+..+
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 1 0123322 3356777777777766544 35444 3 335556677888888888888854454557888888888
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 005580 464 LRVSVEAGKGDRVYYLLHKL 483 (690)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M 483 (690)
-..+.+.|+.++|.+++++-
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 88888888888888888764
No 31
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.32 E-value=0.00029 Score=84.12 Aligned_cols=290 Identities=10% Similarity=-0.035 Sum_probs=191.0
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSS 238 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd-~~tyn~Ll~~~~~ 238 (690)
+.+.++.++|...++...+. .| .+.. +..+-.++.+.|+.++|+..++++... .|+ ...+..+..++.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~--~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~- 161 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG--AP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALR- 161 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-
Confidence 34789999999999998543 12 2234 888888899999999999999999875 343 444455666665
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccC----CCC----ccchhhccccccccccccccCCCh---hhHHHHH
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR----DMD----NNGQLDYGSSPMIDKLESNSSYRF---DDLDSTF 307 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~----gv~----d~~tyn~LI~~~~~~~~~~~~g~~---~~A~~lf 307 (690)
..|..+.|...+. ...... ++. .......+... ....+++ ++|.+.+
T Consensus 162 ---------~~~~~e~Al~~l~-------~~~~~p~~~~~l~~~~~~~~~r~~~~~~------~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 162 ---------NNRLSAPALGAID-------DANLTPAEKRDLEADAAAELVRLSFMPT------RSEKERYAIADRALAQY 219 (765)
T ss_pred ---------HCCChHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHhhcccc------cChhHHHHHHHHHHHHH
Confidence 5677888888874 111110 000 00111112222 3344455 7788888
Q ss_pred HHHHHc-CCCCCccc-cch------hh-hhhccccccCCCchhhhhcCCC-CCh-hhhHHHHHHHHHhccCHHHHHHHHH
Q 005580 308 NEKENL-GQFSNGHM-KLN------SQ-LLDGRSNLERGPDDQSRKKDWS-IDN-QDADEIRLSEDAKKYAFQRGFEIYE 376 (690)
Q Consensus 308 ~eM~~~-g~~Pd~~t-y~~------~~-li~g~~~~a~~~~~~m~~~g~~-pd~-~tyn~~lI~~~~k~g~~~~A~~lf~ 376 (690)
+.+.+. ...|+... +.. +. +..+-...|...|..+...+-. |+- ..+ +-..|...|++++|..+|+
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~---la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW---VASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH---HHHHHHhcCCcHHHHHHHH
Confidence 888765 33343321 110 01 1122225566677777765421 332 222 3467889999999999999
Q ss_pred HHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCC---cchHHHHHHHHHhcCChH
Q 005580 377 KMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----------INPR---LRSYGPALSVFCNNGDVD 439 (690)
Q Consensus 377 ~M~~~g~~p---d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-----------~~Pd---~~ty~~lI~~~~k~g~~~ 439 (690)
+........ ....+..|..++...|++++|.++++.+.... -.|+ ...+..+...+...|+.+
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 987643111 13456667778899999999999999988652 1123 123456677888899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+|.++++++... ..-+...+..+...+...|++++|++.+++....
T Consensus 377 eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 377 QAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 999999998765 2446778888888899999999999999998877
No 32
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.24 E-value=1.3e-06 Score=59.77 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd 421 (690)
|||+||++|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.22 E-value=0.00039 Score=86.91 Aligned_cols=253 Identities=10% Similarity=0.046 Sum_probs=176.9
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~ 239 (690)
....++.++|.+.|++..+.. |+ +...+..+-..|.+.|++++|+..|+++.... +-+...+-.+.-.+.
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~--P~-----~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~-- 540 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALD--PG-----SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS-- 540 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH--
Confidence 346789999999999985431 21 23567778889999999999999999988642 112333222222233
Q ss_pred ccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccc----------hhhccccccccccccccCCChhhHHHHHHH
Q 005580 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG----------QLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (690)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~----------tyn~LI~~~~~~~~~~~~g~~~~A~~lf~e 309 (690)
..|+.++|...+. .+... ...+.+ .+-.+... +...|+.++|..+++.
T Consensus 541 --------~~~~~~~Al~~l~-------~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~------l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 541 --------GSDRDRAALAHLN-------TLPRA-QWNSNIQELAQRLQSDQVLETANR------LRDSGKEAEAEALLRQ 598 (1157)
T ss_pred --------hCCCHHHHHHHHH-------hCCch-hcChhHHHHHHHHhhhHHHHHHHH------HHHCCCHHHHHHHHHh
Confidence 5688899998885 22111 000000 01112233 6678888888888761
Q ss_pred HHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH
Q 005580 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (690)
Q Consensus 310 M~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t 389 (690)
.|+.. ..+.. +-..|.+.|+.++|.+.|++..+.. +.+...
T Consensus 599 ------~p~~~-------------------------------~~~~~-La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a 639 (1157)
T PRK11447 599 ------QPPST-------------------------------RIDLT-LADWAQQRGDYAAARAAYQRVLTRE-PGNADA 639 (1157)
T ss_pred ------CCCCc-------------------------------hHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 23221 11223 6677889999999999999998863 336788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CC---CHHHHHHH
Q 005580 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YP---EEPELEAL 463 (690)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv--~p---d~~ty~~L 463 (690)
+..+...|...|+.++|.+.++...+. .|+ ...+..+-..+...|+.++|.++++.+....- .| +...+..+
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~ 717 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDA 717 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHH
Confidence 999999999999999999999977654 344 34556677788899999999999999876532 22 23466666
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 005580 464 LRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~ 485 (690)
-..+.+.|+.++|...|++-..
T Consensus 718 a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 718 ARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7888999999999999998864
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.20 E-value=7.9e-05 Score=81.47 Aligned_cols=279 Identities=12% Similarity=0.023 Sum_probs=156.0
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~ 239 (690)
+.+.|+.++|+.+++.|++.. |+ .+..|-.+-.++...|+.+.|...|.+..+ +.|+.+-..+-+.-+-+
T Consensus 126 ~kerg~~~~al~~y~~aiel~--p~-----fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk- 195 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELK--PK-----FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK- 195 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcC--ch-----hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH-
Confidence 348899999999999996532 21 246899999999999999999999998875 45776665555544443
Q ss_pred ccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCc
Q 005580 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (690)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~ 319 (690)
..|++++|..-+. ..++.... =.+.|+-|=.. +-..|++-.|..-|++-... .|+-
T Consensus 196 --------a~Grl~ea~~cYl------kAi~~qp~--fAiawsnLg~~------f~~~Gei~~aiq~y~eAvkl--dP~f 251 (966)
T KOG4626|consen 196 --------AEGRLEEAKACYL------KAIETQPC--FAIAWSNLGCV------FNAQGEIWLAIQHYEEAVKL--DPNF 251 (966)
T ss_pred --------hhcccchhHHHHH------HHHhhCCc--eeeeehhcchH------HhhcchHHHHHHHHHHhhcC--CCcc
Confidence 3477888877774 22222211 23557777666 77788888888888876653 2321
Q ss_pred c-c-cchhhhhhccccccCCCchhh-----hhcCCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHH
Q 005580 320 H-M-KLNSQLLDGRSNLERGPDDQS-----RKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASL 390 (690)
Q Consensus 320 ~-t-y~~~~li~g~~~~a~~~~~~m-----~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~ty 390 (690)
- . +|.|.+. .+.+.|+.. ..-.+.|+- +.|.+ |-..|-..|.+|-|...|++-.+. .|+ ...|
T Consensus 252 ~dAYiNLGnV~-----ke~~~~d~Avs~Y~rAl~lrpn~A~a~gN-la~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay 323 (966)
T KOG4626|consen 252 LDAYINLGNVY-----KEARIFDRAVSCYLRALNLRPNHAVAHGN-LACIYYEQGLLDLAIDTYKRALEL--QPNFPDAY 323 (966)
T ss_pred hHHHhhHHHHH-----HHHhcchHHHHHHHHHHhcCCcchhhccc-eEEEEeccccHHHHHHHHHHHHhc--CCCchHHH
Confidence 1 0 1111110 011111111 111223332 22333 334455556666666666655542 333 2456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 005580 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSV 468 (690)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~ 468 (690)
|.|..++-..|++.+|.+.+...... .|+ ..+.+.|-..|...|.+++|..+|....+ +.|+ ...+|-|-..|-
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYK 399 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHH
Confidence 66666666666666666666554433 122 23445555555556666666655555433 2232 223444555555
Q ss_pred HcCChHHHHHHHHHHH
Q 005580 469 EAGKGDRVYYLLHKLR 484 (690)
Q Consensus 469 ~~g~~~~A~~ll~~M~ 484 (690)
+.|++++|..-+++-.
T Consensus 400 qqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEAL 415 (966)
T ss_pred hcccHHHHHHHHHHHH
Confidence 5555555555555443
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.20 E-value=0.00025 Score=72.37 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=39.5
Q ss_pred ccccchhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHc
Q 005580 143 IGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLR-VELDMCSKRGDVMGAIRLYDKAQRE 220 (690)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn-~lI~~~~k~g~~~~A~~lf~~M~~~ 220 (690)
+....+..+|-.+. .+.++|.++|-+|.+. .|..+--+ +|=+.|-+.|.++.|+.++..+.++
T Consensus 35 lsr~Yv~GlNfLLs-------~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s 98 (389)
T COG2956 35 LSRDYVKGLNFLLS-------NQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES 98 (389)
T ss_pred ccHHHHhHHHHHhh-------cCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 34445556666655 4677888888888541 22222222 3445566778888888888887754
No 36
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.18 E-value=2.7e-06 Score=58.17 Aligned_cols=35 Identities=29% Similarity=0.598 Sum_probs=31.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 005580 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (690)
Q Consensus 423 ~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~ 457 (690)
+|||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
No 37
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.14 E-value=0.00049 Score=83.24 Aligned_cols=230 Identities=8% Similarity=-0.039 Sum_probs=168.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccc
Q 005580 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (690)
Q Consensus 190 ~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em 269 (690)
+...|..+-.++.. |+..+|+..|.+.... .|+......+...+. ..|+.++|...|. ++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~----------~~Gr~eeAi~~~r-------ka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY----------QVEDYATALAAWQ-------KI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 34566666666655 8999999988877754 366554333344444 6799999999995 33
Q ss_pred cccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCC
Q 005580 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (690)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~p 349 (690)
... -++...+..+-.. +.+.|++++|...|++..+.. |+....
T Consensus 536 ~~~--~p~~~a~~~la~a------ll~~Gd~~eA~~~l~qAL~l~--P~~~~l--------------------------- 578 (987)
T PRK09782 536 SLH--DMSNEDLLAAANT------AQAAGNGAARDRWLQQAEQRG--LGDNAL--------------------------- 578 (987)
T ss_pred hcc--CCCcHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC--CccHHH---------------------------
Confidence 321 1122234444445 778999999999999887653 332111
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHH
Q 005580 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPA 428 (690)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~l 428 (690)
+.. +...+.+.|++++|...|++..+. .|+...|..+-..+.+.|+.++|...+++.... .|+. ..++.+
T Consensus 579 ----~~~-La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nL 649 (987)
T PRK09782 579 ----YWW-LHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAAL 649 (987)
T ss_pred ----HHH-HHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 111 223334569999999999999874 467889999999999999999999999998776 4554 456666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 429 I~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
-..+...|+.++|..+++...+.. .-+...+..+-.++...|++++|...|++..+.
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 678999999999999999987742 225677888889999999999999999999877
No 38
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=3.8e-06 Score=57.29 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p 224 (690)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999999999999999998
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.10 E-value=0.00088 Score=79.47 Aligned_cols=286 Identities=10% Similarity=-0.045 Sum_probs=168.3
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~ 241 (690)
..++.++|.++|+.+.+.. |+ +...+..++..+...++.++|++.+.++... .|+...|-.++..+.
T Consensus 114 ~~gdyd~Aiely~kaL~~d--P~-----n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~---- 180 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD--PT-----NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNR---- 180 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC--CC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHH----
Confidence 4567777777777774431 11 1234446667777777777777777777643 455555533333332
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (690)
..++..+|+..+. ++.+. .-.+.-.+.-++.. +.+.|-...|.++..+ .|+.++
T Consensus 181 ------~~~~~~~AL~~~e-------kll~~-~P~n~e~~~~~~~~------l~~~~~~~~a~~l~~~------~p~~f~ 234 (822)
T PRK14574 181 ------ATDRNYDALQASS-------EAVRL-APTSEEVLKNHLEI------LQRNRIVEPALRLAKE------NPNLVS 234 (822)
T ss_pred ------hcchHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCcHHHHHHHHh------CccccC
Confidence 2233434666663 44442 11122223333344 4555555555544432 233332
Q ss_pred cc---------hhhhh-hccc------------cccCCCchhhhh-cC-CCCChhhhHHHH---HHHHHhccCHHHHHHH
Q 005580 322 KL---------NSQLL-DGRS------------NLERGPDDQSRK-KD-WSIDNQDADEIR---LSEDAKKYAFQRGFEI 374 (690)
Q Consensus 322 y~---------~~~li-~g~~------------~~a~~~~~~m~~-~g-~~pd~~tyn~~l---I~~~~k~g~~~~A~~l 374 (690)
-. ....+ .+.. +.|..-.+.+.. .+ .++...-|-.+. +-++.+.|++.++.+.
T Consensus 235 ~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~ 314 (822)
T PRK14574 235 AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKE 314 (822)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22 00001 0100 011111222221 11 122222232323 3567788999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 005580 375 YEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (690)
Q Consensus 375 f~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-----~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~ 449 (690)
|+.|...|......+--++.++|...+++++|..+++...... ..++......|..++...+++++|..+++++.
T Consensus 315 y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~ 394 (822)
T PRK14574 315 YEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYS 394 (822)
T ss_pred HHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999998876555688899999999999999999999986542 22344446788999999999999999999998
Q ss_pred hCC-------------CCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 450 EHG-------------VYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 450 ~~g-------------v~pd~~ty-~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.- --||-..+ ..++..+...|++.+|+++++++...
T Consensus 395 ~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 395 EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 731 11333333 34566678899999999999999877
No 40
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.06 E-value=0.00071 Score=66.94 Aligned_cols=157 Identities=12% Similarity=0.036 Sum_probs=125.7
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
+...|++++|...|++..+.. |+. ...+.. +...|...|++++|.+
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~--p~~-------------------------------~~~~~~-la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD--PDD-------------------------------YLAYLA-LALYYQQLGELEKAED 86 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--ccc-------------------------------HHHHHH-HHHHHHHcCCHHHHHH
Confidence 888999999999999886542 322 122333 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005580 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (690)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~g 452 (690)
.|++..+... .+...+..+...+...|++++|.+.+++.......| +...+..+-..+...|+.++|...+++..+..
T Consensus 87 ~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 87 SFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999887642 356778888999999999999999999988753222 34566777788899999999999999987753
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..+...+..+...+...|++++|..++++....
T Consensus 166 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 166 -PQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 224667888999999999999999999998876
No 41
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=6.7e-06 Score=56.04 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (690)
|||++|++|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.04 E-value=0.0012 Score=78.38 Aligned_cols=284 Identities=9% Similarity=-0.051 Sum_probs=192.3
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---H
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ--FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL---Y 234 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~--~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll---~ 234 (690)
..+.|+.+.|+..|++..+. .|+. ..+ .++..+...|+.++|+..+++.. .|+...+..++ .
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ 110 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR 110 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence 34778899999999998432 2321 233 88888889999999999999987 44333333333 3
Q ss_pred HHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcC
Q 005580 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (690)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (690)
.+. ..|+.++|.++|. ++.+. .-.|.-.+..++.. +...++.++|++.++.....
T Consensus 111 ly~----------~~gdyd~Aiely~-------kaL~~-dP~n~~~l~gLa~~------y~~~~q~~eAl~~l~~l~~~- 165 (822)
T PRK14574 111 AYR----------NEKRWDQALALWQ-------SSLKK-DPTNPDLISGMIMT------QADAGRGGVVLKQATELAER- 165 (822)
T ss_pred HHH----------HcCCHHHHHHHHH-------HHHhh-CCCCHHHHHHHHHH------HhhcCCHHHHHHHHHHhccc-
Confidence 455 6799999999994 55553 22244445566666 88999999999999998765
Q ss_pred CCCCccccchhhhhhcc---c--cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHH-------------
Q 005580 315 QFSNGHMKLNSQLLDGR---S--NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE------------- 376 (690)
Q Consensus 315 ~~Pd~~ty~~~~li~g~---~--~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~------------- 376 (690)
.|+...|- .+..-+ . ..|...+.++... .|+...+..-++..+.+.|-...|.++..
T Consensus 166 -dp~~~~~l--~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 166 -DPTVQNYM--TLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred -CcchHHHH--HHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 56644442 221111 1 2355566666664 57655554446667677665555544433
Q ss_pred -----------------------------------HHHh-CCCCCCH-HHH-HHH---HHHHHhcCChHHHHHHHHHHHH
Q 005580 377 -----------------------------------KMCL-DEVPMNE-ASL-TAV---GRMAMSMGDGDMAFDMVKRMKS 415 (690)
Q Consensus 377 -----------------------------------~M~~-~g~~pd~-~ty-n~L---I~~~~~~g~~~~A~~l~~~M~~ 415 (690)
.+.. -+-.|.. .-| .+. +-++.+.|+..++.+.++.|+.
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 2222 1111221 111 222 3367788999999999999998
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 416 ~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|...-.++=-.+-++|...+..++|..++....... ..++......|.-+|...+++++|..+++++.+.
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 8865344467788899999999999999999986543 2345555788999999999999999999999984
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.96 E-value=0.00078 Score=74.11 Aligned_cols=219 Identities=8% Similarity=-0.034 Sum_probs=156.5
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHH
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-------YHYNV 231 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~-------~tyn~ 231 (690)
.....++.+.|.+.++.+.+.. |+ +...+..+...|.+.|++++|++++..+.+.+..++. .+|..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~--P~-----~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA--PR-----HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CC-----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3446789999999999985432 11 2367889999999999999999999999988765322 12333
Q ss_pred HHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccchhhccccccccccccccCCChhhHHHHHHHH
Q 005580 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (690)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (690)
++.... +....+....++. ++.+ ..+ +.-..-.+... +...|+.++|.+++++.
T Consensus 235 l~~~~~----------~~~~~~~l~~~w~-------~lp~--~~~~~~~~~~~~A~~------l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 235 LMDQAM----------ADQGSEGLKRWWK-------NQSR--KTRHQVALQVAMAEH------LIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHHHH----------HhcCHHHHHHHHH-------hCCH--HHhCCHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 333322 1122233333332 2211 112 33345556666 88899999999999887
Q ss_pred HHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 005580 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (690)
Q Consensus 311 ~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty 390 (690)
.+. .||.. .+++.+.+..++.+++.+..+...+.. +-|...+
T Consensus 290 l~~--~~~~~-----------------------------------l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~ 331 (398)
T PRK10747 290 LKR--QYDER-----------------------------------LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLW 331 (398)
T ss_pred Hhc--CCCHH-----------------------------------HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHH
Confidence 663 23221 114455566799999999999998763 2355668
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 005580 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (690)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~ 449 (690)
.++-..|.+.+++++|.+.|+...+. .|+..+|..+-..+.+.|+.++|.+++++-.
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88999999999999999999998875 6999999999999999999999999998753
No 44
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.91 E-value=0.0019 Score=78.22 Aligned_cols=216 Identities=11% Similarity=0.028 Sum_probs=153.8
Q ss_pred cCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCC
Q 005580 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGV 243 (690)
Q Consensus 164 ~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~ 243 (690)
++.++|...+.+-... .|+......+...+.+.|++++|+..|+++... .|+...+..+..++.
T Consensus 490 ~~~~eAi~a~~~Al~~--------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all------ 553 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ------ 553 (987)
T ss_pred CCcHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH------
Confidence 6778899877776432 244344333444556899999999999997643 455555555556666
Q ss_pred cccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccc
Q 005580 244 VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (690)
Q Consensus 244 ~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~ 323 (690)
+.|+.++|...+. +.... ...+...+..+... ....|++++|...|++-.+. .|+.
T Consensus 554 ----~~Gd~~eA~~~l~-------qAL~l-~P~~~~l~~~La~~------l~~~Gr~~eAl~~~~~AL~l--~P~~---- 609 (987)
T PRK09782 554 ----AAGNGAARDRWLQ-------QAEQR-GLGDNALYWWLHAQ------RYIPGQPELALNDLTRSLNI--APSA---- 609 (987)
T ss_pred ----HCCCHHHHHHHHH-------HHHhc-CCccHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CCCH----
Confidence 7899999999995 33322 11121112222222 33459999999999887754 2432
Q ss_pred hhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 005580 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (690)
Q Consensus 324 ~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~ 403 (690)
..|.. +-..+.+.|+.++|...|++..... +-+...++.+-..+...|+.
T Consensus 610 ----------------------------~a~~~-LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 610 ----------------------------NAYVA-RATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred ----------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 23334 6678899999999999999988763 23456778888899999999
Q ss_pred HHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005580 404 DMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 404 ~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
++|.++++...+. .| +...+..+-.++...|++++|...|++..+.
T Consensus 660 eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 660 AQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999988765 34 4467788888999999999999999998764
No 45
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.85 E-value=1.5e-05 Score=53.02 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~ 222 (690)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
No 46
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.85 E-value=0.0034 Score=70.02 Aligned_cols=241 Identities=12% Similarity=0.004 Sum_probs=158.3
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCC-CCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCH----HHH
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKK-DRSEQFQ-LRVELDMCSKRGDVMGAIRLYDKAQR---EGIKLGQ----YHY 229 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~-~~p~~~t-yn~lI~~~~k~g~~~~A~~lf~~M~~---~G~~pd~----~ty 229 (690)
.....++.+.|..+|..-.+. +++..| ..|.+.+ .+.+=..|...+++++|..+|.++.. ..+-++. .++
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~-l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRI-LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHH-HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 566789999999999986553 112222 3444333 33355678888999999999999973 2222232 334
Q ss_pred HHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHH
Q 005580 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (690)
Q Consensus 230 n~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~e 309 (690)
+.|=.+|+ +.|++++|...++ .|.+++..
T Consensus 287 ~nLa~ly~----------~~GKf~EA~~~~e-----------------------------------------~Al~I~~~ 315 (508)
T KOG1840|consen 287 NNLAVLYY----------KQGKFAEAEEYCE-----------------------------------------RALEIYEK 315 (508)
T ss_pred HHHHHHHh----------ccCChHHHHHHHH-----------------------------------------HHHHHHHH
Confidence 44444555 6666666666652 33334433
Q ss_pred HHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC---CCCCC
Q 005580 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---EVPMN 386 (690)
Q Consensus 310 M~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~---g~~pd 386 (690)
..|.. .|.+.+..+-+...|+..+++++|..++..-.+. -+.++
T Consensus 316 --~~~~~-------------------------------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 316 --LLGAS-------------------------------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred --hhccC-------------------------------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 11110 1122222222677788888999998888765431 22233
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHH----hC
Q 005580 387 E----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GI--NP-RLRSYGPALSVFCNNGDVDKACSVEEHML----EH 451 (690)
Q Consensus 387 ~----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~--~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~----~~ 451 (690)
. -+|+.|-..|-+.|++++|.+++++.... +- .+ .-..++-|-..|-+.+..++|.++|.+-. ..
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 3 57999999999999999999999987643 11 12 23456777788889999999999998743 33
Q ss_pred CCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005580 452 GVY-P-EEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (690)
Q Consensus 452 gv~-p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (690)
|.. | ...+|.-|...|.+.|++++|.++.+...
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 332 3 34688999999999999999999988876
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=0.003 Score=70.40 Aligned_cols=283 Identities=14% Similarity=0.049 Sum_probs=185.7
Q ss_pred CcchHhHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhccc
Q 005580 165 NDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 165 ~~~~A~~vf~~m~~~g~~~~~~~~p~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G--~~pd~~tyn~Ll~~~~~~~~ 241 (690)
+..+|...|..+. . ..+| ......+=.+|...++.++|.++|+..++.. ..-+..+|.++|.-+-+.
T Consensus 334 ~~~~A~~~~~klp------~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-- 403 (638)
T KOG1126|consen 334 NCREALNLFEKLP------S--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-- 403 (638)
T ss_pred HHHHHHHHHHhhH------H--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--
Confidence 3446667776641 1 1222 1455566678888899999999999998642 235788999999887731
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCC-Ccc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGH 320 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P-d~~ 320 (690)
-++..+. +++++. .-....+|.++=+. |.-.++.+.|.+.|++-.+. .| ...
T Consensus 404 ------------v~Ls~La------q~Li~~-~~~sPesWca~GNc------fSLQkdh~~Aik~f~RAiQl--dp~faY 456 (638)
T KOG1126|consen 404 ------------VALSYLA------QDLIDT-DPNSPESWCALGNC------FSLQKDHDTAIKCFKRAIQL--DPRFAY 456 (638)
T ss_pred ------------HHHHHHH------HHHHhh-CCCCcHHHHHhcch------hhhhhHHHHHHHHHHHhhcc--CCccch
Confidence 2222222 333332 11145789999999 99999999999999877653 34 445
Q ss_pred ccchhhhhhccccccCCCch-hh--hhcCCCCChhhhHHHH--HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005580 321 MKLNSQLLDGRSNLERGPDD-QS--RKKDWSIDNQDADEIR--LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (690)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~-~m--~~~g~~pd~~tyn~~l--I~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ 395 (690)
+|+ +-|+-..+..-|+ .| -+..+..|...||+.- =-.|.|.++++.|+--|+...+-+. -+.+....+-.
T Consensus 457 ayT----LlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~ 531 (638)
T KOG1126|consen 457 AYT----LLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGR 531 (638)
T ss_pred hhh----hcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhH
Confidence 553 3344322211111 11 1345566777887721 2457788999999998888776442 25566777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChH
Q 005580 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGD 474 (690)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~ 474 (690)
.+-+.|+.|+|++++++.....-+ |.-+---....+...++.++|+..++++++ +.|+. .+|-.|-..|.+.|+.+
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccch
Confidence 888899999999999987655322 222222233445567899999999999877 55654 56667778888899999
Q ss_pred HHHHHHHHHHHcCCCCChhH
Q 005580 475 RVYYLLHKLRTSVRKVSPST 494 (690)
Q Consensus 475 ~A~~ll~~M~~~~~g~~p~t 494 (690)
.|+.=|.-+.+. .|.++-
T Consensus 609 ~Al~~f~~A~~l--dpkg~~ 626 (638)
T KOG1126|consen 609 LALLHFSWALDL--DPKGAQ 626 (638)
T ss_pred HHHHhhHHHhcC--CCccch
Confidence 998887777766 444443
No 48
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.83 E-value=2e-05 Score=52.35 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (690)
|||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=97.82 E-value=0.0022 Score=73.78 Aligned_cols=116 Identities=10% Similarity=-0.092 Sum_probs=60.7
Q ss_pred CcchHhHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005580 165 NDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCS---------KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (690)
Q Consensus 165 ~~~~A~~vf~~m~~~g~~~~~~~~p~-~~tyn~lI~~~~---------k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~ 234 (690)
....|..+|++-.+. .|+ ...|..+-.++. ..+++++|...+++..... +-+...+..+-.
T Consensus 276 ~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~ 346 (553)
T PRK12370 276 SLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 356788888887432 232 234443333322 3345789999999887643 224455555544
Q ss_pred HHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHc
Q 005580 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (690)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (690)
.+. ..|+.++|...|+ +..+. .-.+...|..+-.. +...|++++|...|++..+.
T Consensus 347 ~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 347 INT----------IHSEYIVGSLLFK-------QANLL-SPISADIKYYYGWN------LFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHH----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhc
Confidence 444 4566677777664 22221 11122234444444 55556666666666555443
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=97.82 E-value=0.0012 Score=75.90 Aligned_cols=239 Identities=9% Similarity=-0.063 Sum_probs=130.8
Q ss_pred cHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhc
Q 005580 190 EQFQLRVELDMCSK-----RGDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (690)
Q Consensus 190 ~~~tyn~lI~~~~k-----~g~~~~A~~lf~~M~~~G~~pd~-~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~ 263 (690)
+...|...+.+... .++.++|+.+|++..+. .|+- ..|..|-.++..... .+.....++.++|...+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~-~g~~~~~~~~~~A~~~~~--- 328 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQ-MGIFDKQNAMIKAKEHAI--- 328 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHH-cCCcccchHHHHHHHHHH---
Confidence 44566666666432 23468999999998753 4554 344443333321110 000113345667777774
Q ss_pred cccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhh
Q 005580 264 MNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSR 343 (690)
Q Consensus 264 ~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~ 343 (690)
+..+. +-.+...|..+-.. +...|++++|...|++..+.. |+...
T Consensus 329 ----~Al~l-dP~~~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~l~--P~~~~---------------------- 373 (553)
T PRK12370 329 ----KATEL-DHNNPQALGLLGLI------NTIHSEYIVGSLLFKQANLLS--PISAD---------------------- 373 (553)
T ss_pred ----HHHhc-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--CCCHH----------------------
Confidence 22221 11144445555444 566777788888777766542 33211
Q ss_pred hcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc
Q 005580 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423 (690)
Q Consensus 344 ~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 423 (690)
.|.. +-..|...|+.++|...|++..+....+ ...+..++..+...|++++|...+++..+.. .|+..
T Consensus 374 ---------a~~~-lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~ 441 (553)
T PRK12370 374 ---------IKYY-YGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNP 441 (553)
T ss_pred ---------HHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCH
Confidence 1222 4456677788888888888777653221 1223334444566777788888777765542 24332
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 424 -SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 424 -ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
.+..+-..+...|+.++|...+.++... .|+. ...+.|-..|+..| ++|...++.+.+
T Consensus 442 ~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 442 ILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 3455556666778888888877776443 3332 23334444556555 466666666554
No 51
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.74 E-value=0.0055 Score=68.98 Aligned_cols=261 Identities=13% Similarity=0.031 Sum_probs=170.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCcc
Q 005580 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV-LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (690)
Q Consensus 200 ~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~-Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~ 278 (690)
.+...|++++|++.+..-. ..-+|...+-- .-..+. +.|+.++|..++. ++.+. +..|.
T Consensus 13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~----------kLg~~~eA~~~y~-------~Li~r-NPdn~ 72 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLL----------KLGRKEEAEKIYR-------ELIDR-NPDNY 72 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHH-CCCcH
Confidence 3477899999999886633 33456555444 444444 7888899998884 55553 33244
Q ss_pred chhhccccccccccccc-----cCCChhhHHHHHHHHHHcCCCCCccccchhhhhhc------cccccCCCchhhhhcCC
Q 005580 279 GQLDYGSSPMIDKLESN-----SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDG------RSNLERGPDDQSRKKDW 347 (690)
Q Consensus 279 ~tyn~LI~~~~~~~~~~-----~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g------~~~~a~~~~~~m~~~g~ 347 (690)
--|..|..+ .. .....+...++++++...- |-....- .+.=- +-..+...+..+..+|+
T Consensus 73 ~Yy~~L~~~------~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~--rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 73 DYYRGLEEA------LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPR--RLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred HHHHHHHHH------HhhhcccccccHHHHHHHHHHHHHhC--ccccchh--HhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 446666666 41 2235677788888886653 3332221 11111 11233334555666665
Q ss_pred CCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCChHHHHHHHH
Q 005580 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----E----------VPMNEA--SLTAVGRMAMSMGDGDMAFDMVK 411 (690)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g----------~~pd~~--tyn~LI~~~~~~g~~~~A~~l~~ 411 (690)
++ +++. |-+.|....+.+-..+++.+.... | -.|... ++.-|...|-..|+.++|+++++
T Consensus 143 Ps---lF~~-lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 143 PS---LFSN-LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred ch---HHHH-HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44 3445 666777666666666666665532 1 134443 44666777889999999999999
Q ss_pred HHHHCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005580 412 RMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490 (690)
Q Consensus 412 ~M~~~g~~Pd-~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~ 490 (690)
+..+. .|+ +.-|..--..+-+.|++++|.+.+++....... |-..-+-....+.++|++++|.+++........++
T Consensus 219 ~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 219 KAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 87776 466 456777777888999999999999998876543 77888888899999999999999999998873323
Q ss_pred ChhHHHH
Q 005580 491 SPSTADV 497 (690)
Q Consensus 491 ~p~t~~~ 497 (690)
..+...+
T Consensus 296 ~~~L~~m 302 (517)
T PF12569_consen 296 LSNLNDM 302 (517)
T ss_pred ccCHHHH
Confidence 3334443
No 52
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.69 E-value=0.024 Score=63.85 Aligned_cols=295 Identities=12% Similarity=0.044 Sum_probs=186.0
Q ss_pred HHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005580 158 QKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236 (690)
Q Consensus 158 ~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~ 236 (690)
+-+.+.|+.++|++.++.-.. ..+| ...+-..-..+.+.|+.++|..+|..+.+.+ |+-..|-..+..+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 355589999999999987522 2233 3556667778899999999999999999865 6666665555554
Q ss_pred HhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC--ccchhhccccccccccccccCCCh-hhHHHHHHHHHHc
Q 005580 237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENL 313 (690)
Q Consensus 237 ~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~~ 313 (690)
..... .......+....+++ ++... .+ +.+-.-.|. +.....+ ..+...+..+..+
T Consensus 82 ~g~~~----~~~~~~~~~~~~~y~-------~l~~~--yp~s~~~~rl~L~--------~~~g~~F~~~~~~yl~~~l~K 140 (517)
T PF12569_consen 82 LGLQL----QLSDEDVEKLLELYD-------ELAEK--YPRSDAPRRLPLD--------FLEGDEFKERLDEYLRPQLRK 140 (517)
T ss_pred Hhhhc----ccccccHHHHHHHHH-------HHHHh--CccccchhHhhcc--------cCCHHHHHHHHHHHHHHHHhc
Confidence 41110 001124555666664 33221 11 111111111 2233334 3456667778888
Q ss_pred CCCCCccccc-----------hhhhhhcccccc--CCCchhh-hhcCCCCChhhhHHHHH-HHHHhccCHHHHHHHHHHH
Q 005580 314 GQFSNGHMKL-----------NSQLLDGRSNLE--RGPDDQS-RKKDWSIDNQDADEIRL-SEDAKKYAFQRGFEIYEKM 378 (690)
Q Consensus 314 g~~Pd~~ty~-----------~~~li~g~~~~a--~~~~~~m-~~~g~~pd~~tyn~~lI-~~~~k~g~~~~A~~lf~~M 378 (690)
|+.+--...- ...++.++.... ...+..- ....-.|....|...++ ..|-..|+.++|++.+++-
T Consensus 141 gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 141 GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8644222211 112222222110 0011100 01112344445544344 5577899999999999998
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 005580 379 CLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (690)
Q Consensus 379 ~~~g~~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~ 457 (690)
.+. .|+ +-.|.+-.+.|-+.|++++|.+.++....... -|.+.=+-....+.++|++++|.+++....+.+..|-.
T Consensus 221 I~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 221 IEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred Hhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 876 355 56788889999999999999999999887754 47888888999999999999999999999887764432
Q ss_pred HHH--------HHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 458 PEL--------EALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 458 ~ty--------~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..+ ...-.+|.+.|++..|++.|....+.
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 222 33346778899988888776666554
No 53
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.65 E-value=0.00038 Score=60.60 Aligned_cols=76 Identities=14% Similarity=0.241 Sum_probs=44.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCCcchHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG--------DVDKACSVEEHMLEHGVYPEEPELEALL 464 (690)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~k~g--------~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (690)
|.-+...+++.....+++.+++.|+ .|.+.+|+.++.+.++.. .+-..+.++++|...+++|+..||+.+|
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555555555555 555555555555555432 2334566777777777777777777777
Q ss_pred HHHHH
Q 005580 465 RVSVE 469 (690)
Q Consensus 465 ~~~~~ 469 (690)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66654
No 54
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.63 E-value=0.00042 Score=75.46 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=95.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~ 435 (690)
+++.+....+++++..++.+.+.. ....-..|..++|+.|-+.|..++|+.+++.=...|+-||.+|||.||+.+.+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~ 151 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKK 151 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhc
Confidence 667777777888899988888765 332333455699999999999999999999888889999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 005580 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (690)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (690)
|++..|.+|..+|...+...+..|+..-+.+|.+.
T Consensus 152 ~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 152 GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999888888888888888887776
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.60 E-value=0.0068 Score=66.92 Aligned_cols=226 Identities=11% Similarity=-0.019 Sum_probs=149.4
Q ss_pred hhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 005580 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS-- 238 (690)
Q Consensus 161 ~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~-- 238 (690)
-..++.+.|...++.+.+.. |+ +...+..+...+.+.|++++|.+++..+.+.++.+.......-+.++..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~--P~-----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMA--PR-----HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 36789999999999996542 21 2367889999999999999999999999998765333221222222210
Q ss_pred -cccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCC
Q 005580 239 -AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316 (690)
Q Consensus 239 -~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~ 316 (690)
... .....+....... ...+ ..+ +.-.+-.+... +...|+.++|.+++++..+. .
T Consensus 237 ~~~~------~~~~~~~L~~~~~-------~~p~--~~~~~~~l~~~~a~~------l~~~g~~~~A~~~l~~~l~~--~ 293 (409)
T TIGR00540 237 DEAM------ADEGIDGLLNWWK-------NQPR--HRRHNIALKIALAEH------LIDCDDHDSAQEIIFDGLKK--L 293 (409)
T ss_pred HHHH------HhcCHHHHHHHHH-------HCCH--HHhCCHHHHHHHHHH------HHHCCChHHHHHHHHHHHhh--C
Confidence 000 0011112222221 1110 011 33446666667 89999999999999998875 3
Q ss_pred CCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHH
Q 005580 317 SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAV 393 (690)
Q Consensus 317 Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~---~tyn~L 393 (690)
||..... +-.+..-.....++.+.+.+.++...+. .|+. ....++
T Consensus 294 pd~~~~~------------------------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sL 341 (409)
T TIGR00540 294 GDDRAIS------------------------------LPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRAL 341 (409)
T ss_pred CCcccch------------------------------hHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHH
Confidence 4443210 0010222233456778888888877654 3433 455688
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M 448 (690)
-..|.+.|++++|.+.|+........||...+..+-..+.+.|+.++|.+++++-
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8889999999999999996445455799999999999999999999999999874
No 56
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.50 E-value=0.00055 Score=59.64 Aligned_cols=78 Identities=8% Similarity=0.051 Sum_probs=68.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCcchHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMG--------DGDMAFDMVKRMKSLGINPRLRSYGPA 428 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~-~pd~~tyn~LI~~~~~~g--------~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (690)
.|..+...+++.....+|+.++..|+ .|++.+||.++++.++.. ++-+.+.+++.|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 55666677999999999999999999 999999999999998853 234678889999999999999999999
Q ss_pred HHHHHhc
Q 005580 429 LSVFCNN 435 (690)
Q Consensus 429 I~~~~k~ 435 (690)
|..+.+.
T Consensus 111 l~~Llkg 117 (120)
T PF08579_consen 111 LGSLLKG 117 (120)
T ss_pred HHHHHHh
Confidence 9988763
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.50 E-value=0.038 Score=58.41 Aligned_cols=282 Identities=11% Similarity=-0.017 Sum_probs=192.1
Q ss_pred hcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 005580 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (690)
Q Consensus 163 ~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~ 242 (690)
.|++..|+++..+-.+. +..|- ..|-.-..+--+.||.+.|-.+..+.-+.--.++...+-+.-....
T Consensus 97 eG~~~qAEkl~~rnae~------~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH------GEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----- 164 (400)
T ss_pred cCcHHHHHHHHHHhhhc------CcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----
Confidence 47899999998886433 33343 6788888888999999999999999887544566666766666666
Q ss_pred CcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCcccc
Q 005580 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (690)
Q Consensus 243 ~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty 322 (690)
..|+.+.|..-.+.+ .+|.. .+...-...... |.+.|++.....++..|.+.|+--|...-
T Consensus 165 -----~~~d~~aA~~~v~~l----l~~~p----r~~~vlrLa~r~------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -----NRRDYPAARENVDQL----LEMTP----RHPEVLRLALRA------YIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -----hCCCchhHHHHHHHH----HHhCc----CChHHHHHHHHH------HHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 567777777666421 12221 155557777777 99999999999999999999876554322
Q ss_pred c-hh----hhhhccc--cccCC---Cchhhhh-cCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005580 323 L-NS----QLLDGRS--NLERG---PDDQSRK-KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (690)
Q Consensus 323 ~-~~----~li~g~~--~~a~~---~~~~m~~-~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn 391 (690)
- .. .+++-.. ..+.. .+.+..+ ..-.|.++. + ++.-+.++|+.++|.++..+-.+++..|...+
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~--~-~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~-- 300 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVV--A-YAERLIRLGDHDEAQEIIEDALKRQWDPRLCR-- 300 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHH--H-HHHHHHHcCChHHHHHHHHHHHHhccChhHHH--
Confidence 1 00 1111111 11111 1122211 112233332 2 56778899999999999999999888777222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH-HCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 005580 392 AVGRMAMSMGDGDMAFDMVKRMK-SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (690)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~-~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (690)
.-.+.+-++...=.+..++-. ..+-.| -.+.+|=.-|.+++.+.+|.+.|+.-.+ ..|+..+|+-+-++|.+.
T Consensus 301 --~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 301 --LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred --HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 224455666666555555433 446666 4556666678899999999999995544 679999999999999999
Q ss_pred CChHHHHHHHHHHHHc
Q 005580 471 GKGDRVYYLLHKLRTS 486 (690)
Q Consensus 471 g~~~~A~~ll~~M~~~ 486 (690)
|+..+|.++.++-...
T Consensus 375 g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 375 GEPEEAEQVRREALLL 390 (400)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999988876544
No 58
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.45 E-value=0.0011 Score=64.64 Aligned_cols=90 Identities=20% Similarity=0.333 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC----------------ChHHHH
Q 005580 384 PMNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKAC 442 (690)
Q Consensus 384 ~pd~~tyn~LI~~~~~-----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g----------------~~~~A~ 442 (690)
..|..+|..+|+.|.+ .|.++-...-++.|.+.|+.-|+.+|+.||+.+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3467777777777765 3677777777888888888888888888888776522 346789
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 005580 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (690)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (690)
+|+++|+..|+.||..|+..|++.+.+.+..
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 9999999999999999999999999887754
No 59
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.44 E-value=0.011 Score=65.19 Aligned_cols=258 Identities=15% Similarity=0.085 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p-d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~ 270 (690)
-+|..+-+.+-..|++.+|+.+|+.|.+. +| .+..|..+-.++. ..|+++.|.+.|. +.+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~----------~~~~~~~a~~~~~------~alq 178 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALV----------TQGDLELAVQCFF------EALQ 178 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHH----------hcCCCcccHHHHH------HHHh
Confidence 68888999999999999999999999874 44 4677888888888 7788889988884 2221
Q ss_pred ccCCCCccch-hhccccccccccccccCCChhhHHHHHHHHHHcCCCCC-ccccc-hhhhhhccc--cccCCCchhhhhc
Q 005580 271 DSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKL-NSQLLDGRS--NLERGPDDQSRKK 345 (690)
Q Consensus 271 ~~~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd-~~ty~-~~~li~g~~--~~a~~~~~~m~~~ 345 (690)
-....-+.-+ ...|+++ .|++++|..-+.+-.+. .|. .+.|+ .+.+...-. ..|..-|.+.+
T Consensus 179 lnP~l~ca~s~lgnLlka---------~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-- 245 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKA---------EGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-- 245 (966)
T ss_pred cCcchhhhhcchhHHHHh---------hcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh--
Confidence 1111111222 3334333 68888887777665443 232 12332 122222211 11222222222
Q ss_pred CCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-
Q 005580 346 DWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL- 422 (690)
Q Consensus 346 g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~- 422 (690)
.+.|+- ..|-+ |=+.|...+.+++|...|.+... ..|+ .+.|..|-..|-..|.+|.|++.+++..+. .|+-
T Consensus 246 kldP~f~dAYiN-LGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~ 320 (966)
T KOG4626|consen 246 KLDPNFLDAYIN-LGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFP 320 (966)
T ss_pred cCCCcchHHHhh-HHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCch
Confidence 234442 12333 44555556666666666665543 4565 466777878888899999999999987664 5664
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 423 ~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..|+.|-.++-..|++.+|...+.....-. .--....+-|-..|...|++++|..+|..-.+-
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 679999999999999999999999877642 223456677888999999999999999887765
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.37 E-value=0.016 Score=64.72 Aligned_cols=213 Identities=14% Similarity=0.076 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~---G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~e 268 (690)
.+...+-..|...|+++.|+.+|....+. +.-.+.-...+++..|+ .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a--------------------~---------- 249 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILA--------------------L---------- 249 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHH--------------------H----------
Confidence 56777999999999999999999988754 11111222222222222 0
Q ss_pred ccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCC
Q 005580 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (690)
Q Consensus 269 m~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~ 348 (690)
. |...+++++|..+|+++..- ....+.. -.
T Consensus 250 ------------------~------y~~~~k~~eAv~ly~~AL~i-------------~e~~~G~-------------~h 279 (508)
T KOG1840|consen 250 ------------------V------YRSLGKYDEAVNLYEEALTI-------------REEVFGE-------------DH 279 (508)
T ss_pred ------------------H------HHHhccHHHHHHHHHHHHHH-------------HHHhcCC-------------CC
Confidence 1 66777888888888877641 1111110 00
Q ss_pred CC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHh-----CCCC-CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC---C
Q 005580 349 ID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEVP-MNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSL---G 417 (690)
Q Consensus 349 pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-----~g~~-pd~~-tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g 417 (690)
|. ..++++ |-..|++.|++++|...+++-.+ .|.. |.+. -++.+...|+..+++++|..++..-.+. -
T Consensus 280 ~~va~~l~n-La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 PAVAATLNN-LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHH-HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 234455 66679999999888877766542 2322 3443 3677888899999999999998865432 1
Q ss_pred CCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 418 INPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEH------GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 418 ~~Pd~----~ty~~lI~~~~k~g~~~~A~~l~~~M~~~------gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
..++. -+|+.|=..|-+.|+.++|.++|+..... +..+ .-..++-|=..|.+.+..++|.++|.+-..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 22333 57899999999999999999999987643 2222 245677788888899999999999887543
No 61
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.13 Score=55.56 Aligned_cols=218 Identities=12% Similarity=0.049 Sum_probs=164.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC--c
Q 005580 202 SKRGDVMGAIRLYDKAQREGI--KLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--N 277 (690)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~G~--~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~--d 277 (690)
-...|+++|+.+|++..+..- --|..||+.+|..--. +..-.--|..++. +. -
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~---------~skLs~LA~~v~~--------------idKyR 329 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND---------KSKLSYLAQNVSN--------------IDKYR 329 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---------hHHHHHHHHHHHH--------------hccCC
Confidence 345799999999999997732 1478999999877652 1222224555552 21 3
Q ss_pred cchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHH
Q 005580 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (690)
Q Consensus 278 ~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (690)
..|+.++=+- |+-.++.++|...|+.-.+.+ |....-.++
T Consensus 330 ~ETCCiIaNY------YSlr~eHEKAv~YFkRALkLN----------------------------------p~~~~aWTL 369 (559)
T KOG1155|consen 330 PETCCIIANY------YSLRSEHEKAVMYFKRALKLN----------------------------------PKYLSAWTL 369 (559)
T ss_pred ccceeeehhH------HHHHHhHHHHHHHHHHHHhcC----------------------------------cchhHHHHH
Confidence 3455555555 777888999999999877653 111122232
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g 436 (690)
|=+-|..-.....|.+-++...+-. +.|--.|=.|=.+|.-.+...-|+-.|++... ++| |.+.|.+|=.+|.+.+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhc
Confidence 4477888888889999998887743 45888999999999999999999999987655 455 6789999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
++++|.+.|......|-. +...|..|-+.|-+-++.++|...|.+-.+.
T Consensus 447 ~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred cHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999877633 5688999999999999999999988887763
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.06 Score=55.50 Aligned_cols=263 Identities=11% Similarity=0.035 Sum_probs=160.5
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~ 238 (690)
-+...|..+.|.++...+.+. |+.-...-....-.|=.-|..+|-++.|..+|..+.+.|-. -.-..-.|+..|-
T Consensus 78 LfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ- 152 (389)
T COG2956 78 LFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQ- 152 (389)
T ss_pred HHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHH-
Confidence 344788999999999998432 22211111123334556677889999999999999876521 2234556777777
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccch---hhccccccccccccccCCChhhHHHHHHHHHHcC
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQ---LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~t---yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (690)
....+++|.++-. ++....+-. ++.. |.-|-.. +....+++.|..++..-.+.
T Consensus 153 ---------~treW~KAId~A~-------~L~k~~~q~~~~eIAqfyCELAq~------~~~~~~~d~A~~~l~kAlqa- 209 (389)
T COG2956 153 ---------ATREWEKAIDVAE-------RLVKLGGQTYRVEIAQFYCELAQQ------ALASSDVDRARELLKKALQA- 209 (389)
T ss_pred ---------HhhHHHHHHHHHH-------HHHHcCCccchhHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHhh-
Confidence 6677888887763 333321111 1111 2222222 34456677777777665543
Q ss_pred CCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005580 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (690)
Q Consensus 315 ~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI 394 (690)
.|+.+--+ .++=+.+...|+++.|.+.++...+.+..--..+...|.
T Consensus 210 -~~~cvRAs--------------------------------i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 210 -DKKCVRAS--------------------------------IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred -Cccceehh--------------------------------hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 23333222 223356778899999999999888876544456778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cC
Q 005580 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE---AG 471 (690)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~---~g 471 (690)
.+|.+.|++++....+..+.+..-.++. -..+-.---...-.+.|.....+-.. -+|+...+..||+.-.. .|
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhcccccc
Confidence 9999999999999988888776332222 22222222222334444444443333 25899999999887643 34
Q ss_pred ChHHHHHHHHHHHHc
Q 005580 472 KGDRVYYLLHKLRTS 486 (690)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (690)
...+-..+++.|...
T Consensus 333 ~~k~sL~~lr~mvge 347 (389)
T COG2956 333 RAKESLDLLRDMVGE 347 (389)
T ss_pred chhhhHHHHHHHHHH
Confidence 456667777777765
No 63
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.31 E-value=0.0031 Score=68.73 Aligned_cols=130 Identities=13% Similarity=0.152 Sum_probs=107.1
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 374 IYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 374 lf~~M~~---~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M 448 (690)
++.+|.. .+.+-+.+....+++.+....+++++..++...... ...--..|..++|..|.+.|..+++.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555553 355668889999999999999999999999988866 33334456679999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHHc
Q 005580 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFN 503 (690)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~ 503 (690)
...|+-||..|||.||+.+.+.|++..|.++..+|.....--.|.|+.. +...++
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987744455557665 444433
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.23 E-value=0.027 Score=59.92 Aligned_cols=141 Identities=10% Similarity=0.071 Sum_probs=102.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+-+-|--..+...|.+++-+... =++-|....+-|-+.|-+.|+-..|++.+-+--.. +.-|+.|.--|-..|....-
T Consensus 564 ianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence 33555556677777777755432 24557788999999999999999999887654333 45577777778888888888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHcc
Q 005580 438 VDKACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNS 504 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~ 504 (690)
.++|...|+... =+.|+..-|..||..| .+.|.+.+|+++++...++ -|..- ....+...|..
T Consensus 642 ~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~d 706 (840)
T KOG2003|consen 642 SEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhcc
Confidence 899999998753 3789999999998776 5689999999999998877 32221 33445555443
No 65
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.20 E-value=0.0024 Score=62.43 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=71.3
Q ss_pred ChhhhHHHHHHHHHh-----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHH
Q 005580 350 DNQDADEIRLSEDAK-----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------------GDGDMAFD 408 (690)
Q Consensus 350 d~~tyn~~lI~~~~k-----~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~----------------g~~~~A~~ 408 (690)
|..+|.. +|+.|.+ .|.++-...-+..|.+-|+.-|..+|+.||+.+=+. .+.+-|++
T Consensus 46 ~K~~F~~-~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 46 DKATFLE-AVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred cHHHHHH-HHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3444545 6666654 478888888999999999999999999999977552 23456999
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 409 MVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 409 l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
++++|+..|+.||..|+..|++.|.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999977765
No 66
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.011 Score=62.76 Aligned_cols=282 Identities=12% Similarity=0.106 Sum_probs=167.2
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRV--ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~--lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~ 237 (690)
+-+.++.+.|.+++.-+..+..+... ..-|. ++.-+--..++..|...-+..... .-||.---.--
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~s------aaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nk 496 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTAS------AAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNK 496 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhH------HHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcC
Confidence 44667778888888777543322211 12222 222222234677777776665432 22222111111
Q ss_pred hcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCC
Q 005580 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316 (690)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~ 316 (690)
..-+ --.|++++|.+.+. |...+ +-. ....||+-+.+ -..|++++|+..|-.+..- .
T Consensus 497 gn~~-----f~ngd~dka~~~yk-------eal~n-dasc~ealfniglt~-------e~~~~ldeald~f~klh~i--l 554 (840)
T KOG2003|consen 497 GNIA-----FANGDLDKAAEFYK-------EALNN-DASCTEALFNIGLTA-------EALGNLDEALDCFLKLHAI--L 554 (840)
T ss_pred Ccee-----eecCcHHHHHHHHH-------HHHcC-chHHHHHHHHhcccH-------HHhcCHHHHHHHHHHHHHH--H
Confidence 0000 03577888888774 33322 111 12226665543 4567788888877665421 1
Q ss_pred CCc--cccchhhhhhccc---cccCCCchhhhhcCCCCChh-hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 005580 317 SNG--HMKLNSQLLDGRS---NLERGPDDQSRKKDWSIDNQ-DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (690)
Q Consensus 317 Pd~--~ty~~~~li~g~~---~~a~~~~~~m~~~g~~pd~~-tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty 390 (690)
.|. +.| .+.+-|- +.+..+---|....+.|+-. ..+. |-+.|-+.|+-..|++.+-+--. -++-|..|.
T Consensus 555 ~nn~evl~---qianiye~led~aqaie~~~q~~slip~dp~ilsk-l~dlydqegdksqafq~~ydsyr-yfp~nie~i 629 (840)
T KOG2003|consen 555 LNNAEVLV---QIANIYELLEDPAQAIELLMQANSLIPNDPAILSK-LADLYDQEGDKSQAFQCHYDSYR-YFPCNIETI 629 (840)
T ss_pred HhhHHHHH---HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH-HHHHhhcccchhhhhhhhhhccc-ccCcchHHH
Confidence 111 111 2222221 22222222344445555443 3444 78899999999999887654332 356688888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005580 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN-NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (690)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k-~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (690)
.-|-.-|....-+++|+..|+... =++|+..-|-.+|..|.+ .|+..+|++++.+..++ +.-|.....-|++.+..
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcc
Confidence 889899999999999999998643 378999999999987765 69999999999998655 66788888888888777
Q ss_pred cCChHHHHHHHHHHH
Q 005580 470 AGKGDRVYYLLHKLR 484 (690)
Q Consensus 470 ~g~~~~A~~ll~~M~ 484 (690)
.|.- ++.++-+++.
T Consensus 707 lgl~-d~key~~kle 720 (840)
T KOG2003|consen 707 LGLK-DAKEYADKLE 720 (840)
T ss_pred ccch-hHHHHHHHHH
Confidence 7643 4444444443
No 67
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.08 E-value=0.0055 Score=64.13 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=85.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (690)
.|..|.+.++++.|.+.++.|.+. ..| .+..-|..++.. ...+.+|+-+|++|... +.++..+.|.+.-++.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 667788888888888888888864 234 344445555443 23588888888887655 5577778888888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHc
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~ll~~M~~~ 486 (690)
..|++++|.+++.+..... .-|..|..-+|......|+. +.+.+++.+++..
T Consensus 213 ~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8888888888888876543 22455666677777777777 6677888888876
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.07 E-value=0.062 Score=55.35 Aligned_cols=244 Identities=11% Similarity=-0.001 Sum_probs=168.4
Q ss_pred CCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhH
Q 005580 180 GSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDT 258 (690)
Q Consensus 180 g~~~~~~~~p~~~ty-n~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~v 258 (690)
+.....++.-| .=| +.+=.+|-+-|.+.+|.+.|..-... .|-+.||--|-++|. +..+.+.|+.+
T Consensus 212 ~~s~~~~~~~d-wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~----------ridQP~~AL~~ 278 (478)
T KOG1129|consen 212 KPSGSTGCTLD-WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQ----------RIDQPERALLV 278 (478)
T ss_pred cccccccchHh-HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHH----------HhccHHHHHHH
Confidence 33334444445 334 45667888999999999999887765 466778888999999 77888999999
Q ss_pred hhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCC
Q 005580 259 FEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGP 338 (690)
Q Consensus 259 f~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~ 338 (690)
|. +-.+ .++-.|||-.=+.- .+-..++.++|.+++++..+.. |+-+-
T Consensus 279 ~~-------~gld--~fP~~VT~l~g~AR-----i~eam~~~~~a~~lYk~vlk~~--~~nvE----------------- 325 (478)
T KOG1129|consen 279 IG-------EGLD--SFPFDVTYLLGQAR-----IHEAMEQQEDALQLYKLVLKLH--PINVE----------------- 325 (478)
T ss_pred Hh-------hhhh--cCCchhhhhhhhHH-----HHHHHHhHHHHHHHHHHHHhcC--Cccce-----------------
Confidence 95 2222 22334454221111 1445667788888888766542 11110
Q ss_pred chhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005580 339 DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (690)
Q Consensus 339 ~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (690)
.. +.+-.+|.-.++++-|+..|+++..-|+. +...|+.+--+|.-.+++|-++--|......--
T Consensus 326 --------------ai-Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 326 --------------AI-ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred --------------ee-eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 00 11345666778999999999999999986 556677777778888999999999888776544
Q ss_pred CCCc--chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 419 NPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 419 ~Pd~--~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|+. ..|-.|=....-.|++..|.+.|+-...++- -+...||-|--.-.+.|++++|..+++.-.+.
T Consensus 390 ~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 390 QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 4443 2344444445567999999999998766542 24567777777778999999999999987766
No 69
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.99 E-value=0.14 Score=59.27 Aligned_cols=297 Identities=12% Similarity=0.030 Sum_probs=179.2
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~ 239 (690)
..+.+++..|.-.|.+-++....... ..|+- +..|-+.|+...|..-|.+|....-+.|..-+-.+|...++.
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~------~~~er-s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWE------LIYER-SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchH------HHHHH-HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 34556666677777766443211111 33332 456778899999999998887653233333344444443321
Q ss_pred ccCCcccCCCCchhhHHhHhhhhcccccccccc-CCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCC-
Q 005580 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS- 317 (690)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~-~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P- 317 (690)
- -..+..+.|...+. .-... .+....-.+|++... |.+...++.|......+..+...|
T Consensus 290 ~------~~~~~~e~a~~~le-------~~~s~~~~~~~~ed~ni~ael------~l~~~q~d~~~~~i~~~~~r~~e~d 350 (895)
T KOG2076|consen 290 F------ITHNERERAAKALE-------GALSKEKDEASLEDLNILAEL------FLKNKQSDKALMKIVDDRNRESEKD 350 (895)
T ss_pred H------HHhhHHHHHHHHHH-------HHHhhccccccccHHHHHHHH------HHHhHHHHHhhHHHHHHhccccCCC
Confidence 1 03444577777774 22221 111144457888888 999999999999999888843333
Q ss_pred ---------------------Cccccchh--hhhhccc-----cccCCCchhhhhcCCCC--ChhhhHHHHHHHHHhccC
Q 005580 318 ---------------------NGHMKLNS--QLLDGRS-----NLERGPDDQSRKKDWSI--DNQDADEIRLSEDAKKYA 367 (690)
Q Consensus 318 ---------------------d~~ty~~~--~li~g~~-----~~a~~~~~~m~~~g~~p--d~~tyn~~lI~~~~k~g~ 367 (690)
+..+|... .+.-++. .....+..-.....+.| ++--|-. +.++|...|+
T Consensus 351 ~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d-~a~al~~~~~ 429 (895)
T KOG2076|consen 351 DSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD-LADALTNIGK 429 (895)
T ss_pred hhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH-HHHHHHhccc
Confidence 33333200 1111111 11111333333333222 2233445 6788889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChHHHHHHHH
Q 005580 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEE 446 (690)
Q Consensus 368 ~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~~~~A~~l~~ 446 (690)
+.+|+++|..+...-..-+.+.|--+-++|-..|..++|.+.++..... .|+. -.=-+|-.-+-+.|+.|+|.+.++
T Consensus 430 ~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 430 YKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred HHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 9999999999988766667888888999999999999999998887654 2332 222334445667899999999888
Q ss_pred HHH--------hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 447 HML--------EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 447 ~M~--------~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
.|. ..+..|+...---..+.|...|+.++=...-..|..
T Consensus 508 ~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 508 QIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred cccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 864 234455565555666777778887775555555544
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.94 E-value=0.2 Score=53.72 Aligned_cols=230 Identities=11% Similarity=-0.036 Sum_probs=131.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-cc
Q 005580 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NN 278 (690)
Q Consensus 200 ~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~ 278 (690)
.+...|++++|.+++++..... +-|...+.. ...+...+ ...+....+...+. . ... ..+ ..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~------~~~~~~~~~~~~l~-------~-~~~-~~~~~~ 114 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG------DFSGMRDHVARVLP-------L-WAP-ENPDYW 114 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc------ccccCchhHHHHHh-------c-cCc-CCCCcH
Confidence 4567789999999999987652 333334442 11111100 03455556666653 1 110 111 11
Q ss_pred chhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHH
Q 005580 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (690)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~l 358 (690)
.....+-.. +...|++++|...+++..+.. |+..... .. +
T Consensus 115 ~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~--p~~~~~~-------------------------------~~-l 154 (355)
T cd05804 115 YLLGMLAFG------LEEAGQYDRAEEAARRALELN--PDDAWAV-------------------------------HA-V 154 (355)
T ss_pred HHHHHHHHH------HHHcCCHHHHHHHHHHHHhhC--CCCcHHH-------------------------------HH-H
Confidence 223333344 678899999999999988763 5543221 12 5
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCcchH-H--HHHHH
Q 005580 359 LSEDAKKYAFQRGFEIYEKMCLDEV-PMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-G--PALSV 431 (690)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g~-~pd~--~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty-~--~lI~~ 431 (690)
-..|...|++++|...+++...... .|+. ..|-.+...+...|+.++|..++++...... .+..... + .++.-
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 5777888999999999988776432 2333 3466788888899999999999988754321 1112111 1 33344
Q ss_pred HHhcCChHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 432 FCNNGDVDKACSV--EEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 432 ~~k~g~~~~A~~l--~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+-..|..+.+.+. ......... ............++...|+.++|..++..+...
T Consensus 235 ~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 235 LELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4445544444433 222111111 111122225666778888899999999988764
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.94 E-value=0.11 Score=54.68 Aligned_cols=218 Identities=11% Similarity=-0.042 Sum_probs=140.9
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccch
Q 005580 204 RGDVMGAIRLYDKAQREG-IKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (690)
Q Consensus 204 ~g~~~~A~~lf~~M~~~G-~~pd~--~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~t 280 (690)
.+..+.++.-+.++.... +.|+. ..|..+=..+. ..|+.++|...|. +.... .-.+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a 100 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYD----------SLGLRALARNDFS-------QALAL-RPDMADA 100 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHc-CCCCHHH
Confidence 456677888888887532 33332 33444444455 6789999999885 33321 2225566
Q ss_pred hhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHH
Q 005580 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (690)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~ 360 (690)
|+.+-.. +...|++++|...|+...+. .|+- ...|.. +-.
T Consensus 101 ~~~lg~~------~~~~g~~~~A~~~~~~Al~l--~P~~-------------------------------~~a~~~-lg~ 140 (296)
T PRK11189 101 YNYLGIY------LTQAGNFDAAYEAFDSVLEL--DPTY-------------------------------NYAYLN-RGI 140 (296)
T ss_pred HHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHH
Confidence 8888778 99999999999999988764 3432 123334 556
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHH
Q 005580 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~ 440 (690)
.+...|+.++|.+.|+...+.. |+..........+...++.++|.+.|.+.... ..|+...+ .+. ....|+..+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccCCCH
Confidence 6778899999999999988753 44322222222344568899999999765433 33443322 222 233566655
Q ss_pred HHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 441 ACSVEEHMLEH---GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 441 A~~l~~~M~~~---gv--~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+ +.++.+.+. .. .| ....|..|-..+.+.|+.++|...|++-...
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 355555432 11 11 2357888889999999999999999999876
No 72
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.082 Score=59.29 Aligned_cols=235 Identities=9% Similarity=-0.015 Sum_probs=152.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccccccc--CCCCccchhhc
Q 005580 206 DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS--RDMDNNGQLDY 283 (690)
Q Consensus 206 ~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~--~gv~d~~tyn~ 283 (690)
+..+|+.+|..... .+.-+.....-+=.+|. ..++.++|+++|. ...+. ..+++.-.|++
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayF----------El~~Y~~a~~~F~-------~~r~~~p~rv~~meiyST 395 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYF----------ELIEYDQAERIFS-------LVRRIEPYRVKGMEIYST 395 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHH----------HHHHHHHHHHHHH-------HHHhhccccccchhHHHH
Confidence 35788888888433 23333344455555666 5677888888885 33322 23346666777
Q ss_pred cccccccccccccCCCh-hhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHH
Q 005580 284 GSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362 (690)
Q Consensus 284 LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~ 362 (690)
.+.- +-+.=.+ --|..+.+.+ .. ...+|-+ +=+.|
T Consensus 396 ~LWH------Lq~~v~Ls~Laq~Li~~~--------------------------------~~-----sPesWca-~GNcf 431 (638)
T KOG1126|consen 396 TLWH------LQDEVALSYLAQDLIDTD--------------------------------PN-----SPESWCA-LGNCF 431 (638)
T ss_pred HHHH------HHhhHHHHHHHHHHHhhC--------------------------------CC-----CcHHHHH-hcchh
Confidence 6655 1110000 0011111111 11 2235555 76888
Q ss_pred HhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHH---HHHHhcCCh
Q 005580 363 AKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL---SVFCNNGDV 438 (690)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI---~~~~k~g~~ 438 (690)
.-.++.+.|++.|++-.+ +.| ...+|+-+=+-+....++|.|...|+.- +..|.+.||+.- -.|.|.++.
T Consensus 432 SLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LGVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred hhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh----hcCCchhhHHHHhhhhheeccchh
Confidence 899999999999998876 345 6788888877788888999999999764 445778887754 467889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHcchHHHHhh
Q 005580 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLG 511 (690)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~~~~a~ 511 (690)
+.|.-.|+...+-+ .-+.+....+-..+-+.|+.|+|++++++-..- .+... -|....-++..++..+|.
T Consensus 506 e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 506 EFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred hHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHHhhcchHHHH
Confidence 99999999876643 125566666777778899999999999988765 33322 455555566666655555
No 73
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.83 E-value=0.11 Score=55.03 Aligned_cols=224 Identities=12% Similarity=0.021 Sum_probs=151.4
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHH
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-------YHYNVL 232 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~-------~tyn~L 232 (690)
....++...|..=.+.+.+.+.. +....+....+|.+.|++...+.+...|.+.|+--|. .+|+.+
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr-------~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPR-------HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcC-------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 33556677777777776544321 2278999999999999999999999999999976554 567888
Q ss_pred HHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHH
Q 005580 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (690)
Q Consensus 233 l~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~ 312 (690)
+.-+.... .+..+...+..++++.+.+ .-.-.+++.- +.+.|..++|.++..+-.+
T Consensus 236 L~q~~~~~-------------~~~gL~~~W~~~pr~lr~~-----p~l~~~~a~~------li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 236 LQQARDDN-------------GSEGLKTWWKNQPRKLRND-----PELVVAYAER------LIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred HHHHhccc-------------cchHHHHHHHhccHHhhcC-----hhHHHHHHHH------HHHcCChHHHHHHHHHHHH
Confidence 87766322 2222333332222222221 1111222222 7888999999999988888
Q ss_pred cCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHH-hCCCCCCHHHHH
Q 005580 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC-LDEVPMNEASLT 391 (690)
Q Consensus 313 ~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~-~~g~~pd~~tyn 391 (690)
++-.|...++ -++.+-++.+.=.+..++-. ..+..| -.+.
T Consensus 292 ~~~D~~L~~~-------------------------------------~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~ 332 (400)
T COG3071 292 RQWDPRLCRL-------------------------------------IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLS 332 (400)
T ss_pred hccChhHHHH-------------------------------------HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHH
Confidence 7766664333 23445555555555555433 344545 6778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 005580 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455 (690)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~p 455 (690)
+|=..|.+.+.|.+|.+.|+.-. ...|+..+|+-+-++|.+.|+.++|.+++++-...-..|
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 88888999999999999999544 457899999999999999999999999998865433333
No 74
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.75 E-value=0.059 Score=58.60 Aligned_cols=122 Identities=12% Similarity=0.112 Sum_probs=97.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
|+..+...++++.|.++|+++.+.. |++. ..|++.+...++-.+|.+++++..+. .+-|......-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 4455666789999999999999875 6644 45788888889999999999998865 22244444555566889999
Q ss_pred hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 438 VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+.|.++.+++.. +.|+. .+|..|..+|.+.|+++.|+..++.+.-.
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999987 45655 59999999999999999999999887644
No 75
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.087 Score=61.42 Aligned_cols=216 Identities=10% Similarity=0.093 Sum_probs=114.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhcc
Q 005580 205 GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG 284 (690)
Q Consensus 205 g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~L 284 (690)
+.++.|.++-++.. .+..|+.|-.+=- ..|.+.+|.+-|- .-.|...|--+
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL----------~~~~v~dAieSyi-------------kadDps~y~eV 1139 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQL----------QGGLVKDAIESYI-------------KADDPSNYLEV 1139 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHH----------hcCchHHHHHHHH-------------hcCCcHHHHHH
Confidence 45555555544432 3456666666655 5677888887773 22366668888
Q ss_pred ccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHh
Q 005580 285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (690)
Q Consensus 285 I~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (690)
|+. ..+.|.+++-.+.+..-.++.-.|.+-+- ||-+|++..+ +.++..--..||+...-. +=+-|..
T Consensus 1140 i~~------a~~~~~~edLv~yL~MaRkk~~E~~id~e----Li~AyAkt~r--l~elE~fi~gpN~A~i~~-vGdrcf~ 1206 (1666)
T KOG0985|consen 1140 IDV------ASRTGKYEDLVKYLLMARKKVREPYIDSE----LIFAYAKTNR--LTELEEFIAGPNVANIQQ-VGDRCFE 1206 (1666)
T ss_pred HHH------HHhcCcHHHHHHHHHHHHHhhcCccchHH----HHHHHHHhch--HHHHHHHhcCCCchhHHH-HhHHHhh
Confidence 888 88999999998888766666666665442 3333321111 011111111122211111 1122233
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l 444 (690)
.|.++.|.-+|. ++.-|.-|..-+...|++..|.+--++. -++.||--+-.+|...+.+..|
T Consensus 1207 ~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA--- 1268 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA--- 1268 (1666)
T ss_pred hhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH---
Confidence 333333333332 2223444444444445544444433321 2445666666666555554433
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005580 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (690)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (690)
.|..-.+........-||..|-..|.+++...+++.
T Consensus 1269 --QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1269 --QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred --HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 243334455566677788888888888887777654
No 76
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.66 E-value=0.079 Score=53.39 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=112.2
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
+.+.|++++|...|++.... .|+.... ...+.. +-..|-+.|++++|..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~----------------------------~~a~~~-la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESR--YPFSPYA----------------------------EQAQLD-LAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCchhH----------------------------HHHHHH-HHHHHHhcCCHHHHHH
Confidence 77889999999999988664 2332110 011223 5577888999999999
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCcc-hH-----------------
Q 005580 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINPRLR-SY----------------- 425 (690)
Q Consensus 374 lf~~M~~~g~~pd~~--tyn~LI~~~~~~--------g~~~~A~~l~~~M~~~g~~Pd~~-ty----------------- 425 (690)
.|+++.+........ ++..+-.++.+. |+.++|.+.|+.+... .|+.. .+
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999998754322222 333333444433 7789999999998765 34432 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 426 GPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 426 ~~lI~~~~k~g~~~~A~~l~~~M~~~g--v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
-.+-..+.+.|+.++|...+++..+.. -......+..+...+.+.|+.++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 123456778899999999999987652 1224578889999999999999999999998876
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.57 E-value=0.32 Score=52.16 Aligned_cols=228 Identities=13% Similarity=0.016 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G-~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~ 270 (690)
..|..+-..+...|+.+.|...+....... ..++...... +.+..-. ..|+.++|...+. +..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~a~~~~--------~~g~~~~A~~~~~-------~~l 70 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH-VEALSAW--------IAGDLPKALALLE-------QLL 70 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH-HHHHHHH--------HcCCHHHHHHHHH-------HHH
Confidence 345555555666678888777776655332 2234333322 2222211 4688999999884 433
Q ss_pred ccCCCC-ccchhhc---cccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcC
Q 005580 271 DSRDMD-NNGQLDY---GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (690)
Q Consensus 271 ~~~gv~-d~~tyn~---LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g 346 (690)
+. .+ |...++. +... ....+..+.+.+.+.. .....|+...+.
T Consensus 71 ~~--~P~~~~a~~~~~~~~~~------~~~~~~~~~~~~~l~~--~~~~~~~~~~~~----------------------- 117 (355)
T cd05804 71 DD--YPRDLLALKLHLGAFGL------GDFSGMRDHVARVLPL--WAPENPDYWYLL----------------------- 117 (355)
T ss_pred HH--CCCcHHHHHHhHHHHHh------cccccCchhHHHHHhc--cCcCCCCcHHHH-----------------------
Confidence 32 23 4444442 1111 2234555666666554 222333332221
Q ss_pred CCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCc--c
Q 005580 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRL--R 423 (690)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~--~ 423 (690)
.++-..+...|++++|.+.+++..+.. +.+...+..+-..|...|++++|..++++..... ..|+. .
T Consensus 118 ---------~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 118 ---------GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred ---------HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 113356778999999999999999864 3456778899999999999999999999877642 12343 3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHHcCChHHHHH
Q 005580 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEEPEL-E--ALLRVSVEAGKGDRVYY 478 (690)
Q Consensus 424 ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv-~pd~~ty-~--~Li~~~~~~g~~~~A~~ 478 (690)
.|..+...+...|+.++|..++++...... .+..... + .++.-+...|..+.+.+
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR 246 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence 466788889999999999999999854332 2222222 2 33444455554444333
No 78
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.53 E-value=0.2 Score=54.56 Aligned_cols=125 Identities=13% Similarity=0.033 Sum_probs=100.3
Q ss_pred CCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHH
Q 005580 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (690)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (690)
.||.+.|.....+-+.+.++..+|.+.|+.+... .|+ ....-.+-.+|.+.|++.+|..+++.-... .+-|...|.
T Consensus 336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~ 412 (484)
T COG4783 336 QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWD 412 (484)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHH
Confidence 5677777776788899999999999999998875 465 566667778899999999999999887655 456788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 427 ~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
.|-.+|...|+..+|..-..|+ |.-.|++++|...+..-++....-.|+
T Consensus 413 ~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 413 LLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 9999999999998888777665 467799999999998888874444555
No 79
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.52 E-value=0.42 Score=55.58 Aligned_cols=82 Identities=9% Similarity=0.055 Sum_probs=56.7
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCS 237 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p-d~~tyn~Ll~~~~ 237 (690)
.+.. |+.++|.+++.+.+.+.. -+...|-+|=..|-+.|+.++++..+- ....+.| |..-|-.+-....
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp-------~~~~ay~tL~~IyEqrGd~eK~l~~~l--lAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDP-------RNPIAYYTLGEIYEQRGDIEKALNFWL--LAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCc-------cchhhHHHHHHHHHHcccHHHHHHHHH--HHHhcCCCChHHHHHHHHHHH
Confidence 4444 999999999999976522 233789999999999999999987764 3333443 4455555554444
Q ss_pred hcccCCcccCCCCchhhHHhHhh
Q 005580 238 SAAVGVVKPAKSGSGMRTLDTFE 260 (690)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~vf~ 260 (690)
..|.+++|.-.|.
T Consensus 219 ----------~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 219 ----------QLGNINQARYCYS 231 (895)
T ss_pred ----------hcccHHHHHHHHH
Confidence 5677777777764
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.31 E-value=0.089 Score=55.11 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=97.5
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----c
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k----~ 435 (690)
..+...|++++|+++++.- .+.-.....+..|.+.++++.|.+.++.|.+.. .| .+-.-|..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence 4567789999999888642 356677788999999999999999999998763 33 344445554443 3
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hh-HHHHHHHHHcchHH
Q 005580 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PS-TADVIAKWFNSKEA 507 (690)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~-p~-t~~~I~~~~~~~~~ 507 (690)
..+.+|..+|+++.+. ..++..+.|.+..+....|++++|.+++.+-... .+. |+ ..|.|......|+.
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-T
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCC
Confidence 4699999999998665 6789999999999999999999999999997655 332 33 35655544444443
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.26 E-value=0.13 Score=46.75 Aligned_cols=90 Identities=12% Similarity=0.153 Sum_probs=46.3
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh
Q 005580 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (690)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~ 438 (690)
...+.+.|+.++|.+.|+.....+ +.+...|..+-..+.+.|++++|..+++...+.+ ..+...|..+-..+...|+.
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCH
Confidence 344555556666666665555432 2244555555555555566666666555544432 12334444444455555555
Q ss_pred HHHHHHHHHHHh
Q 005580 439 DKACSVEEHMLE 450 (690)
Q Consensus 439 ~~A~~l~~~M~~ 450 (690)
++|...|+...+
T Consensus 102 ~~A~~~~~~al~ 113 (135)
T TIGR02552 102 ESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 82
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.83 Score=53.69 Aligned_cols=337 Identities=14% Similarity=0.055 Sum_probs=204.5
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHH-------H
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQY-------H 228 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~---G~~pd~~-------t 228 (690)
.+-..++...++.+|......-. ...+. +.....|.+=......|++..|...|...+.. -..+|.. -
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L~-~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDILE-SKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHHH-HcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 44455666666666654321100 11112 23367888888888999999999999998754 2334442 2
Q ss_pred HHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccC-------CChh
Q 005580 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSS-------YRFD 301 (690)
Q Consensus 229 yn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~-------g~~~ 301 (690)
|| |..|.. ..++.+.|...+. ++... |-.-|++ |.+. +.+.
T Consensus 500 YN--larl~E---------~l~~~~~A~e~Yk-------~Ilke--------hp~YId~------ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 500 YN--LARLLE---------ELHDTEVAEEMYK-------SILKE--------HPGYIDA------YLRLGCMARDKNNLY 547 (1018)
T ss_pred HH--HHHHHH---------hhhhhhHHHHHHH-------HHHHH--------CchhHHH------HHHhhHHHHhccCcH
Confidence 33 222221 3456777888875 22211 2223344 4333 4566
Q ss_pred hHHHHHHHHHH-cCCCCCccccchhhhh--hccccccCCCchhhhhcCC-CCChhhhHHHHH-H----HHH--------h
Q 005580 302 DLDSTFNEKEN-LGQFSNGHMKLNSQLL--DGRSNLERGPDDQSRKKDW-SIDNQDADEIRL-S----EDA--------K 364 (690)
Q Consensus 302 ~A~~lf~eM~~-~g~~Pd~~ty~~~~li--~g~~~~a~~~~~~m~~~g~-~pd~~tyn~~lI-~----~~~--------k 364 (690)
+|..++++... ...-|++.+|- |-+- .--...|..-|..+..+-. .+|. |..+-+ + .+- .
T Consensus 548 ea~~~lk~~l~~d~~np~arsl~-G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~--YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 548 EASLLLKDALNIDSSNPNARSLL-GNLHLKKSEWKPAKKKFETILKKTSTKTDA--YSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred HHHHHHHHHHhcccCCcHHHHHH-HHHHHhhhhhcccccHHHHHHhhhccCCch--hHHHHhhHHHHHHhcccccChHHH
Confidence 77777776544 34567777663 1011 1111334443333333211 1343 322111 1 111 2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l 444 (690)
.+..++|+++|.+..... +-|...-|-+--.++..|++.+|.++|.+..+... -+.-+|-.+-++|...|++..|.++
T Consensus 625 kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHH
Confidence 345688999999887653 34677778888889999999999999999998754 3445677889999999999999999
Q ss_pred HHHHHh-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHcchHHHHhhccc------c
Q 005580 445 EEHMLE-HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKKK------W 515 (690)
Q Consensus 445 ~~~M~~-~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~~~~a~~~~------~ 515 (690)
|+.-.+ ..-.-+..+.+.|-+++-++|.+.+|.+.+-.-... .|... .+|+....++........... .
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~ 780 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLE 780 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 987554 455568888999999999999999999988777766 44444 355533333332222222111 1
Q ss_pred hhhHHHHHhhhcCCccccccccCCC
Q 005580 516 NESLIKDTMENKGGGWHGLGWLGKG 540 (690)
Q Consensus 516 ~~~~v~ea~~~~g~~~~~M~~~g~~ 540 (690)
....+++|++ +|.+|...+-.
T Consensus 781 a~~~le~a~r----~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 781 AVKELEEARR----LFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHH----HHHHHHhcCCC
Confidence 2356677777 88888766655
No 83
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.23 E-value=0.097 Score=54.61 Aligned_cols=130 Identities=9% Similarity=0.025 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 005580 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (690)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (690)
+|-. ++...-+.+.++.|..+|.+..+.+ +..++....++|.-+ ..++.+.|..+|+...+. +.-+..-|..-|+.
T Consensus 3 v~i~-~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQ-YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4555 7788888889999999999998654 455666666666443 356778899999998876 45577778899999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 432 FCNNGDVDKACSVEEHMLEHGVYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 432 ~~k~g~~~~A~~l~~~M~~~gv~pd~---~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.+.|+.+.|..+|+..... +.++. ..|...|+.=.+.|+++.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999866 33332 49999999999999999999999999987
No 84
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.21 E-value=0.073 Score=43.34 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=39.7
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChH
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~ 439 (690)
..+...|++++|..+|++..+.. +.+...+..+...+...|++++|.+.|+...... ..+..++..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 34445555555555555554432 1122344444445555555555555555444332 112234444444444445555
Q ss_pred HHHHHHHHH
Q 005580 440 KACSVEEHM 448 (690)
Q Consensus 440 ~A~~l~~~M 448 (690)
+|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 555444443
No 85
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.21 E-value=0.48 Score=57.52 Aligned_cols=191 Identities=12% Similarity=0.030 Sum_probs=139.6
Q ss_pred CCCchhhHHhHhhhhccccccccccCCCC----ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccc
Q 005580 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (690)
Q Consensus 248 k~g~~~~A~~vf~~~~~~s~em~~~~gv~----d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~ 323 (690)
..+.++.|+.++. +....-.+. -.-.|-++++. -.-.|.-+...++|++..+..
T Consensus 1470 elsEiekAR~iae-------rAL~tIN~REeeEKLNiWiA~lNl------En~yG~eesl~kVFeRAcqyc--------- 1527 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAE-------RALKTINFREEEEKLNIWIAYLNL------ENAYGTEESLKKVFERACQYC--------- 1527 (1710)
T ss_pred hhhhhHHHHHHHH-------HHhhhCCcchhHHHHHHHHHHHhH------HHhhCcHHHHHHHHHHHHHhc---------
Confidence 5677888888885 322211222 12236666666 555565666777777765531
Q ss_pred hhhhhhccccccCCCchhhhhcCCCCChh-hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005580 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQ-DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (690)
Q Consensus 324 ~~~li~g~~~~a~~~~~~m~~~g~~pd~~-tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~ 402 (690)
|.. .|-. |..-|.+.+..++|-++|+.|.++ ..-....|...++.+.+..+
T Consensus 1528 --------------------------d~~~V~~~-L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1528 --------------------------DAYTVHLK-LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred --------------------------chHHHHHH-HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccH
Confidence 222 3444 889999999999999999999875 22466789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005580 403 GDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (690)
Q Consensus 403 ~~~A~~l~~~M~~~g~~Pd---~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l 479 (690)
-+.|..++.+..+. .|. +..-.-.+..-.+.|+.+.+..+|+.....- .--...|+..|+.=.+.|+.+.+..+
T Consensus 1580 ~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1580 AEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred HHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHH
Confidence 99999999876543 354 2222333444467899999999999987653 22457899999999999999999999
Q ss_pred HHHHHHcCCCCChh
Q 005580 480 LHKLRTSVRKVSPS 493 (690)
Q Consensus 480 l~~M~~~~~g~~p~ 493 (690)
|++.... ..+|-
T Consensus 1657 feRvi~l--~l~~k 1668 (1710)
T KOG1070|consen 1657 FERVIEL--KLSIK 1668 (1710)
T ss_pred HHHHHhc--CCChh
Confidence 9999999 77776
No 86
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.16 E-value=0.14 Score=47.73 Aligned_cols=91 Identities=10% Similarity=-0.100 Sum_probs=39.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (690)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (690)
-..+...|++++|...|+...... ..+...|..+-..+.+.|+.++|...|+...... ..+...+..+-.++.+.|+.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 334444444444444444443331 1133334444444444445555554444444321 12334444444444444555
Q ss_pred HHHHHHHHHHHHc
Q 005580 474 DRVYYLLHKLRTS 486 (690)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (690)
++|...|+.-...
T Consensus 109 ~eAi~~~~~Al~~ 121 (144)
T PRK15359 109 GLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 5555554444443
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.18 Score=52.62 Aligned_cols=225 Identities=15% Similarity=0.095 Sum_probs=129.6
Q ss_pred CcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCc
Q 005580 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVV 244 (690)
Q Consensus 165 ~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~ 244 (690)
+-+.|++|+-.+. ...|. .-.|.+| -|-+.+++.+|..+..++. -..|- --++++...+..| .
T Consensus 269 ngEgALqVLP~L~--------~~IPE-ARlNL~i-YyL~q~dVqeA~~L~Kdl~--PttP~----EyilKgvv~aalG-Q 331 (557)
T KOG3785|consen 269 NGEGALQVLPSLM--------KHIPE-ARLNLII-YYLNQNDVQEAISLCKDLD--PTTPY----EYILKGVVFAALG-Q 331 (557)
T ss_pred CCccHHHhchHHH--------hhChH-hhhhhee-eecccccHHHHHHHHhhcC--CCChH----HHHHHHHHHHHhh-h
Confidence 3445666665542 23344 3444444 4678899999999887653 12333 3344444432211 0
Q ss_pred ccCCCCchhhHHhHhhhhccccccccccCCCC-ccch-hhccccccccccccccCCChhhHHHHHHHHHHcCCCCCcccc
Q 005580 245 KPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (690)
Q Consensus 245 ~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty 322 (690)
.-+....+.-|...|. |...++.. |.+. --++-+. +--..++|+..-.++..+.-=.--|.+.|
T Consensus 332 e~gSreHlKiAqqffq--------lVG~Sa~ecDTIpGRQsmAs~------fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQ--------LVGESALECDTIPGRQSMASY------FFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred hcCcHHHHHHHHHHHH--------HhcccccccccccchHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 0112233556777773 54443444 4433 2222222 33334445555444444433222333333
Q ss_pred chhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcC
Q 005580 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL-TAVGRMAMSMG 401 (690)
Q Consensus 323 ~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty-n~LI~~~~~~g 401 (690)
| +-.+++-.|...+|.++|-......++ |..+| ..|.++|.+++
T Consensus 398 N----------------------------------~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 398 N----------------------------------LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred H----------------------------------HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 2 668889999999999999777655444 55566 45567889999
Q ss_pred ChHHHHHHHHHHHHCCCCCCcchHHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 005580 402 DGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (690)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (690)
+++.|++++-.|... .+..+.--+| +-|-+++++=-|-+.|++++.. .|+..-|
T Consensus 443 kP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred CchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 999999988665432 3444444444 5677889998888899888764 4555444
No 88
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.12 E-value=0.14 Score=58.03 Aligned_cols=225 Identities=8% Similarity=0.002 Sum_probs=155.7
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~ 238 (690)
.+.+.|-..+|..+|+.+ ..|.-+|.+|+..|+-.+|..+..+-.+ -+||...|..|.+..-
T Consensus 407 ll~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~- 468 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH- 468 (777)
T ss_pred HHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc-
Confidence 455778888999999999 8899999999999999999988887776 5789999998888776
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcC-CCC
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFS 317 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g-~~P 317 (690)
.---+++|.++++ ..+.+. -..++-+ ....+++.++.+.|+.-.+.. ..+
T Consensus 469 ---------d~s~yEkawElsn------~~sarA-----~r~~~~~---------~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 469 ---------DPSLYEKAWELSN------YISARA-----QRSLALL---------ILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred ---------ChHHHHHHHHHhh------hhhHHH-----HHhhccc---------cccchhHHHHHHHHHHHhhcCccch
Confidence 3344778888885 111110 0011111 234678888888886533221 111
Q ss_pred CccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 005580 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-ASLTAVGRM 396 (690)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~-~tyn~LI~~ 396 (690)
+ +|-. +=.+..+.++++.|.+-|..-.. ..||. -.||.+-.+
T Consensus 520 ~----------------------------------~wf~-~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 520 G----------------------------------TWFG-LGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTA 562 (777)
T ss_pred h----------------------------------HHHh-ccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHH
Confidence 1 1212 21234467788888888887664 45665 569999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 005580 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEEPELEALLRVSV 468 (690)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv-~pd~~ty~~Li~~~~ 468 (690)
|.+.++-.+|+..+.+-.+.+ .-+...|-.-+....+.|.+++|.+.+..|.+... ..|..+...++....
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 999999999999999988877 44566677777778899999999999988764311 124445555554443
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.03 E-value=1.2 Score=44.30 Aligned_cols=196 Identities=13% Similarity=-0.016 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccccccc
Q 005580 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (690)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~ 272 (690)
+.--|=-+|-+.|+...|..-+++..+.. +-+..+|..+-..|. +.|..+.|.+-|. .-+...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq----------~~Ge~~~A~e~Yr------kAlsl~ 99 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQ----------KLGENDLADESYR------KALSLA 99 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCChhhHHHHHH------HHHhcC
Confidence 34445567899999999999999998753 223456677777777 7788888888874 112111
Q ss_pred CCCCccch-hhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCCh
Q 005580 273 RDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (690)
Q Consensus 273 ~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~ 351 (690)
.+-.|+.- |.+. +|..|++++|...|++-... |+-.+- .
T Consensus 100 p~~GdVLNNYG~F---------LC~qg~~~eA~q~F~~Al~~---P~Y~~~----------------------------s 139 (250)
T COG3063 100 PNNGDVLNNYGAF---------LCAQGRPEEAMQQFERALAD---PAYGEP----------------------------S 139 (250)
T ss_pred CCccchhhhhhHH---------HHhCCChHHHHHHHHHHHhC---CCCCCc----------------------------c
Confidence 11112221 3333 56666666666666655432 111111 0
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 005580 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (690)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (690)
.||-+ +.-+..+.|+.+.|.+.|++-.+.... ...+.-.+.+...+.|+.-.|...++.....|. ++..+.-..|.-
T Consensus 140 ~t~eN-~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iri 216 (250)
T COG3063 140 DTLEN-LGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRI 216 (250)
T ss_pred hhhhh-hHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHH
Confidence 12223 222333556666666666655543211 123344455555555666666655555554443 555555555555
Q ss_pred HHhcCChHHHHHHHHHH
Q 005580 432 FCNNGDVDKACSVEEHM 448 (690)
Q Consensus 432 ~~k~g~~~~A~~l~~~M 448 (690)
--+.|+.+.|-+.=..+
T Consensus 217 ak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 217 AKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHhccHHHHHHHHHHH
Confidence 55555555555444433
No 90
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.1 Score=52.47 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=102.6
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----c
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k----~ 435 (690)
.-|++.|++++|++..... -..+....| +..+.+..+++-|.+.++.|.+- -+-.|.+-|-.++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~----~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG----ENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhcc----chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 4588999999999988762 223333333 33456778899999999999876 356677766666654 4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHcchHH
Q 005580 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKEA 507 (690)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~~~~ 507 (690)
+.+..|+-+|++|-++ ..|+..+.|-+..++...|++++|..++++...+... .|+ ..|.|......|+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 6799999999999664 7899999999999999999999999999999887333 245 45666555444443
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=95.98 E-value=1.3 Score=46.44 Aligned_cols=230 Identities=12% Similarity=-0.020 Sum_probs=146.3
Q ss_pred cCcchHhHHHHHHHhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005580 164 TNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 164 ~~~~~A~~vf~~m~~~g~~~~~~~~p~--~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~ 241 (690)
...+.+..-+.++..... ..|+ ...|..+=..+.+.|+.++|+..|++..+.. +-+...|+.+=..+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~---- 109 (296)
T PRK11189 40 LQQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLT---- 109 (296)
T ss_pred hHHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH----
Confidence 344556666666643321 1222 2345566667889999999999999988753 235778888888888
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (690)
..|+.++|...|+ ...+. .-.+...|..+-.. +...|++++|.+.|+.-.+. .|+...
T Consensus 110 ------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~g~~~eA~~~~~~al~~--~P~~~~ 167 (296)
T PRK11189 110 ------QAGNFDAAYEAFD-------SVLEL-DPTYNYAYLNRGIA------LYYGGRYELAQDDLLAFYQD--DPNDPY 167 (296)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 8899999999996 22221 11144556666666 78899999999999987764 233211
Q ss_pred cchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005580 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (690)
Q Consensus 322 y~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g 401 (690)
. .+....+...++.++|.+.|.+.... ..|+...+ .+ .....|
T Consensus 168 ~---------------------------------~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg 210 (296)
T PRK11189 168 R---------------------------------ALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLG 210 (296)
T ss_pred H---------------------------------HHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHcc
Confidence 1 10112234567899999999775543 23443222 22 223356
Q ss_pred ChHHHHHHHHHHHHC-CC----CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005580 402 DGDMAFDMVKRMKSL-GI----NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (690)
Q Consensus 402 ~~~~A~~l~~~M~~~-g~----~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (690)
+..++ +.+..+.+. .. .| ....|.-+-..+.+.|+.++|...|++..+.+ .||-+.+...+
T Consensus 211 ~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~~ 277 (296)
T PRK11189 211 KISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYAL 277 (296)
T ss_pred CCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHHH
Confidence 66555 355555432 11 11 22468888888999999999999999988765 34666665543
No 92
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.95 E-value=0.2 Score=46.59 Aligned_cols=122 Identities=15% Similarity=0.110 Sum_probs=86.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc--chHHHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFC 433 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~ty~~lI~~~~ 433 (690)
++..+ ..++...+.+.++.+....-.-. ....=.+-..+...|++++|...|+......-.|+. ...-.|-..+.
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 45555 48888999999999988642211 122233446788899999999999999887633322 23334566777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (690)
..|+.++|+..++....... ....+..+=+.|.+.|+.++|...|+.
T Consensus 97 ~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 97 QQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999999977543333 344566677888999999999998875
No 93
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.92 E-value=2.8 Score=47.45 Aligned_cols=292 Identities=10% Similarity=0.020 Sum_probs=172.9
Q ss_pred hhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005580 156 DNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQ-LRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (690)
Q Consensus 156 ~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~t-yn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~ 234 (690)
.++.+.+.+..++|.+.+..-+.+ .-|-+. --+--+.+.+.+++++|..+|..+... .||.+-|.-.+.
T Consensus 191 ~n~i~~E~g~~q~ale~L~~~e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 191 QNQILIEAGSLQKALEHLLDNEKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHcccHHHHHHHHHhhhhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHH
Confidence 455666888888888877765221 111122 234455678889999999999999875 488888887766
Q ss_pred HHHhcccCCcccCCCCchhhHH-hHhhhhccccccccccCCCCccchhhccccccccccccccCCCh-hhHHHHHHHHHH
Q 005580 235 LCSSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKEN 312 (690)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~-~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~ 312 (690)
.+.- +.-+..++. .+|... ++.-... .++-...-+ ......+ +...+++..+.+
T Consensus 261 ~~lg---------k~~d~~~~lk~ly~~l---s~~y~r~-e~p~Rlpls-----------vl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 261 KALG---------KIKDMLEALKALYAIL---SEKYPRH-ECPRRLPLS-----------VLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHH---------HHhhhHHHHHHHHHHH---hhcCccc-ccchhccHH-----------HhCcchhHHHHHHHHHHHhh
Confidence 6551 112223333 444311 0111110 010000011 1111222 445566777888
Q ss_pred cCCC---CCccccc--------hhhhhhccc--cccCCCchhhhhcCC-CCChhhhHH-HHHHHHHhccCHHHHHHHHHH
Q 005580 313 LGQF---SNGHMKL--------NSQLLDGRS--NLERGPDDQSRKKDW-SIDNQDADE-IRLSEDAKKYAFQRGFEIYEK 377 (690)
Q Consensus 313 ~g~~---Pd~~ty~--------~~~li~g~~--~~a~~~~~~m~~~g~-~pd~~tyn~-~lI~~~~k~g~~~~A~~lf~~ 377 (690)
+|+. +|..++. ...++..|. ......|...-...+ .|....|.. .++..|-+.|+++.|...++.
T Consensus 317 Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 317 KGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred cCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8854 4555554 011222221 111112211111113 344433433 356788899999999999998
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 005580 378 MCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (690)
Q Consensus 378 M~~~g~~pd~~-tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd 456 (690)
-... .|+.+ -|-+=.+.++.+|++++|..++++-.+... ||...=+--.....++.++++|.++.....+.|. +
T Consensus 397 AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~ 471 (700)
T KOG1156|consen 397 AIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--G 471 (700)
T ss_pred Hhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--c
Confidence 7764 46543 455666889999999999999999887753 7777666777778899999999999999888775 4
Q ss_pred HHHHHHHH----------HHHHHcCChHHHHHHHHHHHHc
Q 005580 457 EPELEALL----------RVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 457 ~~ty~~Li----------~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+-+-+-+ .+|.+.|++..|++=|+.+...
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 43333332 3456777777777766666554
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.92 E-value=0.55 Score=46.55 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=111.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNG 436 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g 436 (690)
|--+|...|++..|.+-+++-.+... -+.-+|.++...|-+.|+.+.|.+-|+.-.+. .|+- ..-|..=.-+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 44689999999999999999988532 24578999999999999999999999987654 3433 33444444579999
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHcchHHHHhh
Q 005580 437 DVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLG 511 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~~~~~~~~a~ 511 (690)
+.++|...|++....--.| -..||.-+--+..+.|+.+.|...|++-.+......|.....-...++.+....|.
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999987652222 23466666667789999999999999998884444444444455555555544433
No 95
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.89 E-value=0.12 Score=41.98 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (690)
+|..+...+...|++++|..++++..+.. ..+...+..+-..+...|+.++|.+.|+...... ..+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567778888999999999999987652 2233677778888889999999999999987754 334467888889999
Q ss_pred HcCChHHHHHHHHHHHHc
Q 005580 469 EAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (690)
..|+.++|...+.+..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887654
No 96
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.86 E-value=0.41 Score=49.56 Aligned_cols=220 Identities=7% Similarity=-0.092 Sum_probs=150.7
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcc
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCSSAA 240 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll-~~~~~~~ 240 (690)
+.+...+|.+-|..-.++ .|-+.||-.|-.+|.+-.++..|+.+|.+-.+. .|-.+||-.=+ ..+-
T Consensus 235 rLgm~r~AekqlqssL~q--------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e--- 301 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSLTQ--------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE--- 301 (478)
T ss_pred HhcChhhhHHHHHHHhhc--------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH---
Confidence 556778888888876433 233368888999999999999999999887643 46666664322 2222
Q ss_pred cCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCcc
Q 005580 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (690)
Q Consensus 241 ~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (690)
.-++.++|.++++ +..+. .-.|+..-..+-.+ |--.++.+.|+..++++.+.|+..-.
T Consensus 302 -------am~~~~~a~~lYk-------~vlk~-~~~nvEaiAcia~~------yfY~~~PE~AlryYRRiLqmG~~spe- 359 (478)
T KOG1129|consen 302 -------AMEQQEDALQLYK-------LVLKL-HPINVEAIACIAVG------YFYDNNPEMALRYYRRILQMGAQSPE- 359 (478)
T ss_pred -------HHHhHHHHHHHHH-------HHHhc-CCccceeeeeeeec------cccCCChHHHHHHHHHHHHhcCCChH-
Confidence 3467888888885 22221 11145555556666 88889999999999999999864222
Q ss_pred ccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHH
Q 005580 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAM 398 (690)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~--~tyn~LI~~~~ 398 (690)
-|++ +=-+|.-.+++|-++--|.+....--.|+. ..|-.|=....
T Consensus 360 --------------------------------Lf~N-igLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 360 --------------------------------LFCN-IGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV 406 (478)
T ss_pred --------------------------------HHhh-HHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE
Confidence 2223 323344556788888888877654444443 23555555566
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005580 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (690)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~ 450 (690)
-.||+..|.+.|+-..... .-+...||.|----.+.|++++|..+++...+
T Consensus 407 ~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred eccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7899999999998766553 23456788887778899999999999987654
No 97
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.84 E-value=0.24 Score=44.99 Aligned_cols=98 Identities=8% Similarity=-0.042 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005580 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (690)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (690)
......+...+.+.|+.++|.+.|+.....+ ..+...|..+-..+.+.|+.++|..+++...+.+ ..+...+..+-..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3446667778889999999999999987764 2366777888888889999999999999887764 4456777777788
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 005580 467 SVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (690)
|...|+.++|...|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998887
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.78 E-value=0.53 Score=46.35 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=97.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcchHHHHHHHH-HhcCC--hHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVF-CNNGD--VDK 440 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~-~k~g~--~~~ 440 (690)
.++.+++...++...... +.|...|..|-..|...|++++|...|+...+.. | |...+..+-.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 445566666666655543 4578889999999999999999999999877653 4 455666666554 56677 599
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHH
Q 005580 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIA 499 (690)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~ 499 (690)
|.+++++..+..-. +...+..|-..+.+.|++++|...++++.+. .+..+ -+.+|.
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i~ 185 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLVE 185 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHHH
Confidence 99999999886432 6677788888889999999999999999887 33333 555563
No 99
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.76 E-value=0.085 Score=57.38 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=93.5
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
+...++++.|..+|+++.+.. |++... |...+...++-.+|.+
T Consensus 179 l~~t~~~~~ai~lle~L~~~~--pev~~~-----------------------------------LA~v~l~~~~E~~AI~ 221 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD--PEVAVL-----------------------------------LARVYLLMNEEVEAIR 221 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC--CcHHHH-----------------------------------HHHHHHhcCcHHHHHH
Confidence 566788999999999998774 443222 5566666778889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHH
Q 005580 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHML 449 (690)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~~~~A~~l~~~M~ 449 (690)
++++.... .+-|....+.-.+-|.+.++.+.|+++.+++... .|+. .+|..|..+|.+.|+++.|+..++.|.
T Consensus 222 ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 222 LLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99988864 2346677777777888999999999999998775 5666 499999999999999999999998765
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.76 E-value=1 Score=45.25 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=61.1
Q ss_pred cCHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCcchH
Q 005580 366 YAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSY 425 (690)
Q Consensus 366 g~~~~A~~lf~~M~~~g~~pd~-~ty-----------------n~LI~~~~~~g~~~~A~~l~~~M~~~g--~~Pd~~ty 425 (690)
|+.++|.+.|+...... |+. ..+ -.+-..|.+.|++++|...++...... -......+
T Consensus 129 ~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~ 206 (235)
T TIGR03302 129 TAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEAL 206 (235)
T ss_pred HHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHH
Confidence 56777777777776542 221 111 134566788999999999999987662 11234678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 005580 426 GPALSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 426 ~~lI~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
..+..++.+.|+.++|...++.+...
T Consensus 207 ~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 207 ARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999999999988654
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.76 E-value=0.52 Score=57.20 Aligned_cols=221 Identities=10% Similarity=0.049 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLG---QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~-G~~pd---~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~ 267 (690)
..|-.-|......++.+.|.+++++.... +++-. .-.|.++++.-. --|.-+...++|.
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn----------~yG~eesl~kVFe------- 1521 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN----------AYGTEESLKKVFE------- 1521 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH----------hhCcHHHHHHHHH-------
Confidence 56666666666666666666666666532 22211 123334444333 2233334444553
Q ss_pred cccccCCCCccch-hhccccccccccccccCCChhhHHHHHHHHHHc-CCCCCccccchhhhhhccccccCCCchhhhhc
Q 005580 268 ELGDSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL-GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (690)
Q Consensus 268 em~~~~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~-g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~ 345 (690)
+.. ..-|..+ |..|..- |.+.+.+++|.++|+.|.++ |..+-+++
T Consensus 1522 RAc---qycd~~~V~~~L~~i------y~k~ek~~~A~ell~~m~KKF~q~~~vW~------------------------ 1568 (1710)
T KOG1070|consen 1522 RAC---QYCDAYTVHLKLLGI------YEKSEKNDEADELLRLMLKKFGQTRKVWI------------------------ 1568 (1710)
T ss_pred HHH---HhcchHHHHHHHHHH------HHHhhcchhHHHHHHHHHHHhcchhhHHH------------------------
Confidence 111 0113333 6666666 77777777777777777654 21222211
Q ss_pred CCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcch
Q 005580 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (690)
Q Consensus 346 g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 424 (690)
. ..+.+.+..+-+.|..++.+..+.=.+- -+-...-.+..=.+.|+.+.+..+|+..... ..-..-.
T Consensus 1569 ----------~-y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDl 1636 (1710)
T KOG1070|consen 1569 ----------M-YADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDL 1636 (1710)
T ss_pred ----------H-HHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhH
Confidence 1 3455555566666666666554421111 1122233333445566777776677666554 2224455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChH
Q 005580 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGD 474 (690)
Q Consensus 425 y~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~--~ty~~Li~~~~~~g~~~ 474 (690)
|+..|+.=.++|+.+.+..+|++....++.|-- ..|.-.|..=-..|+-.
T Consensus 1637 W~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1637 WSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 677777777777777777777776666665532 34555555444445443
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.71 E-value=0.17 Score=57.12 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=77.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+-+-|+..|+++.|.++|-+-- .++-.|++|.++|+|++|+++-.+. .|-...+..|-+--.-+-+.|+
T Consensus 771 iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcc
Confidence 6688899999999999987642 3677889999999999999887553 3444556667666666777888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005580 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (690)
+.+|.+++-.+ -.||. -|..|-+.|..++.+++..+-
T Consensus 840 f~eaeqlyiti----~~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 840 FAEAEQLYITI----GEPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred hhhhhheeEEc----cCchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 88888877544 23443 467788888888777776554
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.65 E-value=0.25 Score=43.32 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=42.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 005580 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPEEPELEALLR 465 (690)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv--~pd~~ty~~Li~ 465 (690)
.+...+.+.|++++|.+.|..+.... |+ ...+..+-..+.+.|+.+.|...|+.+....- ......+..+-.
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444444555555555555554331 21 12333344455555555555555555543210 011233444444
Q ss_pred HHHHcCChHHHHHHHHHHHHc
Q 005580 466 VSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+.+.|+.++|...++++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 455555555555555555554
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.64 E-value=0.3 Score=45.40 Aligned_cols=121 Identities=9% Similarity=0.024 Sum_probs=93.6
Q ss_pred CchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005580 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (690)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (690)
+......+.+..|...+.. +-..+...|++++|...|+...... +.+...|..+-..+.+.|++++|...|+......
T Consensus 11 ~~~~~~~~al~~~p~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 11 IPEDILKQLLSVDPETVYA-SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred CHHHHHHHHHHcCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4445555544444444444 5577889999999999999988754 3477889999999999999999999999998753
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005580 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (690)
Q Consensus 418 ~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (690)
..+...+..+-.++.+.|+.++|...|+...+ +.|+...|..+
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~ 131 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEI 131 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHH
Confidence 34667888888899999999999999999876 45666555533
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.54 Score=47.52 Aligned_cols=121 Identities=18% Similarity=0.122 Sum_probs=92.8
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 005580 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (690)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g 436 (690)
.+.|..+++-|.+.++.|.+- -+..|.+-|..++.+ .+.+.+|+-+|++|.++ ..|+.-+-|-...++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 344666889999999999874 366788877777765 46789999999999775 6789999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHHc
Q 005580 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLRTS 486 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~-~A~~ll~~M~~~ 486 (690)
++++|..++++...+.-. +..|..-+|-.-...|... -..+.+..++..
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999999999877533 4555555555555566554 455677777766
No 106
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.45 E-value=0.1 Score=47.38 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005580 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (690)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (690)
|+.++.++|-++++.|+++....+++.. -|+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4556677777777777777666666432 133222110 0000 1122346677777777777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHH
Q 005580 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWF 502 (690)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~ 502 (690)
+|+..|++..|+++++...+...-+-|. +|..|..|+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 7777777777777777776653212222 666655554
No 107
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.40 E-value=4.7 Score=44.07 Aligned_cols=282 Identities=10% Similarity=0.044 Sum_probs=169.9
Q ss_pred hhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005580 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (690)
Q Consensus 161 ~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~ 240 (690)
+..|++..|.++|+.-. ...|+...|++.|+.=.+...++.|..+|++..- +.|++.+|---..-=-
T Consensus 152 E~LgNi~gaRqiferW~--------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~--- 218 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWM--------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEE--- 218 (677)
T ss_pred HHhcccHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHH---
Confidence 35678889999998852 4578889999999999999999999999999875 4588888876665555
Q ss_pred cCCcccCCCCchhhHHhHhhhhccccccccccCCCC--ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCC
Q 005580 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (690)
Q Consensus 241 ~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (690)
++|.+..|..+|. ..++..|-. +...+++.-.- -.....++.|.-+|.--... .|.
T Consensus 219 -------k~g~~~~aR~Vye-------rAie~~~~d~~~e~lfvaFA~f------Ee~qkE~ERar~iykyAld~--~pk 276 (677)
T KOG1915|consen 219 -------KHGNVALARSVYE-------RAIEFLGDDEEAEILFVAFAEF------EERQKEYERARFIYKYALDH--IPK 276 (677)
T ss_pred -------hcCcHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--cCc
Confidence 7888888888884 222210111 11122222111 11223344444444432221 222
Q ss_pred ccccchhhhhhccc-----------------cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC
Q 005580 319 GHMKLNSQLLDGRS-----------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (690)
Q Consensus 319 ~~ty~~~~li~g~~-----------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (690)
..+- -|..+|. ...+.-+..++.. -.-|-.+|-. .+..--..|+.+...++|+.....
T Consensus 277 ~rae---eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfd-ylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 277 GRAE---ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFD-YLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred ccHH---HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHH-HHHHHHhcCCHHHHHHHHHHHHcc
Confidence 2221 1222222 0111122222221 1223334544 455555668888889999888764
Q ss_pred CCCCCH-H-HHHHHHH-----HH---HhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHH----hcCChHHHHHHHHH
Q 005580 382 EVPMNE-A-SLTAVGR-----MA---MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC----NNGDVDKACSVEEH 447 (690)
Q Consensus 382 g~~pd~-~-tyn~LI~-----~~---~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~----k~g~~~~A~~l~~~ 447 (690)
++|-. . -|---|- +| ....+++.+.++++...+. +.-..+||.-+=-.|+ ++.++..|.+++-.
T Consensus 352 -vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 352 -VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44421 1 1111111 11 2367788888888887763 5455677776655554 56788888888775
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 448 M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
. -|..|-.-+|...|..=.+.+.+|....|+.+..+-
T Consensus 430 A--IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 430 A--IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred H--hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4 367788888888888888888888888888888876
No 108
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.37 E-value=0.15 Score=51.70 Aligned_cols=100 Identities=22% Similarity=0.197 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC----------------hHHHHH
Q 005580 385 MNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD----------------VDKACS 443 (690)
Q Consensus 385 pd~~tyn~LI~~~~~-----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~----------------~~~A~~ 443 (690)
-|-.+|-+.+.-|.. .+.++--..-++.|++.|+.-|..+|+.||+.+=|..- -+-|..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 355555555555543 35566666667777777887788888887777655432 244789
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Q 005580 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLR 484 (690)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~-~A~~ll~~M~ 484 (690)
++++|+.+|+.||-.+-..||.++.+.+-.- +..+++--|.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 9999999999999999999999998887543 4555555554
No 109
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=1.2 Score=49.33 Aligned_cols=121 Identities=8% Similarity=0.056 Sum_probs=60.5
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCc----chHHHHHHHHHh
Q 005580 362 DAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRL----RSYGPALSVFCN 434 (690)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~----~ty~~lI~~~~k 434 (690)
|.+.+..+.|.++|.+-.. +.| |...++=+=-..-..+.+.+|..+|+.-... .+.+.. -+++.|=++|-+
T Consensus 390 y~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 4445555666666655443 223 3344444443444455566666665544311 111111 123444445555
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
.+..++|...|+.-... ..-|..||.++=-.|...|.++.|.+.|++-..
T Consensus 468 l~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 66666666666655443 223555555555555566666666666665543
No 110
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.31 E-value=0.52 Score=41.23 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=74.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cchHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSV 431 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~--~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~~ 431 (690)
+...+.+.|+.++|.+.|+++....- ......+..+...+.+.|++++|.+.|+...... |+ ...+..+-..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHHHH
Confidence 55677889999999999999987532 1123466778899999999999999999988652 33 3457777788
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 005580 432 FCNNGDVDKACSVEEHMLEHG 452 (690)
Q Consensus 432 ~~k~g~~~~A~~l~~~M~~~g 452 (690)
+.+.|+.++|...++++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999998874
No 111
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.28 E-value=0.16 Score=52.87 Aligned_cols=194 Identities=10% Similarity=-0.000 Sum_probs=127.8
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc---------cccCCCchhhhhcCCCCChhhhHHHHHHHHHh
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS---------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~---------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (690)
|.+.+++.+|..+.+++.- ..|-..... +.+..++. +.|...|.-.-..+..-|.+.-.-.+-+.+.-
T Consensus 295 yL~q~dVqeA~~L~Kdl~P--ttP~EyilK-gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDP--TTPYEYILK-GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred ecccccHHHHHHHHhhcCC--CChHHHHHH-HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 7788888888888877632 223222222 11111111 23444444444555555554444445566667
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHH-HHHHhcCChHHHHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACS 443 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~k~g~~~~A~~ 443 (690)
..++++.+-.++..+.-=..-|.+-|| +..+++..|...+|+++|-.+....+ -|..+|-+++ .+|.+++..+.||.
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHH
Confidence 778888888888888765556666666 67889999999999999977654444 3667776665 57789999999998
Q ss_pred HHHHHHhCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 005580 444 VEEHMLEHGVYPEEPELEAL-LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (690)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~L-i~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (690)
++-.|... .+..+.--| -.-|-+++.+--|-+-|+++... .|+|+-|.-
T Consensus 450 ~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeG 499 (557)
T KOG3785|consen 450 MMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEG 499 (557)
T ss_pred HHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCC
Confidence 88766432 233333333 35677889998888999999888 888876643
No 112
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=3.1 Score=45.60 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=88.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCcch--HHHHHHHH
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRS--YGPALSVF 432 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-----~~Pd~~t--y~~lI~~~ 432 (690)
.+.-|.+++++++..|++-+++ ++-..-.||-.-..+...++++.|.+.++...+.- +..+... --.+|-.-
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 3445777999999999998876 44456778888899999999999999998766431 1111111 11111111
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 433 ~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
-.+++..|.+++....+..-+ ....|.+|-..-.+.|++++|+++|++-..-
T Consensus 515 -wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 515 -WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred -hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 348999999999988664321 3467888888889999999999999986654
No 113
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=3.3 Score=45.15 Aligned_cols=125 Identities=10% Similarity=-0.021 Sum_probs=107.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+-+-|.-.++.++|...|+.-.+-+. -....|+.+=+-|....+...|.+-++...+- ++-|-+.|-.|=.+|.-.+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcc
Confidence 44778888899999999999887542 23467888888999999999999999988776 45688999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 438 VDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..-|+-.|++... ++| |...|.+|=++|.+.+++++|.+-|.+-..-
T Consensus 414 h~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 414 HFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999998765 455 7899999999999999999999999988776
No 114
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.17 E-value=0.2 Score=45.50 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=46.2
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCC
Q 005580 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGK 472 (690)
Q Consensus 417 g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~ 472 (690)
.+.|+..+-.+++.+|+.+|++..|+++.+...+. ++..+..+|..|+.-....-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999887654 788888999999887654443
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.01 E-value=3.7 Score=49.31 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=83.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+-.+|-+.|+.++|..+++++.+.. +-|....|-+-..|+.. ++++|.+++.+.... |....+
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq 184 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQ 184 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhc
Confidence 6678888899999999999998876 45788889999999998 999999998876655 333344
Q ss_pred hHHHHHHHHHHHh------------------C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 438 VDKACSVEEHMLE------------------H-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 438 ~~~A~~l~~~M~~------------------~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..++.++|.++.. . |..--+.++-.|...|-+..+++++..+|+...+.
T Consensus 185 ~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 185 YVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred chHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 4444444444433 2 33334556666677888888999999999999887
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=1.9 Score=44.24 Aligned_cols=276 Identities=11% Similarity=-0.010 Sum_probs=153.3
Q ss_pred hhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHh
Q 005580 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV--LLYLCSS 238 (690)
Q Consensus 161 ~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~--Ll~~~~~ 238 (690)
.+..+..+|.+++..--+... + +....+.|=.+|-...++..|-..|+++-.. -|...-|.. --+.|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p-~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY-- 89 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSP-R------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY-- 89 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCc-c------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH--
Confidence 356678888888777643321 1 3366777777888888888898888887643 344333321 11111
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccCCCCc-cchhhccccccccccccccCCChhhHHHHHHHHHHcCCCC
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN-NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d-~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (690)
+++...+|+++.. .|.++..+.+ ++---+-| .-+.+++..+..+.++....|-
T Consensus 90 ---------~A~i~ADALrV~~-------~~~D~~~L~~~~lqLqaAI--------kYse~Dl~g~rsLveQlp~en~-- 143 (459)
T KOG4340|consen 90 ---------KACIYADALRVAF-------LLLDNPALHSRVLQLQAAI--------KYSEGDLPGSRSLVEQLPSENE-- 143 (459)
T ss_pred ---------HhcccHHHHHHHH-------HhcCCHHHHHHHHHHHHHH--------hcccccCcchHHHHHhccCCCc--
Confidence 3455777777774 2222101100 11111111 1244555555555555443220
Q ss_pred CccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005580 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRM 396 (690)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~LI~~ 396 (690)
- | +-+. .-.-.-+.|+.+.|.+-|+...+- |..| ...||.-+.-
T Consensus 144 ----A---------------------------d--~~in-~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH 188 (459)
T KOG4340|consen 144 ----A---------------------------D--GQIN-LGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH 188 (459)
T ss_pred ----c---------------------------c--hhcc-chheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH
Confidence 0 0 0001 111234788899999999887764 5554 5678876654
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC-------------CCcch--------HHHHHHH-------HHhcCChHHHHHHHHHH
Q 005580 397 AMSMGDGDMAFDMVKRMKSLGIN-------------PRLRS--------YGPALSV-------FCNNGDVDKACSVEEHM 448 (690)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~-------------Pd~~t--------y~~lI~~-------~~k~g~~~~A~~l~~~M 448 (690)
| +.|+.+.|+++..++.++|++ ||+.+ -+.++.+ +.+.|+.+.|.+-+-+|
T Consensus 189 y-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 189 Y-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred H-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 4 567888999999988887753 34322 2334433 34678888888888888
Q ss_pred HhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHHcchHHHHhh
Q 005580 449 LEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA-DVIAKWFNSKEAARLG 511 (690)
Q Consensus 449 ~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~-~~I~~~~~~~~~~~a~ 511 (690)
.-+ .-..|.+|..-+--. -..+++.+..+-+..+.... .++|+|+ +++.-+|+.....-|.
T Consensus 268 PPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 268 PPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred CCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHH
Confidence 533 345577776544222 12344444444455555442 3444454 6677778777654443
No 117
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.66 E-value=0.05 Score=45.32 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=40.8
Q ss_pred ccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChHHHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKAC 442 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~~~~A~ 442 (690)
.|+++.|..+|+++.+.... |+...+-.+..+|.+.|++++|..+++. .+ ..|+. ...-.+-.+|.+.|+.++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666654321 2333344466666666666666666665 11 11211 22223344555666666666
Q ss_pred HHHHH
Q 005580 443 SVEEH 447 (690)
Q Consensus 443 ~l~~~ 447 (690)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66653
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.56 E-value=1.8 Score=44.47 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=103.9
Q ss_pred CCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhh
Q 005580 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (690)
Q Consensus 248 k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~l 327 (690)
+.|+.+.|..-|. +...-+|..+.+.||.-+.- -+.++.+.|.+...|+.++|++-.. -++.|..
T Consensus 156 kegqyEaAvqkFq-------aAlqvsGyqpllAYniALaH-------y~~~qyasALk~iSEIieRG~r~HP-ElgIGm~ 220 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQ-------AALQVSGYQPLLAYNLALAH-------YSSRQYASALKHISEIIERGIRQHP-ELGIGMT 220 (459)
T ss_pred ccccHHHHHHHHH-------HHHhhcCCCchhHHHHHHHH-------HhhhhHHHHHHHHHHHHHhhhhcCC-ccCccce
Confidence 8899999999994 44444477788889987654 4678899999999999999965211 1110011
Q ss_pred hhccccccCCCchhhhhcCCCCChhh-hHHHHH-------HHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 005580 328 LDGRSNLERGPDDQSRKKDWSIDNQD-ADEIRL-------SEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAM 398 (690)
Q Consensus 328 i~g~~~~a~~~~~~m~~~g~~pd~~t-yn~~lI-------~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~LI~~~~ 398 (690)
.+|-- ++.+ -|..+ .-+.++ .-+-+.|+.+.|.+-+-+|.-+ .-..|.+|...+.-.-.
T Consensus 221 tegiD--vrsv----------gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~ 288 (459)
T KOG4340|consen 221 TEGID--VRSV----------GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM 288 (459)
T ss_pred eccCc--hhcc----------cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc
Confidence 11100 0000 01100 001122 2345678888888888888643 23467777765533222
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M 448 (690)
.+++.+..+-+.-+...+- --..||..++--|||+.-++.|-.++.+=
T Consensus 289 -~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 289 -DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred -cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 2344444444444433321 23478999999999999999999888764
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.55 E-value=0.68 Score=52.49 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=51.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (690)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (690)
|.+...+..|.+|+.+++.++.... ..--|.-+-+.|+..|+++.|.++|-+- ..++--|+.|.++|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 4445556777777777777766532 2334666667777777777777777653 2345567777777777
Q ss_pred HHHHHHHHHH
Q 005580 474 DRVYYLLHKL 483 (690)
Q Consensus 474 ~~A~~ll~~M 483 (690)
++|.++-.+.
T Consensus 808 ~da~kla~e~ 817 (1636)
T KOG3616|consen 808 EDAFKLAEEC 817 (1636)
T ss_pred HHHHHHHHHh
Confidence 7777765443
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.44 E-value=3.2 Score=50.78 Aligned_cols=272 Identities=8% Similarity=-0.012 Sum_probs=159.1
Q ss_pred hhhcCcchHhHHHHHHHhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHH
Q 005580 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIK-LGQYHYNVLLY 234 (690)
Q Consensus 161 ~~~~~~~~A~~vf~~m~~~g~~~~~~~~p-~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~----G~~-pd~~tyn~Ll~ 234 (690)
...++.++|...+++-...- +.. ..+ -...++.+-..+...|++++|...+.+.... |-. +-..+++.+-.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL--PLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC--CCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 35678888998888864421 111 111 1234556666677899999999999988742 211 11223333344
Q ss_pred HHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCc----cchhhccccccccccccccCCChhhHHHHHHHH
Q 005580 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (690)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d----~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (690)
.+. ..|++++|...+... .+.....+..+ ...+..+-.. +...|++++|...+.+.
T Consensus 540 ~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 540 ILF----------AQGFLQAAYETQEKA----FQLIEEQHLEQLPMHEFLLRIRAQL------LWEWARLDEAEQCARKG 599 (903)
T ss_pred HHH----------HCCCHHHHHHHHHHH----HHHHHHhccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHh
Confidence 444 578999998887411 11212112211 1223333333 55669999999988876
Q ss_pred HHcCC--CCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----CCC
Q 005580 311 ENLGQ--FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVP 384 (690)
Q Consensus 311 ~~~g~--~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g~~ 384 (690)
....- .|.. ....+.. +-..+...|+.++|.+.+++.... +..
T Consensus 600 l~~~~~~~~~~------------------------------~~~~~~~-la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 600 LEVLSNYQPQQ------------------------------QLQCLAM-LAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred HHhhhccCchH------------------------------HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 54311 0110 0111222 445667889999999999887542 111
Q ss_pred CCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC
Q 005580 385 MNEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP 455 (690)
Q Consensus 385 pd~~ty--n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---~ty~~lI~~~~k~g~~~~A~~l~~~M~~~----gv~p 455 (690)
+..... ...+..+...|+.+.|.+++............ ..+..+-.++...|+.++|..++++.... |..+
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 111011 11234455689999999998775432111111 11345566778889999999999887653 4333
Q ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 456 E-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 456 d-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+ ..++..+-.++.+.|+.++|...|.+..+.
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 245556667778999999999999998775
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.42 E-value=0.8 Score=42.44 Aligned_cols=53 Identities=9% Similarity=0.114 Sum_probs=32.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKR 412 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~ 412 (690)
|-..+...|++++|+..++....... ....+..+=+.|.+.|+.++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44556677777777777765433222 233455555667777777777777654
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.34 E-value=8.8 Score=46.95 Aligned_cols=276 Identities=13% Similarity=0.016 Sum_probs=153.1
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYL 235 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~--tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~----~tyn~Ll~~ 235 (690)
..++.++|..++......-...+....|... ....+-..+...|++++|...+++....--..+. ...+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4567778877777764321111111112211 1112223446789999999999998753111122 222333333
Q ss_pred HHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCc--cchhhccccccccccccccCCChhhHHHHHHHHHHc
Q 005580 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN--NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (690)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d--~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (690)
+. ..|++++|...+... .+.....|-.. ...++.+-.. +...|++++|...+++....
T Consensus 501 ~~----------~~G~~~~A~~~~~~a----l~~~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 501 HH----------CKGELARALAMMQQT----EQMARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HH----------HcCCHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH
Confidence 33 578999998888411 01111111111 1223333334 67789999999998876542
Q ss_pred CC---CCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC--CCCC--C
Q 005580 314 GQ---FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM--N 386 (690)
Q Consensus 314 g~---~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--g~~p--d 386 (690)
.- .++... ....+.. +-..+...|++++|...+++.... ...+ .
T Consensus 561 ~~~~~~~~~~~----------------------------~~~~~~~-la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 561 IEEQHLEQLPM----------------------------HEFLLRI-RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHhccccccH----------------------------HHHHHHH-HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 10 000000 0111222 334456679999999999887542 1112 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCcchH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---H
Q 005580 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-----GPALSVFCNNGDVDKACSVEEHMLEHGVYPE---E 457 (690)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty-----~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd---~ 457 (690)
...+..+...+...|+.++|.+.+.+.....- ......+ ...+..+...|+.+.|.+++........... .
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 34455566678889999999999988754311 0111111 1122445568999999999877554221111 1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..+..+-.++...|+.++|..++.+....
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12345666778899999999999987653
No 123
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=94.29 E-value=12 Score=42.58 Aligned_cols=319 Identities=11% Similarity=0.080 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL--GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p--d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em 269 (690)
..|-.=-.+|-+.|.+-.+..+......-|+.- -..||+.--..|. +.+.++-|..+|... +
T Consensus 480 dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~----------k~~~~~carAVya~a------l 543 (913)
T KOG0495|consen 480 DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE----------KRPAIECARAVYAHA------L 543 (913)
T ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH----------hcchHHHHHHHHHHH------H
Confidence 666666677777777777777777776666542 2356666666666 556666666666410 1
Q ss_pred cccCCCC-ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhcc-------ccccCCCchh
Q 005580 270 GDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGR-------SNLERGPDDQ 341 (690)
Q Consensus 270 ~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~-------~~~a~~~~~~ 341 (690)
. -++ +...|.-.... --..|..+....+|++....- |-+-.+ -|+-+- ...|+.++..
T Consensus 544 q---vfp~k~slWlra~~~------ek~hgt~Esl~Allqkav~~~--pkae~l---wlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 544 Q---VFPCKKSLWLRAAMF------EKSHGTRESLEALLQKAVEQC--PKAEIL---WLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred h---hccchhHHHHHHHHH------HHhcCcHHHHHHHHHHHHHhC--CcchhH---HHHHHHHHHhcCCcHHHHHHHHH
Confidence 1 112 44445555444 445666666666776665431 211111 000000 0001111111
Q ss_pred hhhcCCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005580 342 SRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (690)
Q Consensus 342 m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (690)
.... -|+. ..|-. -+.--..+..+++|..+|.+-.. ..|+.-.|.--+..---.+..++|.+++++..+. -|
T Consensus 610 af~~--~pnseeiwla-avKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp 682 (913)
T KOG0495|consen 610 AFEA--NPNSEEIWLA-AVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FP 682 (913)
T ss_pred HHHh--CCCcHHHHHH-HHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CC
Confidence 1110 1111 11212 33444445555556555555443 3344444444444444445555666655554433 23
Q ss_pred CcchHHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HH-H
Q 005580 421 RLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TA-D 496 (690)
Q Consensus 421 d~~ty~~lI-~~~~k~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~-~ 496 (690)
+-.-+-.++ ..+-..++++.|.+.|..=. ...|+ +..|-.|-+.=-+.|.+.+|..+|++-+-+ .|... .| .
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~--k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle 758 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGT--KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLE 758 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhcc--ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHH
Confidence 322211111 12222333344433333211 12344 445555555556788999999999998877 55544 45 4
Q ss_pred HHHHHHcchHHHHhhcccchhhHHHHHhh---hcCCccccccccCCCcceEEeeeecCCCccccc
Q 005580 497 VIAKWFNSKEAARLGKKKWNESLIKDTME---NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCC 558 (690)
Q Consensus 497 ~I~~~~~~~~~~~a~~~~~~~~~v~ea~~---~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~c 558 (690)
.|..-.+.|....|. ..+..|+. .+|-+|-+-.|.--.|..-|- ++..--.|..-
T Consensus 759 ~Ir~ElR~gn~~~a~------~lmakALQecp~sg~LWaEaI~le~~~~rkTk-s~DALkkce~d 816 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAE------LLMAKALQECPSSGLLWAEAIWLEPRPQRKTK-SIDALKKCEHD 816 (913)
T ss_pred HHHHHHHcCCHHHHH------HHHHHHHHhCCccchhHHHHHHhccCcccchH-HHHHHHhccCC
Confidence 477767776655554 23444443 566677777777667776555 34433345443
No 124
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.09 E-value=1.6 Score=41.61 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLR 465 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~ 465 (690)
.|..+-..+...|++++|...|++..+..-.|. ...|..+-..+.+.|+.++|...+++..+. .| +...+..+-.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 344455555555666666666665544321111 234555555555666666666666555542 22 2333333444
Q ss_pred HHHHcCC--------------hHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 005580 466 VSVEAGK--------------GDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (690)
Q Consensus 466 ~~~~~g~--------------~~~A~~ll~~M~~~~~g~~p~t~~~I~~~ 501 (690)
.|...|+ +++|.+++++.... .|+.+..+..|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~ 160 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNW 160 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHH
Confidence 4444443 45677777766654 46545444444
No 125
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.03 E-value=0.14 Score=51.83 Aligned_cols=84 Identities=11% Similarity=-0.006 Sum_probs=66.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHHHHHHHHHCCCCCCcchHHHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------------DGDMAFDMVKRMKSLGINPRLRSYGPA 428 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g----------------~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (690)
.+.++-...-++.|++.|+.-|..+|+.||+.+=|.. +-+=+++++++|+..|+.||..+-..|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 4567777788899999999999999999999765532 223478999999999999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHHH
Q 005580 429 LSVFCNNGDV-DKACSVEEHM 448 (690)
Q Consensus 429 I~~~~k~g~~-~~A~~l~~~M 448 (690)
|++|.+.+.. .+-+++.--|
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHhccccccHHHHHHHHHhh
Confidence 9999988764 2333443334
No 126
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.93 E-value=0.11 Score=43.21 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=57.9
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHH
Q 005580 400 MGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (690)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~ 477 (690)
.|+++.|+.+++++.+..- .|+...+-.+-.+|.+.|+.++|..+++. .+ ..|+. ...-.+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5789999999999987732 22444455578899999999999999988 22 23333 33334467788999999999
Q ss_pred HHHHH
Q 005580 478 YLLHK 482 (690)
Q Consensus 478 ~ll~~ 482 (690)
..|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=93.89 E-value=2.2 Score=43.03 Aligned_cols=122 Identities=11% Similarity=0.005 Sum_probs=95.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
.+....+.|++.+|...|.+...- -++|.-+||.+=-+|.+.|+.++|..-+.+..+.-. -+...+|.|--.+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCC
Confidence 556777889999999999998763 467889999999999999999999988888766521 233556777777888899
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005580 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (690)
.+.|..++.+-...+.. |..+-.-|.-.....|++++|.++-..
T Consensus 184 ~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 184 LEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999988877544 455555566777889999999887544
No 128
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.88 E-value=1.6 Score=42.92 Aligned_cols=109 Identities=11% Similarity=0.043 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHCCCCCCcchHHHHH
Q 005580 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA-MSMGD--GDMAFDMVKRMKSLGINPRLRSYGPAL 429 (690)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~-~~~g~--~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (690)
.|.. |-..|...|++++|...|++...... -|...+..+-.++ ...|+ .++|.+++++..+..- -+...+..+-
T Consensus 75 ~w~~-Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA 151 (198)
T PRK10370 75 QWAL-LGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLA 151 (198)
T ss_pred HHHH-HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHH
Confidence 3444 66788899999999999999887542 3667777777764 67777 5999999999887742 2667888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005580 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (690)
Q Consensus 430 ~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (690)
..+.+.|+.++|...|+.+.+. ..|+..-+. +|.+
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~-~i~~ 186 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH-HHHH
Confidence 8999999999999999999876 345554443 3344
No 129
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.88 E-value=6.3 Score=44.72 Aligned_cols=297 Identities=12% Similarity=0.055 Sum_probs=166.6
Q ss_pred hhcCcchHhHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005580 162 QRTNDSGQYKVRGITDEKG-SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g-~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~ 240 (690)
..++..+-..+|.+....- .++.. -.|- ..|..+-+.|-..|+++.|..+|++..+-..+ .+.-...+=-.|+...
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~-Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAV-GSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEME 435 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCC-CChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHH
Confidence 3456677778888875431 12222 2333 57888999999999999999999998765432 2222222222333222
Q ss_pred cCCcccCCCCchhhHHhHhhhhccccccccccC------CCCc--------cchhhccccccccccccccCCChhhHHHH
Q 005580 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR------DMDN--------NGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (690)
Q Consensus 241 ~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~------gv~d--------~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (690)
. +..+++.|..+...- ..+.... |-.+ ...|.-.++- .-..|-++....+
T Consensus 436 l------rh~~~~~Al~lm~~A----~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~v 499 (835)
T KOG2047|consen 436 L------RHENFEAALKLMRRA----THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAV 499 (835)
T ss_pred H------hhhhHHHHHHHHHhh----hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHH
Confidence 1 345566676666310 0111110 0001 1123333343 3345677777888
Q ss_pred HHHHHHcCCCCCccccchhhhhhc--cccccCCCchhhhhcCC----CCChh-hhHHHHHHHHHhcc--CHHHHHHHHHH
Q 005580 307 FNEKENLGQFSNGHMKLNSQLLDG--RSNLERGPDDQSRKKDW----SIDNQ-DADEIRLSEDAKKY--AFQRGFEIYEK 377 (690)
Q Consensus 307 f~eM~~~g~~Pd~~ty~~~~li~g--~~~~a~~~~~~m~~~g~----~pd~~-tyn~~lI~~~~k~g--~~~~A~~lf~~ 377 (690)
++.+....+.--.+..|...+++- |..++.++ -.+|+ .|++. .||+.|...-.+-| .+++|..+|++
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~----YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKA----YERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHH----HHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 888887765543333331122111 11222111 12343 24543 46664444444433 78999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005580 378 MCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (690)
Q Consensus 378 M~~~g~~pd~~tyn~LI~~~--~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv 453 (690)
-.+ |++|...-+--|+-+- -+.|....|+.++++... ++++. ...||+.|.-....=-+.....+|++..+.
T Consensus 576 aL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~-- 651 (835)
T KOG2047|consen 576 ALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES-- 651 (835)
T ss_pred HHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--
Confidence 988 7877654433333221 135888889999988543 35443 357888887666655555667777777664
Q ss_pred CCCHHHHHHHHHHH---HHcCChHHHHHHHHHHHH
Q 005580 454 YPEEPELEALLRVS---VEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 454 ~pd~~ty~~Li~~~---~~~g~~~~A~~ll~~M~~ 485 (690)
.||...-...|+.- ++.|.+++|..++..-.+
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 56665544444332 778888888888776544
No 130
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.69 E-value=1.6 Score=41.75 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=59.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHh
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~k 434 (690)
+-..|...|++++|...|++.......++ ...|..+...+.+.|++++|...+.+.... .|+ ...+..+-..+..
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH
Confidence 55677888999999999999987543332 467888899999999999999999988765 343 4455555566666
Q ss_pred cCC
Q 005580 435 NGD 437 (690)
Q Consensus 435 ~g~ 437 (690)
.|+
T Consensus 119 ~g~ 121 (172)
T PRK02603 119 RGE 121 (172)
T ss_pred cCC
Confidence 665
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.57 E-value=9.1 Score=45.42 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=77.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcch--HHHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS--YGPALSVFC 433 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~p--d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--y~~lI~~~~ 433 (690)
|-+.|.-.|+.+.++.+...+......- -...|=-+-++|-..|++++|...+.+- .+..||-++ +--|-..+.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s--~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES--LKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--HccCCCCccccccchhHHHH
Confidence 6677778888888888888877643111 1123556677788888888888887544 344555533 345667788
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcC----ChHHHHHHHHHHHHc
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAG----KGDRVYYLLHKLRTS 486 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g----~~~~A~~ll~~M~~~ 486 (690)
+.|+++.+...|+...+. .||.. |.-+|=..|+..+ ..++|..++.+-...
T Consensus 354 ~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 888888888888877664 34433 3333333333332 445666666555544
No 132
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.48 E-value=6.2 Score=44.92 Aligned_cols=146 Identities=8% Similarity=-0.050 Sum_probs=97.7
Q ss_pred cCCCCChhhhHHHHHHHHHh--cc---CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc--------CChHHHHHHH
Q 005580 345 KDWSIDNQDADEIRLSEDAK--KY---AFQRGFEIYEKMCLDEVPMNE-ASLTAVGRMAMSM--------GDGDMAFDMV 410 (690)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k--~g---~~~~A~~lf~~M~~~g~~pd~-~tyn~LI~~~~~~--------g~~~~A~~l~ 410 (690)
.....|...|.. .+.+... .+ ..++|..+|++..+. .||- ..|..+..++... .++..+.+..
T Consensus 331 ~~~~~~~~Ay~~-~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTL-FYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 444556667766 5555333 22 377999999999875 4653 3444443333221 1223344444
Q ss_pred HHHHHC-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005580 411 KRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (690)
Q Consensus 411 ~~M~~~-g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g 489 (690)
...... ....+...|.++--.....|+.++|...+++..+.. |+...|..+-..|...|+.++|.+.+++-... .
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 433232 122344677777555666899999999999998865 78899999999999999999999999998877 6
Q ss_pred CChhHHHH
Q 005580 490 VSPSTADV 497 (690)
Q Consensus 490 ~~p~t~~~ 497 (690)
+...||-.
T Consensus 484 P~~pt~~~ 491 (517)
T PRK10153 484 PGENTLYW 491 (517)
T ss_pred CCCchHHH
Confidence 66557744
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.48 E-value=2.6 Score=49.59 Aligned_cols=131 Identities=12% Similarity=0.076 Sum_probs=99.3
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
..+.|+.++|..+++...+. .||.... -..+...+.+.+++++|+.
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~--~Pd~~~a--------------------------------~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQR--FPDSSEA--------------------------------FILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhh--CCCcHHH--------------------------------HHHHHHHHHHhccHHHHHH
Confidence 56788999999999887764 4444333 2337788899999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005580 374 IYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 374 lf~~M~~~g~~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
.+++..... || ....+.+-.++.+.|+.++|.++|++.... .|| ..++..+=..+-+.|+.++|...|+...+.
T Consensus 142 ~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 142 EIELYFSGG--SSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998754 44 456677777888999999999999999874 344 577778888888999999999999987654
Q ss_pred CCCCCHHHHHHH
Q 005580 452 GVYPEEPELEAL 463 (690)
Q Consensus 452 gv~pd~~ty~~L 463 (690)
..|...-|+-+
T Consensus 218 -~~~~~~~~~~~ 228 (694)
T PRK15179 218 -IGDGARKLTRR 228 (694)
T ss_pred -hCcchHHHHHH
Confidence 22333444433
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=93.41 E-value=2.3 Score=46.59 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=90.6
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChHH
Q 005580 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~~~~ 440 (690)
+-..|..++|+..++.+... .+-|..-+....+.+.+.++..+|.+.++.+... .|+. ...-.+-.+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34678888999999887764 2335555666677888899999999999888765 4663 344445567888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
|..++++-... ..-|...|..|-.+|...|+..+|..-.-++-..
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 98888887655 4557888999999999999888887766665543
No 135
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.30 E-value=0.23 Score=39.20 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=26.8
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005580 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (690)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (690)
+.|++++|.++|+++...... |...+-.+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555666666555543211 4444445555555555555555555555443
No 136
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.23 E-value=1.3 Score=47.85 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=76.5
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCCh
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g~~ 438 (690)
..+...|++++|.++|++..+... -+...|..+-.+|.+.|++++|+..++..... .| +...|..+-.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence 345577899999999999887542 35677888888888999999999999888765 34 455677777788889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005580 439 DKACSVEEHMLEHGVYPEEPELEALLR 465 (690)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (690)
++|...|++..+ +.|+......++.
T Consensus 87 ~eA~~~~~~al~--l~P~~~~~~~~l~ 111 (356)
T PLN03088 87 QTAKAALEKGAS--LAPGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 999999988876 4466555555543
No 137
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.23 E-value=2.4 Score=48.52 Aligned_cols=212 Identities=11% Similarity=0.087 Sum_probs=148.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCC
Q 005580 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (690)
Q Consensus 196 ~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv 275 (690)
.+-..+.+.|-...|+.+|++.. .|.-+|..|+ ..|+.++|..+.. +++.+ -
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~----------~lg~~~kaeei~~------q~lek---~ 454 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYL----------LLGQHGKAEEINR------QELEK---D 454 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHH----------HhcccchHHHHHH------HHhcC---C
Confidence 45566777899999999998764 5667888888 6777888888874 33331 1
Q ss_pred CccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhH
Q 005580 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (690)
Q Consensus 276 ~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn 355 (690)
+|..-|..+-+. .-..-.+++|.++++.--.+. .- .++
T Consensus 455 ~d~~lyc~LGDv------~~d~s~yEkawElsn~~sarA-----~r-------------------------------~~~ 492 (777)
T KOG1128|consen 455 PDPRLYCLLGDV------LHDPSLYEKAWELSNYISARA-----QR-------------------------------SLA 492 (777)
T ss_pred CcchhHHHhhhh------ccChHHHHHHHHHhhhhhHHH-----HH-------------------------------hhc
Confidence 245557777777 666777788888887543220 00 000
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHH
Q 005580 356 EIRLSEDAKKYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFC 433 (690)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~-~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~ 433 (690)
. .....++++++.+.|+.-.+ .-+ -..||=.+=-+.-+.+++..|.+-|..-.. ..||. ..||.+=.+|.
T Consensus 493 ~----~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 493 L----LILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYI 564 (777)
T ss_pred c----ccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHH
Confidence 1 11235788888888875443 222 234555544455678899999999987654 35655 68999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.|+-.+|+..+.+..+.+ .-+.-.|.-.+-...+.|.+++|++.+++|.+.
T Consensus 565 ~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9999999999999998887 334455555666678999999999999888653
No 138
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=93.10 E-value=1.6 Score=41.49 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=33.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~p--d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (690)
+...+...|++++|...|++.......| ...+|..+-..|.+.|+.++|.+.++.....
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444555666777777666665432222 1235666666666666666666666665543
No 139
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.08 E-value=3.1 Score=48.92 Aligned_cols=124 Identities=8% Similarity=-0.085 Sum_probs=101.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchH-HHHHHHHHhc
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPALSVFCNN 435 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~-~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty-~~lI~~~~k~ 435 (690)
|-....+.|..++|..+++...+. .||. ...-.+...+.+.+++++|....++.... .|+..+. +.+-.++.+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHh
Confidence 567778899999999999999874 5664 56788889999999999999999988776 4666544 4455566788
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
|+.++|..+|++....+ .-+..++..+=..+-+.|+.++|...|++-.+.
T Consensus 168 g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 168 GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999998832 223778888888889999999999999998764
No 140
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.76 E-value=0.55 Score=43.46 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M 448 (690)
..++..+...|++++|.++...+.... .-|...|-.+|.+|...|+..+|.++|+.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444445555555555555554431 124445555555555555555555555544
No 141
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.75 E-value=2.5 Score=45.73 Aligned_cols=139 Identities=15% Similarity=0.114 Sum_probs=109.0
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchH-HHHH
Q 005580 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPAL 429 (690)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty-~~lI 429 (690)
.+|.. .|+.--+..-++.|..+|-+..+.| +.+++..|+++|.-+|. |+..-|..+|+.=... -||.-.| +-.+
T Consensus 398 ~v~C~-~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCV-HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hHHHH-HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34445 6777777888899999999999999 67999999999998875 6778899999753222 3666555 4566
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 005580 430 SVFCNNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (690)
Q Consensus 430 ~~~~k~g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (690)
..+.+-++-+.|..+|+.-+.+ +.-+ -..|..+|+.=.+-|++..|+.|=++|.+. .+..++..+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 7778889999999999955433 2223 568999999999999999999999999998 777776655
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=92.70 E-value=3.3 Score=45.89 Aligned_cols=129 Identities=15% Similarity=0.120 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCCcchH-HHHH
Q 005580 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKR-MKSLGINPRLRSY-GPAL 429 (690)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~-M~~~g~~Pd~~ty-~~lI 429 (690)
+|-. .|+.--|..-++.|..+|.+..+.+..+ +++.++++|.-||. ++..-|.++|+- |+.. +|.-.| ..-+
T Consensus 368 v~~~-~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~Yl 442 (656)
T KOG1914|consen 368 VYCQ-YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYL 442 (656)
T ss_pred ehhH-HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHH
Confidence 3444 5666667777788888888888887777 78888888887775 567788888875 3333 344333 4566
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 430 SVFCNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 430 ~~~~k~g~~~~A~~l~~~M~~~gv~pd~--~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+-+...++-..|..+|+.....++.||. ..|..+|+.=..-|++..+.++-+++...
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 7777778888888888888888666543 67888888888888888888887777665
No 143
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.68 E-value=0.57 Score=48.88 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005580 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (690)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (690)
.+|..+++..-+.+.++.|..+|.+..+.+ +..+++...++|..+ ..++.+.|.++|+...+. +..+...|...|+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578899999999999999999999998653 566777777777544 357778899999999876 56688889999999
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 005580 467 SVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.+.++.+.|..+|++....
T Consensus 80 l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 144
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.47 E-value=0.5 Score=37.17 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=27.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.|++++|.++|+.+....-. |...+-.|..+|.+.|++++|..+|+++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555543211 4444445555556666666666666555555
No 145
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.45 E-value=2.9 Score=43.61 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=54.3
Q ss_pred cCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCcch-HHHHHHHHH
Q 005580 366 YAFQRGFEIYEKMCL----DEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-----PRLRS-YGPALSVFC 433 (690)
Q Consensus 366 g~~~~A~~lf~~M~~----~g~~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~-----Pd~~t-y~~lI~~~~ 433 (690)
|++++|.+.|++-.+ .| .+. ..++.-+...+.+.|++++|.++|++....-.. +++.. |-..+-.+.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL 207 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 566777766665442 22 111 234566667788888888888888887654322 22221 222333455
Q ss_pred hcCChHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHH
Q 005580 434 NNGDVDKACSVEEHMLEH--GVYP--EEPELEALLRVS 467 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~--gv~p--d~~ty~~Li~~~ 467 (690)
..||...|.+.|++.... ++.. .......||.+|
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 568888888888877644 2222 233444555554
No 146
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.06 E-value=8.3 Score=39.16 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=97.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHH-----H
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-----F 432 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-----~ 432 (690)
++..+.-.|.+.-...++++..+.....+.+....|.+.-.+.||.+.|...|+..++..-+.|..+++.++.. |
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 44444445667777888888888877778888999999999999999999999988877666777788777653 3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 433 CNNGDVDKACSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 433 ~k~g~~~~A~~l~~~M~~~gv~pd~~ty~--~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
.-.++...|...|++.....-. |.+.-| +|+..| .|+..+|.+.+..|... .|.|.
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~ 320 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHY 320 (366)
T ss_pred ecccchHHHHHHHhhccccCCC-chhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccc
Confidence 4467888888889887665321 222222 444444 58899999999999998 66665
No 147
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=9.3 Score=42.76 Aligned_cols=242 Identities=12% Similarity=0.022 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~ 271 (690)
.....--+-|-..+++.+.+++++...+. .++....+..-|..+.. .| +...+|.+. +.|.+
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~e----------l~---~~n~Lf~ls----h~LV~ 306 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYE----------LG---KSNKLFLLS----HKLVD 306 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHH----------hc---ccchHHHHH----HHHHH
Confidence 44555556667789999999999998753 23444455555665552 22 333444322 34443
Q ss_pred cCCCC-ccchhhccccccccccccccCCChhhHHHHHHHHH--HcCCCCCccccc------------------hhhhhhc
Q 005580 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE--NLGQFSNGHMKL------------------NSQLLDG 330 (690)
Q Consensus 272 ~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~--~~g~~Pd~~ty~------------------~~~li~g 330 (690)
..+ ..++|=++=-- |-..|+..+|++.|..-. ..-.-|--+.|. ...++.|
T Consensus 307 --~yP~~a~sW~aVg~Y------Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 307 --LYPSKALSWFAVGCY------YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred --hCCCCCcchhhHHHH------HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 233 44555444333 445567777777776532 222222222222 1122222
Q ss_pred cc----------------cccCCCchhhhhcCCCC-ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC--CCCCC----H
Q 005580 331 RS----------------NLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMN----E 387 (690)
Q Consensus 331 ~~----------------~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--g~~pd----~ 387 (690)
+- +.|+..|.+.. ++-| |....+. +=-..-+.+.+.+|...|+.-... .+.+. +
T Consensus 379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~E-lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 379 CHLPSLYLGMEYMRTNNLKLAEKFFKQAL--AIAPSDPLVLHE-LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred CcchHHHHHHHHHHhccHHHHHHHHHHHH--hcCCCcchhhhh-hhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 21 22333333222 2233 4444444 222223456677777777765521 11121 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005580 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (690)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (690)
.+++.|=+.|-+.+..++|+..+++-... ..-|..+|+++=-.|...|+++.|.+.|.+-. .+.||..+-..|+.
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 34566666777777777777777766554 34466777777777777777777777777654 35677666666665
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=91.97 E-value=2.7 Score=45.41 Aligned_cols=96 Identities=13% Similarity=0.015 Sum_probs=77.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 005580 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (690)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (690)
..+...|++++|+++|++..+..- -+...|..+-.+|.+.|++++|...+++..+.. ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 455678999999999999987631 245677777888999999999999999998753 235677888888999999999
Q ss_pred HHHHHHHHHHHcCCCCChhH
Q 005580 475 RVYYLLHKLRTSVRKVSPST 494 (690)
Q Consensus 475 ~A~~ll~~M~~~~~g~~p~t 494 (690)
+|...|++.... .+....
T Consensus 88 eA~~~~~~al~l--~P~~~~ 105 (356)
T PLN03088 88 TAKAALEKGASL--APGDSR 105 (356)
T ss_pred HHHHHHHHHHHh--CCCCHH
Confidence 999999999887 444333
No 149
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.79 E-value=6.5 Score=46.75 Aligned_cols=108 Identities=9% Similarity=0.045 Sum_probs=55.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+-.+-.+.|.+.+|.+-|-+- -|...|.-+|+...+.|.+++-.+.+...++..-.|.+. +.||-+|++.++
T Consensus 1110 lakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1110 LAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNR 1181 (1666)
T ss_pred HHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhch
Confidence 445555555555555544332 244556666666666666666666665555554445443 356666666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005580 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll 480 (690)
+.+-.++.. -||..-...+=+-|...|.++.|.-++
T Consensus 1182 l~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1182 LTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 554443331 244444444444444444444444333
No 150
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=91.30 E-value=32 Score=39.45 Aligned_cols=279 Identities=11% Similarity=-0.019 Sum_probs=167.8
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~ 241 (690)
..|..++-..+|.+....-. + ..+.|-....-+-.+||+..|..++.+.....- -+...|-.-++.-.
T Consensus 562 ~hgt~Esl~Allqkav~~~p-k------ae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~---- 629 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCP-K------AEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEF---- 629 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCC-c------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhh----
Confidence 34555666677777654311 1 125666666777777888888888888776432 25566666666666
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccch-hhccccccccccccccCCChhhHHHHHHHHHHcCCCCCcc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (690)
....+++|..+|. .-....|-.-+.+ +-.+ .--.+.+++|.+++++-.+. .|+..
T Consensus 630 ------en~e~eraR~lla-------kar~~sgTeRv~mKs~~~---------er~ld~~eeA~rllEe~lk~--fp~f~ 685 (913)
T KOG0495|consen 630 ------ENDELERARDLLA-------KARSISGTERVWMKSANL---------ERYLDNVEEALRLLEEALKS--FPDFH 685 (913)
T ss_pred ------ccccHHHHHHHHH-------HHhccCCcchhhHHHhHH---------HHHhhhHHHHHHHHHHHHHh--CCchH
Confidence 6677888888884 2222212222222 1111 22356778888888765543 45544
Q ss_pred ccchhhhhhccccccCCCchhh---hhcC--CCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005580 321 MKLNSQLLDGRSNLERGPDDQS---RKKD--WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (690)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~~m---~~~g--~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ 395 (690)
-+ .++-|...+...-.+.. --.| ..|+.+-....|...=-+.|.+-+|..+|+.-+.++. -|...|-..|+
T Consensus 686 Kl---~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir 761 (913)
T KOG0495|consen 686 KL---WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIR 761 (913)
T ss_pred HH---HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHH
Confidence 43 34444331111111100 0112 2355544444355666677888999999998887753 47788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 005580 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (690)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~ 475 (690)
+=.+.|..+.|..++.+..+. |.-+..-|.--|...-+.++-.+....+.. +.-|..+.-++-..|-...++++
T Consensus 762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHH
Confidence 999999999998888776554 544556677666666666553333333222 44566666666666667777777
Q ss_pred HHHHHHHHHHc
Q 005580 476 VYYLLHKLRTS 486 (690)
Q Consensus 476 A~~ll~~M~~~ 486 (690)
|.+-|.+-...
T Consensus 836 ar~Wf~Ravk~ 846 (913)
T KOG0495|consen 836 AREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHcc
Confidence 77777776665
No 151
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.27 E-value=2.1 Score=45.38 Aligned_cols=105 Identities=10% Similarity=-0.018 Sum_probs=82.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
.|.-+...|....|.++-.+.+ .||..-|-..|++|+..++|++-.++-.. .- ..+-|-+++.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 4566677888888888877664 48999999999999999999987776432 22 34889999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005580 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (690)
..+|..+...+ ++..-+..|.++|++.+|.+.-.+
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999888772 336678888999999998775333
No 152
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=30 Score=39.07 Aligned_cols=137 Identities=12% Similarity=0.191 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHHHCCCCCCcchHHHHHHHHHhcCCh
Q 005580 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK--------RMKSLGINPRLRSYGPALSVFCNNGDV 438 (690)
Q Consensus 367 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~--------~M~~~g~~Pd~~ty~~lI~~~~k~g~~ 438 (690)
.+.+|.+++...-+....-..++--+++......|+++.|.+++. .+.+.+..|-++. +++.-+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCC
Confidence 466777777776654333334556666777888999999999999 6777777776654 566777788888
Q ss_pred HHHHHHHHHHHhC--CCCCCHHHHHHHHHH----HHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHcchH
Q 005580 439 DKACSVEEHMLEH--GVYPEEPELEALLRV----SVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKE 506 (690)
Q Consensus 439 ~~A~~l~~~M~~~--gv~pd~~ty~~Li~~----~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~~~ 506 (690)
+.|-.++++.... .-.+.....++++.- =.+.|..++|..+++++.... +.+.+ ....+.+++.-..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCH
Confidence 8888888776532 111222333333333 257899999999999999851 22222 3444777766543
No 153
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.09 E-value=4.8 Score=43.98 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=95.6
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHH
Q 005580 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~ 440 (690)
+=-..|++..|.++|+.-.+ ..||...|++.|+-=.+-..++.|..+++...-. .|++.+|---..-=-++|.+..
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 33456889999999998765 6799999999999999999999999999987654 5999999888888888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCChHHHHHHHHHHHHc
Q 005580 441 ACSVEEHMLEHGVYPEEPELEALLRVSV----EAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~----~~g~~~~A~~ll~~M~~~ 486 (690)
|..+|+...+. .-|...-..|+.+++ ++..++.|.-+++.-.++
T Consensus 226 aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 226 ARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999887653 124444455555554 566778888888887777
No 154
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.08 E-value=21 Score=40.64 Aligned_cols=293 Identities=9% Similarity=-0.011 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G-~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~ 270 (690)
..|-...-+.--.|+...|..+.++..+.- -.|+...|.-....+-+... -.+.|...+|.+.+. +.
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i----~~E~g~~q~ale~L~--------~~ 211 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI----LIEAGSLQKALEHLL--------DN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH----HHHcccHHHHHHHHH--------hh
Confidence 677777778888899999999999998654 35777777655444332110 005566777776663 11
Q ss_pred ccCCCCccchhh-ccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccc------hh-------hhhhccc----
Q 005580 271 DSRDMDNNGQLD-YGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL------NS-------QLLDGRS---- 332 (690)
Q Consensus 271 ~~~gv~d~~tyn-~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~------~~-------~li~g~~---- 332 (690)
+. .+.|.+.|- +--+- +.+.+++++|..++..+..+ -||.+-|. .+ .+-..|.
T Consensus 212 e~-~i~Dkla~~e~ka~l------~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 212 EK-QIVDKLAFEETKADL------LMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred hh-HHHHHHHHhhhHHHH------HHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 11 111222211 11111 56778888888888888776 47777776 10 0001111
Q ss_pred ----------------------cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHH----HHHHhCCC---
Q 005580 333 ----------------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIY----EKMCLDEV--- 383 (690)
Q Consensus 333 ----------------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf----~~M~~~g~--- 383 (690)
..-..++..+.++|+.+-.. . +.+.|-.-...+-..++. ..|...|.
T Consensus 283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~---d-l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK---D-LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh---h-hHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 00111344556666654322 2 333332222211111222 22221111
Q ss_pred -------CCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005580 384 -------PMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (690)
Q Consensus 384 -------~pd~~tyn--~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv 453 (690)
+|....|+ -++..|-+.|+++.|...++.-... .|+.+ -|-+=-..++.+|++++|...+++..+-.
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 46655554 4677788899999999999976544 45543 33333477889999999999999987654
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh------HH-HH--HHHHHcchHHHHhhc
Q 005580 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS------TA-DV--IAKWFNSKEAARLGK 512 (690)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~------t~-~~--I~~~~~~~~~~~a~~ 512 (690)
.||...-.--..-..++.+.++|.++.....+.+.+.-.+ .| .+ -.++.+.++...|.+
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence 3565555455666678899999999999998884333333 22 11 345555555555554
No 155
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=16 Score=41.15 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=83.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHH--HHHHH--h
Q 005580 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA--LSVFC--N 434 (690)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~l--I~~~~--k 434 (690)
|+.+.+.|++++|.+..+.+...+ +-|...+-.=+-++.+.+++++|+.+.+. .+ -..+++.. =.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 577888999999999999998866 44556677777788889999999966543 22 11223333 45565 6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 435 NGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+..++|...++ |+.++.. +...=-..+-+.|++++|+++++.+.++
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 789999998888 4444443 4444445667899999999999999776
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=90.64 E-value=5.2 Score=37.92 Aligned_cols=95 Identities=19% Similarity=0.102 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005580 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (690)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P--d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (690)
...|..+...+...|++++|...|+......-.| ...+|..+-..+...|+.++|...++...... .....++..+-
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4567777778888999999999999887653222 23478888888999999999999999887642 22345566666
Q ss_pred HHHH-------HcCChHHHHHHHHH
Q 005580 465 RVSV-------EAGKGDRVYYLLHK 482 (690)
Q Consensus 465 ~~~~-------~~g~~~~A~~ll~~ 482 (690)
..+. +.|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 6666 77777755555543
No 157
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.44 E-value=7.5 Score=35.51 Aligned_cols=120 Identities=9% Similarity=0.000 Sum_probs=86.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+|..+.+.+.......+++.+...+. .+...+|.+|..|++.. ..+..+.+.. .++.+...-++..|-+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 88888888999999999999998874 78889999999999874 3444455542 2456666779999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 005580 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~-g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~ 500 (690)
.+++..++..+.. |.-.++.+... ++++.|.+++.+ .-.|+.|..+..
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~ 133 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLK 133 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHH
Confidence 9999999988732 22233334444 778888887765 124566655333
No 158
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.37 E-value=5.7 Score=44.14 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhh
Q 005580 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (690)
Q Consensus 187 ~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p-d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~ 260 (690)
..|+ .+|-..|+.--|..-++.|..+|.+.++.+..+ +++.++++|.-+| .++-+-|.++|.
T Consensus 363 ~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-----------skD~~~AfrIFe 425 (656)
T KOG1914|consen 363 IDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-----------SKDKETAFRIFE 425 (656)
T ss_pred cCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-----------cCChhHHHHHHH
Confidence 3455 677777777777777777777777777776666 7777777777777 344555666663
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=90.26 E-value=7 Score=35.11 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=65.2
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---cchHH-HHHHHHH
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYG-PALSVFC 433 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~ty~-~lI~~~~ 433 (690)
.++-..|+.++|..+|++-...|...+ ...+--+-..+-..|++++|..+|++.... .|+ ..... .+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence 345567888888888888888876654 234445556677788888888888877654 244 11111 1122556
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (690)
..|+.++|.+.+-.... ++..-|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 77888888877765533 34446666665554
No 160
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=90.19 E-value=8.3 Score=39.05 Aligned_cols=146 Identities=14% Similarity=0.071 Sum_probs=102.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChH
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~ 439 (690)
..+--.|+-+.+..+....... -.-|....+.++....+.|++.+|...|++.... -.||...|+.+=-+|-+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 3444455555555555443322 2235556667889999999999999999997655 5689999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhH--HHHHHHHHcchHHHHh
Q 005580 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST--ADVIAKWFNSKEAARL 510 (690)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t--~~~I~~~~~~~~~~~a 510 (690)
+|..-|.+..+--. -+...+|-|--.|.-.|+.+.|..++..-... +..+++ -+....+-..+...+|
T Consensus 152 ~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 152 EARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHH
Confidence 99999988776422 24455666766777889999999999999887 554443 2334444444444333
No 161
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=90.16 E-value=8 Score=39.86 Aligned_cols=102 Identities=9% Similarity=-0.009 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHH
Q 005580 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPEEPELE 461 (690)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~----~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv--~pd~~ty~ 461 (690)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+--+-..|...|+.++|...|+.+.+.-- ......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555555567777777777776654 2433 2344455666777777777777777765311 11122233
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
.+...+...|+.++|..+|++..+. .|...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 3444556778888888888888877 44443
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=89.97 E-value=1.6 Score=33.94 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=34.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 430 SVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 430 ~~~~k~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..+.+.|++++|.+.|++..+.. | +...+..+-..+...|++++|..+|++..+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566677777777777776654 3 4455555666666777777777777776654
No 163
>PLN02789 farnesyltranstransferase
Probab=89.91 E-value=30 Score=36.81 Aligned_cols=225 Identities=11% Similarity=0.006 Sum_probs=131.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcccCCcccCCCC-chhhHHhHhhhhccccccccccCC
Q 005580 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH-YNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRD 274 (690)
Q Consensus 197 lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~t-yn~Ll~~~~~~~~~~~~~~k~g-~~~~A~~vf~~~~~~s~em~~~~g 274 (690)
+-..+...++.++|+.+.+++... .|+-+| |+.-=..+. +.| .+++++..++ ++... .
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~----------~L~~~l~eeL~~~~-------~~i~~-n 102 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLE----------ALDADLEEELDFAE-------DVAED-N 102 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHH----------HcchhHHHHHHHHH-------HHHHH-C
Confidence 333445667888999999988853 344432 332222222 233 4677777774 33221 2
Q ss_pred CCccchhhccccccccccccccCCC--hhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChh
Q 005580 275 MDNNGQLDYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (690)
Q Consensus 275 v~d~~tyn~LI~~~~~~~~~~~~g~--~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~ 352 (690)
-++-..|+..-.. +.+.|. .+++..++++|.+.. .. |..
T Consensus 103 pknyqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~d----pk-----------------------------Ny~ 143 (320)
T PLN02789 103 PKNYQIWHHRRWL------AEKLGPDAANKELEFTRKILSLD----AK-----------------------------NYH 143 (320)
T ss_pred CcchHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHhC----cc-----------------------------cHH
Confidence 2243445533222 222333 256677777776542 11 222
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCh----HHHHHHHHHHHHCCCCCCcchH
Q 005580 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---GDG----DMAFDMVKRMKSLGINPRLRSY 425 (690)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~---g~~----~~A~~l~~~M~~~g~~Pd~~ty 425 (690)
.|+. .--.+.+.|++++|++.++++.+.... |...|+-.--.+.+. |.. +++++...++.... .-|...|
T Consensus 144 AW~~-R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW 220 (320)
T PLN02789 144 AWSH-RQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPW 220 (320)
T ss_pred HHHH-HHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHH
Confidence 3444 445555668899999999999987654 556676655555444 222 45666665555542 2356778
Q ss_pred HHHHHHHHhc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC------------------ChHHHHHHHHHH
Q 005580 426 GPALSVFCNN----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG------------------KGDRVYYLLHKL 483 (690)
Q Consensus 426 ~~lI~~~~k~----g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g------------------~~~~A~~ll~~M 483 (690)
+-+-..+... +...+|.+.+.+....+ ..+......|++.|+... ..++|..++..|
T Consensus 221 ~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 221 RYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 7777777763 34466888888876643 346778888999998643 235677777777
Q ss_pred H
Q 005580 484 R 484 (690)
Q Consensus 484 ~ 484 (690)
.
T Consensus 300 ~ 300 (320)
T PLN02789 300 E 300 (320)
T ss_pred H
Confidence 3
No 164
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=89.80 E-value=5.5 Score=36.66 Aligned_cols=61 Identities=15% Similarity=0.222 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 424 ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
....++..+...|+.++|..+.+.+.... +.|...|..+|.+|...|+..+|.+.|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566777788999999999999998764 44888999999999999999999999998854
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.51 E-value=18 Score=36.72 Aligned_cols=158 Identities=8% Similarity=-0.003 Sum_probs=92.5
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
+.+.|++++|.+.|++.... -|+.. +. ..+ . -.+..+|-+.++.++|..
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~-~a----~~a-----------------------~-l~la~ayy~~~~y~~A~~ 90 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGP-YS----QQV-----------------------Q-LDLIYAYYKNADLPLAQA 90 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCh-HH----HHH-----------------------H-HHHHHHHHhcCCHHHHHH
Confidence 55689999999999999874 34331 11 000 0 015677889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh--c---------------CC---hHHHHHHHHHHHHCCCCCCcc------hHH-
Q 005580 374 IYEKMCLDEVPMNEASLTAVGRMAMS--M---------------GD---GDMAFDMVKRMKSLGINPRLR------SYG- 426 (690)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~LI~~~~~--~---------------g~---~~~A~~l~~~M~~~g~~Pd~~------ty~- 426 (690)
.|++..+.-..-..+-|.-.+.|.+. . .+ ..+|++.|+.+.+. -||.. ..-
T Consensus 91 ~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~ 168 (243)
T PRK10866 91 AIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLV 168 (243)
T ss_pred HHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99999886443334456666666552 1 12 23455666666554 24331 111
Q ss_pred -----------HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005580 427 -----------PALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (690)
Q Consensus 427 -----------~lI~~~~k~g~~~~A~~l~~~M~~~--gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (690)
.+-.-|.+.|....|..=|+.+.++ +........-.|+.+|.+.|..++|......+.
T Consensus 169 ~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 169 FLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1223355666666666666666654 333444555566666666666666666555443
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=89.33 E-value=1.5 Score=34.13 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=38.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (690)
..+.+.|++++|.++|++..+.. +-+...+..+-..+...|++++|...|++..+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667777788888888777765 225566677777777778888887777776543
No 167
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.14 E-value=14 Score=40.72 Aligned_cols=155 Identities=13% Similarity=0.063 Sum_probs=109.1
Q ss_pred hhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 005580 326 QLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405 (690)
Q Consensus 326 ~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~ 405 (690)
.++.|-...+...|+..+.-.-.++.. |-- +-..|....+.++.++.|++-.+-... |..+|-.=-..+.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~-~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIK-RAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHH-HHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 344444455555666555432222221 323 557788999999999999988875432 33445444444555678889
Q ss_pred HHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005580 406 AFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (690)
Q Consensus 406 A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (690)
|..=|++.++. .| +++.|--+--+.-|.+.+++++..|++..++ +.--...||..-..+...+++++|.+.++.-.
T Consensus 413 A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 98888877654 33 4566666666667889999999999998765 55567888888899999999999999999887
Q ss_pred Hc
Q 005580 485 TS 486 (690)
Q Consensus 485 ~~ 486 (690)
+.
T Consensus 490 ~L 491 (606)
T KOG0547|consen 490 EL 491 (606)
T ss_pred hh
Confidence 76
No 168
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.12 E-value=13 Score=39.10 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhc----cCHHHHHHHH
Q 005580 300 FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK----YAFQRGFEIY 375 (690)
Q Consensus 300 ~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~----g~~~~A~~lf 375 (690)
+++...+++.|.+.|++-+..+|- .++ +|...+.. -.+.+|..+|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~l-----aA~--------------------------~i~~~~~~~~~~~~~~ra~~iy 126 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYL-----AAL--------------------------IILEEEEKEDYDEIIQRAKEIY 126 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHH-----HHH--------------------------HHHHhcccccHHHHHHHHHHHH
Confidence 566788889999999988887764 111 11211111 2457899999
Q ss_pred HHHHhCCC---CCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCC---hHHHHHH
Q 005580 376 EKMCLDEV---PMNEASLTAVGRMAMSMGDG----DMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGD---VDKACSV 444 (690)
Q Consensus 376 ~~M~~~g~---~pd~~tyn~LI~~~~~~g~~----~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~---~~~A~~l 444 (690)
+.|++... .++-+++.+|+.. ...++ +.++.+++.+.+.|+..+- .-+-+-|-+++..-. +..+.++
T Consensus 127 ~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l 204 (297)
T PF13170_consen 127 KEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIEL 204 (297)
T ss_pred HHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHH
Confidence 99998753 3677888888776 33333 5678888888888876543 244444444544322 4568889
Q ss_pred HHHHHhCCCCCCHHHHHHH
Q 005580 445 EEHMLEHGVYPEEPELEAL 463 (690)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~L 463 (690)
++.+.+.|+++....|..+
T Consensus 205 ~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 205 YNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHcCCccccccccHH
Confidence 9999999999888887754
No 169
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.96 E-value=4.4 Score=47.02 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=118.3
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC--------CCHHHHH
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR-EGIK--------LGQYHYN 230 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~-~G~~--------pd~~tyn 230 (690)
+...|+.+.|++-...++ .. ..|..|-+.|.+..+++-|.-.+..|.. .|.+ |+.. .
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~--e 803 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED--E 803 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch--h
Confidence 345677888888887773 33 8999999999999999999998888873 2221 2111 0
Q ss_pred HHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHH
Q 005580 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (690)
Q Consensus 231 ~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (690)
+=...++- ..|.+++|..++. +-.+ |..|=+- |-..|.+++|.++-+.-
T Consensus 804 akvAvLAi---------eLgMlEeA~~lYr-------~ckR---------~DLlNKl------yQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 804 AKVAVLAI---------ELGMLEEALILYR-------QCKR---------YDLLNKL------YQSQGMWSEAFEIAETK 852 (1416)
T ss_pred hHHHHHHH---------HHhhHHHHHHHHH-------HHHH---------HHHHHHH------HHhcccHHHHHHHHhhc
Confidence 01111111 3466777777763 1111 1111122 44456666665554322
Q ss_pred HHcCCCCCccccchhhhhhccc----------c---ccCCC----------chhhhhcCCCCChhhhHHHHHHHHHhccC
Q 005580 311 ENLGQFSNGHMKLNSQLLDGRS----------N---LERGP----------DDQSRKKDWSIDNQDADEIRLSEDAKKYA 367 (690)
Q Consensus 311 ~~~g~~Pd~~ty~~~~li~g~~----------~---~a~~~----------~~~m~~~g~~pd~~tyn~~lI~~~~k~g~ 367 (690)
-+--++..-.-|. .-+++-. + .|..+ ...-+++.-.|....|.. ..+-..|+
T Consensus 853 DRiHLr~Tyy~yA--~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWg---qYlES~Ge 927 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYA--KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWG---QYLESVGE 927 (1416)
T ss_pred cceehhhhHHHHH--HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHH---HHHhcccc
Confidence 1111111111111 1111110 0 01111 111222333345555555 23335688
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 005580 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (690)
Q Consensus 368 ~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~ 447 (690)
++.|+.+|...+. |-++++..|-.|+.++|-++-++- | |....-.|-..|-..|++.+|..+|-+
T Consensus 928 mdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 928 MDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888888887654 556677777777777777776542 1 334444555666666666666666654
Q ss_pred H
Q 005580 448 M 448 (690)
Q Consensus 448 M 448 (690)
.
T Consensus 993 A 993 (1416)
T KOG3617|consen 993 A 993 (1416)
T ss_pred H
Confidence 3
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=88.12 E-value=19 Score=40.89 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhh
Q 005580 192 FQLRVELDMCSKRGDVM--GAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~--~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~ 260 (690)
.-+++.=++|.|.++.. +-+.=+++|++.|-.|+.......+ +| .|.+.+|.++|.
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~-Ay------------~gKF~EAAklFk 656 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVF-AY------------QGKFHEAAKLFK 656 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHH-Hh------------hhhHHHHHHHHH
Confidence 45666777777776643 4444566788889889887655443 33 378889999985
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=87.54 E-value=9.7 Score=34.17 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=64.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---H-HHHHHHHHHHH
Q 005580 395 RMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE---E-PELEALLRVSV 468 (690)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd---~-~ty~~Li~~~~ 468 (690)
.++-..|+.++|..++++-...|..... ..+-.+-..+-..|+.++|..++++..... |+ . .....+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 4566789999999999999998876553 445556677888999999999999887642 43 1 11122234667
Q ss_pred HcCChHHHHHHHHHHHH
Q 005580 469 EAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 469 ~~g~~~~A~~ll~~M~~ 485 (690)
..|+.++|...+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88999999988765443
No 172
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.34 E-value=12 Score=39.19 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC---ccchhhc
Q 005580 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD---NNGQLDY 283 (690)
Q Consensus 207 ~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~---d~~tyn~ 283 (690)
+.+.+.+++.|++.|++-+.++|-+-.-...... .....-.+.+|..+| ..|.+++.+- +.+++.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~----~~~~~~~~~ra~~iy-------~~mKk~H~fLTs~~D~~~a~ 146 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE----KEDYDEIIQRAKEIY-------KEMKKKHPFLTSPEDYPFAA 146 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc----cccHHHHHHHHHHHH-------HHHHHhCccccCccchhHHH
Confidence 5566789999999999999988877544444210 000112355667777 3676654444 5666766
Q ss_pred cccc
Q 005580 284 GSSP 287 (690)
Q Consensus 284 LI~~ 287 (690)
|+.+
T Consensus 147 lLA~ 150 (297)
T PF13170_consen 147 LLAM 150 (297)
T ss_pred HHhc
Confidence 6666
No 173
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.13 E-value=56 Score=37.47 Aligned_cols=292 Identities=11% Similarity=0.047 Sum_probs=150.0
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCH--HHHHHHHH
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI--KLGQ--YHYNVLLY 234 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~--~pd~--~tyn~Ll~ 234 (690)
-+++.++.++|-+.+.....+...-....+.+...|.-+-+..+++-+.-..+.+=. ..+.|+ -+|. +.|++|-+
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvda-iiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDA-IIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHH-HHHhhcccCcHHHHHHHHHHHH
Confidence 566888999999999887654322222233344678888777777766554444322 223343 3554 56888888
Q ss_pred HHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHH---
Q 005580 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE--- 311 (690)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~--- 311 (690)
-|. +.|.+++|.++|. +.|..-..+. -|+.+-++ |++-..-.-+. .|.
T Consensus 257 YYI----------r~g~~ekarDvye------eai~~v~tvr---DFt~ifd~------Ya~FEE~~~~~----~me~a~ 307 (835)
T KOG2047|consen 257 YYI----------RSGLFEKARDVYE------EAIQTVMTVR---DFTQIFDA------YAQFEESCVAA----KMELAD 307 (835)
T ss_pred HHH----------HhhhhHHHHHHHH------HHHHhheehh---hHHHHHHH------HHHHHHHHHHH----HHhhhh
Confidence 888 8899999999995 2222210110 13333333 22111000000 011
Q ss_pred -HcCCCCCccccc-----hhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCC
Q 005580 312 -NLGQFSNGHMKL-----NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (690)
Q Consensus 312 -~~g~~Pd~~ty~-----~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p 385 (690)
+.|-.-|.+... ...|++..- .+.+...-+.-.-++.+|-. -+ -+..|+..+-...|.+.... +.|
T Consensus 308 ~~~~n~ed~~dl~~~~a~~e~lm~rr~----~~lNsVlLRQn~~nV~eW~k-RV--~l~e~~~~~~i~tyteAv~~-vdP 379 (835)
T KOG2047|consen 308 EESGNEEDDVDLELHMARFESLMNRRP----LLLNSVLLRQNPHNVEEWHK-RV--KLYEGNAAEQINTYTEAVKT-VDP 379 (835)
T ss_pred hcccChhhhhhHHHHHHHHHHHHhccc----hHHHHHHHhcCCccHHHHHh-hh--hhhcCChHHHHHHHHHHHHc-cCc
Confidence 000001111110 001111110 01111111111223334443 22 23456667777777777653 222
Q ss_pred ------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHH-------hcCChHHHHHHHHHHHhC-
Q 005580 386 ------NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-------NNGDVDKACSVEEHMLEH- 451 (690)
Q Consensus 386 ------d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~-------k~g~~~~A~~l~~~M~~~- 451 (690)
-...|..+-+.|-..|+++.|..+|++-.+... .+-+-|-..+| +..+++.|+++.+.....
T Consensus 380 ~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP 455 (835)
T KOG2047|consen 380 KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP 455 (835)
T ss_pred ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Confidence 234577888888889999999999987655432 23333333343 556667777776654311
Q ss_pred ---------C-CCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 452 ---------G-VYP------EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 452 ---------g-v~p------d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
| -.+ ....|...++.--..|-++....+++++.+. +-.+|.
T Consensus 456 ~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-riaTPq 512 (835)
T KOG2047|consen 456 TNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-RIATPQ 512 (835)
T ss_pred CchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hcCCHH
Confidence 1 111 2334555556556677777777788887765 234555
No 174
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=86.60 E-value=1.7 Score=35.23 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCC-cchHHHHHHHHHhcCChHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL----G-INPR-LRSYGPALSVFCNNGDVDKACSVEEH 447 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g-~~Pd-~~ty~~lI~~~~k~g~~~~A~~l~~~ 447 (690)
+|+.+-..|...|++++|++.|++..+. | -.|+ ..+|+.+-..|...|+.++|.+.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555555555555555544322 1 1122 33444444555555555555555544
No 175
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.60 E-value=53 Score=35.73 Aligned_cols=258 Identities=9% Similarity=-0.039 Sum_probs=133.3
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccc
Q 005580 195 RVELDMCS--KRGDVMGAIRLYDKAQR-EGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (690)
Q Consensus 195 n~lI~~~~--k~g~~~~A~~lf~~M~~-~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~ 271 (690)
..-|.+++ -.++-..|..+|-.+.. .-++-|++....+-+.+. ..|+.++|...|.. ..|.+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----------~~Gdn~~a~~~Fe~-----~~~~d 262 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----------YNGDYFQAEDIFSS-----TLCAN 262 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----------hhcCchHHHHHHHH-----HhhCC
Confidence 33444443 34666666666666553 346677888888888888 88999999999951 12222
Q ss_pred cCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc----cccCCCchhhhhcCC
Q 005580 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS----NLERGPDDQSRKKDW 347 (690)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~----~~a~~~~~~m~~~g~ 347 (690)
-..+...-.|..| +.+.|+.++...+...+.... -.|-. ...+.++- +.++..+ ....+.+
T Consensus 263 py~i~~MD~Ya~L---------L~~eg~~e~~~~L~~~Lf~~~----~~ta~-~wfV~~~~l~~~K~~~rAL-~~~eK~I 327 (564)
T KOG1174|consen 263 PDNVEAMDLYAVL---------LGQEGGCEQDSALMDYLFAKV----KYTAS-HWFVHAQLLYDEKKFERAL-NFVEKCI 327 (564)
T ss_pred hhhhhhHHHHHHH---------HHhccCHhhHHHHHHHHHhhh----hcchh-hhhhhhhhhhhhhhHHHHH-HHHHHHh
Confidence 2111111115555 445667777666666554321 00000 01111111 1111100 0111222
Q ss_pred CCChhhhHHHHH--HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchH
Q 005580 348 SIDNQDADEIRL--SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (690)
Q Consensus 348 ~pd~~tyn~~lI--~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (690)
..|.-..-..++ ..+...|+.++|.--|++...-. +-+...|--|++.|-..|++.+|.-+-+.-.+. +.-+..+.
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~L 405 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSL 405 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhh
Confidence 222222223233 34556788888888888766531 135678999999999999998887665543322 11122332
Q ss_pred HHH-HHHHH-hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 426 GPA-LSVFC-NNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 426 ~~l-I~~~~-k~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.+ -..|. .-.--|+|.++++.-.. +.|+-. .-+.+-..+...|+.+++..++++-...
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 222 01111 11223556666655433 334422 2334445556677777777777766655
No 176
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=86.33 E-value=5.2 Score=31.71 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=31.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 431 ~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|.+.+++++|.++++.+...+ +.+...|...=..+.+.|++++|...|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666665542 113444444455556666666666666666655
No 177
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=85.27 E-value=50 Score=39.23 Aligned_cols=228 Identities=11% Similarity=0.027 Sum_probs=141.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchh
Q 005580 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (690)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~ty 281 (690)
...+++..|+...+.+.+. .|| ..|..++.|+... +.|+.++|..+++ ..... +..|..|-
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~--------r~gk~~ea~~~Le-------~~~~~-~~~D~~tL 80 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLF--------RLGKGDEALKLLE-------ALYGL-KGTDDLTL 80 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHH--------HhcCchhHHHHHh-------hhccC-CCCchHHH
Confidence 4568899999999988764 244 3567777777743 6788999998874 22211 22277888
Q ss_pred hccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHH
Q 005580 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE 361 (690)
Q Consensus 282 n~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~ 361 (690)
.++-.. |...++.++|..+++...+. -|+..- . ..+--+
T Consensus 81 q~l~~~------y~d~~~~d~~~~~Ye~~~~~--~P~eel--------------------------------l-~~lFma 119 (932)
T KOG2053|consen 81 QFLQNV------YRDLGKLDEAVHLYERANQK--YPSEEL--------------------------------L-YHLFMA 119 (932)
T ss_pred HHHHHH------HHHHhhhhHHHHHHHHHHhh--CCcHHH--------------------------------H-HHHHHH
Confidence 888888 99999999999999876553 233110 0 114456
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC-CcchHHHHHH
Q 005580 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD----------GDMAFDMVKRMKSLGINP-RLRSYGPALS 430 (690)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~----------~~~A~~l~~~M~~~g~~P-d~~ty~~lI~ 430 (690)
|.+.+.+.+-.+.=-+|-+ ..+-+...|=++|+.+...-. +.-|.+.++.+.+.+-+. ...-.-.-+.
T Consensus 120 yvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 7776665443333222322 233355666666666665422 123666666666553111 1111112223
Q ss_pred HHHhcCChHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 005580 431 VFCNNGDVDKACSVEE-HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (690)
Q Consensus 431 ~~~k~g~~~~A~~l~~-~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p 492 (690)
.+-..|+.++|++++. ...+.-..-+...-+--++.+...+++.+..++-.++..+ +.+.
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k--~~Dd 259 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK--GNDD 259 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh--CCcc
Confidence 3445688999999884 4444444456666677788889999999999999999888 5544
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.96 E-value=14 Score=38.16 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cch
Q 005580 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRS 424 (690)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~t 424 (690)
.|.. .+..+.+.|++++|...|+.+...- |+. ..+-.+-..|...|++++|...|+.+.+.- |+ ...
T Consensus 145 ~Y~~-A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dA 219 (263)
T PRK10803 145 DYNA-AIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADA 219 (263)
T ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHH
Confidence 4555 5555567799999999999999753 432 466678888999999999999999998651 33 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005580 425 YGPALSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 425 y~~lI~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
+--+...+-..|+.++|.++|+...+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333445566899999999999988764
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=84.79 E-value=28 Score=35.37 Aligned_cols=87 Identities=8% Similarity=-0.076 Sum_probs=54.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCcchHHHHHHHHHhc
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNN 435 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~k~ 435 (690)
+|.-|=...-..+|...+..+... .-..-+ .+.+-|-+.|.+..|..=|+.+.+. +........-.++.+|-+.
T Consensus 150 li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l 225 (243)
T PRK10866 150 LVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL 225 (243)
T ss_pred HHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 555555555555555544444321 001111 4455688889998888888888875 3333344556788888899
Q ss_pred CChHHHHHHHHHH
Q 005580 436 GDVDKACSVEEHM 448 (690)
Q Consensus 436 g~~~~A~~l~~~M 448 (690)
|..++|..+..-+
T Consensus 226 g~~~~a~~~~~~l 238 (243)
T PRK10866 226 QLNAQADKVAKII 238 (243)
T ss_pred CChHHHHHHHHHH
Confidence 9999988876654
No 180
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=84.73 E-value=14 Score=40.72 Aligned_cols=63 Identities=14% Similarity=-0.035 Sum_probs=50.4
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005580 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (690)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (690)
...|++ +-.+|.+.|++++|...|++-.+. .||. .+|..+-.+|.+.|+.++|.+.+++..+.
T Consensus 75 a~a~~N-LG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVN-LGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666 778888899999999999887764 4553 46888899999999999999999888775
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=84.50 E-value=17 Score=37.73 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=72.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC--cchHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR--LRSYGPALS 430 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~-g~~~~A~~l~~~M~~~----g~~Pd--~~ty~~lI~ 430 (690)
.+..|.+.|++..|-+++.++- ..|-.. |++++|.+.+++-.+. | .+. ..++.-+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 5566777777777766655543 355555 7888888888775432 3 121 245667778
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-----CCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005580 431 VFCNNGDVDKACSVEEHMLEHGV-----YPEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTSV 487 (690)
Q Consensus 431 ~~~k~g~~~~A~~l~~~M~~~gv-----~pd~~t--y~~Li~~~~~~g~~~~A~~ll~~M~~~~ 487 (690)
.+.+.|+.++|.++|++....-+ .+++.. +.++| ++...|+...|.+.|++.....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhC
Confidence 89999999999999999876533 223322 23444 5566789999999999998763
No 182
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=84.37 E-value=12 Score=41.08 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc----hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005580 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~----ty~~lI~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
+.+...|+.+-.+|.+.|++++|+..|++-.+. .||.. +|..+-.+|.+.|+.++|.+.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346788999999999999999999999986654 57754 5899999999999999999999988775
No 183
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=84.24 E-value=15 Score=34.65 Aligned_cols=86 Identities=9% Similarity=-0.038 Sum_probs=35.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 005580 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN-NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (690)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k-~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (690)
...|++++|..+|+-.... .|....|--=+.++++ .|++++|...|.....-.. -|...+-.+=.++.+.|+.+.|
T Consensus 46 y~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 3444444444444444332 2333222222222222 3444444444444443331 2333333344444444444444
Q ss_pred HHHHHHHHHc
Q 005580 477 YYLLHKLRTS 486 (690)
Q Consensus 477 ~~ll~~M~~~ 486 (690)
.+-|+.-...
T Consensus 123 ~~aF~~Ai~~ 132 (157)
T PRK15363 123 IKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 184
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=84.02 E-value=5.3 Score=41.24 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=45.0
Q ss_pred ecCCCccccccCCccccccccccccccccccccccccccchhhccCcccccCCccCCcCC
Q 005580 81 TRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSREMSSGNSSLRSKD 140 (690)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (690)
.+-..+++.-+.+..++.+..+. +..++.+...+|....|+.+-.|++...........
T Consensus 31 f~da~vq~~~~~~gdle~vak~l-dssg~~l~~~rYgd~~fdil~~gg~~~pg~~~sddg 89 (412)
T KOG2297|consen 31 FRDAVVQGLEDNAGDLELVAKSL-DSSGNDLDYRRYGDILFDILFAGGRLQPGGVKSDDG 89 (412)
T ss_pred HHHHHHHHHHhcCccHHHHHHHH-HhccccccHHHHHHHHHHHHHHhcccCCCCcccccc
Confidence 55567888888888888888776 556678888999999999998888876655544443
No 185
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=83.22 E-value=27 Score=42.20 Aligned_cols=130 Identities=9% Similarity=0.056 Sum_probs=79.1
Q ss_pred CChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHH----------------
Q 005580 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS---LTAVGRMAMSMGDGDMAFDM---------------- 409 (690)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t---yn~LI~~~~~~g~~~~A~~l---------------- 409 (690)
|+.......||..|-..+++++|.++.++-.+. .|+... |..+ .+.+.++.++|..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHH
Confidence 443333334888888899999999998865543 343322 2222 44555555555444
Q ss_pred --HHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 410 --VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 410 --~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
...|...+ -+...+-.+-.+|-+.|+.++|..+|+++.+.. .-|....|-+-..|+.. ++++|..++.+-...
T Consensus 104 ~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 104 HICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 11111111 011445556666777788888888888888776 34667777777777777 777777776665443
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=83.16 E-value=20 Score=33.76 Aligned_cols=89 Identities=9% Similarity=-0.001 Sum_probs=70.7
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~-tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~ 438 (690)
.-+...|++++|..+|+-+..- .|... -|-.|=-++-..|++++|++.+........ -|...|-.+=.++.+.|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 4567899999999999998874 35444 455555566668999999999999887753 4667777788889999999
Q ss_pred HHHHHHHHHHHhC
Q 005580 439 DKACSVEEHMLEH 451 (690)
Q Consensus 439 ~~A~~l~~~M~~~ 451 (690)
+.|.+-|+..+..
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999976543
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.86 E-value=5.3 Score=31.25 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005580 390 LTAVGRMAMSMGDGDMAFDMVKRMKS 415 (690)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~ 415 (690)
|..+-..+...|++++|+..|.+..+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333344444444444444444333
No 188
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=82.66 E-value=94 Score=36.82 Aligned_cols=22 Identities=0% Similarity=-0.038 Sum_probs=16.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMC 379 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~ 379 (690)
|-..|-..|++.+|..+|-+.+
T Consensus 973 laR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHH
Confidence 5566777778888888887654
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=82.57 E-value=61 Score=34.46 Aligned_cols=106 Identities=14% Similarity=0.198 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005580 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (690)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (690)
..+.+..|.-+...|+...|.++..+. .+ ||..-|-.-|.+|+..+++++-.++-.. . -.++-|..+++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHH
Confidence 345666778888899999998887654 34 8999999999999999999887776432 1 234889999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHcchHHHHhh
Q 005580 467 SVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLG 511 (690)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~~~~~~~~a~ 511 (690)
|.+.|...+|..+..++. + -.-+..|.+.|...+|.
T Consensus 247 ~~~~~~~~eA~~yI~k~~-------~--~~rv~~y~~~~~~~~A~ 282 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKIP-------D--EERVEMYLKCGDYKEAA 282 (319)
T ss_pred HHHCCCHHHHHHHHHhCC-------h--HHHHHHHHHCCCHHHHH
Confidence 999999999998887732 1 23356666666655554
No 190
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.44 E-value=61 Score=33.04 Aligned_cols=123 Identities=10% Similarity=0.053 Sum_probs=90.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~---~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k 434 (690)
+.-+....|+.+.|...++++..+= |.. .-+.+| -+-..|.+++|.++++.+.+.. .-|.++|--=|...--
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 4444456788899999999988753 332 222222 1344688999999999988775 4566777655555556
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|.--+|.+-+.+-.+. +..|...|.-|-..|...|++++|.--+++|.-.
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 67777777766666554 6679999999999999999999999999999876
No 191
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.98 E-value=6.2 Score=41.00 Aligned_cols=99 Identities=10% Similarity=-0.038 Sum_probs=68.1
Q ss_pred ccchhhccccccccccccccCCChhhHHHHHHHHHHcC---CCCCccccchhhhhhccccccCCCchhhhhcCCCCChhh
Q 005580 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (690)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g---~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t 353 (690)
.+++-..++.. -.+..+++++...+-.+...- ..|+...|
T Consensus 63 s~~~Vd~~V~v------~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~------------------------------- 105 (418)
T KOG4570|consen 63 SSLTVDRLVDV------ISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH------------------------------- 105 (418)
T ss_pred ceeehhhhhhc------cccccchhHHHHHHHHHhcCcchhhhccccHH-------------------------------
Confidence 45555666666 666778888887776665431 22222222
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005580 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (690)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (690)
.+--++-.-+++++.-++..=...|+-||-+|++.||+.+.+.+++.+|..+.-.|...
T Consensus 106 ----~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 106 ----TWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ----HHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 23334455677888888888888888889999999999988888888888887776654
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=81.57 E-value=69 Score=36.52 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 005580 369 QRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (690)
Q Consensus 369 ~~A~~lf~~M~~~-g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~ 447 (690)
..+.+........ ....+...|.++--.+...|++++|...+++....+ |+...|..+-..+...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444433332 233455678777666667899999999999988775 7888999999999999999999999988
Q ss_pred HHhCCCCCCHHHHH
Q 005580 448 MLEHGVYPEEPELE 461 (690)
Q Consensus 448 M~~~gv~pd~~ty~ 461 (690)
... +.|...||-
T Consensus 479 A~~--L~P~~pt~~ 490 (517)
T PRK10153 479 AFN--LRPGENTLY 490 (517)
T ss_pred HHh--cCCCCchHH
Confidence 765 445555543
No 193
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=81.41 E-value=3.7 Score=33.15 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=49.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 423 RSYGPALSVFCNNGDVDKACSVEEHMLEH----GV-YPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 423 ~ty~~lI~~~~k~g~~~~A~~l~~~M~~~----gv-~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
.+|+.+-..|...|+.++|...|++..+. |- .|+ ..+++.|-..|...|+.++|.+++++-.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46888888999999999999999987643 21 233 56788888899999999999999987543
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=81.21 E-value=5.9 Score=31.38 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=26.7
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005580 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (690)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~ 415 (690)
|.+.+++++|.++++.+...+. .+...|...-..+.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555554421 1334444444555555555555555555443
No 195
>PLN02789 farnesyltranstransferase
Probab=80.59 E-value=73 Score=33.87 Aligned_cols=130 Identities=9% Similarity=-0.018 Sum_probs=93.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-ASLTAVGRMAMSMG-DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~-~tyn~LI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~ 435 (690)
+-..+...++.++|+.+.++..+. .|+. .+|+.--..+.+.| +++++++.++++.+..- -+..+|+.---.+-+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 445667788999999999998874 3444 34555545556667 67999999999887632 2334565443344455
Q ss_pred CC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 436 GD--VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 436 g~--~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
|. .+++..+++.|.+..- -|...|+..--.+.+.|+++++++.++++.+. .+...
T Consensus 120 ~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~ 176 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNN 176 (320)
T ss_pred CchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCch
Confidence 55 3678888888887543 37788888888888889999999999999987 55444
No 196
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.56 E-value=14 Score=38.44 Aligned_cols=103 Identities=10% Similarity=0.046 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 005580 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (690)
Q Consensus 382 g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ 458 (690)
|......|...++..-....+++++...+-.+... -..|+...|+ +| -+|-.-+.+++..+...=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~i-rlllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WI-RLLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HH-HHHHccChHHHHHHHhCcchhccccchh
Confidence 44444445555555545455555555555554432 1233333332 11 2223334555555555555556666666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+++.||+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6666666666666666555555554443
No 197
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=80.13 E-value=32 Score=40.78 Aligned_cols=118 Identities=18% Similarity=0.193 Sum_probs=92.0
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHH
Q 005580 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~--~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~ 440 (690)
...+++..|+...+.+.++. ||. .|..++.++ .+.|+.++|..+++.....+.. |..|..++-..|-..|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 45678899999998877652 443 456666665 4689999999999988776654 88999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
|..+|++... ..|+..-...+..+|.+.+.+.+-.+.=-+|-+.
T Consensus 96 ~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 96 AVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN 139 (932)
T ss_pred HHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999865 4688888889999999999887544443344333
No 198
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.38 E-value=42 Score=31.70 Aligned_cols=18 Identities=0% Similarity=-0.071 Sum_probs=8.5
Q ss_pred HhccCHHHHHHHHHHHHh
Q 005580 363 AKKYAFQRGFEIYEKMCL 380 (690)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~ 380 (690)
.+.++.+++..+++-|.-
T Consensus 21 l~~~~~~D~e~lL~ALrv 38 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV 38 (160)
T ss_pred HccCChHHHHHHHHHHHH
Confidence 344445555555554443
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=78.33 E-value=37 Score=37.18 Aligned_cols=58 Identities=22% Similarity=0.422 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhh
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G-~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~ 260 (690)
+.|...|+..-|..-++.|..+|-+..+.| +.++++.|+++|.-+| .|+..-|..+|.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-----------~~d~~ta~~ife 456 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-----------TGDRATAYNIFE 456 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-----------cCCcchHHHHHH
Confidence 778888888888888888888998888888 5688888888888888 344555666663
No 200
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=78.01 E-value=56 Score=31.17 Aligned_cols=102 Identities=12% Similarity=0.155 Sum_probs=72.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005580 372 FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 372 ~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
.+.+..+.+.|+.|+...|..+|+.+.+.|+... +..+...++-||...-...+-.+.. ....+.++=-+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 5667777788999999999999999999998654 4455567888888877776644433 233444444444432
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005580 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (690)
Q Consensus 452 gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (690)
= ...+..+++.+...|++-+|.++.+..
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0 124567788889999999999988775
No 201
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=77.80 E-value=96 Score=34.26 Aligned_cols=174 Identities=7% Similarity=0.023 Sum_probs=107.0
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
+-+.+++.+|.++|.+..++- ..+...+. ...+...+|++|... +++....
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lk---------------------------eEvl~grilnAffl~-nld~Me~ 66 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLK---------------------------EEVLGGRILNAFFLN-NLDLMEK 66 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHH---------------------------HHHHhhHHHHHHHHh-hHHHHHH
Confidence 446788999999998876542 11111111 011122277777544 3455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHC--CCC------------CCcchHHHHHHHHHhcCC
Q 005580 374 IYEKMCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSL--GIN------------PRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~LI~~~--~~~g~~~~A~~l~~~M~~~--g~~------------Pd~~ty~~lI~~~~k~g~ 437 (690)
.+.+..+. .| ...|-.|..++ -+.++.++|.+.|..-.+. +-+ +|..-=+..++++.+.|+
T Consensus 67 ~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~ 143 (549)
T PF07079_consen 67 QLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR 143 (549)
T ss_pred HHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC
Confidence 55555543 12 22344444443 4678889998888776654 322 233444677888899999
Q ss_pred hHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCChhHHHHHHHHHcchHH
Q 005580 438 VDKACSVEEHMLEH----GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT-SVRKVSPSTADVIAKWFNSKEA 507 (690)
Q Consensus 438 ~~~A~~l~~~M~~~----gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~-~~~g~~p~t~~~I~~~~~~~~~ 507 (690)
+.+|..++++|... ...-|..+||.++-.+.+. +|-++++ ....+-|+-|.+|..|.+.-..
T Consensus 144 f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~ 210 (549)
T PF07079_consen 144 FSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHA 210 (549)
T ss_pred cchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 99999998888654 4558999999987777653 4444432 2224667778887777665444
No 202
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.47 E-value=56 Score=30.33 Aligned_cols=102 Identities=8% Similarity=0.047 Sum_probs=75.9
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCC---C--CCCcchHHHHHHHHHhcCC-hHHHHHHH
Q 005580 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSMGDGDMAFDMVKRMKSLG---I--NPRLRSYGPALSVFCNNGD-VDKACSVE 445 (690)
Q Consensus 374 lf~~M~~~g~~pd~~--tyn~LI~~~~~~g~~~~A~~l~~~M~~~g---~--~Pd~~ty~~lI~~~~k~g~-~~~A~~l~ 445 (690)
...-|++.+..++.. ..|+++.-.+..+.+.-...+++.+..-. + .-|-.+|.+++.+..+..- ---+..+|
T Consensus 24 ~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf 103 (145)
T PF13762_consen 24 HLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLF 103 (145)
T ss_pred HHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHH
Confidence 334456667777764 46888888888888888888888774321 0 2466789999999977766 45577899
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 005580 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (690)
Q Consensus 446 ~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~ 475 (690)
+-|.+.+.+++..-|..||.++.+.-..+.
T Consensus 104 ~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 104 NFLKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 999998899999999999999776544433
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=75.71 E-value=12 Score=29.25 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=51.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHc
Q 005580 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-KGDRVYYLLHKLRTS 486 (690)
Q Consensus 422 ~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g-~~~~A~~ll~~M~~~ 486 (690)
..+|..+=..+...|++++|...|++..+.. .-+...|..+=.+|.+.| ++++|+..+++-.+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4567777778899999999999999988863 226667777888888899 799999998886654
No 204
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=74.69 E-value=40 Score=38.51 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=47.8
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcch-H----------HHHHHH
Q 005580 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS-Y----------GPALSV 431 (690)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t-y----------~~lI~~ 431 (690)
-+...+.-|-++|..|-. .-+++......++|++|+.+-+...+. .||++. | --.=.+
T Consensus 758 k~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred hhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHH
Confidence 344567788899988864 346778888999999999998766543 566532 2 222234
Q ss_pred HHhcCChHHHHHHHHHH
Q 005580 432 FCNNGDVDKACSVEEHM 448 (690)
Q Consensus 432 ~~k~g~~~~A~~l~~~M 448 (690)
|-++|+-.+|.++++++
T Consensus 827 fhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQL 843 (1081)
T ss_pred HHHhcchHHHHHHHHHh
Confidence 44555555555555544
No 205
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=74.42 E-value=48 Score=37.30 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=90.5
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCC---CCCCcchHHHHHHHHHhcCChHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMKSLG---INPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~-~~~~~g~~~~A~~l~~~M~~~g---~~Pd~~ty~~lI~~~~k~g~~~~ 440 (690)
....+.|.++++++..+ -|+...|...-. .+...|++++|.+.|+...... -+.....|--+.-.++-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 56789999999999985 588877765554 4456899999999999755321 11122334444555777899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCh-------HHHHHHHHHHHHcC-----CCCChhHHHH--HHHHHcch
Q 005580 441 ACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKG-------DRVYYLLHKLRTSV-----RKVSPSTADV--IAKWFNSK 505 (690)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~-------~~A~~ll~~M~~~~-----~g~~p~t~~~--I~~~~~~~ 505 (690)
|.+.|..+.+.. .-...+|..+..+| ...|+. ++|.++|.+..... ..++-+.+-+ +..|....
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~~ 402 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQA 402 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhcC
Confidence 999999998753 22455555555444 456666 88888888875431 1233334433 66665553
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=74.41 E-value=89 Score=30.44 Aligned_cols=123 Identities=11% Similarity=0.049 Sum_probs=87.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCcchHHHHHHHHHh
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG---INPRLRSYGPALSVFCN 434 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g---~~Pd~~ty~~lI~~~~k 434 (690)
|-.++...|+..+|...|++-..-=..-|....-.+.++....+++.+|..+++.+-+.. -.||.. -.+-..+.-
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--Ll~aR~laa 172 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--LLFARTLAA 172 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--HHHHHHHHh
Confidence 667888999999999999988764455677888888888888999999999999887763 334432 233456777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005580 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (690)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (690)
.|..+.|..-|+...+. .|+...-...-..+.+.|+.++|..-+..+.
T Consensus 173 ~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 173 QGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred cCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88888899888887764 4444333333344577887776655444433
No 207
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=74.29 E-value=1.4e+02 Score=32.51 Aligned_cols=248 Identities=15% Similarity=0.094 Sum_probs=144.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCcc--c
Q 005580 203 KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS-SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN--G 279 (690)
Q Consensus 203 k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~-~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~--~ 279 (690)
-.|+.+.|.+-|+.|.. |+.|--.=|.++. .+. +.|.-+-|...-. +-- +.-+. .
T Consensus 132 ~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAq-------r~GareaAr~yAe-------~Aa---~~Ap~l~W 189 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQ-------RLGAREAARHYAE-------RAA---EKAPQLPW 189 (531)
T ss_pred hcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHH-------hcccHHHHHHHHH-------HHH---hhccCCch
Confidence 46999999999999985 3333222233322 122 3455444443331 110 22232 3
Q ss_pred hhhccccccccccccccCCChhhHHHHHHHHHHcC-CCCCccccchhhhhhccc------cccCCCchhhhhcCCCCChh
Q 005580 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRS------NLERGPDDQSRKKDWSIDNQ 352 (690)
Q Consensus 280 tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g-~~Pd~~ty~~~~li~g~~------~~a~~~~~~m~~~g~~pd~~ 352 (690)
.+.+.+.. .|..|+|+.|+++++.-+... +.||+.--.-..|+.+-. +.+...-.......+.||.+
T Consensus 190 A~~AtLe~------r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlv 263 (531)
T COG3898 190 AARATLEA------RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLV 263 (531)
T ss_pred HHHHHHHH------HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccc
Confidence 35677788 999999999999998766543 455554333222333322 11111222233345666665
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCc-chHHHHHH
Q 005580 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRL-RSYGPALS 430 (690)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~-~ty~~lI~ 430 (690)
--..+--..|.+.|++.++-.|++.+-+....|++. ++-.+.+.|+. +.+-++..++. .++||. .+--++..
T Consensus 264 Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~ 337 (531)
T COG3898 264 PAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAE 337 (531)
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 544434477889999999999999998887777753 22234455543 33333333322 344543 45556667
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHc
Q 005580 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE-AGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 431 ~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~-~g~~~~A~~ll~~M~~~ 486 (690)
+....|++..|..--+...+ ..|....|-.|-+.-.. .|+-.++...+-+-...
T Consensus 338 aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 338 AALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77788888877654443322 46788888777666543 48888887777766655
No 208
>PHA02875 ankyrin repeat protein; Provisional
Probab=73.39 E-value=59 Score=35.61 Aligned_cols=36 Identities=19% Similarity=-0.095 Sum_probs=18.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHH
Q 005580 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQYH--YNVLLYLCS 237 (690)
Q Consensus 198 I~~~~k~g~~~~A~~lf~~M~~~G~~pd~~t--yn~Ll~~~~ 237 (690)
|...++.|+++.+.. +.+.|..|+... ..+.|+.++
T Consensus 6 L~~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~ 43 (413)
T PHA02875 6 LCDAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAM 43 (413)
T ss_pred HHHHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHH
Confidence 334455666654433 344677666533 234444444
No 209
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=73.38 E-value=29 Score=31.56 Aligned_cols=89 Identities=8% Similarity=-0.004 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005580 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (690)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (690)
...+|..+...+.+.....+++.+...+. .+...+|.+|..|++... ++..+.+.. .++......+++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 45678888888899999999999988874 677889999999998743 344444442 1234444557888888
Q ss_pred cCChHHHHHHHHHHHHc
Q 005580 470 AGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 470 ~g~~~~A~~ll~~M~~~ 486 (690)
.+.++++..++.++...
T Consensus 82 ~~l~~~~~~l~~k~~~~ 98 (140)
T smart00299 82 AKLYEEAVELYKKDGNF 98 (140)
T ss_pred cCcHHHHHHHHHhhcCH
Confidence 88888888888777543
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=72.29 E-value=32 Score=31.81 Aligned_cols=70 Identities=14% Similarity=0.137 Sum_probs=33.3
Q ss_pred hccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCcchHHHHHHHHHh
Q 005580 364 KKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCN 434 (690)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~--~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~~~~k 434 (690)
+.|++++|.+.|+.+..+-. .-..-.---|+.+|.+.+++++|...++...+.. -.|+ +-|.-.+.|++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 55566666666666555411 1122333445555555566665555555555442 1122 334444444443
No 211
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=72.24 E-value=31 Score=37.82 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=35.7
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhc
Q 005580 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDE----VPMNEASLTAVGRMAMSM 400 (690)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g----~~pd~~tyn~LI~~~~~~ 400 (690)
+..+.++.+...|++.++..++++|..+= ..-|..+||-++-.+++.
T Consensus 130 l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 130 LDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 34557788889999999999988887643 347888888877776653
No 212
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=71.69 E-value=32 Score=35.72 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=49.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCCCCChh--HHHHH
Q 005580 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT---SVRKVSPS--TADVI 498 (690)
Q Consensus 424 ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~---~~~g~~p~--t~~~I 498 (690)
++..++..+...|+.+.+.+.++++.... .-|...|..||.+|.+.|+...|+..++.+.+ .-.|+.|. +....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566666777777777777777776543 23677777777777777777777777776654 22245554 44443
Q ss_pred HHHHc
Q 005580 499 AKWFN 503 (690)
Q Consensus 499 ~~~~~ 503 (690)
....+
T Consensus 234 ~~~~~ 238 (280)
T COG3629 234 EEILR 238 (280)
T ss_pred HHHhc
Confidence 33333
No 213
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.53 E-value=93 Score=29.42 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=74.5
Q ss_pred HHHHHHHH---HHhcCChHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005580 389 SLTAVGRM---AMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (690)
Q Consensus 389 tyn~LI~~---~~~~g~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (690)
+.+.||+. -.+.++.+++..++..|.-. --.|...+|-..| +.+.|++.+|..+|+++.+.. |......+|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALl 84 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHH
Confidence 34455543 34578999999999998764 1224445666655 467899999999999987764 5555556666
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHcchHH
Q 005580 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEA 507 (690)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~~~~~~ 507 (690)
..|.....-..=...-+++.+. +..|++..++..+......
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~--~~d~~a~~Lv~~Ll~~~~~ 125 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLES--GADPDARALVRALLARADL 125 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhc--CCChHHHHHHHHHHHhccc
Confidence 6665544433333444556677 7788877777776655443
No 214
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.02 E-value=1.9 Score=39.66 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=62.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+|+.+-+.+.++....+++.+...+..-+....|.|+..|++.++.++..++++ ..+.+-...++..|-+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcch
Confidence 667777788888888888888887766778888999999999988888888876 1233444667777777787
Q ss_pred hHHHHHHHHHH
Q 005580 438 VDKACSVEEHM 448 (690)
Q Consensus 438 ~~~A~~l~~~M 448 (690)
+++|.-++..+
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 77777777654
No 215
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=70.60 E-value=53 Score=31.62 Aligned_cols=97 Identities=15% Similarity=0.071 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCC----HH
Q 005580 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLE---HGVYPE----EP 458 (690)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~k~g~~~~A~~l~~~M~~---~gv~pd----~~ 458 (690)
..+..+.+-|++.|+.++|.+.+.++......|. +..+-.+|....-.|++..+.....+... .|-.++ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455666666666666666666666665533222 23345555555566666666555544332 221111 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|..|.. ...+++.+|-++|-+....
T Consensus 117 ~~~gL~~--l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLAN--LAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHH--HHhchHHHHHHHHHccCcC
Confidence 2222221 3456777777777666543
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=69.42 E-value=61 Score=31.74 Aligned_cols=73 Identities=14% Similarity=0.016 Sum_probs=47.4
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCS 237 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G-~~pd~~tyn~Ll~~~~ 237 (690)
.-..|+..+|.+.|+.+... -|.....|+ ..-.+..++-+.|+++.|...|++..+.- -.|. .-+.-.+.|.+
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~--A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~ 88 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDR--YPNSPYAPQ--AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLS 88 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH---TTSTTHHH--HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCChHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHH
Confidence 34678999999999999765 244444454 33466888999999999999999988642 2222 23444444444
No 217
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=69.33 E-value=1.6e+02 Score=34.62 Aligned_cols=200 Identities=10% Similarity=-0.051 Sum_probs=104.7
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccc
Q 005580 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (690)
Q Consensus 188 ~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~ 267 (690)
.-|...|..+--++.+.|++..+-+.|++.... +--....|+.+=..|+ -+|.-..|..++. .
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~s----------aag~~s~Av~ll~------~ 382 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYS----------AAGSDSKAVNLLR------E 382 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHH----------HhccchHHHHHHH------h
Confidence 346688888888999999999999999987643 2234556666666666 5667778888874 1
Q ss_pred cccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHH--cCCCCCccccchhhhhhccc-------------
Q 005580 268 ELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN--LGQFSNGHMKLNSQLLDGRS------------- 332 (690)
Q Consensus 268 em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~--~g~~Pd~~ty~~~~li~g~~------------- 332 (690)
.+.....+ ++.+--.|+.. .-+-+.+.++++...-.+... .|..-+.-.- +.+..|.|
T Consensus 383 ~~~~~~~p-s~~s~~Lmask----lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~se 455 (799)
T KOG4162|consen 383 SLKKSEQP-SDISVLLMASK----LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSE 455 (799)
T ss_pred hcccccCC-CcchHHHHHHH----HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHH
Confidence 12221111 11221111111 112233445555444433333 1111111010 02223322
Q ss_pred -----cccCCCchhhhh-cCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005580 333 -----NLERGPDDQSRK-KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (690)
Q Consensus 333 -----~~a~~~~~~m~~-~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A 406 (690)
.++...+++.++ .+-.|+++-|-+ + -|+-.++++.|++...+..+-+-.-+...|--|.-.+...+++.+|
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~la-l--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLA-L--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHH-H--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 112222223222 233444444433 2 4556667777777777776665555667777777777777777777
Q ss_pred HHHHHHHH
Q 005580 407 FDMVKRMK 414 (690)
Q Consensus 407 ~~l~~~M~ 414 (690)
+.+++.-.
T Consensus 533 l~vvd~al 540 (799)
T KOG4162|consen 533 LDVVDAAL 540 (799)
T ss_pred HHHHHHHH
Confidence 77766543
No 218
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=65.99 E-value=1e+02 Score=32.09 Aligned_cols=139 Identities=9% Similarity=0.169 Sum_probs=95.9
Q ss_pred ccCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChHH
Q 005580 365 KYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMS-MG-DGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~-~g~~pd~~tyn~LI~~~~~-~g-~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~k~g~~~~ 440 (690)
+..+.+|+++|+...- ..+.-|..+...|++.... .+ ....-.++.+.+... |-.++.-+-.++|..+++.++..+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3355678888884333 3455677777777776665 22 334445666666544 567888888999999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-----HHHcCCCCChhHHHHHHHHHc
Q 005580 441 ACSVEEHMLEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHK-----LRTSVRKVSPSTADVIAKWFN 503 (690)
Q Consensus 441 A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~-----M~~~~~g~~p~t~~~I~~~~~ 503 (690)
-+++++.-... +..-|...|..+|+...+.|+..-...+..+ +++....++|+.-..|..+|+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 99999887665 5666889999999999999998755555443 223322355556666777665
No 219
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=65.80 E-value=1.3e+02 Score=28.78 Aligned_cols=127 Identities=11% Similarity=0.139 Sum_probs=83.1
Q ss_pred hhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCC
Q 005580 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINP 420 (690)
Q Consensus 343 ~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g--~~~~A~~l~~~M~~~g~~P 420 (690)
...++.|+...|.- +|+.+.+.|++ ..+..+...++-||.......+-.+.... -..-|.+++.++..
T Consensus 21 ~~~~i~~~~~L~~l-li~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~----- 90 (167)
T PF07035_consen 21 NQHNIPVQHELYEL-LIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT----- 90 (167)
T ss_pred HHcCCCCCHHHHHH-HHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh-----
Confidence 34455555555555 99999999984 45566777788888877776665444322 13345555655543
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 421 d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|..++..+...|++-+|.++....... +......++.+-.+.++...-..+|+...++
T Consensus 91 ---~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 91 ---AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ---hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3778888999999999999998775221 2233355777777777766555555555543
No 220
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=65.08 E-value=61 Score=31.18 Aligned_cols=90 Identities=16% Similarity=0.081 Sum_probs=65.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCc----chHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRL----RSYGPA 428 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~--~tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~----~ty~~l 428 (690)
+-+-|++.|+.++|.+.|.++.+....|.. ..+-.+|+...-.+++..+...+.+.... |-.++. ..|..|
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL 121 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGL 121 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 778999999999999999999987655544 45778888899999999988888776543 222222 233333
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 005580 429 LSVFCNNGDVDKACSVEEHML 449 (690)
Q Consensus 429 I~~~~k~g~~~~A~~l~~~M~ 449 (690)
. +...+++.+|-++|-+..
T Consensus 122 ~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 122 A--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred H--HHHhchHHHHHHHHHccC
Confidence 2 234688999888887654
No 221
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=64.96 E-value=76 Score=33.06 Aligned_cols=96 Identities=16% Similarity=0.077 Sum_probs=56.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHH
Q 005580 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDR 475 (690)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~ 475 (690)
+.+.+++.+|++.+.+-.+. ..-|.+-|..=-.+|++.|..+.|.+=.+.-+. +.|. ..+|..|=.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 45666777777777766554 122445555566677777777777665554433 2222 3466666677777777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHH
Q 005580 476 VYYLLHKLRTSVRKVSPSTADV 497 (690)
Q Consensus 476 A~~ll~~M~~~~~g~~p~t~~~ 497 (690)
|.+-|++-.+- .|.-.+|..
T Consensus 168 A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHH
Confidence 77777665554 333335544
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=63.52 E-value=1.5e+02 Score=28.92 Aligned_cols=154 Identities=8% Similarity=0.005 Sum_probs=83.3
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
+-..|++++|...|+++... -|+.---. +. . -.+..++-+.|+.++|..
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~--------------------------~A--~-l~la~a~y~~~~y~~A~~ 63 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDR--YPNSPYAP--------------------------QA--Q-LMLAYAYYKQGDYEEAIA 63 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH---TTSTTHH--------------------------HH--H-HHHHHHHHHTT-HHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCChHHH--------------------------HH--H-HHHHHHHHHcCCHHHHHH
Confidence 45678899999999988775 23221110 00 0 116678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------cchHHHHHHHHHhcCChHHHHHHHH
Q 005580 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-------LRSYGPALSVFCNNGDVDKACSVEE 446 (690)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-------~~ty~~lI~~~~k~g~~~~A~~l~~ 446 (690)
.|+++...-..-..+-+.-.+.|.+......... -...| ...|..+|.-|=...-..+|...+.
T Consensus 64 ~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~ 134 (203)
T PF13525_consen 64 AYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLA 134 (203)
T ss_dssp HHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch---------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHH
Confidence 9998876532222334444444444322211110 00011 1235555555656666666666555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 447 ~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
++.+. .-... -.+-+-|.+.|.+..|..-++.+.++ .+...
T Consensus 135 ~l~~~---la~~e-~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~ 175 (203)
T PF13525_consen 135 ELRNR---LAEHE-LYIARFYYKRGKYKAAIIRFQYVIEN--YPDTP 175 (203)
T ss_dssp HHHHH---HHHHH-HHHHHHHHCTT-HHHHHHHHHHHHHH--STTSH
T ss_pred HHHHH---HHHHH-HHHHHHHHHcccHHHHHHHHHHHHHH--CCCCc
Confidence 54321 00111 12456788999999999999999988 54433
No 223
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=63.14 E-value=55 Score=33.96 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 005580 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELEA 462 (690)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~-----~gv~pd~~ty~~ 462 (690)
.+++.++..+...|+.+.+...++++.... .-|...|-.+|.+|.+.|+...|...|+.+.+ -|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456666777777777777777777766552 23666777777777777777777776665543 477777777776
Q ss_pred HHHHH
Q 005580 463 LLRVS 467 (690)
Q Consensus 463 Li~~~ 467 (690)
.....
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 66663
No 224
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=63.13 E-value=45 Score=30.50 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=38.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (690)
-++.+.+.|+-+.-.+++.++.+ .-.|+....-.+-.+|.+.|+..+|.+++++..+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 56777777777777777777664 2345666666777778888888888887777777765
No 225
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=63.09 E-value=13 Score=25.28 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 005580 390 LTAVGRMAMSMGDGDMAFDMVKR 412 (690)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~ 412 (690)
|+.|-+.|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666666666666666655
No 226
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=62.95 E-value=1.8 Score=39.82 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=59.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005580 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (690)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g 471 (690)
.+|+.+-+.+.+..+..+++.+...+-.-+....+.++..|++.+..++..++++.. +..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 356666777788888888888887665566777888888888887777777777621 1133345667777777
Q ss_pred ChHHHHHHHHHHHHc
Q 005580 472 KGDRVYYLLHKLRTS 486 (690)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (690)
.+++|..++.++...
T Consensus 85 l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNH 99 (143)
T ss_dssp SHHHHHHHHHCCTTH
T ss_pred hHHHHHHHHHHcccH
Confidence 777777777665443
No 227
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=62.51 E-value=80 Score=32.82 Aligned_cols=99 Identities=8% Similarity=0.084 Sum_probs=74.9
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChHHHHHHHHH-
Q 005580 371 GFEIYEKMCL-DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEH- 447 (690)
Q Consensus 371 A~~lf~~M~~-~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~- 447 (690)
-.++.+-+.. .|-.++..+..++|..++..+++.+-++++..-... +..-|.+-|..+|......|+..-..++.++
T Consensus 185 lYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 185 LYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 3455555553 357788899999999999999999999999877655 5667899999999999999998777776664
Q ss_pred ----HHhCCCCCCHHHHHHHHHHHHH
Q 005580 448 ----MLEHGVYPEEPELEALLRVSVE 469 (690)
Q Consensus 448 ----M~~~gv~pd~~ty~~Li~~~~~ 469 (690)
+.+.|+..+...-..|-..+-+
T Consensus 265 hLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 265 HLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred CeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 3455676666666655554433
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=62.17 E-value=1.3e+02 Score=27.66 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=65.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC----------------CCCcchHHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GI----------------NPRLRSYGP 427 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~----------------~Pd~~ty~~ 427 (690)
.|.+++..++..+..... +..-||-+|--....-+-+-..++++.+-+. .+ .-+..-+..
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~ 91 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDL 91 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHH
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHH
Confidence 355677778877776532 3444555554333333333333333332111 00 012233455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 005580 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (690)
Q Consensus 428 lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p 492 (690)
.++.+.+.|.-+.-.++..++.+ .-.|+....-.+-.+|.+-|...++-+++.+--++ |+..
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek--G~kE 153 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK--GLKE 153 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT--T-HH
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh--chHH
Confidence 66677777777777777777765 34677777778888888888888888888887777 5443
No 229
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.35 E-value=96 Score=32.34 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=79.5
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcCChH
Q 005580 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVD 439 (690)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~k~g~~~ 439 (690)
-..+.+++++|+..|.+-.+-. +-|.+-|..=..+|++.|..+.|++=.+.-... .|. ..+|..|=-+|.-.|+.+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 3568899999999999998753 246777888889999999999998776654443 233 368888888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005580 440 KACSVEEHMLEHGVYPEEPELEALLRV 466 (690)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (690)
+|.+.|+.-.+ +.|+-.+|-.=|+.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99999988765 78988877655543
No 230
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=61.21 E-value=22 Score=43.27 Aligned_cols=73 Identities=10% Similarity=0.083 Sum_probs=35.7
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHH
Q 005580 363 AKKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~t--yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~ 440 (690)
-.+|++++|+.+-.+|... -|... --.|+.-+...++.-+|-++..+-... +.-.+.-||++..+++
T Consensus 976 ~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEE 1044 (1265)
T ss_pred HHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHH
Confidence 3445555555555554321 12221 134455555556666665555554433 2334445556666666
Q ss_pred HHHHHH
Q 005580 441 ACSVEE 446 (690)
Q Consensus 441 A~~l~~ 446 (690)
|..+-.
T Consensus 1045 Alrva~ 1050 (1265)
T KOG1920|consen 1045 ALRVAS 1050 (1265)
T ss_pred HHHHHH
Confidence 665544
No 231
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=60.84 E-value=17 Score=24.61 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005580 193 QLRVELDMCSKRGDVMGAIRLYDKAQ 218 (690)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~ 218 (690)
+|+.|=+.|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999954
No 232
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=60.75 E-value=1.4e+02 Score=31.11 Aligned_cols=107 Identities=19% Similarity=0.135 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCcch-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH
Q 005580 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRS-YGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELE 461 (690)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~t-y~~lI~~~~k~g~~~~A~~l~~~M~~~gv~p-d~~ty~ 461 (690)
-|.-.|-.|=..|...|+.+.|..-|..-.+. |-.|++.. |...+..-....+..+|..+|+++... .| |+.+-.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHH
Confidence 47788999999999999999999999887664 54454432 333333333334567788999998874 34 444455
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH
Q 005580 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (690)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~ 495 (690)
.|=-.+...|++.+|...++.|.+. .+..+.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--CCCCCch
Confidence 5556778899999999999999988 4444433
No 233
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=60.28 E-value=47 Score=28.85 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 005580 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (690)
Q Consensus 370 ~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (690)
+..+-++.+-...+.|+.....+.+++|-+..++..|.++|+-.+.+ +.+....|.-+|.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555666666778888888888888888888888888888877755 3333336766664
No 234
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=59.68 E-value=1.1e+02 Score=28.29 Aligned_cols=90 Identities=9% Similarity=0.087 Sum_probs=66.1
Q ss_pred HHhcCChHHHHHHHHHHHHCC-C-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--
Q 005580 397 AMSMGDGDMAFDMVKRMKSLG-I-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK-- 472 (690)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g-~-~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~-- 472 (690)
..+.|++++|.+.|+.+...= . .-....---|+.+|.+.|+.++|...+++.++..-.--.+-|...+.|++.-..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 346799999999999998761 1 112245567899999999999999999998876433223566667777654332
Q ss_pred ---------------hHHHHHHHHHHHHc
Q 005580 473 ---------------GDRVYYLLHKLRTS 486 (690)
Q Consensus 473 ---------------~~~A~~ll~~M~~~ 486 (690)
..+|..-|.++.+.
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 56888889988887
No 235
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=59.62 E-value=1.1e+02 Score=34.35 Aligned_cols=73 Identities=7% Similarity=0.017 Sum_probs=49.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCcchHHHHHHHH
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVF 432 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~ 432 (690)
...-+.|+.++|.+.|.+|.+..-. -+....-.||.++-..+...++..++.+-.+... +.-..+|+..+-.+
T Consensus 267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 3445678999999999999764322 2344677889999999999999999887543322 12235677755433
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.48 E-value=2.3e+02 Score=29.64 Aligned_cols=130 Identities=10% Similarity=0.082 Sum_probs=86.6
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChH
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~ 439 (690)
......|++.+|..+|+......-. +...--.|+++|...|+.+.|..++..+...--......-..-|.-+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3566788999999999988765322 234556788999999999999999998865522222222223344444444444
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 440 KACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 440 ~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
+...+-.+.-. .| |...--.|-..|...|+.++|.+.|=.+..+.++...+
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~ 272 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG 272 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc
Confidence 44444444432 35 66666677788899999999998887777765555555
No 237
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.69 E-value=36 Score=38.61 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=77.1
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHH
Q 005580 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (690)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A 441 (690)
..+.|+++.|.++-.+.. ++.-|..|=++..+.|++..|.+.|..-. -|..|+-.+...|+.+.-
T Consensus 647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCChhHH
Confidence 347788888888877654 66789999999999999999999987533 367788888888888776
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005580 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (690)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (690)
..+-..-.+.|.. |.-.-+|...|+++++.++|-+-
T Consensus 712 ~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 6676666666642 44555667789999999887664
No 238
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.60 E-value=1.4e+02 Score=33.82 Aligned_cols=144 Identities=14% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccchhhcc
Q 005580 207 VMGAIRLYDKAQ-REGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYG 284 (690)
Q Consensus 207 ~~~A~~lf~~M~-~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~L 284 (690)
+.+..++|-++. ..+..+|...++.|=-.|- -.|.+++|.+.|. .-+..+ + |-..||-|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~----------ls~efdraiDcf~------~AL~v~---Pnd~~lWNRL 470 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYN----------LSGEFDRAVDCFE------AALQVK---PNDYLLWNRL 470 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh----------cchHHHHHHHHHH------HHHhcC---CchHHHHHHh
Q ss_pred ccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHh
Q 005580 285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (690)
Q Consensus 285 I~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (690)
=.. ++...+-++|..-+++-++.------+=|| |==.|..
T Consensus 471 GAt------LAN~~~s~EAIsAY~rALqLqP~yVR~RyN----------------------------------lgIS~mN 510 (579)
T KOG1125|consen 471 GAT------LANGNRSEEAISAYNRALQLQPGYVRVRYN----------------------------------LGISCMN 510 (579)
T ss_pred hHH------hcCCcccHHHHHHHHHHHhcCCCeeeeehh----------------------------------hhhhhhh
Q ss_pred ccCHHHHHHHHHHHH---------hCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005580 365 KYAFQRGFEIYEKMC---------LDEVPMNEASLTAVGRMAMSMGDGDMAFDM 409 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~---------~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l 409 (690)
.|.+++|.+.|-+.. ..+..++...|.+|=.++.-.++.|-+.+.
T Consensus 511 lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 511 LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.11 E-value=2.4e+02 Score=29.47 Aligned_cols=114 Identities=12% Similarity=0.039 Sum_probs=74.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g 436 (690)
+...|...|+.+.|..+++.+...--.........=|..+.+.....+..++-...-.. | |...=-.+-..+.-.|
T Consensus 174 la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g 250 (304)
T COG3118 174 LAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVG 250 (304)
T ss_pred HHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 67889999999999999999876543334444444455666666666666666555544 5 4445555667788889
Q ss_pred ChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChH
Q 005580 437 DVDKACSVEEHMLEHG-VYPEEPELEALLRVSVEAGKGD 474 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~g-v~pd~~ty~~Li~~~~~~g~~~ 474 (690)
+.+.|.+.+-.+.++. ---|...=..||..+---|..|
T Consensus 251 ~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 251 RNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 9999988766655442 1224455566666665555444
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.07 E-value=1.2e+02 Score=31.24 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH-HHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLG----INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEE-PELEA 462 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g----~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~-gv~pd~-~ty~~ 462 (690)
.|+.-++.| +.|++.+|.+-|..-.+.. ..||..=| |-..+...|+.+.|-.+|..+.+. +-.|-. ..+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455555443 4566777777777666542 33333322 566777777777777777777653 112221 34444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 463 LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 463 Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
|-....+.|+.++|...|++..+. .|..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 555567778888888888888887 44433
No 241
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.89 E-value=1.6e+02 Score=27.63 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=46.9
Q ss_pred hccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHH
Q 005580 364 KKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (690)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~-~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~ 442 (690)
..++++++..+++.|.---. .|...+|-..| +...|++++|..+|++..+.+. ...|..-+.++|-.-.-|-.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~---~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG---APPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC---CchHHHHHHHHHHHhcCChHH
Confidence 46777888888888775211 12333444443 4567788888888888776642 224666777777665555555
Q ss_pred HHH
Q 005580 443 SVE 445 (690)
Q Consensus 443 ~l~ 445 (690)
+.+
T Consensus 97 r~~ 99 (153)
T TIGR02561 97 HVH 99 (153)
T ss_pred HHH
Confidence 544
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=56.78 E-value=1.7e+02 Score=32.92 Aligned_cols=58 Identities=17% Similarity=0.044 Sum_probs=37.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 428 ALSVFCNNGDVDKACSVEEHMLEHG-VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 428 lI~~~~k~g~~~~A~~l~~~M~~~g-v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
|-.++-+.|+.++|.+.|.+|.+.. ..-+..+...||.+|...+...++..++.+-.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3344445677777777777776432 222344566677777777777777777777643
No 243
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=55.45 E-value=84 Score=29.15 Aligned_cols=62 Identities=18% Similarity=0.086 Sum_probs=46.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHcch
Q 005580 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSK 505 (690)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~~ 505 (690)
.+.+.+.+.|++++.. =..+++.+...+..-.|.++++++.+...++++. .|+++..+-..|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4556667788876643 3457788888888899999999999986677776 688888775444
No 244
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=55.37 E-value=61 Score=27.90 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 005580 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (690)
Q Consensus 369 ~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (690)
-++.+-++.+....+.|+....++.+++|-+..++..|.++|+-.+.+ +..+...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 345555566666677788888888888888888888888888766633 2223445655553
No 245
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=55.23 E-value=28 Score=23.70 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005580 388 ASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (690)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~ 414 (690)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456666666666666666666666554
No 246
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.77 E-value=75 Score=37.09 Aligned_cols=100 Identities=11% Similarity=-0.038 Sum_probs=50.5
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHH
Q 005580 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~ 440 (690)
-+..-|+..+|.++-.+.+ .||--.|=-=+.+++..+++++-+++-+.++. ..-|-+.+.+|.+.|+.++
T Consensus 693 ~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHH
Confidence 3444555555555544443 25555555555566666666554444433321 3345555556666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005580 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (690)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l 479 (690)
|.+.+.... +.. -...+|.+.|++.+|.++
T Consensus 763 A~KYiprv~------~l~---ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 763 AKKYIPRVG------GLQ---EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HhhhhhccC------ChH---HHHHHHHHhccHHHHHHH
Confidence 665554421 111 345555555555555543
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=54.56 E-value=1.3e+02 Score=33.48 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=21.1
Q ss_pred hcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHh
Q 005580 203 KRGDVMGAIRLYDK-AQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTF 259 (690)
Q Consensus 203 k~g~~~~A~~lf~~-M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf 259 (690)
-.|+++++.++... -.-..++ ..-.+.++.-+- +.|..+.|+.+-
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~----------~~G~~e~AL~~~ 318 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLE----------KKGYPELALQFV 318 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHH----------HTT-HHHHHHHS
T ss_pred HcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHH----------HCCCHHHHHhhc
Confidence 46788887766641 1111122 344677777666 667777777775
No 248
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.94 E-value=2.6e+02 Score=28.63 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=45.5
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchH----HHHHHHHHhcCChHHH
Q 005580 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY----GPALSVFCNNGDVDKA 441 (690)
Q Consensus 366 g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty----~~lI~~~~k~g~~~~A 441 (690)
|+-.+|.+-+.+-.+. +.-|.-.|--|-+.|...|++++|.-.+++|.-. .|-...| .-+...-...-+++.|
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3334555555544443 4457777777777777777777777777777654 3433222 1122222223445556
Q ss_pred HHHHHHHHh
Q 005580 442 CSVEEHMLE 450 (690)
Q Consensus 442 ~~l~~~M~~ 450 (690)
.+.|..-.+
T Consensus 211 rkyy~~alk 219 (289)
T KOG3060|consen 211 RKYYERALK 219 (289)
T ss_pred HHHHHHHHH
Confidence 666666544
No 249
>PHA03100 ankyrin repeat protein; Provisional
Probab=53.54 E-value=1.5e+02 Score=33.07 Aligned_cols=245 Identities=11% Similarity=0.079 Sum_probs=113.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH-----HHhcccCCcccCCCCchhhHHhHhhhhccccc
Q 005580 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHY--NVLLYL-----CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (690)
Q Consensus 195 n~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~ty--n~Ll~~-----~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~ 267 (690)
.+.+...++.|+.+ +++.+.+.|..|+.... .+.+.. .+ ..|..+-+.-+++
T Consensus 36 ~t~L~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~----------~~~~~~iv~~Ll~------- 94 (480)
T PHA03100 36 VLPLYLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYN----------LTDVKEIVKLLLE------- 94 (480)
T ss_pred chhhhhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHH----------hhchHHHHHHHHH-------
Confidence 35566677888865 44555567877765332 234444 33 3344444433332
Q ss_pred cccccCCCC----ccchhhccccccccccccc-cCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc-cc--cCCCc
Q 005580 268 ELGDSRDMD----NNGQLDYGSSPMIDKLESN-SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-NL--ERGPD 339 (690)
Q Consensus 268 em~~~~gv~----d~~tyn~LI~~~~~~~~~~-~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-~~--a~~~~ 339 (690)
. |.. |...++.|..+ .. ..|..+ +++.+.+.|..++.......+.++..+ .. ...+.
T Consensus 95 ----~-ga~i~~~d~~g~tpL~~A------~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv 159 (480)
T PHA03100 95 ----Y-GANVNAPDNNGITPLLYA------ISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKIL 159 (480)
T ss_pred ----C-CCCCCCCCCCCCchhhHH------HhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHH
Confidence 1 322 33334444444 21 444444 444555677766554433112222222 11 23345
Q ss_pred hhhhhcCCCCChhhh--HHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHhcCChHHHHHH
Q 005580 340 DQSRKKDWSIDNQDA--DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS--------LTAVGRMAMSMGDGDMAFDM 409 (690)
Q Consensus 340 ~~m~~~g~~pd~~ty--n~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t--------yn~LI~~~~~~g~~~~A~~l 409 (690)
..+...|..++.... .+ .+...++.|..+ +++.+.+.|..|+... +.+.+...+..|. ...++
T Consensus 160 ~~Ll~~g~din~~d~~g~t-pL~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~i 232 (480)
T PHA03100 160 KLLIDKGVDINAKNRYGYT-PLHIAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEV 232 (480)
T ss_pred HHHHHCCCCcccccCCCCC-HHHHHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHH
Confidence 555666665544321 22 345555666543 4444445565554321 1444555555555 11234
Q ss_pred HHHHHHCCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHH
Q 005580 410 VKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLR 484 (690)
Q Consensus 410 ~~~M~~~g~~Pd~---~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty--~~Li~~~~~~g~~~~A~~ll~~M~ 484 (690)
++.+.+.|..++. .-+++|. ..+..|+. ++++.+.+.|..|+.... .+-+...++.+..+ +++.+.
T Consensus 233 v~~Ll~~g~din~~d~~g~TpL~-~A~~~~~~----~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~----iv~~Ll 303 (480)
T PHA03100 233 VNYLLSYGVPINIKDVYGFTPLH-YAVYNNNP----EFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKE----IFKLLL 303 (480)
T ss_pred HHHHHHcCCCCCCCCCCCCCHHH-HHHHcCCH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHH----HHHHHH
Confidence 4444556655443 2344443 34455664 344455556665554321 12233334445443 444444
Q ss_pred HcCCCCChh
Q 005580 485 TSVRKVSPS 493 (690)
Q Consensus 485 ~~~~g~~p~ 493 (690)
+. |++.+
T Consensus 304 ~~--g~~i~ 310 (480)
T PHA03100 304 NN--GPSIK 310 (480)
T ss_pred hc--CCCHH
Confidence 45 55444
No 250
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.40 E-value=77 Score=29.44 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=61.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCC---C--CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDE---V--PMNEASLTAVGRMAMSMGD-GDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g---~--~pd~~tyn~LI~~~~~~g~-~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (690)
++.-....+.+.....+++.+..-. + ..|..+|.+++.+.++..- ---+..+|..|++.+.+++..-|..+|.+
T Consensus 45 iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~ 124 (145)
T PF13762_consen 45 ILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKA 124 (145)
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6666677777887788877774311 0 2456679999999988776 45678999999998899999999999999
Q ss_pred HHhcCC
Q 005580 432 FCNNGD 437 (690)
Q Consensus 432 ~~k~g~ 437 (690)
+.+.-.
T Consensus 125 ~l~g~~ 130 (145)
T PF13762_consen 125 ALRGYF 130 (145)
T ss_pred HHcCCC
Confidence 877533
No 251
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=53.22 E-value=4.3e+02 Score=30.83 Aligned_cols=88 Identities=19% Similarity=0.128 Sum_probs=53.0
Q ss_pred HhcCChHHHHHHHHHHHHCC-CCC-----CcchHHHHHHHHH--hcCChHHHHHHHH--------HHHhCCCCCCHHHHH
Q 005580 398 MSMGDGDMAFDMVKRMKSLG-INP-----RLRSYGPALSVFC--NNGDVDKACSVEE--------HMLEHGVYPEEPELE 461 (690)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g-~~P-----d~~ty~~lI~~~~--k~g~~~~A~~l~~--------~M~~~gv~pd~~ty~ 461 (690)
+-.+++..|...+.+|.... -.| ....+...+.|.. ..|+++.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 34788999999999998652 112 2334444444443 3589999999997 555666666766665
Q ss_pred HHHHHH--HHcC--ChHH--HHHHHHHHHH
Q 005580 462 ALLRVS--VEAG--KGDR--VYYLLHKLRT 485 (690)
Q Consensus 462 ~Li~~~--~~~g--~~~~--A~~ll~~M~~ 485 (690)
.|=... ...+ ..++ +.++++.+..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 532222 2222 2222 6667666654
No 252
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.04 E-value=42 Score=24.67 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=31.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005580 199 DMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (690)
Q Consensus 199 ~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~ 235 (690)
-..-+.|-+.++..++++|.+.|+..+...|..++.-
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3346789999999999999999999999999988864
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=51.32 E-value=92 Score=34.76 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=36.5
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 005580 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (690)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (690)
.+. ++.-+-+.|..+.|+++-.+-.. =.+...+.|+++.|.++.++. ++...|..|=+...
T Consensus 298 ~~~-i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 298 GQS-IARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHH-HHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 344 77888888888888877544321 122233444444444443321 23334444444444
Q ss_pred hcCChHHHHHHHHH
Q 005580 434 NNGDVDKACSVEEH 447 (690)
Q Consensus 434 k~g~~~~A~~l~~~ 447 (690)
+.|+++.|.+.|..
T Consensus 359 ~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 359 RQGNIELAEECYQK 372 (443)
T ss_dssp HTTBHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHh
Confidence 55555555444444
No 254
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=50.93 E-value=32 Score=24.38 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (690)
+|..+-..|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555666666666666666665554
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.91 E-value=1.7e+02 Score=29.98 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCc-chHHHH
Q 005580 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP--MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRL-RSYGPA 428 (690)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~--pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~-~ty~~l 428 (690)
-|+. -++ +.+.|++.+|..-|....+.... -....+=-|-..+...|+.++|-.+|..+.+. +-.|.. .+.--|
T Consensus 144 ~Y~~-A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNA-ALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHH-HHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5777 434 45788899999999999986421 12234455888999999999999999998875 222322 344455
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 005580 429 LSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 429 I~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
-....+.|+.++|...|++..+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 55677889999999999998765
No 256
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=50.88 E-value=3.3e+02 Score=32.20 Aligned_cols=207 Identities=8% Similarity=-0.027 Sum_probs=115.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccchhhccccccccccccccCC
Q 005580 220 EGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSY 298 (690)
Q Consensus 220 ~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g 298 (690)
..+.-|...|-.|--++. .+|++..+.+.|. +.+. ++- -.-.|+.+=.. |.-.|
T Consensus 317 ~~~qnd~ai~d~Lt~al~----------~~g~f~~lae~fE-------~~~~--~~~~~~e~w~~~als------~saag 371 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALS----------RCGQFEVLAEQFE-------QALP--FSFGEHERWYQLALS------YSAAG 371 (799)
T ss_pred hhhcchHHHHHHHHHHHH----------HHHHHHHHHHHHH-------HHhH--hhhhhHHHHHHHHHH------HHHhc
Confidence 345567788888877777 7888888888885 2221 111 22336665555 66677
Q ss_pred ChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHH
Q 005580 299 RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (690)
Q Consensus 299 ~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M 378 (690)
.--.|..++++-....-.|+..+-- .+....|-+ +-+..+++.+.-.+.
T Consensus 372 ~~s~Av~ll~~~~~~~~~ps~~s~~--Lmasklc~e-----------------------------~l~~~eegldYA~ka 420 (799)
T KOG4162|consen 372 SDSKAVNLLRESLKKSEQPSDISVL--LMASKLCIE-----------------------------RLKLVEEGLDYAQKA 420 (799)
T ss_pred cchHHHHHHHhhcccccCCCcchHH--HHHHHHHHh-----------------------------chhhhhhHHHHHHHH
Confidence 7777777776543332224333332 222222211 112233333222222
Q ss_pred Hh------CCCCCCHHHHHHHHHHHHh-----------cCChHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChHH
Q 005580 379 CL------DEVPMNEASLTAVGRMAMS-----------MGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 379 ~~------~g~~pd~~tyn~LI~~~~~-----------~g~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~k~g~~~~ 440 (690)
.. ..+.|- .|-.+=-+|.. .....++.+.+++..+. +-.|++.-|-++- |+..++++.
T Consensus 421 i~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~s 496 (799)
T KOG4162|consen 421 ISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTS 496 (799)
T ss_pred HHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHH
Confidence 21 112221 22222112211 11233566777776654 4566666665554 445677888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
|+....+..+-+-.-+...|.-|.-.+...+++.+|+.+.+.-.+.
T Consensus 497 Al~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 497 ALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 8888888887766667888888888888888888888877665443
No 257
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=50.20 E-value=48 Score=27.15 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=24.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 005580 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (690)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~---ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd 456 (690)
.+...+..|+. ++++.+.+.|..|+.. -+++|.. .+..|+. ++++.+.+.|..||
T Consensus 29 ~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~----~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 29 ALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHY-AAENGNL----EIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHH----HHHHHHHHTTT-TT
T ss_pred HHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHH-HHHcCCH----HHHHHHHHcCCCCC
Confidence 44444555553 3344444455555543 2333333 3444443 34444445555544
No 258
>PRK15331 chaperone protein SicA; Provisional
Probab=49.15 E-value=1.9e+02 Score=27.51 Aligned_cols=87 Identities=11% Similarity=-0.053 Sum_probs=50.7
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHH
Q 005580 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (690)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A 441 (690)
+-..|++++|..+|.-+..-+.- |..=|..|-.++-..+++++|..++...-..+. -|.+.+=-+=.++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 34667778888888777654321 222234444444456777777777776554432 2223333334556667777777
Q ss_pred HHHHHHHHh
Q 005580 442 CSVEEHMLE 450 (690)
Q Consensus 442 ~~l~~~M~~ 450 (690)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 777776655
No 259
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=48.98 E-value=2.1e+02 Score=29.77 Aligned_cols=111 Identities=13% Similarity=0.069 Sum_probs=77.3
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCcchH
Q 005580 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMSM---GDGDMAFDMVKRMKSLGINPRLRSY 425 (690)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-~g~~pd~~tyn~LI~~~~~~---g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (690)
|...|-- |=..|...|+++.|..-|..-.+ .|- |...+..+-..+... ....++.++|+++.... .-|+.+-
T Consensus 155 d~egW~~-Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 155 DAEGWDL-LGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CchhHHH-HHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3344444 66889999999999999998876 344 444455555544433 23468999999998763 2355556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005580 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (690)
Q Consensus 426 ~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (690)
.-|-..+...|+..+|...|+.|.+. .|....+..+|..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 66667889999999999999999875 3444455555543
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=48.96 E-value=4.3e+02 Score=29.68 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=92.2
Q ss_pred CCCchhhHHhHhhhhccccccccccCCCC-c-----cchhhcccccccccccccc----CCChhhHHHHHHHHHHcCCCC
Q 005580 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD-N-----NGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLGQFS 317 (690)
Q Consensus 248 k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d-----~~tyn~LI~~~~~~~~~~~----~g~~~~A~~lf~eM~~~g~~P 317 (690)
-.|+-+.+++.+. +-.+..++. + ...|..++.. ++. ....+.|.+++.+|.++ -|
T Consensus 200 F~gdR~~GL~~L~-------~~~~~~~i~~~la~L~LL~y~~~~~~------~~~~~~~~~~~~~a~~lL~~~~~~--yP 264 (468)
T PF10300_consen 200 FSGDRELGLRLLW-------EASKSENIRSPLAALVLLWYHLVVPS------FLGIDGEDVPLEEAEELLEEMLKR--YP 264 (468)
T ss_pred cCCcHHHHHHHHH-------HHhccCCcchHHHHHHHHHHHHHHHH------HcCCcccCCCHHHHHHHHHHHHHh--CC
Confidence 4566667777664 222222444 2 1236666655 333 45678899999999876 57
Q ss_pred CccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC--C-CCCHHHHHHHH
Q 005580 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--V-PMNEASLTAVG 394 (690)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g--~-~pd~~tyn~LI 394 (690)
+..-|. +..| ..+...|++++|.+.|++..... . +.....|==+.
T Consensus 265 ~s~lfl---~~~g-----------------------------R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~ 312 (468)
T PF10300_consen 265 NSALFL---FFEG-----------------------------RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELA 312 (468)
T ss_pred CcHHHH---HHHH-----------------------------HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHH
Confidence 766663 1111 34567899999999999765321 1 11222233334
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHH-HHhcCCh-------HHHHHHHHHHH
Q 005580 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDV-------DKACSVEEHML 449 (690)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-~~k~g~~-------~~A~~l~~~M~ 449 (690)
-.+.-.+++++|.+.|..+.+..- -...+|.-+..+ +...|+. ++|.++|.+..
T Consensus 313 w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 313 WCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 457778999999999999987632 122233322222 2245777 88888888754
No 261
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=48.45 E-value=42 Score=22.77 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQR 219 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~ 219 (690)
.+++.|-..|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 6789999999999999999999999874
No 262
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.73 E-value=2.7e+02 Score=26.93 Aligned_cols=131 Identities=16% Similarity=0.064 Sum_probs=77.7
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
+++.+..++|+.-|.++.+.|.. .|. ++..|+ +-......|+...|..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g----~Yp--------------vLA~mr--------------~at~~a~kgdta~AV~ 115 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYG----SYP--------------VLARMR--------------AATLLAQKGDTAAAVA 115 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCC----cch--------------HHHHHH--------------HHHHHhhcccHHHHHH
Confidence 67788889999999998877632 232 111111 2234567889999999
Q ss_pred HHHHHHhCCCCCCHHH-HHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005580 374 IYEKMCLDEVPMNEAS-LTAVGR--MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (690)
Q Consensus 374 lf~~M~~~g~~pd~~t-yn~LI~--~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~ 450 (690)
-|++.-...-.|-..- ..-|=. .+..+|.+++....++-+...|-......--.|=-+-.+.|++.+|.+.|..+..
T Consensus 116 aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 116 AFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 9999887665564431 111212 2345677777666666555444333333333444455567777777777777665
Q ss_pred CCCCCC
Q 005580 451 HGVYPE 456 (690)
Q Consensus 451 ~gv~pd 456 (690)
.--.|-
T Consensus 196 Da~apr 201 (221)
T COG4649 196 DAQAPR 201 (221)
T ss_pred cccCcH
Confidence 444443
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=47.05 E-value=1.6e+02 Score=34.35 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--
Q 005580 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL-- 460 (690)
Q Consensus 383 ~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty-- 460 (690)
++-|.-..-.|.+++.+.|.-++|.+.+-. .+. | -..++.|...+++.+|.++-+... .|.+-|.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-p-----kaAv~tCv~LnQW~~avelaq~~~----l~qv~tlia 914 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-P-----KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIA 914 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-c-----HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHH
Confidence 444556667778888888888888777643 222 2 245666777777777776655432 1222111
Q ss_pred ------------HHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 461 ------------EALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 461 ------------~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
---|..+.++|+.-+|-+|+.+|.+.
T Consensus 915 k~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 915 KQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 11245567888888888999999653
No 264
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=46.52 E-value=1.5e+02 Score=29.02 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCcchHHHHHH-HHHhcCChH--HHHH
Q 005580 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALS-VFCNNGDVD--KACS 443 (690)
Q Consensus 369 ~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~-~~~k~g~~~--~A~~ 443 (690)
++++++-.++.. ++...-.....|++++|.+-++++.+. .++--...|.-+.. ++|.++.-+ +|..
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~ 90 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATL 90 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHH
Confidence 556666665543 444444556677788777777766543 12223445666665 677766543 4444
Q ss_pred HHHHHHhCCCCCCHH----HHHHHHHHH--------------HHcCChHHHHHHHHHHHHc
Q 005580 444 VEEHMLEHGVYPEEP----ELEALLRVS--------------VEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 444 l~~~M~~~gv~pd~~----ty~~Li~~~--------------~~~g~~~~A~~ll~~M~~~ 486 (690)
++.-... +..|... .+-..|.|. .+.|+++.|.++++-|..-
T Consensus 91 l~~~l~~-~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 91 LYSILKD-GRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHHHHhc-CCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4444433 3333332 122233333 4677888888888888654
No 265
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.10 E-value=2.8e+02 Score=28.64 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=32.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (690)
..++..|...|++.....- -|.+.-|.=.-++.-.|+..+|.+.++.|+.. .|...+-++++--+
T Consensus 265 ~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 265 QNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNL 329 (366)
T ss_pred ccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHH
Confidence 3445556666655554321 13333333333333356666777777666654 35555555554433
No 266
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=45.56 E-value=1.2e+02 Score=26.15 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
++.+-++.+....+.|+..+..+-+++|.+..++.-|.++|+-.+.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666666666666666655544
No 267
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=45.48 E-value=46 Score=23.55 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
++..+-..|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667778888889999999999988887
No 268
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.97 E-value=28 Score=31.74 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=26.5
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHH
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC 201 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~ 201 (690)
+.+.|...+|+.||..|.+.|. +|| .|+.||..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~------pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGN------PPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCC------CCc--cHHHHHHHh
Confidence 3377788899999999977654 454 699998765
No 269
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.68 E-value=5.1e+02 Score=29.30 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=75.1
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-------------------------HHHhcCChHHHHHHHHHHH
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-------------------------MAMSMGDGDMAFDMVKRMK 414 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~-------------------------~~~~~g~~~~A~~l~~~M~ 414 (690)
++|.+.++.+.|...|.+-...-..||..+=..-.. .+.+.|++..|.+.+.++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 366677788888888877665555555443222211 3556677777777777777
Q ss_pred HCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHcC
Q 005580 415 SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG-------KGDRVYYLLHKLRTSV 487 (690)
Q Consensus 415 ~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g-------~~~~A~~ll~~M~~~~ 487 (690)
+.. +-|.+.|+.---+|.+.|.+..|.+=-+.-.+. .|+ .+.+|.+.| ++++|.+.|.+-.+.
T Consensus 386 kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~------~~kgy~RKg~al~~mk~ydkAleay~eale~- 455 (539)
T KOG0548|consen 386 KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPN------FIKAYLRKGAALRAMKEYDKALEAYQEALEL- 455 (539)
T ss_pred hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--Cch------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 664 345677777777777777777776654443332 222 344444443 455566666555544
Q ss_pred CCCChhHHHHHHHH
Q 005580 488 RKVSPSTADVIAKW 501 (690)
Q Consensus 488 ~g~~p~t~~~I~~~ 501 (690)
.|+....+.++
T Consensus 456 ---dp~~~e~~~~~ 466 (539)
T KOG0548|consen 456 ---DPSNAEAIDGY 466 (539)
T ss_pred ---CchhHHHHHHH
Confidence 45544444444
No 270
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=44.16 E-value=1.5e+02 Score=29.09 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=47.4
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCcchHHHHHHHHHhcCChHH
Q 005580 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ty~~lI~~~~k~g~~~~ 440 (690)
+.|+ +.|.+.|-.+...+..-|....-.|..-|. ..+.++|..++....+. +-.+|...+.+|.+.+-+.|+.+.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 567777777777666555444444444444 55677777777665543 225566667777777777777766
Q ss_pred HH
Q 005580 441 AC 442 (690)
Q Consensus 441 A~ 442 (690)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 271
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.35 E-value=74 Score=23.35 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=15.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (690)
+.|-+.++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555554444
No 272
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.06 E-value=3.7e+02 Score=28.01 Aligned_cols=92 Identities=13% Similarity=-0.001 Sum_probs=56.6
Q ss_pred HHHHHH-hccCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 005580 358 RLSEDA-KKYAFQRGFEIYEKMCLDEV----PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (690)
Q Consensus 358 lI~~~~-k~g~~~~A~~lf~~M~~~g~----~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (690)
++...| ...-.++|.+.|+++...+. ..+...-.+++....+.|..++-..+++..... ++..--..++.++
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aL 211 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSAL 211 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhh
Confidence 455555 22346788888888887422 345556666777777777766655555554443 3566677788888
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 005580 433 CNNGDVDKACSVEEHMLEHG 452 (690)
Q Consensus 433 ~k~g~~~~A~~l~~~M~~~g 452 (690)
+...+.+...++++.....+
T Consensus 212 a~~~d~~~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 212 ACSPDPELLKRLLDLLLSND 231 (324)
T ss_dssp TT-S-HHHHHHHHHHHHCTS
T ss_pred hccCCHHHHHHHHHHHcCCc
Confidence 88888877777887777754
No 273
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.34 E-value=43 Score=34.92 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=38.9
Q ss_pred CCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005580 185 KKDRSEQF-QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL 233 (690)
Q Consensus 185 ~~~~p~~~-tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll 233 (690)
..+.||.. -||..|....+.||+++|+.|.+|.++.|+.--..||-.-+
T Consensus 250 ~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 250 EPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred CccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 34456544 47899999999999999999999999999876666665443
No 274
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=42.33 E-value=4.4e+02 Score=27.81 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCChHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAF 407 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~ 407 (690)
+|.-|+.++|..|+.+.++
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 4666666666666665443
No 275
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=41.74 E-value=3.6e+02 Score=33.05 Aligned_cols=126 Identities=10% Similarity=-0.018 Sum_probs=78.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHH--HHHhc
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS--VFCNN 435 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~--~~~k~ 435 (690)
|=.-|+...++.+|.+.|+..-+-. .-|...+..+.+-|+...++++|+.+.-.--+. -..-...+|-+-. .|.+.
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyLea 575 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYYLEA 575 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhccccccCc
Confidence 4455666667788888888766532 135667888888999999999988883221111 1111112222211 34456
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
++...|..-|+.-.+.. +-|...|..|..+|...|++..|.++|.+...-
T Consensus 576 ~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 576 HNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred cchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 67777777776665532 226677778888888888888888888776554
No 276
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=41.18 E-value=2.4e+02 Score=24.59 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+..+-++.+....+.|+..+..+.|++|.+..++.-|.++|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45556667777788899999999999999999999999999888877
No 277
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.68 E-value=3.4e+02 Score=29.61 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=52.5
Q ss_pred HHHHhccCHHHHHHHHHHHHhC-----CCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchH
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLD-----EVP---------MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~-----g~~---------pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (690)
+.|.|.|++..|..-|+..... +.. .-..+++.|.-+|.|.+++.+|++.-....... .+|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4678999999999888875431 111 112345555556666666666666555544331 1222211
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 005580 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (690)
Q Consensus 426 ~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (690)
--==.+|...|+++.|+..|+.+.+ +.|+...-+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~ 328 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK--LEPSNKAAR 328 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHH
Confidence 1111344445666666666666655 345443333
No 278
>PHA03100 ankyrin repeat protein; Provisional
Probab=40.41 E-value=1.1e+02 Score=34.21 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=81.0
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhh------ccccccCCCchhhhhcCCCCChhhh--HHHHHHHHH--
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLD------GRSNLERGPDDQSRKKDWSIDNQDA--DEIRLSEDA-- 363 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~------g~~~~a~~~~~~m~~~g~~pd~~ty--n~~lI~~~~-- 363 (690)
.++.|+.+ +++.+.+.|..|+.......+.++ +.......+...+...|..++.... .+ .+...+
T Consensus 42 A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~t-pL~~A~~~ 116 (480)
T PHA03100 42 AKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGIT-PLLYAISK 116 (480)
T ss_pred hhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCc-hhhHHHhc
Confidence 34555544 445555678877765443112222 2222222344455556655543321 22 233333
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchH--HHHHHHHHhcCChH
Q 005580 364 KKYAFQRGFEIYEKMCLDEVPMNEAS--LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFCNNGDVD 439 (690)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~t--yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~~k~g~~~ 439 (690)
+.|.. ++++.+.+.|..++... -.+.+..++..|. .-.++++.+.+.|..++.... .+.+...++.|+.+
T Consensus 117 ~~~~~----~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~ 190 (480)
T PHA03100 117 KSNSY----SIVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID 190 (480)
T ss_pred ccChH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH
Confidence 55654 44555556676664432 2355666677772 123445555667776654322 34556666777655
Q ss_pred HHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHHcCC
Q 005580 440 KACSVEEHMLEHGVYPEEPE--------LEALLRVSVEAGK 472 (690)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~t--------y~~Li~~~~~~g~ 472 (690)
-+ +.+.+.|..|+... +.+.+...+..|.
T Consensus 191 iv----~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~ 227 (480)
T PHA03100 191 VI----KFLLDNGADINAGDIETLLFTIFETPLHIAACYNE 227 (480)
T ss_pred HH----HHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc
Confidence 44 44445566555321 1444455566666
No 279
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=40.24 E-value=1.7e+02 Score=28.81 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=58.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCChH
Q 005580 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH---GVYPEEPELEALLRVSVEAGKGD 474 (690)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~---gv~pd~~ty~~Li~~~~~~g~~~ 474 (690)
.+.|+ ++|.+.|-.+...+..-+....-.|-..|. ..+.++|..++.+..+. +-.+|...+.+|...|-+.|+.+
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44444 478888888888876555555555555444 68899999998887653 44788999999999999999999
Q ss_pred HHH
Q 005580 475 RVY 477 (690)
Q Consensus 475 ~A~ 477 (690)
.|+
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 886
No 280
>PRK15331 chaperone protein SicA; Provisional
Probab=38.88 E-value=1.9e+02 Score=27.44 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=62.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 005580 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (690)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~-k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (690)
-+-..|++++|..+|.-+.-.+ |--.-|..=+.+|+ ..++.++|...|......+. -|...+-.+=.+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3456899999999999988754 33334544455554 46999999999987655432 23333444556778899999
Q ss_pred HHHHHHHHHHHc
Q 005580 475 RVYYLLHKLRTS 486 (690)
Q Consensus 475 ~A~~ll~~M~~~ 486 (690)
.|..-|..-..+
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999988875
No 281
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.32 E-value=2.7e+02 Score=31.99 Aligned_cols=82 Identities=11% Similarity=0.011 Sum_probs=65.1
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 005580 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (690)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (690)
..-|.. |=++..+.|++..|.+.|..-.. |..|+-.+...|+-+.-..+-..-++.|. .|...-
T Consensus 666 ~~Kw~~-Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~ 729 (794)
T KOG0276|consen 666 EVKWRQ-LGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFL 729 (794)
T ss_pred hHHHHH-HHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHH
Confidence 344556 77888899999999999987654 77889999999998877777777777775 466667
Q ss_pred HHHhcCChHHHHHHHHHH
Q 005580 431 VFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 431 ~~~k~g~~~~A~~l~~~M 448 (690)
+|...|+++++.+++.+-
T Consensus 730 ~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 730 AYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHcCCHHHHHHHHHhc
Confidence 788999999999887653
No 282
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=35.11 E-value=2e+02 Score=25.07 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=20.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.|+.++|..+.+.+ +.||.+.|-+|-. .+.|..+++..-+.+|..+
T Consensus 51 NrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 51 NRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred ccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 344444444444443 3445544444432 2444444444444444443
No 283
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=34.65 E-value=2.6e+02 Score=28.07 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=21.9
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005580 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDM 409 (690)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l 409 (690)
|+.+.+.+.+.+|+.+..+=.+.. +-|.-+=..|+..||-.|++++|..-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Q 57 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQ 57 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHH
Confidence 344444445555554444433321 12333334444455555555554433
No 284
>PHA02875 ankyrin repeat protein; Provisional
Probab=33.73 E-value=1.8e+02 Score=31.67 Aligned_cols=165 Identities=12% Similarity=0.011 Sum_probs=77.2
Q ss_pred ccCCChhhHHHHHHHHHHcCCCCCccccchh-hhhhccccccCCCchhhhhcCCCCChh--hhHHHHHHHHHhccCHHHH
Q 005580 295 NSSYRFDDLDSTFNEKENLGQFSNGHMKLNS-QLLDGRSNLERGPDDQSRKKDWSIDNQ--DADEIRLSEDAKKYAFQRG 371 (690)
Q Consensus 295 ~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~-~li~g~~~~a~~~~~~m~~~g~~pd~~--tyn~~lI~~~~k~g~~~~A 371 (690)
+..|..+-+ +.+.+.|..|+....... .|.-+.......+...+...|..|+.. ...+ .+...++.|+.+.+
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~~~v 84 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVKAV 84 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCHHHH
Confidence 445555444 444567888876553311 222221111222444455556555543 1122 34555677776655
Q ss_pred HHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchH--HHHHHHHHhcCChHHHHHHHH
Q 005580 372 FEIYEKMCLDEVPMNEAS---LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY--GPALSVFCNNGDVDKACSVEE 446 (690)
Q Consensus 372 ~~lf~~M~~~g~~pd~~t---yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--~~lI~~~~k~g~~~~A~~l~~ 446 (690)
..+++ .|...+... -.+.+...+..|+.+ +++.+.+.|..|+.... .+.+...+..|+.+-+..+
T Consensus 85 ~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L-- 154 (413)
T PHA02875 85 EELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL-- 154 (413)
T ss_pred HHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH--
Confidence 44443 333222111 134455556666653 44445556766655332 2345555667776544443
Q ss_pred HHHhCCCCCCHHH--HHHHHHHHHHcCChHHH
Q 005580 447 HMLEHGVYPEEPE--LEALLRVSVEAGKGDRV 476 (690)
Q Consensus 447 ~M~~~gv~pd~~t--y~~Li~~~~~~g~~~~A 476 (690)
.+.|..++... -.+.+...+..|..+-+
T Consensus 155 --l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv 184 (413)
T PHA02875 155 --IDHKACLDIEDCCGCTPLIIAMAKGDIAIC 184 (413)
T ss_pred --HhcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 34555443321 12334444556665433
No 285
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=33.70 E-value=6e+02 Score=28.51 Aligned_cols=123 Identities=13% Similarity=0.075 Sum_probs=84.2
Q ss_pred HHHHhccCHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh
Q 005580 360 SEDAKKYAFQRG-FEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (690)
Q Consensus 360 ~~~~k~g~~~~A-~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~ 438 (690)
.--...|++-.| .++|+-++..--.|+.+-.-+.| +...|+++.|.+.+...... +.....+--+++....+.|+.
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 333445665544 56777777766668877666655 46689999999988776544 445667788899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
++|+.+-+.|....++-..+ ...--..--..|-+|+++-.++++-.-
T Consensus 374 ~~a~s~a~~~l~~eie~~ei-~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEEV-LTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHhccccCChhh-eeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 99999999998887763222 221112223456778888777776543
No 286
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=33.57 E-value=2.6e+02 Score=24.42 Aligned_cols=79 Identities=18% Similarity=0.109 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 005580 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEE 446 (690)
Q Consensus 367 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~ 446 (690)
..++|.-|-+-+...+-. .++.--+=+..+...|++++|..+.+.+ +.||+..|-+|-. .|.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 346777777766655422 3333333344678899999999998876 6899999987754 47788888888888
Q ss_pred HHHhCC
Q 005580 447 HMLEHG 452 (690)
Q Consensus 447 ~M~~~g 452 (690)
+|..+|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 887776
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=33.22 E-value=4.1e+02 Score=24.88 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=61.0
Q ss_pred hcCChHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 005580 399 SMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (690)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (690)
..++++++..++..|.-. --.|...+|-..| +...|++++|..+|++..+.+..+ .|..-+.++|-...-|-..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP---PYGKALLALCLNAKGDAEW 96 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc---hHHHHHHHHHHHhcCChHH
Confidence 378999999999998754 2234556676666 457899999999999998776332 4454555555433333222
Q ss_pred H-HHHHHHHcCCCCChhHHHHHHHHH
Q 005580 478 Y-LLHKLRTSVRKVSPSTADVIAKWF 502 (690)
Q Consensus 478 ~-ll~~M~~~~~g~~p~t~~~I~~~~ 502 (690)
+ .-.++... +..|++..+++.+.
T Consensus 97 r~~A~~~le~--~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 97 HVHADEVLAR--DADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHh--CCCHhHHHHHHHHh
Confidence 2 22333455 66666665555553
No 288
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=33.21 E-value=6.8e+02 Score=27.41 Aligned_cols=128 Identities=15% Similarity=0.058 Sum_probs=75.4
Q ss_pred hccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCcc--hHHHHHHHHHhc---C
Q 005580 364 KKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLR--SYGPALSVFCNN---G 436 (690)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~--ty~~lI~~~~k~---g 436 (690)
+.|.-+-|...-++--.. .|. ...+.+++...|..|+|+.|+++++.-+... +.+|+. .-..|+.+-+.. -
T Consensus 166 r~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 166 RLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred hcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 556666666655554432 232 3567888888888899998888888766543 445542 333444432211 2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 005580 437 DVDKACSVEEHMLEHGVYPEEPELEA-LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~-Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (690)
+...|...-. ....+.||.+--.. --.+|.+.|++.++-.+++.+-+. .+.|+.+..
T Consensus 244 dp~~Ar~~A~--~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~l 301 (531)
T COG3898 244 DPASARDDAL--EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALL 301 (531)
T ss_pred ChHHHHHHHH--HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHH
Confidence 2223333222 23345555443222 235668888888888888888888 888885544
No 289
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.80 E-value=2.3e+02 Score=24.80 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 005580 425 YGPALSVFCNNGDVDKACSVEEHMLE 450 (690)
Q Consensus 425 y~~lI~~~~k~g~~~~A~~l~~~M~~ 450 (690)
|..|+.-|-..|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666665554
No 290
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.09 E-value=1.5e+02 Score=28.65 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
|+..+|..++..+...|+.++|.+++.++..-
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444444444444444444444444444443
No 291
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=31.89 E-value=76 Score=22.95 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=11.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKS 415 (690)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~ 415 (690)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3445555555555555555443
No 292
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.05 E-value=4e+02 Score=30.16 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=78.4
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCCh
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDV 438 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~~ 438 (690)
++.+..|+++.|...|-+-..-.. +|.+.|+.=..+|++.|++++|++=-.+-. .+.|+. --|+-.=.++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~--~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTR--RLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHH--hcCCchhhHHHHhHHHHHhcccH
Confidence 345688999999999998876543 489999999999999999999877554433 456776 4677777777778999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005580 439 DKACSVEEHMLEHGVYPEEPELEALLRVS 467 (690)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (690)
++|..-|.+=.+.. .-|...++-|.+++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 99999998876642 23455566666655
No 293
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.69 E-value=83 Score=32.87 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=31.0
Q ss_pred CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchH
Q 005580 383 VPMNEAS-LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (690)
Q Consensus 383 ~~pd~~t-yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (690)
+.||..+ ||..|+...+.||+++|+.|++|-++.|+.--..||
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4455544 578888888888888888888888888875433333
No 294
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=30.67 E-value=77 Score=19.66 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=8.4
Q ss_pred HHHHHHhcCChHHHHHHH
Q 005580 393 VGRMAMSMGDGDMAFDMV 410 (690)
Q Consensus 393 LI~~~~~~g~~~~A~~l~ 410 (690)
+-..+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334444445555544444
No 295
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=30.64 E-value=4.3e+02 Score=24.32 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=25.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 005580 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (690)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~ 449 (690)
++..|+++.|++.|.+-... +.-+...||.--.++--.|+.++|+.=+++..
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 34455555555555544332 22234445555555555555555555444443
No 296
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=30.56 E-value=4.8e+02 Score=27.89 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=51.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCcch-HH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLD---EVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKS-----LGINPRLRS-YG 426 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~---g~~pd~~tyn--~LI~~~~~~g~~~~A~~l~~~M~~-----~g~~Pd~~t-y~ 426 (690)
++...-+.++.++|+++++++.+. --.||.+.|. .+.+.+-..|+..++.+++.+.++ .|+.|++.+ |.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 444444556788888888888753 2346777664 344455567888888888887776 577775543 44
Q ss_pred HHHHHHH-hcCChHHH
Q 005580 427 PALSVFC-NNGDVDKA 441 (690)
Q Consensus 427 ~lI~~~~-k~g~~~~A 441 (690)
.+=+-|- +.|++...
T Consensus 161 ~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 4443333 34555443
No 297
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=29.86 E-value=5.4e+02 Score=25.23 Aligned_cols=107 Identities=10% Similarity=-0.055 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHH
Q 005580 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH---GVYPEEPE 459 (690)
Q Consensus 383 ~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~---gv~pd~~t 459 (690)
+.|++.---.|-.++...|+..+|...|.+-..--+.-|....-.+-.+....++...|...++.+.+. +-.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--
Confidence 457777777888999999999999999998765445556677777778888889999999999998775 344553
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
--.+-+.|...|+..+|+.-|+...+. .+.|.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ 194 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQ 194 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHH
Confidence 334567888999999999999999998 66666
No 298
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=29.84 E-value=3.3e+02 Score=22.93 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005580 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (690)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (690)
++|+--...|+..|..+|..+++.+.-+=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 788888888888888888887765544333344444444443
No 299
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=29.72 E-value=7.6e+02 Score=26.88 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005580 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (690)
Q Consensus 187 ~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~ 220 (690)
..|| +..|.|++ |-...+++..+++++.|...
T Consensus 139 ls~d-iv~~lllS-yRdiqdydamI~Lve~l~~~ 170 (374)
T PF13281_consen 139 LSPD-IVINLLLS-YRDIQDYDAMIKLVETLEAL 170 (374)
T ss_pred cChh-HHHHHHHH-hhhhhhHHHHHHHHHHhhcc
Confidence 4556 44455554 88888999999999999864
No 300
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.04 E-value=2.2e+02 Score=33.10 Aligned_cols=91 Identities=10% Similarity=0.031 Sum_probs=65.1
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChH------HHHHHHHHHHHCCCCCCcchHHHH
Q 005580 357 IRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGD------MAFDMVKRMKSLGINPRLRSYGPA 428 (690)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~--g~~pd~~tyn~LI~~~~~~g~~~------~A~~l~~~M~~~g~~Pd~~ty~~l 428 (690)
.|..+|..+|++.++..+++.+... |-+.=.-.||.-|+.+.+.|.++ .|.++++.- -+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 3889999999999999999998753 44444556888899999999765 344444433 356688999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 005580 429 LSVFCNNGDVDKACSVEEHMLE 450 (690)
Q Consensus 429 I~~~~k~g~~~~A~~l~~~M~~ 450 (690)
+.+-..--.-....-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8887765555555555555543
No 301
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.86 E-value=7e+02 Score=27.12 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=42.0
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh--cCChHHHHHHHHHHHHC
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA--SLTAVGRMAMS--MGDGDMAFDMVKRMKSL 416 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~--tyn~LI~~~~~--~g~~~~A~~l~~~M~~~ 416 (690)
..+.+.+++..|.++|+++..+ +.++.. .|..|..+|-. .-+.++|.+.|+.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455889999999999999988 666555 45566666665 55677899999876655
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=28.74 E-value=1.5e+02 Score=19.15 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~ 415 (690)
+|..+-..|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555556666666666555443
No 303
>PRK11906 transcriptional regulator; Provisional
Probab=28.45 E-value=5.6e+02 Score=28.64 Aligned_cols=112 Identities=13% Similarity=0.117 Sum_probs=71.5
Q ss_pred cCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc---chHHHHHHHHHhcCChHHHH
Q 005580 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKAC 442 (690)
Q Consensus 366 g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---~ty~~lI~~~~k~g~~~~A~ 442 (690)
....+|.++-+.-.+.+- -|......+-.++.-.|+.+.|..+|++-... .||. ..|..++. +-+|+.++|.
T Consensus 318 ~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~--~~~G~~~~a~ 392 (458)
T PRK11906 318 LAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVH--FHNEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHH--HHcCCHHHHH
Confidence 345667777776666542 36666666666667788899999999986654 4554 44555554 4479999999
Q ss_pred HHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005580 443 SVEEHMLE-HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (690)
Q Consensus 443 ~l~~~M~~-~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (690)
+.+++-.+ .=...-.......|+.|+..+ +++|..++.+-
T Consensus 393 ~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 393 ICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 99888433 222223344455566777655 66777766543
No 304
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=28.00 E-value=2.3e+02 Score=27.33 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005580 391 TAVGRMAMSMGDGDMAFDMVKRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (690)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~ 450 (690)
...+.......+.+......+.+++. ...|+...|..++..+...|+.++|.++.+++..
T Consensus 112 ~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 112 AALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444677777666666665544 5679999999999999999999999999999865
No 305
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=27.80 E-value=2.7e+02 Score=27.93 Aligned_cols=79 Identities=11% Similarity=0.038 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE--HGVYPEEPELEALLRV 466 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~--~gv~pd~~ty~~Li~~ 466 (690)
|.+..|+.+.+.+.+.+|+.+.++-.+.. .-|.-+-..++.-||-.|+.++|..-++-.-. -...+-..+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45667788889999999999998876652 34566677799999999999999866654432 2345677889998887
Q ss_pred HH
Q 005580 467 SV 468 (690)
Q Consensus 467 ~~ 468 (690)
-.
T Consensus 82 ea 83 (273)
T COG4455 82 EA 83 (273)
T ss_pred HH
Confidence 54
No 306
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.73 E-value=9.3e+02 Score=27.23 Aligned_cols=109 Identities=8% Similarity=0.039 Sum_probs=67.2
Q ss_pred HHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 370 RGFEIYEKM-CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 370 ~A~~lf~~M-~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M 448 (690)
+..+.+... ...|+..+......++. ...|++..|+.++++....+ ....|+..+...+
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l---------------- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI---------------- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh----------------
Confidence 333444433 34677777776666554 34699999999998865432 2234555543332
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHHcc
Q 005580 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA-DVIAKWFNS 504 (690)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~-~~I~~~~~~ 504 (690)
|+ ++...+..+++++...+....|+.++.+|.+. |..|..+ .-+..+++.
T Consensus 244 ---g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~--G~d~~~~~~~l~~~~r~ 294 (484)
T PRK14956 244 ---GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQE--GQDIYKFLWDSIEFTHT 294 (484)
T ss_pred ---CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHH
Confidence 32 26666777777766655567888899999888 8888733 224444443
No 307
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.66 E-value=6.5e+02 Score=26.16 Aligned_cols=132 Identities=15% Similarity=0.172 Sum_probs=78.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
++.-+-+...+.+..+.+..|+ ....-...|+.+...|++..|++++.+..+. .. ...-|+++=+- ..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hHH
Confidence 6677777777777777777776 3455667788888999999999999987754 10 11112111111 122
Q ss_pred hHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 005580 438 VDKACSVEEHMLEH-----GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWF 502 (690)
Q Consensus 438 ~~~A~~l~~~M~~~-----gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~ 502 (690)
+++-....+++.+. -..-|...|..++.+|.--|+...+.+-+..--.. .+...+..++.++.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~--~i~~~~~~vv~~~~ 240 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTS--AIHSTTFSVVRSYV 240 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 33334444433332 12468899999999999988776654433322222 22333555555553
No 308
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=27.66 E-value=6.6e+02 Score=27.43 Aligned_cols=105 Identities=14% Similarity=0.019 Sum_probs=70.5
Q ss_pred HHHhcCChHHHHHHHHHHHHC-----C---------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 005580 396 MAMSMGDGDMAFDMVKRMKSL-----G---------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (690)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~-----g---------~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (690)
.|.+.|++..|..-++...+. + ...-..+++.|.-+|.|.++..+|.+.-+...+.+ .+|+-..=
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 567788888887776653321 1 12344678888889999999999998888776643 23333322
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHHc
Q 005580 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFN 503 (690)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~ 503 (690)
-==.+|...|+++.|...|+++.+. .|..-.... |..+..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 2335667789999999999999988 444434444 555544
No 309
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.48 E-value=3.4e+02 Score=23.73 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005580 390 LTAVGRMAMSMGDGDMAFDMVKRMKS 415 (690)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~ 415 (690)
|..|+.-|-..|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 99999999999999999999999887
No 310
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=27.20 E-value=8.4e+02 Score=26.55 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=80.4
Q ss_pred HHHh---ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCCCcchHHHH
Q 005580 361 EDAK---KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS---------MGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (690)
Q Consensus 361 ~~~k---~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~---------~g~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (690)
++-+ .|+-++|++++..+....-.++.-||..+-+.|-. ....++|...+.+--+ +.||.++=-.+
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~ 265 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINA 265 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHH
Confidence 4445 89999999999997776667788888887776543 2235677777764332 34655442222
Q ss_pred HHHHHhcCC-hH---HHHHHH---H-HHHhCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 429 LSVFCNNGD-VD---KACSVE---E-HMLEHG---VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 429 I~~~~k~g~-~~---~A~~l~---~-~M~~~g---v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..-+.-.|. .+ +..++- . ...++| -..|-..+.+++.++.-.|+.++|.+..++|...
T Consensus 266 AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 266 ATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 222223333 21 222222 2 222334 3467788899999999999999999999999976
No 311
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=26.83 E-value=4.1e+02 Score=22.90 Aligned_cols=98 Identities=9% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (690)
....+|.-|...+++++|.+-+.++......++++..-.....=-+...-+....++..+.+.+.......-..+-+.+-
T Consensus 4 ~i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~ 83 (113)
T smart00544 4 KIFLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLE 83 (113)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh
Q ss_pred HcCChHH----HHHHHHHHHHc
Q 005580 469 EAGKGDR----VYYLLHKLRTS 486 (690)
Q Consensus 469 ~~g~~~~----A~~ll~~M~~~ 486 (690)
...+.+. |...+.++...
T Consensus 84 ~l~dl~~D~P~a~~~la~~~a~ 105 (113)
T smart00544 84 DIEDLELDIPNAWRNLAEFVAR 105 (113)
T ss_pred hChhhhcccccHHHHHHHHHHH
No 312
>PHA02989 ankyrin repeat protein; Provisional
Probab=26.82 E-value=1.6e+02 Score=33.13 Aligned_cols=143 Identities=16% Similarity=0.059 Sum_probs=73.7
Q ss_pred HHHHHHHcCCCCCccccc-hhhhhhccccc--cCCCchhhhhcCCCCChhhhHHHHHHHHHhccCH--HHHHHHHHHHHh
Q 005580 306 TFNEKENLGQFSNGHMKL-NSQLLDGRSNL--ERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF--QRGFEIYEKMCL 380 (690)
Q Consensus 306 lf~eM~~~g~~Pd~~ty~-~~~li~g~~~~--a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~--~~A~~lf~~M~~ 380 (690)
+.+.+.+.|..+|.. +. ...+....+.. -..+..-+...|..+|...+...-+...++.+.. ....++.+.+.+
T Consensus 18 ~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~ 96 (494)
T PHA02989 18 ALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIVKLLLK 96 (494)
T ss_pred HHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHHHHHHH
Confidence 344455778888876 32 11222222111 1235556667777766543211133344444432 345677888888
Q ss_pred CCCCCCHHH---HHHHHHHHHh--cCChHHHHHHHHHHHHCCCCC-Cc---chHHHHHHHHHh-cCChHHHHHHHHHHHh
Q 005580 381 DEVPMNEAS---LTAVGRMAMS--MGDGDMAFDMVKRMKSLGINP-RL---RSYGPALSVFCN-NGDVDKACSVEEHMLE 450 (690)
Q Consensus 381 ~g~~pd~~t---yn~LI~~~~~--~g~~~~A~~l~~~M~~~g~~P-d~---~ty~~lI~~~~k-~g~~~~A~~l~~~M~~ 450 (690)
.|..+|... .+.|..+... .|. .++++.+.+.|..| +. .-+++|.-++.. .++. ++.+.+.+
T Consensus 97 ~Gadin~~d~~g~tpL~~a~~~~~~~~----~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~----~iv~~Ll~ 168 (494)
T PHA02989 97 FGADINLKTFNGVSPIVCFIYNSNINN----CDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKK----DVIKILLS 168 (494)
T ss_pred CCCCCCCCCCCCCcHHHHHHHhcccCc----HHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCH----HHHHHHHH
Confidence 887766543 3344333221 233 35666667788777 33 344555444332 2443 45566667
Q ss_pred CCCCCCH
Q 005580 451 HGVYPEE 457 (690)
Q Consensus 451 ~gv~pd~ 457 (690)
.|..|+.
T Consensus 169 ~Gadi~~ 175 (494)
T PHA02989 169 FGVNLFE 175 (494)
T ss_pred cCCCccc
Confidence 7877655
No 313
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.81 E-value=6.1e+02 Score=27.16 Aligned_cols=120 Identities=13% Similarity=0.025 Sum_probs=82.9
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHH--H--HHHHHHhcCChH
Q 005580 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG--P--ALSVFCNNGDVD 439 (690)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~--~--lI~~~~k~g~~~ 439 (690)
-.|+..+|...++++.+. .+.|...++-.=++|.-.|+.+.-...++++... -.||.-.|+ . .--++-.+|-.+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456777788888887764 5668888888888888888888888888877654 235553332 2 223344678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+|.+.-++-.+-+ .-|...-.++-..+--.|+..++.+++.+-.+.
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~ 238 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD 238 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc
Confidence 8888777765433 235666667777777888888888877665544
No 314
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=26.76 E-value=1.2e+02 Score=21.85 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=13.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 005580 429 LSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 429 I~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
-.+|...|+.+.|.+++++....
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHc
Confidence 34555666666666666665543
No 315
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=25.28 E-value=5.2e+02 Score=23.50 Aligned_cols=128 Identities=19% Similarity=0.141 Sum_probs=81.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHH-HHHhc
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-VFCNN 435 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~-~~~k~ 435 (690)
....+...+.+..+...+...... ........+..+...+...+....+.+.+.........+ ......... .+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 143 (291)
T COG0457 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHc
Confidence 556667777777777777776653 334455666677777777777888888888776653333 122222222 67788
Q ss_pred CChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 436 GDVDKACSVEEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 436 g~~~~A~~l~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
|+.+.|...+.+.....- ......+......+...++.+++...+.+....
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 888888888888744211 123344444444466777888888888887776
No 316
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=25.25 E-value=1.1e+03 Score=28.75 Aligned_cols=82 Identities=17% Similarity=0.226 Sum_probs=48.0
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHH---------------HHHHH
Q 005580 369 QRGFEIYEKM-CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP---------------ALSVF 432 (690)
Q Consensus 369 ~~A~~lf~~M-~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~---------------lI~~~ 432 (690)
++..+.+.++ .+.|+..+...+..+++.. .|++..++.+++++... ...+.+|+.. +|+++
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~-~~~~~IT~e~V~allg~~~~~~I~~lidAL 258 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAG-AGPEGVTYERAVALLGVTDSALIDEAVDAL 258 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh-cCCCCCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3344444443 3457777777766665544 47888888888877632 2234444442 33333
Q ss_pred HhcCChHHHHHHHHHHHhCCCC
Q 005580 433 CNNGDVDKACSVEEHMLEHGVY 454 (690)
Q Consensus 433 ~k~g~~~~A~~l~~~M~~~gv~ 454 (690)
. .++...++.+++++.+.|..
T Consensus 259 ~-~~D~a~al~~l~~Li~~G~d 279 (824)
T PRK07764 259 A-AGDGAALFGTVDRVIEAGHD 279 (824)
T ss_pred H-cCCHHHHHHHHHHHHHcCCC
Confidence 3 46666777777777766654
No 317
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=24.58 E-value=73 Score=29.17 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=10.1
Q ss_pred CChHHHHHHHHHHHhCCCCCC
Q 005580 436 GDVDKACSVEEHMLEHGVYPE 456 (690)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd 456 (690)
|.-..|..+|..|.+.|-.||
T Consensus 109 gsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc
Confidence 333444555555555554444
No 318
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=23.86 E-value=78 Score=21.16 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHH
Q 005580 386 NEASLTAVGRMAMSMGDGDMAF 407 (690)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~ 407 (690)
|...|+.|-..|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5667777777777777777775
No 319
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=23.24 E-value=1.2e+02 Score=29.65 Aligned_cols=27 Identities=7% Similarity=0.210 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHhhCCCCCccEEEeccccc
Q 005580 624 PARVNAVVNGIRQKFPSKKWPLIVLHNRRI 653 (690)
Q Consensus 624 ~~~l~~vv~~l~~~~~~~~~~lvvL~~~~~ 653 (690)
-..|+.++..+.+ -.-+.+++|..+-+
T Consensus 113 ~~Al~lil~~lk~---~~~k~vi~L~d~~v 139 (211)
T COG2454 113 DKALDLLLEFLKD---VEPKSVIFLFDAPV 139 (211)
T ss_pred HHHHHHHHHHHHH---cCCceEEEEeCCCC
Confidence 4667777777777 33467888887765
No 320
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=23.19 E-value=1e+02 Score=19.50 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=15.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHc
Q 005580 465 RVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.++.+.|+.++|.+.|+++.+.
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHH
Confidence 3455667777777777777665
No 321
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.86 E-value=8.3e+02 Score=27.82 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=52.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CC----------CCcchHHHHHHHHHhcCChHHHHHH
Q 005580 378 MCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG---IN----------PRLRSYGPALSVFCNNGDVDKACSV 444 (690)
Q Consensus 378 M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g---~~----------Pd~~ty~~lI~~~~k~g~~~~A~~l 444 (690)
+.+.|+..+......+++.. .|++..|..++++....| +. ++....-.|++++ ..|+.+.++.+
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~~~d~~~~l~~ 267 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-AAKAGDRLLGC 267 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-HcCCHHHHHHH
Confidence 44567777776666665553 588888888887766543 11 2222333445544 34889999999
Q ss_pred HHHHHhCCCCCCHHH
Q 005580 445 EEHMLEHGVYPEEPE 459 (690)
Q Consensus 445 ~~~M~~~gv~pd~~t 459 (690)
+++|...|..|....
T Consensus 268 ~~~l~~~g~~~~~il 282 (509)
T PRK14958 268 VTRLVEQGVDFSNAL 282 (509)
T ss_pred HHHHHHcCCCHHHHH
Confidence 999999998876443
No 322
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.70 E-value=8.5e+02 Score=25.02 Aligned_cols=21 Identities=10% Similarity=-0.220 Sum_probs=11.9
Q ss_pred HHHHHHhccCHHHHHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKM 378 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M 378 (690)
-+.+|..+|.++-|-.-+++-
T Consensus 97 As~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHH
Confidence 455666666665555555443
No 323
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.64 E-value=97 Score=25.61 Aligned_cols=27 Identities=7% Similarity=-0.091 Sum_probs=22.2
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhCC
Q 005580 356 EIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (690)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (690)
-.+++.+.++.-.++|+++++-|.++|
T Consensus 35 PtV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 35 PTVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred chHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 337777888888899999999998887
No 324
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=22.36 E-value=7.1e+02 Score=29.34 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=33.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005580 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (690)
Q Consensus 421 d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (690)
|..-.-.+-+++.+.|..++|.+.|-+- + .| .+-++.|....++.+|.+|-++.
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455566777778777777666442 1 12 23456677777777777776554
No 325
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.28 E-value=1.2e+02 Score=23.58 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 005580 391 TAVGRMAMSMGDGDMAFDMVKRMKS 415 (690)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~ 415 (690)
--+|.||...|++++|.+.++++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456777777777777777766653
No 326
>PHA02989 ankyrin repeat protein; Provisional
Probab=22.24 E-value=1.1e+03 Score=26.30 Aligned_cols=118 Identities=9% Similarity=-0.057 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHcCCCCCccccchh-hhhhcccc---ccCCCchhhhhcCCCC-Chhh--hHHHHHHHHHhc--cCHHHHH
Q 005580 302 DLDSTFNEKENLGQFSNGHMKLNS-QLLDGRSN---LERGPDDQSRKKDWSI-DNQD--ADEIRLSEDAKK--YAFQRGF 372 (690)
Q Consensus 302 ~A~~lf~eM~~~g~~Pd~~ty~~~-~li~g~~~---~a~~~~~~m~~~g~~p-d~~t--yn~~lI~~~~k~--g~~~~A~ 372 (690)
...++.+.+.+.|..+|....... .|..+... ....+..-+.++|..+ +... -.+ .+..++.. +. .
T Consensus 86 ~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t-pLh~a~~~~~~~----~ 160 (494)
T PHA02989 86 KIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN-LLHMYLESFSVK----K 160 (494)
T ss_pred hHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC-HHHHHHHhccCC----H
Confidence 345677778888987776654311 22211110 1123455566777777 3321 112 33333332 33 3
Q ss_pred HHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcch
Q 005580 373 EIYEKMCLDEVPMNEA---SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (690)
Q Consensus 373 ~lf~~M~~~g~~pd~~---tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 424 (690)
++.+.+.+.|..|+.. .-.+-+..+++.+--..-.++++.+.+.|..++...
T Consensus 161 ~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~ 215 (494)
T PHA02989 161 DVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN 215 (494)
T ss_pred HHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccC
Confidence 4556666677766542 112223333333211122455566666776665544
No 327
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=21.93 E-value=3.9e+02 Score=24.34 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHH
Q 005580 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (690)
Q Consensus 370 ~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (690)
+..+-++.+..-.+.|+......-+++|-+..|+..|.++|+-++.+ +.+-...|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 44555666666778888888888899999999999999998887755 323333454444
No 328
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=21.59 E-value=8.9e+02 Score=24.84 Aligned_cols=98 Identities=7% Similarity=0.026 Sum_probs=62.7
Q ss_pred HHHHHHhccCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHH--
Q 005580 358 RLSEDAKKYAF---QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF-- 432 (690)
Q Consensus 358 lI~~~~k~g~~---~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~-- 432 (690)
|+.+|...+.. ++|.++++.+...... ...+|-.=|+.+-+.++.+++.+++..|... +.-....+..++..+
T Consensus 90 La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~ 167 (278)
T PF08631_consen 90 LANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQ 167 (278)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHH
Confidence 66777766644 5677778888655322 1344444566666699999999999999987 221335556555555
Q ss_pred -HhcCChHHHHHHHHHHHhCCCCCCHH
Q 005580 433 -CNNGDVDKACSVEEHMLEHGVYPEEP 458 (690)
Q Consensus 433 -~k~g~~~~A~~l~~~M~~~gv~pd~~ 458 (690)
... ....|...++.+....+.|...
T Consensus 168 l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 168 LAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 443 3456777777777666666653
No 329
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.55 E-value=9.2e+02 Score=25.01 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=78.1
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHC---CC--CCCcchHHHHHHHHHhc
Q 005580 364 KKYAFQRGFEIYEKMCLDEVPMNEA---SLTAVGRMAMSMGDGDMAFDMVKRMKSL---GI--NPRLRSYGPALSVFCNN 435 (690)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~---tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g~--~Pd~~ty~~lI~~~~k~ 435 (690)
+...+++|+.-|.+..+-.-..-.. ..--+|..+.+.|++++..+-+.+|... .+ .-...+-|++++...-.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4458889999998877642222333 3455688889999999998888887532 11 22456778899888877
Q ss_pred CChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 436 GDVDKACSVEEHMLEH-----GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 436 g~~~~A~~l~~~M~~~-----gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+++.-.++++.-.+. +-..--.|-.-|-..|...|.+.+..++++++..+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S 174 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS 174 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH
Confidence 7777766666543221 11112223344555566666777777777777654
No 330
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.51 E-value=1.2e+02 Score=23.62 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=16.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 462 ALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+|.||...|++++|.++++++...
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4567777777777777777766654
No 331
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=21.06 E-value=3.5e+02 Score=29.66 Aligned_cols=136 Identities=7% Similarity=-0.089 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCC
Q 005580 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (690)
Q Consensus 304 ~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~ 383 (690)
..+++.+.+.|+.|+.++=+ +-.+ +|.++.-.+..++..+++....
T Consensus 99 ~Gv~kaL~e~gl~p~~i~Gt-----------------------------S~Ga-ivaa~~a~~~~~e~~~~l~~~~---- 144 (391)
T cd07229 99 LGVVKALWLRGLLPRIITGT-----------------------------ATGA-LIAALVGVHTDEELLRFLDGDG---- 144 (391)
T ss_pred HHHHHHHHHcCCCCceEEEe-----------------------------cHHH-HHHHHHHcCCHHHHHHHHhccc----
Confidence 46777888889999887765 1223 5555555566666666665321
Q ss_pred CCCHHHHHHHHH----HHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH-----------
Q 005580 384 PMNEASLTAVGR----MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM----------- 448 (690)
Q Consensus 384 ~pd~~tyn~LI~----~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M----------- 448 (690)
.|...+...-. ++...+..+.-...++...+.|...|...+--.+..+...-.+++|++--...
T Consensus 145 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~ 223 (391)
T cd07229 145 -IDLSAFNRLRGKKSLGYSGYGWLGTLGRRIQRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVS 223 (391)
T ss_pred -hhhhhhhhhccccccccccccccchHHHHHHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCC
Confidence 11111111000 01111112222333444445565566666655555555545555555322211
Q ss_pred -----HhCCCCCCHHHHHHHHHHHHHcCChH
Q 005580 449 -----LEHGVYPEEPELEALLRVSVEAGKGD 474 (690)
Q Consensus 449 -----~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (690)
...--.||+..|.++...++--|-+.
T Consensus 224 ~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 224 GSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred CCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 11113588888888877766555443
No 332
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=7e+02 Score=26.72 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCcchHHH--HHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH-
Q 005580 391 TAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGP--ALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPE- 459 (690)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ty~~--lI~~~~k~g~~~~A~~l~~~M~~-----~gv~pd~~t- 459 (690)
-.++...-+.++.++|+++++++.+. --.||.+.|-. +...+...|++.++.+++++..+ .|+.|++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34444555667999999999999864 23477777754 44455567999999999998887 688886654
Q ss_pred HHHH-HHHHHHcCChHHH
Q 005580 460 LEAL-LRVSVEAGKGDRV 476 (690)
Q Consensus 460 y~~L-i~~~~~~g~~~~A 476 (690)
|..+ -..|-+.|++...
T Consensus 159 fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 3333 2334555665543
No 333
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.92 E-value=5.5e+02 Score=25.19 Aligned_cols=97 Identities=9% Similarity=-0.109 Sum_probs=58.2
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH-HHHhcCCh--HHHHHHHHHHHHCCCCCCc----
Q 005580 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGR-MAMSMGDG--DMAFDMVKRMKSLGINPRL---- 422 (690)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--g~~pd~~tyn~LI~-~~~~~g~~--~~A~~l~~~M~~~g~~Pd~---- 422 (690)
+-++... -...+.|++++|.+-++++.+. -++--...|.-+.. ++|..+.- -+|.-++.-.... ..|..
T Consensus 30 ~r~s~~a-I~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL~ 107 (204)
T COG2178 30 VRLSGEA-IFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEELG 107 (204)
T ss_pred HHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHcC
Confidence 3344423 3345778888888888877642 12223345666666 77777654 4666666655543 33433
Q ss_pred chHHHHHHHHH--------------hcCChHHHHHHHHHHHh
Q 005580 423 RSYGPALSVFC--------------NNGDVDKACSVEEHMLE 450 (690)
Q Consensus 423 ~ty~~lI~~~~--------------k~g~~~~A~~l~~~M~~ 450 (690)
+.+-.-|.|.| +.|+++.|.+.++-|..
T Consensus 108 V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 108 VPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444555554 56888999888888864
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=20.33 E-value=2.4e+02 Score=18.02 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMK 414 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~ 414 (690)
+|..+-..|...|+.++|.+.|++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555566666666666665543
No 335
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=20.30 E-value=62 Score=27.58 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHhhcCCccEEEeccccc
Q 005580 588 RNSSFQKFQKWLDYYGPFEAVVDAANVG 615 (690)
Q Consensus 588 ~~~~~~~F~~~l~~~~pyd~viDGaNvg 615 (690)
.++..+.|++||...++|-..||++++-
T Consensus 55 p~~~vd~mk~wl~~~gsP~s~I~~~ef~ 82 (98)
T KOG3360|consen 55 PPEKVDEMKEWLLTRGSPVSAIDRAEFS 82 (98)
T ss_pred CHHHHHHHHHHHHhcCChhHheeeeeec
Confidence 4477999999999999999999999864
No 336
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=20.09 E-value=5.4e+02 Score=25.07 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCCCC--HHHHH-----HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc
Q 005580 369 QRGFEIYEKMCLDEVPMN--EASLT-----AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (690)
Q Consensus 369 ~~A~~lf~~M~~~g~~pd--~~tyn-----~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~ 435 (690)
+.|+.+|+...+.--.|. .-..- ..+-.|.+.|.+++|.++++...+. |+....-.-+....+.
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~ 156 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHc
Confidence 567777777665432221 11111 2223566667777777777666553 4544444444444443
No 337
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=20.08 E-value=4.4e+02 Score=27.66 Aligned_cols=58 Identities=19% Similarity=0.175 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M 448 (690)
++..-+.|..+|.+.+|.++.+...... ..+...|-.|+..+...|+--.|.+-++.|
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444455666666666666666554432 234455666666666666655555555444
Done!