Query 005580
Match_columns 690
No_of_seqs 547 out of 3424
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 18:19:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005580.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2088-2092//hhsearch_pdb/005580hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 1.0 1 1 574.3 36.1 402 167-690 7-408 (501)
2 4g26_A Pentatricopeptide repea 1.0 1 1 277.4 22.8 190 148-436 26-224 (501)
3 3spa_A Mtrpol, DNA-directed RN 1.0 1 1 184.9 9.5 117 190-332 126-247 (1134)
4 2xpi_A Anaphase-promoting comp 1.0 1 1 184.1 18.8 320 147-511 83-461 (597)
5 3spa_A Mtrpol, DNA-directed RN 1.0 1 1 181.2 6.1 119 146-287 125-245 (1134)
6 2xpi_A Anaphase-promoting comp 1.0 1 1 171.3 24.8 310 159-511 126-495 (597)
7 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 108.5 27.4 285 162-486 11-300 (388)
8 1b89_A Protein (clathrin heavy 1.0 1 1 106.6 8.9 223 161-486 14-236 (449)
9 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 106.5 23.8 286 159-486 76-368 (388)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 102.9 27.3 293 159-486 35-358 (450)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=574.31 Aligned_cols=402 Identities=51% Similarity=0.896 Sum_probs=368.8
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 41768999987428988878988599999999999915998899999999999299989999999999998144587666
Q 005580 167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246 (690)
Q Consensus 167 ~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~ 246 (690)
..+..+...+.+++ ....|+ ..++.+|++||+.|++++|+++|++|+..|+.||.+|||+||++|++.
T Consensus 7 s~~e~L~~~~~~k~----~~~spe-~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~------- 74 (501)
T 4g26_A 7 SPSENLSRKAKKKA----IQQSPE-ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA------- 74 (501)
T ss_dssp ---------------------CHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC-------
T ss_pred CHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC-------
T ss_conf 45999999999826----668979-999999999985989999999999999818998783999999999857-------
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 88895566876753202450000146898863100201255311111224788355999999999739988732100256
Q 005580 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQ 326 (690)
Q Consensus 247 ~k~g~~~~A~~i~~~~~~~s~em~~~~g~~d~~tyn~li~~~~~~~~~~~~g~~~~A~~l~~eM~~~g~~Pd~~ty~~~~ 326 (690)
+...
T Consensus 75 ---~~~~------------------------------------------------------------------------- 78 (501)
T 4g26_A 75 ---EAAT------------------------------------------------------------------------- 78 (501)
T ss_dssp ---CCCS-------------------------------------------------------------------------
T ss_pred ---CCHH-------------------------------------------------------------------------
T ss_conf ---8304-------------------------------------------------------------------------
Q ss_pred HHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 65011223589951221037887856328999988981068899999999997599999999999999999945996799
Q 005580 327 LLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (690)
Q Consensus 327 li~g~~~~a~~~~~~m~~~g~~pd~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A 406 (690)
..++.+.+++|.++|++|...|+.||..|||+||.+|++.|++++|
T Consensus 79 ----------------------------------~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A 124 (501)
T 4g26_A 79 ----------------------------------ESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMA 124 (501)
T ss_dssp ----------------------------------SSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred ----------------------------------HHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf ----------------------------------3332124999999999999808999899999999999846977889
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999879987740099999999946995899999999986799899999999999999829947999999999973
Q 005580 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 407 ~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.++|++|++.|+.||..||+++|.+||+.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|++.
T Consensus 125 ~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 125 FDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999728988611104899999988899999999999986299999999999999985389899999999999994
Q ss_pred CCCCCHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEECC
Q ss_conf 79999449999999970649887100121146788876505996334543688861688632138985443466001427
Q 005580 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIID 566 (690)
Q Consensus 487 ~~~~~p~t~~~I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~m~~~g~~p~~vt~t~vl~~G~C~~~~~~L~~i~ 566 (690)
+..|++.||++|..||.+..+...++..|+...+.+++...|++|++.+|.|...|.+..+.+...|.|.+|+..|.+++
T Consensus 205 g~~ps~~T~~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~ 284 (501)
T 4g26_A 205 VRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCID 284 (501)
T ss_dssp TSSBCHHHHHHHHHHHHSHHHHTCCBSCCCHHHHHHHHHHHTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCC
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCC
T ss_conf 89969999999999983070044433222245544567506754344444466750477632115887064323305102
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99889999999999988622132327999998813399628985331012357999944799999999962999993189
Q 005580 567 LDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLI 646 (690)
Q Consensus 567 l~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~~pyd~viDGaNvg~~~q~~~~~~~i~~vv~~l~~~~~~~~~~lv 646 (690)
+++++++.|.+.|.+.++.++++++|+.|++|+++++|||+||||||||||+|++|++.|++.++..+.+..+++++|||
T Consensus 285 l~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~~p~d~vIDG~NV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv 364 (501)
T 4g26_A 285 INPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLV 364 (501)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTSCCCSEEEEHHHHHHTTCSSCCHHHHHHHHHHHHHHSTTCCCCEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 79899999999999998736348999999999984699210210100201156656678999999999998434577189
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCC
Q ss_conf 95133237999999467999999973890661899999776789
Q 005580 647 VLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCYKV 690 (690)
Q Consensus 647 vL~~~~~~~~~~~~~~~~~l~~~w~~~~~ly~tp~~snDD~ywl 690 (690)
|||++|+.++.+..|++++++++|++++.+|.||++||||||||
T Consensus 365 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~~~l 408 (501)
T 4g26_A 365 ILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYWL 408 (501)
T ss_dssp EEEHHHHTSGGGSSHHHHHHHHHHHHTTCEEEECTTCCHHHHHH
T ss_pred EEEHHHHCCCCCCCHHHHHHHHHHHHCCEEEECCCCCCCHHHHH
T ss_conf 84064416665588788999999996696996899887668999
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=277.39 Aligned_cols=190 Identities=12% Similarity=0.135 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHH
Q ss_conf 24245554568875313954176899998742898887898859999999999991599---------889999999999
Q 005580 148 SKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGD---------VMGAIRLYDKAQ 218 (690)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~---------~~~A~~lf~~M~ 218 (690)
-..++..++ ..++.++.++|.++|++|.+.| +.||..+||++|.+|++.+. ++.|+++|++|.
T Consensus 26 e~~l~~~id--~c~k~G~~~~A~~lf~~M~~~G------v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~ 97 (501)
T 4g26_A 26 EALLKQKLD--MCSKKGDVLEALRLYDEARRNG------VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97 (501)
T ss_dssp HHHHHHHHH--HTTTSCCHHHHHHHHHHHHHHT------CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999999--9985989999999999999818------99878399999999985783043332124999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 92999899999999999981445876668889556687675320245000014689886310020125531111122478
Q 005580 219 REGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSY 298 (690)
Q Consensus 219 ~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~d~~tyn~li~~~~~~~~~~~~g 298 (690)
..|+.||..|||+||.+|+ +.|
T Consensus 98 ~~G~~Pd~~tyn~lI~~~~----------------------------------------------------------~~g 119 (501)
T 4g26_A 98 VDKVVPNEATFTNGARLAV----------------------------------------------------------AKD 119 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHH----------------------------------------------------------HHT
T ss_pred HHCCCCCHHHHHHHHHHHH----------------------------------------------------------HCC
T ss_conf 8089998999999999998----------------------------------------------------------469
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 83559999999997399887321002566501122358995122103788785632899998898106889999999999
Q 005580 299 RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (690)
Q Consensus 299 ~~~~A~~l~~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t~n~~li~~~~k~g~~~~A~~lf~~M 378 (690)
++++|.++|++|...|+.||.+||+ + +|.+||+.|++++|.++|++|
T Consensus 120 ~~~~A~~l~~~M~~~g~~Pd~~tyn--------------------------------~-lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 120 DPEMAFDMVKQMKAFGIQPRLRSYG--------------------------------P-ALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp CHHHHHHHHHHHHHTTCCCCHHHHH--------------------------------H-HHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCCEEH--------------------------------H-HHHHHHHCCCHHHHHHHHHHH
T ss_conf 7788999999999728988611104--------------------------------8-999999888999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 7599999999999999999945996799999999998799877400999999999469
Q 005580 379 CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (690)
Q Consensus 379 ~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (690)
...|+.||..||++||++|++.|++++|.++|++|++.|+.|+..||+.++..|+..+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
T ss_conf 8629999999999999998538989999999999999489969999999999983070
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=184.90 Aligned_cols=117 Identities=11% Similarity=0.044 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 59999999999991599889999999999---929998999999999999814458766688895566876753202450
Q 005580 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQ---REGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (690)
Q Consensus 190 ~~~tyn~lI~~~~k~G~~~~A~~lf~~M~---~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~g~~~~A~~i~~~~~~~s 266 (690)
-..+||++|++||+.|++++|.++|++|. ..|+.||.+|||+||++|| +.|++++|.++|.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glc----------k~G~~~eA~~Lf~------ 189 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA----------RQGAFKELVYVLF------ 189 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHH----------HHTCHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------HCCCHHHHHHHHH------
T ss_conf 999999999999868899999999999998764599977767999999998----------6899999999999------
Q ss_pred CCCCCCCCCC-CCCHHHCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCC
Q ss_conf 0001468988-631002012553111112247883-55999999999739988732100256650112
Q 005580 267 TELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS 332 (690)
Q Consensus 267 ~em~~~~g~~-d~~tyn~li~~~~~~~~~~~~g~~-~~A~~l~~eM~~~g~~Pd~~ty~~~~li~g~~ 332 (690)
+|... |+. |++|||+||++ +|+.|+. ++|.++|++|...|+.||.++|+ .++.+..
T Consensus 190 -eM~~~-G~~PDvvTYntLI~g------lcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~--~ll~~~e 247 (1134)
T 3spa_A 190 -MVKDA-GLTPDLLSYAAALQC------MGRQDQDAGTIERCLEQMSQEGLKLQALFTA--VLLSEED 247 (1134)
T ss_dssp -HHHHT-TCCCCHHHHHHHHHH------HHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH--SCCCHHH
T ss_pred -HHHHC-CCCCCHHHHHHHHHH------HHHCCCCHHHHHHHHHHHHHCCCCCCHHHCC--CCCCHHH
T ss_conf -99981-999859999999999------9868996999999999999809998731101--4637156
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=184.14 Aligned_cols=320 Identities=8% Similarity=-0.103 Sum_probs=230.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 12424555456887531395417689999874289888789885999999999999159988999999999992999899
Q 005580 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (690)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd~ 226 (690)
....++..+. ...+.++.++|..+|+.|.. ..|+..++..+..+|.+.|++++|+.+|+.+.. ..++.
T Consensus 83 ~~~~~~~~~~--~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 150 (597)
T 2xpi_A 83 REDYLRLWRH--DALMQQQYKCAAFVGEKVLD--------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSS 150 (597)
T ss_dssp HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCH
T ss_pred HHHHHHHHHH--HHHHCCCCHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHC--CCCCH
T ss_conf 9999999999--99874583479999999996--------089935799999999974769999999998733--54565
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC--------------CCC-CCCHHHCCCCCCCCC
Q ss_conf 99999999998144587666888955668767532024500001468--------------988-631002012553111
Q 005580 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR--------------DMD-NNGQLDYGSSPMIDK 291 (690)
Q Consensus 227 ~tyn~LL~a~~~~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~--------------g~~-d~~tyn~li~~~~~~ 291 (690)
.+++.++.+|. +.|++++|..+|+ ++.... +.+ +..+|+.++.+
T Consensus 151 ~~~~~l~~~~~----------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 209 (597)
T 2xpi_A 151 ACRYLAAFCLV----------KLYDWQGALNLLG-------ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV---- 209 (597)
T ss_dssp HHHHHHHHHHH----------HTTCHHHHHHHHC-------SSCTTC----------CCCSSCCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----
T ss_conf 08999999999----------8866999999984-------24886322323433432112351258999998899----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC-C-H-----------------------------------HHHHHCCC--
Q ss_conf 1122478835599999999973998873210-0-2-----------------------------------56650112--
Q 005580 292 LESNSSYRFDDLDSTFNEKENLGQFSNGHMK-L-N-----------------------------------SQLLDGRS-- 332 (690)
Q Consensus 292 ~~~~~~g~~~~A~~l~~eM~~~g~~Pd~~ty-~-~-----------------------------------~~li~g~~-- 332 (690)
|.+.|++++|..+|++|.+.+ |+.... . . ..++..++
T Consensus 210 --~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 210 --YTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred --HHHCCCHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf --998399899999999999729--3256999999985034615678999865774234430889999999999998073
Q ss_pred ---CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf ---23589951221037887856328999988981068899999999997599999999999999999945996799999
Q 005580 333 ---NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDM 409 (690)
Q Consensus 333 ---~~a~~~~~~m~~~g~~pd~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l 409 (690)
..|..++..+... .++..+++. ++..|.+.|+.++|.++|++|...+. .+..+++.++.++.+.|+.++|..+
T Consensus 286 g~~~~A~~~~~~~~~~--~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL--EKSSDLLLC-KADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp HHHHHHHHHHHTSTTG--GGCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--CCHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 1399999999876438--830999999-99999984689999999999997295-5379999999999982777799999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999879987740099999999946995899999999986799899999999999999829947999999999973799
Q 005580 410 VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (690)
Q Consensus 410 ~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~ 489 (690)
+++|.... ..+..+|+.+...|++.|+.++|.++|+++.... ..+..+|+.+..+|.+.|++++|..+|++|... .
T Consensus 362 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 437 (597)
T 2xpi_A 362 SNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--F 437 (597)
T ss_dssp HHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
T ss_conf 99998518-3547999999999998356999999999998729-777899999999999757779999999999986--8
Q ss_pred CC-HHHHHH-HHHHHCCHHHHHHH
Q ss_conf 99-449999-99997064988710
Q 005580 490 VS-PSTADV-IAKWFNSKEAARLG 511 (690)
Q Consensus 490 ~~-p~t~~~-I~~~~~~~~~~~a~ 511 (690)
+. +.++.. +..++..+...+|.
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 134389999999999857999999
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=181.16 Aligned_cols=119 Identities=5% Similarity=-0.052 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 51242455545688753139541768999987428988878988599999999999915998899999999999299989
Q 005580 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (690)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd 225 (690)
....+||..++ .+++.++.++|.++|++|.+. ...|+.||+++||++|++||+.|++++|+++|++|+..|+.||
T Consensus 125 ~~~~TynaLId--glcK~G~leeA~~Lf~eM~~m---~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 125 GQQQRLLAFFK--CCLLTDQLPLAHHLLVVHHGQ---RQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHS---HHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 69999999999--998688999999999999987---6459997776799999999868999999999999998199985
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCCCCC-CCCHHHCCCCC
Q ss_conf 999999999998144587666888955-668767532024500001468988-63100201255
Q 005580 226 QYHYNVLLYLCSSAAVGVVKPAKSGSG-MRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSP 287 (690)
Q Consensus 226 ~~tyn~LL~a~~~~~~~~~~~~k~g~~-~~A~~i~~~~~~~s~em~~~~g~~-d~~tyn~li~~ 287 (690)
.+|||+||+++| +.|+. ++|.++| ++|... |+. |.++|++++.+
T Consensus 200 vvTYntLI~glc----------K~G~~~e~A~~Ll-------~EM~~k-G~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 200 LLSYAAALQCMG----------RQDQDAGTIERCL-------EQMSQE-GLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHHHHHH----------HHTCCHHHHHHHH-------HHHHHH-TCCSHHHHHHSCCCH
T ss_pred HHHHHHHHHHHH----------HCCCCHHHHHHHH-------HHHHHC-CCCCCHHHCCCCCCH
T ss_conf 999999999998----------6899699999999-------999980-999873110146371
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=171.30 Aligned_cols=310 Identities=11% Similarity=-0.055 Sum_probs=166.4
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HC--------------CCC
Q ss_conf 875313954176899998742898887898859999999999991599889999999999-92--------------999
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQ-RE--------------GIK 223 (690)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~-~~--------------Gi~ 223 (690)
...+.++.++|.++|+.+.. ..++..+++.++.++.+.|++++|+++|+++. .. |..
T Consensus 126 ~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (597)
T 2xpi_A 126 VYCCTGDYARAKCLLTKEDL--------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIK 197 (597)
T ss_dssp HHHHTTCHHHHHHHHHHTCG--------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCC
T ss_pred HHHHCCCHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99974769999999998733--------5456508999999999886699999998424886322323433432112351
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC---------------------------
Q ss_conf 89999999999998144587666888955668767532024500001468988---------------------------
Q 005580 224 LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--------------------------- 276 (690)
Q Consensus 224 pd~~tyn~LL~a~~~~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~--------------------------- 276 (690)
++..+|+.+..+|. +.|+.++|...|. +|... +..
T Consensus 198 ~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 259 (597)
T 2xpi_A 198 LEASMCYLRGQVYT----------NLSNFDRAKECYK-------EALMV-DAKCYEAFDQLVSNHLLTADEEWDLVLKLN 259 (597)
T ss_dssp HHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHTTCSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHH-CCHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 25899999889999----------8399899999999-------99972-932569999999850346156789998657
Q ss_pred -----------CCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCC-----CCCCCCCH
Q ss_conf -----------63100201255311111224788355999999999739988732100256650112-----23589951
Q 005580 277 -----------NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDD 340 (690)
Q Consensus 277 -----------d~~tyn~li~~~~~~~~~~~~g~~~~A~~l~~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~ 340 (690)
....|+.++.. |++.|++++|..+|++|... .++..++. .+..++. ..|..++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~A~~~~~~~~~~--~~~~~~~~--~l~~~~~~~g~~~~A~~~~~ 329 (597)
T 2xpi_A 260 YSTYSKEDAAFLRSLYMLKLNK------TSHEDELRRAEDYLSSINGL--EKSSDLLL--CKADTLFVRSRFIDVLAITT 329 (597)
T ss_dssp THHHHGGGHHHHHHHHHTTSCT------TTTHHHHHHHHHHHHTSTTG--GGCHHHHH--HHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHCC--CCHHHHHH--HHHHHHHHHCCHHHHHHHHH
T ss_conf 7423443088999999999999------80731399999999876438--83099999--99999998468999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 22103788785632899998898106889999999999759999999999999999994599679999999999879987
Q 005580 341 QSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (690)
Q Consensus 341 ~m~~~g~~pd~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (690)
.+...+ ..+..+++. ++..+.+.|+.++|.++|++|... .+.+..+|+.+...|.+.|++++|.++|+++.+.. ..
T Consensus 330 ~~~~~~-~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 405 (597)
T 2xpi_A 330 KILEID-PYNLDVYPL-HLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQ 405 (597)
T ss_dssp HHHHHC-TTCCTTHHH-HHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHCC-CCCHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CC
T ss_conf 999729-553799999-999999827777999999999851-83547999999999998356999999999998729-77
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHH-H
Q ss_conf 74009999999994699589999999998679989999999999999982994799999999997379999-449999-9
Q 005580 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTADV-I 498 (690)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~-p~t~~~-I 498 (690)
+..+|+.++..+++.|+.++|.++|++|...+ ..+..+|..+..+|.+.|++++|..+|++|... .+. +.+|.. +
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 482 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELG 482 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_conf 78999999999997577799999999999868-134389999999999857999999999999984--888767999999
Q ss_pred HHHHCCHHHHHHH
Q ss_conf 9997064988710
Q 005580 499 AKWFNSKEAARLG 511 (690)
Q Consensus 499 ~~~~~~~~~~~a~ 511 (690)
..++..+...+|.
T Consensus 483 ~~~~~~g~~~~A~ 495 (597)
T 2xpi_A 483 VVAFNKSDMQTAI 495 (597)
T ss_dssp HHHHHTTCHHHHH
T ss_pred HHHHHHCCHHHHH
T ss_conf 9999818999999
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=108.50 Aligned_cols=285 Identities=11% Similarity=-0.055 Sum_probs=139.8
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 31395417689999874289888789885999999999999159988999999999992999899999999999981445
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 162 ~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~ 241 (690)
+.++.++|.+.+..+.+.. | .+...+..+-..+.+.|+.++|..+++..... .+.+...|..+-..+.
T Consensus 11 ~~g~~~~A~~~~~~~~~~~--p-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~---- 78 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE--P-----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYK---- 78 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH----
T ss_pred HCCCHHHHHHHHHHHHHHC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHH----
T ss_conf 7799999999999999849--7-----88999999999999868999999999999761-9786699999999998----
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 87666888955668767532024500001468988631002012553111112247883559999999997399887321
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~d~~tyn~li~~~~~~~~~~~~g~~~~A~~l~~eM~~~g~~Pd~~t 321 (690)
+.|+.++|...|. ++... .-.+...|..+... +...|++++|...|.++... .|+...
T Consensus 79 ------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~--~p~~~~ 136 (388)
T 1w3b_A 79 ------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAA------LVAAGDMEGAVQAYVSALQY--NPDLYC 136 (388)
T ss_dssp ------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHSCSSHHHHHHHHHHHH--CTTCTH
T ss_pred ------HCCCHHHHHHHHH-------HHHHC-CCCHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH--CCCCHH
T ss_conf ------7799999999999-------99874-96539999999999------99858999999999999975--989689
Q ss_pred CC--HHHHHH--CCCCCCCCCCHHHHHCCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 00--256650--112235899512210378878-5632899998898106889999999999759999999999999999
Q 005580 322 KL--NSQLLD--GRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (690)
Q Consensus 322 y~--~~~li~--g~~~~a~~~~~~m~~~g~~pd-~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~ 396 (690)
.. .+.+.. |....|...+..+... .|+ ...|+. +...+.+.|+.++|...|+++.... +-+...|..+-..
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 212 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSN-LGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNV 212 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHH
T ss_conf 9999999999846899999999999872--9897899999-9999998599999999999998559-8867999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99459967999999999987998774009999999994699589999999998679989999999999999982994799
Q 005580 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (690)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (690)
+...|++++|...++...... +-+..++..+...+.+.|+.++|...|+++.... +.+...|..+...+.+.|++++|
T Consensus 213 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 213 LKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 998578999999999998529-6878999999999998688999999999998649-99889999999999986997999
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999973
Q 005580 477 YYLLHKLRTS 486 (690)
Q Consensus 477 ~~ll~~M~~~ 486 (690)
...|+++...
T Consensus 291 ~~~~~~al~~ 300 (388)
T 1w3b_A 291 EDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999864
No 8
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=1.00 E-value=1 Score=106.62 Aligned_cols=223 Identities=13% Similarity=0.101 Sum_probs=178.4
Q ss_pred HHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 53139541768999987428988878988599999999999915998899999999999299989999999999998144
Q 005580 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (690)
Q Consensus 161 ~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~ 240 (690)
.+.++.++|.+.++.+. .. .+|..+..++.+.|++.+|++.|.+. +|..+|..++.++.
T Consensus 14 ~~~~~ld~A~~fae~~~------~~------~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae--- 72 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EP------AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN--- 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHCC------CH------HHHHHHHHHHHHCCCHHHHHHHHHCC------CCHHHHHHHHHHHH---
T ss_conf 97447999999998599------86------79999999998769989999999808------98799999999998---
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 58766688895566876753202450000146898863100201255311111224788355999999999739988732
Q 005580 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (690)
Q Consensus 241 ~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~d~~tyn~li~~~~~~~~~~~~g~~~~A~~l~~eM~~~g~~Pd~~ 320 (690)
..|+.++|...+. |... ..++..+.+.++.+ |.+.|+++++.++++ .|+..
T Consensus 73 -------~~g~~EeAi~yl~--------~ark-~~~~~~i~~~Li~~------Y~Klg~l~e~e~f~~-------~pn~~ 123 (449)
T 1b89_A 73 -------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPNNA 123 (449)
T ss_dssp ----------------------------------------------------------CHHHHTTTTT-------CC---
T ss_pred -------HCCCHHHHHHHHH--------HHHH-HCCCCHHHHHHHHH------HHHHCCHHHHHHHHC-------CCCHH
T ss_conf -------6798999999999--------9987-48410257999999------998199999999884-------99689
Q ss_pred CCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
Q ss_conf 10025665011223589951221037887856328999988981068899999999997599999999999999999945
Q 005580 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400 (690)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~ 400 (690)
+ |+. +-+.|...|..++|...|..+ ..|..+..++.+.
T Consensus 124 a--------------------------------~~~-IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~L 161 (449)
T 1b89_A 124 H--------------------------------IQQ-VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 161 (449)
T ss_dssp ----------------------------------------------CTTTHHHHHHHT---------TCHHHHHHHHHTT
T ss_pred H--------------------------------HHH-HHHHHHHCCCHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_conf 9--------------------------------999-999998718899999999976---------5699999999986
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 99679999999999879987740099999999946995899999999986799899999999999999829947999999
Q 005580 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (690)
Q Consensus 401 g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll 480 (690)
|++++|.+.+..+ .+..+|..++.+|+..|+++.|...... +..+......++..|.+.|.+++|..+|
T Consensus 162 g~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 162 GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp TCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHC------CCCHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 4599999999981------8956599999999980848999998999-----9848766999999999888999999999
Q ss_pred HHHHHC
Q ss_conf 999973
Q 005580 481 HKLRTS 486 (690)
Q Consensus 481 ~~M~~~ 486 (690)
+.-...
T Consensus 231 e~aL~l 236 (449)
T 1b89_A 231 EAALGL 236 (449)
T ss_dssp HHHTTS
T ss_pred HHHHCC
T ss_conf 998677
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=106.53 Aligned_cols=286 Identities=12% Similarity=-0.049 Sum_probs=139.2
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q ss_conf 87531395417689999874289888789885999999999999159988999999999992999899-99999999998
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCS 237 (690)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd~-~tyn~LL~a~~ 237 (690)
...+.++.++|.+.|+.+.... | .+...|..+...+.+.|++++|+..|.++.... |+. ..+..+-..+.
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~--p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLK--P-----DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC--C-----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_conf 9987799999999999998749--6-----539999999999998589999999999999759--896899999999999
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 14458766688895566876753202450000146898863100201255311111224788355999999999739988
Q 005580 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (690)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~d~~tyn~li~~~~~~~~~~~~g~~~~A~~l~~eM~~~g~~P 317 (690)
..|+.++|...|. ++... ...+...|+.+... +...|++++|...|+++.... |
T Consensus 147 ----------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p 200 (388)
T 1w3b_A 147 ----------ALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FNAQGEIWLAIHHFEKAVTLD--P 200 (388)
T ss_dssp ----------TTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHC--T
T ss_pred ----------HCCCHHHHHHHHH-------HHHHH-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHCC--C
T ss_conf ----------8468999999999-------99872-98978999999999------998599999999999998559--8
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCHHHHH-----CCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 732100256650112235899512210-----378878-56328999988981068899999999997599999999999
Q 005580 318 NGHMKLNSQLLDGRSNLERGPDDQSRK-----KDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (690)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~-----~g~~pd-~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn 391 (690)
+.... ...-|.+......++++.. ..+.|+ ...+.. +...+.+.|+.++|.+.|+++.... +.+..+|.
T Consensus 201 ~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 275 (388)
T 1w3b_A 201 NFLDA---YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN-LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYC 275 (388)
T ss_dssp TCHHH---HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHH
T ss_pred CCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHH
T ss_conf 86799---9999999998578999999999998529687899999-9999998688999999999998649-99889999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999994599679999999999879987740099999999946995899999999986799899999999999999829
Q 005580 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (690)
Q Consensus 392 ~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g 471 (690)
.+...+.+.|++++|...++++... .+.+..+|..+...+.+.|+.++|...++++.+.. +.+...+..+...+.+.|
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCC
T ss_conf 9999999869979999999999864-94449999999999998489999999999998609-873999977999999868
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 947999999999973
Q 005580 472 KGDRVYYLLHKLRTS 486 (690)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (690)
++++|...|+++...
T Consensus 354 ~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 354 KLQEALMHYKEAIRI 368 (388)
T ss_dssp CCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 889999999999861
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=102.90 Aligned_cols=293 Identities=9% Similarity=-0.076 Sum_probs=185.8
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 87531395417689999874289888789885999999999999159988999999999992999899999999999981
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (690)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (690)
...+.++..+|..+|+.+.+.. +.+...|..+..++.+.|++++|+..|+++...+ +.+...+..+...+.
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 105 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL- 105 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHH-
T ss_conf 9998799999999999999849-------7168999999999998799799999999998449-874899999999999-
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC---CHHHCCCCC------CCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4458766688895566876753202450000146898863---100201255------3111112247883559999999
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN---GQLDYGSSP------MIDKLESNSSYRFDDLDSTFNE 309 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~d~---~tyn~li~~------~~~~~~~~~~g~~~~A~~l~~e 309 (690)
+.|+.++|...|. ++... .-.+. ..|..+... ......+...|++++|...|++
T Consensus 106 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 106 ---------KQGKLDEAEDDFK-------KVLKS-NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------HCCCHHHHHHHHH-------HHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf ---------8699999999999-------99724-999701688999999999999999999999986899999999999
Q ss_pred HHHCCCCCCCCCCCHHHHHHCCC-----CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99739988732100256650112-----2358995122103788785632899998898106889999999999759999
Q 005580 310 KENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP 384 (690)
Q Consensus 310 M~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~g~~ 384 (690)
+..... .+...+. .+...+. ..|...+..+... .+.+...+.. +...|.+.|+.++|...|+++.... +
T Consensus 169 ~~~~~~-~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-p 242 (450)
T 2y4t_A 169 ILEVCV-WDAELRE--LRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYK-ISTLYYQLGDHELSLSEVRECLKLD-Q 242 (450)
T ss_dssp HHHHCT-TCHHHHH--HHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHCC-CCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHC-C
T ss_conf 998688-9769999--9999998779999999999999986-8898799999-9999997599999999999998759-9
Q ss_pred CCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHCCCCCC-----CCHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999999------------9999945996799999999998799877-----40099999999946995899999999
Q 005580 385 MNEASLTAV------------GRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEEH 447 (690)
Q Consensus 385 pd~~tyn~L------------i~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (690)
.+...+..+ ...+.+.|++++|..+|+.+... .|+ ...|..+...+.+.|+.++|...+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 80899999999999999999999998717999999999999850--8733689999999999999987889999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 986799899999999999999829947999999999973
Q 005580 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 448 M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.... +.+...|..+...|...|++++|...+++....
T Consensus 321 a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 321 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 98848-454899999999998703799999999999885
Done!