Query 005581
Match_columns 690
No_of_seqs 505 out of 3267
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 01:43:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10949 protease 4; Provision 100.0 7.5E-95 1.6E-99 826.9 55.8 487 134-634 51-564 (618)
2 TIGR00705 SppA_67K signal pept 100.0 2E-92 4.4E-97 807.6 55.2 492 132-634 35-547 (584)
3 cd07018 S49_SppA_67K_type Sign 100.0 3.2E-44 7E-49 366.0 22.4 213 142-354 1-221 (222)
4 COG0616 SppA Periplasmic serin 100.0 4.4E-44 9.4E-49 382.4 22.3 217 389-610 60-276 (317)
5 TIGR00706 SppA_dom signal pept 100.0 1E-41 2.2E-46 344.1 25.0 206 140-358 1-207 (207)
6 cd07022 S49_Sppa_36K_type Sign 100.0 5.3E-41 1.1E-45 340.6 24.7 210 140-353 1-213 (214)
7 cd07023 S49_Sppa_N_C Signal pe 100.0 4.8E-40 1E-44 332.1 23.4 206 140-353 1-207 (208)
8 PRK11778 putative inner membra 100.0 3.4E-40 7.3E-45 349.9 23.2 225 387-631 89-314 (330)
9 TIGR00706 SppA_dom signal pept 100.0 7.9E-40 1.7E-44 330.3 23.6 207 389-608 1-207 (207)
10 PRK10949 protease 4; Provision 100.0 2.3E-39 5.1E-44 370.8 26.3 219 137-360 324-543 (618)
11 cd07022 S49_Sppa_36K_type Sign 100.0 3.2E-39 6.9E-44 327.5 23.7 212 389-602 1-212 (214)
12 cd07019 S49_SppA_1 Signal pept 100.0 4.5E-38 9.8E-43 318.4 24.5 208 140-353 1-210 (211)
13 cd07018 S49_SppA_67K_type Sign 100.0 2.4E-38 5.2E-43 322.9 20.7 211 392-604 2-221 (222)
14 PRK11778 putative inner membra 100.0 6.1E-38 1.3E-42 332.6 23.2 208 138-357 89-297 (330)
15 cd07023 S49_Sppa_N_C Signal pe 100.0 2.7E-37 5.9E-42 312.0 22.1 206 389-603 1-207 (208)
16 TIGR00705 SppA_67K signal pept 100.0 7.4E-37 1.6E-41 350.4 27.4 219 137-360 306-525 (584)
17 cd07019 S49_SppA_1 Signal pept 100.0 8.1E-37 1.7E-41 309.3 23.4 208 389-603 1-210 (211)
18 COG0616 SppA Periplasmic serin 100.0 3.9E-36 8.5E-41 321.2 22.9 214 140-358 60-274 (317)
19 PF01343 Peptidase_S49: Peptid 100.0 9.4E-35 2E-39 280.2 14.3 152 207-360 2-154 (154)
20 PF01343 Peptidase_S49: Peptid 100.0 6.1E-32 1.3E-36 260.7 12.0 151 459-610 4-154 (154)
21 TIGR03222 benzo_boxC benzoyl-C 100.0 2.7E-27 5.8E-32 268.0 31.4 428 138-671 18-543 (546)
22 cd07014 S49_SppA Signal peptid 100.0 2.9E-28 6.3E-33 240.2 19.8 172 143-353 1-176 (177)
23 PRK08184 benzoyl-CoA-dihydrodi 100.0 7E-27 1.5E-31 265.3 32.3 426 138-670 22-546 (550)
24 cd07014 S49_SppA Signal peptid 100.0 1E-27 2.2E-32 236.3 19.7 173 392-602 1-175 (177)
25 cd00394 Clp_protease_like Case 99.9 1.1E-26 2.4E-31 225.1 17.4 160 392-593 1-161 (161)
26 cd00394 Clp_protease_like Case 99.9 3.8E-26 8.3E-31 221.3 17.7 159 143-343 1-161 (161)
27 cd07020 Clp_protease_NfeD_1 No 99.9 8E-25 1.7E-29 217.7 18.1 167 390-602 1-172 (187)
28 cd07013 S14_ClpP Caseinolytic 99.9 5.8E-22 1.2E-26 192.8 17.3 158 392-593 2-162 (162)
29 cd07015 Clp_protease_NfeD Nodu 99.9 2E-21 4.4E-26 189.9 17.5 165 390-600 1-170 (172)
30 cd07021 Clp_protease_NfeD_like 99.9 2.3E-21 5E-26 191.1 17.6 161 390-600 1-176 (178)
31 cd07016 S14_ClpP_1 Caseinolyti 99.9 4.1E-21 9E-26 186.2 16.4 158 392-593 2-160 (160)
32 cd07020 Clp_protease_NfeD_1 No 99.8 7.9E-20 1.7E-24 181.9 17.8 165 141-351 1-171 (187)
33 cd07021 Clp_protease_NfeD_like 99.8 3E-19 6.4E-24 176.2 17.5 160 141-350 1-176 (178)
34 cd07015 Clp_protease_NfeD Nodu 99.8 6.3E-19 1.4E-23 172.4 17.9 164 141-350 1-170 (172)
35 cd07013 S14_ClpP Caseinolytic 99.8 1.3E-18 2.9E-23 169.2 17.3 157 143-343 2-162 (162)
36 cd07016 S14_ClpP_1 Caseinolyti 99.8 5.7E-18 1.2E-22 164.3 18.3 157 143-343 2-160 (160)
37 cd07017 S14_ClpP_2 Caseinolyti 99.8 3.9E-18 8.5E-23 167.4 16.4 158 392-593 11-171 (171)
38 KOG1680 Enoyl-CoA hydratase [L 99.8 9.5E-19 2.1E-23 178.3 10.0 164 386-608 43-227 (290)
39 PRK05980 enoyl-CoA hydratase; 99.8 3.6E-18 7.9E-23 178.4 13.9 218 387-667 10-258 (260)
40 PRK07854 enoyl-CoA hydratase; 99.8 3E-18 6.6E-23 177.4 12.9 215 387-669 7-240 (243)
41 PRK08138 enoyl-CoA hydratase; 99.8 5E-18 1.1E-22 177.5 14.3 164 387-607 15-197 (261)
42 PRK06563 enoyl-CoA hydratase; 99.8 5.4E-18 1.2E-22 176.7 14.0 219 387-668 6-251 (255)
43 PRK09674 enoyl-CoA hydratase-i 99.8 6.4E-18 1.4E-22 176.1 14.4 168 387-611 9-199 (255)
44 TIGR01929 menB naphthoate synt 99.8 6.9E-18 1.5E-22 176.3 14.5 218 387-668 10-255 (259)
45 PRK05862 enoyl-CoA hydratase; 99.8 7.5E-18 1.6E-22 175.8 14.6 163 388-607 12-193 (257)
46 PRK03580 carnitinyl-CoA dehydr 99.8 7.5E-18 1.6E-22 176.2 14.3 219 387-669 10-258 (261)
47 PRK06142 enoyl-CoA hydratase; 99.8 7.1E-18 1.5E-22 177.4 14.0 219 387-668 13-269 (272)
48 PRK08258 enoyl-CoA hydratase; 99.8 7.9E-18 1.7E-22 177.5 14.3 220 387-669 24-274 (277)
49 PLN02600 enoyl-CoA hydratase 99.8 7.4E-18 1.6E-22 175.3 13.7 219 387-668 2-247 (251)
50 PRK07468 enoyl-CoA hydratase; 99.7 1E-17 2.2E-22 175.3 14.2 218 388-669 13-259 (262)
51 PRK07658 enoyl-CoA hydratase; 99.7 8.9E-18 1.9E-22 175.1 13.8 163 387-607 9-193 (257)
52 PLN02664 enoyl-CoA hydratase/d 99.7 8.4E-18 1.8E-22 177.2 13.6 219 387-668 15-271 (275)
53 PRK05809 3-hydroxybutyryl-CoA 99.7 9.5E-18 2.1E-22 175.3 13.8 219 387-668 11-256 (260)
54 PRK07657 enoyl-CoA hydratase; 99.7 1.1E-17 2.3E-22 175.0 14.1 220 387-669 11-257 (260)
55 PRK06144 enoyl-CoA hydratase; 99.7 1.3E-17 2.8E-22 174.6 14.5 217 387-669 15-259 (262)
56 PRK09245 enoyl-CoA hydratase; 99.7 1E-17 2.3E-22 175.5 13.6 168 387-611 10-210 (266)
57 PRK09076 enoyl-CoA hydratase; 99.7 1.2E-17 2.6E-22 174.4 14.0 219 387-669 10-255 (258)
58 PRK08252 enoyl-CoA hydratase; 99.7 1.5E-17 3.3E-22 173.2 14.8 216 387-669 10-251 (254)
59 PRK06494 enoyl-CoA hydratase; 99.7 1.5E-17 3.3E-22 173.7 14.8 219 387-668 11-255 (259)
60 PRK08139 enoyl-CoA hydratase; 99.7 1.2E-17 2.6E-22 175.2 14.0 219 387-669 18-263 (266)
61 PRK07509 enoyl-CoA hydratase; 99.7 1.3E-17 2.8E-22 174.4 13.8 218 387-667 10-258 (262)
62 PRK05981 enoyl-CoA hydratase; 99.7 1.4E-17 3.1E-22 174.5 13.9 220 387-669 11-263 (266)
63 PRK12553 ATP-dependent Clp pro 99.7 3.7E-17 8.1E-22 165.1 16.3 163 391-595 36-201 (207)
64 TIGR02280 PaaB1 phenylacetate 99.7 1.7E-17 3.6E-22 173.1 14.2 219 387-669 6-253 (256)
65 PRK05995 enoyl-CoA hydratase; 99.7 2.1E-17 4.6E-22 172.8 14.5 163 387-607 11-197 (262)
66 PRK08140 enoyl-CoA hydratase; 99.7 1.9E-17 4.2E-22 173.2 14.1 219 387-669 11-259 (262)
67 PRK07511 enoyl-CoA hydratase; 99.7 1.7E-17 3.7E-22 173.3 13.5 216 387-669 10-258 (260)
68 PRK06127 enoyl-CoA hydratase; 99.7 2E-17 4.4E-22 173.7 14.2 164 387-607 18-205 (269)
69 PLN03214 probable enoyl-CoA hy 99.7 1.4E-17 2.9E-22 175.8 12.1 225 387-679 19-275 (278)
70 PRK06072 enoyl-CoA hydratase; 99.7 3.3E-17 7.2E-22 170.1 14.2 218 387-668 7-244 (248)
71 PRK08150 enoyl-CoA hydratase; 99.7 3.1E-17 6.7E-22 171.0 14.0 161 388-607 10-191 (255)
72 PRK06023 enoyl-CoA hydratase; 99.7 3.3E-17 7.2E-22 170.4 14.1 167 388-611 14-204 (251)
73 PRK05869 enoyl-CoA hydratase; 99.7 1.3E-16 2.8E-21 163.1 18.2 164 387-608 15-199 (222)
74 PRK07396 dihydroxynaphthoic ac 99.7 3.1E-17 6.7E-22 172.7 13.9 164 387-607 20-206 (273)
75 PRK07799 enoyl-CoA hydratase; 99.7 3.7E-17 8.1E-22 171.1 14.2 162 388-606 13-198 (263)
76 PRK06495 enoyl-CoA hydratase; 99.7 4.6E-17 1E-21 169.9 14.1 220 387-669 11-254 (257)
77 PRK07260 enoyl-CoA hydratase; 99.7 4.7E-17 1E-21 169.6 14.1 163 388-607 10-197 (255)
78 PRK05870 enoyl-CoA hydratase; 99.7 3.2E-17 6.9E-22 170.3 12.7 167 387-611 10-200 (249)
79 PLN02921 naphthoate synthase 99.7 4.7E-17 1E-21 175.1 14.4 219 387-669 74-320 (327)
80 PRK06190 enoyl-CoA hydratase; 99.7 1.5E-16 3.3E-21 166.2 17.8 164 387-607 11-193 (258)
81 PRK06210 enoyl-CoA hydratase; 99.7 4.8E-17 1E-21 171.1 14.1 162 389-608 15-208 (272)
82 TIGR03189 dienoyl_CoA_hyt cycl 99.7 5.6E-17 1.2E-21 168.7 14.4 217 388-669 9-248 (251)
83 TIGR03210 badI 2-ketocyclohexa 99.7 1.8E-16 3.9E-21 165.4 17.9 218 387-668 9-252 (256)
84 PRK05674 gamma-carboxygeranoyl 99.7 4.6E-17 9.9E-22 170.7 13.5 162 388-607 14-199 (265)
85 PRK06688 enoyl-CoA hydratase; 99.7 5.7E-17 1.2E-21 169.2 13.9 164 387-607 12-195 (259)
86 PRK07938 enoyl-CoA hydratase; 99.7 6.8E-17 1.5E-21 167.9 14.2 164 387-607 9-190 (249)
87 PRK06143 enoyl-CoA hydratase; 99.7 2.3E-16 5.1E-21 164.5 18.1 167 387-611 14-206 (256)
88 PRK07659 enoyl-CoA hydratase; 99.7 4.7E-17 1E-21 170.1 12.9 164 387-610 13-203 (260)
89 PRK09120 p-hydroxycinnamoyl Co 99.7 1.9E-16 4.2E-21 166.9 17.4 164 387-607 15-203 (275)
90 PLN02888 enoyl-CoA hydratase 99.7 2.7E-16 5.9E-21 164.8 18.2 164 387-607 17-198 (265)
91 PRK08260 enoyl-CoA hydratase; 99.7 2.3E-16 4.9E-21 168.0 17.7 164 387-607 11-212 (296)
92 PRK12478 enoyl-CoA hydratase; 99.7 9.5E-17 2.1E-21 171.0 14.6 165 387-607 12-208 (298)
93 PRK07112 polyketide biosynthes 99.7 9.2E-17 2E-21 167.5 14.0 216 387-669 11-252 (255)
94 PRK07110 polyketide biosynthes 99.7 2.8E-16 6E-21 163.3 17.5 162 387-607 12-193 (249)
95 PRK11423 methylmalonyl-CoA dec 99.7 2.8E-16 6.1E-21 164.4 17.6 162 387-606 11-194 (261)
96 PRK05864 enoyl-CoA hydratase; 99.7 3.2E-16 7E-21 165.2 17.6 168 387-611 17-217 (276)
97 PRK07327 enoyl-CoA hydratase; 99.7 4.4E-16 9.6E-21 163.5 17.6 163 388-607 20-205 (268)
98 PRK08321 naphthoate synthase; 99.7 1.3E-16 2.9E-21 170.2 13.6 166 388-610 33-242 (302)
99 COG0740 ClpP Protease subunit 99.7 4.7E-16 1E-20 153.9 16.3 164 393-600 30-196 (200)
100 COG1024 CaiD Enoyl-CoA hydrata 99.7 4E-16 8.6E-21 162.8 16.4 164 388-608 13-199 (257)
101 PRK08259 enoyl-CoA hydratase; 99.7 5.9E-16 1.3E-20 161.4 17.4 164 387-607 10-192 (254)
102 PRK14512 ATP-dependent Clp pro 99.7 1.1E-15 2.4E-20 153.1 17.5 161 391-595 24-187 (197)
103 PRK00277 clpP ATP-dependent Cl 99.7 8.8E-16 1.9E-20 154.4 16.9 161 391-595 32-195 (200)
104 cd07017 S14_ClpP_2 Caseinolyti 99.7 7.7E-16 1.7E-20 151.2 14.9 157 143-343 11-171 (171)
105 PRK07827 enoyl-CoA hydratase; 99.7 2.5E-16 5.5E-21 164.6 12.2 167 387-611 13-205 (260)
106 PRK08272 enoyl-CoA hydratase; 99.7 1.5E-15 3.3E-20 162.1 17.8 164 387-607 17-223 (302)
107 PF00378 ECH: Enoyl-CoA hydrat 99.7 8.1E-16 1.7E-20 159.2 15.2 167 387-610 5-196 (245)
108 PRK14514 ATP-dependent Clp pro 99.7 1.4E-15 3E-20 154.1 16.4 160 392-595 56-218 (221)
109 PRK08788 enoyl-CoA hydratase; 99.7 2.3E-15 4.9E-20 159.4 17.6 163 387-607 24-220 (287)
110 TIGR00493 clpP ATP-dependent C 99.7 2.2E-15 4.8E-20 150.5 16.4 160 391-594 27-189 (191)
111 cd06558 crotonase-like Crotona 99.7 3.3E-15 7.1E-20 148.7 17.4 163 388-608 7-193 (195)
112 PRK05617 3-hydroxyisobutyryl-C 99.7 9E-16 2E-20 166.4 14.3 158 387-602 10-193 (342)
113 CHL00028 clpP ATP-dependent Cl 99.6 3.8E-15 8.2E-20 149.4 16.9 161 392-595 32-195 (200)
114 PRK08290 enoyl-CoA hydratase; 99.6 4.4E-15 9.5E-20 157.6 17.9 166 387-607 11-215 (288)
115 PRK12551 ATP-dependent Clp pro 99.6 5.2E-15 1.1E-19 147.9 16.2 160 392-595 27-189 (196)
116 PF00574 CLP_protease: Clp pro 99.6 2.9E-15 6.3E-20 148.3 13.2 160 392-595 18-180 (182)
117 PRK11730 fadB multifunctional 99.6 1E-14 2.2E-19 172.3 18.1 164 387-607 14-201 (715)
118 COG1030 NfeD Membrane-bound se 99.6 1.3E-14 2.8E-19 157.5 17.0 173 132-356 19-196 (436)
119 PLN02874 3-hydroxyisobutyryl-C 99.6 1.1E-14 2.4E-19 159.9 16.7 166 387-610 18-206 (379)
120 PRK14513 ATP-dependent Clp pro 99.6 1.9E-14 4E-19 144.2 16.6 161 392-596 29-192 (201)
121 TIGR03200 dearomat_oah 6-oxocy 99.6 1.4E-14 2.9E-19 155.7 16.6 154 389-599 37-215 (360)
122 PRK12553 ATP-dependent Clp pro 99.6 1.7E-14 3.7E-19 145.8 16.4 161 143-345 37-201 (207)
123 PRK06213 enoyl-CoA hydratase; 99.6 3.2E-14 6.9E-19 146.1 17.5 161 387-608 10-192 (229)
124 TIGR02437 FadB fatty oxidation 99.6 3E-14 6.6E-19 168.0 18.3 165 387-608 14-202 (714)
125 PRK14512 ATP-dependent Clp pro 99.6 7.3E-14 1.6E-18 140.1 18.2 164 143-350 25-193 (197)
126 PLN02267 enoyl-CoA hydratase/i 99.6 7.3E-14 1.6E-18 144.4 18.1 163 387-608 7-197 (239)
127 TIGR02440 FadJ fatty oxidation 99.6 3.4E-14 7.5E-19 167.4 17.3 166 387-608 8-198 (699)
128 PLN02157 3-hydroxyisobutyryl-C 99.6 4.3E-14 9.2E-19 155.7 16.8 155 387-599 44-223 (401)
129 PLN02988 3-hydroxyisobutyryl-C 99.6 3.5E-14 7.7E-19 155.7 15.8 165 387-609 16-205 (381)
130 PRK11154 fadJ multifunctional 99.5 9.6E-14 2.1E-18 163.9 18.2 167 387-609 13-204 (708)
131 PRK08184 benzoyl-CoA-dihydrodi 99.5 1.3E-13 2.7E-18 157.5 17.9 175 387-611 22-235 (550)
132 TIGR00493 clpP ATP-dependent C 99.5 1.8E-13 3.9E-18 136.7 16.8 160 142-345 27-190 (191)
133 TIGR03222 benzo_boxC benzoyl-C 99.5 1.4E-13 3E-18 156.7 18.0 172 388-611 19-231 (546)
134 PRK12552 ATP-dependent Clp pro 99.5 1.9E-13 4.1E-18 138.4 16.9 170 392-595 32-213 (222)
135 PRK00277 clpP ATP-dependent Cl 99.5 2.3E-13 5.1E-18 136.9 17.3 159 143-345 33-195 (200)
136 TIGR02441 fa_ox_alpha_mit fatt 99.5 1.5E-13 3.2E-18 162.5 17.0 154 387-596 20-198 (737)
137 CHL00028 clpP ATP-dependent Cl 99.5 4.4E-13 9.6E-18 134.5 16.8 160 143-345 32-195 (200)
138 PF00574 CLP_protease: Clp pro 99.5 1.1E-13 2.4E-18 137.1 12.1 159 143-345 18-180 (182)
139 PRK14514 ATP-dependent Clp pro 99.5 4.1E-13 8.8E-18 136.3 16.2 159 143-345 56-218 (221)
140 PRK12551 ATP-dependent Clp pro 99.5 5.2E-13 1.1E-17 133.6 16.2 160 143-346 27-190 (196)
141 COG1030 NfeD Membrane-bound se 99.5 4.7E-13 1E-17 145.4 15.8 170 386-605 24-198 (436)
142 PLN02851 3-hydroxyisobutyryl-C 99.5 8E-13 1.7E-17 145.6 17.9 155 387-599 49-228 (407)
143 KOG1679 Enoyl-CoA hydratase [L 99.5 1.1E-13 2.3E-18 136.0 9.4 165 385-608 36-228 (291)
144 COG0740 ClpP Protease subunit 99.5 9.8E-13 2.1E-17 130.4 16.3 161 144-348 30-194 (200)
145 COG0447 MenB Dihydroxynaphthoi 99.5 1.6E-13 3.5E-18 135.1 9.6 161 388-608 27-216 (282)
146 PRK14513 ATP-dependent Clp pro 99.4 3.5E-12 7.6E-17 127.9 16.6 159 144-346 30-192 (201)
147 KOG0840 ATP-dependent Clp prot 99.4 7.3E-12 1.6E-16 126.4 14.6 160 392-595 94-256 (275)
148 PRK12552 ATP-dependent Clp pro 99.3 3E-11 6.6E-16 122.4 16.9 168 143-345 32-213 (222)
149 PRK11423 methylmalonyl-CoA dec 99.3 1.2E-11 2.5E-16 129.7 13.6 166 138-357 11-195 (261)
150 PRK05995 enoyl-CoA hydratase; 99.3 1.5E-11 3.2E-16 128.9 14.0 167 137-357 10-197 (262)
151 PRK06190 enoyl-CoA hydratase; 99.3 1.8E-11 4E-16 128.0 13.9 167 138-357 11-193 (258)
152 PLN02600 enoyl-CoA hydratase 99.3 2E-11 4.3E-16 127.1 14.1 166 138-356 2-186 (251)
153 PRK07511 enoyl-CoA hydratase; 99.3 1.9E-11 4.1E-16 127.9 13.9 168 137-357 9-197 (260)
154 PRK09674 enoyl-CoA hydratase-i 99.3 1.7E-11 3.7E-16 128.0 13.4 166 138-356 9-190 (255)
155 PRK06142 enoyl-CoA hydratase; 99.3 1.8E-11 4E-16 128.9 13.8 168 137-357 12-209 (272)
156 PRK06143 enoyl-CoA hydratase; 99.3 1.9E-11 4.2E-16 127.6 13.9 167 137-357 13-198 (256)
157 PRK08138 enoyl-CoA hydratase; 99.3 2.1E-11 4.5E-16 127.8 14.1 166 138-356 15-196 (261)
158 PRK05862 enoyl-CoA hydratase; 99.3 1.9E-11 4.1E-16 127.7 13.5 167 138-357 11-193 (257)
159 PRK05869 enoyl-CoA hydratase; 99.3 2.4E-11 5.3E-16 124.3 13.9 167 137-357 14-198 (222)
160 PRK06688 enoyl-CoA hydratase; 99.3 2.7E-11 5.8E-16 126.6 14.3 168 137-357 11-195 (259)
161 PRK07468 enoyl-CoA hydratase; 99.3 3.1E-11 6.7E-16 126.5 14.6 164 138-355 12-196 (262)
162 TIGR03210 badI 2-ketocyclohexa 99.3 2.7E-11 5.8E-16 126.6 13.9 168 137-357 8-193 (256)
163 PRK09245 enoyl-CoA hydratase; 99.3 3.9E-11 8.4E-16 126.0 14.9 167 138-357 10-202 (266)
164 TIGR02280 PaaB1 phenylacetate 99.3 2.7E-11 6E-16 126.4 13.5 166 138-357 6-192 (256)
165 PLN02888 enoyl-CoA hydratase 99.3 3.5E-11 7.6E-16 126.3 14.3 167 138-357 17-198 (265)
166 PRK08260 enoyl-CoA hydratase; 99.3 3.3E-11 7.1E-16 128.5 14.2 167 138-357 11-212 (296)
167 TIGR01929 menB naphthoate synt 99.3 3.2E-11 7E-16 126.2 13.8 167 138-357 10-196 (259)
168 PRK05674 gamma-carboxygeranoyl 99.3 3E-11 6.5E-16 126.9 13.5 166 138-357 13-199 (265)
169 PLN02664 enoyl-CoA hydratase/d 99.3 2.8E-11 6.1E-16 127.7 13.2 166 137-355 14-209 (275)
170 PRK06127 enoyl-CoA hydratase; 99.3 3.3E-11 7.2E-16 126.8 13.6 167 138-357 18-205 (269)
171 PRK06563 enoyl-CoA hydratase; 99.3 3.7E-11 8.1E-16 125.4 13.8 166 138-356 6-190 (255)
172 PRK06023 enoyl-CoA hydratase; 99.3 4.5E-11 9.7E-16 124.5 14.3 165 140-357 15-196 (251)
173 PRK05980 enoyl-CoA hydratase; 99.3 3.1E-11 6.7E-16 126.3 13.1 168 137-357 9-199 (260)
174 PRK06210 enoyl-CoA hydratase; 99.3 4.6E-11 1E-15 125.8 14.4 167 138-357 12-207 (272)
175 PF00378 ECH: Enoyl-CoA hydrat 99.3 2.7E-11 5.8E-16 125.5 12.4 168 138-357 5-189 (245)
176 PRK07658 enoyl-CoA hydratase; 99.3 3.7E-11 8E-16 125.4 13.3 167 137-357 8-193 (257)
177 PRK08139 enoyl-CoA hydratase; 99.3 5.2E-11 1.1E-15 125.1 14.5 166 138-357 18-202 (266)
178 PRK05809 3-hydroxybutyryl-CoA 99.3 3.7E-11 8E-16 125.7 13.3 168 137-357 10-196 (260)
179 PRK09076 enoyl-CoA hydratase; 99.3 3.9E-11 8.5E-16 125.5 13.4 166 137-356 9-193 (258)
180 KOG1680 Enoyl-CoA hydratase [L 99.3 2.3E-11 5E-16 124.7 11.2 168 137-356 43-225 (290)
181 cd06558 crotonase-like Crotona 99.3 4.4E-11 9.6E-16 119.0 13.1 167 138-357 6-192 (195)
182 PRK06144 enoyl-CoA hydratase; 99.3 4.6E-11 9.9E-16 125.2 13.5 168 137-357 14-202 (262)
183 PRK07657 enoyl-CoA hydratase; 99.3 4.6E-11 9.9E-16 125.1 13.5 167 138-357 11-196 (260)
184 PRK09120 p-hydroxycinnamoyl Co 99.3 4.2E-11 9.2E-16 126.4 13.3 167 138-357 15-203 (275)
185 PRK07110 polyketide biosynthes 99.3 4.5E-11 9.8E-16 124.4 13.3 167 138-357 12-193 (249)
186 PRK07327 enoyl-CoA hydratase; 99.3 6E-11 1.3E-15 124.8 14.3 167 138-357 19-205 (268)
187 KOG1681 Enoyl-CoA isomerase [L 99.3 1E-11 2.2E-16 123.4 7.8 167 385-608 27-228 (292)
188 PRK08150 enoyl-CoA hydratase; 99.3 5.3E-11 1.2E-15 124.3 13.5 165 138-357 9-191 (255)
189 PRK08258 enoyl-CoA hydratase; 99.3 6.1E-11 1.3E-15 125.3 13.9 168 138-357 24-213 (277)
190 PRK05864 enoyl-CoA hydratase; 99.2 7.3E-11 1.6E-15 124.6 14.2 168 138-357 17-209 (276)
191 PRK07396 dihydroxynaphthoic ac 99.2 8E-11 1.7E-15 124.2 14.2 168 137-357 19-206 (273)
192 PRK07260 enoyl-CoA hydratase; 99.2 8.7E-11 1.9E-15 122.6 14.3 167 138-357 9-197 (255)
193 PRK08140 enoyl-CoA hydratase; 99.2 7.7E-11 1.7E-15 123.5 13.8 166 138-357 11-198 (262)
194 PRK05870 enoyl-CoA hydratase; 99.2 6.2E-11 1.3E-15 123.3 12.8 165 137-356 9-191 (249)
195 PRK06494 enoyl-CoA hydratase; 99.2 7.2E-11 1.6E-15 123.5 13.1 167 137-357 10-193 (259)
196 PRK05981 enoyl-CoA hydratase; 99.2 1.1E-10 2.3E-15 122.7 14.2 168 137-357 10-202 (266)
197 PRK03580 carnitinyl-CoA dehydr 99.2 9.1E-11 2E-15 122.9 13.4 167 137-357 9-193 (261)
198 PRK06495 enoyl-CoA hydratase; 99.2 9.2E-11 2E-15 122.6 13.2 164 137-357 10-193 (257)
199 PRK07799 enoyl-CoA hydratase; 99.2 7.5E-11 1.6E-15 123.6 12.2 166 138-356 12-198 (263)
200 PRK07854 enoyl-CoA hydratase; 99.2 9.2E-11 2E-15 121.6 12.6 167 138-358 7-186 (243)
201 PRK08252 enoyl-CoA hydratase; 99.2 1.1E-10 2.3E-15 121.9 12.6 167 137-356 9-189 (254)
202 PF01972 SDH_sah: Serine dehyd 99.2 5.8E-10 1.3E-14 114.9 17.6 167 414-602 76-254 (285)
203 PRK07938 enoyl-CoA hydratase; 99.2 4E-10 8.6E-15 117.3 16.6 164 137-357 8-190 (249)
204 PLN02921 naphthoate synthase 99.2 1.6E-10 3.5E-15 124.7 13.9 167 138-357 74-260 (327)
205 PRK07659 enoyl-CoA hydratase; 99.2 1.3E-10 2.8E-15 121.7 12.7 166 137-357 12-196 (260)
206 PRK08290 enoyl-CoA hydratase; 99.2 1.7E-10 3.6E-15 122.7 13.5 166 137-357 10-215 (288)
207 PLN03214 probable enoyl-CoA hy 99.2 1.6E-10 3.5E-15 122.1 13.0 165 138-356 19-206 (278)
208 PRK12478 enoyl-CoA hydratase; 99.2 2.7E-10 5.8E-15 121.7 14.3 164 137-357 11-208 (298)
209 PRK08272 enoyl-CoA hydratase; 99.2 3.7E-10 8E-15 120.8 15.2 164 138-357 17-223 (302)
210 COG1024 CaiD Enoyl-CoA hydrata 99.2 3.5E-10 7.6E-15 118.2 14.3 166 139-357 13-198 (257)
211 PRK08259 enoyl-CoA hydratase; 99.2 1.9E-10 4.1E-15 120.1 12.2 167 138-357 10-192 (254)
212 PRK07509 enoyl-CoA hydratase; 99.2 2.5E-10 5.4E-15 119.6 12.7 155 138-345 10-189 (262)
213 PRK08788 enoyl-CoA hydratase; 99.2 3.4E-10 7.4E-15 120.1 13.9 166 138-357 24-220 (287)
214 PRK08321 naphthoate synthase; 99.2 3.3E-10 7.1E-15 121.2 13.7 167 138-357 32-235 (302)
215 PRK07827 enoyl-CoA hydratase; 99.1 5.1E-10 1.1E-14 117.2 14.3 155 137-344 12-186 (260)
216 PRK06072 enoyl-CoA hydratase; 99.1 6.9E-10 1.5E-14 115.5 14.6 154 137-343 6-173 (248)
217 TIGR03189 dienoyl_CoA_hyt cycl 99.1 6.1E-10 1.3E-14 116.1 14.0 154 138-346 8-176 (251)
218 PRK05617 3-hydroxyisobutyryl-C 99.1 1.1E-09 2.3E-14 119.3 16.0 167 137-356 9-197 (342)
219 TIGR03200 dearomat_oah 6-oxocy 99.1 5.5E-10 1.2E-14 120.5 12.7 158 140-349 37-215 (360)
220 PRK11730 fadB multifunctional 99.1 8.1E-10 1.8E-14 130.9 14.1 167 138-357 14-201 (715)
221 PF01972 SDH_sah: Serine dehyd 99.1 1.3E-09 2.9E-14 112.2 13.0 169 164-353 77-255 (285)
222 PRK07112 polyketide biosynthes 99.1 1.5E-09 3.3E-14 113.3 13.4 156 137-348 10-185 (255)
223 TIGR02437 FadB fatty oxidation 99.0 1.8E-09 4E-14 127.7 14.1 167 138-357 14-201 (714)
224 PLN02874 3-hydroxyisobutyryl-C 99.0 3.4E-09 7.3E-14 116.8 14.4 165 138-355 18-201 (379)
225 PRK06213 enoyl-CoA hydratase; 99.0 8.7E-09 1.9E-13 105.9 16.3 164 138-357 10-191 (229)
226 PLN02157 3-hydroxyisobutyryl-C 99.0 4.4E-09 9.6E-14 116.2 14.4 159 138-349 44-223 (401)
227 TIGR02440 FadJ fatty oxidation 99.0 3.2E-09 6.9E-14 125.6 13.8 170 137-358 7-198 (699)
228 PLN02988 3-hydroxyisobutyryl-C 99.0 6.9E-09 1.5E-13 114.2 14.5 167 138-357 16-203 (381)
229 PRK11154 fadJ multifunctional 98.9 6.7E-09 1.4E-13 123.1 14.1 168 138-357 13-202 (708)
230 PLN02267 enoyl-CoA hydratase/i 98.9 4.1E-08 9E-13 101.7 17.1 166 137-357 6-196 (239)
231 PLN02851 3-hydroxyisobutyryl-C 98.9 2.4E-08 5.1E-13 110.5 15.1 159 138-349 49-228 (407)
232 KOG1682 Enoyl-CoA isomerase [L 98.9 1E-08 2.2E-13 100.6 10.1 160 388-608 40-224 (287)
233 TIGR02441 fa_ox_alpha_mit fatt 98.8 2.4E-08 5.2E-13 118.7 14.5 157 138-346 20-198 (737)
234 KOG0840 ATP-dependent Clp prot 98.8 3.6E-08 7.7E-13 100.1 13.2 161 143-345 94-256 (275)
235 KOG0016 Enoyl-CoA hydratase/is 98.8 5.8E-08 1.3E-12 99.1 14.2 171 387-611 14-214 (266)
236 COG0447 MenB Dihydroxynaphthoi 98.6 2.1E-07 4.6E-12 92.4 9.8 162 139-357 27-215 (282)
237 PLN02820 3-methylcrotonyl-CoA 98.4 0.00014 3E-09 84.0 28.7 156 414-609 386-553 (569)
238 TIGR01117 mmdA methylmalonyl-C 98.4 0.00043 9.3E-09 79.4 30.0 86 411-498 332-429 (512)
239 KOG1684 Enoyl-CoA hydratase [L 98.3 2.1E-06 4.7E-11 91.2 10.4 152 386-598 44-224 (401)
240 KOG1679 Enoyl-CoA hydratase [L 98.3 1.6E-06 3.4E-11 86.2 7.7 158 137-347 37-213 (291)
241 KOG1681 Enoyl-CoA isomerase [L 98.1 4E-06 8.7E-11 84.1 5.7 165 137-353 28-223 (292)
242 PF01039 Carboxyl_trans: Carbo 98.0 0.0012 2.6E-08 75.6 25.1 268 162-498 76-408 (493)
243 TIGR03133 malonate_beta malona 98.0 0.00019 4.1E-09 75.6 15.4 103 388-496 59-173 (274)
244 KOG1682 Enoyl-CoA isomerase [L 97.9 0.00012 2.5E-09 72.5 11.0 162 139-357 40-223 (287)
245 KOG0016 Enoyl-CoA hydratase/is 97.7 0.0007 1.5E-08 69.7 13.2 146 162-356 35-205 (266)
246 PRK07189 malonate decarboxylas 97.5 0.00071 1.5E-08 72.1 11.7 103 389-497 69-183 (301)
247 PRK12319 acetyl-CoA carboxylas 97.4 0.00074 1.6E-08 70.7 10.1 85 412-498 81-173 (256)
248 CHL00198 accA acetyl-CoA carbo 97.3 0.0013 2.7E-08 70.7 10.8 83 412-496 137-227 (322)
249 PLN03230 acetyl-coenzyme A car 97.3 0.0027 5.9E-08 69.9 13.4 85 412-498 204-296 (431)
250 PRK05654 acetyl-CoA carboxylas 97.3 0.0054 1.2E-07 65.5 15.3 88 409-498 136-232 (292)
251 PLN03229 acetyl-coenzyme A car 97.3 0.0012 2.6E-08 76.8 10.3 85 412-498 225-317 (762)
252 CHL00174 accD acetyl-CoA carbo 97.3 0.0074 1.6E-07 64.2 15.4 88 409-498 148-245 (296)
253 TIGR00515 accD acetyl-CoA carb 97.3 0.008 1.7E-07 63.9 15.6 87 410-498 136-231 (285)
254 TIGR00513 accA acetyl-CoA carb 97.2 0.0018 3.9E-08 69.5 10.2 85 412-498 134-226 (316)
255 PRK05724 acetyl-CoA carboxylas 97.1 0.0024 5.3E-08 68.6 10.4 85 412-498 134-226 (319)
256 COG0777 AccD Acetyl-CoA carbox 97.1 0.0052 1.1E-07 63.9 11.3 131 162-359 141-280 (294)
257 CHL00198 accA acetyl-CoA carbo 97.1 0.013 2.7E-07 63.2 14.7 85 162-248 138-230 (322)
258 PRK12319 acetyl-CoA carboxylas 96.8 0.018 3.9E-07 60.4 13.1 85 162-248 82-174 (256)
259 TIGR03134 malonate_gamma malon 96.7 0.018 3.8E-07 59.8 12.3 84 414-498 49-145 (238)
260 PLN03229 acetyl-coenzyme A car 96.7 0.018 4E-07 67.3 13.6 85 162-248 226-318 (762)
261 TIGR00513 accA acetyl-CoA carb 96.7 0.036 7.8E-07 59.7 14.5 85 162-248 135-227 (316)
262 PF01039 Carboxyl_trans: Carbo 96.7 0.032 7E-07 64.0 15.1 85 409-495 72-166 (493)
263 TIGR00515 accD acetyl-CoA carb 96.6 0.029 6.3E-07 59.7 13.3 131 162-359 139-278 (285)
264 COG4799 Acetyl-CoA carboxylase 96.6 0.22 4.7E-06 56.9 20.8 84 161-248 109-202 (526)
265 PLN03230 acetyl-coenzyme A car 96.6 0.022 4.8E-07 62.9 12.4 85 162-248 205-297 (431)
266 PRK05724 acetyl-CoA carboxylas 96.6 0.024 5.1E-07 61.1 12.3 85 162-248 135-227 (319)
267 PRK05654 acetyl-CoA carboxylas 96.4 0.057 1.2E-06 57.7 13.8 85 162-248 140-233 (292)
268 CHL00174 accD acetyl-CoA carbo 96.3 0.085 1.8E-06 56.3 14.5 131 162-359 152-292 (296)
269 COG0777 AccD Acetyl-CoA carbox 96.2 0.036 7.8E-07 57.8 10.8 108 389-498 109-233 (294)
270 TIGR03133 malonate_beta malona 96.2 0.096 2.1E-06 55.5 14.1 86 162-248 78-176 (274)
271 TIGR03134 malonate_gamma malon 96.1 0.043 9.3E-07 57.0 10.8 84 164-248 50-146 (238)
272 TIGR02717 AcCoA-syn-alpha acet 95.7 0.29 6.4E-06 55.5 16.3 112 137-266 149-273 (447)
273 TIGR01117 mmdA methylmalonyl-C 95.2 0.19 4.2E-06 57.9 12.8 85 162-248 334-430 (512)
274 PRK07189 malonate decarboxylas 95.1 0.11 2.5E-06 55.6 9.8 86 162-248 87-185 (301)
275 COG0825 AccA Acetyl-CoA carbox 94.6 0.042 9.2E-07 57.7 4.7 79 414-494 135-221 (317)
276 PLN02820 3-methylcrotonyl-CoA 94.3 0.33 7.1E-06 56.6 11.7 85 409-495 144-240 (569)
277 COG0825 AccA Acetyl-CoA carbox 93.9 0.12 2.5E-06 54.5 6.3 84 161-246 133-224 (317)
278 KOG1684 Enoyl-CoA hydratase [L 93.4 0.82 1.8E-05 49.7 11.6 167 138-358 45-233 (401)
279 PF00549 Ligase_CoA: CoA-ligas 91.6 0.22 4.8E-06 48.3 4.3 71 413-483 56-135 (153)
280 COG4799 Acetyl-CoA carboxylase 91.5 0.7 1.5E-05 53.0 8.8 81 410-492 107-194 (526)
281 PF13607 Succ_CoA_lig: Succiny 90.4 0.59 1.3E-05 44.6 5.9 55 417-475 41-95 (138)
282 COG3904 Predicted periplasmic 89.0 7.6 0.00017 39.4 12.5 93 387-495 73-166 (245)
283 PF06833 MdcE: Malonate decarb 88.1 3.8 8.2E-05 42.4 10.1 76 418-493 51-138 (234)
284 COG0074 SucD Succinyl-CoA synt 88.0 0.62 1.3E-05 49.2 4.4 84 387-473 145-240 (293)
285 COG0074 SucD Succinyl-CoA synt 87.8 1 2.3E-05 47.6 5.9 86 132-221 139-238 (293)
286 PF13607 Succ_CoA_lig: Succiny 87.2 1.2 2.6E-05 42.5 5.5 83 166-266 41-124 (138)
287 cd06567 Peptidase_S41 C-termin 86.8 13 0.00027 37.8 13.3 81 390-483 61-166 (224)
288 COG3904 Predicted periplasmic 86.6 4.2 9E-05 41.2 9.0 97 138-248 73-170 (245)
289 PF06833 MdcE: Malonate decarb 86.1 4.2 9.1E-05 42.1 9.1 121 167-345 51-186 (234)
290 PF00549 Ligase_CoA: CoA-ligas 85.3 1.6 3.5E-05 42.4 5.4 56 164-219 58-116 (153)
291 PF01740 STAS: STAS domain; I 85.3 3.3 7.2E-05 37.4 7.3 71 137-216 6-85 (117)
292 KOG1683 Hydroxyacyl-CoA dehydr 83.5 0.8 1.7E-05 50.0 2.7 142 414-602 83-248 (380)
293 cd07563 Peptidase_S41_IRBP Int 81.6 13 0.00028 38.7 10.8 117 337-484 32-180 (250)
294 PF08496 Peptidase_S49_N: Pept 80.6 1.6 3.4E-05 42.5 3.3 51 386-447 96-147 (155)
295 cd07041 STAS_RsbR_RsbS_like Su 80.4 7.9 0.00017 34.5 7.7 69 139-216 9-78 (109)
296 cd07562 Peptidase_S41_TRI Tric 80.0 12 0.00026 39.3 10.0 159 296-484 4-186 (266)
297 cd06844 STAS Sulphate Transpor 79.7 14 0.0003 32.5 8.9 71 138-217 6-77 (100)
298 TIGR02886 spore_II_AA anti-sig 79.5 8.9 0.00019 34.0 7.7 69 138-215 6-75 (106)
299 PTZ00187 succinyl-CoA syntheta 79.4 3.5 7.7E-05 44.7 5.9 53 417-473 211-264 (317)
300 cd07043 STAS_anti-anti-sigma_f 78.5 12 0.00027 32.0 8.2 68 138-215 6-74 (99)
301 TIGR00377 ant_ant_sig anti-ant 77.9 13 0.00028 32.8 8.3 72 137-217 9-81 (108)
302 PLN02522 ATP citrate (pro-S)-l 76.2 4.9 0.00011 47.3 6.2 54 417-473 209-262 (608)
303 PLN00125 Succinyl-CoA ligase [ 75.5 4.1 8.9E-05 43.9 5.0 54 417-473 192-245 (300)
304 PF02601 Exonuc_VII_L: Exonucl 74.7 5.8 0.00013 42.8 6.0 70 414-493 56-137 (319)
305 COG0793 Prc Periplasmic protea 74.1 12 0.00027 42.0 8.5 69 162-231 216-308 (406)
306 KOG1255 Succinyl-CoA synthetas 72.5 8.3 0.00018 40.0 6.0 84 387-473 176-274 (329)
307 PLN00125 Succinyl-CoA ligase [ 72.4 5.8 0.00012 42.8 5.2 80 137-220 149-242 (300)
308 COG0793 Prc Periplasmic protea 72.0 18 0.0004 40.7 9.2 99 387-498 202-329 (406)
309 PTZ00187 succinyl-CoA syntheta 71.8 7.2 0.00016 42.4 5.8 85 132-220 163-261 (317)
310 PLN00049 carboxyl-terminal pro 71.6 23 0.0005 39.6 9.9 84 387-483 193-301 (389)
311 TIGR01019 sucCoAalpha succinyl 70.8 7 0.00015 41.9 5.4 79 137-220 142-234 (286)
312 cd07042 STAS_SulP_like_sulfate 70.7 32 0.00069 29.9 8.9 72 137-217 6-79 (107)
313 KOG1683 Hydroxyacyl-CoA dehydr 70.7 3.8 8.1E-05 45.0 3.3 150 164-363 84-257 (380)
314 PF03572 Peptidase_S41: Peptid 70.6 18 0.00039 34.5 7.8 70 413-483 15-112 (169)
315 cd07561 Peptidase_S41_CPP_like 69.6 29 0.00063 36.5 9.6 84 387-483 63-182 (256)
316 TIGR02717 AcCoA-syn-alpha acet 68.6 9.5 0.0002 43.4 6.2 55 417-475 190-244 (447)
317 PF13552 DUF4127: Protein of u 68.4 1.7E+02 0.0036 34.0 16.2 248 162-466 43-350 (497)
318 cd07560 Peptidase_S41_CPP C-te 67.6 30 0.00066 35.2 9.0 81 390-483 50-153 (211)
319 TIGR00225 prc C-terminal pepti 67.5 30 0.00064 37.7 9.5 84 387-483 150-256 (334)
320 PRK05678 succinyl-CoA syntheta 67.1 9.1 0.0002 41.1 5.3 79 137-220 144-236 (291)
321 TIGR00237 xseA exodeoxyribonuc 65.7 10 0.00022 43.0 5.6 70 414-493 171-249 (432)
322 PLN00124 succinyl-CoA ligase [ 64.7 29 0.00062 39.3 8.9 70 410-482 325-398 (422)
323 TIGR01019 sucCoAalpha succinyl 63.8 12 0.00026 40.1 5.4 53 417-473 185-237 (286)
324 COG0045 SucC Succinyl-CoA synt 63.8 31 0.00067 38.3 8.6 72 410-484 289-364 (387)
325 COG1570 XseA Exonuclease VII, 62.4 13 0.00027 42.1 5.4 69 415-492 178-254 (440)
326 PRK05678 succinyl-CoA syntheta 61.2 15 0.00033 39.5 5.6 53 417-473 187-239 (291)
327 PRK11186 carboxy-terminal prot 59.3 47 0.001 39.9 9.7 91 388-491 353-472 (667)
328 PRK06091 membrane protein FdrA 58.2 15 0.00032 42.9 5.1 80 137-221 192-289 (555)
329 PF08496 Peptidase_S49_N: Pept 57.4 12 0.00026 36.5 3.7 49 137-194 96-145 (155)
330 PLN02522 ATP citrate (pro-S)-l 57.2 19 0.00041 42.6 5.9 79 137-220 166-259 (608)
331 KOG1255 Succinyl-CoA synthetas 57.0 52 0.0011 34.3 8.2 117 132-266 170-308 (329)
332 PRK00286 xseA exodeoxyribonucl 55.9 18 0.00038 41.0 5.4 69 414-493 177-254 (438)
333 TIGR01016 sucCoAbeta succinyl- 55.6 39 0.00084 37.6 7.9 63 413-478 293-359 (386)
334 PRK14046 malate--CoA ligase su 55.6 48 0.001 37.1 8.6 66 413-481 293-362 (392)
335 PF12683 DUF3798: Protein of u 55.1 33 0.00072 36.3 6.7 67 164-238 47-113 (275)
336 cd06567 Peptidase_S41 C-termin 54.8 59 0.0013 32.9 8.5 79 141-230 61-164 (224)
337 PRK06091 membrane protein FdrA 54.5 22 0.00048 41.4 5.8 55 417-475 239-293 (555)
338 COG0528 PyrH Uridylate kinase 54.2 34 0.00074 35.6 6.5 102 178-282 3-114 (238)
339 PF01740 STAS: STAS domain; I 51.5 77 0.0017 28.3 7.9 67 387-464 7-83 (117)
340 smart00245 TSPc tail specific 50.5 1.1E+02 0.0023 30.5 9.4 83 388-483 28-134 (192)
341 CHL00073 chlN photochlorophyll 49.6 1.1E+02 0.0025 35.0 10.5 193 415-609 82-336 (457)
342 KOG1447 GTP-specific succinyl- 49.5 59 0.0013 34.4 7.4 64 410-475 316-382 (412)
343 PLN02235 ATP citrate (pro-S)-l 49.2 77 0.0017 35.9 8.8 81 410-492 305-406 (423)
344 PLN00049 carboxyl-terminal pro 48.3 82 0.0018 35.2 9.0 41 163-204 208-249 (389)
345 COG1366 SpoIIAA Anti-anti-sigm 47.9 1.1E+02 0.0024 27.7 8.3 66 141-215 14-80 (117)
346 PF12683 DUF3798: Protein of u 47.8 86 0.0019 33.3 8.4 68 415-490 47-114 (275)
347 COG1042 Acyl-CoA synthetase (N 45.4 2.8E+02 0.0061 33.0 13.1 219 166-470 194-416 (598)
348 PF13090 PP_kinase_C: Polyphos 45.0 46 0.00099 36.6 6.0 53 163-219 19-71 (352)
349 TIGR00225 prc C-terminal pepti 44.0 1.1E+02 0.0024 33.3 9.0 68 163-231 165-255 (334)
350 cd01886 EF-G Elongation factor 43.4 3.6E+02 0.0078 28.4 12.6 36 181-219 89-124 (270)
351 cd07041 STAS_RsbR_RsbS_like Su 41.7 1.1E+02 0.0023 27.1 7.2 60 388-458 9-69 (109)
352 cd06844 STAS Sulphate Transpor 40.7 1.6E+02 0.0036 25.6 8.1 67 388-465 7-75 (100)
353 TIGR01016 sucCoAbeta succinyl- 40.6 69 0.0015 35.6 6.9 56 161-219 292-350 (386)
354 PRK14046 malate--CoA ligase su 39.9 68 0.0015 36.0 6.7 55 161-218 292-349 (392)
355 cd01972 Nitrogenase_VnfE_like 39.2 2.6E+02 0.0057 31.5 11.4 107 164-272 74-201 (426)
356 PF03709 OKR_DC_1_N: Orn/Lys/A 38.6 57 0.0012 29.8 4.9 48 420-469 28-75 (115)
357 PF13466 STAS_2: STAS domain 37.8 1.5E+02 0.0033 24.4 7.2 62 144-216 1-63 (80)
358 TIGR03705 poly_P_kin polyphosp 37.0 67 0.0015 38.6 6.4 54 162-219 339-392 (672)
359 PRK00696 sucC succinyl-CoA syn 36.9 84 0.0018 35.0 6.9 54 162-218 293-349 (388)
360 cd07043 STAS_anti-anti-sigma_f 36.7 2.1E+02 0.0046 24.1 8.1 65 388-464 7-73 (99)
361 COG0167 PyrD Dihydroorotate de 36.5 1.1E+02 0.0024 33.2 7.4 79 415-496 111-200 (310)
362 PF04273 DUF442: Putative phos 36.3 63 0.0014 29.6 4.8 55 171-228 49-104 (110)
363 cd07560 Peptidase_S41_CPP C-te 36.3 1.1E+02 0.0023 31.2 6.9 86 132-229 42-150 (211)
364 TIGR02814 pfaD_fam PfaD family 36.1 3.6E+02 0.0078 30.9 11.6 104 211-322 224-363 (444)
365 PRK11186 carboxy-terminal prot 36.1 2E+02 0.0043 34.7 10.1 42 163-205 367-409 (667)
366 PRK00696 sucC succinyl-CoA syn 35.0 94 0.002 34.6 6.9 55 413-470 293-351 (388)
367 PF03709 OKR_DC_1_N: Orn/Lys/A 34.8 62 0.0014 29.5 4.5 49 168-219 27-75 (115)
368 PLN02235 ATP citrate (pro-S)-l 34.0 80 0.0017 35.8 6.0 61 159-219 305-377 (423)
369 PF03572 Peptidase_S41: Peptid 33.5 70 0.0015 30.4 4.9 67 164-231 17-111 (169)
370 TIGR00377 ant_ant_sig anti-ant 33.4 2.3E+02 0.0051 24.6 8.0 41 388-439 11-51 (108)
371 COG0045 SucC Succinyl-CoA synt 33.2 1.2E+02 0.0025 33.9 6.9 58 160-219 290-349 (387)
372 PRK05443 polyphosphate kinase; 33.1 82 0.0018 38.0 6.3 75 162-240 348-431 (691)
373 cd01972 Nitrogenase_VnfE_like 32.8 1.7E+02 0.0038 32.9 8.6 107 415-523 74-201 (426)
374 cd07561 Peptidase_S41_CPP_like 32.5 1.4E+02 0.0029 31.5 7.2 58 137-205 62-120 (256)
375 PLN00124 succinyl-CoA ligase [ 31.9 1.2E+02 0.0025 34.5 6.9 56 160-219 326-385 (422)
376 cd07562 Peptidase_S41_TRI Tric 31.7 2.3E+02 0.0049 29.7 8.8 82 137-232 85-185 (266)
377 TIGR02886 spore_II_AA anti-sig 30.6 2.9E+02 0.0063 24.1 8.1 41 388-439 7-47 (106)
378 PRK02929 L-arabinose isomerase 29.4 2.3E+02 0.005 33.0 8.9 50 163-219 56-105 (499)
379 TIGR02826 RNR_activ_nrdG3 anae 28.9 2.6E+02 0.0057 26.8 7.9 72 161-239 45-117 (147)
380 PRK14042 pyruvate carboxylase 28.9 5E+02 0.011 30.9 11.7 168 162-358 151-332 (596)
381 PRK14556 pyrH uridylate kinase 28.5 1.1E+02 0.0023 32.3 5.5 99 180-282 15-125 (249)
382 TIGR00815 sulP high affinity s 27.1 2.6E+02 0.0056 32.9 9.0 67 140-215 455-530 (563)
383 PRK00766 hypothetical protein; 26.2 1.8E+02 0.0038 29.5 6.4 62 415-481 56-118 (194)
384 TIGR01284 alt_nitrog_alph nitr 26.1 1.6E+02 0.0035 33.6 6.9 151 415-567 109-299 (457)
385 PF03537 Glyco_hydro_114: Glyc 26.1 1.1E+02 0.0024 25.8 4.2 34 177-219 24-57 (74)
386 PRK11267 biopolymer transport 26.0 5.6E+02 0.012 24.1 11.4 107 104-219 12-134 (141)
387 COG0763 LpxB Lipid A disacchar 25.8 2.7E+02 0.0058 31.2 8.2 64 183-266 88-158 (381)
388 PLN02727 NAD kinase 25.5 2.4E+02 0.0051 35.2 8.3 62 168-231 299-362 (986)
389 PF01990 ATP-synt_F: ATP synth 25.4 1.7E+02 0.0037 25.7 5.5 53 414-473 26-80 (95)
390 COG3033 TnaA Tryptophanase [Am 25.3 2.2E+02 0.0048 31.7 7.3 71 157-228 164-236 (471)
391 PF02684 LpxB: Lipid-A-disacch 24.8 2.8E+02 0.006 31.0 8.3 72 177-269 80-158 (373)
392 KOG1447 GTP-specific succinyl- 24.2 3.1E+02 0.0066 29.3 7.7 58 159-219 316-376 (412)
393 cd01971 Nitrogenase_VnfN_like 24.1 1.9E+02 0.0041 32.7 7.0 104 164-269 71-192 (427)
394 smart00245 TSPc tail specific 23.9 2.7E+02 0.0059 27.6 7.3 42 163-205 42-84 (192)
395 PF00456 Transketolase_N: Tran 23.8 5.7E+02 0.012 28.0 10.3 96 197-318 218-318 (332)
396 TIGR01088 aroQ 3-dehydroquinat 23.5 1.3E+02 0.0028 28.9 4.6 42 166-215 54-95 (141)
397 COG1797 CobB Cobyrinic acid a, 23.0 3.1E+02 0.0066 31.3 8.0 90 164-265 260-370 (451)
398 CHL00073 chlN photochlorophyll 23.0 2.3E+02 0.0051 32.5 7.3 104 163-268 81-223 (457)
399 PRK14476 nitrogenase molybdenu 22.8 2.8E+02 0.0061 31.7 8.0 104 164-269 77-201 (455)
400 PRK05395 3-dehydroquinate dehy 22.7 1.4E+02 0.0031 28.8 4.7 42 166-215 56-97 (146)
401 PRK11660 putative transporter; 22.7 3.1E+02 0.0067 32.2 8.6 66 138-215 460-526 (568)
402 COG4555 NatA ABC-type Na+ tran 22.3 4.9E+02 0.011 27.0 8.5 78 162-245 136-213 (245)
403 PF01220 DHquinase_II: Dehydro 21.8 1.3E+02 0.0028 29.0 4.2 44 416-466 54-97 (140)
404 COG1707 ACT domain-containing 21.6 2.9E+02 0.0062 27.4 6.5 67 162-239 124-191 (218)
405 COG1120 FepC ABC-type cobalami 21.6 8.4E+02 0.018 25.9 10.6 94 172-273 151-247 (258)
406 COG0047 PurL Phosphoribosylfor 21.6 4.3E+02 0.0094 27.5 8.2 71 139-221 3-91 (231)
407 smart00250 PLEC Plectin repeat 21.4 70 0.0015 23.3 1.9 19 575-593 18-36 (38)
408 COG1366 SpoIIAA Anti-anti-sigm 21.4 3E+02 0.0065 24.8 6.6 39 389-438 13-51 (117)
409 TIGR03811 tyr_de_CO2_Ent tyros 21.2 3.9E+02 0.0084 31.9 8.9 87 137-234 245-333 (608)
410 cd01976 Nitrogenase_MoFe_alpha 20.2 8.6E+02 0.019 27.4 11.2 172 163-336 82-292 (421)
411 KOG4230 C1-tetrahydrofolate sy 20.2 2.7E+02 0.0058 32.9 6.9 58 419-478 353-425 (935)
No 1
>PRK10949 protease 4; Provisional
Probab=100.00 E-value=7.5e-95 Score=826.88 Aligned_cols=487 Identities=27% Similarity=0.420 Sum_probs=444.6
Q ss_pred ccccCCeEEEEEEceeecccccc--cc----------C----CCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCC-CHHH
Q 005581 134 ERVRKGSVLTMKLRGQIADQLKS--RF----------S----SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSC-GWGK 196 (690)
Q Consensus 134 ~~~~~~~VlvI~l~G~I~~~~~~--~~----------~----~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg-~~~~ 196 (690)
..+++++|++|+++|+|+|+... ++ . ..+++.+++++|++|++||+|+||+|++|++|| ++++
T Consensus 51 ~~~~~~~vL~ldl~G~lve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~ 130 (618)
T PRK10949 51 PETASRGALLLDISGVIVDKPSSSNKLSQLGRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPS 130 (618)
T ss_pred ccCCCCeEEEEECCCcccCCCCCCCcHHHHhhhhcccCCCccccccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHH
Confidence 45789999999999999997652 11 0 137889999999999999999999999999966 5788
Q ss_pred HHHHHHHHHHHhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 197 VEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 197 ~~eI~~aI~~~r~sgKpVvAy~~~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
++||+++|++||++|||||||.+.+++++|||||+||+||++|.+.++++|+..+.+||+++|||+||+++++++|+||+
T Consensus 131 ~~eI~~ai~~fk~sGKpVvA~~~~~~s~~YyLASaAD~I~l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKs 210 (618)
T PRK10949 131 MQYIGKALREFRDSGKPVYAVGDSYSQGQYYLASFANKIYLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKS 210 (618)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCccchhhhhhhhCCEEEECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhc--------CcccHHHHHhcCCeeEecchhH
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIND--------GVYKVERLKEEGFITNVLYDDE 348 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~--------~v~~a~eAl~~GLID~i~~~de 348 (690)
+++||+|++||+++||+++.+++++|++|++.|+++|+++++++...+++ ..+++++|++.||||++++.+|
T Consensus 211 A~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~de 290 (618)
T PRK10949 211 AVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSAE 290 (618)
T ss_pred CCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHHH
Confidence 99999999999999999999999999999999999999999999654443 3579999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CCCCcccccccccccccccccCCCCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHh
Q 005581 349 VISMLKERLGVQKD-KNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRE 427 (690)
Q Consensus 349 ~~~~l~~~~g~~~~-~~~~~v~~~~y~~~~~~~~~~~~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~ 427 (690)
+.+.+++.+|.+++ +.++.|++.+|..... ...+++||||+++|+|.++.+. .+.++.+.+.+.|++|.+
T Consensus 291 ~~~~l~~~~g~~~~~~~~~~v~~~~y~~~~~-----~~~~~~Iavi~~~G~I~~g~~~----~g~~~~~~~~~~l~~a~~ 361 (618)
T PRK10949 291 IEKALTKAFGWSKTDKNYRAISIYDYALKTP-----ADTGGSIAVIFANGAIMDGEET----PGNVGGDTTAAQIRDARL 361 (618)
T ss_pred HHHHHHHHhCCCccCCccceeeHHHhhcccc-----CCCCCeEEEEEEEEEEcCCCCc----CCCcCHHHHHHHHHHHHh
Confidence 99999999997544 4688999999965221 2346899999999999986532 234567899999999999
Q ss_pred CCCceEEEEEccCCCcchhhhhHHHHHHHHhc-CCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccch
Q 005581 428 SKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNL 506 (690)
Q Consensus 428 D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~-~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~ 506 (690)
|++|||||||||||||++.+++.|+++|++++ ++|||||+|+++||||||||||+||+|||+|+|+||||||++.++++
T Consensus 362 D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~ 441 (618)
T PRK10949 362 DPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTV 441 (618)
T ss_pred CCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCH
Confidence 99999999999999999999999999999885 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHH
Q 005581 507 GKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAAS 586 (690)
Q Consensus 507 ~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e 586 (690)
+++++|+||+.+.+++++++++ ++.++++|++++.+|..+++.|++|++.|+++|+++.++++++++||+|+|++|++
T Consensus 442 ~~ll~klGV~~~~~~~~~~~~~--~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~ 519 (618)
T PRK10949 442 ENSLDSIGVHTDGVSTSPLADV--SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKA 519 (618)
T ss_pred HHHHHhcCCceeEEeccccCCc--cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHH
Confidence 9999999999999999999985 68999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccChHHHHHHHHHHcCCCCCCceEEEEecCCCCCHHHHHhcc
Q 005581 587 RGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSV 634 (690)
Q Consensus 587 ~GLVD~ig~~~~ai~~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~ 634 (690)
+||||++|++++|++.|++++++++ +.++.|++++..+..++.+.
T Consensus 520 ~GLVD~lG~~~~ai~~a~~~a~~~~---~~v~~~~~~~~~~~~l~~~~ 564 (618)
T PRK10949 520 NGLVDSLGDFDDAVAKAAELAKLKQ---WHLNWYVDEPTFFDMVMDQM 564 (618)
T ss_pred cCCCccCCCHHHHHHHHHHHcCCCC---ceEEEecCCCCHHHHHHHHH
Confidence 9999999999999999999999974 67788887766666665543
No 2
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=100.00 E-value=2e-92 Score=807.62 Aligned_cols=492 Identities=29% Similarity=0.433 Sum_probs=451.4
Q ss_pred ccccccCCeEEEEEEce-eecccccc-c----cC-----CCCCHHHHHHHHHHhhcCCCceEEEEEcCC-CCCCHHHHHH
Q 005581 132 PWERVRKGSVLTMKLRG-QIADQLKS-R----FS-----SGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEE 199 (690)
Q Consensus 132 p~~~~~~~~VlvI~l~G-~I~~~~~~-~----~~-----~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-~Gg~~~~~~e 199 (690)
+...+++++|++|+++| .|+|+... . +. ..+++.+++++|++|++||+|+||+|++|+ +||++++++|
T Consensus 35 ~~~~~~~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~e 114 (584)
T TIGR00705 35 PSQKLVSSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVE 114 (584)
T ss_pred CCcCCCCCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHH
Confidence 44557899999999995 99998763 2 11 147899999999999999999999999997 5778999999
Q ss_pred HHHHHHHHhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581 200 IRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e 279 (690)
|+++|++||++|||||||++.+++++|||||+||+|||+|.+.+|++|+.++.+||+++|+|+||+++++++|+||++++
T Consensus 115 i~~ai~~fk~sgKpVvA~~~~~~s~~YylAs~AD~I~~~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~e 194 (584)
T TIGR00705 115 IGSALSEFKDSGKPVYAYGTNYSQGQYYLASFADEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVE 194 (584)
T ss_pred HHHHHHHHHhcCCeEEEEEccccchhhhhhhhCCEEEECCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcc--------cHHHHHhcCCeeEecchhHHHH
Q 005581 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVY--------KVERLKEEGFITNVLYDDEVIS 351 (690)
Q Consensus 280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~--------~a~eAl~~GLID~i~~~de~~~ 351 (690)
||++++||+++||+++.+++++|++|++.|+++|+++++++++++++.++ ++++|++.||||++++.+|+.+
T Consensus 195 pf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~de~~~ 274 (584)
T TIGR00705 195 PFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAEAGK 274 (584)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999888765 8999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCcccccccccccccccccCCCCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCc
Q 005581 352 MLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRY 431 (690)
Q Consensus 352 ~l~~~~g~~~~~~~~~v~~~~y~~~~~~~~~~~~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~V 431 (690)
.+++.+|.+++++++.|++.+|....++. ...+++||||+++|+|.++.+. .+.++.+.+.+.|+++++|++|
T Consensus 275 ~l~~~~g~~~~~~~~~v~~~~y~~~~~~~---~~~~~~vavI~~~G~I~~~~~~----~~~~~~~~~~~~l~~a~~D~~V 347 (584)
T TIGR00705 275 ALKFLFEDDYDKAKNFISLDDYNRDRPQR---HDVQDKIGIVHLEGPIADGRDT----EGNTGGDTVAALLRVARSDPDI 347 (584)
T ss_pred HHHHHhCCCccCCcceeeHHHhhhhcccc---cCCCCeEEEEEEEEEEcCCCCc----ccccCHHHHHHHHHHHhhCCCc
Confidence 99999998765678999999997654331 2346899999999999975432 2345678999999999999999
Q ss_pred eEEEEEccCCCcchhhhhHHHHHHHHhcC-CCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHH
Q 005581 432 KAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLY 510 (690)
Q Consensus 432 kaVVLrinSpGG~~~as~~i~~~I~~l~~-~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~ 510 (690)
|+||||||||||++++++.|+++|+.+++ +|||||+|+|+|+||||||||+||+|||+|+|+||||||++..+++++++
T Consensus 348 kaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l 427 (584)
T TIGR00705 348 KAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSL 427 (584)
T ss_pred eEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHH
Confidence 99999999999999999999999998855 69999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCc
Q 005581 511 EKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLV 590 (690)
Q Consensus 511 ~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLV 590 (690)
+|+||+.+.+++|+++++ ++.+|+|+++++.++..++++|++|++.|+++|+++.++++.+++||+|+|+||+++|||
T Consensus 428 ~klGi~~~~~~t~~~~~~--s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLV 505 (584)
T TIGR00705 428 DRIGVHVDGVSTHELANV--SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLV 505 (584)
T ss_pred HhcCCceEEEeccCcCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCc
Confidence 999999999999999986 789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHHHcCCCCCCceEEEEecCCCCCHHHHHhcc
Q 005581 591 DALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSV 634 (690)
Q Consensus 591 D~ig~~~~ai~~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~ 634 (690)
|++|++++|++.|+++++++++ +.+..+++++.++..++.+.
T Consensus 506 D~ig~~~~Ai~~a~~la~~~~~--~~v~~~~~~~~~~~~~~~~~ 547 (584)
T TIGR00705 506 DALGGLDEAVAKAAKLAHCREQ--WSVEVYKDSATLGSELLQNL 547 (584)
T ss_pred ccCCCHHHHHHHHHHHcCCCCC--ceEEEeCCCCCHHHHHHHHH
Confidence 9999999999999999999433 67788888776666666543
No 3
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=100.00 E-value=3.2e-44 Score=366.00 Aligned_cols=213 Identities=38% Similarity=0.604 Sum_probs=203.8
Q ss_pred EEEEEceeeccccccc--------cCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCe
Q 005581 142 LTMKLRGQIADQLKSR--------FSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKF 213 (690)
Q Consensus 142 lvI~l~G~I~~~~~~~--------~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKp 213 (690)
++|+++|.|.++.... ..+..++.++++.|++|++||+|++|+|++|+|||+++++++|+++|++||+++||
T Consensus 1 l~i~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kp 80 (222)
T cd07018 1 LVLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKP 80 (222)
T ss_pred CEEcCCCcccccCCCCChhhhccCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCe
Confidence 4789999999876532 12468899999999999999999999999999999999999999999999989999
Q ss_pred EEEEecCcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHH
Q 005581 214 IIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEM 293 (690)
Q Consensus 214 VvAy~~~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~ 293 (690)
||||++.++++||||||+||+|||+|++.+|++|+.++.+||+++|+|+||+++++++|+||++++||++++||+++|++
T Consensus 81 Via~~~~~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~ 160 (222)
T cd07018 81 VIAYADGYSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQ 160 (222)
T ss_pred EEEEeCCCCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHH
Q 005581 294 LTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (690)
Q Consensus 294 ~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~ 354 (690)
++++++++|++|++.|+++|+++.+.++++.++++|++++|++.||||++++.||+++.++
T Consensus 161 ~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~l~ 221 (222)
T cd07018 161 TQALLDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEARLK 221 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998875
No 4
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.4e-44 Score=382.37 Aligned_cols=217 Identities=41% Similarity=0.689 Sum_probs=207.4
Q ss_pred cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEE
Q 005581 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASM 468 (690)
Q Consensus 389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v 468 (690)
+||||+++|+|..+..+.. .++.+.+.+.|+++..|+++|+|+|+||||||++.+++.|+++|++++++|||+++|
T Consensus 60 ~Iavi~~~G~I~~~~~~~~----~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v 135 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLR----FIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSV 135 (317)
T ss_pred EEEEEEeeeeeecCCCccc----cccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEE
Confidence 8999999999997653322 567899999999999999999999999999999999999999999998777999999
Q ss_pred CccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581 469 SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA 548 (690)
Q Consensus 469 ~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i 548 (690)
+++||||||||||+||+|||+|+|++|||||+.+.+++.++++|+||+.+.+++|.+|+++ ++++++++++++.+|+.+
T Consensus 136 ~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~-~~~~~~t~e~~~~~q~~~ 214 (317)
T COG0616 136 GGYAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDIL-SPFRPLTEEEREILQKEI 214 (317)
T ss_pred CCeecchhhhhhccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeecccccccc-CcccCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHcCCC
Q 005581 549 QNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIP 610 (690)
Q Consensus 549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a~l~ 610 (690)
++.|+.|++.|+++|+++.+++..+++||+|+|++|+++||||++|++++++..+++.++..
T Consensus 215 ~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~~~~~ 276 (317)
T COG0616 215 DETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAGVK 276 (317)
T ss_pred HHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999998743
No 5
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=100.00 E-value=1e-41 Score=344.11 Aligned_cols=206 Identities=22% Similarity=0.375 Sum_probs=197.8
Q ss_pred eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
.|++|+|+|+|. .+.+++.+.|+++.+|++|++|+|+++++||++.++++|+++|.+++ ++||||||++
T Consensus 1 ~v~vi~i~g~i~----------~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~-~~kpvia~v~ 69 (207)
T TIGR00706 1 TIAILPVSGAIA----------VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLK-AKKPVVASMG 69 (207)
T ss_pred CEEEEEEEEEEe----------cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 489999999997 35789999999999999999999999999999999999999999998 6999999998
Q ss_pred -CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHH
Q 005581 220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (690)
Q Consensus 220 -~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~l 298 (690)
.|+|+|||||++||+|||+|++.+|++|+.++.+||+++|+|+||+++++++|+||++++|| +++|+++|+++++++
T Consensus 70 g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~--~~~s~~~~e~~~~~l 147 (207)
T TIGR00706 70 GVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT--RELTPEERDILQNLV 147 (207)
T ss_pred CccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC--CCCCHHHHHHHHHHH
Confidence 57799999999999999999999999999999999999999999999999999999999999 589999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhC
Q 005581 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (690)
Q Consensus 299 d~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g 358 (690)
+++|++|++.|+++|+++.+++++++++++|++++|+++||||++++.|++++.+++..|
T Consensus 148 ~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~~~~ 207 (207)
T TIGR00706 148 NESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDALKWLAELSG 207 (207)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999987654
No 6
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=100.00 E-value=5.3e-41 Score=340.55 Aligned_cols=210 Identities=21% Similarity=0.285 Sum_probs=198.9
Q ss_pred eEEEEEEceeecccccc--ccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEE
Q 005581 140 SVLTMKLRGQIADQLKS--RFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGY 217 (690)
Q Consensus 140 ~VlvI~l~G~I~~~~~~--~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy 217 (690)
+|++|+++|+|.++... .+.+..++.++.++|+++++||+|++|+|+++++||++.+.++|+++|+++++ +||||||
T Consensus 1 ~v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~-~KpViA~ 79 (214)
T cd07022 1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARA-GKPIVAF 79 (214)
T ss_pred CEEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhc-CCCEEEE
Confidence 58999999999987552 23455789999999999999999999999999999999999999999999988 9999999
Q ss_pred ec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHH
Q 005581 218 VP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296 (690)
Q Consensus 218 ~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~ 296 (690)
++ .|+++||+||++||+|||+|++.+|++|+.++.+|++++|+|+||+++++++|+||++++||. +||+++||++++
T Consensus 80 v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~--~~s~~~re~~~~ 157 (214)
T cd07022 80 VNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDE--PLSDEARARLQA 157 (214)
T ss_pred ECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCC--CCCHHHHHHHHH
Confidence 99 689999999999999999999999999999999999999999999999999999999999994 899999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHH
Q 005581 297 LLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (690)
Q Consensus 297 ~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l 353 (690)
+++++|++|++.|+++|+++.+++++++ +++|++++|++.||||+|++.+|+++.+
T Consensus 158 ~l~~~~~~f~~~V~~~R~~~~~~~~~~~-~~~~~~~~Al~~gLvD~i~~~~~~~~~~ 213 (214)
T cd07022 158 EVDALYAMFVAAVARNRGLSAAAVRATE-GGVFRGQEAVAAGLADAVGTLDDALAAL 213 (214)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHhh-cCeeeHHHHHHcCCCcccCCHHHHHHHh
Confidence 9999999999999999999999999988 9999999999999999999999998765
No 7
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=100.00 E-value=4.8e-40 Score=332.11 Aligned_cols=206 Identities=25% Similarity=0.407 Sum_probs=196.9
Q ss_pred eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
.|++|+++|+|.++ +..++.++.++|+++.+||+|++|+|+++++||++.+.++++++++.+++++||||||++
T Consensus 1 ~v~vi~i~g~i~~~------~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~ 74 (208)
T cd07023 1 KIAVIDIEGTISDG------GGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMG 74 (208)
T ss_pred CEEEEEEEEEEcCC------CCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 37999999999975 236789999999999999999999999999999999999999999999999999999999
Q ss_pred -CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHH
Q 005581 220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (690)
Q Consensus 220 -~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~l 298 (690)
.|+++||+|||+||+|||+|++.+|++|+.++.+||+++|+|+||+++++++|+||++++|+ ++||+++|+++++++
T Consensus 75 g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~--~~~s~~~~e~~~~~l 152 (208)
T cd07023 75 DVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPD--RPLTEEERAILQALV 152 (208)
T ss_pred CcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCC--CCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999995 699999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHH
Q 005581 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (690)
Q Consensus 299 d~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l 353 (690)
+++|++|++.|+++|+++.+++++++++.+|++++|+++||||++++.||+++.+
T Consensus 153 ~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~~~~ 207 (208)
T cd07023 153 DDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAIAKA 207 (208)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999988754
No 8
>PRK11778 putative inner membrane peptidase; Provisional
Probab=100.00 E-value=3.4e-40 Score=349.86 Aligned_cols=225 Identities=25% Similarity=0.378 Sum_probs=193.1
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhc-CCCCEE
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPVI 465 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~-~~KPVV 465 (690)
+++|+||+++|+|..+.. ....+.+.+.++.+. ++ ++|||++|||||++.+++.++..|.+++ ++|||+
T Consensus 89 ~~~v~VI~~~G~I~~~~~-------~~l~e~i~a~l~~A~-~~--~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVv 158 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEV-------ESLREEITAILAVAK-PG--DEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLT 158 (330)
T ss_pred CCeEEEEEEEEEECCCcc-------hhhHHHHHHHHHhcc-CC--CeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEE
Confidence 479999999999986431 112344444444444 33 6999999999999999999999888875 479999
Q ss_pred EEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHH
Q 005581 466 ASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFA 545 (690)
Q Consensus 466 a~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~ 545 (690)
++|+++|+||||||||+||.|||+|++++|||||++..++++++++|+||+++.+++|+||+.+ +|++++||++|+.++
T Consensus 159 a~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~-~pf~~~see~Re~~q 237 (330)
T PRK11778 159 VAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTL-TLFGENTEEGREKFR 237 (330)
T ss_pred EEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCC-CCCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHcCCCCCCceEEEEecCCCC
Q 005581 546 KSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSP 625 (690)
Q Consensus 546 ~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a~l~~~~~~~~~~~~~~~~ 625 (690)
+.++++|+.|++.|+++|+ ...++.+++|++|+|++|+++||||+||+.++++..+.+.+++ ..+.|...++
T Consensus 238 ~~Ld~~y~~F~~~Va~~R~--~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~~~~v------~~~~~~~~~~ 309 (330)
T PRK11778 238 EELEETHQLFKDFVQRYRP--QLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMKEHEV------LEVRYQQKKK 309 (330)
T ss_pred HHHHHHHHHHHHHHHhcCC--cCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHhcCCc------eeEecCCCCC
Confidence 9999999999999999996 2356778999999999999999999999999999988876554 2355665544
Q ss_pred CHHHHH
Q 005581 626 TLPEIL 631 (690)
Q Consensus 626 ~~~~~l 631 (690)
+.+.+
T Consensus 310 -~~~~l 314 (330)
T PRK11778 310 -LAERL 314 (330)
T ss_pred -HHHHH
Confidence 44443
No 9
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=100.00 E-value=7.9e-40 Score=330.33 Aligned_cols=207 Identities=38% Similarity=0.655 Sum_probs=198.9
Q ss_pred cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEE
Q 005581 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASM 468 (690)
Q Consensus 389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v 468 (690)
+||||+++|+|. .+.+++.+.|+++.+|++|++|||++|||||++.+++.|++.|+.++++|||||++
T Consensus 1 ~v~vi~i~g~i~------------~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v 68 (207)
T TIGR00706 1 TIAILPVSGAIA------------VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASM 68 (207)
T ss_pred CEEEEEEEEEEe------------cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 589999999997 23689999999999999999999999999999999999999999987779999999
Q ss_pred CccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581 469 SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA 548 (690)
Q Consensus 469 ~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i 548 (690)
+|.|+||||+||++||+|+|+|++.+||+||+..+++++++++|+||+++.++.|+||++. +|++++||++++.+++.+
T Consensus 69 ~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~-~~~~~~s~~~~e~~~~~l 147 (207)
T TIGR00706 69 GGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIG-SPTRELTPEERDILQNLV 147 (207)
T ss_pred CCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCC-CCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 788999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHcC
Q 005581 549 QNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKAN 608 (690)
Q Consensus 549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a~ 608 (690)
++.|+.|++.|+++|+++.++++.+++|++|+|++|+++||||++++.+++++.+++++|
T Consensus 148 ~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~~~~ 207 (207)
T TIGR00706 148 NESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDALKWLAELSG 207 (207)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999988764
No 10
>PRK10949 protease 4; Provisional
Probab=100.00 E-value=2.3e-39 Score=370.77 Aligned_cols=219 Identities=16% Similarity=0.266 Sum_probs=206.9
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEE
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIG 216 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvA 216 (690)
.++.|++|+++|+|.+.... .+.++.+.+.+.|++|.+|++||||||++|||||++.++++|+++|+++|+++|||||
T Consensus 324 ~~~~Iavi~~~G~I~~g~~~--~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVva 401 (618)
T PRK10949 324 TGGSIAVIFANGAIMDGEET--PGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVV 401 (618)
T ss_pred CCCeEEEEEEEEEEcCCCCc--CCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEE
Confidence 46799999999999976432 2457889999999999999999999999999999999999999999999999999999
Q ss_pred Eec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHH
Q 005581 217 YVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLT 295 (690)
Q Consensus 217 y~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~ 295 (690)
++. .|+|+||||||+||+|||+|++.+|++||.+..++++++|+|+||+++.++.|+|+.. .+ .+++|+++|+.++
T Consensus 402 s~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~-~~--~~~~s~e~~~~~q 478 (618)
T PRK10949 402 SMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV-SI--TKALPPEFQQMMQ 478 (618)
T ss_pred EECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc-cc--cCCCCHHHHHHHH
Confidence 997 8999999999999999999999999999999999999999999999999999999975 44 3799999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCCC
Q 005581 296 ALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQ 360 (690)
Q Consensus 296 ~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~~ 360 (690)
.+++++|++|++.|+++|+++.++++++++|++|++++|+++||||++++.+++++.+++.+|++
T Consensus 479 ~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~a~~~ 543 (618)
T PRK10949 479 LSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKLK 543 (618)
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999885
No 11
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=100.00 E-value=3.2e-39 Score=327.54 Aligned_cols=212 Identities=28% Similarity=0.381 Sum_probs=198.8
Q ss_pred cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEE
Q 005581 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASM 468 (690)
Q Consensus 389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v 468 (690)
.|+||+++|+|.+..+..+...+..+.+++.++|+++.+|++||+|||++||+||+....+.+.++|+.++++|||||++
T Consensus 1 ~v~vi~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v 80 (214)
T cd07022 1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFV 80 (214)
T ss_pred CEEEEEEEEEEeCCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999976543332344567899999999999999999999999999999999999999999885589999999
Q ss_pred CccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581 469 SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA 548 (690)
Q Consensus 469 ~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i 548 (690)
+|.|+||||+||++||+|||+|++.+|+||++...++++++++|+||+++.++.|+||++. .|++++|+++|+.+++.+
T Consensus 81 ~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~-~~~~~~s~~~re~~~~~l 159 (214)
T cd07022 81 NGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDG-NPDEPLSDEARARLQAEV 159 (214)
T ss_pred CCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCC-CCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 889999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581 549 QNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI 602 (690)
Q Consensus 549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~ 602 (690)
++.|++|++.|+++|+++.++++.++ |++|+|++|++.||||+|+++++++++
T Consensus 160 ~~~~~~f~~~V~~~R~~~~~~~~~~~-~~~~~~~~Al~~gLvD~i~~~~~~~~~ 212 (214)
T cd07022 160 DALYAMFVAAVARNRGLSAAAVRATE-GGVFRGQEAVAAGLADAVGTLDDALAA 212 (214)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHhh-cCeeeHHHHHHcCCCcccCCHHHHHHH
Confidence 99999999999999999999999988 999999999999999999999998875
No 12
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=100.00 E-value=4.5e-38 Score=318.43 Aligned_cols=208 Identities=15% Similarity=0.223 Sum_probs=196.0
Q ss_pred eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
.|++|+++|+|++... .++.+++.++.++|+++.+||+|++|+|+++++||++.+.++++++|+.|++++|||||+++
T Consensus 1 ~i~v~~~~g~i~~~~~--~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~ 78 (211)
T cd07019 1 SIGVVFANGAIVDGEE--TQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAG 78 (211)
T ss_pred CEEEEEEEEEEeCCCC--CCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 4899999999998764 33567899999999999999999999999999999999999999999999999999999999
Q ss_pred -CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEee-ccccccCCcccCCCCCHHHHHHHHHH
Q 005581 220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRI-GKYKSAGDQLTRKTMSEENCEMLTAL 297 (690)
Q Consensus 220 -~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~-G~yKsa~ep~~~~~~S~e~re~~~~~ 297 (690)
.|+++||+||++||+|||+|++.+|++|+..+.+|++++|+|+||+++++++ |.||.. .+++||++.|+.++.+
T Consensus 79 g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~----~~~~~s~e~r~~~~~~ 154 (211)
T cd07019 79 GAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVS----ITRALPPEAQLGLQLS 154 (211)
T ss_pred CeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCC----CCCCCCHHHHHHHHHH
Confidence 5679999999999999999999999999999999999999999999999998 888842 3689999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHH
Q 005581 298 LDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISML 353 (690)
Q Consensus 298 ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l 353 (690)
++++|++|++.|++.|++++++++++.++.+|++++|++.||||++++.|++++.+
T Consensus 155 ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~~~ 210 (211)
T cd07019 155 IENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKA 210 (211)
T ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988765
No 13
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=100.00 E-value=2.4e-38 Score=322.88 Aligned_cols=211 Identities=23% Similarity=0.305 Sum_probs=194.5
Q ss_pred EEEeecccccCCCCCC------CCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhc-CCCCE
Q 005581 392 VIRASGSISRVRSPLS------LSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPV 464 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~------~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~-~~KPV 464 (690)
+|.++|.|....+... ...+..+.+++++.|+++.+|++||+|||++|||||.+.+++.|+++|+.++ .+|||
T Consensus 2 ~i~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpV 81 (222)
T cd07018 2 VLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPV 81 (222)
T ss_pred EEcCCCcccccCCCCChhhhccCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeE
Confidence 5778888876554321 2334578899999999999999999999999999999999999999999886 59999
Q ss_pred EEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccC--CCCChhHHH
Q 005581 465 IASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQ--RPFRPDEAE 542 (690)
Q Consensus 465 Va~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~--~~~s~~~~~ 542 (690)
||++++ |+|||||||++||+|||+|++.+|+|||+...++++++++|+||+++.+++|+||++. +|+ +++|+++|+
T Consensus 82 ia~~~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~-~~~~~~~~s~~~r~ 159 (222)
T cd07018 82 IAYADG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAV-EPFTRDDMSPEARE 159 (222)
T ss_pred EEEeCC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEecccccc-chhhcccCCHHHHH
Confidence 999997 9999999999999999999999999999999999999999999999999999999998 555 479999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581 543 LFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK 604 (690)
Q Consensus 543 ~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~ 604 (690)
.+++.++++|++|++.|+++|+++.+.++.+++|++|+|++|++.||||++++.+++++.++
T Consensus 160 ~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~l~ 221 (222)
T cd07018 160 QTQALLDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEARLK 221 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988764
No 14
>PRK11778 putative inner membrane peptidase; Provisional
Probab=100.00 E-value=6.1e-38 Score=332.64 Aligned_cols=208 Identities=18% Similarity=0.227 Sum_probs=185.8
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEE
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGY 217 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy 217 (690)
++.|++|+++|+|..... .++.+.+.++.+++.++ ++|+|++|||||.+..+..+...|.++|+++|||+++
T Consensus 89 ~~~v~VI~~~G~I~~~~~------~~l~e~i~a~l~~A~~~--~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~ 160 (330)
T PRK11778 89 KPRLFVLDFKGDIDASEV------ESLREEITAILAVAKPG--DEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVA 160 (330)
T ss_pred CCeEEEEEEEEEECCCcc------hhhHHHHHHHHHhccCC--CeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEE
Confidence 568999999999987543 34545555544444444 6999999999999999999999999999999999999
Q ss_pred ec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHH
Q 005581 218 VP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296 (690)
Q Consensus 218 ~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~ 296 (690)
++ .|+|+||||||+||+|||+|++.+|++||.++.++|+++|+|+||+++++++|+||++++||. ++||++|+++++
T Consensus 161 v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~--~~see~Re~~q~ 238 (330)
T PRK11778 161 VDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG--ENTEEGREKFRE 238 (330)
T ss_pred ECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC--CCCHHHHHHHHH
Confidence 97 899999999999999999999999999999999999999999999999999999999999995 689999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 297 LLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 297 ~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
.++++|+.|++.|+++|+. .+++++++|++|++++|+++||||+|++.||++..+.+..
T Consensus 239 ~Ld~~y~~F~~~Va~~R~~--l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~~~ 297 (330)
T PRK11778 239 ELEETHQLFKDFVQRYRPQ--LDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMKEH 297 (330)
T ss_pred HHHHHHHHHHHHHHhcCCc--CCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHhcC
Confidence 9999999999999999962 3466788999999999999999999999999988776543
No 15
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=100.00 E-value=2.7e-37 Score=312.00 Aligned_cols=206 Identities=45% Similarity=0.716 Sum_probs=195.1
Q ss_pred cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcC-CCCEEEE
Q 005581 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE-SKPVIAS 467 (690)
Q Consensus 389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~-~KPVVa~ 467 (690)
.|+||+++|+|.+. +..+.+++.++|+++.+|++|++|+|++|||||++...+.+++.++.+++ +|||||+
T Consensus 1 ~v~vi~i~g~i~~~--------~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~ 72 (208)
T cd07023 1 KIAVIDIEGTISDG--------GGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVAS 72 (208)
T ss_pred CEEEEEEEEEEcCC--------CCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 48999999999853 12568899999999999999999999999999999988999999988754 9999999
Q ss_pred ECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHH
Q 005581 468 MSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKS 547 (690)
Q Consensus 468 v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~ 547 (690)
++|.|+||||+||++||+|||+|++.+||||+....++++++++|+||+++.++.|+||+.. .|++++|+++++.+++.
T Consensus 73 v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~-~~~~~~s~~~~e~~~~~ 151 (208)
T cd07023 73 MGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKG-SPDRPLTEEERAILQAL 151 (208)
T ss_pred ECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCC-CCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 78999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581 548 AQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA 603 (690)
Q Consensus 548 i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a 603 (690)
++.+|++|++.|+++|+++.++++++.+|.+|++++|++.||||+|++.++++++.
T Consensus 152 l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~~~~ 207 (208)
T cd07023 152 VDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAIAKA 207 (208)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999988764
No 16
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=100.00 E-value=7.4e-37 Score=350.36 Aligned_cols=219 Identities=17% Similarity=0.238 Sum_probs=206.9
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEE
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIG 216 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvA 216 (690)
.++.|++|+++|+|.+.... .+.++.+.+.+.|++|.+|++||+|||++|||||++.++++|+++|.++|+++|||||
T Consensus 306 ~~~~vavI~~~G~I~~~~~~--~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva 383 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDT--EGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIV 383 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCc--ccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEE
Confidence 57899999999999975432 2446788999999999999999999999999999999999999999999999999999
Q ss_pred Eec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHH
Q 005581 217 YVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLT 295 (690)
Q Consensus 217 y~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~ 295 (690)
+++ .|+|+||||||+||+|||+|++.+|++|+.+..++++++|+|+||+++.+++|+||.+ .++ +++|+++++.++
T Consensus 384 ~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~-s~~--~~~t~~~~~~~~ 460 (584)
T TIGR00705 384 SMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV-SLL--RPLTAEDQAIMQ 460 (584)
T ss_pred EECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC-CCC--CCCCHHHHHHHH
Confidence 997 7999999999999999999999999999999999999999999999999999999987 555 689999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCCC
Q 005581 296 ALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQ 360 (690)
Q Consensus 296 ~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~~ 360 (690)
..++++|++|++.|+++|+++.++++.+++|++|++++|+++||||++++.+++++.+++.++++
T Consensus 461 ~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~~~Ai~~a~~la~~~ 525 (584)
T TIGR00705 461 LSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGLDEAVAKAAKLAHCR 525 (584)
T ss_pred HHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999884
No 17
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=100.00 E-value=8.1e-37 Score=309.31 Aligned_cols=208 Identities=35% Similarity=0.530 Sum_probs=192.7
Q ss_pred cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhc-CCCCEEEE
Q 005581 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPVIAS 467 (690)
Q Consensus 389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~-~~KPVVa~ 467 (690)
.||||+++|+|.++.+ ..+..+.+++.+.|+++.+|++||+|||+++||||++...+.+.+.++.++ .+|||||+
T Consensus 1 ~i~v~~~~g~i~~~~~----~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~ 76 (211)
T cd07019 1 SIGVVFANGAIVDGEE----TQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVS 76 (211)
T ss_pred CEEEEEEEEEEeCCCC----CCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4899999999997653 223466899999999999999999999999999999999888888887774 49999999
Q ss_pred ECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecc-cchhhhhhccCCCCChhHHHHHHH
Q 005581 468 MSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISR-GKYAEVLAAEQRPFRPDEAELFAK 546 (690)
Q Consensus 468 v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~-g~~~~~~~~~~~~~s~~~~~~~~~ 546 (690)
++|.|+||||+||++||+|||+|++.+||||++...++++++++|+|++++.++. |.++ . .+.+++|+++++.++.
T Consensus 77 v~g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k-~--~~~~~~s~e~r~~~~~ 153 (211)
T cd07019 77 AGGAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLAD-V--SITRALPPEAQLGLQL 153 (211)
T ss_pred ECCeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCccc-C--CCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 7766 3 3589999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581 547 SAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA 603 (690)
Q Consensus 547 ~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a 603 (690)
.++++|++|++.|+++|++++++++.+.+|++|+|+||++.||||+|++++++++.+
T Consensus 154 ~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~~~ 210 (211)
T cd07019 154 SIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKA 210 (211)
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988764
No 18
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=3.9e-36 Score=321.22 Aligned_cols=214 Identities=22% Similarity=0.318 Sum_probs=203.8
Q ss_pred eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
.|++|+++|.|........ .++.+++.+.|+++..||++++|+|++|||||.+.+++.|+++|+++++.+ ||+++++
T Consensus 60 ~Iavi~~~G~I~~~~~~~~--~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~-PV~v~v~ 136 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLR--FIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKK-PVVVSVG 136 (317)
T ss_pred EEEEEEeeeeeecCCCccc--cccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcC-CEEEEEC
Confidence 7999999999997654221 578899999999999999999999999999999999999999999999876 9999998
Q ss_pred -CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHH
Q 005581 220 -VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (690)
Q Consensus 220 -~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~l 298 (690)
.|+||||||||+||+|||+|++.+|+|||.+..+.+.++++|+||+.+.+++|+||...++| .++++++++.++..+
T Consensus 137 ~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~--~~~t~e~~~~~q~~~ 214 (317)
T COG0616 137 GYAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPF--RPLTEEEREILQKEI 214 (317)
T ss_pred CeecchhhhhhccCCEEEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcc--cCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999 589999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhC
Q 005581 299 DNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (690)
Q Consensus 299 d~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g 358 (690)
++.|+.|++.|++.|++..+++..+.+|++|++++|++.||||++++.++++..+.+..+
T Consensus 215 ~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~~~ 274 (317)
T COG0616 215 DETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAG 274 (317)
T ss_pred HHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999888766
No 19
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=100.00 E-value=9.4e-35 Score=280.21 Aligned_cols=152 Identities=38% Similarity=0.651 Sum_probs=135.0
Q ss_pred HhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCC
Q 005581 207 FKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT 285 (690)
Q Consensus 207 ~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~ 285 (690)
||+++||||||++ .++|++|||||+||+|||+|++.+|++|+.++.+||+++|+|+||+++++++|+||+++ +++++
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~--~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAG--FPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCC--CTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCcccccc--CcCCC
Confidence 6789999999998 67889999999999999999999999999999999999999999999999999999999 56689
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCCC
Q 005581 286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQ 360 (690)
Q Consensus 286 ~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~~ 360 (690)
||+++|++++++++++|++|++.|+++|+++.+++++++++++|++++|+++||||++++.||+++.+++.+++|
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~~v~ 154 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLAGVK 154 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998874
No 20
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.97 E-value=6.1e-32 Score=260.65 Aligned_cols=151 Identities=33% Similarity=0.516 Sum_probs=135.6
Q ss_pred cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCCh
Q 005581 459 SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRP 538 (690)
Q Consensus 459 ~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~ 538 (690)
+++|||||+++++|+||||||||+||.|||+|++.+|||||....++++++++|+||+++.++.|+||++. .+.+++||
T Consensus 4 ~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~-~~~~~~s~ 82 (154)
T PF01343_consen 4 ASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAG-FPRDPMSE 82 (154)
T ss_dssp HTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCC-CTTSS--H
T ss_pred ccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCcccccc-CcCCCCCH
Confidence 56999999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHcCCC
Q 005581 539 DEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIP 610 (690)
Q Consensus 539 ~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a~l~ 610 (690)
++|+.+++.++.+|+.|++.|+++|+++.++++++++|++|+|++|+++||||++++.+++++.++++++++
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~~v~ 154 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLAGVK 154 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998864
No 21
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.96 E-value=2.7e-27 Score=267.96 Aligned_cols=428 Identities=15% Similarity=0.110 Sum_probs=267.0
Q ss_pred CCeEEEEEEceee----ccc--cccccCCCCCHHHHHHHHHHhh-cCCCceEEEEEcC-----CCCCCHHHHHH------
Q 005581 138 KGSVLTMKLRGQI----ADQ--LKSRFSSGLSLPQICENFVKAA-YDPRIVGIYLHIE-----PLSCGWGKVEE------ 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I----~~~--~~~~~~~~~s~~~i~~~L~~Aa-~D~~IkgVvL~i~-----s~Gg~~~~~~e------ 199 (690)
++.|++|+|+.+= -+. ...+..+...+.++.++|+++. .|+.|++|||+.. +.|+++.....
T Consensus 18 ~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~ 97 (546)
T TIGR03222 18 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWK 97 (546)
T ss_pred eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchh
Confidence 5679999998641 010 1112223345678999999998 7899999999864 23555543210
Q ss_pred --H--------HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeEEEeccceeccchhhhhhh-cCce
Q 005581 200 --I--------RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEK-VGIE 265 (690)
Q Consensus 200 --I--------~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~--~~vg~~Gv~~~~~~~k~lLeK-lGI~ 265 (690)
+ +.....++..+|||||.++ .|..+|+.|+++||.+++.++ +.++...+ + +|+-
T Consensus 98 ~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv------------~~lGl~ 165 (546)
T TIGR03222 98 VNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEV------------PLLGVL 165 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccch------------hccCcC
Confidence 0 1111234457899999999 567889999999999999986 68888766 4 5665
Q ss_pred eEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HhcCcccHHHHHhcCCeeEec
Q 005581 266 PQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERF-INDGVYKVERLKEEGFITNVL 344 (690)
Q Consensus 266 ~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~-~~~~v~~a~eAl~~GLID~i~ 344 (690)
|. .+... .....|.+......++ +.|+.++++||+++||||++.
T Consensus 166 P~---------~gg~~--------------------------~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv 210 (546)
T TIGR03222 166 PG---------TGGLT--------------------------RVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVV 210 (546)
T ss_pred Cc---------cchhh--------------------------hccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEe
Confidence 51 11110 0011123333434443 678999999999999999999
Q ss_pred chhHHHHHHHH----HhCCCC-CCCCCcccccccccccccc------c-ccCCCCCcEEEEEeecccccCC-------CC
Q 005581 345 YDDEVISMLKE----RLGVQK-DKNLPMVDYRKYSGVRRWT------L-GLTGGGDQIAVIRASGSISRVR-------SP 405 (690)
Q Consensus 345 ~~de~~~~l~~----~~g~~~-~~~~~~v~~~~y~~~~~~~------~-~~~~~~~~IAvI~i~G~I~~~~-------~~ 405 (690)
..+++.+.+.+ .....+ ..+.+-|++....+..... + -.....+.|++|++++|-..+. ..
T Consensus 211 ~~~~l~~~a~~lA~~la~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~ 290 (546)
T TIGR03222 211 KPSQFDAAIAERAAELAAQSDRPADAKGVQLTPLERTIDEDGVRYPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQ 290 (546)
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCcCCCceeeeehhhhcccCCcceeeEEEEEeccCCEEEEEecChhhcCcccccccccc
Confidence 88777655433 232221 1223334332222211100 0 0012247899999999854310 01
Q ss_pred CCCCCcchHHHHHHHHHHHHH-hCCCceEEEEEcc-----CCCcchhh---------hhHH---HHHHHHh-cCCCCEEE
Q 005581 406 LSLSSSGIIGEQLIEKIRKVR-ESKRYKAAIIRID-----SPGGDALA---------SDLM---WREIRLL-SESKPVIA 466 (690)
Q Consensus 406 ~~~~~~~~~~~~l~~~l~~a~-~D~~VkaVVLrin-----SpGG~~~a---------s~~i---~~~I~~l-~~~KPVVa 466 (690)
..|..+..+.++|.+++.+++ +|++||+|||+.. |.|+++.. .+.+ .+.+..+ ..+|||||
T Consensus 291 ~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviA 370 (546)
T TIGR03222 291 GANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFA 370 (546)
T ss_pred ccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 124566678899999999998 4599999999874 35565421 0111 1122333 34999999
Q ss_pred EE-CccccHHH-HHHHHhcCeEEE-------ecCceec----cccccccccchHHHHHHc-CCceeeecccchhhhhhcc
Q 005581 467 SM-SDVAASGG-YYMAMAAGTILA-------ENLTLTG----SIGVVTGKFNLGKLYEKI-GFNKEIISRGKYAEVLAAE 532 (690)
Q Consensus 467 ~v-~g~AaSGG-y~iA~aaD~I~A-------~p~t~~G----SIGv~~~~~~~~~l~~kl-Gi~~~~i~~g~~~~~~~~~ 532 (690)
.| +|.|.||| +.||++||++|| ++++.+| .+|+++.......|...+ |.
T Consensus 371 av~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~~~L~~~v~G~----------------- 433 (546)
T TIGR03222 371 LIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNGLSRLATRFYAE----------------- 433 (546)
T ss_pred EECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCcHHHHHHHhcCc-----------------
Confidence 99 89999999 999999999999 8999988 367777666665555444 43
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHH----HHHHHHHcC
Q 005581 533 QRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRA----VAIAKQKAN 608 (690)
Q Consensus 533 ~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a----i~~a~~~a~ 608 (690)
.| ....+.+++|+.++++||+++|||+++.+.++. .+.|.+++.
T Consensus 434 -----------------------------~~---a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~ 481 (546)
T TIGR03222 434 -----------------------------PA---PVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERAS 481 (546)
T ss_pred -----------------------------hh---HHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHh
Confidence 11 001234688999999999999999999876554 445555555
Q ss_pred CCCCCceEEEEecCCCCCHHHHHhcc-ccch----hcHHHH-HHHHHHhccCCc---chhhhcCccchHHHh
Q 005581 609 IPEDRQVTLVEMSKPSPTLPEILSSV-GNSI----AGVDRT-LKELLQDLTFSD---GVQARMDGILFQRLE 671 (690)
Q Consensus 609 l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~----~~~~~~-~~~~~~~~~~~~---g~qa~~~~~~~~~~~ 671 (690)
.++.. +. .....+... ..+. .+.+.. ...++.+.+..+ |+.||+....++|-+
T Consensus 482 ~~p~a------~~----~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~p~f~~ 543 (546)
T TIGR03222 482 FSPDA------LT----GLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGKKAQFDM 543 (546)
T ss_pred cCHHH------HH----HHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCCCCCCCc
Confidence 44310 00 011222211 1111 222222 244566777888 999999988877643
No 22
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.96 E-value=2.9e-28 Score=240.25 Aligned_cols=172 Identities=18% Similarity=0.229 Sum_probs=157.5
Q ss_pred EEEEceeecccccc--ccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-
Q 005581 143 TMKLRGQIADQLKS--RFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP- 219 (690)
Q Consensus 143 vI~l~G~I~~~~~~--~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~- 219 (690)
+|+++|+|+++... .+.+.+++.++.++|+++.+||+|++|||+++++||++...+++++++++|++++|||||+++
T Consensus 1 ~i~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G 80 (177)
T cd07014 1 VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGG 80 (177)
T ss_pred CEEEEEEEeCCCCcCcCCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 48999999987642 344568999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 220 ~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
.|+++||+||++||+|||+|++.|+++|+... +++.+.+++
T Consensus 81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~---------------------------------------~~~~~~~l~ 121 (177)
T cd07014 81 NAASGGYWISTPANYIVANPSTLVGSIGIFGV---------------------------------------QLADQLSIE 121 (177)
T ss_pred chhHHHHHHHHhCCEEEECCCCeEEEechHhh---------------------------------------HHHHHHHHH
Confidence 78999999999999999999999999999332 678899999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHH-hcCcccHHHHHhcCCeeEecchhHHHHHH
Q 005581 300 NIYGNWLDKVSSTKGKRKEDIERFI-NDGVYKVERLKEEGFITNVLYDDEVISML 353 (690)
Q Consensus 300 ~~~~~f~~~Va~~Rg~~~~~v~~~~-~~~v~~a~eAl~~GLID~i~~~de~~~~l 353 (690)
++|++|++.|++.||++.+.+++++ ++.+|++++|++.||||++++.||+.+.|
T Consensus 122 ~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~~~~l 176 (177)
T cd07014 122 NGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAKL 176 (177)
T ss_pred HHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHHHHHHHh
Confidence 9999999999999999999998877 56899999999999999999999987765
No 23
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.96 E-value=7e-27 Score=265.32 Aligned_cols=426 Identities=16% Similarity=0.143 Sum_probs=266.4
Q ss_pred CCeEEEEEEcee----eccc--cccccCCCCCHHHHHHHHHHhh-cCCCceEEEEEcCC-----CCCCHHHHH-------
Q 005581 138 KGSVLTMKLRGQ----IADQ--LKSRFSSGLSLPQICENFVKAA-YDPRIVGIYLHIEP-----LSCGWGKVE------- 198 (690)
Q Consensus 138 ~~~VlvI~l~G~----I~~~--~~~~~~~~~s~~~i~~~L~~Aa-~D~~IkgVvL~i~s-----~Gg~~~~~~------- 198 (690)
++.|++|.|+.+ +.+. ...+..+...+.++.++++++. +|+.|++|||+.+. .|+++....
T Consensus 22 ~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~ 101 (550)
T PRK08184 22 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWK 101 (550)
T ss_pred eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchh
Confidence 578999999853 1111 1222233445788999999998 78999999998753 345443211
Q ss_pred --------HHHH-HHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeEEEeccceeccchhhhhhh-cCce
Q 005581 199 --------EIRR-HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEK-VGIE 265 (690)
Q Consensus 199 --------eI~~-aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~--~~vg~~Gv~~~~~~~k~lLeK-lGI~ 265 (690)
+... ....++..+|||||.++ .|..+|+.|+++||.+++.+. +.++...+ + +|+-
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv------------~~~Gl~ 169 (550)
T PRK08184 102 VNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEV------------PLLGVL 169 (550)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccch------------hccccC
Confidence 1111 12234457899999999 577899999999999999987 78888766 3 5555
Q ss_pred eEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HhcCcccHHHHHhcCCeeEec
Q 005581 266 PQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERF-INDGVYKVERLKEEGFITNVL 344 (690)
Q Consensus 266 ~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~-~~~~v~~a~eAl~~GLID~i~ 344 (690)
|. .+.. ..+...|.+......++ +.|..++++||+++||||++.
T Consensus 170 P~---------~gg~--------------------------~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv 214 (550)
T PRK08184 170 PG---------TGGL--------------------------TRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVV 214 (550)
T ss_pred CC---------cchH--------------------------HHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEee
Confidence 41 1110 01111234445444554 578999999999999999999
Q ss_pred chhHHHHHHHHH----hCCCC-CCCCCcccccccccc--------cccccccCCCCCcEEEEEeecccccCC-------C
Q 005581 345 YDDEVISMLKER----LGVQK-DKNLPMVDYRKYSGV--------RRWTLGLTGGGDQIAVIRASGSISRVR-------S 404 (690)
Q Consensus 345 ~~de~~~~l~~~----~g~~~-~~~~~~v~~~~y~~~--------~~~~~~~~~~~~~IAvI~i~G~I~~~~-------~ 404 (690)
..+++.+.+.+. ....+ +.+.+-|.+....+. ..+.... ...+.|++|+++.|-..+. .
T Consensus 215 ~~d~l~~~a~~~A~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~va~itlnrP~~~Na~~~~~~~~ 293 (550)
T PRK08184 215 KPSKFDAKVAERAAELAAASDRPADAKGVALTPLERTIDADGLRYRHVDVEI-DRAARTATITVKAPTAAQPADIAGIVA 293 (550)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCCCCccccccccccccCCceeeEEEEEEE-EccCCEEEEEEeCcccccccccccccc
Confidence 888776655433 22221 112222222211111 1111111 1246899999999865320 0
Q ss_pred CCCCCCcchHHHHHHHHHHHHHh-CCCceEEEEEcc-----CCCcch--hh--h----hHHH----HHHHHh-cCCCCEE
Q 005581 405 PLSLSSSGIIGEQLIEKIRKVRE-SKRYKAAIIRID-----SPGGDA--LA--S----DLMW----REIRLL-SESKPVI 465 (690)
Q Consensus 405 ~~~~~~~~~~~~~l~~~l~~a~~-D~~VkaVVLrin-----SpGG~~--~a--s----~~i~----~~I~~l-~~~KPVV 465 (690)
...|..+..+.++|.+++.++.. |++||+|||+.. |.|+++ .. . .... +.++.+ ..+||||
T Consensus 294 ~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 373 (550)
T PRK08184 294 AGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLF 373 (550)
T ss_pred cccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 11245567788999999999986 799999999874 345552 11 0 0111 122333 2389999
Q ss_pred EEEC-ccccHHH-HHHHHhcCeEEEe-------cCceec----cccccccccchHHHHHH-cCCceeeecccchhhhhhc
Q 005581 466 ASMS-DVAASGG-YYMAMAAGTILAE-------NLTLTG----SIGVVTGKFNLGKLYEK-IGFNKEIISRGKYAEVLAA 531 (690)
Q Consensus 466 a~v~-g~AaSGG-y~iA~aaD~I~A~-------p~t~~G----SIGv~~~~~~~~~l~~k-lGi~~~~i~~g~~~~~~~~ 531 (690)
|.|+ |.|.||| +.|+++||++||+ +++.+| .+|+++.......|... +|..
T Consensus 374 AaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~--------------- 438 (550)
T PRK08184 374 ALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNGLSRLARRFYGEP--------------- 438 (550)
T ss_pred EEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCcHHHhHHHhcChH---------------
Confidence 9997 9999999 9999999999999 999988 47777776666555544 3431
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH----HHHHc
Q 005581 532 EQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI----AKQKA 607 (690)
Q Consensus 532 ~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~----a~~~a 607 (690)
| ..++..+++|+.++++||+++|||+++.+.++..+. |.+++
T Consensus 439 -------------------------------~---A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia 484 (550)
T PRK08184 439 -------------------------------D---PLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERA 484 (550)
T ss_pred -------------------------------H---HHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHH
Confidence 1 001112478999999999999999999887655444 45555
Q ss_pred CCCCCCceEEEEecCCCCCHHHHHhcccc-ch----hcHHHH-HHHHHHhccCCc---chhhhcCccchHHH
Q 005581 608 NIPEDRQVTLVEMSKPSPTLPEILSSVGN-SI----AGVDRT-LKELLQDLTFSD---GVQARMDGILFQRL 670 (690)
Q Consensus 608 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~----~~~~~~-~~~~~~~~~~~~---g~qa~~~~~~~~~~ 670 (690)
..++. .+. .....+..... .. ...+.. ...++++.+..+ |+.||+..-.++|-
T Consensus 485 ~~~p~------a~~----~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr~~~f~ 546 (550)
T PRK08184 485 SLSPD------ALT----GMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQKAQFD 546 (550)
T ss_pred hCCHH------HHH----HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCCCCCCC
Confidence 54431 011 11122221111 11 122222 345566777788 99999998877654
No 24
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.96 E-value=1e-27 Score=236.32 Aligned_cols=173 Identities=38% Similarity=0.525 Sum_probs=152.2
Q ss_pred EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhc-CCCCEEEEECc
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPVIASMSD 470 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~-~~KPVVa~v~g 470 (690)
+|.++|+|++.........+.++.+++.++|+++.+|++||+|||+++|+||++...+.+.+.++.++ .+|||||+++|
T Consensus 1 ~i~~~g~i~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G 80 (177)
T cd07014 1 VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGG 80 (177)
T ss_pred CEEEEEEEeCCCCcCcCCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 47899999976644433445678899999999999999999999999999999888888888887774 59999999999
Q ss_pred cccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHH
Q 005581 471 VAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQN 550 (690)
Q Consensus 471 ~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~ 550 (690)
.|+||||+||++||+|||+|++.+|++|+... ++..+..+++
T Consensus 81 ~a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~--------------------------------------~~~~~~~l~~ 122 (177)
T cd07014 81 NAASGGYWISTPANYIVANPSTLVGSIGIFGV--------------------------------------QLADQLSIEN 122 (177)
T ss_pred chhHHHHHHHHhCCEEEECCCCeEEEechHhh--------------------------------------HHHHHHHHHH
Confidence 99999999999999999999999999886543 3456788999
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHh-cCCcccHHHHHHcCCcccccChHHHHHH
Q 005581 551 AYKLFRDKAAFSRSMTVDKMEEYA-QGRVWTGNDAASRGLVDALGGFSRAVAI 602 (690)
Q Consensus 551 ~y~~F~~~Va~~R~~~~~~v~~l~-~Grv~tg~eA~e~GLVD~ig~~~~ai~~ 602 (690)
+|+.|++.|+++||++.+.+++++ .|++|+|+||++.||||++++.+++.+.
T Consensus 123 ~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~~~~ 175 (177)
T cd07014 123 GYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAK 175 (177)
T ss_pred HHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHHHHHHH
Confidence 999999999999999999988755 6999999999999999999999987765
No 25
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.95 E-value=1.1e-26 Score=225.07 Aligned_cols=160 Identities=33% Similarity=0.398 Sum_probs=145.8
Q ss_pred EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~ 471 (690)
||+++|+|++ .+.+++++.|+++.+|+++++|+|++|||||++.+...|+++|+.+ +||||++++|.
T Consensus 1 vi~i~g~I~~-----------~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~--~kpvva~~~g~ 67 (161)
T cd00394 1 VIFINGVIED-----------VSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQAS--RKPVIAYVGGQ 67 (161)
T ss_pred CEEEEeEEcc-----------chHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHh--CCCEEEEECCh
Confidence 6899999995 4578999999999999999999999999999999999999999988 69999999999
Q ss_pred ccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHH
Q 005581 472 AASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNA 551 (690)
Q Consensus 472 AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~ 551 (690)
|+|+||+|+++||+||+.|++.+|++|+....+++.+ +++++.+++.++.+
T Consensus 68 ~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~ 118 (161)
T cd00394 68 AASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGN-----------------------------PTAQEADQRIILYF 118 (161)
T ss_pred hHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCC-----------------------------hHHHHHHHHHHHHH
Confidence 9999999999999999999999999998766543321 56788999999999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHh-cCCcccHHHHHHcCCcccc
Q 005581 552 YKLFRDKAAFSRSMTVDKMEEYA-QGRVWTGNDAASRGLVDAL 593 (690)
Q Consensus 552 y~~F~~~Va~~R~~~~~~v~~l~-~Grv~tg~eA~e~GLVD~i 593 (690)
|++|++.|+++|+++.+++++.. .|.+|+++||+++||||+|
T Consensus 119 ~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 119 IARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 99999999999999999887765 5999999999999999986
No 26
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.94 E-value=3.8e-26 Score=221.27 Aligned_cols=159 Identities=19% Similarity=0.238 Sum_probs=146.7
Q ss_pred EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a 221 (690)
+|.|+|+|++ .++.++++.|+++..|+++++|+|++|++||++.+..+|+++|++++ ||||++++ .|
T Consensus 1 vi~i~g~I~~---------~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~---kpvva~~~g~~ 68 (161)
T cd00394 1 VIFINGVIED---------VSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASR---KPVIAYVGGQA 68 (161)
T ss_pred CEEEEeEEcc---------chHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhC---CCEEEEECChh
Confidence 5789999997 46789999999999999999999999999999999999999999885 99999998 89
Q ss_pred chhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 005581 222 GEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI 301 (690)
Q Consensus 222 as~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~ 301 (690)
+|+||+|+++||+|||.|++.++++|+.....++++ ++++++++.+++.+
T Consensus 69 ~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~------------------------------~~~~~~~~~~l~~~ 118 (161)
T cd00394 69 ASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGN------------------------------PTAQEADQRIILYF 118 (161)
T ss_pred HHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCC------------------------------hHHHHHHHHHHHHH
Confidence 999999999999999999999999999776665543 77899999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHh-cCcccHHHHHhcCCeeEe
Q 005581 302 YGNWLDKVSSTKGKRKEDIERFIN-DGVYKVERLKEEGFITNV 343 (690)
Q Consensus 302 ~~~f~~~Va~~Rg~~~~~v~~~~~-~~v~~a~eAl~~GLID~i 343 (690)
|++|++.|+++|+++.+++++.+. +.+|+++||+++||||+|
T Consensus 119 ~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 119 IARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 999999999999999999988775 578999999999999985
No 27
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.93 E-value=8e-25 Score=217.72 Aligned_cols=167 Identities=22% Similarity=0.211 Sum_probs=135.6
Q ss_pred EEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEEC
Q 005581 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS 469 (690)
Q Consensus 390 IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~ 469 (690)
|+||+++|.|.++ ..+.+.+.|+.+.+|+ +++|+|+||||||++.++..|++.|... +|||||+|+
T Consensus 1 ~~vv~i~g~I~~~-----------~~~~l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~~--~kPvia~v~ 66 (187)
T cd07020 1 VYVLEINGAITPA-----------TADYLERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILAS--PVPVVVYVY 66 (187)
T ss_pred CEEEEEeeEEChH-----------HHHHHHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHhC--CCCEEEEEe
Confidence 5899999999842 3578899999998665 9999999999999999999999999765 999999998
Q ss_pred ---ccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHH
Q 005581 470 ---DVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAK 546 (690)
Q Consensus 470 ---g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~ 546 (690)
|.|+|||++|+++||+|+|+|++.+|++++....+... .+.. .++
T Consensus 67 ~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~-------------------------------~~~~-~~~ 114 (187)
T cd07020 67 PSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGG-------------------------------SDPV-MEK 114 (187)
T ss_pred cCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCc-------------------------------chHH-HHH
Confidence 99999999999999999999999999988764432110 1111 222
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHH-HhcCCcccHHHHHHcCCcccccChH-HHHHH
Q 005581 547 SAQNAYKLFRDKAAFSRSMTVDKMEE-YAQGRVWTGNDAASRGLVDALGGFS-RAVAI 602 (690)
Q Consensus 547 ~i~~~y~~F~~~Va~~R~~~~~~v~~-l~~Grv~tg~eA~e~GLVD~ig~~~-~ai~~ 602 (690)
.+...+..|...+++.||.+.+.+++ +++|++|+|+||+++||||++++.+ ++++.
T Consensus 115 ~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 115 KILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 33333445788899999998777765 6789999999999999999998776 45533
No 28
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.88 E-value=5.8e-22 Score=192.83 Aligned_cols=158 Identities=16% Similarity=0.220 Sum_probs=135.5
Q ss_pred EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~ 471 (690)
+|.+.|+|.+ .+.+.+++.|..+..++.++.|+|+||||||++.++..|++.|+.+ ++||++.+.|.
T Consensus 2 ~i~i~g~I~~-----------~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~--~~~v~~~~~g~ 68 (162)
T cd07013 2 EIMLTGEVED-----------ISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFI--KADVVTIIDGL 68 (162)
T ss_pred EEEEccEECc-----------HHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhc--CCCceEEEEee
Confidence 6889999973 5678999999999999999999999999999999999999999988 78999999999
Q ss_pred ccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581 472 AASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ 549 (690)
Q Consensus 472 AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~ 549 (690)
|+|+|++|+++|| .+++.|++.++...... .... ...+.+..++.++
T Consensus 69 aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~-----------------------------~~~g--~~~d~~~~~~~l~ 117 (162)
T cd07013 69 AASMGSVIAMAGAKGKRFILPNAMMMIHQPWG-----------------------------GTLG--DATDMRIYADLLL 117 (162)
T ss_pred hhhHHHHHHHcCCCCcEEEecCEEEEEccCcc-----------------------------cccC--CHHHHHHHHHHHH
Confidence 9999999999999 69999988765321000 0001 2455678889999
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHhcCCc-ccHHHHHHcCCcccc
Q 005581 550 NAYKLFRDKAAFSRSMTVDKMEEYAQGRV-WTGNDAASRGLVDAL 593 (690)
Q Consensus 550 ~~y~~F~~~Va~~R~~~~~~v~~l~~Grv-~tg~eA~e~GLVD~i 593 (690)
+.++.|.+.++++||++.++++++++... ++|+||+++||||+|
T Consensus 118 ~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 118 KVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 99999999999999999999999777555 599999999999986
No 29
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.87 E-value=2e-21 Score=189.92 Aligned_cols=165 Identities=22% Similarity=0.258 Sum_probs=132.3
Q ss_pred EEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEEC
Q 005581 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS 469 (690)
Q Consensus 390 IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~ 469 (690)
|.||+++|+|.+ .+.+.+.+.|+++.+| ++++|+|++|||||.+.++..|++.|+.. ++||++++.
T Consensus 1 v~vi~i~G~I~~-----------~~~~~l~~~l~~A~~~-~~~~i~l~inSPGG~v~~~~~I~~~i~~~--~~pvv~~v~ 66 (172)
T cd07015 1 VYVAQIKGQITS-----------YTYDQFDRYITIAEQD-NAEAIIIELDTPGGRADAAGNIVQRIQQS--KIPVIIYVY 66 (172)
T ss_pred CEEEEEeeEECH-----------hHHHHHHHHHHHHhcC-CCCeEEEEEECCCCCHHHHHHHHHHHHhc--CcCEEEEEe
Confidence 578999999985 3467788889988765 68999999999999999999999999865 899999998
Q ss_pred ---ccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHH
Q 005581 470 ---DVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAK 546 (690)
Q Consensus 470 ---g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~ 546 (690)
|.|+|+||+|+++||+|+|.|+|.+|++|++.+...- | .. +....
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~-------~--------------------~~-----~~~~~ 114 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQN-------G--------------------SI-----IEAPP 114 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCC-------C--------------------cc-----ccchH
Confidence 9999999999999999999999999999986432110 0 00 00122
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC-hHHHH
Q 005581 547 SAQNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG-FSRAV 600 (690)
Q Consensus 547 ~i~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~-~~~ai 600 (690)
.+..-+..+++.+++.||.+.+.++...+ ...+|++||+++|+||.+.. .+|++
T Consensus 115 ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll 170 (172)
T cd07015 115 KITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELL 170 (172)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHh
Confidence 33334445555589999999999988655 99999999999999999865 45544
No 30
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.87 E-value=2.3e-21 Score=191.09 Aligned_cols=161 Identities=22% Similarity=0.264 Sum_probs=136.8
Q ss_pred EEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEEC
Q 005581 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS 469 (690)
Q Consensus 390 IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~ 469 (690)
|.||+++|+|.+ ...+.+.+.|+++.+++ +++|+|++|||||.+.+++.|++.|+.. ++|||++++
T Consensus 1 v~vi~i~g~I~~-----------~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~--~~pvva~V~ 66 (178)
T cd07021 1 VYVIPIEGEIDP-----------GLAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNS--PIPTIAYVN 66 (178)
T ss_pred CEEEEEeeEECH-----------HHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 579999999985 24678889999999887 9999999999999999999999999876 899999999
Q ss_pred ccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581 470 DVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ 549 (690)
Q Consensus 470 g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~ 549 (690)
|.|+|+|++|+++||+|+|.|++.+|++|+++..++- ...+.+.
T Consensus 67 g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~~~~------------------------------------~~~~K~~ 110 (178)
T cd07021 67 DRAASAGALIALAADEIYMAPGATIGAAEPIPGDGNG------------------------------------AADEKVQ 110 (178)
T ss_pred CchHHHHHHHHHhCCeEEECCCCeEecCeeEcCCCcc------------------------------------chhHHHH
Confidence 9999999999999999999999999999987654320 0112344
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHhcCC--------------cccHHHHHHcCCcccccC-hHHHH
Q 005581 550 NAYKLFRDKAAFSRSMTVDKMEEYAQGR--------------VWTGNDAASRGLVDALGG-FSRAV 600 (690)
Q Consensus 550 ~~y~~F~~~Va~~R~~~~~~v~~l~~Gr--------------v~tg~eA~e~GLVD~ig~-~~~ai 600 (690)
+.+..+.+..++.||.+.+.++.+.+-. .+|++||+++|++|.+.. .++++
T Consensus 111 ~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 111 SYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 5566777778999999999999988855 689999999999999854 55554
No 31
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.86 E-value=4.1e-21 Score=186.22 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=134.2
Q ss_pred EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~ 471 (690)
.|++.|+|..+. +.+.+.+.+.|+.+.++ +.|+|.||||||++.++..|++.|+.+ +|||++.+.|.
T Consensus 2 ~i~~~g~I~~~~--------~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~--~~pvi~~v~g~ 68 (160)
T cd07016 2 EIYIYGDIGSDW--------GVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRH--KGKVTVKIDGL 68 (160)
T ss_pred EEEEEeEeCCCc--------ccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEcch
Confidence 588999998521 24578999999988776 789999999999999999999999887 89999999999
Q ss_pred ccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHH
Q 005581 472 AASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNA 551 (690)
Q Consensus 472 AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~ 551 (690)
|+|+|++|+++||+++|+|++.++........ +-...+.+..++.+++.
T Consensus 69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~-------------------------------~g~~~~~~~~~~~l~~~ 117 (160)
T cd07016 69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGA-------------------------------AGNADDLRKAADLLDKI 117 (160)
T ss_pred HHhHHHHHHhcCCeEEECCCcEEEEECCcccc-------------------------------CcCHHHHHHHHHHHHHH
Confidence 99999999999999999999987643321110 01134566788899999
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccc
Q 005581 552 YKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDAL 593 (690)
Q Consensus 552 y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~i 593 (690)
+++|.+.+++.+|++.++++.++. +++++++||+++||||++
T Consensus 118 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 118 DESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 999999999999999999999888 557899999999999986
No 32
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.84 E-value=7.9e-20 Score=181.93 Aligned_cols=165 Identities=13% Similarity=0.138 Sum_probs=131.9
Q ss_pred EEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-
Q 005581 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP- 219 (690)
Q Consensus 141 VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~- 219 (690)
|++|+|+|.|.+. ....+.+.|+.+.+|+ +++|+|+||||||.+.++++|.+.|.. .+||||++++
T Consensus 1 ~~vv~i~g~I~~~---------~~~~l~~~l~~a~~~~-~~~vvl~InSpGG~v~~~~~i~~~l~~---~~kPvia~v~~ 67 (187)
T cd07020 1 VYVLEINGAITPA---------TADYLERAIDQAEEGG-ADALIIELDTPGGLLDSTREIVQAILA---SPVPVVVYVYP 67 (187)
T ss_pred CEEEEEeeEEChH---------HHHHHHHHHHHHHhCC-CCEEEEEEECCCCCHHHHHHHHHHHHh---CCCCEEEEEec
Confidence 4789999999864 2467999999998664 999999999999999999999988874 5799999995
Q ss_pred ---CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHH
Q 005581 220 ---VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296 (690)
Q Consensus 220 ---~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~ 296 (690)
.|+|+||+|+++||+|+|.|++.+|++++..... + .. ........
T Consensus 68 ~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~--------------------------~----~~--~~~~~~~~ 115 (187)
T cd07020 68 SGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGG--------------------------G----GG--SDPVMEKK 115 (187)
T ss_pred CCCCchhHHHHHHHhCCceeECCCCcEEeccccccCC--------------------------C----Cc--chHHHHHH
Confidence 6889999999999999999999999998731110 0 00 12233345
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHH-HhcCcccHHHHHhcCCeeEecchh-HHHH
Q 005581 297 LLDNIYGNWLDKVSSTKGKRKEDIERF-INDGVYKVERLKEEGFITNVLYDD-EVIS 351 (690)
Q Consensus 297 ~ld~~~~~f~~~Va~~Rg~~~~~v~~~-~~~~v~~a~eAl~~GLID~i~~~d-e~~~ 351 (690)
+++.++ .|...+++.||.+.+.++++ ..++.|+++||+++||||++...+ +++.
T Consensus 116 ~~~~~~-~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~ 171 (187)
T cd07020 116 ILNDAV-AYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK 171 (187)
T ss_pred HHHHHH-HHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence 555555 47889999999998888774 578999999999999999998765 5543
No 33
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.82 E-value=3e-19 Score=176.16 Aligned_cols=160 Identities=15% Similarity=0.205 Sum_probs=133.4
Q ss_pred EEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-
Q 005581 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP- 219 (690)
Q Consensus 141 VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~- 219 (690)
|.+|+++|+|.+. ..+.+.+.|++|.+++ +++|+|++|||||.+..+++|.+.|.++ .|||++|++
T Consensus 1 v~vi~i~g~I~~~---------~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v~~~~~I~~~l~~~---~~pvva~V~g 67 (178)
T cd07021 1 VYVIPIEGEIDPG---------LAAFVERALKEAKEEG-ADAVVLDIDTPGGRVDSALEIVDLILNS---PIPTIAYVND 67 (178)
T ss_pred CEEEEEeeEECHH---------HHHHHHHHHHHHHhCC-CCeEEEEEECcCCCHHHHHHHHHHHHhC---CCCEEEEECC
Confidence 5789999999863 2456888999999886 9999999999999999999999999854 699999998
Q ss_pred CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 220 VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 220 ~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
.|+|+||+|+++||+|+|.|++.+|++|+.... | . + .+...+.
T Consensus 68 ~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~~~-------------------~------~-----~-------~~~~K~~ 110 (178)
T cd07021 68 RAASAGALIALAADEIYMAPGATIGAAEPIPGD-------------------G------N-----G-------AADEKVQ 110 (178)
T ss_pred chHHHHHHHHHhCCeEEECCCCeEecCeeEcCC-------------------C------c-----c-------chhHHHH
Confidence 789999999999999999999999999883211 0 0 0 1123455
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhcC--------------cccHHHHHhcCCeeEec-chhHHH
Q 005581 300 NIYGNWLDKVSSTKGKRKEDIERFINDG--------------VYKVERLKEEGFITNVL-YDDEVI 350 (690)
Q Consensus 300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~--------------v~~a~eAl~~GLID~i~-~~de~~ 350 (690)
+.+..+++.+++.||.+.+.++.+++.. .++++||++.|++|.+. +.+|++
T Consensus 111 ~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 111 SYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 5677788889999999999999999876 58999999999999995 455554
No 34
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.81 E-value=6.3e-19 Score=172.38 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=129.1
Q ss_pred EEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-
Q 005581 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP- 219 (690)
Q Consensus 141 VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~- 219 (690)
|.+|+++|+|.+. +.+.+.+.|++|.+| ++++|+|++|||||.+..+.+|.+.|+. +++||++|+.
T Consensus 1 v~vi~i~G~I~~~---------~~~~l~~~l~~A~~~-~~~~i~l~inSPGG~v~~~~~I~~~i~~---~~~pvv~~v~p 67 (172)
T cd07015 1 VYVAQIKGQITSY---------TYDQFDRYITIAEQD-NAEAIIIELDTPGGRADAAGNIVQRIQQ---SKIPVIIYVYP 67 (172)
T ss_pred CEEEEEeeEECHh---------HHHHHHHHHHHHhcC-CCCeEEEEEECCCCCHHHHHHHHHHHHh---cCcCEEEEEec
Confidence 5789999999863 345788889998765 6999999999999999999999999974 5799999994
Q ss_pred ---CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHH
Q 005581 220 ---VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTA 296 (690)
Q Consensus 220 ---~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~ 296 (690)
.++|+||||+++||+|+|.|++.+|++|+... + | + ++.. +.+..
T Consensus 68 ~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~--~-----------------g------~----~~~~----~~~~~ 114 (172)
T cd07015 68 PGASAASAGTYIALGSHLIAMAPGTSIGACRPILG--Y-----------------S------Q----NGSI----IEAPP 114 (172)
T ss_pred CCCeehhHHHHHHHhcCceEECCCCEEEEcccccc--C-----------------C------C----CCcc----ccchH
Confidence 68999999999999999999999999998421 0 0 0 0000 11122
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHhc-CcccHHHHHhcCCeeEec-chhHHH
Q 005581 297 LLDNIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEGFITNVL-YDDEVI 350 (690)
Q Consensus 297 ~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~-~v~~a~eAl~~GLID~i~-~~de~~ 350 (690)
.+.+-+-.+++.+++.||.+.+.+++.++. ..++++||+++|+||.+. +.+|++
T Consensus 115 ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll 170 (172)
T cd07015 115 KITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELL 170 (172)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHh
Confidence 233344556667999999999999998876 577999999999999995 445543
No 35
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.80 E-value=1.3e-18 Score=169.24 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=134.5
Q ss_pred EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a 221 (690)
+|.|.|+|.+ .+..++++.|..+..++.++.|+|.||||||++..+.+|+++|+.+ ++||++++. .|
T Consensus 2 ~i~i~g~I~~---------~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~---~~~v~~~~~g~a 69 (162)
T cd07013 2 EIMLTGEVED---------ISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFI---KADVVTIIDGLA 69 (162)
T ss_pred EEEEccEECc---------HHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhc---CCCceEEEEeeh
Confidence 5788899976 3467899999999999999999999999999999999999999976 468999887 79
Q ss_pred chhhhHHhhccC--eeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 222 as~gY~LAsaaD--~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
+|+||+|+++|| +.++.|.+.++.+.... .. .-+..+.+...+.++
T Consensus 70 aS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~----------------------------~~----~g~~~d~~~~~~~l~ 117 (162)
T cd07013 70 ASMGSVIAMAGAKGKRFILPNAMMMIHQPWG----------------------------GT----LGDATDMRIYADLLL 117 (162)
T ss_pred hhHHHHHHHcCCCCcEEEecCEEEEEccCcc----------------------------cc----cCCHHHHHHHHHHHH
Confidence 999999999999 58888899988764310 11 112445677889999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhcCcc-cHHHHHhcCCeeEe
Q 005581 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNV 343 (690)
Q Consensus 300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~-~a~eAl~~GLID~i 343 (690)
.+++.|.+.+++.||++.++++++++...| +++||+++||||+|
T Consensus 118 ~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 118 KVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 999999999999999999999999888666 99999999999985
No 36
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.78 E-value=5.7e-18 Score=164.27 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=134.6
Q ss_pred EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a 221 (690)
.|.|.|+|.+.. +.+..++.+.|+.+..+ +.|+|.||||||++.++.+|.+.|+.+ +|||++++. .|
T Consensus 2 ~i~~~g~I~~~~------~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~---~~pvi~~v~g~a 69 (160)
T cd07016 2 EIYIYGDIGSDW------GVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRH---KGKVTVKIDGLA 69 (160)
T ss_pred EEEEEeEeCCCc------ccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEcchH
Confidence 578999998742 24678999999999776 789999999999999999999998855 699999998 68
Q ss_pred chhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 005581 222 GEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI 301 (690)
Q Consensus 222 as~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~ 301 (690)
+|+|++|+++||+++|.|++.++.+.+.. +. .....+.+...+.++.+
T Consensus 70 ~s~g~~ia~a~d~~~~~~~a~~~~~~~~~------------~~--------------------~g~~~~~~~~~~~l~~~ 117 (160)
T cd07016 70 ASAASVIAMAGDEVEMPPNAMLMIHNPST------------GA--------------------AGNADDLRKAADLLDKI 117 (160)
T ss_pred HhHHHHHHhcCCeEEECCCcEEEEECCcc------------cc--------------------CcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999876521 00 11244567788899999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEe
Q 005581 302 YGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNV 343 (690)
Q Consensus 302 ~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i 343 (690)
++.|.+.+++.+|++.+.+++++.+. .++++||+++||||++
T Consensus 118 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 118 DESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 99999999999999999999999976 6799999999999985
No 37
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=99.78 E-value=3.9e-18 Score=167.43 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=134.1
Q ss_pred EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~ 471 (690)
+|++.|+|++ ...+.++..|..+..++..+.|+|+||||||++.++..|++.|+.. +.||++.+.|.
T Consensus 11 ~i~i~g~I~~-----------~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~--~~~v~t~~~g~ 77 (171)
T cd07017 11 IIFLGGPIDD-----------EVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYI--KPPVSTICLGL 77 (171)
T ss_pred EEEEcCEEcH-----------HHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEEeE
Confidence 8899999984 3568899999999999889999999999999999999999999977 89999999999
Q ss_pred ccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581 472 AASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ 549 (690)
Q Consensus 472 AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~ 549 (690)
|+|+|++|+++|| .+++.|++.++........ .| +.++.....+.++
T Consensus 78 aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~------------------~g-------------~~~~~~~~~~~l~ 126 (171)
T cd07017 78 AASMGALLLAAGTKGKRYALPNSRIMIHQPLGGA------------------GG-------------QASDIEIQAKEIL 126 (171)
T ss_pred ehhHHHHHHHcCCCCCEEEccchHHHHcCCCccC------------------CC-------------CHHHHHHHHHHHH
Confidence 9999999999999 7999999987643311100 01 1234455566778
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHh-cCCcccHHHHHHcCCcccc
Q 005581 550 NAYKLFRDKAAFSRSMTVDKMEEYA-QGRVWTGNDAASRGLVDAL 593 (690)
Q Consensus 550 ~~y~~F~~~Va~~R~~~~~~v~~l~-~Grv~tg~eA~e~GLVD~i 593 (690)
...+.|.+.+++.+|++.+++..++ .++.++++||+++||||+|
T Consensus 127 ~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 127 RLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 8889999999999999999999887 5889999999999999986
No 38
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.77 E-value=9.5e-19 Score=178.26 Aligned_cols=164 Identities=21% Similarity=0.243 Sum_probs=131.3
Q ss_pred CCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-------------
Q 005581 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------------- 448 (690)
Q Consensus 386 ~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------------- 448 (690)
.+++|++|.+|.|-.. |+.+..+..+|.+++.++.+|+.+++|||++. +.|.+....
T Consensus 43 ~d~~I~lItlNRP~~~------Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~ 116 (290)
T KOG1680|consen 43 EDNGIALITLNRPKAL------NALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIF 116 (290)
T ss_pred cCCCeEEEEeCChHHh------ccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccc
Confidence 3589999999999774 55667788999999999999999999999974 345444221
Q ss_pred hHHHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 449 DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 449 ~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
...|+.+.++ +||||+.++|+|.+||..|++.||++||++++++|- +|+++.+.+...+..-+|
T Consensus 117 ~~~~~~~~~~--~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG---------- 184 (290)
T KOG1680|consen 117 LRVWDLVSRL--KKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVG---------- 184 (290)
T ss_pred cchhhhhhhc--ccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhC----------
Confidence 1234445434 899999999999999999999999999999999994 788888877766643333
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK 604 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~ 604 (690)
.+| +++.+++|+.++++||+++|||++|...++++.+|.
T Consensus 185 ------------------------------------~s~-----Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv 223 (290)
T KOG1680|consen 185 ------------------------------------KSR-----ALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAV 223 (290)
T ss_pred ------------------------------------hHH-----HHHHHHhcCcccHHHHHhCCceeEeecchhHHHHHH
Confidence 233 667789999999999999999999999888776666
Q ss_pred HHcC
Q 005581 605 QKAN 608 (690)
Q Consensus 605 ~~a~ 608 (690)
+++.
T Consensus 224 ~l~~ 227 (290)
T KOG1680|consen 224 KLAE 227 (290)
T ss_pred HHHH
Confidence 6654
No 39
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.76 E-value=3.6e-18 Score=178.40 Aligned_cols=218 Identities=17% Similarity=0.174 Sum_probs=139.8
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhh--h------h----
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALA--S------D---- 449 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~a--s------~---- 449 (690)
.+.|++|+++.+-.. |..+..+.++|.+.++++..|++||+|||+.+ |.|++... . .
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK05980 10 RDGIALLTLNRPEKL------NALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALR 83 (260)
T ss_pred ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHH
Confidence 368999999987542 45566788999999999999999999999874 35665421 0 0
Q ss_pred HHHH----HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeee
Q 005581 450 LMWR----EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEII 520 (690)
Q Consensus 450 ~i~~----~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i 520 (690)
.+.+ .+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+..++|.
T Consensus 84 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~----- 158 (260)
T PRK05980 84 DFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGR----- 158 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCH-----
Confidence 1111 12222 23999999999999999999999999999999999874 4554444333333222221
Q ss_pred cccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHH
Q 005581 521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV 600 (690)
Q Consensus 521 ~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai 600 (690)
. ...+.+++|+.++|+||+++||||++...+++.
T Consensus 159 -----------------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~ 192 (260)
T PRK05980 159 -----------------------------------------K-----RALELLLTGDAFSAERALEIGLVNAVVPHEELL 192 (260)
T ss_pred -----------------------------------------H-----HHHHHHHcCCccCHHHHHHcCCCCcccCHHHHH
Confidence 1 134557889999999999999999999877666
Q ss_pred HHHHHHc----CCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccch
Q 005581 601 AIAKQKA----NIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILF 667 (690)
Q Consensus 601 ~~a~~~a----~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~ 667 (690)
+.+.+++ ..++. .+...|..+...+..........+ .....++.+.+..+|+++++....+
T Consensus 193 ~~a~~~a~~la~~~p~------a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p 258 (260)
T PRK05980 193 PAARALARRIIRHSPV------AVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRP 258 (260)
T ss_pred HHHHHHHHHHHhCCHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCC
Confidence 6655544 44321 000001111111111000111111 2234456667778999999876544
No 40
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.76 E-value=3e-18 Score=177.37 Aligned_cols=215 Identities=17% Similarity=0.205 Sum_probs=144.5
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhh---h----hHHHHHH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA---S----DLMWREI 455 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~a---s----~~i~~~I 455 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++.+| ++|+|||+.+ |.|++... . +.+.+.+
T Consensus 7 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 79 (243)
T PRK07854 7 DGQVLTIELQRPERR------NALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEML 79 (243)
T ss_pred eCCEEEEEeCCCccc------cCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchhHHHHHHHHHHHH
Confidence 367999999998653 455667889999999998865 9999999864 45666532 1 1112222
Q ss_pred HHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhhhhh
Q 005581 456 RLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLA 530 (690)
Q Consensus 456 ~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~ 530 (690)
+.+ .-+|||||.++|.|.|||+.|+++||++||++.+.+|. +|+++.......+...+|.
T Consensus 80 ~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~--------------- 144 (243)
T PRK07854 80 HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGG--------------- 144 (243)
T ss_pred HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCH---------------
Confidence 333 33999999999999999999999999999999999874 4544443333333322322
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHcCCC
Q 005581 531 AEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANIP 610 (690)
Q Consensus 531 ~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a~l~ 610 (690)
. ...+.+++|+.++++||+++||||++...+++.+.|++++..+
T Consensus 145 -------------------------------~-----~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~a~~~a~~l~~~~ 188 (243)
T PRK07854 145 -------------------------------G-----RARAMLLGAEKLTAEQALATGMANRIGTLADAQAWAAEIAGLA 188 (243)
T ss_pred -------------------------------H-----HHHHHHHcCCCcCHHHHHHCCCcccccCHHHHHHHHHHHHhCC
Confidence 1 1345678899999999999999999998888999999998876
Q ss_pred CCCceEEEEecCCCCCHHHHHhcccc--chhcH-HHHHHHHHHhccCCcchhhhcCccchHH
Q 005581 611 EDRQVTLVEMSKPSPTLPEILSSVGN--SIAGV-DRTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
+.. +.. ..+++..... ..... ......++.+.+..+|+++++....+.|
T Consensus 189 ~~a------~~~----~K~~l~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 189 PLA------LQH----AKRVLNDDGAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred HHH------HHH----HHHHHHccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 521 111 1112211110 00011 1222444556677789999988765543
No 41
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.76 E-value=5e-18 Score=177.51 Aligned_cols=164 Identities=23% Similarity=0.291 Sum_probs=120.0
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhh------hhHH----H
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA------SDLM----W 452 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~a------s~~i----~ 452 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++.+|++||+|||+.. |.|+++.. .+.. .
T Consensus 15 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (261)
T PRK08138 15 ADGVALLRLNRPEAR------NALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTE 88 (261)
T ss_pred cCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHH
Confidence 468999999987542 45566788999999999999999999999874 45666432 1111 1
Q ss_pred HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhh
Q 005581 453 REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE 527 (690)
Q Consensus 453 ~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~ 527 (690)
+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+..++|.
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~------------ 156 (261)
T PRK08138 89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGK------------ 156 (261)
T ss_pred HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCH------------
Confidence 122222 23999999999999999999999999999999998873 5655554443333333332
Q ss_pred hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHc
Q 005581 528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA 607 (690)
Q Consensus 528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a 607 (690)
.| ..+.+++|+.++|+||+++||||++.+.++.++.+.+++
T Consensus 157 ----------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 197 (261)
T PRK08138 157 ----------------------------------FK-----AMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELA 197 (261)
T ss_pred ----------------------------------HH-----HHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHH
Confidence 11 345578899999999999999999998776555554444
No 42
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.76 E-value=5.4e-18 Score=176.69 Aligned_cols=219 Identities=14% Similarity=0.108 Sum_probs=138.8
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------hH----
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------DL---- 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~~---- 450 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++..|++||+|||+.+ |.|++.... ..
T Consensus 6 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 79 (255)
T PRK06563 6 RGHVLLIGLDRPAKR------NAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEG 79 (255)
T ss_pred ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhh
Confidence 368999999987642 45566788999999999999999999999875 456654210 00
Q ss_pred HHHHHH-Hh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 451 MWREIR-LL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 451 i~~~I~-~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
..+.+. .+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+.
T Consensus 80 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~-------------- 145 (255)
T PRK06563 80 GIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFP-------------- 145 (255)
T ss_pred hhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHH--------------
Confidence 112121 12 34899999999999999999999999999999998873 45444333222222
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH--
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI-- 602 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~-- 602 (690)
+.|...+ ..+.+++|+.++++||+++||||++.+.++.++.
T Consensus 146 --------------------------------~~vG~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 188 (255)
T PRK06563 146 --------------------------------QAAGWGN-----AMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAI 188 (255)
T ss_pred --------------------------------HHhhHHH-----HHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHH
Confidence 2222222 3455788999999999999999999987755554
Q ss_pred --HHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581 603 --AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ 668 (690)
Q Consensus 603 --a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~ 668 (690)
+++++..++. .+...|..+..............+ .....++.+.+..+|+++++....+.
T Consensus 189 ~~a~~la~~~~~------a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 251 (255)
T PRK06563 189 ELAERIARAAPL------GVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPAR 251 (255)
T ss_pred HHHHHHHhcCHH------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCC
Confidence 4455554431 000011111111111000001111 12234455667788999988765443
No 43
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.76 E-value=6.4e-18 Score=176.14 Aligned_cols=168 Identities=17% Similarity=0.213 Sum_probs=120.9
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------hHH----H
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------DLM----W 452 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~~i----~ 452 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++.+|++||+|||+.. |.|++.... +.+ .
T Consensus 9 ~~~v~~itlnrp~~~------Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK09674 9 QQRVLLLTLNRPEAR------NALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRP 82 (255)
T ss_pred ECCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHH
Confidence 367999999987642 45566788999999999999999999999874 466665320 011 1
Q ss_pred HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhh
Q 005581 453 REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE 527 (690)
Q Consensus 453 ~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~ 527 (690)
+.++.+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++. +|+++.......+...+|.
T Consensus 83 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~------------ 150 (255)
T PRK09674 83 QLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGK------------ 150 (255)
T ss_pred HHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCH------------
Confidence 112222 23999999999999999999999999999999998873 5555444333333222221
Q ss_pred hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHH----HHHH
Q 005581 528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRA----VAIA 603 (690)
Q Consensus 528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a----i~~a 603 (690)
. ...+.+++|+.++++||+++||||++.+.++. .+.|
T Consensus 151 ----------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a 191 (255)
T PRK09674 151 ----------------------------------S-----LASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLA 191 (255)
T ss_pred ----------------------------------H-----HHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHH
Confidence 1 13455788999999999999999999876654 4455
Q ss_pred HHHcCCCC
Q 005581 604 KQKANIPE 611 (690)
Q Consensus 604 ~~~a~l~~ 611 (690)
.+++..++
T Consensus 192 ~~l~~~~~ 199 (255)
T PRK09674 192 SKIARHSP 199 (255)
T ss_pred HHHHhCCH
Confidence 55555543
No 44
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.76 E-value=6.9e-18 Score=176.31 Aligned_cols=218 Identities=16% Similarity=0.167 Sum_probs=139.5
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------h----
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------D---- 449 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~---- 449 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++..|++||+|||+.. |.|++.... .
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (259)
T TIGR01929 10 TDGIAKITINRPQVR------NAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHR 83 (259)
T ss_pred CCCEEEEEecCCccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHH
Confidence 367999999987542 45566788999999999999999999999874 345654210 0
Q ss_pred -HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581 450 -LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG 523 (690)
Q Consensus 450 -~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g 523 (690)
.+.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+...
T Consensus 84 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~----------- 152 (259)
T TIGR01929 84 LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARI----------- 152 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHH-----------
Confidence 011112222 33999999999999999999999999999999998874 4544433332222222
Q ss_pred chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH-
Q 005581 524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI- 602 (690)
Q Consensus 524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~- 602 (690)
|...| ..+.+++|+.++|+||+++||||++.+.+++.+.
T Consensus 153 -----------------------------------vG~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 192 (259)
T TIGR01929 153 -----------------------------------VGQKK-----AREIWFLCRQYDAEQALDMGLVNTVVPLADLEKET 192 (259)
T ss_pred -----------------------------------hHHHH-----HHHHHHhCCccCHHHHHHcCCcccccCHHHHHHHH
Confidence 22222 4456788999999999999999999987765554
Q ss_pred ---HHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581 603 ---AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ 668 (690)
Q Consensus 603 ---a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~ 668 (690)
|++++..++. .+...|..+...... .......+ .....++.+.+..+|+++++.+..+.
T Consensus 193 ~~~a~~la~~~~~------a~~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~ 255 (259)
T TIGR01929 193 VRWCREILQKSPM------AIRMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPD 255 (259)
T ss_pred HHHHHHHHhCCHH------HHHHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 4455555431 011111111111110 00000011 22234555667789999998765544
No 45
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.75 E-value=7.5e-18 Score=175.78 Aligned_cols=163 Identities=21% Similarity=0.264 Sum_probs=119.0
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------h----HHHH
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------D----LMWR 453 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~----~i~~ 453 (690)
+.|++|+++.+-. .|..+..+.++|.+.++++..|++||+|||+.. |.|++.... + .+.+
T Consensus 12 ~~v~~itlnrp~~------~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK05862 12 GRVGLITLNRPKA------LNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYIT 85 (257)
T ss_pred CCEEEEEEcCCcc------cCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHH
Confidence 6799999998754 245566788999999999999999999999875 356654220 1 1112
Q ss_pred HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhhh
Q 005581 454 EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAEV 528 (690)
Q Consensus 454 ~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~ 528 (690)
.+..+ .-+|||||.++|.|.|||+.|+++||++||++.+.+|. +|+++.......+..++|.
T Consensus 86 ~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~------------- 152 (257)
T PRK05862 86 NWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGK------------- 152 (257)
T ss_pred HHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCH-------------
Confidence 22233 33999999999999999999999999999999998873 5555444333333322332
Q ss_pred hhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHc
Q 005581 529 LAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA 607 (690)
Q Consensus 529 ~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a 607 (690)
.| ..+.+++|+.++++||+++||||++.+.++..+.|.+++
T Consensus 153 ---------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (257)
T PRK05862 153 ---------------------------------AK-----AMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAA 193 (257)
T ss_pred ---------------------------------HH-----HHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHH
Confidence 11 345578899999999999999999998776655555544
No 46
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.75 E-value=7.5e-18 Score=176.22 Aligned_cols=219 Identities=17% Similarity=0.132 Sum_probs=140.5
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh-------hHH---
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS-------DLM--- 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as-------~~i--- 451 (690)
++.|++|+++.+ .. |..+..+.++|.+.++++..|++||+|||+.+ |.|++.... ...
T Consensus 10 ~~~v~~itlnrp-~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (261)
T PRK03580 10 NGSILEITLDRP-KA------NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPG 82 (261)
T ss_pred ECCEEEEEECCc-cc------cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhh
Confidence 367999999998 32 45566788999999999999999999999863 456655310 001
Q ss_pred -HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581 452 -WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY 525 (690)
Q Consensus 452 -~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~ 525 (690)
...+..+ ..+|||||.|+|.|.|||+.|+++||++||++++.+|. +|+++.......+..++|.
T Consensus 83 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~---------- 152 (261)
T PRK03580 83 GFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPP---------- 152 (261)
T ss_pred hhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCH----------
Confidence 1122222 33999999999999999999999999999999998873 5555444333333333332
Q ss_pred hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHH
Q 005581 526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQ 605 (690)
Q Consensus 526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~ 605 (690)
. ...+.+++|+.|+|+||+++||||++.+.++..+.+.+
T Consensus 153 ------------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 191 (261)
T PRK03580 153 ------------------------------------A-----IANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARE 191 (261)
T ss_pred ------------------------------------H-----HHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHH
Confidence 1 13345678999999999999999999987765555554
Q ss_pred ----HcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-----HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 606 ----KANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-----RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 606 ----~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
++..++. .+...|..+..............+ .....++.+.+..+|+++++....+.|
T Consensus 192 ~a~~la~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 192 LAQQLVNSAPL------AIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred HHHHHHhCCHH------HHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 4444431 000011111111110000001111 122345666777899999988765544
No 47
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.75 E-value=7.1e-18 Score=177.38 Aligned_cols=219 Identities=18% Similarity=0.113 Sum_probs=140.3
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------------- 448 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------------- 448 (690)
++.|++|+++.+=. .|..+..+.++|.+.++++.+|++||+|||+.+ |.|+++...
T Consensus 13 ~~~v~~itlnrp~~------~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 86 (272)
T PRK06142 13 ADHVAQVTLNRPGK------GNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLAR 86 (272)
T ss_pred cCCEEEEEEcCCCc------cCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccccccccc
Confidence 46899999998754 245667788999999999999999999999985 456654321
Q ss_pred --hHH-------HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcC
Q 005581 449 --DLM-------WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIG 514 (690)
Q Consensus 449 --~~i-------~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klG 514 (690)
+.. .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+...+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G 166 (272)
T PRK06142 87 PRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIG 166 (272)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHhC
Confidence 001 1112222 24999999999999999999999999999999998873 455444333333322222
Q ss_pred CceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCccccc
Q 005581 515 FNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALG 594 (690)
Q Consensus 515 i~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig 594 (690)
. .| ..+.+++|+.++|+||+++||||++.
T Consensus 167 ~----------------------------------------------~~-----a~~l~l~g~~~~a~eA~~~GLv~~vv 195 (272)
T PRK06142 167 D----------------------------------------------GH-----LRELALTGRDIDAAEAEKIGLVNRVY 195 (272)
T ss_pred H----------------------------------------------HH-----HHHHHHhCCCcCHHHHHHcCCccEec
Confidence 2 11 34557889999999999999999998
Q ss_pred Ch-HHHH----HHHHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581 595 GF-SRAV----AIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ 668 (690)
Q Consensus 595 ~~-~~ai----~~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~ 668 (690)
.. +++. +.+.++++.++. .+...|..+..............+ .....++.+.+..+|+.+++.+..+.
T Consensus 196 ~~~~~l~~~a~~~a~~ia~~~~~------a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~ 269 (272)
T PRK06142 196 DDADALLAAAHATAREIAAKSPL------AVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPE 269 (272)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCC
Confidence 74 5544 445555555431 010011111111111000001111 12234456677889999998876554
No 48
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.75 E-value=7.9e-18 Score=177.54 Aligned_cols=220 Identities=18% Similarity=0.121 Sum_probs=139.6
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------hH---
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------DL--- 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~~--- 450 (690)
++.|++|+++.+=. .|..+..+.++|.+.++++..|++||+|||+.+ |.|+++... ..
T Consensus 24 ~~~v~~itlnrp~~------~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 97 (277)
T PRK08258 24 DDGVATITLNRPER------KNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLA 97 (277)
T ss_pred ECCEEEEEeCCccc------ccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHH
Confidence 46899999998743 244556688999999999999999999999875 466655321 00
Q ss_pred H----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccc-cccchHHHHHHcCCceeee
Q 005581 451 M----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVT-GKFNLGKLYEKIGFNKEII 520 (690)
Q Consensus 451 i----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~-~~~~~~~l~~klGi~~~~i 520 (690)
+ .+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++ .......+...+|.
T Consensus 98 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~----- 172 (277)
T PRK08258 98 FTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQ----- 172 (277)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCH-----
Confidence 1 1122223 23999999999999999999999999999999998873 45442 12222222222221
Q ss_pred cccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHH
Q 005581 521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV 600 (690)
Q Consensus 521 ~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai 600 (690)
.| ..+.+++|+.++|+||+++||||++...++..
T Consensus 173 -----------------------------------------~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 206 (277)
T PRK08258 173 -----------------------------------------GR-----ASELLYTGRSMSAEEGERWGFFNRLVEPEELL 206 (277)
T ss_pred -----------------------------------------HH-----HHHHHHcCCCCCHHHHHHcCCCcEecCHHHHH
Confidence 11 34557889999999999999999999877665
Q ss_pred HHHHHH----cCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 601 AIAKQK----ANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 601 ~~a~~~----a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
+.+.++ +..++. .+...|..+...+..........+ .....++.+.+..+|+++++....+.|
T Consensus 207 ~~a~~~a~~la~~~~~------a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 274 (277)
T PRK08258 207 AEAQALARRLAAGPTF------AHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVF 274 (277)
T ss_pred HHHHHHHHHHHhCCHH------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 555544 444331 000011111111111000111111 222445566777899999988766554
No 49
>PLN02600 enoyl-CoA hydratase
Probab=99.75 E-value=7.4e-18 Score=175.30 Aligned_cols=219 Identities=17% Similarity=0.155 Sum_probs=140.1
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------hHHHH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------DLMWR 453 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~~i~~ 453 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++.+|++||+|||+.. |.|+++... ..+.+
T Consensus 2 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 75 (251)
T PLN02600 2 DSGIVELRLDRPEAK------NAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVN 75 (251)
T ss_pred CCcEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHH
Confidence 368999999987542 45667789999999999999999999999864 456655320 11122
Q ss_pred ----HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 454 ----EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 454 ----~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+..++|.
T Consensus 76 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~--------- 146 (251)
T PLN02600 76 SLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGR--------- 146 (251)
T ss_pred HHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCH---------
Confidence 12222 23999999999999999999999999999999998874 4443333222222222221
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH-
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA- 603 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a- 603 (690)
.| ..+.+++|+.++++||+++||||++.+.+++++.+
T Consensus 147 -------------------------------------~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~ 184 (251)
T PLN02600 147 -------------------------------------SR-----AKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKAL 184 (251)
T ss_pred -------------------------------------HH-----HHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHHHH
Confidence 11 34567889999999999999999999877665544
Q ss_pred ---HHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581 604 ---KQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ 668 (690)
Q Consensus 604 ---~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~ 668 (690)
.+++..++. .+...|..+..............+ .....++.+.+..+|+++++....+.
T Consensus 185 ~~a~~la~~~p~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 247 (251)
T PLN02600 185 ELAQEINQKGPL------AIKMAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPV 247 (251)
T ss_pred HHHHHHHhCCHH------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCC
Confidence 455555431 000111112111111000011111 12244556667789999998766544
No 50
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.75 E-value=1e-17 Score=175.34 Aligned_cols=218 Identities=13% Similarity=0.170 Sum_probs=139.1
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------hH-----
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------DL----- 450 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~~----- 450 (690)
+.|++|+++.+-.. |..+..+.++|.+.++++.+|++||+|||+.+ |.|+++..- ..
T Consensus 13 ~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (262)
T PRK07468 13 RGVATLTLNRPEKH------NALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEA 86 (262)
T ss_pred CcEEEEEEcCcccc------cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHH
Confidence 57999999987542 45667789999999999999999999999875 466665310 00
Q ss_pred --HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581 451 --MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG 523 (690)
Q Consensus 451 --i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g 523 (690)
+.+.++.+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++...... ++.++|
T Consensus 87 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~-~~~~vG--------- 156 (262)
T PRK07468 87 RRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPY-VVARMG--------- 156 (262)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhh-HHhhcc---------
Confidence 11112223 33999999999999999999999999999999998873 44443332111 111122
Q ss_pred chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH-
Q 005581 524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI- 602 (690)
Q Consensus 524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~- 602 (690)
..| ..+.+++|+.++++||+++||||++.+.++..+.
T Consensus 157 -------------------------------------~~~-----a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~ 194 (262)
T PRK07468 157 -------------------------------------EAN-----ARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAV 194 (262)
T ss_pred -------------------------------------HHH-----HHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHH
Confidence 111 3455788999999999999999999887655444
Q ss_pred ---HHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 603 ---AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 603 ---a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
+.+++..++. .+...|..+..............+ .....++.+.+..+|+++++.+..+.|
T Consensus 195 ~~~a~~l~~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 259 (262)
T PRK07468 195 EAEVTPYLSCAPG------AVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAW 259 (262)
T ss_pred HHHHHHHHhcCHH------HHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 5555665432 010111111111100001111111 122445556677789999988766543
No 51
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.75 E-value=8.9e-18 Score=175.15 Aligned_cols=163 Identities=24% Similarity=0.283 Sum_probs=118.2
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------hH---H--
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------DL---M-- 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~~---i-- 451 (690)
++.|++|+++.+-. |..+..+.++|.+.++++.+|++||+|||+.. |.|++.... +. +
T Consensus 9 ~~~v~~itl~rp~~-------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (257)
T PRK07658 9 EDHVAVITLNHPPA-------NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQ 81 (257)
T ss_pred eCCEEEEEECCCCC-------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHH
Confidence 46899999998722 45566788999999999999999999999874 466664310 01 1
Q ss_pred --HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 452 --WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 452 --~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
.+.++.+ ..+|||||+++|.|.|||+.|+++||++||++++.+|. +|+++.......+...+|.
T Consensus 82 ~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~--------- 152 (257)
T PRK07658 82 LGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGK--------- 152 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCH---------
Confidence 1122223 33999999999999999999999999999999998873 5655544433333333332
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK 604 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~ 604 (690)
.| ..+.+++|+.++++||+++||||++...+++.+.+.
T Consensus 153 -------------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 190 (257)
T PRK07658 153 -------------------------------------AK-----ALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAK 190 (257)
T ss_pred -------------------------------------HH-----HHHHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHH
Confidence 11 335568899999999999999999998775555444
Q ss_pred HHc
Q 005581 605 QKA 607 (690)
Q Consensus 605 ~~a 607 (690)
+++
T Consensus 191 ~~a 193 (257)
T PRK07658 191 KLA 193 (257)
T ss_pred HHH
Confidence 433
No 52
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.75 E-value=8.4e-18 Score=177.16 Aligned_cols=219 Identities=16% Similarity=0.126 Sum_probs=139.3
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------------- 448 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------------- 448 (690)
.+.|++|+++.|-.. |..+..+.++|.+.++++..|++||+|||+.. |.|+++...
T Consensus 15 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 88 (275)
T PLN02664 15 NSSVFHLNLNRPSQR------NALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGR 88 (275)
T ss_pred CCCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchh
Confidence 478999999998642 45566788999999999999999999999875 466655311
Q ss_pred --hHH-------HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcC
Q 005581 449 --DLM-------WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIG 514 (690)
Q Consensus 449 --~~i-------~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klG 514 (690)
+.+ .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++++.++. +|+.+.......+..++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 168 (275)
T PLN02664 89 SGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVG 168 (275)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhC
Confidence 001 1112222 33999999999999999999999999999999998873 444443332222322222
Q ss_pred CceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCccccc
Q 005581 515 FNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALG 594 (690)
Q Consensus 515 i~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig 594 (690)
. .| ..+.+++|+.|+|+||+++||||++.
T Consensus 169 ~----------------------------------------------~~-----A~~l~ltg~~~~a~eA~~~GLv~~vv 197 (275)
T PLN02664 169 Y----------------------------------------------GN-----AMELALTGRRFSGSEAKELGLVSRVF 197 (275)
T ss_pred H----------------------------------------------HH-----HHHHHHhCCCCCHHHHHHcCCCceee
Confidence 2 21 44557889999999999999999998
Q ss_pred Ch-HHHHH----HHHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581 595 GF-SRAVA----IAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ 668 (690)
Q Consensus 595 ~~-~~ai~----~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~ 668 (690)
+. ++..+ .|.+++..++.. +...|..+..............+ .....++.+.+..+|+++++....+.
T Consensus 198 ~~~~~l~~~~~~~a~~ia~~~p~a------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~ 271 (275)
T PLN02664 198 GSKEDLDEGVRLIAEGIAAKSPLA------VTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPV 271 (275)
T ss_pred CChhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCC
Confidence 73 54433 455566654320 00111112111111000011111 11233445567789999998865544
No 53
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.75 E-value=9.5e-18 Score=175.28 Aligned_cols=219 Identities=17% Similarity=0.172 Sum_probs=138.6
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------hHH--
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------DLM-- 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~~i-- 451 (690)
++.|++|+++.+-.. |..+..+.++|.++++++..|++||+|||+.. |.|++...- ..+
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (260)
T PRK05809 11 EGHIAVVTINRPKAL------NALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGL 84 (260)
T ss_pred eCCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHH
Confidence 367999999987642 45566788999999999999999999999874 345544210 011
Q ss_pred --HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 452 --WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 452 --~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++++.++. +|+++.......+..++|.
T Consensus 85 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~--------- 155 (260)
T PRK05809 85 LGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGP--------- 155 (260)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCH---------
Confidence 1122223 33999999999999999999999999999999998873 4544433332223222232
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK 604 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~ 604 (690)
. ...+.+++|+.++++||+++||||++.+.+++.+.+.
T Consensus 156 -------------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 193 (260)
T PRK05809 156 -------------------------------------G-----KAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAK 193 (260)
T ss_pred -------------------------------------H-----HHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHH
Confidence 1 1345578899999999999999999988776555554
Q ss_pred ----HHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581 605 ----QKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ 668 (690)
Q Consensus 605 ----~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~ 668 (690)
+++..++. .+...|..+..............+ .....++.+.+..+|+++++....+.
T Consensus 194 ~~a~~la~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~ 256 (260)
T PRK05809 194 ALANKIAANAPI------AVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKN 256 (260)
T ss_pred HHHHHHHhCCHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCC
Confidence 44444321 000011111111111000011111 12244555667789999998765543
No 54
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.75 E-value=1.1e-17 Score=174.98 Aligned_cols=220 Identities=16% Similarity=0.156 Sum_probs=140.6
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------hH---
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------DL--- 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~~--- 450 (690)
++.|++|+++.+-.. |..+..+..+|.++++++..|+++|+|||+.. |.|++.... ..
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (260)
T PRK07657 11 TPHVVKITLNRPRAA------NALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVS 84 (260)
T ss_pred cCCEEEEEEeCCccc------CCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHH
Confidence 368999999987642 45566788999999999999999999999874 345554210 01
Q ss_pred -HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 451 -MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 451 -i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
+.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+..++|.
T Consensus 85 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~--------- 155 (260)
T PRK07657 85 LIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGV--------- 155 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCH---------
Confidence 11122223 33999999999999999999999999999999999873 5554444333333322221
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK 604 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~ 604 (690)
. ...+.+++|+.++|+||+++||||++...++..+.+.
T Consensus 156 -------------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 193 (260)
T PRK07657 156 -------------------------------------G-----RAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAI 193 (260)
T ss_pred -------------------------------------H-----HHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHH
Confidence 1 1345578899999999999999999998777655555
Q ss_pred HH----cCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 605 QK----ANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 605 ~~----a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
++ +..++. .+...|..+..............+ .....++.+.+..+|+++++.+..+.|
T Consensus 194 ~~a~~l~~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 194 EIAEKIASNGPI------AVRQAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred HHHHHHHhCCHH------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 54 444321 000011111111110000001111 122445566677899999988665543
No 55
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.74 E-value=1.3e-17 Score=174.56 Aligned_cols=217 Identities=19% Similarity=0.202 Sum_probs=141.0
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhh------hh---H--
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALA------SD---L-- 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~a------s~---~-- 450 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++.+|++||+|||+.+ |.|++... .+ .
T Consensus 15 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (262)
T PRK06144 15 RGGIARITFNRPAAR------NAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYE 88 (262)
T ss_pred eCCEEEEEecCCccc------CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHH
Confidence 368999999987653 44556778999999999999999999999874 35665421 01 1
Q ss_pred --HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc-----ccccccccchHHHHHHcCCceeeecc
Q 005581 451 --MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS-----IGVVTGKFNLGKLYEKIGFNKEIISR 522 (690)
Q Consensus 451 --i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS-----IGv~~~~~~~~~l~~klGi~~~~i~~ 522 (690)
+.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+.+++|.
T Consensus 89 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~------- 161 (262)
T PRK06144 89 RRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGA------- 161 (262)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCH-------
Confidence 11122222 34999999999999999999999999999999998873 4444443333333333332
Q ss_pred cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH-
Q 005581 523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA- 601 (690)
Q Consensus 523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~- 601 (690)
.+ ..+.+++|+.++|+||+++||||++.+.+++.+
T Consensus 162 ---------------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 197 (262)
T PRK06144 162 ---------------------------------------AR-----VKDMLFTARLLEAEEALAAGLVNEVVEDAALDAR 197 (262)
T ss_pred ---------------------------------------HH-----HHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHH
Confidence 11 335578899999999999999999988766554
Q ss_pred ---HHHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHHHHHHHHHHhccCCcchhhhcCccchHH
Q 005581 602 ---IAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVDRTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 602 ---~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
.|++++..++. .+...|..+..... ............++.+.+..+|+++++....+.|
T Consensus 198 a~~~a~~i~~~~~~------a~~~~K~~l~~~~~---~~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 198 ADALAELLAAHAPL------TLRATKEALRRLRR---EGLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred HHHHHHHHHhCCHH------HHHHHHHHHHHhhh---cCHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 45555555431 00001111111111 1111111233445666777889999988665543
No 56
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.74 E-value=1e-17 Score=175.55 Aligned_cols=168 Identities=20% Similarity=0.204 Sum_probs=119.1
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcc-hHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-------------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSG-IIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------------- 448 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~-~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------------- 448 (690)
++.|++|+++.+-.. |..+. .+.++|.+.++++..|++||+|||+.. |.|++....
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (266)
T PRK09245 10 DGHIVTLTMNRPETR------NALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPAD 83 (266)
T ss_pred ECCEEEEEECCcccc------cCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchh
Confidence 368999999987652 34443 578899999999999999999999875 466654210
Q ss_pred --hHHH----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCce
Q 005581 449 --DLMW----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNK 517 (690)
Q Consensus 449 --~~i~----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~ 517 (690)
..+. +.+..+ ..+|||||.|+|+|.|||+.|+++||++||++.+.+|. +|+++.......+...+|
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG--- 160 (266)
T PRK09245 84 IRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG--- 160 (266)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh---
Confidence 0111 112222 34999999999999999999999999999999998873 555544433222222222
Q ss_pred eeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChH
Q 005581 518 EIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFS 597 (690)
Q Consensus 518 ~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~ 597 (690)
..| ..+.+++|+.++++||+++||||++...+
T Consensus 161 -------------------------------------------~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (266)
T PRK09245 161 -------------------------------------------MAR-----AAEMAFTGDAIDAATALEWGLVSRVVPAD 192 (266)
T ss_pred -------------------------------------------HHH-----HHHHHHcCCCcCHHHHHHcCCcceecCHH
Confidence 111 34557889999999999999999998876
Q ss_pred HHHHHH----HHHcCCCC
Q 005581 598 RAVAIA----KQKANIPE 611 (690)
Q Consensus 598 ~ai~~a----~~~a~l~~ 611 (690)
+..+.+ .+++..++
T Consensus 193 ~l~~~a~~~a~~l~~~~~ 210 (266)
T PRK09245 193 QLLPAARALAERIAANPP 210 (266)
T ss_pred HHHHHHHHHHHHHHhCCH
Confidence 655544 44555443
No 57
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.74 E-value=1.2e-17 Score=174.40 Aligned_cols=219 Identities=16% Similarity=0.118 Sum_probs=140.0
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------hH---
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------DL--- 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~~--- 450 (690)
++.|++|+++.+-. |..+..+.++|.++++++.+|++||+|||+.. |.|++.... ..
T Consensus 10 ~~~v~~itlnrp~~-------Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (258)
T PRK09076 10 DGHVAILTLNNPPA-------NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMAR 82 (258)
T ss_pred ECCEEEEEECCCCc-------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHH
Confidence 36899999998831 45566788999999999999999999999874 345654210 01
Q ss_pred -HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 451 -MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 451 -i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
+.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++. +|+++.......+..++|.
T Consensus 83 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~--------- 153 (258)
T PRK09076 83 RFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGE--------- 153 (258)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCH---------
Confidence 11223333 33999999999999999999999999999999998873 5555444333333333332
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH--
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI-- 602 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~-- 602 (690)
.| ..+.+++|+.++|+||+++||||++.+.++..+.
T Consensus 154 -------------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 191 (258)
T PRK09076 154 -------------------------------------GW-----AKRMILCGERVDAATALRIGLVEEVVEKGEAREAAL 191 (258)
T ss_pred -------------------------------------HH-----HHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHH
Confidence 11 3345678999999999999999999886655444
Q ss_pred --HHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 603 --AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 603 --a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
+.+++..++. .+...|..+..............+ .....++.+.+..+|+++++....++|
T Consensus 192 ~~a~~l~~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 255 (258)
T PRK09076 192 ALAQKVANQSPS------AVAACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQW 255 (258)
T ss_pred HHHHHHHhCCHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4555554431 000011111111110000111111 223445556677899999988765554
No 58
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.74 E-value=1.5e-17 Score=173.22 Aligned_cols=216 Identities=19% Similarity=0.179 Sum_probs=140.6
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----hHHH-HHHH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----DLMW-REIR 456 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----~~i~-~~I~ 456 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++.+|++||+|||+.. |.|++.... ...+ +.+.
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (254)
T PRK08252 10 RGRVLIITINRPEAR------NAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFG 83 (254)
T ss_pred ECCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHH
Confidence 368999999987642 45566788999999999999999999999874 466655320 0111 1111
Q ss_pred H---hcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhhhh
Q 005581 457 L---LSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVL 529 (690)
Q Consensus 457 ~---l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~ 529 (690)
. ...+|||||.|+|.|.|||+.|+++||++||++.+.++. +|+++.......+..++|.
T Consensus 84 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~-------------- 149 (254)
T PRK08252 84 GLTERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPY-------------- 149 (254)
T ss_pred HHHHhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCH--------------
Confidence 1 134899999999999999999999999999999998873 5555544433333333332
Q ss_pred hccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH----HH
Q 005581 530 AAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA----KQ 605 (690)
Q Consensus 530 ~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a----~~ 605 (690)
.| ..+.+++|+.++++||+++||||++.+.++.++.+ .+
T Consensus 150 --------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ 192 (254)
T PRK08252 150 --------------------------------HI-----AMELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAER 192 (254)
T ss_pred --------------------------------HH-----HHHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHH
Confidence 11 34557889999999999999999998866555544 44
Q ss_pred HcCCCCCCceEEEEecCCCCCHHHHHhcc-ccch---hcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 606 KANIPEDRQVTLVEMSKPSPTLPEILSSV-GNSI---AGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 606 ~a~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~---~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
++..++. .+.. ...++... ..+. ...+ .....++.+.+..+|+++++....+.|
T Consensus 193 l~~~~~~------a~~~----~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 193 IAANGPL------AVAA----SKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred HHhCCHH------HHHH----HHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 5444331 0000 11222111 0011 1111 122445566677899999987655443
No 59
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.74 E-value=1.5e-17 Score=173.68 Aligned_cols=219 Identities=15% Similarity=0.136 Sum_probs=140.0
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccC-----CCcchhhh---------hHHH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-----PGGDALAS---------DLMW 452 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinS-----pGG~~~as---------~~i~ 452 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++..|++||+|||+.+. .|++.... ...+
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (259)
T PRK06494 11 KGHVTIVTLNRPEVM------NALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGF 84 (259)
T ss_pred ECCEEEEEEcCcccc------CCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHH
Confidence 368999999988642 445667889999999999999999999998753 46654210 0011
Q ss_pred HHHH-HhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhh
Q 005581 453 REIR-LLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE 527 (690)
Q Consensus 453 ~~I~-~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~ 527 (690)
..+. .+.-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+.+++|.
T Consensus 85 ~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~------------ 152 (259)
T PRK06494 85 GGLTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGL------------ 152 (259)
T ss_pred HHHHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCH------------
Confidence 1122 1234999999999999999999999999999999999884 5555444333333222322
Q ss_pred hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHH----HHH
Q 005581 528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV----AIA 603 (690)
Q Consensus 528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai----~~a 603 (690)
. ...+.+++|+.++|+||+++||||++...++.. +.|
T Consensus 153 ----------------------------------~-----~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 193 (259)
T PRK06494 153 ----------------------------------K-----RAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWA 193 (259)
T ss_pred ----------------------------------H-----HHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHH
Confidence 1 133457889999999999999999998876544 455
Q ss_pred HHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH---HHHHHHHHhccCCcchhhhcCccchH
Q 005581 604 KQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD---RTLKELLQDLTFSDGVQARMDGILFQ 668 (690)
Q Consensus 604 ~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~g~qa~~~~~~~~ 668 (690)
++++..++. .+...|..+..............+ .....++.+.+..+|+++++....+.
T Consensus 194 ~~la~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~ 255 (259)
T PRK06494 194 DDILACSPL------SIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPR 255 (259)
T ss_pred HHHHhcCHH------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCC
Confidence 555555431 011111111111111000111111 12234455667789999998765444
No 60
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.74 E-value=1.2e-17 Score=175.16 Aligned_cols=219 Identities=14% Similarity=0.120 Sum_probs=139.1
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------hHHH-
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------DLMW- 452 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~~i~- 452 (690)
.+.|++|+++.+-.. |..+..+.++|.+.++++..|++||+|||+.+ |.|++.... ..+.
T Consensus 18 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 91 (266)
T PRK08139 18 RDGVATLTLNRPQAF------NALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFA 91 (266)
T ss_pred eCCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHH
Confidence 368999999987542 45566788999999999999999999999875 456655310 1111
Q ss_pred ---HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 453 ---REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 453 ---~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++..+. ..+...+|
T Consensus 92 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~-~~l~r~vG---------- 160 (266)
T PRK08139 92 RCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTPM-VALSRNVP---------- 160 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCccH-HHHHHHhC----------
Confidence 112222 33999999999999999999999999999999999873 454433221 11222222
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH--
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI-- 602 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~-- 602 (690)
..| ..+.+++|+.++++||+++||||++.+.++..+.
T Consensus 161 ------------------------------------~~~-----A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~ 199 (266)
T PRK08139 161 ------------------------------------RKQ-----AMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVA 199 (266)
T ss_pred ------------------------------------HHH-----HHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHH
Confidence 122 3455788999999999999999999987655554
Q ss_pred --HHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 603 --AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 603 --a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
+.+++..++. .+...|..+..............+ .....++.+.+..+|+++++....+.|
T Consensus 200 ~~a~~la~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK08139 200 RLAAVIAAKSPA------AVRIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEW 263 (266)
T ss_pred HHHHHHHhCCHH------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 4445554431 111111112111111000001111 122344556677899999988755543
No 61
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.74 E-value=1.3e-17 Score=174.37 Aligned_cols=218 Identities=21% Similarity=0.197 Sum_probs=141.8
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----h---HH---
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----D---LM--- 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----~---~i--- 451 (690)
++.|++|+++.+-.. |..+..+.++|.++++++.+|++||+|||+.. |.|++...- + ..
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (262)
T PRK07509 10 EDGIADVRLNRPDKM------NALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKR 83 (262)
T ss_pred eCCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhh
Confidence 368999999987643 45566788999999999999999999999874 466654210 0 00
Q ss_pred --------HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCcee
Q 005581 452 --------WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKE 518 (690)
Q Consensus 452 --------~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~ 518 (690)
.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++. +|+++.......+..++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~--- 160 (262)
T PRK07509 84 LPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRK--- 160 (262)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCH---
Confidence 1111112 23999999999999999999999999999999998873 4544433322222222221
Q ss_pred eecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccC--h
Q 005581 519 IISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGG--F 596 (690)
Q Consensus 519 ~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~--~ 596 (690)
.+ ..+.+++|+.++|+||+++||||++.+ .
T Consensus 161 -------------------------------------------~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 192 (262)
T PRK07509 161 -------------------------------------------DV-----ARELTYTARVFSAEEALELGLVTHVSDDPL 192 (262)
T ss_pred -------------------------------------------HH-----HHHHHHcCCCcCHHHHHHcCChhhhhchHH
Confidence 11 335567899999999999999999986 4
Q ss_pred HHHHHHHHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccch
Q 005581 597 SRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILF 667 (690)
Q Consensus 597 ~~ai~~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~ 667 (690)
+++.+.+++++..++.. +...|..+..............+ .....++.+.+..+|+.+++....+
T Consensus 193 ~~a~~~a~~l~~~~~~~------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p 258 (262)
T PRK07509 193 AAALALAREIAQRSPDA------IAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAP 258 (262)
T ss_pred HHHHHHHHHHHhCCHHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCC
Confidence 57778888888876521 11111112111111000111111 2224455666778899999876544
No 62
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.74 E-value=1.4e-17 Score=174.50 Aligned_cols=220 Identities=17% Similarity=0.103 Sum_probs=138.0
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCC-ceEEEEEcc----CCCcchhhh-------------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKR-YKAAIIRID----SPGGDALAS------------- 448 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~-VkaVVLrin----SpGG~~~as------------- 448 (690)
+++|++|+++.+-.. |..+..+.++|.+.++.+.+|++ ||+|||+.. |.|++....
T Consensus 11 ~~~i~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (266)
T PRK05981 11 DGGVAILTLDHPEVM------NAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDA 84 (266)
T ss_pred ECCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchh
Confidence 368999999987542 45566788999999999998765 999999975 456654320
Q ss_pred -hHH----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceec----cccccccccchHHHHHHcCCcee
Q 005581 449 -DLM----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNKE 518 (690)
Q Consensus 449 -~~i----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~G----SIGv~~~~~~~~~l~~klGi~~~ 518 (690)
..+ .+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++++.++ .+|+++.......+.
T Consensus 85 ~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~-------- 156 (266)
T PRK05981 85 GAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLP-------- 156 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHH--------
Confidence 111 1122223 3399999999999999999999999999999999876 244443332221121
Q ss_pred eecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHH
Q 005581 519 IISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSR 598 (690)
Q Consensus 519 ~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ 598 (690)
+.|...+ ..+.+++|+.++|+||+++||||++...++
T Consensus 157 --------------------------------------~~vg~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 193 (266)
T PRK05981 157 --------------------------------------RLVGKAR-----AMELSLLGEKLPAETALQWGLVNRVVDDAE 193 (266)
T ss_pred --------------------------------------HHhHHHH-----HHHHHHhCCCcCHHHHHHcCCceEeeCHhH
Confidence 2222111 345578899999999999999999998776
Q ss_pred HHHHHHHHc----CCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 599 AVAIAKQKA----NIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 599 ai~~a~~~a----~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
..+.+.+++ ..++. .+...|..+..............+ ......+.+.+..+|+++++....+.|
T Consensus 194 ~~~~a~~~a~~l~~~~~~------a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 194 LMAEAMKLAHELANGPTV------ALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred HHHHHHHHHHHHHcCCHH------HHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 655555544 43321 111111111111111000111111 122334556677899999998765543
No 63
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.74 E-value=3.7e-17 Score=165.15 Aligned_cols=163 Identities=19% Similarity=0.227 Sum_probs=134.4
Q ss_pred EEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECc
Q 005581 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (690)
Q Consensus 391 AvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g 470 (690)
.+|.+.|+|++ .+.+.+++.|..+...+..+.|+|+||||||++.++..|++.|+.. +.||++.+.|
T Consensus 36 r~I~l~g~I~~-----------~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~--~~~v~t~~~G 102 (207)
T PRK12553 36 RIIFLGGQVDD-----------ASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFI--RPDVQTVCTG 102 (207)
T ss_pred eEEEEcceECH-----------HHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhc--CCCcEEEEEe
Confidence 36899999984 4678999999999888778999999999999999999999999987 6799999999
Q ss_pred cccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581 471 VAASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA 548 (690)
Q Consensus 471 ~AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i 548 (690)
.|+|+|..|+++|| +++|.|+|.++........ ...| +..+.+.-.+.+
T Consensus 103 ~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~----------------~~~G-------------~a~d~~~~~~~l 153 (207)
T PRK12553 103 QAASAGAVLLAAGTPGKRFALPNARILIHQPSLGG----------------GIRG-------------QASDLEIQAREI 153 (207)
T ss_pred ehhhHHHHHHHcCCcCcEEECCCchhhhcCccccC----------------CCcc-------------CHHHHHHHHHHH
Confidence 99999999999999 5999999987754322000 0011 122333445567
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581 549 QNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG 595 (690)
Q Consensus 549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~ 595 (690)
+++.+.|.+.+++.+|++.+.++++.. +.+|||+||+++||||+|..
T Consensus 154 ~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~ 201 (207)
T PRK12553 154 LRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIIT 201 (207)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcC
Confidence 788888999999999999999998765 99999999999999999864
No 64
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.74 E-value=1.7e-17 Score=173.08 Aligned_cols=219 Identities=20% Similarity=0.183 Sum_probs=137.5
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------h---HH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------D---LM 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~---~i 451 (690)
++.|++|+++.|-. .|..+..+.++|.++|+++.+|+ +|+|||+.+ |.|++.... + .+
T Consensus 6 ~~~v~~itlnrp~~------~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T TIGR02280 6 EAGVARLTLNRPDK------LNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI 78 (256)
T ss_pred ECCEEEEEecCccc------ccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence 36899999998743 24556678999999999999999 999999875 355554210 0 11
Q ss_pred ----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581 452 ----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR 522 (690)
Q Consensus 452 ----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~ 522 (690)
.+.++.+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++. +|+++.......+...+|
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG-------- 150 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVG-------- 150 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhC--------
Confidence 1112223 33999999999999999999999999999999998772 444433322222222222
Q ss_pred cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581 523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI 602 (690)
Q Consensus 523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~ 602 (690)
..| ..+.+++|+.++|+||+++||||++.+.+++.+.
T Consensus 151 --------------------------------------~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 187 (256)
T TIGR02280 151 --------------------------------------RAR-----AMGLAMLGEKLDARTAASWGLIWQVVDDAALMDE 187 (256)
T ss_pred --------------------------------------HHH-----HHHHHHcCCCCCHHHHHHcCCcceeeChHHHHHH
Confidence 111 3455688999999999999999999987766555
Q ss_pred HHH----HcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 603 AKQ----KANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 603 a~~----~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
+.+ ++..++. .+...|..+..............+ .....++.+.+..+|+++++....+.|
T Consensus 188 a~~~a~~la~~~~~------~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 188 AQALAVHLAAQPTR------GLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF 253 (256)
T ss_pred HHHHHHHHHhCCHH------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence 544 4444431 000011111111110000001111 122445566677899999887665543
No 65
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.74 E-value=2.1e-17 Score=172.83 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=116.5
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------h----
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------D---- 449 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~---- 449 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++..|++||+|||+.. |.|++.... +
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (262)
T PRK05995 11 RGQVATVTLNRPDVR------NAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRAD 84 (262)
T ss_pred eCCEEEEEEcCcccc------cCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhH
Confidence 368999999987542 45566788999999999999999999999875 456654210 0
Q ss_pred --HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581 450 --LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR 522 (690)
Q Consensus 450 --~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~ 522 (690)
.+.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.... ..+.
T Consensus 85 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~-~~l~------------ 151 (262)
T PRK05995 85 ARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATIS-PYVI------------ 151 (262)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchH-HHHH------------
Confidence 112223333 34999999999999999999999999999999998874 444332211 1121
Q ss_pred cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581 523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI 602 (690)
Q Consensus 523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~ 602 (690)
.+|...| ..+.+++|+.++|+||+++||||++.+.++..+.
T Consensus 152 ----------------------------------~~vg~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 192 (262)
T PRK05995 152 ----------------------------------RAMGERA-----ARRYFLTAERFDAAEALRLGLVHEVVPAEALDAK 192 (262)
T ss_pred ----------------------------------HHhCHHH-----HHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHH
Confidence 2222222 3355788999999999999999999987665555
Q ss_pred HHHHc
Q 005581 603 AKQKA 607 (690)
Q Consensus 603 a~~~a 607 (690)
+.+++
T Consensus 193 a~~~a 197 (262)
T PRK05995 193 VDELL 197 (262)
T ss_pred HHHHH
Confidence 44443
No 66
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.74 E-value=1.9e-17 Score=173.17 Aligned_cols=219 Identities=18% Similarity=0.179 Sum_probs=137.4
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------h----H
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------D----L 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~----~ 450 (690)
++.|++|+++.+-. .|..+..+.++|.+.++++. |++||+|||+.. |.|++...- . .
T Consensus 11 ~~~v~~itlnrp~~------~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (262)
T PRK08140 11 EAGVATLTLNRPDK------LNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGES 83 (262)
T ss_pred ECCEEEEEecCCcc------cCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHH
Confidence 36899999998754 24556678899999999999 999999999875 456654210 0 1
Q ss_pred H---HH-HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeec
Q 005581 451 M---WR-EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS 521 (690)
Q Consensus 451 i---~~-~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~ 521 (690)
+ ++ .+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.++. +|+++.......+..++|
T Consensus 84 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG------- 156 (262)
T PRK08140 84 IETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVG------- 156 (262)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhC-------
Confidence 1 11 12223 34999999999999999999999999999999998762 444433322222222222
Q ss_pred ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH
Q 005581 522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA 601 (690)
Q Consensus 522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~ 601 (690)
..| ..+.+++|+.++++||+++||||++.+.+++.+
T Consensus 157 ---------------------------------------~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 192 (262)
T PRK08140 157 ---------------------------------------MAR-----ALGLALLGEKLSAEQAEQWGLIWRVVDDAALAD 192 (262)
T ss_pred ---------------------------------------HHH-----HHHHHHcCCCcCHHHHHHcCCccEeeChHHHHH
Confidence 111 335578899999999999999999998776555
Q ss_pred HHHH----HcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 602 IAKQ----KANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 602 ~a~~----~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
.+.+ ++..++. .+...|..+..............+ .....++.+.+..+|+++++....+.|
T Consensus 193 ~a~~~a~~ia~~~~~------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 193 EAQQLAAHLATQPTR------GLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred HHHHHHHHHHhCCHH------HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 5444 4444431 000111111111111000011111 122344556677888988887665543
No 67
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.73 E-value=1.7e-17 Score=173.34 Aligned_cols=216 Identities=17% Similarity=0.163 Sum_probs=139.6
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------hH----
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------DL---- 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~~---- 450 (690)
++.|++|+++.+-.. |..+..+.++|.+.|+++.+|++||+|||+.+ |.|++.... +.
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 83 (260)
T PRK07511 10 EGSTLVLTLSNPGAR------NALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAAS 83 (260)
T ss_pred ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHH
Confidence 468999999997542 44566788999999999999999999999875 456654210 01
Q ss_pred ---HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581 451 ---MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR 522 (690)
Q Consensus 451 ---i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~ 522 (690)
+.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++. +|+++.......+..++|.
T Consensus 84 ~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~------- 156 (260)
T PRK07511 84 IDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPR------- 156 (260)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCH-------
Confidence 11122222 23999999999999999999999999999999998873 4544433332222222221
Q ss_pred cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581 523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI 602 (690)
Q Consensus 523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~ 602 (690)
.+ ..+.+++|+.++++||+++||||++.+.++.++.
T Consensus 157 ---------------------------------------~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~ 192 (260)
T PRK07511 157 ---------------------------------------QL-----ATELLLEGKPISAERLHALGVVNRLAEPGQALAE 192 (260)
T ss_pred ---------------------------------------HH-----HHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHH
Confidence 11 3355788999999999999999999877655555
Q ss_pred HH----HHcCCCCCCceEEEEecCCCCCHHHHHhcc-ccc---hhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 603 AK----QKANIPEDRQVTLVEMSKPSPTLPEILSSV-GNS---IAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 603 a~----~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~-~~~---~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
+. +++..++.. +. ...+.+... ..+ ....+ .....++.+.+..+|+++++.+..+.|
T Consensus 193 a~~~a~~l~~~~~~~------~~----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~ 258 (260)
T PRK07511 193 ALALADQLAAGSPNA------LA----RIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY 258 (260)
T ss_pred HHHHHHHHHhCCHHH------HH----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence 44 444443210 00 011222111 111 11111 122445566677888998888766554
No 68
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.73 E-value=2e-17 Score=173.69 Aligned_cols=164 Identities=17% Similarity=0.176 Sum_probs=119.2
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh-------h---HH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS-------D---LM 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as-------~---~i 451 (690)
.+.|++|+++.+-.. |..+..+.++|.+.++++.+|++||+|||+.+ |.|++...- + .+
T Consensus 18 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~ 91 (269)
T PRK06127 18 TGGLGRITFNNPARH------NAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAY 91 (269)
T ss_pred ECCEEEEEecCCCcc------CCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHH
Confidence 368999999987542 45667788999999999999999999999885 346654310 1 11
Q ss_pred HH----HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581 452 WR----EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR 522 (690)
Q Consensus 452 ~~----~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~ 522 (690)
.+ .+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++. +|+++.......+...+|
T Consensus 92 ~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG-------- 163 (269)
T PRK06127 92 EQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVG-------- 163 (269)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhC--------
Confidence 11 12222 33999999999999999999999999999999998873 454444333322322222
Q ss_pred cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581 523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI 602 (690)
Q Consensus 523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~ 602 (690)
..| ..+.+++|+.++++||+++||||++.+.+++.+.
T Consensus 164 --------------------------------------~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~ 200 (269)
T PRK06127 164 --------------------------------------PSA-----AKDLFYTARRFDAAEALRIGLVHRVTAADDLETA 200 (269)
T ss_pred --------------------------------------HHH-----HHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHH
Confidence 111 3455788999999999999999999987776655
Q ss_pred HHHHc
Q 005581 603 AKQKA 607 (690)
Q Consensus 603 a~~~a 607 (690)
+.+++
T Consensus 201 a~~~a 205 (269)
T PRK06127 201 LADYA 205 (269)
T ss_pred HHHHH
Confidence 55544
No 69
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.73 E-value=1.4e-17 Score=175.83 Aligned_cols=225 Identities=14% Similarity=0.163 Sum_probs=139.7
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc------CCCcchhh------h----hH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID------SPGGDALA------S----DL 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin------SpGG~~~a------s----~~ 450 (690)
.+.|++|+++.+ . .|..+..+.++|.+.|+++.+|++||+|||+.+ |.|++... + ..
T Consensus 19 ~~~Va~itlnr~-~------~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~ 91 (278)
T PLN03214 19 PGGIAVVWLAKE-P------VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAE 91 (278)
T ss_pred CCCEEEEEECCC-C------CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHH
Confidence 367999999986 2 245566788999999999999999999999874 45555421 0 11
Q ss_pred HHH----HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccc-cccccchHHHHHHcCCceeee
Q 005581 451 MWR----EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGV-VTGKFNLGKLYEKIGFNKEII 520 (690)
Q Consensus 451 i~~----~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv-~~~~~~~~~l~~klGi~~~~i 520 (690)
+++ .+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+ ++.......+...+|
T Consensus 92 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G------ 165 (278)
T PLN03214 92 FWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVID------ 165 (278)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcC------
Confidence 211 12233 33999999999999999999999999999999998873 444 232222222222222
Q ss_pred cccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccChHHH
Q 005581 521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFSRA 599 (690)
Q Consensus 521 ~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a 599 (690)
.. ..+.+++|+.++++||+++||||++.+.++.
T Consensus 166 ----------------------------------------------~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l 199 (278)
T PLN03214 166 ----------------------------------------------RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAAL 199 (278)
T ss_pred ----------------------------------------------HHHHHHHHHcCCccCHHHHHHcCCCcEecChHHH
Confidence 22 3455788999999999999999999887665
Q ss_pred HHH----HHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHHHhhcc
Q 005581 600 VAI----AKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQRLEEVA 674 (690)
Q Consensus 600 i~~----a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~~~~~~ 674 (690)
.+. +.++++.++. .+...|..+...+..........+ ......+.+.+..+|+++++.++....= .
T Consensus 200 ~~~a~~~a~~l~~~~~~------a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~---~ 270 (278)
T PLN03214 200 MEAAASAMERALKLPSA------ARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKE---K 270 (278)
T ss_pred HHHHHHHHHHHHcCCHH------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc---c
Confidence 554 4445554431 111011111111110000011111 1112344566778999999986643322 3
Q ss_pred cCCch
Q 005581 675 CGNPI 679 (690)
Q Consensus 675 ~~~~~ 679 (690)
.+||.
T Consensus 271 ~~~~~ 275 (278)
T PLN03214 271 KQNPA 275 (278)
T ss_pred ccCcc
Confidence 45554
No 70
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.73 E-value=3.3e-17 Score=170.11 Aligned_cols=218 Identities=14% Similarity=0.115 Sum_probs=139.9
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----hH----HHH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----DL----MWR 453 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----~~----i~~ 453 (690)
++.|++|+++.+-.. |..+..+.++|.++++++..|++||+|||+.. |.|++.... .. +.+
T Consensus 7 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06072 7 REGYAIVTMSRPDKL------NALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYP 80 (248)
T ss_pred ECCEEEEEECCcccc------cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHH
Confidence 368999999987642 45566788999999999999999999999874 466665321 11 112
Q ss_pred HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhhh
Q 005581 454 EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAEV 528 (690)
Q Consensus 454 ~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~ 528 (690)
.+..+ ..+|||||.|+|.|+|||+.|+++||++||++.+.++. +|+++......
T Consensus 81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~--------------------- 139 (248)
T PRK06072 81 IIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAY--------------------- 139 (248)
T ss_pred HHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHH---------------------
Confidence 22223 23899999999999999999999999999999998762 33332211110
Q ss_pred hhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccC-hHHHHHHHHHHc
Q 005581 529 LAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGG-FSRAVAIAKQKA 607 (690)
Q Consensus 529 ~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~-~~~ai~~a~~~a 607 (690)
.+...+. ....+.+++|+.++|+||+++||||++.. .+++.+.|.+++
T Consensus 140 -------------------------~l~~~~g------~~a~~lll~g~~~~a~eA~~~Glv~~~~~~~~~a~~~a~~la 188 (248)
T PRK06072 140 -------------------------FLLKLTG------QRFYEILVLGGEFTAEEAERWGLLKISEDPLSDAEEMANRIS 188 (248)
T ss_pred -------------------------HHHHHhh------HHHHHHHHhCCccCHHHHHHCCCccccchHHHHHHHHHHHHH
Confidence 0111111 22445678899999999999999997643 457778888888
Q ss_pred CCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581 608 NIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ 668 (690)
Q Consensus 608 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~ 668 (690)
..|+. .+...|..+..............+ .....++.+.+..+|+++++....+.
T Consensus 189 ~~~~~------a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~ 244 (248)
T PRK06072 189 NGPFQ------SYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPK 244 (248)
T ss_pred hCCHH------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCC
Confidence 76642 111112222211111110111111 12234555667788999988765544
No 71
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.73 E-value=3.1e-17 Score=171.03 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=116.2
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------------hHH
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------------DLM 451 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------------~~i 451 (690)
+.|++|+++.+-. .|..+..+.++|.+.++++. ++||+|||+.+ |.|++.... ..+
T Consensus 10 ~~v~~itlnrp~~------~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 81 (255)
T PRK08150 10 GGVATIGLNRPAK------RNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRW 81 (255)
T ss_pred CCEEEEEEcCCcc------ccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 6799999998754 24556678899999999886 78999999985 456665320 111
Q ss_pred HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchh
Q 005581 452 WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYA 526 (690)
Q Consensus 452 ~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~ 526 (690)
.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+..++|.
T Consensus 82 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~----------- 150 (255)
T PRK08150 82 HRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGV----------- 150 (255)
T ss_pred HHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCH-----------
Confidence 2223333 23999999999999999999999999999999999883 5555444333333333332
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHH
Q 005581 527 EVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQK 606 (690)
Q Consensus 527 ~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~ 606 (690)
. ...+.+++|+.++|+||+++||||++...++.++.+.++
T Consensus 151 -----------------------------------~-----~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 190 (255)
T PRK08150 151 -----------------------------------A-----RMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMEL 190 (255)
T ss_pred -----------------------------------H-----HHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHH
Confidence 1 134557889999999999999999999866655554444
Q ss_pred c
Q 005581 607 A 607 (690)
Q Consensus 607 a 607 (690)
+
T Consensus 191 a 191 (255)
T PRK08150 191 A 191 (255)
T ss_pred H
Confidence 3
No 72
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.73 E-value=3.3e-17 Score=170.37 Aligned_cols=167 Identities=15% Similarity=0.141 Sum_probs=118.3
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----------hHHH
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----------DLMW 452 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----------~~i~ 452 (690)
+.|++|+++.+-. .|..+..+.++|.+.++++.+|++||+|||+.+ |.|++...- ..+.
T Consensus 14 ~~v~~itlnrp~~------~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 87 (251)
T PRK06023 14 PGVQVIRFNRPEK------KNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEIL 87 (251)
T ss_pred CcEEEEEecCccc------ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHH
Confidence 3599999998754 245566788999999999999999999999875 466664210 1122
Q ss_pred HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhh
Q 005581 453 REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE 527 (690)
Q Consensus 453 ~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~ 527 (690)
+.+..+ ..+|||||+|+|.|.|||+.|+++||++||++.+.++. +|+++.......+
T Consensus 88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l------------------ 149 (251)
T PRK06023 88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLA------------------ 149 (251)
T ss_pred HHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHH------------------
Confidence 223333 34999999999999999999999999999999999873 4443332211111
Q ss_pred hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH----HH
Q 005581 528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA----IA 603 (690)
Q Consensus 528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~----~a 603 (690)
...+...| ..+.+++|+.++++||+++||||++.+.+++.+ .|
T Consensus 150 ----------------------------~~~~g~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (251)
T PRK06023 150 ----------------------------PRLMGHQR-----AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAA 196 (251)
T ss_pred ----------------------------HHHHhHHH-----HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHH
Confidence 11111111 345567899999999999999999998765544 45
Q ss_pred HHHcCCCC
Q 005581 604 KQKANIPE 611 (690)
Q Consensus 604 ~~~a~l~~ 611 (690)
.+++..++
T Consensus 197 ~~l~~~~~ 204 (251)
T PRK06023 197 EELAAKPP 204 (251)
T ss_pred HHHHhCCH
Confidence 55555543
No 73
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.73 E-value=1.3e-16 Score=163.09 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=121.4
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------hHHH--
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------DLMW-- 452 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~~i~-- 452 (690)
++.|++|+++.+-. |..+..+.++|.+.++++.+|++||+|||+.. |.|++.... ..+.
T Consensus 15 ~~~i~~itlnrp~~-------Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 87 (222)
T PRK05869 15 DAGLATLLLSRPPT-------NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARV 87 (222)
T ss_pred cCCEEEEEECCCCC-------CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHH
Confidence 47899999998732 45566788999999999999999999999874 456654321 0111
Q ss_pred --HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581 453 --REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY 525 (690)
Q Consensus 453 --~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~ 525 (690)
+.+.++ .-+|||||.++|+|.|||+.|+++||++||.+.+.+|. +|+++.......+..++|.
T Consensus 88 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~---------- 157 (222)
T PRK05869 88 RQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGP---------- 157 (222)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCH----------
Confidence 122223 33999999999999999999999999999999998873 5555544433333333332
Q ss_pred hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHH
Q 005581 526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQ 605 (690)
Q Consensus 526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~ 605 (690)
. ...+.+++|+.++|+||+++||||++.+.+++.+.+.+
T Consensus 158 ------------------------------------~-----~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 196 (222)
T PRK05869 158 ------------------------------------S-----RAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAA 196 (222)
T ss_pred ------------------------------------H-----HHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHH
Confidence 1 13455788999999999999999999988877777766
Q ss_pred HcC
Q 005581 606 KAN 608 (690)
Q Consensus 606 ~a~ 608 (690)
++.
T Consensus 197 ~a~ 199 (222)
T PRK05869 197 WAR 199 (222)
T ss_pred HHH
Confidence 654
No 74
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.72 E-value=3.1e-17 Score=172.70 Aligned_cols=164 Identities=20% Similarity=0.261 Sum_probs=116.6
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------h----
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------D---- 449 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~---- 449 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++..|++||+|||+.+ |.|++.... +
T Consensus 20 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 93 (273)
T PRK07396 20 ADGIAKITINRPEVR------NAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPR 93 (273)
T ss_pred cCCEEEEEEcCCccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhh
Confidence 468999999987542 45566788999999999999999999999874 356654210 0
Q ss_pred -HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581 450 -LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG 523 (690)
Q Consensus 450 -~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g 523 (690)
...+.++.+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+.
T Consensus 94 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~------------- 160 (273)
T PRK07396 94 LNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLA------------- 160 (273)
T ss_pred hHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHH-------------
Confidence 011112222 34999999999999999999999999999999998874 34333322222222
Q ss_pred chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581 524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA 603 (690)
Q Consensus 524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a 603 (690)
..|...| ..+.+++|+.++++||+++||||++.+.+++.+.+
T Consensus 161 ---------------------------------~~vG~~~-----a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a 202 (273)
T PRK07396 161 ---------------------------------RIVGQKK-----AREIWFLCRQYDAQEALDMGLVNTVVPLADLEKET 202 (273)
T ss_pred ---------------------------------HHhhHHH-----HHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHH
Confidence 2222222 34557889999999999999999999877665554
Q ss_pred HHHc
Q 005581 604 KQKA 607 (690)
Q Consensus 604 ~~~a 607 (690)
.+++
T Consensus 203 ~~~a 206 (273)
T PRK07396 203 VRWC 206 (273)
T ss_pred HHHH
Confidence 4433
No 75
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.72 E-value=3.7e-17 Score=171.11 Aligned_cols=162 Identities=17% Similarity=0.161 Sum_probs=116.7
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------hH----HH-
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------DL----MW- 452 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~~----i~- 452 (690)
+.|++|+++.+-.. |..+..+.++|.++++++..|++||+|||+.+ |.|++.... +. .+
T Consensus 13 ~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07799 13 GHTLIVTMNRPEAR------NALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYD 86 (263)
T ss_pred CCEEEEEECCCccc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhh
Confidence 68999999987542 45667789999999999999999999999875 466655310 00 01
Q ss_pred ----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581 453 ----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG 523 (690)
Q Consensus 453 ----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g 523 (690)
+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+...+|.
T Consensus 87 ~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~-------- 158 (263)
T PRK07799 87 PSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPY-------- 158 (263)
T ss_pred hhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCH--------
Confidence 111112 34999999999999999999999999999999998873 5554433322222222221
Q ss_pred chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581 524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA 603 (690)
Q Consensus 524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a 603 (690)
.+ ..+.+++|+.++++||+++||||++.+.++..+.+
T Consensus 159 --------------------------------------~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a 195 (263)
T PRK07799 159 --------------------------------------TV-----ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKA 195 (263)
T ss_pred --------------------------------------HH-----HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHH
Confidence 11 34557889999999999999999998766554444
Q ss_pred HHH
Q 005581 604 KQK 606 (690)
Q Consensus 604 ~~~ 606 (690)
.++
T Consensus 196 ~~~ 198 (263)
T PRK07799 196 LEL 198 (263)
T ss_pred HHH
Confidence 443
No 76
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.72 E-value=4.6e-17 Score=169.89 Aligned_cols=220 Identities=15% Similarity=0.112 Sum_probs=136.2
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-------hHH----
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------DLM---- 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------~~i---- 451 (690)
++.|++|++++|-. |..+..+.++|.++++++.+|++||+|||+.+ |.|++.... +..
T Consensus 11 ~~~v~~itlnrp~~-------Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 83 (257)
T PRK06495 11 SDHVAVVTLDNPPV-------NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHN 83 (257)
T ss_pred eCCEEEEEECCCcc-------ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHH
Confidence 36799999999831 45566788999999999999999999999875 456655321 011
Q ss_pred ---HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhh
Q 005581 452 ---WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAE 527 (690)
Q Consensus 452 ---~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~ 527 (690)
.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|..- -++|+. |..
T Consensus 84 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe------------~~~Gl~------~~~-- 143 (257)
T PRK06495 84 RRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPE------------IDVGLA------GGG-- 143 (257)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChh------------hccCcc------ccH--
Confidence 1122223 3399999999999999999999999999999999877311 122221 000
Q ss_pred hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH----HH
Q 005581 528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA----IA 603 (690)
Q Consensus 528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~----~a 603 (690)
..+...|...| ..+.+++|+.++++||+++||||++.+.++..+ .+
T Consensus 144 -------------------------~~l~~~~g~~~-----a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a 193 (257)
T PRK06495 144 -------------------------KHAMRLFGHSL-----TRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIA 193 (257)
T ss_pred -------------------------HHHHHHhCHHH-----HHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHH
Confidence 00111122121 345578899999999999999999998765544 45
Q ss_pred HHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 604 KQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 604 ~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
.+++..++. .+...|..+..............+ ......+.+.+..+|+.+++....+.|
T Consensus 194 ~~l~~~~~~------a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 194 REIASKSPL------ATRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred HHHHhCCHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence 555555432 000111111111110000011111 122334555667789999888765553
No 77
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.72 E-value=4.7e-17 Score=169.61 Aligned_cols=163 Identities=20% Similarity=0.197 Sum_probs=116.2
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------h---HH
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------D---LM 451 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~---~i 451 (690)
+.|++|+++++-.. |..+..+.++|.+.++++..|+++|+|||+.+ |.|++.... . .+
T Consensus 10 ~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 83 (255)
T PRK07260 10 DDLATLTLNRPEVS------NGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKI 83 (255)
T ss_pred CCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHH
Confidence 67999999987542 45566788999999999999999999999875 456665310 0 01
Q ss_pred ----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581 452 ----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR 522 (690)
Q Consensus 452 ----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~ 522 (690)
.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++. +|+++.......+..++|
T Consensus 84 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg-------- 155 (255)
T PRK07260 84 AELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIG-------- 155 (255)
T ss_pred HHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhC--------
Confidence 1111222 23999999999999999999999999999999998773 444443322222221222
Q ss_pred cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581 523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI 602 (690)
Q Consensus 523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~ 602 (690)
..| ..+.+++|+.++|+||+++||||++.+.++..+.
T Consensus 156 --------------------------------------~~~-----a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~ 192 (255)
T PRK07260 156 --------------------------------------LNR-----ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKT 192 (255)
T ss_pred --------------------------------------HHH-----HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHH
Confidence 111 3455788999999999999999999987765555
Q ss_pred HHHHc
Q 005581 603 AKQKA 607 (690)
Q Consensus 603 a~~~a 607 (690)
+.+++
T Consensus 193 a~~~a 197 (255)
T PRK07260 193 CEQLL 197 (255)
T ss_pred HHHHH
Confidence 44433
No 78
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.72 E-value=3.2e-17 Score=170.34 Aligned_cols=167 Identities=19% Similarity=0.226 Sum_probs=118.0
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------------hH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------------DL 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------------~~ 450 (690)
.+.|++|+++.+-.. |..+..+.++|.+.++++.+|++||+|||+.. |.|++...- ..
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (249)
T PRK05870 10 DDGVALITVNDPDRR------NAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRR 83 (249)
T ss_pred cCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHH
Confidence 368999999986542 45566788999999999999999999999875 456654210 01
Q ss_pred HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581 451 MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY 525 (690)
Q Consensus 451 i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~ 525 (690)
+.+.+..+ .-+|||||.++|.|.|||+.|+++||++||++.+.++. +|+++.......+.+.+
T Consensus 84 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~------------ 151 (249)
T PRK05870 84 IYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAV------------ 151 (249)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhh------------
Confidence 12222233 34999999999999999999999999999999998773 45444332221121111
Q ss_pred hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccC--hHHHHHH
Q 005581 526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGG--FSRAVAI 602 (690)
Q Consensus 526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~--~~~ai~~ 602 (690)
... ..+.+++|+.++++||+++||||++.+ .+++.+.
T Consensus 152 ----------------------------------------G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~l~~~a~~~ 191 (249)
T PRK05870 152 ----------------------------------------GPQVARAALLFGMRFDAEAAVRHGLALMVADDPVAAALEL 191 (249)
T ss_pred ----------------------------------------CHHHHHHHHHhCCccCHHHHHHcCCHHHHHhhHHHHHHHH
Confidence 222 345567899999999999999999982 1245555
Q ss_pred HHHHcCCCC
Q 005581 603 AKQKANIPE 611 (690)
Q Consensus 603 a~~~a~l~~ 611 (690)
|.+++..++
T Consensus 192 a~~la~~~~ 200 (249)
T PRK05870 192 AAGPAAAPR 200 (249)
T ss_pred HHHHHhCCH
Confidence 666666554
No 79
>PLN02921 naphthoate synthase
Probab=99.72 E-value=4.7e-17 Score=175.13 Aligned_cols=219 Identities=16% Similarity=0.174 Sum_probs=139.0
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------hHH--
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------DLM-- 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~~i-- 451 (690)
++.|++|+++.+-. .|..+..+.++|.++++++..|++|++|||+.. |.|++.... +..
T Consensus 74 ~~~Va~ItLnrP~~------~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~ 147 (327)
T PLN02921 74 GEGIAKITINRPER------RNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGR 147 (327)
T ss_pred CCCEEEEEECCCCC------CCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHH
Confidence 37899999998754 245566788999999999999999999999874 456654210 000
Q ss_pred ---HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581 452 ---WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG 523 (690)
Q Consensus 452 ---~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g 523 (690)
.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+...+|
T Consensus 148 ~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG--------- 218 (327)
T PLN02921 148 LNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVG--------- 218 (327)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhC---------
Confidence 1112222 23999999999999999999999999999999999874 343333222222222222
Q ss_pred chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581 524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA 603 (690)
Q Consensus 524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a 603 (690)
..| ..+.+++|+.++|+||+++||||++...+++.+.+
T Consensus 219 -------------------------------------~~~-----A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a 256 (327)
T PLN02921 219 -------------------------------------QKK-----AREMWFLARFYTASEALKMGLVNTVVPLDELEGET 256 (327)
T ss_pred -------------------------------------HHH-----HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHH
Confidence 111 33556889999999999999999999877665554
Q ss_pred H----HHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 604 K----QKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 604 ~----~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
. +++..++. .+...|..+...... .......+ .....++.+.+..+|++|++.+..+.|
T Consensus 257 ~~~a~~la~~~p~------al~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f 320 (327)
T PLN02921 257 VKWCREILRNSPT------AIRVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDF 320 (327)
T ss_pred HHHHHHHHccCHH------HHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCC
Confidence 4 44454431 000011111111111 00111111 122334556677899999998766554
No 80
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.72 E-value=1.5e-16 Score=166.16 Aligned_cols=164 Identities=18% Similarity=0.227 Sum_probs=117.9
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh----------hHHH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS----------DLMW 452 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as----------~~i~ 452 (690)
.+.|++|+++.+-. .|..+..+.++|.+.|+++..|++||+|||+.. |.|+++... ..+.
T Consensus 11 ~~~va~Itlnrp~~------~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06190 11 HDRVRTLTLNRPEA------RNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALP 84 (258)
T ss_pred eCCEEEEEEcCCcc------cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHH
Confidence 36899999998754 245566788999999999999999999999875 466665320 0111
Q ss_pred HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhh
Q 005581 453 REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE 527 (690)
Q Consensus 453 ~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~ 527 (690)
+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.++. +|+++.......+..++|.
T Consensus 85 ~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~------------ 152 (258)
T PRK06190 85 NPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGI------------ 152 (258)
T ss_pred HHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCH------------
Confidence 222223 23999999999999999999999999999999998873 4544443222222222221
Q ss_pred hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHc
Q 005581 528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA 607 (690)
Q Consensus 528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a 607 (690)
. ...+.+++|+.++|+||+++||||++.+.++..+.+.+++
T Consensus 153 ----------------------------------~-----~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 193 (258)
T PRK06190 153 ----------------------------------G-----RARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLA 193 (258)
T ss_pred ----------------------------------H-----HHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHH
Confidence 1 1345568899999999999999999998766555554443
No 81
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.72 E-value=4.8e-17 Score=171.10 Aligned_cols=162 Identities=15% Similarity=0.144 Sum_probs=117.4
Q ss_pred cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------h--------H
Q 005581 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------D--------L 450 (690)
Q Consensus 389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~--------~ 450 (690)
.|++|+++.+-. .|..+..+.++|.+.|+++..|++||+|||+.+ |.|+++... + .
T Consensus 15 ~v~~itlnrp~~------~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 88 (272)
T PRK06210 15 GVAVITLNRPDR------LNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRP 88 (272)
T ss_pred CEEEEEeCCccc------ccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchh
Confidence 899999998754 245566788999999999999999999999875 456654310 0 0
Q ss_pred H--------HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceec----cccccccccchHHHHHHcCCce
Q 005581 451 M--------WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYEKIGFNK 517 (690)
Q Consensus 451 i--------~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~G----SIGv~~~~~~~~~l~~klGi~~ 517 (690)
+ .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.++ .+|+++.......+...+|
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig--- 165 (272)
T PRK06210 89 FVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVG--- 165 (272)
T ss_pred hhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhC---
Confidence 1 1112223 3499999999999999999999999999999999887 3555444322222211111
Q ss_pred eeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccCh
Q 005581 518 EIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGF 596 (690)
Q Consensus 518 ~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~ 596 (690)
.. ..+.+++|+.|+|+||+++||||++.+.
T Consensus 166 -------------------------------------------------~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 196 (272)
T PRK06210 166 -------------------------------------------------HANALDLLLSARTFYAEEALRLGLVNRVVPP 196 (272)
T ss_pred -------------------------------------------------HHHHHHHHHcCCccCHHHHHHcCCcceecCH
Confidence 22 3455788999999999999999999987
Q ss_pred HHHHHHHHHHcC
Q 005581 597 SRAVAIAKQKAN 608 (690)
Q Consensus 597 ~~ai~~a~~~a~ 608 (690)
+++.+.+.+++.
T Consensus 197 ~~l~~~a~~~a~ 208 (272)
T PRK06210 197 DELMERTLAYAE 208 (272)
T ss_pred HHHHHHHHHHHH
Confidence 776666555543
No 82
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.72 E-value=5.6e-17 Score=168.71 Aligned_cols=217 Identities=17% Similarity=0.202 Sum_probs=138.3
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----hHH----HHH
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----DLM----WRE 454 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----~~i----~~~ 454 (690)
+.|++|+++++ . .|..+..+.++|.+.+.++.+|+++|+|||+.+ |.|++.... ... .+.
T Consensus 9 ~~v~~itlnrp-~------~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 81 (251)
T TIGR03189 9 GKLLRLRLARP-K------ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKL 81 (251)
T ss_pred CCEEEEEeCCC-C------cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHH
Confidence 57999999998 2 145566788999999999999999999999875 466664320 011 122
Q ss_pred HHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhhhh
Q 005581 455 IRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVL 529 (690)
Q Consensus 455 I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~ 529 (690)
+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.. ....+..++|
T Consensus 82 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg--------------- 145 (251)
T TIGR03189 82 VIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMG--------------- 145 (251)
T ss_pred HHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhC---------------
Confidence 2223 33999999999999999999999999999999998874 4544321 1111222222
Q ss_pred hccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChH--HHHHH-HHHH
Q 005581 530 AAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFS--RAVAI-AKQK 606 (690)
Q Consensus 530 ~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~--~ai~~-a~~~ 606 (690)
..+ ..+.+++|+.++++||+++||||++.+.. ++++. ++++
T Consensus 146 -------------------------------~~~-----a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~~~a~~~~a~~l 189 (251)
T TIGR03189 146 -------------------------------RVA-----AEDLLYSGRSIDGAEGARIGLANAVAEDPENAALAWFDEHP 189 (251)
T ss_pred -------------------------------HHH-----HHHHHHcCCCCCHHHHHHCCCcceecCcHHHHHHHHHHHHH
Confidence 111 34557889999999999999999997632 44554 4667
Q ss_pred cCCCCCCceEEEEecCCCCCHHHHHhccccc-hhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 607 ANIPEDRQVTLVEMSKPSPTLPEILSSVGNS-IAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 607 a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
+..++. .+...|..+.......... ....+ .....++.+.+..+|+++++....+.|
T Consensus 190 a~~~p~------a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 248 (251)
T TIGR03189 190 AKLSAS------SLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALW 248 (251)
T ss_pred HhCCHH------HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCC
Confidence 776642 1111111111111110000 00011 122344556677899999988665543
No 83
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.72 E-value=1.8e-16 Score=165.35 Aligned_cols=218 Identities=19% Similarity=0.203 Sum_probs=137.8
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh-------h----H
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS-------D----L 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as-------~----~ 450 (690)
++.|++|+++.+-. .|..+..+.++|.+.++++..|++||+|||+.+ |.|++.... . .
T Consensus 9 ~~~v~~itlnrp~~------~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (256)
T TIGR03210 9 RNGIAWIMINRPAK------MNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLP 82 (256)
T ss_pred eCCEEEEEEcCCcc------ccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHH
Confidence 36899999998754 245566788999999999999999999999874 456665321 0 1
Q ss_pred HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581 451 MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY 525 (690)
Q Consensus 451 i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~ 525 (690)
+.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+...+|
T Consensus 83 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG----------- 151 (256)
T TIGR03210 83 MEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVG----------- 151 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhC-----------
Confidence 11122223 23999999999999999999999999999999999874 443322222222222222
Q ss_pred hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH--
Q 005581 526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA-- 603 (690)
Q Consensus 526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a-- 603 (690)
..| ..+.+++|+.++|+||+++||||++.+.+++.+.+
T Consensus 152 -----------------------------------~~~-----A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 191 (256)
T TIGR03210 152 -----------------------------------EKK-----AREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQK 191 (256)
T ss_pred -----------------------------------HHH-----HHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHH
Confidence 111 34557789999999999999999999877555544
Q ss_pred --HHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchH
Q 005581 604 --KQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQ 668 (690)
Q Consensus 604 --~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~ 668 (690)
++++..++. .+...|..+..... ........+ .....++.+.+..+|+.+++....+.
T Consensus 192 ~a~~ia~~~~~------a~~~~K~~l~~~~~-~~~~~~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~ 252 (256)
T TIGR03210 192 WCDEIVEKSPT------AIAIAKRSFNMDTA-HQRGIAGMGMYALKLYYDTAESREGVKAFQEKRKPE 252 (256)
T ss_pred HHHHHHhCCHH------HHHHHHHHHHHhhc-ccchHHHHHHHHHHHHccChhHHHHHHHHhccCCCC
Confidence 455554431 01111111111110 000011111 12233455566778888888765544
No 84
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.72 E-value=4.6e-17 Score=170.69 Aligned_cols=162 Identities=13% Similarity=0.057 Sum_probs=116.0
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------------
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------------- 448 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------------- 448 (690)
+.|++|+++.+-.. |..+..+.++|.++++++..|++||+|||+.+ |.|++....
T Consensus 14 ~~v~~itlnrp~~~------Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK05674 14 RGFATLWLSRADKN------NAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDA 87 (265)
T ss_pred CCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHH
Confidence 57999999987542 45566788999999999999999999999875 466654310
Q ss_pred hHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581 449 DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG 523 (690)
Q Consensus 449 ~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g 523 (690)
..+.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.... ..+.
T Consensus 88 ~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~-~~l~------------- 153 (265)
T PRK05674 88 RELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVIS-PFVV------------- 153 (265)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhH-HHHH-------------
Confidence 0112222333 33999999999999999999999999999999998873 444332211 1122
Q ss_pred chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581 524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA 603 (690)
Q Consensus 524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a 603 (690)
.+|...| ..+.+++|+.++|+||+++||||++.+.+++.+.+
T Consensus 154 ---------------------------------~~vG~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a 195 (265)
T PRK05674 154 ---------------------------------KAIGERA-----ARRYALTAERFDGRRARELGLLAESYPAAELEAQV 195 (265)
T ss_pred ---------------------------------HHhCHHH-----HHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHH
Confidence 2222222 34557889999999999999999999877655544
Q ss_pred HHHc
Q 005581 604 KQKA 607 (690)
Q Consensus 604 ~~~a 607 (690)
.+++
T Consensus 196 ~~~a 199 (265)
T PRK05674 196 EAWI 199 (265)
T ss_pred HHHH
Confidence 4433
No 85
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.71 E-value=5.7e-17 Score=169.25 Aligned_cols=164 Identities=19% Similarity=0.192 Sum_probs=116.8
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----------hHH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----------DLM 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----------~~i 451 (690)
++.|++|+++.+-. .|..+..+.++|.+.++++.+|+++|+|||+.+ |.|++...- ..+
T Consensus 12 ~~~v~~i~lnrp~~------~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (259)
T PRK06688 12 EDGVLTITINRPDK------KNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPV 85 (259)
T ss_pred ECCEEEEEecCccc------ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHH
Confidence 36799999998643 245566788999999999999999999999864 456654210 111
Q ss_pred HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchh
Q 005581 452 WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYA 526 (690)
Q Consensus 452 ~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~ 526 (690)
.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++++.+|. +|+++.......+..++|
T Consensus 86 ~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G------------ 153 (259)
T PRK06688 86 NRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIG------------ 153 (259)
T ss_pred HHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhh------------
Confidence 2222233 34999999999999999999999999999999998874 444433322222222222
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHH
Q 005581 527 EVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQK 606 (690)
Q Consensus 527 ~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~ 606 (690)
.. ...+.+++|+.++++||+++||||++.+.+++.+.+.++
T Consensus 154 ----------------------------------~~-----~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~ 194 (259)
T PRK06688 154 ----------------------------------RA-----RAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQ 194 (259)
T ss_pred ----------------------------------HH-----HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHH
Confidence 11 133456789999999999999999999876665555554
Q ss_pred c
Q 005581 607 A 607 (690)
Q Consensus 607 a 607 (690)
+
T Consensus 195 a 195 (259)
T PRK06688 195 A 195 (259)
T ss_pred H
Confidence 4
No 86
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.71 E-value=6.8e-17 Score=167.91 Aligned_cols=164 Identities=16% Similarity=0.103 Sum_probs=115.0
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------hHH-----
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------DLM----- 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~~i----- 451 (690)
++.|++|+++.+- .|..+..+.++|.+.++++..|++||+|||+.. |.|++.... +.+
T Consensus 9 ~~~v~~itlnrp~-------~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (249)
T PRK07938 9 EPGIAEVTVDYPP-------VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANR 81 (249)
T ss_pred CCCEEEEEECCCC-------cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHH
Confidence 5789999999872 145666788999999999999999999999875 467765321 111
Q ss_pred --HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhh
Q 005581 452 --WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEV 528 (690)
Q Consensus 452 --~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~ 528 (690)
.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++++.+|...+ ++|+. |..
T Consensus 82 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~------------~~G~~------g~~--- 140 (249)
T PRK07938 82 GCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEV------------DRGAL------GAA--- 140 (249)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccc------------eecCc------hhH---
Confidence 1122223 33999999999999999999999999999999998774211 11210 000
Q ss_pred hhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHc
Q 005581 529 LAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA 607 (690)
Q Consensus 529 ~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a 607 (690)
..+...|...+ ..+.+++|+.++|+||+++||||++.+.+++.+.+.+++
T Consensus 141 ------------------------~~l~~~vg~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 190 (249)
T PRK07938 141 ------------------------THLQRLVPQHL-----MRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVA 190 (249)
T ss_pred ------------------------HHHHHhcCHHH-----HHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHH
Confidence 00111111111 345568899999999999999999998776555555444
No 87
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.71 E-value=2.3e-16 Score=164.55 Aligned_cols=167 Identities=18% Similarity=0.151 Sum_probs=118.1
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------hHH--
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------DLM-- 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~~i-- 451 (690)
++.|++|+++.+-. .|..+..+.++|.++++++..|++||+|||+.. |.|++.... ..+
T Consensus 14 ~~~v~~itlnrp~~------~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 87 (256)
T PRK06143 14 DRGVATLTIRNAGS------LNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFIS 87 (256)
T ss_pred CCCEEEEEEcCCcc------cCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHH
Confidence 47899999998754 245667788999999999999999999999874 456654321 111
Q ss_pred --HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 452 --WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 452 --~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+ +..+....+...+|.
T Consensus 88 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~--------- 157 (256)
T PRK06143 88 RLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGW--------- 157 (256)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCH---------
Confidence 1122222 33999999999999999999999999999999998873 443 222111112112221
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH--
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI-- 602 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~-- 602 (690)
. ...+.+++|+.++|+||+++||||++.+.++..+.
T Consensus 158 -------------------------------------~-----~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 195 (256)
T PRK06143 158 -------------------------------------A-----RTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVE 195 (256)
T ss_pred -------------------------------------H-----HHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHH
Confidence 1 13445688999999999999999999987655544
Q ss_pred --HHHHcCCCC
Q 005581 603 --AKQKANIPE 611 (690)
Q Consensus 603 --a~~~a~l~~ 611 (690)
+.+++..++
T Consensus 196 ~~a~~la~~~~ 206 (256)
T PRK06143 196 RLAASLAGCGP 206 (256)
T ss_pred HHHHHHHcCCH
Confidence 455555543
No 88
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.71 E-value=4.7e-17 Score=170.15 Aligned_cols=164 Identities=18% Similarity=0.186 Sum_probs=115.4
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------hHH--
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------DLM-- 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~~i-- 451 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++ +|+++|+|||+.+ |.|+++... ..+
T Consensus 13 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (260)
T PRK07659 13 EGRVATIMLNRPEAL------NALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMN 85 (260)
T ss_pred eCCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHH
Confidence 368999999987542 455667889999999999 6899999999875 456655320 111
Q ss_pred --HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 452 --WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 452 --~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+.+++|
T Consensus 86 ~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg---------- 155 (260)
T PRK07659 86 TISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVG---------- 155 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcC----------
Confidence 1112222 23999999999999999999999999999999998773 444443332222222222
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccChHHH----
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFSRA---- 599 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a---- 599 (690)
.. ..+.+++|+.++++||+++||||++. .++.
T Consensus 156 ------------------------------------------~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a 192 (260)
T PRK07659 156 ------------------------------------------ENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAA 192 (260)
T ss_pred ------------------------------------------HHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHH
Confidence 22 33556789999999999999999998 5554
Q ss_pred HHHHHHHcCCC
Q 005581 600 VAIAKQKANIP 610 (690)
Q Consensus 600 i~~a~~~a~l~ 610 (690)
.+.+.+++..+
T Consensus 193 ~~~a~~l~~~~ 203 (260)
T PRK07659 193 KQKISEWLQKP 203 (260)
T ss_pred HHHHHHHHhCC
Confidence 44455555544
No 89
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.71 E-value=1.9e-16 Score=166.87 Aligned_cols=164 Identities=20% Similarity=0.222 Sum_probs=119.2
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------h----H
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------D----L 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~----~ 450 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++..|++||+|||+.+ |.|++.... . .
T Consensus 15 ~~~va~itlnrp~~~------Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (275)
T PRK09120 15 EDGIAWVTLNRPEKR------NAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQER 88 (275)
T ss_pred ECCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHH
Confidence 368999999997642 45566788999999999999999999999875 456654310 0 0
Q ss_pred H----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeec
Q 005581 451 M----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS 521 (690)
Q Consensus 451 i----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~ 521 (690)
+ .+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++++.+|. +|+++.......+..++|.
T Consensus 89 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~------ 162 (275)
T PRK09120 89 IRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGH------ 162 (275)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCH------
Confidence 1 1112222 34999999999999999999999999999999999873 5555544333333333332
Q ss_pred ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH
Q 005581 522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA 601 (690)
Q Consensus 522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~ 601 (690)
.| ..+.+++|+.++++||+++||||++...++..+
T Consensus 163 ----------------------------------------~~-----a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~ 197 (275)
T PRK09120 163 ----------------------------------------RD-----ALYYIMTGETFTGRKAAEMGLVNESVPLAQLRA 197 (275)
T ss_pred ----------------------------------------HH-----HHHHHhcCCccCHHHHHHcCCcceecCHHHHHH
Confidence 11 334568899999999999999999998776655
Q ss_pred HHHHHc
Q 005581 602 IAKQKA 607 (690)
Q Consensus 602 ~a~~~a 607 (690)
.+.+++
T Consensus 198 ~a~~~a 203 (275)
T PRK09120 198 RTRELA 203 (275)
T ss_pred HHHHHH
Confidence 555444
No 90
>PLN02888 enoyl-CoA hydratase
Probab=99.71 E-value=2.7e-16 Score=164.83 Aligned_cols=164 Identities=20% Similarity=0.194 Sum_probs=116.8
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhhh-----HH----HH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALASD-----LM----WR 453 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as~-----~i----~~ 453 (690)
++.|++|+++.+-. .|..+..+.++|.++++++.+|++||+|||+.. |.|++..... .. .+
T Consensus 17 ~~~v~~itlnrp~~------~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 90 (265)
T PLN02888 17 RNGIATITINRPKA------LNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETD 90 (265)
T ss_pred cCCEEEEEEcCCCc------ccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHH
Confidence 36799999998743 245566788999999999999999999999875 4666653110 01 11
Q ss_pred HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhhh
Q 005581 454 EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAEV 528 (690)
Q Consensus 454 ~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~ 528 (690)
.+..+ ..+|||||.|+|.|.|||+.|+++||++||++++.++. +|+++.......+...+|
T Consensus 91 ~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG-------------- 156 (265)
T PLN02888 91 PVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIG-------------- 156 (265)
T ss_pred HHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhC--------------
Confidence 22222 33999999999999999999999999999999998774 343333222222222222
Q ss_pred hhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHc
Q 005581 529 LAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA 607 (690)
Q Consensus 529 ~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a 607 (690)
..| ..+.+++|+.++++||+++||||++.+.++..+.+.+++
T Consensus 157 --------------------------------~~~-----a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (265)
T PLN02888 157 --------------------------------ANR-----AREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVA 198 (265)
T ss_pred --------------------------------HHH-----HHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHH
Confidence 111 345578899999999999999999998766555554444
No 91
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.71 E-value=2.3e-16 Score=168.03 Aligned_cols=164 Identities=24% Similarity=0.233 Sum_probs=117.3
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------------- 448 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------------- 448 (690)
++.|++|+++.+-. .|..+..+.++|.++|+++..|++||+|||+.+ |.|+++...
T Consensus 11 ~~~v~~itlnrp~~------~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (296)
T PRK08260 11 ADGIATITLNRPDK------LNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVE 84 (296)
T ss_pred eCCEEEEEeCCCcc------cCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccc
Confidence 36899999998754 245566788999999999999999999999875 466654310
Q ss_pred -----------hHHHH----HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHH
Q 005581 449 -----------DLMWR----EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGK 508 (690)
Q Consensus 449 -----------~~i~~----~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~ 508 (690)
..+.+ .+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~ 164 (296)
T PRK08260 85 ADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWF 164 (296)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhh
Confidence 01111 12222 23999999999999999999999999999999998873 444433322211
Q ss_pred HHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcC
Q 005581 509 LYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRG 588 (690)
Q Consensus 509 l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~G 588 (690)
+...+| ..| ..+.+++|+.++|+||+++|
T Consensus 165 l~r~vG----------------------------------------------~~~-----A~~llltg~~~~a~eA~~~G 193 (296)
T PRK08260 165 LPRLVG----------------------------------------------LQT-----ALEWVYSGRVFDAQEALDGG 193 (296)
T ss_pred HHHhhC----------------------------------------------HHH-----HHHHHHcCCccCHHHHHHCC
Confidence 211122 111 34567889999999999999
Q ss_pred CcccccChHHHHHHHHHHc
Q 005581 589 LVDALGGFSRAVAIAKQKA 607 (690)
Q Consensus 589 LVD~ig~~~~ai~~a~~~a 607 (690)
|||++...++.++.+.+++
T Consensus 194 Lv~~vv~~~~l~~~a~~~a 212 (296)
T PRK08260 194 LVRSVHPPDELLPAARALA 212 (296)
T ss_pred CceeecCHHHHHHHHHHHH
Confidence 9999998776655555443
No 92
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.71 E-value=9.5e-17 Score=171.00 Aligned_cols=165 Identities=19% Similarity=0.147 Sum_probs=115.6
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhh-h-------------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA-S------------- 448 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~a-s------------- 448 (690)
++.|++|+++.|-.. |..+..+.++|.++++++..|++||+|||+.+ |.|+++.. .
T Consensus 12 ~~~Va~ItLnrP~~~------NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~ 85 (298)
T PRK12478 12 AGPVATITLNRPEQL------NTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRW 85 (298)
T ss_pred cCCEEEEEecCCccc------CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccccccc
Confidence 478999999998653 55667789999999999999999999999875 46666531 0
Q ss_pred ---hHH----------HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcC
Q 005581 449 ---DLM----------WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIG 514 (690)
Q Consensus 449 ---~~i----------~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klG 514 (690)
..+ .+.+..+ ..+|||||.|+|+|+|||+.|+++||++||++.+.+|.--+-- +|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l-----------~G 154 (298)
T PRK12478 86 DPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRM-----------WG 154 (298)
T ss_pred CchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEecccccc-----------cc
Confidence 000 0112222 3499999999999999999999999999999999887421100 01
Q ss_pred CceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCccccc
Q 005581 515 FNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALG 594 (690)
Q Consensus 515 i~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig 594 (690)
+.. + . . +..+|...| ..+.+++|+.++|+||+++||||++.
T Consensus 155 ~~~-----~-----~---------------------~---~~~~vG~~~-----A~~llltg~~i~A~eA~~~GLV~~vv 195 (298)
T PRK12478 155 AYL-----T-----G---------------------M---WLYRLSLAK-----VKWHSLTGRPLTGVQAAEAELINEAV 195 (298)
T ss_pred CCc-----h-----h---------------------H---HHHHhhHHH-----HHHHHHcCCccCHHHHHHcCCcceec
Confidence 100 0 0 0 001122222 44667889999999999999999999
Q ss_pred ChHHHHHHHHHHc
Q 005581 595 GFSRAVAIAKQKA 607 (690)
Q Consensus 595 ~~~~ai~~a~~~a 607 (690)
..+++.+.+.+++
T Consensus 196 ~~~~l~~~a~~~a 208 (298)
T PRK12478 196 PFERLEARVAEVA 208 (298)
T ss_pred CHHHHHHHHHHHH
Confidence 8766555544443
No 93
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.70 E-value=9.2e-17 Score=167.48 Aligned_cols=216 Identities=13% Similarity=0.116 Sum_probs=137.9
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhh--h------------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA--S------------ 448 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~a--s------------ 448 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++. ++||+|||+.+ |.|++... .
T Consensus 11 ~~~i~~itlnrp~~~------Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK07112 11 QGDVCFLQLHRPEAQ------NTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDA 82 (255)
T ss_pred eCCEEEEEEcCCCcc------CCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhH
Confidence 368999999987542 4455677899999999887 36999999864 46665531 0
Q ss_pred hHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581 449 DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG 523 (690)
Q Consensus 449 ~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g 523 (690)
..+.+.++.+ ..+|||||+|+|.|.|||+.|+++||++||++.+.+|. +|+++.. ....+..++|
T Consensus 83 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg--------- 152 (255)
T PRK07112 83 EPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPAC-VLPFLIRRIG--------- 152 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcch-hhHHHHHHhC---------
Confidence 0012223333 34999999999999999999999999999999998873 4443321 1111222222
Q ss_pred chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHH--HHH
Q 005581 524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSR--AVA 601 (690)
Q Consensus 524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~--ai~ 601 (690)
..+ ..+.+++|+.++++||+++||||++.+.++ +.+
T Consensus 153 -------------------------------------~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~~ 190 (255)
T PRK07112 153 -------------------------------------TQK-----AHYMTLMTQPVTAQQAFSWGLVDAYGANSDTLLRK 190 (255)
T ss_pred -------------------------------------HHH-----HHHHHHhCCcccHHHHHHcCCCceecCcHHHHHHH
Confidence 222 335578899999999999999999987543 566
Q ss_pred HHHHHcCCCCCCceEEEEecCCCCCHHHHHhccccchhcHH-HHHHHHHHhccCCcchhhhcCccchHH
Q 005581 602 IAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVGNSIAGVD-RTLKELLQDLTFSDGVQARMDGILFQR 669 (690)
Q Consensus 602 ~a~~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~qa~~~~~~~~~ 669 (690)
.+++++..++. .+...|..+........ .....+ ......+.+.+..+|+++++.+..+.|
T Consensus 191 ~a~~l~~~~p~------a~~~~K~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 252 (255)
T PRK07112 191 HLLRLRCLNKA------AVARYKSYASTLDDTVA-AARPAALAANIEMFADPENLRKIARYVETGKFPW 252 (255)
T ss_pred HHHHHHhCCHH------HHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCC
Confidence 67777777652 11111222221111100 011111 122445566777899999998765544
No 94
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.70 E-value=2.8e-16 Score=163.31 Aligned_cols=162 Identities=20% Similarity=0.237 Sum_probs=116.8
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh------h------H
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS------D------L 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as------~------~ 450 (690)
.+.|++|+++++-. .|..+..+.++|.+.++++..|++||+|||+.+ |.|++.... + .
T Consensus 12 ~~~v~~i~ln~p~~------~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (249)
T PRK07110 12 EEGIAQVTMQDRVN------KNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEAN 85 (249)
T ss_pred eCCEEEEEecCCCc------cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHH
Confidence 36799999998754 245566788999999999999999999999875 466654321 1 1
Q ss_pred HHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchh
Q 005581 451 MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYA 526 (690)
Q Consensus 451 i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~ 526 (690)
++..+. .-+|||||.++|.|.|||+.|+++||++||++.+.++. +|+++.......+.+
T Consensus 86 ~~~~l~--~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~--------------- 148 (249)
T PRK07110 86 LYSLAL--NCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPE--------------- 148 (249)
T ss_pred HHHHHH--cCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHH---------------
Confidence 222233 33999999999999999999999999999999998763 444333322222221
Q ss_pred hhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHH
Q 005581 527 EVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQK 606 (690)
Q Consensus 527 ~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~ 606 (690)
++...+ ..+.+++|+.++++||+++||||++...++..+.+.++
T Consensus 149 -------------------------------~~g~~~-----a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 192 (249)
T PRK07110 149 -------------------------------KLGLAL-----GQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALEL 192 (249)
T ss_pred -------------------------------HhCHHH-----HHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHH
Confidence 221111 44567889999999999999999999866655555544
Q ss_pred c
Q 005581 607 A 607 (690)
Q Consensus 607 a 607 (690)
+
T Consensus 193 a 193 (249)
T PRK07110 193 A 193 (249)
T ss_pred H
Confidence 3
No 95
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.70 E-value=2.8e-16 Score=164.39 Aligned_cols=162 Identities=20% Similarity=0.273 Sum_probs=116.3
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc------CCCcchhhh-----------h
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID------SPGGDALAS-----------D 449 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin------SpGG~~~as-----------~ 449 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++.+|+ ||+|||+.+ |.|++.... +
T Consensus 11 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (261)
T PRK11423 11 INKIATITFNNPAKR------NALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDD 83 (261)
T ss_pred ECCEEEEEEcCcccc------CCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHH
Confidence 378999999997542 4556678899999999999888 999999864 456654221 1
Q ss_pred HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 450 LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 450 ~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
.+.+.++.+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+.+.......
T Consensus 84 ~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~---------------- 147 (261)
T PRK11423 84 PLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILN---------------- 147 (261)
T ss_pred HHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHH----------------
Confidence 112222333 23999999999999999999999999999999998873 444333222222
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK 604 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~ 604 (690)
|.++|...| ..+.+++|+.++|+||+++||||++.+.+++.+.+.
T Consensus 148 ------------------------------l~~~vg~~~-----a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~ 192 (261)
T PRK11423 148 ------------------------------FTNDAGFHI-----VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTL 192 (261)
T ss_pred ------------------------------HHHHhHHHH-----HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHH
Confidence 222333222 445678899999999999999999998776555444
Q ss_pred HH
Q 005581 605 QK 606 (690)
Q Consensus 605 ~~ 606 (690)
++
T Consensus 193 ~~ 194 (261)
T PRK11423 193 QM 194 (261)
T ss_pred HH
Confidence 43
No 96
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.70 E-value=3.2e-16 Score=165.23 Aligned_cols=168 Identities=24% Similarity=0.198 Sum_probs=118.1
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------------- 448 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------------- 448 (690)
++.|++|+++.+-. .|..+..+.++|.+.++++.+|++||+|||+.+ |.|+++...
T Consensus 17 ~~~v~~itlnrp~~------~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 90 (276)
T PRK05864 17 RPEIALITLNRPER------MNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTY 90 (276)
T ss_pred cCCEEEEEecCCcc------ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhH
Confidence 36899999998743 245566788999999999999999999999875 466655321
Q ss_pred -----hHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----cccccc-ccchHHHHHHcCCce
Q 005581 449 -----DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTG-KFNLGKLYEKIGFNK 517 (690)
Q Consensus 449 -----~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~-~~~~~~l~~klGi~~ 517 (690)
..+.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++. +|+.+. ......+.+.+|
T Consensus 91 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG--- 167 (276)
T PRK05864 91 ALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIG--- 167 (276)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhC---
Confidence 0011122222 34999999999999999999999999999999998873 454431 111111111111
Q ss_pred eeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChH
Q 005581 518 EIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFS 597 (690)
Q Consensus 518 ~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~ 597 (690)
.. ...+.+++|+.++|+||+++||||++...+
T Consensus 168 -------------------------------------------~~-----~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 199 (276)
T PRK05864 168 -------------------------------------------SS-----RAFEIMLTGRDVDAEEAERIGLVSRQVPDE 199 (276)
T ss_pred -------------------------------------------HH-----HHHHHHHcCCccCHHHHHHcCCcceeeCHH
Confidence 11 134567889999999999999999998876
Q ss_pred HHH----HHHHHHcCCCC
Q 005581 598 RAV----AIAKQKANIPE 611 (690)
Q Consensus 598 ~ai----~~a~~~a~l~~ 611 (690)
+.. +.|.+++..++
T Consensus 200 ~l~~~a~~~a~~la~~~p 217 (276)
T PRK05864 200 QLLDTCYAIAARMAGFSR 217 (276)
T ss_pred HHHHHHHHHHHHHHhCCH
Confidence 654 44555555543
No 97
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.69 E-value=4.4e-16 Score=163.51 Aligned_cols=163 Identities=18% Similarity=0.190 Sum_probs=116.7
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh----------hHHH-
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS----------DLMW- 452 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as----------~~i~- 452 (690)
+.|++|+++.+-. .|..+..+.++|.+.++++..|++||+|||+.. |.|++.... ...+
T Consensus 20 ~~v~~itlnrp~~------~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 93 (268)
T PRK07327 20 PGVLEIVLNGPGA------LNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWR 93 (268)
T ss_pred CCEEEEEEcCCCc------cCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHH
Confidence 6799999998753 245566788999999999999999999999875 456654210 0111
Q ss_pred ---HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 453 ---REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 453 ---~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++++.++. +|+++.......+...+|.
T Consensus 94 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~--------- 164 (268)
T PRK07327 94 EARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGM--------- 164 (268)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCH---------
Confidence 122222 33999999999999999999999999999999998873 4544433322222222221
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK 604 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~ 604 (690)
. ...+.+++|+.++|+||+++||||++.+.++..+.+.
T Consensus 165 -------------------------------------~-----~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 202 (268)
T PRK07327 165 -------------------------------------A-----KAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKAL 202 (268)
T ss_pred -------------------------------------H-----HHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHH
Confidence 1 1344578899999999999999999998776555554
Q ss_pred HHc
Q 005581 605 QKA 607 (690)
Q Consensus 605 ~~a 607 (690)
+++
T Consensus 203 ~~a 205 (268)
T PRK07327 203 EVA 205 (268)
T ss_pred HHH
Confidence 443
No 98
>PRK08321 naphthoate synthase; Validated
Probab=99.69 E-value=1.3e-16 Score=170.18 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=116.6
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----------CCCcchhhh--------
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----------SPGGDALAS-------- 448 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----------SpGG~~~as-------- 448 (690)
+.|++|+++.+-.. |..+..+.++|.++++++..|++||+|||+.+ |.|++....
T Consensus 33 ~~va~itlnrP~~~------Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~ 106 (302)
T PRK08321 33 QGTVRIAFDRPEVR------NAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYA 106 (302)
T ss_pred CCEEEEEeCCcccc------cCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcccccccc
Confidence 67999999998542 45566788999999999999999999999864 466654210
Q ss_pred --------h--HH-----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEe-cCceecc----ccccccccchH
Q 005581 449 --------D--LM-----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAE-NLTLTGS----IGVVTGKFNLG 507 (690)
Q Consensus 449 --------~--~i-----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~-p~t~~GS----IGv~~~~~~~~ 507 (690)
+ .. .+..+.+ .-+|||||.|+|.|.|||+.|+++||++||+ +.+.++- +|+++......
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~ 186 (302)
T PRK08321 107 EGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSA 186 (302)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHH
Confidence 0 00 0112223 2389999999999999999999999999999 5787763 34333322222
Q ss_pred HHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHc
Q 005581 508 KLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASR 587 (690)
Q Consensus 508 ~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~ 587 (690)
.+.+++| ..| ..+.+++|+.++|+||+++
T Consensus 187 ~L~r~vG----------------------------------------------~~~-----A~~l~ltG~~~~A~eA~~~ 215 (302)
T PRK08321 187 YLARQVG----------------------------------------------QKF-----AREIFFLGRTYSAEEAHDM 215 (302)
T ss_pred HHHHHhC----------------------------------------------HHH-----HHHHHHcCCccCHHHHHHC
Confidence 2222222 111 3456788999999999999
Q ss_pred CCcccccChHHHHH----HHHHHcCCC
Q 005581 588 GLVDALGGFSRAVA----IAKQKANIP 610 (690)
Q Consensus 588 GLVD~ig~~~~ai~----~a~~~a~l~ 610 (690)
||||++...+++.+ .|.+++..+
T Consensus 216 GLv~~vv~~~~l~~~a~~~a~~la~~~ 242 (302)
T PRK08321 216 GAVNAVVPHAELETEALEWAREINGKS 242 (302)
T ss_pred CCceEeeCHHHHHHHHHHHHHHHHhCC
Confidence 99999998765544 445555544
No 99
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.69 E-value=4.7e-16 Score=153.85 Aligned_cols=164 Identities=20% Similarity=0.219 Sum_probs=134.8
Q ss_pred EEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECccc
Q 005581 393 IRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVA 472 (690)
Q Consensus 393 I~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~A 472 (690)
|.+.|+|.+. +.+.++.+|..++.++..|-|.|.||||||++++...||+.++.. ++||.+.+-|.|
T Consensus 30 I~l~g~I~~~-----------~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~i--k~~V~ti~~G~A 96 (200)
T COG0740 30 IFLGGEIEDH-----------MANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI--KPPVSTICMGQA 96 (200)
T ss_pred EEEeeeechH-----------HHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhc--CCCeEEEEecHH
Confidence 9999999852 467888999999988889999999999999999999999999988 899999999999
Q ss_pred cHHHHHHHHhcCeE--EEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHH
Q 005581 473 ASGGYYMAMAAGTI--LAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQN 550 (690)
Q Consensus 473 aSGGy~iA~aaD~I--~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~ 550 (690)
||.|..|++++++. ++.|++.+-.....++. .|.. .+.+.-.+.+..
T Consensus 97 aSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~------------------~G~a-------------~Di~i~A~ei~~ 145 (200)
T COG0740 97 ASMGSVLLMAGDKGKRFALPNARIMIHQPSGGA------------------QGQA-------------SDIEIHAREILK 145 (200)
T ss_pred HhHHHHHHhcCCCCCceeCCCceEEEecCCccC------------------ccCH-------------HHHHHHHHHHHH
Confidence 99999999999986 99999986433222111 1222 234455566666
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccChHHHH
Q 005581 551 AYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGGFSRAV 600 (690)
Q Consensus 551 ~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~~~~ai 600 (690)
+.+...+..+++.|.+.++++...+ ..+++|+||+++||||+|....++.
T Consensus 146 ~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~ 196 (200)
T COG0740 146 IKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAA 196 (200)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccccc
Confidence 6677777779999999999988777 8888999999999999998765443
No 100
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=99.69 E-value=4e-16 Score=162.83 Aligned_cols=164 Identities=23% Similarity=0.227 Sum_probs=123.3
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhhh---------HHH--
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALASD---------LMW-- 452 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as~---------~i~-- 452 (690)
+.|++|+++.+-.. |..+..+.++|.++++++..|++||+|||+.+ |.|+++.... ...
T Consensus 13 ~~v~~itlnrp~~~------Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 86 (257)
T COG1024 13 DGIAVITLNRPEKL------NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQP 86 (257)
T ss_pred CCEEEEEecCcccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhH
Confidence 44999999998763 45667789999999999999999999999875 5677654310 111
Q ss_pred --HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581 453 --REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY 525 (690)
Q Consensus 453 --~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~ 525 (690)
+.++.+ ..+|||||+|+|+|.|||+.|+++||++||++++.+|. +|++|+......+...+|.
T Consensus 87 ~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~---------- 156 (257)
T COG1024 87 GQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGR---------- 156 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCH----------
Confidence 123333 33999999999999999999999999999999999984 6777655434333333332
Q ss_pred hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccCh-HHHHHHHH
Q 005581 526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGF-SRAVAIAK 604 (690)
Q Consensus 526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~-~~ai~~a~ 604 (690)
. ...+.+++|+.++++||+++||||++... +++++.+.
T Consensus 157 ------------------------------------~-----~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~ 195 (257)
T COG1024 157 ------------------------------------G-----RAKELLLTGEPISAAEALELGLVDEVVPDAEELLERAL 195 (257)
T ss_pred ------------------------------------H-----HHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHH
Confidence 1 13335788999999999999999998874 56666666
Q ss_pred HHcC
Q 005581 605 QKAN 608 (690)
Q Consensus 605 ~~a~ 608 (690)
+++.
T Consensus 196 ~~a~ 199 (257)
T COG1024 196 ELAR 199 (257)
T ss_pred HHHH
Confidence 6655
No 101
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.69 E-value=5.9e-16 Score=161.36 Aligned_cols=164 Identities=23% Similarity=0.224 Sum_probs=116.7
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-----hHHH-----
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-----DLMW----- 452 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-----~~i~----- 452 (690)
++.|++|+++.+-.. |..+..+.++|.+.++++..|++||+|||+.. |.|++.... ....
T Consensus 10 ~~~v~~itlnrp~~~------Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 83 (254)
T PRK08259 10 NGPVTTVILNRPEVR------NAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDG 83 (254)
T ss_pred ECCEEEEEecCCccc------cCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcc
Confidence 368999999998542 45667788999999999999999999999875 466664320 0111
Q ss_pred HH-HHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccchhh
Q 005581 453 RE-IRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKYAE 527 (690)
Q Consensus 453 ~~-I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~~~ 527 (690)
.. ...+.-+|||||.|+|.|.|||+.|+++||++||++++.+|. +|+.+.......+..++|
T Consensus 84 ~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG------------- 150 (254)
T PRK08259 84 PMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIG------------- 150 (254)
T ss_pred hhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhC-------------
Confidence 00 111234899999999999999999999999999999998773 343333222212222222
Q ss_pred hhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHc
Q 005581 528 VLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKA 607 (690)
Q Consensus 528 ~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a 607 (690)
.. ...+.+++|+.++++||+++||||++.+.++..+.+.+++
T Consensus 151 ---------------------------------~~-----~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 192 (254)
T PRK08259 151 ---------------------------------HS-----RAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELA 192 (254)
T ss_pred ---------------------------------HH-----HHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHH
Confidence 11 1345578899999999999999999998776555554443
No 102
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.68 E-value=1.1e-15 Score=153.14 Aligned_cols=161 Identities=22% Similarity=0.214 Sum_probs=125.7
Q ss_pred EEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECc
Q 005581 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (690)
Q Consensus 391 AvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g 470 (690)
.+|.+.|+|++ .+...+++.|..+...+..+.|.|+||||||++.+...|++.|+.. +.||++.+.|
T Consensus 24 r~I~i~g~I~~-----------~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~--~~~V~t~v~G 90 (197)
T PRK14512 24 RSIVIAGEINK-----------DLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFV--KPKVFTIGVG 90 (197)
T ss_pred cEEEECCEEcH-----------HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhC--CCCEEEEEEe
Confidence 47888999984 3578899999888875677999999999999999999999999977 7899999999
Q ss_pred cccHHHHHHHHhcCe--EEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581 471 VAASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA 548 (690)
Q Consensus 471 ~AaSGGy~iA~aaD~--I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i 548 (690)
.|+|.|..|+++||+ +++.|++.+...-..+.. .|...++ +.-.+.+
T Consensus 91 ~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~------------------~G~a~di-------------~~~a~~l 139 (197)
T PRK14512 91 LVASAAALIFLAAKKESRFSLPNARYLLHQPLSGF------------------KGVATDI-------------EIYANEL 139 (197)
T ss_pred eeHhHHHHHHhcCCcCceeECCCCcEEEEcCcccc------------------ccCHHHH-------------HHHHHHH
Confidence 999999999999986 899999986543211111 1111111 1122344
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581 549 QNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG 595 (690)
Q Consensus 549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~ 595 (690)
++..+.+.+..++.+|++.+.++.... ...+|++||+++||||+|..
T Consensus 140 ~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~ 187 (197)
T PRK14512 140 NKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVE 187 (197)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeec
Confidence 555555566668888999999998877 66779999999999999875
No 103
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.68 E-value=8.8e-16 Score=154.41 Aligned_cols=161 Identities=17% Similarity=0.235 Sum_probs=131.6
Q ss_pred EEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECc
Q 005581 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (690)
Q Consensus 391 AvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g 470 (690)
.+|.+.|+|++ .+.+.++..|..+..++..+.|.|+||||||++.+...|++.|+.. +.||++.+.|
T Consensus 32 rii~i~g~I~~-----------~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~--~~~v~t~~~G 98 (200)
T PRK00277 32 RIIFLGGEVED-----------HMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI--KPDVSTICIG 98 (200)
T ss_pred cEEEECCEECH-----------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhc--CCCEEEEEEe
Confidence 37889999984 4578899999999888888899999999999999999999999977 6789999999
Q ss_pred cccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581 471 VAASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA 548 (690)
Q Consensus 471 ~AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i 548 (690)
.|+|+|..|+++|+ .+++.|++.++..-..+.. .| +..+.+...+.+
T Consensus 99 ~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~------------------~G-------------~a~di~~~a~~l 147 (200)
T PRK00277 99 QAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF------------------QG-------------QATDIEIHAREI 147 (200)
T ss_pred EeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc------------------cC-------------ChhHHHHHHHHH
Confidence 99999999999876 6999999987643221110 11 122333455677
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581 549 QNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG 595 (690)
Q Consensus 549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~ 595 (690)
+.+.+.+.+..++.+|++.+.+++... +..++++||+++||||+|..
T Consensus 148 ~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~ 195 (200)
T PRK00277 148 LKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLT 195 (200)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEee
Confidence 777778888889999999999998766 78889999999999999864
No 104
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=99.67 E-value=7.7e-16 Score=151.22 Aligned_cols=157 Identities=16% Similarity=0.106 Sum_probs=131.8
Q ss_pred EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a 221 (690)
+|.+.|+|.+. +..+++..|..+..++..+.|+|.+|||||++.....|.+.|+.+ +.||++++. .|
T Consensus 11 ~i~i~g~I~~~---------~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~---~~~v~t~~~g~a 78 (171)
T cd07017 11 IIFLGGPIDDE---------VANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYI---KPPVSTICLGLA 78 (171)
T ss_pred EEEEcCEEcHH---------HHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhc---CCCEEEEEEeEe
Confidence 68899999864 356899999999999889999999999999999999999999865 589999997 79
Q ss_pred chhhhHHhhccC--eeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 222 as~gY~LAsaaD--~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
+|+|++|+++|| ++||.|.+.++++.+.. .. .-+..+.+.....++
T Consensus 79 aS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~------------------------------~~--~g~~~~~~~~~~~l~ 126 (171)
T cd07017 79 ASMGALLLAAGTKGKRYALPNSRIMIHQPLG------------------------------GA--GGQASDIEIQAKEIL 126 (171)
T ss_pred hhHHHHHHHcCCCCCEEEccchHHHHcCCCc------------------------------cC--CCCHHHHHHHHHHHH
Confidence 999999999999 89999999999886511 00 111233444455677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhc-CcccHHHHHhcCCeeEe
Q 005581 300 NIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEGFITNV 343 (690)
Q Consensus 300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~-~v~~a~eAl~~GLID~i 343 (690)
.+.+.+.+.+++.+|++.+++.++++. ..++++||+++||||+|
T Consensus 127 ~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 127 RLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 889999999999999999999999965 56699999999999985
No 105
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.67 E-value=2.5e-16 Score=164.60 Aligned_cols=167 Identities=20% Similarity=0.255 Sum_probs=118.1
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-------h------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------D------ 449 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------~------ 449 (690)
.+.|++|+++.+=.. |..+..+.++|.+.++++..|+++|+|||+.. |.|++.... .
T Consensus 13 ~~~v~~i~lnrp~~~------Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 86 (260)
T PRK07827 13 DGGVATLTLDSPHNR------NALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVAR 86 (260)
T ss_pred eCCEEEEEEcCcccc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHH
Confidence 368999999987542 45566788999999999999999999999875 456654210 0
Q ss_pred --HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581 450 --LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR 522 (690)
Q Consensus 450 --~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~ 522 (690)
.+.+.++.+ ..+|||||.++|.|.|||+.|+++||++||++.+.+|. +|+++.......+ .++
T Consensus 87 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l-~~l--------- 156 (260)
T PRK07827 87 AREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLL-PRL--------- 156 (260)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhH-Hhh---------
Confidence 111222323 34999999999999999999999999999999998873 4444333221111 011
Q ss_pred cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccC-h-HHHH
Q 005581 523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGG-F-SRAV 600 (690)
Q Consensus 523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~-~-~~ai 600 (690)
. .....+.+++|+.|+++||+++||||++.+ + +.+.
T Consensus 157 -------------------------------------~-----~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~l~~~a~ 194 (260)
T PRK07827 157 -------------------------------------S-----PRAAARYYLTGEKFGAAEAARIGLVTAAADDVDAAVA 194 (260)
T ss_pred -------------------------------------h-----HHHHHHHHHhCCccCHHHHHHcCCcccchHHHHHHHH
Confidence 1 112345578899999999999999999963 2 3455
Q ss_pred HHHHHHcCCCC
Q 005581 601 AIAKQKANIPE 611 (690)
Q Consensus 601 ~~a~~~a~l~~ 611 (690)
+.+.+++..++
T Consensus 195 ~~a~~la~~~~ 205 (260)
T PRK07827 195 ALLADLRRGSP 205 (260)
T ss_pred HHHHHHHhCCH
Confidence 66777777654
No 106
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.67 E-value=1.5e-15 Score=162.09 Aligned_cols=164 Identities=16% Similarity=0.105 Sum_probs=115.4
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhhh-------------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALASD------------- 449 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as~------------- 449 (690)
.+.|++|+++++-.. |..+..+.++|.++++++..|++||+|||+.+ |.|+++....
T Consensus 17 ~~~V~~Itlnrp~~~------Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~ 90 (302)
T PRK08272 17 TGRIARITLNRPEKG------NAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYP 90 (302)
T ss_pred ECCEEEEEecCcccc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccc
Confidence 368999999987642 45566789999999999999999999999875 4566542100
Q ss_pred ------------------------HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecccccc-ccc
Q 005581 450 ------------------------LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVV-TGK 503 (690)
Q Consensus 450 ------------------------~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~-~~~ 503 (690)
.+.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|...+- ++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~ 170 (302)
T PRK08272 91 GKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGV 170 (302)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccC
Confidence 001112222 349999999999999999999999999999999988742211 111
Q ss_pred cchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHH
Q 005581 504 FNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGND 583 (690)
Q Consensus 504 ~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~e 583 (690)
+.... +..+|...| ..+.+++|+.++|+|
T Consensus 171 ~~~~~----------------------------------------------~~~~vG~~~-----A~~llltG~~i~a~e 199 (302)
T PRK08272 171 PATGM----------------------------------------------WAYRLGPQR-----AKRLLFTGDCITGAQ 199 (302)
T ss_pred ChHHH----------------------------------------------HHHHhhHHH-----HHHHHHcCCccCHHH
Confidence 10000 011222222 345678899999999
Q ss_pred HHHcCCcccccChHHHHHHHHHHc
Q 005581 584 AASRGLVDALGGFSRAVAIAKQKA 607 (690)
Q Consensus 584 A~e~GLVD~ig~~~~ai~~a~~~a 607 (690)
|+++||||++.+.+++.+.+.++|
T Consensus 200 A~~~GLv~~vv~~~~l~~~a~~la 223 (302)
T PRK08272 200 AAEWGLAVEAVPPEELDERTERLV 223 (302)
T ss_pred HHHcCCCceecCHHHHHHHHHHHH
Confidence 999999999998776665554443
No 107
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.67 E-value=8.1e-16 Score=159.18 Aligned_cols=167 Identities=24% Similarity=0.243 Sum_probs=119.6
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------hH----
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------DL---- 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~~---- 450 (690)
++.|++|+++.+-.. |..+..+.++|.+.|+.+.+|++||+||++.. |.|++.... ..
T Consensus 5 ~~~v~~i~ln~p~~~------N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~ 78 (245)
T PF00378_consen 5 EDGVATITLNRPEKR------NALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRR 78 (245)
T ss_dssp ETTEEEEEEECGGGT------TEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCCC------CCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchh
Confidence 378999999999652 45566789999999999999999998888753 455554211 11
Q ss_pred HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581 451 MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY 525 (690)
Q Consensus 451 i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~ 525 (690)
+.+.+..+ ..+|||||.++|.|.|||+.++++||++||++.+.+|. +|+++.......+..++|.
T Consensus 79 ~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~---------- 148 (245)
T PF00378_consen 79 FQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGP---------- 148 (245)
T ss_dssp HHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHH----------
T ss_pred hccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeec----------
Confidence 11222222 34999999999999999999999999999999999884 4544444333333322221
Q ss_pred hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHH----H
Q 005581 526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV----A 601 (690)
Q Consensus 526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai----~ 601 (690)
.+ ..+.+++|+.++|+||+++||||++...+++. +
T Consensus 149 ------------------------------------~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~ 187 (245)
T PF00378_consen 149 ------------------------------------SR-----ARELLLTGEPISAEEALELGLVDEVVPDEELDEEALE 187 (245)
T ss_dssp ------------------------------------HH-----HHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHH
T ss_pred ------------------------------------cc-----ccccccccccchhHHHHhhcceeEEcCchhhhHHHHH
Confidence 11 33556889999999999999999998877544 4
Q ss_pred HHHHHcCCC
Q 005581 602 IAKQKANIP 610 (690)
Q Consensus 602 ~a~~~a~l~ 610 (690)
.++++++.+
T Consensus 188 ~a~~l~~~~ 196 (245)
T PF00378_consen 188 LAKRLAAKP 196 (245)
T ss_dssp HHHHHHTSC
T ss_pred HHHHHhcCC
Confidence 455555543
No 108
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.67 E-value=1.4e-15 Score=154.10 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=127.4
Q ss_pred EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~ 471 (690)
+|.+.|+|++ .+++.++.+|..+...+.-+-|.|+||||||++.+...|+++++.. +-||++.+.|.
T Consensus 56 iifl~~~Idd-----------~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~--~~~V~tv~~G~ 122 (221)
T PRK14514 56 IIFLGTQIDD-----------YTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFI--SSDVATICTGM 122 (221)
T ss_pred EEEECCEEcH-----------HHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhc--CCCEEEEEEEE
Confidence 6789999984 5678899988888766666899999999999999999999999988 77999999999
Q ss_pred ccHHHHHHHHhcCe--EEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581 472 AASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ 549 (690)
Q Consensus 472 AaSGGy~iA~aaD~--I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~ 549 (690)
|||.|..|+++||+ ++|.|++.+...-..++. .|. ..+.+.-.+.+.
T Consensus 123 AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~------------------~G~-------------a~di~i~a~el~ 171 (221)
T PRK14514 123 AASMASVLLVAGTKGKRSALPHSRVMIHQPLGGA------------------QGQ-------------ASDIEITAREIQ 171 (221)
T ss_pred ehhHHHHHHhcCCCCceeeCCCCEEEeccCCccc------------------CCC-------------cchHHHHHHHHH
Confidence 99999999999996 899999987643321110 111 112223344556
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581 550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG 595 (690)
Q Consensus 550 ~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~ 595 (690)
++.+...+..++..|.+.+++++..+ ..++|++||+++||||+|..
T Consensus 172 ~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 172 KLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLI 218 (221)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEee
Confidence 66666666668888999999998777 77779999999999999853
No 109
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.66 E-value=2.3e-15 Score=159.37 Aligned_cols=163 Identities=18% Similarity=0.168 Sum_probs=114.6
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHh-----CCCceEEEEEcc-----CCCcchhhh--------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRE-----SKRYKAAIIRID-----SPGGDALAS-------- 448 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~-----D~~VkaVVLrin-----SpGG~~~as-------- 448 (690)
++.|++|+++ +=. .|..+..+.++|.+.++++.+ |++||+|||+.+ |.|++....
T Consensus 24 ~~~ia~itl~-p~~------~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~ 96 (287)
T PRK08788 24 ERNVMWMYMR-AQP------RPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD 96 (287)
T ss_pred cCCEEEEEEC-CCC------CCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence 4789999985 422 245566788999999999998 899999999886 456654310
Q ss_pred -h-------HHHHHHHHh----cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHH
Q 005581 449 -D-------LMWREIRLL----SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEK 512 (690)
Q Consensus 449 -~-------~i~~~I~~l----~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~k 512 (690)
+ .+.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+.
T Consensus 97 ~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~-- 174 (287)
T PRK08788 97 RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLA-- 174 (287)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHH--
Confidence 0 011112211 35899999999999999999999999999999998873 44433332222222
Q ss_pred cCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCccc
Q 005581 513 IGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDA 592 (690)
Q Consensus 513 lGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ 592 (690)
..|...| ..+.+++|+.++|+||+++||||+
T Consensus 175 --------------------------------------------~~vG~~~-----A~ellltG~~l~A~eA~~~GLV~~ 205 (287)
T PRK08788 175 --------------------------------------------RRVGPKL-----AEELILSGKLYTAEELHDMGLVDV 205 (287)
T ss_pred --------------------------------------------HHhhHHH-----HHHHHHcCCCCCHHHHHHCCCCcE
Confidence 2222222 345578899999999999999999
Q ss_pred ccChHHHHHHHHHHc
Q 005581 593 LGGFSRAVAIAKQKA 607 (690)
Q Consensus 593 ig~~~~ai~~a~~~a 607 (690)
+.+.++..+.+.+++
T Consensus 206 vv~~~el~~~a~~~a 220 (287)
T PRK08788 206 LVEDGQGEAAVRTFI 220 (287)
T ss_pred ecCchHHHHHHHHHH
Confidence 988766555544443
No 110
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=99.66 E-value=2.2e-15 Score=150.45 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=125.8
Q ss_pred EEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECc
Q 005581 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (690)
Q Consensus 391 AvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g 470 (690)
-+|.+.|+|++ .+.+.++..|..+..++..+.|+|+||||||++.++..|++.|+.. +.||.+.+.|
T Consensus 27 riI~l~g~I~~-----------~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~--~~~v~t~~~G 93 (191)
T TIGR00493 27 RIIFLSGEVND-----------SVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFI--KPDVSTICIG 93 (191)
T ss_pred eEEEEccEECh-----------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhc--CCCEEEEEEE
Confidence 47899999984 3568899999999888888999999999999999999999999987 5678888889
Q ss_pred cccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHH
Q 005581 471 VAASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA 548 (690)
Q Consensus 471 ~AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i 548 (690)
.|+|.|..|++++| ++++.|++.++........ .|... +.+.-.+.+
T Consensus 94 ~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~------------------~G~a~-------------d~~~~a~~l 142 (191)
T TIGR00493 94 QAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGA------------------QGQAS-------------DIEIQANEI 142 (191)
T ss_pred eeccHHHHHHhcCCCCcEEecCCceEEEecCcccc------------------cCCcc-------------hhHHHHHHH
Confidence 99999999999887 4999999998754322111 11111 112223455
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCccccc
Q 005581 549 QNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALG 594 (690)
Q Consensus 549 ~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig 594 (690)
+.+.+.+.+..++..|++.+.+++.+. +..+|++||+++||||+|.
T Consensus 143 ~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii 189 (191)
T TIGR00493 143 LRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVL 189 (191)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEe
Confidence 556666666668888999999998777 7777999999999999984
No 111
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.65 E-value=3.3e-15 Score=148.68 Aligned_cols=163 Identities=23% Similarity=0.243 Sum_probs=119.7
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhh--------------hh
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA--------------SD 449 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~a--------------s~ 449 (690)
++|++|.++.+-.. +..+..+.++|.+.++.+..|+++|+|||+.+ |+|++... ..
T Consensus 7 ~~i~~i~l~~~~~~------N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~ 80 (195)
T cd06558 7 GGVATITLNRPEKR------NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIR 80 (195)
T ss_pred CCEEEEEECCcccc------CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHH
Confidence 57999999988632 34556788999999999999999999999986 45655421 11
Q ss_pred HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecccc
Q 005581 450 LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGK 524 (690)
Q Consensus 450 ~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~ 524 (690)
.+.+.+..+ ..+||||+.++|.|.|||+.++++||+++|++++.++. +|.++.......+.+++|
T Consensus 81 ~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g---------- 150 (195)
T cd06558 81 ELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVG---------- 150 (195)
T ss_pred HHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhC----------
Confidence 112222222 23999999999999999999999999999999988874 333332222222221111
Q ss_pred hhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581 525 YAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA 603 (690)
Q Consensus 525 ~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a 603 (690)
.. ..+.+..|+.++|+||+++||||++...++..+.+
T Consensus 151 ------------------------------------------~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a 188 (195)
T cd06558 151 ------------------------------------------PARARELLLTGRRISAEEALELGLVDEVVPDEELLAAA 188 (195)
T ss_pred ------------------------------------------HHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHHHHH
Confidence 11 23446779999999999999999999999999888
Q ss_pred HHHcC
Q 005581 604 KQKAN 608 (690)
Q Consensus 604 ~~~a~ 608 (690)
.+++.
T Consensus 189 ~~~a~ 193 (195)
T cd06558 189 LELAR 193 (195)
T ss_pred HHHHh
Confidence 88765
No 112
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=99.65 E-value=9e-16 Score=166.45 Aligned_cols=158 Identities=19% Similarity=0.114 Sum_probs=114.9
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccC-----CCcchhhh---------h---
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-----PGGDALAS---------D--- 449 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinS-----pGG~~~as---------~--- 449 (690)
.+.|++|+++.|-. .|..+..+.++|.+.++++..|++||+|||+... .|++.... .
T Consensus 10 ~~~v~~itLnrP~~------~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (342)
T PRK05617 10 EGGVGVITLNRPKA------LNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAAD 83 (342)
T ss_pred ECCEEEEEECCCcc------ccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHH
Confidence 36899999998754 2455667889999999999999999999998853 56654220 0
Q ss_pred HHH----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeee
Q 005581 450 LMW----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEII 520 (690)
Q Consensus 450 ~i~----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i 520 (690)
..+ +.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+.
T Consensus 84 ~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~---------- 153 (342)
T PRK05617 84 RFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLS---------- 153 (342)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEeh----------
Confidence 111 111222 33999999999999999999999999999999999884 45444332211110
Q ss_pred cccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHH
Q 005581 521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAV 600 (690)
Q Consensus 521 ~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai 600 (690)
|-......+.+++|+.++|+||+++||||++.+.++..
T Consensus 154 ------------------------------------------r~~g~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~ 191 (342)
T PRK05617 154 ------------------------------------------RAPGALGTYLALTGARISAADALYAGLADHFVPSADLP 191 (342)
T ss_pred ------------------------------------------hcccHHHHHHHHcCCCCCHHHHHHcCCcceecCHHHHH
Confidence 00112245667899999999999999999999877655
Q ss_pred HH
Q 005581 601 AI 602 (690)
Q Consensus 601 ~~ 602 (690)
..
T Consensus 192 ~~ 193 (342)
T PRK05617 192 AL 193 (342)
T ss_pred HH
Confidence 44
No 113
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=99.65 E-value=3.8e-15 Score=149.42 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=129.6
Q ss_pred EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~ 471 (690)
+|.+.|+|++ .+++.++.+|-.+..++..+.|.|+||||||++++.-.|++.++.. +.||.+.+.|.
T Consensus 32 iifl~~~i~~-----------~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~--~~~V~Tv~~G~ 98 (200)
T CHL00028 32 LLFLGQEVDD-----------EIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFV--KPDVHTICLGL 98 (200)
T ss_pred EEEECCeecH-----------HHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhc--CCCEEEEEEEe
Confidence 6889999985 4678999999998877777999999999999999999999999987 78999999999
Q ss_pred ccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581 472 AASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ 549 (690)
Q Consensus 472 AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~ 549 (690)
|+|.|..|++++| +++|.|++.+...-..+.. ..|. ..+.+.-.+.++
T Consensus 99 AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~-----------------~~G~-------------a~di~~~a~~l~ 148 (200)
T CHL00028 99 AASMASFILAGGEITKRLAFPHARVMIHQPASSF-----------------YEGQ-------------ASEFVLEAEELL 148 (200)
T ss_pred hHHHHHHHHhCCCCCCEEecCCCeEEEecCccCc-----------------CCCC-------------HHHHHHHHHHHH
Confidence 9999999999999 6999999987643321110 0121 122233445566
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581 550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG 595 (690)
Q Consensus 550 ~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~ 595 (690)
..-+.+.+..++..|.+.+++++..+ ...+|++||+++||||+|..
T Consensus 149 ~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~ 195 (200)
T CHL00028 149 KLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAV 195 (200)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEee
Confidence 66666677778888999999998777 67779999999999999864
No 114
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.64 E-value=4.4e-15 Score=157.56 Aligned_cols=166 Identities=17% Similarity=0.154 Sum_probs=114.5
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------------- 448 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------------- 448 (690)
.+.|++|+++.+-.. |..+..+.++|.+.++++.+|++||+|||+.. |.|+++...
T Consensus 11 ~~~Va~ItlnrP~~~------Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~ 84 (288)
T PRK08290 11 AGRIARITLNRPEAR------NAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHP 84 (288)
T ss_pred eCCEEEEEecCcccc------CCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccccc
Confidence 368999999987542 45566788999999999999999999999875 456654210
Q ss_pred ------------h--------HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchH
Q 005581 449 ------------D--------LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLG 507 (690)
Q Consensus 449 ------------~--------~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~ 507 (690)
. .+.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.+|.-.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~-------- 156 (288)
T PRK08290 85 TLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVV-------- 156 (288)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccc--------
Confidence 0 011111222 34999999999999999999999999999999998773111
Q ss_pred HHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHc
Q 005581 508 KLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASR 587 (690)
Q Consensus 508 ~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~ 587 (690)
++|+. ..+. ..+...|...+ ..+.+++|+.++|+||+++
T Consensus 157 ----~lGl~----~~~~----------------------------~~l~~~iG~~~-----A~~llltG~~i~A~eA~~~ 195 (288)
T PRK08290 157 ----RMGIP----GVEY----------------------------FAHPWELGPRK-----AKELLFTGDRLTADEAHRL 195 (288)
T ss_pred ----ccCcC----cchH----------------------------HHHHHHhhHHH-----HHHHHHcCCCCCHHHHHHC
Confidence 12220 0000 00011122111 4456788999999999999
Q ss_pred CCcccccChHHHHHHHHHHc
Q 005581 588 GLVDALGGFSRAVAIAKQKA 607 (690)
Q Consensus 588 GLVD~ig~~~~ai~~a~~~a 607 (690)
||||++...++..+.+.+++
T Consensus 196 GLV~~vv~~~~l~~~a~~~a 215 (288)
T PRK08290 196 GMVNRVVPRDELEAETLELA 215 (288)
T ss_pred CCccEeeCHHHHHHHHHHHH
Confidence 99999998776665555444
No 115
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.63 E-value=5.2e-15 Score=147.92 Aligned_cols=160 Identities=14% Similarity=0.170 Sum_probs=127.1
Q ss_pred EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~ 471 (690)
+|.+.|+|++ .+.+.++..|..+..++..+.|.|+||||||++++...|++.++.. +-||++.+.|.
T Consensus 27 iifl~~~i~~-----------~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~--~~~V~t~~~G~ 93 (196)
T PRK12551 27 IIFLGEPVTS-----------DSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHV--KPDVHTVCVGL 93 (196)
T ss_pred EEEECCeecH-----------HHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhc--CCCEEEEEEEE
Confidence 6788888884 5678999999999877777999999999999999999999999988 67899999999
Q ss_pred ccHHHHHHHHhcCe--EEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581 472 AASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ 549 (690)
Q Consensus 472 AaSGGy~iA~aaD~--I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~ 549 (690)
|+|.|..|++++|+ ++|.|++.+...-..+.. .|.. .+.+.-.+.++
T Consensus 94 AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~------------------~G~a-------------~di~~~a~~l~ 142 (196)
T PRK12551 94 AASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA------------------RGQA-------------SDIRIQADEIL 142 (196)
T ss_pred ehhHHHHHHhCCCCCceecCCCCEEEEecCCccc------------------CCCc-------------chHHHHHHHHH
Confidence 99999999999986 899999987643221110 1111 12223344556
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581 550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG 595 (690)
Q Consensus 550 ~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~ 595 (690)
...+.+.+..++..|.+.+++++..+ ...+|++||+++||||+|..
T Consensus 143 ~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~ 189 (196)
T PRK12551 143 FLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVID 189 (196)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEec
Confidence 66666666667788999999998777 66679999999999999865
No 116
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=99.62 E-value=2.9e-15 Score=148.33 Aligned_cols=160 Identities=22% Similarity=0.242 Sum_probs=127.5
Q ss_pred EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~ 471 (690)
+|.+.|+|+. .++..+++.|..+...+..+-|.|.+|||||++.+.-.|++.|+.. +.||++.+.|.
T Consensus 18 ~i~l~g~I~~-----------~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~--~~~v~t~~~G~ 84 (182)
T PF00574_consen 18 IIFLNGPIDE-----------ESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSS--KAPVTTVVLGL 84 (182)
T ss_dssp EEEEESSBSH-----------HHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHS--SSEEEEEEEEE
T ss_pred EEEECCccCH-----------HHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhc--CCCeEEEEeCc
Confidence 6889999984 5678889988888767777899999999999999999999999987 89999999999
Q ss_pred ccHHHHHHHHhcCe--EEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581 472 AASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ 549 (690)
Q Consensus 472 AaSGGy~iA~aaD~--I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~ 549 (690)
|+|+|..|+++|+. +++.|++.++......... | +..+.+...+.++
T Consensus 85 aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~------------------g-------------~~~~l~~~~~~l~ 133 (182)
T PF00574_consen 85 AASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSG------------------G-------------NASELREQAKELE 133 (182)
T ss_dssp EETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEE------------------E-------------EHHHHHHHHHHHH
T ss_pred cccceehhhhcCCcCceeeeecCEEEeecceeecc------------------c-------------ccchhHHHHHHHH
Confidence 99999999999999 7999999977543221111 1 1223334455666
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581 550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG 595 (690)
Q Consensus 550 ~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~ 595 (690)
+..+.+.+.+++..|++.+.++..+. ...++++||+++||||+|.+
T Consensus 134 ~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 134 KLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence 66777778888899999999999887 55569999999999999865
No 117
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.61 E-value=1e-14 Score=172.29 Aligned_cols=164 Identities=20% Similarity=0.157 Sum_probs=121.8
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-------h----HH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------D----LM 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------~----~i 451 (690)
++.|++|+++.+-. .|..+..+.++|.++++++..|++||+|||+.+ |.|++.... . .+
T Consensus 14 ~~~v~~itlnrp~~------~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 87 (715)
T PRK11730 14 EDGIAELVFDAPGS------VNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQW 87 (715)
T ss_pred CCCEEEEEEcCCCC------CCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHH
Confidence 37899999998654 245667788999999999999999999999875 466665220 0 11
Q ss_pred H----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581 452 W----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR 522 (690)
Q Consensus 452 ~----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~ 522 (690)
. +.+..+ ..+|||||+|+|.|.|||+.||++||++||++.+.+|. +|+++.......+...+|.
T Consensus 88 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~------- 160 (715)
T PRK11730 88 LHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGA------- 160 (715)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCH-------
Confidence 1 122223 34999999999999999999999999999999999883 5665554444333333332
Q ss_pred cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581 523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI 602 (690)
Q Consensus 523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~ 602 (690)
. .+.+.+++|+.++|+||+++||||++...++.++.
T Consensus 161 ---------------------------------------~-----~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~ 196 (715)
T PRK11730 161 ---------------------------------------D-----NALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEA 196 (715)
T ss_pred ---------------------------------------H-----HHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHH
Confidence 1 13456788999999999999999999987766666
Q ss_pred HHHHc
Q 005581 603 AKQKA 607 (690)
Q Consensus 603 a~~~a 607 (690)
+.+++
T Consensus 197 a~~~a 201 (715)
T PRK11730 197 ALALL 201 (715)
T ss_pred HHHHH
Confidence 55555
No 118
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.3e-14 Score=157.51 Aligned_cols=173 Identities=17% Similarity=0.233 Sum_probs=138.8
Q ss_pred ccccccCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcC
Q 005581 132 PWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSG 211 (690)
Q Consensus 132 p~~~~~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sg 211 (690)
++....++.|++++++|+|.. .+.+.+.+.|+.|.+ .+-.+|+|.+|+|||-+..+.+|.++|. ++.
T Consensus 19 ~~~~~~~~~v~vi~i~g~I~~---------~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~---~s~ 85 (436)
T COG1030 19 PSVATAEKKVYVIEIDGAIDP---------ASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAIL---NSP 85 (436)
T ss_pred ccccccCCeEEEEEecCccCH---------HHHHHHHHHHHHHHh-CCCcEEEEEecCCCchHHHHHHHHHHHH---cCC
Confidence 334446789999999999987 457889999999975 5788999999999999998888877777 889
Q ss_pred CeEEEEec----CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCC
Q 005581 212 KFIIGYVP----VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMS 287 (690)
Q Consensus 212 KpVvAy~~----~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S 287 (690)
.||+.|+. .|+|+|.||+.+||.++|.|++.+|+.-+.... + +...
T Consensus 86 vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~-------------------------g-----~~~~ 135 (436)
T COG1030 86 VPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGG-------------------------G-----TSAK 135 (436)
T ss_pred CCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCC-------------------------C-----CCcc
Confidence 99999985 489999999999999999999999988552111 0 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhc-CcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 288 EENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 288 ~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~-~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
+++ .-+-+..++...|+.||.+.+..+++++. ..++++||++.|+||-+.. ++.+.+++.
T Consensus 136 ~~~-------~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~--~~~ell~~~ 196 (436)
T COG1030 136 EAN-------TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIAR--DLNELLKKL 196 (436)
T ss_pred chh-------hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccC--CHHHHHHHc
Confidence 221 44566789999999999999999999875 6899999999999999965 444444443
No 119
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.60 E-value=1.1e-14 Score=159.90 Aligned_cols=166 Identities=16% Similarity=0.090 Sum_probs=119.8
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh-------hH----H
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS-------DL----M 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as-------~~----i 451 (690)
.+.|++|+++.+-.. |..+..+..+|.+.++.+..|++||+|||+.+ |.||++... +. +
T Consensus 18 ~~~v~~ItLnrP~~~------Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 91 (379)
T PLN02874 18 KGRVRVITLNRPRQL------NVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVV 91 (379)
T ss_pred ECCEEEEEECCCccc------cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHH
Confidence 367999999987652 45567789999999999999999999999875 466765321 11 1
Q ss_pred HH---HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581 452 WR---EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG 523 (690)
Q Consensus 452 ~~---~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g 523 (690)
.+ .+..+ .-+|||||.|+|.|+|||+.|+++||++||++++.+|. +|+++.......+.
T Consensus 92 ~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~------------- 158 (379)
T PLN02874 92 YRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILS------------- 158 (379)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHH-------------
Confidence 11 11222 33999999999999999999999999999999999873 55544332211111
Q ss_pred chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHH
Q 005581 524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIA 603 (690)
Q Consensus 524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a 603 (690)
..+. ....+.+++|+.++|+||+++||||++...+++.+.+
T Consensus 159 ---------------------------------rl~g------~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~ 199 (379)
T PLN02874 159 ---------------------------------RLPG------HLGEYLALTGARLNGKEMVACGLATHFVPSEKLPELE 199 (379)
T ss_pred ---------------------------------hhhH------HHHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHH
Confidence 0001 1133557889999999999999999999988877755
Q ss_pred HHHcCCC
Q 005581 604 KQKANIP 610 (690)
Q Consensus 604 ~~~a~l~ 610 (690)
.+++.++
T Consensus 200 ~~l~~l~ 206 (379)
T PLN02874 200 KRLLNLN 206 (379)
T ss_pred HHHHhcC
Confidence 5555444
No 120
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.60 E-value=1.9e-14 Score=144.21 Aligned_cols=161 Identities=17% Similarity=0.197 Sum_probs=124.8
Q ss_pred EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~ 471 (690)
+|.+.|+|++ .+++.++..|..+..++.-+-|.|+||||||++++.-.|++.++.. +-||.+.+.|.
T Consensus 29 iifl~~~i~~-----------~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~--~~~V~Ti~~G~ 95 (201)
T PRK14513 29 IIFVGTPIES-----------QMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYI--KAPVSTICVGI 95 (201)
T ss_pred EEEECCEEcH-----------HHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhc--CCCEEEEEEee
Confidence 5778888884 4578899999888887777899999999999999999999999988 67899999999
Q ss_pred ccHHHHHHHHhcCe--EEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581 472 AASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ 549 (690)
Q Consensus 472 AaSGGy~iA~aaD~--I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~ 549 (690)
|+|.|..|+++||+ ++|.|++.+...-..... .|... +.+...+.++
T Consensus 96 AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~------------------~G~a~-------------di~~~a~el~ 144 (201)
T PRK14513 96 AMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF------------------RGNTP-------------DLEVQAKEVL 144 (201)
T ss_pred ehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCC------------------CCCHH-------------HHHHHHHHHH
Confidence 99999999999996 899999986532211100 12112 2223333444
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccCh
Q 005581 550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGGF 596 (690)
Q Consensus 550 ~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~~ 596 (690)
..-+.+.+..++..|.+.+++++.+. ...+|++||+++||||+|...
T Consensus 145 ~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 145 FLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEecc
Confidence 45555555557777899999998877 666799999999999999653
No 121
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.60 E-value=1.4e-14 Score=155.73 Aligned_cols=154 Identities=18% Similarity=0.169 Sum_probs=111.6
Q ss_pred cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh--------h---HH-
Q 005581 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS--------D---LM- 451 (690)
Q Consensus 389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as--------~---~i- 451 (690)
.+++|+++.+-.. |+.+..+..+|.+.++++..|++|++|||+.. |.|++...- . .+
T Consensus 37 ~~A~ItLNRP~k~------NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~ 110 (360)
T TIGR03200 37 YNAWIILDNPKQY------NSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYM 110 (360)
T ss_pred EEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHH
Confidence 3566888887542 45566789999999999999999999999874 345543210 0 01
Q ss_pred ---HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581 452 ---WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG 523 (690)
Q Consensus 452 ---~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g 523 (690)
.+.++.+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|+++.......+...+|.
T Consensus 111 ~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~-------- 182 (360)
T TIGR03200 111 RLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGC-------- 182 (360)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCH--------
Confidence 1222223 23999999999999999999999999999999999883 5555444433333322332
Q ss_pred chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHH
Q 005581 524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRA 599 (690)
Q Consensus 524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a 599 (690)
.| ..+.+++|+.|+|+||+++||||++.+.++.
T Consensus 183 --------------------------------------~r-----A~~llltGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 183 --------------------------------------EQ-----AMVSGTLCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred --------------------------------------HH-----HHHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence 12 3455788999999999999999999876654
No 122
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.60 E-value=1.7e-14 Score=145.78 Aligned_cols=161 Identities=13% Similarity=0.103 Sum_probs=132.0
Q ss_pred EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a 221 (690)
+|.|.|+|.+. +..++++.|..+...+..+.|+|.||||||++.....|+++|+.++ .||++++. .|
T Consensus 37 ~I~l~g~I~~~---------~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~---~~v~t~~~G~a 104 (207)
T PRK12553 37 IIFLGGQVDDA---------SANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIR---PDVQTVCTGQA 104 (207)
T ss_pred EEEEcceECHH---------HHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcC---CCcEEEEEeeh
Confidence 47888999874 3578999999998877789999999999999999999999999764 58999997 79
Q ss_pred chhhhHHhhccC--eeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 222 as~gY~LAsaaD--~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
+|+|.+|+++|| ++||.|.+.++++.+.... +. .-+..+.+.....++
T Consensus 105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~---------------------------~~---~G~a~d~~~~~~~l~ 154 (207)
T PRK12553 105 ASAGAVLLAAGTPGKRFALPNARILIHQPSLGG---------------------------GI---RGQASDLEIQAREIL 154 (207)
T ss_pred hhHHHHHHHcCCcCcEEECCCchhhhcCccccC---------------------------CC---ccCHHHHHHHHHHHH
Confidence 999999999999 5899999999999662100 00 012223333445677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhc-CcccHHHHHhcCCeeEecc
Q 005581 300 NIYGNWLDKVSSTKGKRKEDIERFIND-GVYKVERLKEEGFITNVLY 345 (690)
Q Consensus 300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~-~v~~a~eAl~~GLID~i~~ 345 (690)
.+.+.|.+.+++.+|++.+.+++.++. ..++++||+++||||+|..
T Consensus 155 ~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~ 201 (207)
T PRK12553 155 RMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIIT 201 (207)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcC
Confidence 888999999999999999999998865 5779999999999999964
No 123
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.59 E-value=3.2e-14 Score=146.08 Aligned_cols=161 Identities=17% Similarity=0.179 Sum_probs=110.1
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhh-------hhHHH---
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALA-------SDLMW--- 452 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~a-------s~~i~--- 452 (690)
++.|++|+++.+ . .|..+..+.++|.+.+.++. +++|+|||+.+ |.|++... ...++
T Consensus 10 ~~~v~~itln~~-~------~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 80 (229)
T PRK06213 10 EDGVATITLDDG-K------VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAG 80 (229)
T ss_pred cCCEEEEEeCCC-C------CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHH
Confidence 368999999975 2 24556677899999999887 56799999875 35555421 11121
Q ss_pred -HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecC-ceecc----ccccccccchHHHHHHcCCceeeecccch
Q 005581 453 -REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENL-TLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRGKY 525 (690)
Q Consensus 453 -~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~-t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g~~ 525 (690)
+.++.+ .-+|||||+++|.|.|||+.|+++||++||++. +.+|. +|+.+.......+..++|
T Consensus 81 ~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g----------- 149 (229)
T PRK06213 81 STLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLT----------- 149 (229)
T ss_pred HHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcC-----------
Confidence 222223 349999999999999999999999999999998 77663 222211111111111111
Q ss_pred hhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHH
Q 005581 526 AEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAK 604 (690)
Q Consensus 526 ~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~ 604 (690)
.. ..+.+++|+.++|+||+++||||++.+.++..+.+.
T Consensus 150 -----------------------------------------~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 188 (229)
T PRK06213 150 -----------------------------------------PSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQ 188 (229)
T ss_pred -----------------------------------------HHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHH
Confidence 11 224468899999999999999999998777666666
Q ss_pred HHcC
Q 005581 605 QKAN 608 (690)
Q Consensus 605 ~~a~ 608 (690)
+++.
T Consensus 189 ~~a~ 192 (229)
T PRK06213 189 AAAR 192 (229)
T ss_pred HHHH
Confidence 5554
No 124
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.58 E-value=3e-14 Score=167.98 Aligned_cols=165 Identities=21% Similarity=0.201 Sum_probs=124.8
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh--------h---HH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS--------D---LM 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as--------~---~i 451 (690)
.+.|++|+++.+-. .|..+..+.++|.++++++..|++||+|||+.+ |.|+++... + .+
T Consensus 14 ~~gva~Itlnrp~~------~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 87 (714)
T TIGR02437 14 EDGIAELKFDAPGS------VNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQW 87 (714)
T ss_pred cCCEEEEEECCCCC------CCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHH
Confidence 36899999998643 245667788999999999999999999999875 456655211 0 11
Q ss_pred ----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeecc
Q 005581 452 ----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISR 522 (690)
Q Consensus 452 ----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~ 522 (690)
.+.+..+ ..+|||||.|+|.|.|||+.|+++||++||++.+.+|. +|++++......+...+|.
T Consensus 88 ~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~------- 160 (714)
T TIGR02437 88 LLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGA------- 160 (714)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCH-------
Confidence 1122222 34999999999999999999999999999999999883 6666665554444433333
Q ss_pred cchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581 523 GKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI 602 (690)
Q Consensus 523 g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~ 602 (690)
. ...+.+++|+.++++||+++||||++...++..+.
T Consensus 161 ---------------------------------------~-----~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~ 196 (714)
T TIGR02437 161 ---------------------------------------D-----NALEWIASGKENRAEDALKVGAVDAVVTADKLGAA 196 (714)
T ss_pred ---------------------------------------H-----HHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHH
Confidence 1 13456788999999999999999999988877777
Q ss_pred HHHHcC
Q 005581 603 AKQKAN 608 (690)
Q Consensus 603 a~~~a~ 608 (690)
|.+++.
T Consensus 197 a~~~a~ 202 (714)
T TIGR02437 197 ALQLLK 202 (714)
T ss_pred HHHHHH
Confidence 777663
No 125
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.58 E-value=7.3e-14 Score=140.08 Aligned_cols=164 Identities=12% Similarity=0.086 Sum_probs=128.5
Q ss_pred EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a 221 (690)
+|.|.|+|.+. ....|++.|..+...+..+.|+|.||||||.+.....|+++|+.+ ..||++++. .|
T Consensus 25 ~I~i~g~I~~~---------~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~---~~~V~t~v~G~A 92 (197)
T PRK14512 25 SIVIAGEINKD---------LSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFV---KPKVFTIGVGLV 92 (197)
T ss_pred EEEECCEEcHH---------HHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhC---CCCEEEEEEeee
Confidence 56778999874 246789999888764567899999999999999999999999965 468999998 79
Q ss_pred chhhhHHhhccCe--eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 222 as~gY~LAsaaD~--I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
+|+|.+|+++||+ .|+.|++.++++.+.... .+ +..+-+...+.++
T Consensus 93 aSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~-------------------------------~G-~a~di~~~a~~l~ 140 (197)
T PRK14512 93 ASAAALIFLAAKKESRFSLPNARYLLHQPLSGF-------------------------------KG-VATDIEIYANELN 140 (197)
T ss_pred HhHHHHHHhcCCcCceeECCCCcEEEEcCcccc-------------------------------cc-CHHHHHHHHHHHH
Confidence 9999999999996 789999999998552110 01 1111122223456
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEecc-hhHHH
Q 005581 300 NIYGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY-DDEVI 350 (690)
Q Consensus 300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i~~-~de~~ 350 (690)
.+.+.+.+.+++.+|++.+.+++.++.. .++++||+++||||+|.. .+++.
T Consensus 141 ~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 141 KVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence 7777888889999999999999998875 559999999999999964 34443
No 126
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.57 E-value=7.3e-14 Score=144.40 Aligned_cols=163 Identities=19% Similarity=0.219 Sum_probs=110.1
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCce-EEEEEcc----CCCcchhhh-------h---HH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYK-AAIIRID----SPGGDALAS-------D---LM 451 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~Vk-aVVLrin----SpGG~~~as-------~---~i 451 (690)
++.|++|+++.+-. |..+..+.++|.+.++++.+|++++ +||++.+ |.|++.... + ..
T Consensus 7 ~~~v~~i~Lnrp~~-------Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 79 (239)
T PLN02267 7 RGNLFILTLTGDGE-------HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLM 79 (239)
T ss_pred cCCEEEEEeCCCCc-------CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHH
Confidence 46899999998732 2345567899999999999999976 5666654 566664210 0 11
Q ss_pred ----HHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEec-Cceecc----cccc-ccccchHHHHHHcCCceeee
Q 005581 452 ----WREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAEN-LTLTGS----IGVV-TGKFNLGKLYEKIGFNKEII 520 (690)
Q Consensus 452 ----~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p-~t~~GS----IGv~-~~~~~~~~l~~klGi~~~~i 520 (690)
.+.+..+ .-+|||||.|+|.|.|||+.|+++||++||++ .+.++. +|+. +.. ....+..++|.
T Consensus 80 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~-~~~~l~~~vG~----- 153 (239)
T PLN02267 80 VAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDY-FMALLRAKIGS----- 153 (239)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChH-HHHHHHHHcCh-----
Confidence 1122223 34999999999999999999999999999985 567662 4442 211 11112112221
Q ss_pred cccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH-HHHHhcCCcccHHHHHHcCCcccccC-hHH
Q 005581 521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDK-MEEYAQGRVWTGNDAASRGLVDALGG-FSR 598 (690)
Q Consensus 521 ~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~-v~~l~~Grv~tg~eA~e~GLVD~ig~-~~~ 598 (690)
... .+.+++|+.++|+||+++||||++.+ .++
T Consensus 154 ----------------------------------------------~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~ 187 (239)
T PLN02267 154 ----------------------------------------------PAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEE 187 (239)
T ss_pred ----------------------------------------------HHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHH
Confidence 112 24578899999999999999999986 456
Q ss_pred HHHHHHHHcC
Q 005581 599 AVAIAKQKAN 608 (690)
Q Consensus 599 ai~~a~~~a~ 608 (690)
+++.+.++|.
T Consensus 188 l~~~a~~~A~ 197 (239)
T PLN02267 188 TVEAAVRLGE 197 (239)
T ss_pred HHHHHHHHHH
Confidence 6666655553
No 127
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.57 E-value=3.4e-14 Score=167.36 Aligned_cols=166 Identities=20% Similarity=0.234 Sum_probs=122.2
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEE-c----cCCCcchhhh---------hHHH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIR-I----DSPGGDALAS---------DLMW 452 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLr-i----nSpGG~~~as---------~~i~ 452 (690)
.+.|++|+++.+-.. .|..+..+.++|.+.|+++.+|++||+|||. . .|.|++.... ..+.
T Consensus 8 ~~~Va~itlnrp~~~-----~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 82 (699)
T TIGR02440 8 EDGIAILTIDVPGEK-----MNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALA 82 (699)
T ss_pred CCCEEEEEECCCCCC-----CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHH
Confidence 468999999987211 2456667889999999999999999999973 3 2566665321 0111
Q ss_pred ----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecC--ceec----cccccccccchHHHHHHcCCceeeec
Q 005581 453 ----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTG----SIGVVTGKFNLGKLYEKIGFNKEIIS 521 (690)
Q Consensus 453 ----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~--t~~G----SIGv~~~~~~~~~l~~klGi~~~~i~ 521 (690)
+.+..+ ..+|||||.|+|.|.|||+.|+++||++||+++ +.+| .+|+++.......+...+|.
T Consensus 83 ~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~------ 156 (699)
T TIGR02440 83 QQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGV------ 156 (699)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCH------
Confidence 122223 339999999999999999999999999999986 5777 35655555444333333332
Q ss_pred ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH
Q 005581 522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA 601 (690)
Q Consensus 522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~ 601 (690)
. ...+.+++|+.++++||+++||||++...+++++
T Consensus 157 ----------------------------------------~-----~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l~~ 191 (699)
T TIGR02440 157 ----------------------------------------S-----TALDMILTGKQLRAKQALKLGLVDDVVPQSILLD 191 (699)
T ss_pred ----------------------------------------H-----HHHHHHHcCCcCCHHHHHhCCCCcEecChhHHHH
Confidence 1 1345678899999999999999999999988888
Q ss_pred HHHHHcC
Q 005581 602 IAKQKAN 608 (690)
Q Consensus 602 ~a~~~a~ 608 (690)
.|.++|.
T Consensus 192 ~a~~~A~ 198 (699)
T TIGR02440 192 TAVEMAL 198 (699)
T ss_pred HHHHHHH
Confidence 8888885
No 128
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.57 E-value=4.3e-14 Score=155.66 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=115.1
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------h---H
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------D---L 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~---~ 450 (690)
.+.|++|++|.|-.. |..+..+..+|.++|+.+.+|++||+|||+.. |.||++..- + .
T Consensus 44 ~g~v~~ItLNRP~~l------NALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~ 117 (401)
T PLN02157 44 SGCSRTAILNRPPAL------NALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIRE 117 (401)
T ss_pred ECCEEEEEECCCCcc------CCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence 368999999998653 55667789999999999999999999999875 577876321 0 1
Q ss_pred HH----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeec
Q 005581 451 MW----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS 521 (690)
Q Consensus 451 i~----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~ 521 (690)
.+ +.+..+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++. ||+++.......|....|
T Consensus 118 ~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G------- 190 (401)
T PLN02157 118 FFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPG------- 190 (401)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhh-------
Confidence 11 111222 23999999999999999999999999999999999884 665554433222211111
Q ss_pred ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHH
Q 005581 522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRA 599 (690)
Q Consensus 522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a 599 (690)
....+.+++|+.++|+||+++||||++...++.
T Consensus 191 ---------------------------------------------~~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l 223 (401)
T PLN02157 191 ---------------------------------------------RLGEYLGLTGLKLSGAEMLACGLATHYIRSEEI 223 (401)
T ss_pred ---------------------------------------------HHHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH
Confidence 113355688999999999999999999876653
No 129
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=99.56 E-value=3.5e-14 Score=155.66 Aligned_cols=165 Identities=15% Similarity=0.108 Sum_probs=121.1
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhhh------------H
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALASD------------L 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as~------------~ 450 (690)
.+.|++|+++.+-. .|..+..+.++|.++|+++.+|++|++|||+.+ |.||++..-. .
T Consensus 16 ~~~i~~ItLnRP~~------lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~ 89 (381)
T PLN02988 16 KSSVRILTLNRPKQ------LNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGAN 89 (381)
T ss_pred ECCEEEEEECCCCc------cCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHH
Confidence 36899999998865 255667789999999999999999999999875 4677663210 1
Q ss_pred HH----HHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeec
Q 005581 451 MW----REIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS 521 (690)
Q Consensus 451 i~----~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~ 521 (690)
++ .....+ .-+|||||.|+|.|.|||+.|+++||++||++.+.++. ||+++.......+....|
T Consensus 90 ~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G------- 162 (381)
T PLN02988 90 FFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPG------- 162 (381)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHH-------
Confidence 11 111112 23999999999999999999999999999999999873 565544433222211111
Q ss_pred ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH
Q 005581 522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA 601 (690)
Q Consensus 522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~ 601 (690)
......+++|+.++|++|+++||||++...++..+
T Consensus 163 ---------------------------------------------~~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~ 197 (381)
T PLN02988 163 ---------------------------------------------FFGEYVGLTGARLDGAEMLACGLATHFVPSTRLTA 197 (381)
T ss_pred ---------------------------------------------HHHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHH
Confidence 01234568899999999999999999998877777
Q ss_pred HHHHHcCC
Q 005581 602 IAKQKANI 609 (690)
Q Consensus 602 ~a~~~a~l 609 (690)
.+.+++.+
T Consensus 198 ~~~~la~~ 205 (381)
T PLN02988 198 LEADLCRI 205 (381)
T ss_pred HHHHHHHh
Confidence 66666654
No 130
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.54 E-value=9.6e-14 Score=163.92 Aligned_cols=167 Identities=22% Similarity=0.276 Sum_probs=122.8
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhh---------hHHH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALAS---------DLMW 452 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as---------~~i~ 452 (690)
.+.|++|+++.+-.. .|..+..+.++|.+.++++..|++||+|||+.. |.|+++..- ..+.
T Consensus 13 ~~~va~itlnrp~~~-----~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~ 87 (708)
T PRK11154 13 EDNIAVITIDVPGEK-----MNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALA 87 (708)
T ss_pred CCCEEEEEECCCCCC-----CcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHH
Confidence 478999999987211 245567788999999999999999999999752 466655210 1111
Q ss_pred H----HHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCc--eecc----ccccccccchHHHHHHcCCceeeec
Q 005581 453 R----EIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLT--LTGS----IGVVTGKFNLGKLYEKIGFNKEIIS 521 (690)
Q Consensus 453 ~----~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t--~~GS----IGv~~~~~~~~~l~~klGi~~~~i~ 521 (690)
+ .+..+ .-+|||||.|+|.|.|||+.|+++||++||++++ .+|. +|+++.......+...+|.
T Consensus 88 ~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~------ 161 (708)
T PRK11154 88 RQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGV------ 161 (708)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCH------
Confidence 1 22233 3499999999999999999999999999999974 7773 5665554444334333332
Q ss_pred ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHH
Q 005581 522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVA 601 (690)
Q Consensus 522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~ 601 (690)
. ...+.+++|+.++++||+++||||++...+++++
T Consensus 162 ----------------------------------------~-----~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~ 196 (708)
T PRK11154 162 ----------------------------------------S-----TALDMILTGKQLRAKQALKLGLVDDVVPHSILLE 196 (708)
T ss_pred ----------------------------------------H-----HHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHH
Confidence 1 1345678899999999999999999999888888
Q ss_pred HHHHHcCC
Q 005581 602 IAKQKANI 609 (690)
Q Consensus 602 ~a~~~a~l 609 (690)
.|.++|.-
T Consensus 197 ~a~~~A~~ 204 (708)
T PRK11154 197 VAVELAKK 204 (708)
T ss_pred HHHHHHHh
Confidence 88888753
No 131
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.54 E-value=1.3e-13 Score=157.49 Aligned_cols=175 Identities=18% Similarity=0.158 Sum_probs=116.9
Q ss_pred CCcEEEEEeeccc----ccCCCCCCCCCcchHHHHHHHHHHHHH-hCCCceEEEEEcc-----CCCcchhhhh-------
Q 005581 387 GDQIAVIRASGSI----SRVRSPLSLSSSGIIGEQLIEKIRKVR-ESKRYKAAIIRID-----SPGGDALASD------- 449 (690)
Q Consensus 387 ~~~IAvI~i~G~I----~~~~~~~~~~~~~~~~~~l~~~l~~a~-~D~~VkaVVLrin-----SpGG~~~as~------- 449 (690)
.+.|++|+++.+- .+......|..+..+.++|.++++++. +|++||+|||+.+ |.|+++....
T Consensus 22 ~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~ 101 (550)
T PRK08184 22 DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWK 101 (550)
T ss_pred eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchh
Confidence 3689999999642 221001235566778899999999998 7999999999864 4666543210
Q ss_pred -HH---HH----HH-HHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecC--ceecc-----ccccccccchHHHHHH
Q 005581 450 -LM---WR----EI-RLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTGS-----IGVVTGKFNLGKLYEK 512 (690)
Q Consensus 450 -~i---~~----~I-~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~--t~~GS-----IGv~~~~~~~~~l~~k 512 (690)
.. .+ .+ +.+ .-+|||||.|+|.|.|||+.|+++||++|+++. +.+|. +|+++.......+
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg~~rl--- 178 (550)
T PRK08184 102 VNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRV--- 178 (550)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcchHHHh---
Confidence 00 01 11 111 239999999999999999999999999999986 66663 3444333222111
Q ss_pred cCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH-HHHhcCCcccHHHHHHcCCcc
Q 005581 513 IGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKM-EEYAQGRVWTGNDAASRGLVD 591 (690)
Q Consensus 513 lGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v-~~l~~Grv~tg~eA~e~GLVD 591 (690)
...|.+..... +.+++|+.++|+||+++||||
T Consensus 179 -----------------------------------------------~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd 211 (550)
T PRK08184 179 -----------------------------------------------TDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVD 211 (550)
T ss_pred -----------------------------------------------hhhhhcCHHHHHHHHHhCCcccHHHHHHcCCcc
Confidence 11123333333 345789999999999999999
Q ss_pred cccChHHHHH----HHHHHcCCCC
Q 005581 592 ALGGFSRAVA----IAKQKANIPE 611 (690)
Q Consensus 592 ~ig~~~~ai~----~a~~~a~l~~ 611 (690)
++...+++.+ .|.+++..++
T Consensus 212 ~vv~~d~l~~~a~~~A~~ia~~~~ 235 (550)
T PRK08184 212 EVVKPSKFDAKVAERAAELAAASD 235 (550)
T ss_pred EeeCHHHHHHHHHHHHHHHHhCCC
Confidence 9998665544 4566665543
No 132
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=99.54 E-value=1.8e-13 Score=136.71 Aligned_cols=160 Identities=17% Similarity=0.148 Sum_probs=126.5
Q ss_pred EEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-C
Q 005581 142 LTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-V 220 (690)
Q Consensus 142 lvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~ 220 (690)
-+|-+.|+|.+.. ..+++..|..+..++..+.|+|.||||||.+.....|++.|+..+ .||.+++. .
T Consensus 27 riI~l~g~I~~~~---------~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~---~~v~t~~~G~ 94 (191)
T TIGR00493 27 RIIFLSGEVNDSV---------ANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIK---PDVSTICIGQ 94 (191)
T ss_pred eEEEEccEEChHH---------HHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcC---CCEEEEEEEe
Confidence 3577899998643 467889998888877788899999999999999999999999764 46777776 7
Q ss_pred cchhhhHHhhccC--eeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHH
Q 005581 221 CGEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALL 298 (690)
Q Consensus 221 aas~gY~LAsaaD--~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~l 298 (690)
|+|.|.+|+++++ +++|.|++.++++.+... . .+-.. +.+...+.+
T Consensus 95 AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~------------------------------~-~G~a~-d~~~~a~~l 142 (191)
T TIGR00493 95 AASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGG------------------------------A-QGQAS-DIEIQANEI 142 (191)
T ss_pred eccHHHHHHhcCCCCcEEecCCceEEEecCccc------------------------------c-cCCcc-hhHHHHHHH
Confidence 8999999999876 589999999999966210 0 01111 122234567
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEecc
Q 005581 299 DNIYGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY 345 (690)
Q Consensus 299 d~~~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i~~ 345 (690)
+.+.+.+.+.+++..|++.+.+++.++.. .++++||+++||||+|..
T Consensus 143 ~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 143 LRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 77888888889999999999999998875 559999999999999864
No 133
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.54 E-value=1.4e-13 Score=156.75 Aligned_cols=172 Identities=17% Similarity=0.165 Sum_probs=116.0
Q ss_pred CcEEEEEeecccccCCCC----CCCCCcchHHHHHHHHHHHHH-hCCCceEEEEEcc-----CCCcchhhh--------h
Q 005581 388 DQIAVIRASGSISRVRSP----LSLSSSGIIGEQLIEKIRKVR-ESKRYKAAIIRID-----SPGGDALAS--------D 449 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~----~~~~~~~~~~~~l~~~l~~a~-~D~~VkaVVLrin-----SpGG~~~as--------~ 449 (690)
+.|++|+++.+-..|..+ ..|..+..+.++|.++|+++. +|++||+|||+.. |.|+++... .
T Consensus 19 g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~ 98 (546)
T TIGR03222 19 GPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKV 98 (546)
T ss_pred CCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhh
Confidence 679999999753111111 235566678899999999998 7999999999853 566664321 0
Q ss_pred -----------HHHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecC--ceecc-----ccccccccchHHHHH
Q 005581 450 -----------LMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTGS-----IGVVTGKFNLGKLYE 511 (690)
Q Consensus 450 -----------~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~--t~~GS-----IGv~~~~~~~~~l~~ 511 (690)
.+.+.++ .-+|||||.|+|.|.|||+.|+++||++||++. +.++. +|+++.......+.
T Consensus 99 ~~~~~~~~~~~~i~~~i~--~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg~~~l~- 175 (546)
T TIGR03222 99 NFCKFTNETRNGIEDSSR--HSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGGLTRVT- 175 (546)
T ss_pred hHHHHHHHHHHHHHHHHH--hCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccchhhhcc-
Confidence 0111222 239999999999999999999999999999986 56663 33333332211110
Q ss_pred HcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCc
Q 005581 512 KIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLV 590 (690)
Q Consensus 512 klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLV 590 (690)
..|.+... +.+.+++|+.++|+||+++|||
T Consensus 176 -------------------------------------------------~~~~vg~~~A~~llltG~~i~A~eA~~~GLV 206 (546)
T TIGR03222 176 -------------------------------------------------DKRRVRRDHADIFCTIEEGVRGKRAKEWRLV 206 (546)
T ss_pred -------------------------------------------------ccchhCHHHHHHHHHcCCCccHHHHHHcCCc
Confidence 01222232 3345688999999999999999
Q ss_pred ccccChHHH----HHHHHHHcCCCC
Q 005581 591 DALGGFSRA----VAIAKQKANIPE 611 (690)
Q Consensus 591 D~ig~~~~a----i~~a~~~a~l~~ 611 (690)
|++...++. .+.|.+++..++
T Consensus 207 ~~vv~~~~l~~~a~~lA~~la~~~p 231 (546)
T TIGR03222 207 DEVVKPSQFDAAIAERAAELAAQSD 231 (546)
T ss_pred eEEeChHHHHHHHHHHHHHHHhCCC
Confidence 999886544 445566666554
No 134
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=99.54 E-value=1.9e-13 Score=138.40 Aligned_cols=170 Identities=14% Similarity=0.095 Sum_probs=128.5
Q ss_pred EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcc---------hhhhhHHHHHHHHhcCCC
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD---------ALASDLMWREIRLLSESK 462 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~---------~~as~~i~~~I~~l~~~K 462 (690)
+|.+.|+|++.... ...++.-.++.++.+|-.+..++..|-|.|+||||||+ +.++-.|++.++.+ +-
T Consensus 32 ii~l~~~i~~~~~~-~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~i--k~ 108 (222)
T PRK12552 32 IVYLGLPLFSDDDA-KRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYI--KP 108 (222)
T ss_pred EEEECCeecccccc-ccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHhc--CC
Confidence 68899999864211 22333346888999999998887789999999999988 45667899999988 66
Q ss_pred CEEEEECccccHHHHHHHHhcCe--EEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhH
Q 005581 463 PVIASMSDVAASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDE 540 (690)
Q Consensus 463 PVVa~v~g~AaSGGy~iA~aaD~--I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~ 540 (690)
||.+.+-|.|+|.|..|+++||+ ++|.|++.+-..-..+.. .|. ..+
T Consensus 109 ~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~------------------~G~-------------A~d 157 (222)
T PRK12552 109 PVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA------------------RGQ-------------ATD 157 (222)
T ss_pred CeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc------------------ccC-------------HHH
Confidence 89999999999999999999997 889999986432211000 122 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581 541 AELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG 595 (690)
Q Consensus 541 ~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~ 595 (690)
.+.-.+.+.+..+.+.+..++..|.+.+++++..+ ..++|++||+++||||+|..
T Consensus 158 i~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~ 213 (222)
T PRK12552 158 IQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLE 213 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEec
Confidence 33444456666666666667788999999999887 66779999999999999964
No 135
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.53 E-value=2.3e-13 Score=136.89 Aligned_cols=159 Identities=16% Similarity=0.110 Sum_probs=130.1
Q ss_pred EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a 221 (690)
+|.|.|+|.+. +...++..|..+..++..+.|+|.||||||.+.....|++.|+.+ ..||++++. .|
T Consensus 33 ii~i~g~I~~~---------~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~I~d~i~~~---~~~v~t~~~G~a 100 (200)
T PRK00277 33 IIFLGGEVEDH---------MANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI---KPDVSTICIGQA 100 (200)
T ss_pred EEEECCEECHH---------HHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHHHHHHHHhc---CCCEEEEEEeEe
Confidence 56678999763 356799999988877778889999999999999999999999865 368998887 78
Q ss_pred chhhhHHhhccC--eeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 222 as~gY~LAsaaD--~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
+|+|.+|+++++ ++++.|.+.++++..... . .-+..+.+.....++
T Consensus 101 aS~a~~I~~ag~~~~r~~~p~s~imih~p~~~------------------------------~--~G~a~di~~~a~~l~ 148 (200)
T PRK00277 101 ASMGAFLLAAGAKGKRFALPNSRIMIHQPLGG------------------------------F--QGQATDIEIHAREIL 148 (200)
T ss_pred ccHHHHHHhcCCCCCEEEcCCceEEeccCccc------------------------------c--cCChhHHHHHHHHHH
Confidence 899999999875 699999999999855210 0 112334445567888
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEecc
Q 005581 300 NIYGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY 345 (690)
Q Consensus 300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i~~ 345 (690)
.+.+.+.+.+++.+|++.+.+++.++.. .++++||+++||||+|..
T Consensus 149 ~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~ 195 (200)
T PRK00277 149 KLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLT 195 (200)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEee
Confidence 8889999999999999999999988764 569999999999999964
No 136
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.52 E-value=1.5e-13 Score=162.53 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=111.3
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEE-EEcc----CCCcchhhh------h------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAI-IRID----SPGGDALAS------D------ 449 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVV-Lrin----SpGG~~~as------~------ 449 (690)
++.|++|+++.+-.. .|..+..+.++|.++++++..|++||+|| ++.+ |.|++...- +
T Consensus 20 ~~gVa~itlnrP~~~-----~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 94 (737)
T TIGR02441 20 KGDVAVVKIDSPNSK-----VNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLS 94 (737)
T ss_pred ECCEEEEEEcCCCCC-----CCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHH
Confidence 468999999987421 24556678899999999999999999865 5553 456654210 1
Q ss_pred -HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecC--ceecc----ccccccccchHHHHHHcCCceeeec
Q 005581 450 -LMWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENL--TLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS 521 (690)
Q Consensus 450 -~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~--t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~ 521 (690)
...+.+..+ ..+|||||+|+|.|.|||+.||++||+++|++. +.+|. +|++++......+...+|.
T Consensus 95 ~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~------ 168 (737)
T TIGR02441 95 QEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGV------ 168 (737)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCH------
Confidence 111122223 349999999999999999999999999999997 46773 6666555444444333332
Q ss_pred ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccCh
Q 005581 522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGF 596 (690)
Q Consensus 522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~ 596 (690)
. ...+.+++|+.++|+||+++||||++...
T Consensus 169 ----------------------------------------~-----~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 169 ----------------------------------------P-----AALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred ----------------------------------------H-----HHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 1 14456788999999999999999999875
No 137
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=99.51 E-value=4.4e-13 Score=134.55 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=130.0
Q ss_pred EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a 221 (690)
+|-|.|+|.+.. ..+++..|.....++.-+-|.|.||||||++.....|+++|+..+ -||++++. .|
T Consensus 32 iifl~~~i~~~~---------a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~---~~V~Tv~~G~A 99 (200)
T CHL00028 32 LLFLGQEVDDEI---------ANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIYDTMQFVK---PDVHTICLGLA 99 (200)
T ss_pred EEEECCeecHHH---------HHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcC---CCEEEEEEEeh
Confidence 466888888753 467899998877666669999999999999999999999999664 68999987 79
Q ss_pred chhhhHHhhccC--eeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 222 GEKEYYLACACE--ELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 222 as~gY~LAsaaD--~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
+|.|.+|++++| +++|.|.+.++++..... +. .+ +..+-+...+.++
T Consensus 100 aS~aslIl~aG~kg~R~~~p~s~imiHqp~~~-----------------------------~~-~G-~a~di~~~a~~l~ 148 (200)
T CHL00028 100 ASMASFILAGGEITKRLAFPHARVMIHQPASS-----------------------------FY-EG-QASEFVLEAEELL 148 (200)
T ss_pred HHHHHHHHhCCCCCCEEecCCCeEEEecCccC-----------------------------cC-CC-CHHHHHHHHHHHH
Confidence 999999999999 689999999999965211 00 11 2223344456677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEecc
Q 005581 300 NIYGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY 345 (690)
Q Consensus 300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i~~ 345 (690)
.+-+.+.+.+++..|.+.+++++.++.. .++++||+++||||+|..
T Consensus 149 ~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~ 195 (200)
T CHL00028 149 KLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAV 195 (200)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEee
Confidence 7888899999999999999999999875 559999999999999975
No 138
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=99.50 E-value=1.1e-13 Score=137.06 Aligned_cols=159 Identities=14% Similarity=0.176 Sum_probs=126.5
Q ss_pred EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a 221 (690)
.|.|.|+|.+. +...+++.|..+...+..+-|.|.+|||||.+.....|+++|+.. +.||++++. .|
T Consensus 18 ~i~l~g~I~~~---------~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~---~~~v~t~~~G~a 85 (182)
T PF00574_consen 18 IIFLNGPIDEE---------SANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSS---KAPVTTVVLGLA 85 (182)
T ss_dssp EEEEESSBSHH---------HHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHS---SSEEEEEEEEEE
T ss_pred EEEECCccCHH---------HHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhc---CCCeEEEEeCcc
Confidence 45677888764 356788888777555566889999999999999999999999954 689999998 79
Q ss_pred chhhhHHhhccCe--eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 222 as~gY~LAsaaD~--I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
+|+|.+|+++|++ .+|.|.+.++++.+..... .+..+-+.....++
T Consensus 86 aSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~--------------------------------g~~~~l~~~~~~l~ 133 (182)
T PF00574_consen 86 ASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSG--------------------------------GNASELREQAKELE 133 (182)
T ss_dssp ETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEE--------------------------------EEHHHHHHHHHHHH
T ss_pred ccceehhhhcCCcCceeeeecCEEEeecceeecc--------------------------------cccchhHHHHHHHH
Confidence 9999999999999 5999999999997622111 13334455566777
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhcCcc-cHHHHHhcCCeeEecc
Q 005581 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (690)
Q Consensus 300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~-~a~eAl~~GLID~i~~ 345 (690)
...+.+.+.+++..|++.+.+++.++...| +++||+++||||+|..
T Consensus 134 ~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 134 KLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence 888889999999999999999999887655 9999999999999964
No 139
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.50 E-value=4.1e-13 Score=136.26 Aligned_cols=159 Identities=13% Similarity=0.030 Sum_probs=125.8
Q ss_pred EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a 221 (690)
+|-|.|+|++. +..+++..|......+.-+-|.|.||||||++.....|+++++.++ -||++++. .|
T Consensus 56 iifl~~~Idd~---------~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~---~~V~tv~~G~A 123 (221)
T PRK14514 56 IIFLGTQIDDY---------TANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFIS---SDVATICTGMA 123 (221)
T ss_pred EEEECCEEcHH---------HHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcC---CCEEEEEEEEe
Confidence 46678888874 3467888877765544458899999999999999999999999764 58999987 79
Q ss_pred chhhhHHhhccCe--eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 222 as~gY~LAsaaD~--I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
+|.|.+|+++||+ .+|.|.+.++++.+... . .+ +..+-+...+.++
T Consensus 124 AS~AslIl~aG~~gkR~~~pna~iMiHqP~~~------------------------------~-~G-~a~di~i~a~el~ 171 (221)
T PRK14514 124 ASMASVLLVAGTKGKRSALPHSRVMIHQPLGG------------------------------A-QG-QASDIEITAREIQ 171 (221)
T ss_pred hhHHHHHHhcCCCCceeeCCCCEEEeccCCcc------------------------------c-CC-CcchHHHHHHHHH
Confidence 9999999999996 89999999999966210 0 01 1112233344567
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEecc
Q 005581 300 NIYGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY 345 (690)
Q Consensus 300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i~~ 345 (690)
.+.+.+.+.+++..|.+.+++.+.++.. .++++||+++||||+|..
T Consensus 172 ~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 172 KLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLI 218 (221)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEee
Confidence 7888888899999999999999999875 459999999999999864
No 140
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.50 E-value=5.2e-13 Score=133.60 Aligned_cols=160 Identities=13% Similarity=0.070 Sum_probs=127.8
Q ss_pred EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Cc
Q 005581 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VC 221 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~a 221 (690)
+|-|.|+|++. +..+++..|.....++..+-|.|.||||||++.....|+++|+.++ -||++++. .|
T Consensus 27 iifl~~~i~~~---------~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~---~~V~t~~~G~A 94 (196)
T PRK12551 27 IIFLGEPVTSD---------SANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVK---PDVHTVCVGLA 94 (196)
T ss_pred EEEECCeecHH---------HHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcC---CCEEEEEEEEe
Confidence 35677788774 3468999999887666668999999999999999999999999774 57888887 79
Q ss_pred chhhhHHhhccCe--eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 222 GEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 222 as~gY~LAsaaD~--I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
+|.|.+|++++|+ .+|.|.+.++++.+... ... +..+.+.....++
T Consensus 95 aS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~------------------------------~~G--~a~di~~~a~~l~ 142 (196)
T PRK12551 95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGG------------------------------ARG--QASDIRIQADEIL 142 (196)
T ss_pred hhHHHHHHhCCCCCceecCCCCEEEEecCCcc------------------------------cCC--CcchHHHHHHHHH
Confidence 9999999999996 78999999999965210 011 1112233345677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhcCc-ccHHHHHhcCCeeEecch
Q 005581 300 NIYGNWLDKVSSTKGKRKEDIERFINDGV-YKVERLKEEGFITNVLYD 346 (690)
Q Consensus 300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v-~~a~eAl~~GLID~i~~~ 346 (690)
.+.+.+.+.+++..|++.+++.+.++... ++++||+++||||+|...
T Consensus 143 ~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 143 FLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEecc
Confidence 77888888999999999999999998765 499999999999999753
No 141
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.7e-13 Score=145.44 Aligned_cols=170 Identities=22% Similarity=0.267 Sum_probs=135.8
Q ss_pred CCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEE
Q 005581 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVI 465 (690)
Q Consensus 386 ~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVV 465 (690)
.+++|.||+++|+|++ .+.+.+.+.|..|+++ +..+|||.+|+|||-+.+..+|.++|.+ ++.||+
T Consensus 24 ~~~~v~vi~i~g~I~~-----------~s~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~~--s~vPV~ 89 (436)
T COG1030 24 AEKKVYVIEIDGAIDP-----------ASADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAILN--SPVPVI 89 (436)
T ss_pred cCCeEEEEEecCccCH-----------HHHHHHHHHHHHHHhC-CCcEEEEEecCCCchHHHHHHHHHHHHc--CCCCEE
Confidence 3579999999999995 3578889999988865 5679999999999999888888888874 499999
Q ss_pred EEEC---ccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHH
Q 005581 466 ASMS---DVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAE 542 (690)
Q Consensus 466 a~v~---g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~ 542 (690)
.++. +.|+|+|.||+++||+++|.|.|.+|+--.+...++ +.++..
T Consensus 90 ~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~-------------------------------~~~~~~ 138 (436)
T COG1030 90 GYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGT-------------------------------SAKEAN 138 (436)
T ss_pred EEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCC-------------------------------Cccchh
Confidence 9984 579999999999999999999999997443322211 111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC-hHHHHHHHHH
Q 005581 543 LFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG-FSRAVAIAKQ 605 (690)
Q Consensus 543 ~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~-~~~ai~~a~~ 605 (690)
..+.+..|+...++.||++.+..+++.+ ...++++||++.|++|-+.. ..|++..+.-
T Consensus 139 -----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~~g 198 (436)
T COG1030 139 -----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKLDG 198 (436)
T ss_pred -----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHHccC
Confidence 4456677888899999999998888766 99999999999999999864 5666665443
No 142
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.48 E-value=8e-13 Score=145.63 Aligned_cols=155 Identities=12% Similarity=0.041 Sum_probs=112.6
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcchhhh---------hH---
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDALAS---------DL--- 450 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~~as---------~~--- 450 (690)
.+++++|+++.+-. .|+.+..+.++|.++|+.+.+|++|++|||+.+ |.||++... +.
T Consensus 49 ~~~~~~ItLNRP~~------lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~ 122 (407)
T PLN02851 49 RAKSRAAILNRPSS------LNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKL 122 (407)
T ss_pred ECCEEEEEECCCCc------CCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHH
Confidence 46789999998765 355667889999999999999999999999885 577765321 01
Q ss_pred ----HHHHHHHh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeec
Q 005581 451 ----MWREIRLL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIIS 521 (690)
Q Consensus 451 ----i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~ 521 (690)
+++....+ .-+|||||.|+|.|+|||+.|+++||++||++.+.++. ||+++.......+.
T Consensus 123 ~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~----------- 191 (407)
T PLN02851 123 FFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLS----------- 191 (407)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHH-----------
Confidence 11111122 33899999999999999999999999999999999873 56554433211111
Q ss_pred ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHH
Q 005581 522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRA 599 (690)
Q Consensus 522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~a 599 (690)
++ ........+++|+.++|++|+++||||++...++.
T Consensus 192 ------------------------------------rl-----~g~~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l 228 (407)
T PLN02851 192 ------------------------------------RL-----PGYLGEYLALTGQKLNGVEMIACGLATHYCLNARL 228 (407)
T ss_pred ------------------------------------Hh-----cCHHHHHHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence 00 01112345688999999999999999999876543
No 143
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.48 E-value=1.1e-13 Score=135.98 Aligned_cols=165 Identities=24% Similarity=0.340 Sum_probs=125.6
Q ss_pred CCCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhH--------------
Q 005581 385 GGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDL-------------- 450 (690)
Q Consensus 385 ~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~-------------- 450 (690)
+.+..|.||.+|.+-.. ++.+..+.+.+.+.++++..|+.+|.|+||--+||-...+.|.
T Consensus 36 g~~~GItvl~mNRpa~k------Nsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~f 109 (291)
T KOG1679|consen 36 GKDEGITILNMNRPAKK------NSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRF 109 (291)
T ss_pred CCCCCeEEEecCChhhh------ccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHH
Confidence 44567888888888763 4455677899999999999999999999998888744332211
Q ss_pred ------HHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeee
Q 005581 451 ------MWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEII 520 (690)
Q Consensus 451 ------i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i 520 (690)
++..|.++ +.||||++.|.|.|||..+|++||+++|..++.+|- .+++|+-.+.+.|..-+|+..
T Consensus 110 V~~lR~~~~dIe~L--p~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~al--- 184 (291)
T KOG1679|consen 110 VNGLRGLFNDIERL--PQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVAL--- 184 (291)
T ss_pred HHHHHHHHHHHHhC--CccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHH---
Confidence 22233334 999999999999999999999999999999999995 456777777766655555411
Q ss_pred cccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChH---
Q 005581 521 SRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFS--- 597 (690)
Q Consensus 521 ~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~--- 597 (690)
.-+.++++|+++|.||..+|||+.+....
T Consensus 185 ------------------------------------------------aKELIftarvl~g~eA~~lGlVnhvv~qneeg 216 (291)
T KOG1679|consen 185 ------------------------------------------------AKELIFTARVLNGAEAAKLGLVNHVVEQNEEG 216 (291)
T ss_pred ------------------------------------------------HHhHhhhheeccchhHHhcchHHHHHhcCccc
Confidence 33557999999999999999999986543
Q ss_pred -HHHHHHHHHcC
Q 005581 598 -RAVAIAKQKAN 608 (690)
Q Consensus 598 -~ai~~a~~~a~ 608 (690)
.+.+.|.++|.
T Consensus 217 daa~~kal~lA~ 228 (291)
T KOG1679|consen 217 DAAYQKALELAR 228 (291)
T ss_pred cHHHHHHHHHHH
Confidence 45555666554
No 144
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.48 E-value=9.8e-13 Score=130.42 Aligned_cols=161 Identities=17% Similarity=0.136 Sum_probs=134.5
Q ss_pred EEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Ccc
Q 005581 144 MKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCG 222 (690)
Q Consensus 144 I~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~aa 222 (690)
|-|.|+|.+.. ...++..|.....++..+-|.|.||||||++.+...|++.++.. ++||..++. .++
T Consensus 30 I~l~g~I~~~~---------a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~i---k~~V~ti~~G~Aa 97 (200)
T COG0740 30 IFLGGEIEDHM---------ANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI---KPPVSTICMGQAA 97 (200)
T ss_pred EEEeeeechHH---------HHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhc---CCCeEEEEecHHH
Confidence 88999998752 35688888888778889999999999999999999999999976 489999987 799
Q ss_pred hhhhHHhhccCee--EecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHH
Q 005581 223 EKEYYLACACEEL--YAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDN 300 (690)
Q Consensus 223 s~gY~LAsaaD~I--~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~ 300 (690)
|.|-.|++++++- |+-|++.+.++.+.+. . .+ ...+-+..-+.++.
T Consensus 98 Smgs~l~~aG~~g~r~~lPnsrimIHqP~gg------------------------------~-~G-~a~Di~i~A~ei~~ 145 (200)
T COG0740 98 SMGSVLLMAGDKGKRFALPNARIMIHQPSGG------------------------------A-QG-QASDIEIHAREILK 145 (200)
T ss_pred hHHHHHHhcCCCCCceeCCCceEEEecCCcc------------------------------C-cc-CHHHHHHHHHHHHH
Confidence 9999999999997 9999999999977210 0 11 12245556667888
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHhcCcc-cHHHHHhcCCeeEecchhH
Q 005581 301 IYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLYDDE 348 (690)
Q Consensus 301 ~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~-~a~eAl~~GLID~i~~~de 348 (690)
+.....+.+++..|.+.+++++..+...| +++||+++||||++....+
T Consensus 146 ~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 146 IKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 88999999999999999999998887655 9999999999999976544
No 145
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.46 E-value=1.6e-13 Score=135.06 Aligned_cols=161 Identities=22% Similarity=0.254 Sum_probs=120.7
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhh-------------------
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS------------------- 448 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as------------------- 448 (690)
+.||-|.++.|-+++ .....+..++++++..|+.|++|.+|+|.+|+.|+.+++|
T Consensus 27 ~giakItinRPevrN------AfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~ 100 (282)
T COG0447 27 DGIAKITINRPEVRN------AFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGI 100 (282)
T ss_pred CceEEEEecChhhhc------cCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccC
Confidence 589999999999864 4455678999999999999999999999998666555442
Q ss_pred -----hHHHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccc----cchHHHHHHcCCceee
Q 005581 449 -----DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGK----FNLGKLYEKIGFNKEI 519 (690)
Q Consensus 449 -----~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~----~~~~~l~~klGi~~~~ 519 (690)
-.+.+.|+.+ +|||||.|+|+|+|||-.+-+.||.-+|+.++++|--|.--+. ++.+.|....
T Consensus 101 ~rLnvLdlQrlIR~~--PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~V------ 172 (282)
T COG0447 101 PRLNVLDLQRLIRTM--PKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIV------ 172 (282)
T ss_pred cccchhhHHHHHHhC--CcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHh------
Confidence 1234455555 9999999999999999999999999999999999865532222 2222222111
Q ss_pred ecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHH-hcCCcccHHHHHHcCCcccccChHH
Q 005581 520 ISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEY-AQGRVWTGNDAASRGLVDALGGFSR 598 (690)
Q Consensus 520 i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l-~~Grv~tg~eA~e~GLVD~ig~~~~ 598 (690)
.....+++ +-+|.|+++||+++|||+.+.+.++
T Consensus 173 ----------------------------------------------GqKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~ 206 (282)
T COG0447 173 ----------------------------------------------GQKKAREIWFLCRQYDAEEALDMGLVNTVVPHAD 206 (282)
T ss_pred ----------------------------------------------hhhhhHHhhhhhhhccHHHHHhcCceeeeccHHH
Confidence 22234455 4599999999999999999999876
Q ss_pred HHHHHHHHcC
Q 005581 599 AVAIAKQKAN 608 (690)
Q Consensus 599 ai~~a~~~a~ 608 (690)
+.++..++|.
T Consensus 207 LE~e~v~W~~ 216 (282)
T COG0447 207 LEKETVQWAR 216 (282)
T ss_pred HHHHHHHHHH
Confidence 6555555443
No 146
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.43 E-value=3.5e-12 Score=127.87 Aligned_cols=159 Identities=13% Similarity=0.042 Sum_probs=125.7
Q ss_pred EEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Ccc
Q 005581 144 MKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCG 222 (690)
Q Consensus 144 I~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~aa 222 (690)
|-|.|+|.+.. ..+|+..|.....++.-+-|.|.||||||++.....|++.|+.++ -||++++. .|+
T Consensus 30 ifl~~~i~~~~---------a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~---~~V~Ti~~G~Aa 97 (201)
T PRK14513 30 IFVGTPIESQM---------ANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIK---APVSTICVGIAM 97 (201)
T ss_pred EEECCEEcHHH---------HHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcC---CCEEEEEEeeeh
Confidence 45677877643 457888888887666668899999999999999999999999774 57888887 799
Q ss_pred hhhhHHhhccCe--eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHH
Q 005581 223 EKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDN 300 (690)
Q Consensus 223 s~gY~LAsaaD~--I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~ 300 (690)
|.|.+|+++||+ ++|.|.+.++++.+... + .+...+ -+.....++.
T Consensus 98 S~As~il~aG~kgkR~~~pna~iMIHqp~~~-----------------------------~--~G~a~d-i~~~a~el~~ 145 (201)
T PRK14513 98 SMGSVLLMAGDKGKRMALPNSRIMIHQGSAG-----------------------------F--RGNTPD-LEVQAKEVLF 145 (201)
T ss_pred hhHHHHHhcCCCCcEEecCCeEEEEecCCCC-----------------------------C--CCCHHH-HHHHHHHHHH
Confidence 999999999997 89999999999976211 0 111122 2333334556
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHhcCcc-cHHHHHhcCCeeEecch
Q 005581 301 IYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLYD 346 (690)
Q Consensus 301 ~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~-~a~eAl~~GLID~i~~~ 346 (690)
+-+.+.+.+++..|++.+++.+.++...| +++||+++||||+|...
T Consensus 146 ~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 146 LRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEecc
Confidence 77788888899999999999999987655 99999999999999753
No 147
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7.3e-12 Score=126.44 Aligned_cols=160 Identities=16% Similarity=0.194 Sum_probs=123.4
Q ss_pred EEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcc
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~ 471 (690)
||++.++|++ ..++.++.+|-.+..++.-|-|.|.||||||++.+.-.||+.++.+ +-||-+.+-|.
T Consensus 94 Ii~lg~~Idd-----------~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~i--k~~V~Tic~G~ 160 (275)
T KOG0840|consen 94 IVFLGQPIDD-----------DVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYI--KPDVSTICVGL 160 (275)
T ss_pred eeeeCCcCcH-----------HHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhh--CCCceeeehhh
Confidence 6788899884 5688899999999999999999999999999999999999999988 66777777899
Q ss_pred ccHHHHHHHHhcC--eEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHH
Q 005581 472 AASGGYYMAMAAG--TILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ 549 (690)
Q Consensus 472 AaSGGy~iA~aaD--~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~ 549 (690)
|+|-|-.|.+++- +++|-|++.+...-..++ ..|...|+. +-.+.+.
T Consensus 161 Aas~aalLLaaG~KG~R~alPnsriMIhQP~gg------------------a~Gqa~Di~-------------i~akE~~ 209 (275)
T KOG0840|consen 161 AASMAALLLAAGAKGKRYALPNSRIMIHQPSGG------------------AGGQATDIV-------------IQAKELM 209 (275)
T ss_pred HHhHHHHHHhcCCCcceeecCCceeEEeccCCC------------------cCccchHHH-------------HHHHHHH
Confidence 9998888888875 699999998643221111 122222222 2223344
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHhc-CCcccHHHHHHcCCcccccC
Q 005581 550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGG 595 (690)
Q Consensus 550 ~~y~~F~~~Va~~R~~~~~~v~~l~~-Grv~tg~eA~e~GLVD~ig~ 595 (690)
...+...+..+++.|.+.+++++-.+ .+.++++||+++||||.|..
T Consensus 210 ~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 210 RIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence 44444445558889999999988666 89999999999999999864
No 148
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=99.34 E-value=3e-11 Score=122.44 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=128.3
Q ss_pred EEEEceeeccccccccC-CCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCC---------HHHHHHHHHHHHHHhhcCC
Q 005581 143 TMKLRGQIADQLKSRFS-SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG---------WGKVEEIRRHVVDFKKSGK 212 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~-~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~---------~~~~~eI~~aI~~~r~sgK 212 (690)
+|-|.|+|.+.....+. +.-....|+..|-....++.-+-|.|.||||||+ +.....|++.++.++ -
T Consensus 32 ii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~ik---~ 108 (222)
T PRK12552 32 IVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIK---P 108 (222)
T ss_pred EEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHHHHHHHHhcC---C
Confidence 46678888875221111 1123457888888887776778999999999987 667789999999875 4
Q ss_pred eEEEEec-CcchhhhHHhhccCe--eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHH
Q 005581 213 FIIGYVP-VCGEKEYYLACACEE--LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEE 289 (690)
Q Consensus 213 pVvAy~~-~aas~gY~LAsaaD~--I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e 289 (690)
+|.+++. .|+|.+.+|++++|+ .++.|.+.+.++..... . .+ +..
T Consensus 109 ~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~------------------------------~-~G-~A~ 156 (222)
T PRK12552 109 PVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSG------------------------------A-RG-QAT 156 (222)
T ss_pred CeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcc------------------------------c-cc-CHH
Confidence 6888877 799999999999997 78999999999965211 0 11 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcc-cHHHHHhcCCeeEecc
Q 005581 290 NCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVY-KVERLKEEGFITNVLY 345 (690)
Q Consensus 290 ~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~-~a~eAl~~GLID~i~~ 345 (690)
+-+.....++.+.+.+.+.+++..|++.+++.+.++...| +++||+++||||+|..
T Consensus 157 di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~ 213 (222)
T PRK12552 157 DIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLE 213 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEec
Confidence 3333444577788888999999999999999999988654 9999999999999964
No 149
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=99.33 E-value=1.2e-11 Score=129.66 Aligned_cols=166 Identities=12% Similarity=0.164 Sum_probs=118.5
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcC------CCCCCHHHH-----------HHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIE------PLSCGWGKV-----------EEI 200 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~------s~Gg~~~~~-----------~eI 200 (690)
++.|++|+|+.+=. .|..+...+.++.++++++..|+ |++|||..+ +.|+++... ..+
T Consensus 11 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 85 (261)
T PRK11423 11 INKIATITFNNPAK----RNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPL 85 (261)
T ss_pred ECCEEEEEEcCccc----cCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHH
Confidence 57899999988621 12223345778999999999888 999999864 235555432 224
Q ss_pred HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (690)
Q Consensus 201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e 279 (690)
++.+..+...+|||||.++ .|..+|+.|+++||.+++.+.+.++...+ ++|+.+. .+.
T Consensus 86 ~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~~~---------~g~ 144 (261)
T PRK11423 86 RQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPA------------NLGVPYN---------LSG 144 (261)
T ss_pred HHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchh------------hcCCCCC---------ccH
Confidence 4556667778999999999 46688999999999999999999999877 6777541 111
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
. ..+.+.+.. ...++ ++.|+.++++||+++||||++...+++.+.+.+.+
T Consensus 145 ~----------------------~~l~~~vg~------~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 195 (261)
T PRK11423 145 I----------------------LNFTNDAGF------HIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMA 195 (261)
T ss_pred H----------------------HHHHHHhHH------HHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHH
Confidence 1 113333332 22333 46789999999999999999998888776655443
No 150
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=99.32 E-value=1.5e-11 Score=128.88 Aligned_cols=167 Identities=15% Similarity=0.182 Sum_probs=120.2
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH---------------
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV--------------- 197 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~--------------- 197 (690)
.++.|++|+++.+= ..|..+...+.++.+.++++..|++|++|||...+ .|+++...
T Consensus 10 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK05995 10 QRGQVATVTLNRPD----VRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADA 85 (262)
T ss_pred eeCCEEEEEEcCcc----cccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHH
Confidence 35679999998762 11222334578899999999999999999998765 24554321
Q ss_pred HHHHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 198 EEIRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 198 ~eI~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
..+.+.+..+...+|||||.+++ |..+|+.|+++||.+++.+.+.++...+ ++|+-|.
T Consensus 86 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p~--------- 144 (262)
T PRK05995 86 RRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEV------------RLGLIPA--------- 144 (262)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCccc------------ccccCcc---------
Confidence 12334555666789999999995 6688999999999999999999999988 7777551
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~ 355 (690)
.+.++ +... +......+ ++.|..++++||+++||||++...+++.+.+.+
T Consensus 145 ~g~~~-----------------------l~~~------vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (262)
T PRK05995 145 TISPY-----------------------VIRA------MGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDE 195 (262)
T ss_pred chHHH-----------------------HHHH------hCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHH
Confidence 11110 1222 22333333 467899999999999999999988887766555
Q ss_pred Hh
Q 005581 356 RL 357 (690)
Q Consensus 356 ~~ 357 (690)
.+
T Consensus 196 ~a 197 (262)
T PRK05995 196 LL 197 (262)
T ss_pred HH
Confidence 43
No 151
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=1.8e-11 Score=127.96 Aligned_cols=167 Identities=17% Similarity=0.159 Sum_probs=119.6
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH----------HHHHHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV----------EEIRRH 203 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~----------~eI~~a 203 (690)
++.|++|+++.+= ..+..+...+.++.+.|+++..||.|++|||+..+ .|+++... ..+.+.
T Consensus 11 ~~~va~Itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06190 11 HDRVRTLTLNRPE----ARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNP 86 (258)
T ss_pred eCCEEEEEEcCCc----ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHH
Confidence 5679999998762 11222334578899999999999999999998764 35555432 123445
Q ss_pred HHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (690)
Q Consensus 204 I~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~ 282 (690)
+..+...+|||||.++ .|..+|+.|+++||.++|.+.+.++...+ ++|+-|. .+..+
T Consensus 87 ~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~---------~g~~~- 144 (258)
T PRK06190 87 SPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHA------------RVGILPG---------WGLSV- 144 (258)
T ss_pred HHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECccc------------ccCcCCC---------ccHHH-
Confidence 5667778999999999 57788999999999999999999998877 7777551 11111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 283 ~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
.+. |.+......+ ++.|..++++||+++||||++...+++.+...+.+
T Consensus 145 ---------------------~l~------r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 193 (258)
T PRK06190 145 ---------------------RLP------QKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLA 193 (258)
T ss_pred ---------------------HHH------HHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHH
Confidence 011 1222333333 46789999999999999999998888776655443
No 152
>PLN02600 enoyl-CoA hydratase
Probab=99.31 E-value=2e-11 Score=127.15 Aligned_cols=166 Identities=13% Similarity=0.098 Sum_probs=118.0
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH------------HHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV------------EEI 200 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~------------~eI 200 (690)
++.|++|+++.+= ..|..+...+.++.+.++++..|+.|++|||+... .|+++... ..+
T Consensus 2 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 77 (251)
T PLN02600 2 DSGIVELRLDRPE----AKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSL 77 (251)
T ss_pred CCcEEEEEEcCCc----ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHH
Confidence 5689999999862 11222334578999999999999999999998652 25555431 112
Q ss_pred HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (690)
Q Consensus 201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e 279 (690)
...+..+...+|||||.++ .|..+|+.|+++||.++|.+.+.++...+ ++|+-| ..+.
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~Gl~p---------~~g~ 136 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPET------------GLAIIP---------GAGG 136 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCccc------------ccCcCC---------CchH
Confidence 3345556677999999999 56788999999999999999999998877 667654 1111
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
.+. +... +......+ ++.|..++++||+++||||++...+++.+...+.
T Consensus 137 ~~~----------------------l~~~------~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~ 186 (251)
T PLN02600 137 TQR----------------------LPRL------VGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALEL 186 (251)
T ss_pred HHH----------------------HHHH------hCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHH
Confidence 110 1122 22222233 4678999999999999999999988887665543
No 153
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=1.9e-11 Score=127.94 Aligned_cols=168 Identities=19% Similarity=0.226 Sum_probs=120.3
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH---------------
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV--------------- 197 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~--------------- 197 (690)
.++.|++|+++.+=. .|..+...+.++.++|+++..|++|++|||+-+. .|+++...
T Consensus 9 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07511 9 REGSTLVLTLSNPGA----RNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASI 84 (260)
T ss_pred eECCEEEEEECCccc----ccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHH
Confidence 467899999998621 1222335578999999999999999999998754 24554332
Q ss_pred HHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 198 ~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
..+++.+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++...+ ++|+-| .
T Consensus 85 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~Gl~p---------~ 143 (260)
T PRK07511 85 DGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYV------------KVGLTP---------D 143 (260)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEecccc------------ccCcCC---------C
Confidence 1223444556667999999999 57788999999999999999999998877 777765 2
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~ 355 (690)
.+..+. +. |.+......+ ++.|..++++||++.||||++...+++.+...+
T Consensus 144 ~g~~~~----------------------l~------~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~ 195 (260)
T PRK07511 144 GGGSWF----------------------LA------RALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALAEALA 195 (260)
T ss_pred chHHHH----------------------HH------HHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHH
Confidence 222211 11 2223333333 467899999999999999999988877665554
Q ss_pred Hh
Q 005581 356 RL 357 (690)
Q Consensus 356 ~~ 357 (690)
.+
T Consensus 196 ~a 197 (260)
T PRK07511 196 LA 197 (260)
T ss_pred HH
Confidence 43
No 154
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=99.31 E-value=1.7e-11 Score=127.98 Aligned_cols=166 Identities=16% Similarity=0.160 Sum_probs=118.8
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH----------HHHHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE----------EIRRH 203 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~----------eI~~a 203 (690)
++.|++|+++.+= ..+..+...+.++.++++++..|+.|++|||+..+ .|+++.... ...+.
T Consensus 9 ~~~v~~itlnrp~----~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 84 (255)
T PRK09674 9 QQRVLLLTLNRPE----ARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQL 84 (255)
T ss_pred ECCEEEEEEcCCC----ccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHH
Confidence 5679999999862 11222334578999999999999999999998754 355554321 12234
Q ss_pred HHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581 204 VVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (690)
Q Consensus 204 I~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~ 282 (690)
+..+...+|||||.+++ |..+|..|+++||.+++.+.+.++...+ ++|+-| ..+..+
T Consensus 85 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p---------~~g~~~- 142 (255)
T PRK09674 85 WQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEI------------TLGIMP---------GAGGTQ- 142 (255)
T ss_pred HHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchh------------hcCCCC---------CccHHH-
Confidence 55566789999999995 6688999999999999999999999888 788865 111111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 283 ~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
.+... +......+ ++.|..++++||+++||||++...+++.+.+.+.
T Consensus 143 ---------------------~l~~~------ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~ 190 (255)
T PRK09674 143 ---------------------RLIRS------VGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQL 190 (255)
T ss_pred ---------------------HHHHH------hCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHH
Confidence 01112 22223333 4578999999999999999999888776655443
No 155
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=1.8e-11 Score=128.86 Aligned_cols=168 Identities=15% Similarity=0.179 Sum_probs=118.8
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHHH--------------
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE-------------- 198 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~~-------------- 198 (690)
.++.|++|+++.+= ..|..+...+.++.+.++++..|+.|++|||+.++. |+++....
T Consensus 12 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 87 (272)
T PRK06142 12 LADHVAQVTLNRPG----KGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARP 87 (272)
T ss_pred ecCCEEEEEEcCCC----ccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccc
Confidence 35779999998762 122223345789999999999999999999998652 45543321
Q ss_pred ---------HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEE
Q 005581 199 ---------EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQV 268 (690)
Q Consensus 199 ---------eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~ 268 (690)
.+.+.+..+....|||||.++ .|..+|+.|+++||.+++.+.+.++...+ ++|+-|
T Consensus 88 ~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p-- 153 (272)
T PRK06142 88 RTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREV------------DLGMVA-- 153 (272)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhh------------hhCCCC--
Confidence 122334556678999999999 46688999999999999999999999987 788866
Q ss_pred EeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecch-
Q 005581 269 QRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD- 346 (690)
Q Consensus 269 ~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~- 346 (690)
..+..++ +...+. .....+ ++.|..++++||+++||||++...
T Consensus 154 -------~~g~~~~----------------------l~~~~G------~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~ 198 (272)
T PRK06142 154 -------DVGSLQR----------------------LPRIIG------DGHLRELALTGRDIDAAEAEKIGLVNRVYDDA 198 (272)
T ss_pred -------CchHHHH----------------------HHHHhC------HHHHHHHHHhCCCcCHHHHHHcCCccEecCCH
Confidence 2222211 122222 222333 567899999999999999999874
Q ss_pred hHHHHHHHHHh
Q 005581 347 DEVISMLKERL 357 (690)
Q Consensus 347 de~~~~l~~~~ 357 (690)
+++.+.+.+.+
T Consensus 199 ~~l~~~a~~~a 209 (272)
T PRK06142 199 DALLAAAHATA 209 (272)
T ss_pred HHHHHHHHHHH
Confidence 77765554433
No 156
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=1.9e-11 Score=127.62 Aligned_cols=167 Identities=15% Similarity=0.131 Sum_probs=118.7
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH------------HH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV------------EE 199 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~------------~e 199 (690)
.++.|++|+++.+= ..+..+...+.++.++++++..|+.|++|||.-.+ .|+++... ..
T Consensus 13 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06143 13 DDRGVATLTIRNAG----SLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISR 88 (256)
T ss_pred cCCCEEEEEEcCCc----ccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHH
Confidence 35789999999861 12222335578999999999999999999998854 24444331 11
Q ss_pred HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
+.+.+..+....|||||.+++ |..+|..|+++||.+++.+.+.++...+ ++|+ |. .+
T Consensus 89 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~G~-p~---------~~ 146 (256)
T PRK06143 89 LRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEV------------RVGI-PS---------VI 146 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCcc------------ccCC-CC---------cc
Confidence 233455566779999999995 6689999999999999999999999887 6776 41 01
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
..+ .+ .|-+......+ ++.|..++++||+++||||++...+++.+.+.+.+
T Consensus 147 ~~~----------------------~l------~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (256)
T PRK06143 147 HAA----------------------LL------PRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLA 198 (256)
T ss_pred HHH----------------------HH------HHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHH
Confidence 111 01 11122333333 46789999999999999999998888776655443
No 157
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=99.31 E-value=2.1e-11 Score=127.76 Aligned_cols=166 Identities=20% Similarity=0.164 Sum_probs=118.7
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH----------HHHHHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV----------EEIRRH 203 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~----------~eI~~a 203 (690)
++.|++|.++.+=. .+..+...+.++.++++++..|+.|++|||+..+ .|+++... ..+.+.
T Consensus 15 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 90 (261)
T PRK08138 15 ADGVALLRLNRPEA----RNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERY 90 (261)
T ss_pred cCCEEEEEEcCCcc----cCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHH
Confidence 56789999987621 1222334578899999999999999999998754 24555331 123344
Q ss_pred HHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581 204 VVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (690)
Q Consensus 204 I~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~ 282 (690)
+..+...+|||||.+++ |..+|+.|+++||.+++.+.+.++...+ ++|+-| ..+..+.
T Consensus 91 ~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~g~~~~ 149 (261)
T PRK08138 91 WEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEI------------KVGLMP---------GAGGTQR 149 (261)
T ss_pred HHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCccc------------ccccCC---------CCcHHHH
Confidence 55666789999999994 6688999999999999999999999887 777765 2221110
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 283 ~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
+... +......+ ++.|..++++||+++||||++...+++.+...+.
T Consensus 150 ----------------------l~~~------vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (261)
T PRK08138 150 ----------------------LVRA------VGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALEL 196 (261)
T ss_pred ----------------------HHHH------hCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHH
Confidence 1222 22333333 4578999999999999999999888877655443
No 158
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=99.30 E-value=1.9e-11 Score=127.68 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=119.0
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH----------HHHHHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV----------EEIRRH 203 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~----------~eI~~a 203 (690)
++.|++|+++.+= ..+..+...+.++.+.++++..|+.|++|||+... .|+++... ..+.+.
T Consensus 11 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (257)
T PRK05862 11 RGRVGLITLNRPK----ALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITN 86 (257)
T ss_pred eCCEEEEEEcCCc----ccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHH
Confidence 5679999998762 11222334578999999999999999999998764 24554322 122334
Q ss_pred HHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (690)
Q Consensus 204 I~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~ 282 (690)
+..+...+|||||.++ .|..+|+.|+++||.+++.+.+.++...+ ++|+-| ..+..+
T Consensus 87 ~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p---------~~g~~~- 144 (257)
T PRK05862 87 WEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEI------------KLGVLP---------GMGGSQ- 144 (257)
T ss_pred HHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchh------------ccCcCC---------CccHHH-
Confidence 4556678999999999 56788999999999999999999999877 777755 111111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 283 ~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
.+...+ ......+ ++.|..++++||+++||||++...+++.+...+.+
T Consensus 145 ---------------------~l~~~v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (257)
T PRK05862 145 ---------------------RLTRAV------GKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAA 193 (257)
T ss_pred ---------------------HHHHHh------CHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHH
Confidence 112222 2222233 56789999999999999999998888776655543
No 159
>PRK05869 enoyl-CoA hydratase; Validated
Probab=99.30 E-value=2.4e-11 Score=124.30 Aligned_cols=167 Identities=11% Similarity=0.070 Sum_probs=121.2
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH------------HHH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------EEI 200 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~------------~eI 200 (690)
.++.|++|+++.+ + . +..+...+.++.+.++++..|++|++|||+..+ .|+++... +.+
T Consensus 14 ~~~~i~~itlnrp--~--~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 88 (222)
T PRK05869 14 QDAGLATLLLSRP--P--T-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVR 88 (222)
T ss_pred ccCCEEEEEECCC--C--C-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHH
Confidence 4678999999987 2 1 223345578999999999999999999998754 25554432 122
Q ss_pred HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (690)
Q Consensus 201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e 279 (690)
.+.+.++...+|||||.++ .|..+|..|+++||.++|.+.+.++...+ ++|+-| ..+.
T Consensus 89 ~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~g~ 147 (222)
T PRK05869 89 QQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEI------------LAGLAP---------SGDG 147 (222)
T ss_pred HHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchh------------ccCCCC---------CccH
Confidence 3455566778999999999 46688999999999999999999999877 677755 1111
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
.+ .+. |.+......+ ++.|..++++||+++||||++...+++.+...+.+
T Consensus 148 ~~----------------------~l~------~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (222)
T PRK05869 148 MA----------------------RLT------RAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWA 198 (222)
T ss_pred HH----------------------HHH------HHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHH
Confidence 10 011 2223333333 56789999999999999999998888877665544
No 160
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=99.30 E-value=2.7e-11 Score=126.63 Aligned_cols=168 Identities=19% Similarity=0.191 Sum_probs=119.2
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH-----------HHHH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV-----------EEIR 201 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~-----------~eI~ 201 (690)
.++.|++|.++.+= ..+..+...+.++.+.++++..|+.|++|||..+. .|+++... ..+.
T Consensus 11 ~~~~v~~i~lnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (259)
T PRK06688 11 LEDGVLTITINRPD----KKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVN 86 (259)
T ss_pred EECCEEEEEecCcc----cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHH
Confidence 35679999998751 11222334578999999999999999999998654 24444321 2234
Q ss_pred HHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCc
Q 005581 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (690)
Q Consensus 202 ~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep 280 (690)
+.+..+...+|||||.++ .|.++|..|+++||.+++.+.+.++...+ ++|+-| ..+..
T Consensus 87 ~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~G~~p---------~~g~~ 145 (259)
T PRK06688 87 RFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFA------------KLGLCP---------DAGGS 145 (259)
T ss_pred HHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchh------------hcCCCC---------Ccchh
Confidence 455566678999999999 57788999999999999999999999887 777765 11111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 281 ~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
+. +...+. .....+ ++.|..++++||++.||||++...+++.+.+.+.+
T Consensus 146 ~~----------------------l~~~~G------~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a 195 (259)
T PRK06688 146 AL----------------------LPRLIG------RARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQA 195 (259)
T ss_pred hH----------------------HHHHhh------HHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHH
Confidence 10 111121 222222 46789999999999999999998887776655544
No 161
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=99.30 E-value=3.1e-11 Score=126.52 Aligned_cols=164 Identities=15% Similarity=0.180 Sum_probs=118.5
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH---------------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE--------------- 198 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~--------------- 198 (690)
.+.|++|+++.+=. .|..+...+.++.+.++++..|+.|++|||+.++ .|+++....
T Consensus 12 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (262)
T PRK07468 12 ARGVATLTLNRPEK----HNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEAR 87 (262)
T ss_pred CCcEEEEEEcCccc----ccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHH
Confidence 35799999997621 2223345678899999999999999999998764 255554211
Q ss_pred HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (690)
Q Consensus 199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa 277 (690)
.+.+.+..++..+|||||.++ .|..+|+.|+++||.+++.+.+.++...+ ++|+-|. .
T Consensus 88 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~------------~~Gl~p~---------~ 146 (262)
T PRK07468 88 RLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTET------------RLGLIPA---------T 146 (262)
T ss_pred HHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchh------------ccCCCcc---------c
Confidence 123345566778999999999 46688999999999999999999999887 7787662 1
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (690)
Q Consensus 278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~ 355 (690)
+.++ +... +......+ ++.|..++++||+++||||++...+++.+.+.+
T Consensus 147 g~~~-----------------------~~~~------vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~ 196 (262)
T PRK07468 147 ISPY-----------------------VVAR------MGEANARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEA 196 (262)
T ss_pred chhh-----------------------HHhh------ccHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHH
Confidence 1221 1111 33333334 467899999999999999999988877655443
No 162
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=99.30 E-value=2.7e-11 Score=126.58 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=119.0
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-----CCCHHHH-----------HHH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV-----------EEI 200 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-----Gg~~~~~-----------~eI 200 (690)
.++.|++|+++.+= ..|..+...+.++.++++.+..|+.|++|||+-+++ |+++... ..+
T Consensus 8 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (256)
T TIGR03210 8 KRNGIAWIMINRPA----KMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPM 83 (256)
T ss_pred eeCCEEEEEEcCCc----cccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHH
Confidence 35679999998761 222233345788999999999999999999987652 5555432 112
Q ss_pred HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (690)
Q Consensus 201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e 279 (690)
.+.+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++...+ ++|+-+ ..+.
T Consensus 84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~G~~~---------~~~~ 142 (256)
T TIGR03210 84 EELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGP------------KVGSVD---------PGYG 142 (256)
T ss_pred HHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccc------------cccccC---------CccH
Confidence 3445566678999999999 56788999999999999999999999877 666543 0000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
.+ .+... +......+ ++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 143 ~~----------------------~l~~~------vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (256)
T TIGR03210 143 TA----------------------LLARV------VGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWC 193 (256)
T ss_pred HH----------------------HHHHH------hCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHH
Confidence 00 01222 22233333 45689999999999999999998888776655544
No 163
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=99.29 E-value=3.9e-11 Score=125.98 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=117.2
Q ss_pred CCeEEEEEEceeeccccccccCCC-CCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH---------------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSG-LSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV--------------- 197 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~-~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~--------------- 197 (690)
++.|++|+++.+=.. +..+. ..+.++.+.++++..||.|++|||...+ .|+++...
T Consensus 10 ~~~v~~itlnrp~~~----Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (266)
T PRK09245 10 DGHIVTLTMNRPETR----NALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIR 85 (266)
T ss_pred ECCEEEEEECCcccc----cCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHH
Confidence 568999999986221 11121 2467899999999999999999998764 24444322
Q ss_pred HH----HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeec
Q 005581 198 EE----IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIG 272 (690)
Q Consensus 198 ~e----I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G 272 (690)
.. +.+.+..+....|||||.+++ |..+|+.|+++||.+++.+.+.++...+ ++|+-|
T Consensus 86 ~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~G~~p------ 147 (266)
T PRK09245 86 QGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFV------------KLGLIP------ 147 (266)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEccccc------------ccCcCC------
Confidence 11 223345566779999999994 6688999999999999999999999877 777765
Q ss_pred cccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHH
Q 005581 273 KYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVIS 351 (690)
Q Consensus 273 ~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~ 351 (690)
..+..+. +...|... ...+ ++.|..++++||++.||||++...+++.+
T Consensus 148 ---~~g~~~~----------------------l~~~vG~~------~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 196 (266)
T PRK09245 148 ---GDGGAWL----------------------LPRIIGMA------RAAEMAFTGDAIDAATALEWGLVSRVVPADQLLP 196 (266)
T ss_pred ---Ccchhhh----------------------HHHHhhHH------HHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHH
Confidence 2222221 11222222 2222 46789999999999999999998888776
Q ss_pred HHHHHh
Q 005581 352 MLKERL 357 (690)
Q Consensus 352 ~l~~~~ 357 (690)
.+.+.+
T Consensus 197 ~a~~~a 202 (266)
T PRK09245 197 AARALA 202 (266)
T ss_pred HHHHHH
Confidence 655443
No 164
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=99.29 E-value=2.7e-11 Score=126.43 Aligned_cols=166 Identities=16% Similarity=0.098 Sum_probs=116.7
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH-----------HH---
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-----------EE--- 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~-----------~e--- 199 (690)
++.|++|+++.+= ..|..+...+.++.++|+++..|+ +++|||+..+. |+++... ..
T Consensus 6 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T TIGR02280 6 EAGVARLTLNRPD----KLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIET 80 (256)
T ss_pred ECCEEEEEecCcc----cccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHH
Confidence 5789999998761 112223345789999999999999 99999987652 4444321 11
Q ss_pred -HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581 200 -IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (690)
Q Consensus 200 -I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa 277 (690)
+...+..+...+|||||.++ .|..+|+.|+++||.++|.+++.++...+ ++|+-|. .
T Consensus 81 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~------------~lG~~p~---------~ 139 (256)
T TIGR02280 81 FYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFA------------KIGLIPD---------S 139 (256)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhh------------hcCCCCC---------c
Confidence 12234556678999999999 56688999999999999999999998876 7787651 1
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
+..+. +...| ......+ ++.|+.++++||+++||||++...+++.+.+.+.
T Consensus 140 g~~~~----------------------l~~~v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 191 (256)
T TIGR02280 140 GGTWS----------------------LPRLV------GRARAMGLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQAL 191 (256)
T ss_pred cHHHH----------------------HHHHh------CHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHH
Confidence 11110 11112 2222233 4678999999999999999999888877665544
Q ss_pred h
Q 005581 357 L 357 (690)
Q Consensus 357 ~ 357 (690)
+
T Consensus 192 a 192 (256)
T TIGR02280 192 A 192 (256)
T ss_pred H
Confidence 3
No 165
>PLN02888 enoyl-CoA hydratase
Probab=99.29 E-value=3.5e-11 Score=126.33 Aligned_cols=167 Identities=18% Similarity=0.170 Sum_probs=117.6
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH---------HHHHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE---------IRRHV 204 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e---------I~~aI 204 (690)
++.|++|+++.+= ..|..+...+.++.++++++..|++|++|||+-.+ .|+++....+ ..+.+
T Consensus 17 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 92 (265)
T PLN02888 17 RNGIATITINRPK----ALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPV 92 (265)
T ss_pred cCCEEEEEEcCCC----cccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHH
Confidence 5678888888751 11222334578899999999999999999998764 2556543221 12344
Q ss_pred HHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccC
Q 005581 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (690)
Q Consensus 205 ~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~ 283 (690)
..+...+|||||.++ .|..+|..|+++||.+++.+++.++...+ ++|+-| ..+..+.
T Consensus 93 ~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~p---------~~g~~~~- 150 (265)
T PLN02888 93 AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHA------------KFGIFP---------SWGLSQK- 150 (265)
T ss_pred HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccc------------cccCCC---------CccHhhH-
Confidence 556677899999999 46688999999999999999999988776 777755 1111110
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 284 ~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
+... +......+ ++.|..++++||+++||||++...+++.+...+.+
T Consensus 151 ---------------------l~~~------vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (265)
T PLN02888 151 ---------------------LSRI------IGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVA 198 (265)
T ss_pred ---------------------HHHH------hCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHH
Confidence 1112 22223333 46789999999999999999998887766554443
No 166
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=3.3e-11 Score=128.53 Aligned_cols=167 Identities=14% Similarity=0.078 Sum_probs=118.3
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH---------------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE--------------- 198 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~--------------- 198 (690)
++.|++|+++.+=. .|..+.-.+.+|.++|+.+..|+.|++|||.-++ .|+++....
T Consensus 11 ~~~v~~itlnrp~~----~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (296)
T PRK08260 11 ADGIATITLNRPDK----LNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEAD 86 (296)
T ss_pred eCCEEEEEeCCCcc----cCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccc
Confidence 57899999987621 1222334577899999999999999999998764 244443210
Q ss_pred ----------HH----HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcC
Q 005581 199 ----------EI----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVG 263 (690)
Q Consensus 199 ----------eI----~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlG 263 (690)
.+ .+.+..+....|||||.++ .|..+|+.|+++||.+++.+.+.++...+ ++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~~G 154 (296)
T PRK08260 87 EEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFG------------RRG 154 (296)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchh------------hcC
Confidence 11 2244556677899999999 57788999999999999999999999877 778
Q ss_pred ceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeE
Q 005581 264 IEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITN 342 (690)
Q Consensus 264 I~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~ 342 (690)
+-| ..+.+++ +... +......+ ++.|+.++++||+++||||+
T Consensus 155 l~p---------~~g~~~~----------------------l~r~------vG~~~A~~llltg~~~~a~eA~~~GLv~~ 197 (296)
T PRK08260 155 IVP---------EAASSWF----------------------LPRL------VGLQTALEWVYSGRVFDAQEALDGGLVRS 197 (296)
T ss_pred cCC---------Ccchhhh----------------------HHHh------hCHHHHHHHHHcCCccCHHHHHHCCCcee
Confidence 766 2222221 1111 22222333 56789999999999999999
Q ss_pred ecchhHHHHHHHHHh
Q 005581 343 VLYDDEVISMLKERL 357 (690)
Q Consensus 343 i~~~de~~~~l~~~~ 357 (690)
+...+++.+.+.+.+
T Consensus 198 vv~~~~l~~~a~~~a 212 (296)
T PRK08260 198 VHPPDELLPAARALA 212 (296)
T ss_pred ecCHHHHHHHHHHHH
Confidence 998888776655443
No 167
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=99.28 E-value=3.2e-11 Score=126.17 Aligned_cols=167 Identities=14% Similarity=0.078 Sum_probs=117.9
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-----CCCHHHHH-------------H
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE-------------E 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-----Gg~~~~~~-------------e 199 (690)
++.|++|+++.+= ..|..+...+.++.++++++..|+.|++|||+-.++ |+++.... .
T Consensus 10 ~~~v~~itlnrp~----~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (259)
T TIGR01929 10 TDGIAKITINRPQ----VRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLN 85 (259)
T ss_pred CCCEEEEEecCCc----cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHH
Confidence 5789999999762 112223345788999999999999999999988652 45543211 1
Q ss_pred HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
+.+.+..+...+|||||.++ .|..+|+.|+++||.+++.+.+.++...+ ++|+-| ..+
T Consensus 86 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~G~~p---------~~~ 144 (259)
T TIGR01929 86 VLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGP------------KVGSFD---------GGY 144 (259)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCccc------------ccccCC---------Ccc
Confidence 22344456677999999999 56788999999999999999999999877 677654 111
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
... .+...+... ...+ ++.|..++++||+++||||++...+++.+.+.+.+
T Consensus 145 ~~~----------------------~l~~~vG~~------~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (259)
T TIGR01929 145 GSS----------------------YLARIVGQK------KAREIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWC 196 (259)
T ss_pred HHH----------------------HHHHHhHHH------HHHHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHH
Confidence 110 122222222 2223 46789999999999999999998888776655443
No 168
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=99.28 E-value=3e-11 Score=126.86 Aligned_cols=166 Identities=11% Similarity=0.127 Sum_probs=119.0
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH---------------H
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV---------------E 198 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~---------------~ 198 (690)
++.|++|+++.+=. .+..+...+.++.++++.+..|+.|++|||.-.+ .|+++... .
T Consensus 13 ~~~v~~itlnrp~~----~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 88 (265)
T PRK05674 13 PRGFATLWLSRADK----NNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDAR 88 (265)
T ss_pred CCCEEEEEecCccc----ccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHH
Confidence 35799999987621 1222334578899999999999999999998764 34554321 1
Q ss_pred HHHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581 199 EIRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (690)
Q Consensus 199 eI~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa 277 (690)
.+.+.+..++...|||||.+++ |..+|..|+++||.+++.+.+.++...+ ++|+-|. .
T Consensus 89 ~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gi~p~---------~ 147 (265)
T PRK05674 89 ELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEV------------RIGLAPA---------V 147 (265)
T ss_pred HHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCccc------------ccCCCcc---------h
Confidence 2344556677789999999995 6688999999999999999999999877 7777551 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
+.++ +...|. .....+ ++.|+.++++||+++||||++...+++.+.+.+.
T Consensus 148 ~~~~-----------------------l~~~vG------~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 198 (265)
T PRK05674 148 ISPF-----------------------VVKAIG------ERAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAW 198 (265)
T ss_pred hHHH-----------------------HHHHhC------HHHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHH
Confidence 0000 122222 222223 4678999999999999999999888877766554
Q ss_pred h
Q 005581 357 L 357 (690)
Q Consensus 357 ~ 357 (690)
+
T Consensus 199 a 199 (265)
T PRK05674 199 I 199 (265)
T ss_pred H
Confidence 4
No 169
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=99.28 E-value=2.8e-11 Score=127.72 Aligned_cols=166 Identities=13% Similarity=0.170 Sum_probs=117.3
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHHH--------------
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE-------------- 198 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~~-------------- 198 (690)
.++.|++|.++.+= ..|..+...+.++.++|+++..|+.|++|||...+. |+++....
T Consensus 14 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PLN02664 14 PNSSVFHLNLNRPS----QRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS 89 (275)
T ss_pred CCCCEEEEEECCCC----ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence 46789999999872 122223345789999999999999999999987652 45543221
Q ss_pred --H-------HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEE
Q 005581 199 --E-------IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQV 268 (690)
Q Consensus 199 --e-------I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~ 268 (690)
. +.+.+..+...+|||||.++ .|..+|..|+++||.+++.+++.|+...+ ++|+.|
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p-- 155 (275)
T PLN02664 90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEV------------DLAITA-- 155 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHH------------hhCCCC--
Confidence 1 12334456678999999999 57788999999999999999999999877 778765
Q ss_pred EeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecch-
Q 005581 269 QRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD- 346 (690)
Q Consensus 269 ~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~- 346 (690)
..+..+. +... +......+ ++.|..++++||++.||||++...
T Consensus 156 -------~~g~~~~----------------------l~~~------vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 200 (275)
T PLN02664 156 -------DLGTLQR----------------------LPSI------VGYGNAMELALTGRRFSGSEAKELGLVSRVFGSK 200 (275)
T ss_pred -------CccHHHH----------------------HHHH------hCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCCh
Confidence 1111110 1112 22222333 467899999999999999999874
Q ss_pred hHHHHHHHH
Q 005581 347 DEVISMLKE 355 (690)
Q Consensus 347 de~~~~l~~ 355 (690)
+++.+.+.+
T Consensus 201 ~~l~~~~~~ 209 (275)
T PLN02664 201 EDLDEGVRL 209 (275)
T ss_pred hHHHHHHHH
Confidence 666654443
No 170
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=3.3e-11 Score=126.77 Aligned_cols=167 Identities=14% Similarity=0.136 Sum_probs=119.6
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-----CCCHHHH----------HH---
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV----------EE--- 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-----Gg~~~~~----------~e--- 199 (690)
++.|++|.++.+= ..|..+...+.++.+.++++..|+.|++|||+-... |+++... ..
T Consensus 18 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 93 (269)
T PRK06127 18 TGGLGRITFNNPA----RHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQ 93 (269)
T ss_pred ECCEEEEEecCCC----ccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHH
Confidence 5679999998762 222233456789999999999999999999998641 5555321 11
Q ss_pred -HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581 200 -IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (690)
Q Consensus 200 -I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa 277 (690)
+...+..++..+|||||.+++ |..+|..|+++||.+++.+.+.++...+ ++|+-| ..
T Consensus 94 ~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~------------~~Gl~p---------~~ 152 (269)
T PRK06127 94 AVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAA------------RLGLGY---------GY 152 (269)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchh------------hhCCCC---------Cc
Confidence 223445566789999999994 6688999999999999999999999877 777755 11
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
+..+ .+...+ ......+ ++.|..++++||+++||||++...+++.+.+.+.
T Consensus 153 g~~~----------------------~l~~~v------G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 204 (269)
T PRK06127 153 DGVK----------------------NLVDLV------GPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADY 204 (269)
T ss_pred cHHH----------------------HHHHHh------CHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHH
Confidence 1111 011222 2223333 5678999999999999999999888887665554
Q ss_pred h
Q 005581 357 L 357 (690)
Q Consensus 357 ~ 357 (690)
+
T Consensus 205 a 205 (269)
T PRK06127 205 A 205 (269)
T ss_pred H
Confidence 4
No 171
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=3.7e-11 Score=125.35 Aligned_cols=166 Identities=15% Similarity=0.125 Sum_probs=116.5
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHHH--------H----HH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------E----IR 201 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~~--------e----I~ 201 (690)
++.|++|+++.+=. .|..+...+.++.++|+++..|++|++|||...+. |+++.... + ..
T Consensus 6 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 81 (255)
T PRK06563 6 RGHVLLIGLDRPAK----RNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGI 81 (255)
T ss_pred ECCEEEEEECCccc----ccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhh
Confidence 56899999998721 12223345788999999999999999999987642 45543211 0 11
Q ss_pred HHH-HHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581 202 RHV-VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (690)
Q Consensus 202 ~aI-~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e 279 (690)
+.+ ..++...|||||.++ .|..+|..|+++||.++|.+++.++...+ ++|+-| ..+.
T Consensus 82 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~p---------~~g~ 140 (255)
T PRK06563 82 DPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEV------------QRGILP---------FGGA 140 (255)
T ss_pred HHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhh------------hcCCCC---------CccH
Confidence 122 235567899999999 57789999999999999999999999877 777754 1111
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
.+ .+...|.. ....+ ++.|..++++||++.||||++...+++.+...+.
T Consensus 141 ~~----------------------~l~~~vG~------~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 190 (255)
T PRK06563 141 TL----------------------RFPQAAGW------GNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIEL 190 (255)
T ss_pred HH----------------------HHHHHhhH------HHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHH
Confidence 11 12222222 22233 5678999999999999999999888877655543
No 172
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=99.28 E-value=4.5e-11 Score=124.50 Aligned_cols=165 Identities=14% Similarity=0.138 Sum_probs=117.3
Q ss_pred eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH-----------HHHHHHH
Q 005581 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV-----------EEIRRHV 204 (690)
Q Consensus 140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~-----------~eI~~aI 204 (690)
.|++|+++.+= ..+-.+...+.++.++++++..|++|++|||.-.. .|+++... ..+.+.+
T Consensus 15 ~v~~itlnrp~----~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 90 (251)
T PRK06023 15 GVQVIRFNRPE----KKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFL 90 (251)
T ss_pred cEEEEEecCcc----cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHH
Confidence 49999998762 11222334578899999999999999999998753 34554321 1233455
Q ss_pred HHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccC
Q 005581 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (690)
Q Consensus 205 ~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~ 283 (690)
..++..+|||||.++ .|..+|..|+++||.+++.+.+.|+...+ ++|+-| ..+..+.
T Consensus 91 ~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~------------~~Gl~p---------~~g~~~~- 148 (251)
T PRK06023 91 IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFV------------DLALVP---------EAGSSLL- 148 (251)
T ss_pred HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCccc------------ccCCCC---------CchHHHH-
Confidence 667778999999999 57788999999999999999999998877 777755 1111110
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 284 ~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
+...+ ......+ ++.|+.++++||+++||||++...+++.+.+.+.+
T Consensus 149 ---------------------l~~~~------g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (251)
T PRK06023 149 ---------------------APRLM------GHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAA 196 (251)
T ss_pred ---------------------HHHHH------hHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHH
Confidence 11111 2222333 45789999999999999999998888776554443
No 173
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=3.1e-11 Score=126.31 Aligned_cols=168 Identities=11% Similarity=0.135 Sum_probs=119.0
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH------------HH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV------------EE 199 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~------------~e 199 (690)
.++.|++|+++.+=. .|..+...+.++.+.|+++..||.|++|||+.++ .|+++... ..
T Consensus 9 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK05980 9 IRDGIALLTLNRPEK----LNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRD 84 (260)
T ss_pred EECCEEEEEECCccc----ccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHH
Confidence 357799999987621 1222334578899999999999999999999865 24554321 11
Q ss_pred H----HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccc
Q 005581 200 I----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (690)
Q Consensus 200 I----~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~y 274 (690)
+ .+.+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++...+ ++|+-|
T Consensus 85 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~Gl~p-------- 144 (260)
T PRK05980 85 FVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEI------------RLGMPP-------- 144 (260)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCccc------------ccCCCC--------
Confidence 1 1234455567899999999 56788999999999999999999999888 777765
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHH
Q 005581 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISML 353 (690)
Q Consensus 275 Ksa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l 353 (690)
..+..+. + .|.+......+ ++.|..++++||+++||||++...+++.+.+
T Consensus 145 -~~g~~~~----------------------l------~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 195 (260)
T PRK05980 145 -TFGGTQR----------------------L------PRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAA 195 (260)
T ss_pred -CchHhhH----------------------H------HhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHH
Confidence 2222211 1 12223333334 4678999999999999999999888887766
Q ss_pred HHHh
Q 005581 354 KERL 357 (690)
Q Consensus 354 ~~~~ 357 (690)
.+.+
T Consensus 196 ~~~a 199 (260)
T PRK05980 196 RALA 199 (260)
T ss_pred HHHH
Confidence 5544
No 174
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=4.6e-11 Score=125.81 Aligned_cols=167 Identities=14% Similarity=0.144 Sum_probs=117.9
Q ss_pred CC-eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH--------------
Q 005581 138 KG-SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE-------------- 198 (690)
Q Consensus 138 ~~-~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~-------------- 198 (690)
++ .|++|+++.+= ..+..+...+.++.+.|+++..|+.|++|||+..+ .|+++....
T Consensus 12 ~~~~v~~itlnrp~----~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 87 (272)
T PRK06210 12 ADSGVAVITLNRPD----RLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVR 87 (272)
T ss_pred CCCCEEEEEeCCcc----cccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccch
Confidence 45 79999998761 12222334578999999999999999999998754 245544321
Q ss_pred --------HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEE
Q 005581 199 --------EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQ 269 (690)
Q Consensus 199 --------eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~ 269 (690)
.+.+.+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++...+ ++|+-|
T Consensus 88 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~Gl~p--- 152 (272)
T PRK06210 88 PFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFA------------RRGLIA--- 152 (272)
T ss_pred hhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHH------------hcCCCC---
Confidence 011224456667999999999 57788999999999999999999998766 677755
Q ss_pred eeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhH
Q 005581 270 RIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDE 348 (690)
Q Consensus 270 ~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de 348 (690)
..+.++. +. |-+......+ ++.|..++++||++.||||++...++
T Consensus 153 ------~~g~~~~----------------------l~------~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 198 (272)
T PRK06210 153 ------EHGISWI----------------------LP------RLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDE 198 (272)
T ss_pred ------CCchhhh----------------------hH------hhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHH
Confidence 1122221 11 1122333333 46789999999999999999998888
Q ss_pred HHHHHHHHh
Q 005581 349 VISMLKERL 357 (690)
Q Consensus 349 ~~~~l~~~~ 357 (690)
+.+.+.+.+
T Consensus 199 l~~~a~~~a 207 (272)
T PRK06210 199 LMERTLAYA 207 (272)
T ss_pred HHHHHHHHH
Confidence 776655544
No 175
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=99.27 E-value=2.7e-11 Score=125.48 Aligned_cols=168 Identities=18% Similarity=0.190 Sum_probs=120.8
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH------------HHHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------EEIR 201 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~------------~eI~ 201 (690)
++.|++|.++.+=. .+..+...+.++.++|+.+..|++|++|++.-.. .|+++... ..+.
T Consensus 5 ~~~v~~i~ln~p~~----~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 80 (245)
T PF00378_consen 5 EDGVATITLNRPEK----RNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQ 80 (245)
T ss_dssp ETTEEEEEEECGGG----TTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCC----CCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhc
Confidence 57899999998822 1222334578999999999999999988887543 25565433 2345
Q ss_pred HHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCc
Q 005581 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (690)
Q Consensus 202 ~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep 280 (690)
+.+..+...+|||||.++ .|..+|..++++||.+++.+.+.++...+ ++|+-| ..+..
T Consensus 81 ~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~G~~p---------~~g~~ 139 (245)
T PF00378_consen 81 ELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEV------------RLGIFP---------GAGGT 139 (245)
T ss_dssp HHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGG------------GGTSSS---------TSTHH
T ss_pred cccccchhhhhheeecccccccccccccccccceEEeecccceeeeec------------ccCccc---------ccccc
Confidence 556667778999999999 46688999999999999999999999988 777766 22111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 281 ~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
+ .+...+...+. .+-++.|..++++||++.||||++...+++.+.+.+.+
T Consensus 140 ~----------------------~l~r~~g~~~a-----~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a 189 (245)
T PF00378_consen 140 F----------------------RLPRLIGPSRA-----RELLLTGEPISAEEALELGLVDEVVPDEELDEEALELA 189 (245)
T ss_dssp H----------------------HHHHHHHHHHH-----HHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHH
T ss_pred c----------------------ccceeeecccc-----cccccccccchhHHHHhhcceeEEcCchhhhHHHHHHH
Confidence 1 12222222221 12246789999999999999999999888776655443
No 176
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=3.7e-11 Score=125.45 Aligned_cols=167 Identities=16% Similarity=0.129 Sum_probs=120.0
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH-------------HH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV-------------EE 199 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~-------------~e 199 (690)
.++.|++|+++.+ +. +..+...+.++.++++++..|+.|++|||+..+. |+++... ..
T Consensus 8 ~~~~v~~itl~rp--~~---Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (257)
T PRK07658 8 VEDHVAVITLNHP--PA---NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQL 82 (257)
T ss_pred eeCCEEEEEECCC--CC---CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHH
Confidence 3678999999987 21 2223355788999999999999999999987642 4554321 12
Q ss_pred HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
..+.+..+...+|||||.++ .|..+|+.|+++||.+++.+++.++...+ ++|+-| ..+
T Consensus 83 ~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~g 141 (257)
T PRK07658 83 GQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPEL------------NLGLIP---------GFA 141 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCccc------------ccCCCC---------CCc
Confidence 23455566678999999999 56788999999999999999999999877 777755 111
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
..+ .+...| ......+ ++.|..++++||++.||||++...+++.+.+.+.+
T Consensus 142 ~~~----------------------~l~~~v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (257)
T PRK07658 142 GTQ----------------------RLPRYV------GKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLA 193 (257)
T ss_pred HHH----------------------HHHHHh------CHHHHHHHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHH
Confidence 111 011222 2222333 45789999999999999999998887776655543
No 177
>PRK08139 enoyl-CoA hydratase; Validated
Probab=99.27 E-value=5.2e-11 Score=125.08 Aligned_cols=166 Identities=15% Similarity=0.167 Sum_probs=117.6
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH---------H----HH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------E----EI 200 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~---------~----eI 200 (690)
++.|++|+++.+= ..|..+.-.+.++.+.++++..|+.|++|||...+. |+++... . .+
T Consensus 18 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 93 (266)
T PRK08139 18 RDGVATLTLNRPQ----AFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARC 93 (266)
T ss_pred eCCEEEEEeCCcc----cccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHH
Confidence 5678999998762 112223345788999999999999999999987652 4554321 1 12
Q ss_pred HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (690)
Q Consensus 201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e 279 (690)
.+.+..+...+|||||.++ .|..+|..|+++||.+++.+++.++...+ ++|+-+ ..+.
T Consensus 94 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~~~ 152 (266)
T PRK08139 94 SRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGV------------NIGLFC---------STPM 152 (266)
T ss_pred HHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCccc------------CcCCCC---------CccH
Confidence 2345556678999999999 56788999999999999999999999877 677744 0000
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
+ .+.+.| ......+ ++.|+.++++||++.||||++...+++.+.+.+.+
T Consensus 153 -~----------------------~l~r~v------G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 202 (266)
T PRK08139 153 -V----------------------ALSRNV------PRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLA 202 (266)
T ss_pred -H----------------------HHHHHh------CHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHH
Confidence 0 011222 2223333 46789999999999999999998888776655443
No 178
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=99.27 E-value=3.7e-11 Score=125.70 Aligned_cols=168 Identities=13% Similarity=0.130 Sum_probs=118.3
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH------------HH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV------------EE 199 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~------------~e 199 (690)
.++.|++|+++.+=. .|..+...+.++.++++++..|++|++|||+-.+ .|+++... ..
T Consensus 10 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (260)
T PRK05809 10 KEGHIAVVTINRPKA----LNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLL 85 (260)
T ss_pred EeCCEEEEEECCCcc----cCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHH
Confidence 356799999997621 1222334578899999999999999999998754 24444321 11
Q ss_pred HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
..+.+..+...+|||||.++ .|..+|+.|+++||.+++.+++.++...+ ++|+-| ..+
T Consensus 86 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~------------~~Gl~p---------~~g 144 (260)
T PRK05809 86 GNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEV------------GLGITP---------GFG 144 (260)
T ss_pred HHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCccc------------ccCCCC---------Ccc
Confidence 23345556677999999999 56788999999999999999999998877 677755 111
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
..+. +. |.+......+ ++.|..++++||++.||||++...+++.+...+.+
T Consensus 145 ~~~~----------------------l~------~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (260)
T PRK05809 145 GTQR----------------------LA------RIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALA 196 (260)
T ss_pred HHHH----------------------HH------HHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHH
Confidence 1110 11 1122222333 46789999999999999999998888776655443
No 179
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=99.27 E-value=3.9e-11 Score=125.46 Aligned_cols=166 Identities=14% Similarity=0.076 Sum_probs=119.5
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH------------HH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV------------EE 199 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~------------~e 199 (690)
.++.|++|+++.+ +. |..+...+.++.++++++..|+.|++|||+..+ .|+++... ..
T Consensus 9 ~~~~v~~itlnrp--~~---Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (258)
T PRK09076 9 IDGHVAILTLNNP--PA---NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARR 83 (258)
T ss_pred EECCEEEEEECCC--Cc---CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHH
Confidence 3578999999987 21 223335678899999999999999999999854 24555331 11
Q ss_pred HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
+.+.+..+....|||||.+++ |..+|..|+++||.+++.+.+.|+...+ ++|+-| ..+
T Consensus 84 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p---------~~g 142 (258)
T PRK09076 84 FGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEA------------SVGLLP---------CAG 142 (258)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCccc------------ccCCCC---------Ccc
Confidence 334556677789999999995 6688999999999999999999999888 778765 111
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
..++ +...| ......+ ++.|..++++||++.||||++...+++.+...+.
T Consensus 143 ~~~~----------------------l~~~i------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 193 (258)
T PRK09076 143 GTQN----------------------LPWLV------GEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAALAL 193 (258)
T ss_pred HHHH----------------------HHHHh------CHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHH
Confidence 1110 11222 2222233 4578999999999999999999888776655443
No 180
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.27 E-value=2.3e-11 Score=124.67 Aligned_cols=168 Identities=15% Similarity=0.149 Sum_probs=123.1
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH----------HHH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE----------IRR 202 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e----------I~~ 202 (690)
+++.|.+|.||.| ...+.....++.++.+++.+..+|+.+++|||.... .|.++..... .-+
T Consensus 43 ~d~~I~lItlNRP----~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~ 118 (290)
T KOG1680|consen 43 EDNGIALITLNRP----KALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLR 118 (290)
T ss_pred cCCCeEEEEeCCh----HHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccc
Confidence 5789999999988 233334456788999999999999999999998754 2445544433 111
Q ss_pred HHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcc
Q 005581 203 HVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQL 281 (690)
Q Consensus 203 aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~ 281 (690)
.......-.|||||.+++ |-.+|.-||++||.+||.|++.||.... ++||-| +.+-+-
T Consensus 119 ~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~------------~~Gi~p---------~~GGT~ 177 (290)
T KOG1680|consen 119 VWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEI------------RMGIIP---------SWGGTQ 177 (290)
T ss_pred hhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeeccccc------------ccCCcc---------CCCchh
Confidence 122222346999999995 5688999999999999999999999988 777766 444332
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 282 TRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 282 ~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
.+...|..+|.+ +-++.+..++++||++.|||++|...++++.+..+.
T Consensus 178 ----------------------rl~r~vG~s~Al-----e~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l 225 (290)
T KOG1680|consen 178 ----------------------RLPRIVGKSRAL-----EMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKL 225 (290)
T ss_pred ----------------------hHHHHhChHHHH-----HHHHhcCcccHHHHHhCCceeEeecchhHHHHHHHH
Confidence 233445554433 336778999999999999999999988876554443
No 181
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.27 E-value=4.4e-11 Score=119.00 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=120.1
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcC----CCCCCHHH--------------HHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIE----PLSCGWGK--------------VEE 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~----s~Gg~~~~--------------~~e 199 (690)
++.|++|.++.+-. .+..+...+.++.++++.+..|+.+++|||+.+ +.|+++.. ...
T Consensus 6 ~~~i~~i~l~~~~~----~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~ 81 (195)
T cd06558 6 DGGVATITLNRPEK----RNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRE 81 (195)
T ss_pred ECCEEEEEECCccc----cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHH
Confidence 45799999998731 122233567899999999999999999999986 33555432 234
Q ss_pred HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
+.+.+..+...+||||+.++ .+.++|+.++++||.++|.+++.++...+ ++|+-|. .+
T Consensus 82 ~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~------------~~G~~p~---------~g 140 (195)
T cd06558 82 LQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEV------------KLGLVPG---------GG 140 (195)
T ss_pred HHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhh------------hcCCCCC---------Cc
Confidence 55566666678999999999 57788999999999999999999999887 5666440 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
... .+.+.+ ......+ ++.|..++++||++.||||++...+++.+.+.+.+
T Consensus 141 ~~~----------------------~l~~~~------g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a 192 (195)
T cd06558 141 GTQ----------------------RLPRLV------GPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELA 192 (195)
T ss_pred HHH----------------------HHHHHh------CHHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHHHHHHHHH
Confidence 100 011111 1222223 45689999999999999999999888887776654
No 182
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=4.6e-11 Score=125.25 Aligned_cols=168 Identities=15% Similarity=0.164 Sum_probs=116.4
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH-------------H
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV-------------E 198 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~-------------~ 198 (690)
.++.|++|+++.+=. .+..+...+.++.+.|+++..|+.|++|||...+ .|+++... .
T Consensus 14 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 89 (262)
T PRK06144 14 VRGGIARITFNRPAA----RNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYER 89 (262)
T ss_pred eeCCEEEEEecCCcc----cCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHH
Confidence 356899999987621 1222234578899999999999999999998754 24554321 1
Q ss_pred HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhh-cCceeEEEeeccccc
Q 005581 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEK-VGIEPQVQRIGKYKS 276 (690)
Q Consensus 199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeK-lGI~~~~~~~G~yKs 276 (690)
.+.+.+..+...+|||||.++ .|..+|..|+++||.++|.+.+.++...+ + +|+-+.
T Consensus 90 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~~G~~p~--------- 148 (262)
T PRK06144 90 RIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIA------------RTLGNCLS--------- 148 (262)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhH------------HhccCCCC---------
Confidence 133445556678999999999 56788999999999999999999988754 3 566441
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~ 355 (690)
.+..+ .+...+ ......+ ++.|..++++||+++||||++...+++.+.+.+
T Consensus 149 ~g~~~----------------------~l~~~v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 200 (262)
T PRK06144 149 MSNLA----------------------RLVALL------GAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADA 200 (262)
T ss_pred ccHHH----------------------HHHHHh------CHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHH
Confidence 11110 112222 2233333 467899999999999999999988887765544
Q ss_pred Hh
Q 005581 356 RL 357 (690)
Q Consensus 356 ~~ 357 (690)
.+
T Consensus 201 ~a 202 (262)
T PRK06144 201 LA 202 (262)
T ss_pred HH
Confidence 43
No 183
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=4.6e-11 Score=125.07 Aligned_cols=167 Identities=15% Similarity=0.081 Sum_probs=119.5
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-----CCCHHHH------------HHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKV------------EEI 200 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-----Gg~~~~~------------~eI 200 (690)
++.|++|.++.+= ..|..+...+.++.++++++..|+.|++|||.-.+. |+++... ..+
T Consensus 11 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (260)
T PRK07657 11 TPHVVKITLNRPR----AANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLI 86 (260)
T ss_pred cCCEEEEEEeCCc----ccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHH
Confidence 5789999998862 112223345789999999999999999999988552 4444331 112
Q ss_pred HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (690)
Q Consensus 201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e 279 (690)
.+.+..+....|||||.++ .|..+|..|+++||.+++.+.+.++...+ ++|+-| ..+.
T Consensus 87 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~G~~p---------~~g~ 145 (260)
T PRK07657 87 RTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTET------------TLAIIP---------GAGG 145 (260)
T ss_pred HHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchh------------ccCcCC---------CccH
Confidence 3445556677999999999 56788999999999999999999999888 777765 1111
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
.+. +...+ ......+ ++.|..++++||++.||||++...+++.+.+.+.+
T Consensus 146 ~~~----------------------l~~~v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (260)
T PRK07657 146 TQR----------------------LPRLI------GVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIA 196 (260)
T ss_pred HHH----------------------HHHHh------CHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHH
Confidence 110 11111 1222223 46789999999999999999998888776665544
No 184
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=99.26 E-value=4.2e-11 Score=126.38 Aligned_cols=167 Identities=15% Similarity=0.103 Sum_probs=119.6
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH------------H---
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------E--- 198 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~------------~--- 198 (690)
++.|++|+++.+= ..|..+...+.++.++++.+..|++|++|||+-++. |+++... .
T Consensus 15 ~~~va~itlnrp~----~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 90 (275)
T PRK09120 15 EDGIAWVTLNRPE----KRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIR 90 (275)
T ss_pred ECCEEEEEecCcc----cccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHH
Confidence 5679999998862 112223345788999999999999999999987652 4444321 1
Q ss_pred -HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 199 -EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 199 -eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
.+.+.+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++...+ ++|+-| .
T Consensus 91 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p---------~ 149 (275)
T PRK09120 91 REAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEI------------NWGIPP---------G 149 (275)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCcc------------ccCCCC---------C
Confidence 112334556678999999999 57788999999999999999999999888 788865 1
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~ 355 (690)
.+..+. +. |.+......+ ++.|..++++||+++||||++...+++.+.+.+
T Consensus 150 ~g~~~~----------------------l~------~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~ 201 (275)
T PRK09120 150 GGVSKA----------------------MA------DTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRE 201 (275)
T ss_pred cchHHH----------------------HH------HHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHH
Confidence 111110 11 2222333334 467899999999999999999998888776655
Q ss_pred Hh
Q 005581 356 RL 357 (690)
Q Consensus 356 ~~ 357 (690)
.+
T Consensus 202 ~a 203 (275)
T PRK09120 202 LA 203 (275)
T ss_pred HH
Confidence 44
No 185
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.26 E-value=4.5e-11 Score=124.35 Aligned_cols=167 Identities=15% Similarity=0.086 Sum_probs=118.4
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH-------H--HHHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE-------I--RRHV 204 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e-------I--~~aI 204 (690)
++.|++|.++.+= ..+..+...+.++.+.++++..|+.|++|||+-++ .|+++....+ . .+.+
T Consensus 12 ~~~v~~i~ln~p~----~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (249)
T PRK07110 12 EEGIAQVTMQDRV----NKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLY 87 (249)
T ss_pred eCCEEEEEecCCC----ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHH
Confidence 5679999998752 11222334578999999999999999999998764 3455443211 1 2345
Q ss_pred HHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccC
Q 005581 205 VDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (690)
Q Consensus 205 ~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~ 283 (690)
..+...+|||||.++ .|..+|+.|+++||.+++.+.+.++...+ ++|+-| ..+..+.
T Consensus 88 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p---------~~g~~~~- 145 (249)
T PRK07110 88 SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFM------------KYGFTP---------GMGATAI- 145 (249)
T ss_pred HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchh------------ccCCCC---------CchHHHH-
Confidence 556678999999999 57788999999999999999999988766 677755 1111110
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 284 ~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
+. |.+......+ ++.|..++++||++.||||++...+++.+.+.+.+
T Consensus 146 ---------------------l~------~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (249)
T PRK07110 146 ---------------------LP------EKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELA 193 (249)
T ss_pred ---------------------HH------HHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHH
Confidence 11 1222333334 45789999999999999999998888776665544
No 186
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=99.26 E-value=6e-11 Score=124.75 Aligned_cols=167 Identities=15% Similarity=0.111 Sum_probs=117.1
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH--------------H
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE--------------E 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~--------------e 199 (690)
++.|++|.++.+= ..+..+...+.++.+.|+++..|+.|++|||...+ .|+++.... .
T Consensus 19 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 94 (268)
T PRK07327 19 PPGVLEIVLNGPG----ALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWRE 94 (268)
T ss_pred CCCEEEEEEcCCC----ccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHH
Confidence 4679999999872 11222334577899999999999999999998754 244443211 1
Q ss_pred HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
+.+.+..+...+|||||.++ .|..+|..|+++||.+++.+++.++...+ ++|+.| ..+
T Consensus 95 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~g 153 (268)
T PRK07327 95 ARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHT------------RLGVAA---------GDH 153 (268)
T ss_pred HHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCccc------------ccCCCC---------Ccc
Confidence 22344555667899999999 56688999999999999999999998877 777765 111
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
..+. +...| ......+ ++.|..++++||++.||||++...+++.+...+.+
T Consensus 154 ~~~~----------------------l~~~v------G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 205 (268)
T PRK07327 154 AAIV----------------------WPLLC------GMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVA 205 (268)
T ss_pred hhhH----------------------HHHHh------CHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHH
Confidence 1111 11111 1222222 45789999999999999999998888776655443
No 187
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=99.26 E-value=1e-11 Score=123.38 Aligned_cols=167 Identities=17% Similarity=0.173 Sum_probs=116.7
Q ss_pred CCCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccC-------------------CCcch
Q 005581 385 GGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-------------------PGGDA 445 (690)
Q Consensus 385 ~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinS-------------------pGG~~ 445 (690)
..++.|.-|.++.|--- +..+..+..++.+.+..+.+||++|+|||.+.. +-|+.
T Consensus 27 ~~~~~V~hv~lnRPsk~------Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd 100 (292)
T KOG1681|consen 27 SAQPFVYHVQLNRPSKL------NALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDD 100 (292)
T ss_pred CCCCeEEEEEecCcchh------hhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccch
Confidence 34678888888887652 445567889999999999999999999996531 22222
Q ss_pred hh--hhHHHHHHHHh--------cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceec----cccccccccchHHHHH
Q 005581 446 LA--SDLMWREIRLL--------SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTG----SIGVVTGKFNLGKLYE 511 (690)
Q Consensus 446 ~a--s~~i~~~I~~l--------~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~G----SIGv~~~~~~~~~l~~ 511 (690)
.+ +..+.+.|..+ +.+||||++|+|.|.|||.-|..+||++||+..+++- -+|+......+.++.+
T Consensus 101 ~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~Rlpk 180 (292)
T KOG1681|consen 101 VARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPK 180 (292)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhH
Confidence 21 34445555443 2399999999999999999999999999999999875 2444444444433322
Q ss_pred HcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH-HHHhcCCcccHHHHHHcCCc
Q 005581 512 KIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKM-EEYAQGRVWTGNDAASRGLV 590 (690)
Q Consensus 512 klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v-~~l~~Grv~tg~eA~e~GLV 590 (690)
-.|= ..-+ +.-+++|.|+|.||++.|||
T Consensus 181 vVGn---------------------------------------------------~s~~~elafTar~f~a~EAl~~GLv 209 (292)
T KOG1681|consen 181 VVGN---------------------------------------------------QSLARELAFTARKFSADEALDSGLV 209 (292)
T ss_pred Hhcc---------------------------------------------------hHHHHHHHhhhhhcchhhhhhcCcc
Confidence 2221 0112 33467999999999999999
Q ss_pred ccccC-hHHHHHHHHHHcC
Q 005581 591 DALGG-FSRAVAIAKQKAN 608 (690)
Q Consensus 591 D~ig~-~~~ai~~a~~~a~ 608 (690)
.++.+ .++.++.+..+|.
T Consensus 210 Srvf~dk~~ll~~~l~mA~ 228 (292)
T KOG1681|consen 210 SRVFPDKEELLNGALPMAE 228 (292)
T ss_pred hhhcCCHHHHHhhhHHHHH
Confidence 99965 4555555544443
No 188
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=5.3e-11 Score=124.26 Aligned_cols=165 Identities=16% Similarity=0.145 Sum_probs=117.2
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH------------HHHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV------------EEIR 201 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~------------~eI~ 201 (690)
++.|++|+++.+= ..|..+...+.++.++++++. ++|++|||+.++. |+++... ..+.
T Consensus 9 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 82 (255)
T PRK08150 9 DGGVATIGLNRPA----KRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWH 82 (255)
T ss_pred eCCEEEEEEcCCc----cccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHH
Confidence 5679999999872 112223345788999998885 7899999987652 4555332 2234
Q ss_pred HHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCc
Q 005581 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (690)
Q Consensus 202 ~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep 280 (690)
+.+..+...+|||||.++ .|..+|+.|+++||.+++.+.+.++...+ ++|+-| ..+.+
T Consensus 83 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p---------~~g~~ 141 (255)
T PRK08150 83 RVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEG------------QRGIFV---------GGGGS 141 (255)
T ss_pred HHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEecccc------------ccCCCC---------CccHH
Confidence 455667678999999999 46788999999999999999999999888 778765 11111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 281 ~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
+. +...| ......+ ++.|..++++||+++||||++...+++.+...+.+
T Consensus 142 ~~----------------------l~~~i------G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 191 (255)
T PRK08150 142 VR----------------------VPRLI------GVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELA 191 (255)
T ss_pred HH----------------------HHHHh------CHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHH
Confidence 10 11122 2222233 56789999999999999999998888777655543
No 189
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=6.1e-11 Score=125.27 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=116.9
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH------------H---
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------E--- 198 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~------------~--- 198 (690)
++.|++|.++.+= ..+..+...+.++.++++++..|+.|++|||+..+ .|+++... .
T Consensus 24 ~~~v~~itlnrp~----~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 99 (277)
T PRK08258 24 DDGVATITLNRPE----RKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFT 99 (277)
T ss_pred ECCEEEEEeCCcc----cccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHH
Confidence 5689999999761 11222234578899999999999999999998764 24554332 0
Q ss_pred -HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 199 -EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 199 -eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
...+.+..+...+|||||.++ .|..+|+.|+++||.++|.+.+.++...+ ++|+-+- .
T Consensus 100 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~~Gl~p~--------~ 159 (277)
T PRK08258 100 RMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFT------------RVGLAGA--------D 159 (277)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEecccc------------ccCcCCC--------C
Confidence 112345556678999999999 56788999999999999999999998866 6676420 0
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~ 355 (690)
.+..+ .+...| ......+ ++.|..++++||+++||||++...+++.+.+.+
T Consensus 160 ~g~~~----------------------~l~~~v------G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 211 (277)
T PRK08258 160 MGACA----------------------LLPRII------GQGRASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQA 211 (277)
T ss_pred chHHH----------------------HHHHHh------CHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHH
Confidence 01111 011111 2222333 467889999999999999999988887766655
Q ss_pred Hh
Q 005581 356 RL 357 (690)
Q Consensus 356 ~~ 357 (690)
.+
T Consensus 212 ~a 213 (277)
T PRK08258 212 LA 213 (277)
T ss_pred HH
Confidence 44
No 190
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=99.25 E-value=7.3e-11 Score=124.61 Aligned_cols=168 Identities=13% Similarity=0.137 Sum_probs=117.8
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH----------------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV---------------- 197 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~---------------- 197 (690)
++.|++|+++.+ ...|..+...+.++.++++++..||.|++|||..++ .|+++...
T Consensus 17 ~~~v~~itlnrp----~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 92 (276)
T PRK05864 17 RPEIALITLNRP----ERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYAL 92 (276)
T ss_pred cCCEEEEEecCC----ccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHH
Confidence 567999999876 111222334567899999999999999999998764 24544321
Q ss_pred ---HHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecc
Q 005581 198 ---EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (690)
Q Consensus 198 ---~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~ 273 (690)
..+.+.+..+...+|||||.++ .|..+|+.|+++||.+++.+.+.++...+ ++|+.+-
T Consensus 93 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~~Gl~p~------ 154 (276)
T PRK05864 93 RSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGI------------NNGLTAS------ 154 (276)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCccc------------ccCCCCC------
Confidence 1123345556678999999999 57789999999999999999999998877 6676530
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHH
Q 005581 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISM 352 (690)
Q Consensus 274 yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~ 352 (690)
..+..+. +. |.+......+ ++.|+.++++||++.||||++...+++.+.
T Consensus 155 --~~g~~~~----------------------l~------~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~ 204 (276)
T PRK05864 155 --ELGLSYL----------------------LP------RAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDT 204 (276)
T ss_pred --Ccchhee----------------------hH------hhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHH
Confidence 0111111 11 1222333333 467899999999999999999988887765
Q ss_pred HHHHh
Q 005581 353 LKERL 357 (690)
Q Consensus 353 l~~~~ 357 (690)
+.+.+
T Consensus 205 a~~~a 209 (276)
T PRK05864 205 CYAIA 209 (276)
T ss_pred HHHHH
Confidence 55443
No 191
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=99.24 E-value=8e-11 Score=124.16 Aligned_cols=168 Identities=13% Similarity=0.058 Sum_probs=116.8
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH-----------H--
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV-----------E-- 198 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~-----------~-- 198 (690)
.++.|++|+++.+= ..|..+...+.++.++++.+..|+.|++|||...+ .|+++... .
T Consensus 19 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 94 (273)
T PRK07396 19 SADGIAKITINRPE----VRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRL 94 (273)
T ss_pred ecCCEEEEEEcCCc----ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhh
Confidence 35689999998762 12222334578899999999999999999998754 24544321 1
Q ss_pred HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (690)
Q Consensus 199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa 277 (690)
...+.+..+...+|||||.++ .|..+|+-|+++||.+++.+.+.++...+ ++|+-| ..
T Consensus 95 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~ 153 (273)
T PRK07396 95 NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGP------------KVGSFD---------GG 153 (273)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccc------------cccccC---------Cc
Confidence 112234456677999999999 46788999999999999999999998877 666544 10
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
+..+ .+...|. .....+ ++.|..++++||+++||||++...+++.+.+.+.
T Consensus 154 ~~~~----------------------~l~~~vG------~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~ 205 (273)
T PRK07396 154 YGAS----------------------YLARIVG------QKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRW 205 (273)
T ss_pred hHHH----------------------HHHHHhh------HHHHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHH
Confidence 0000 0222222 222233 4678999999999999999999888877665554
Q ss_pred h
Q 005581 357 L 357 (690)
Q Consensus 357 ~ 357 (690)
+
T Consensus 206 a 206 (273)
T PRK07396 206 C 206 (273)
T ss_pred H
Confidence 3
No 192
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=8.7e-11 Score=122.61 Aligned_cols=167 Identities=16% Similarity=0.124 Sum_probs=118.3
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH---------------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE--------------- 198 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~--------------- 198 (690)
++.|++|.++.+= ..+..+...+.++.++|+++..|+.+++|||.-.+ .|+++....
T Consensus 9 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07260 9 EDDLATLTLNRPE----VSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIA 84 (255)
T ss_pred ECCEEEEEeCCcc----cccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHH
Confidence 5679999999762 11222334577999999999999999999998764 245543221
Q ss_pred -HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 199 -EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 199 -eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
.+.+.+..++..+|||||.++ .|..+|..|+++||.+++.+.+.++...+ ++|+-| .
T Consensus 85 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~------------~~Gl~p---------~ 143 (255)
T PRK07260 85 ELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFV------------GVGLAP---------D 143 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHh------------hcCCCC---------C
Confidence 123344456678999999999 46688999999999999999999998877 788866 2
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~ 355 (690)
.+..+. +... +......+ ++.|..++++||++.||||++...+++.+.+.+
T Consensus 144 ~g~~~~----------------------l~~~------vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~ 195 (255)
T PRK07260 144 AGGLFL----------------------LTRA------IGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQ 195 (255)
T ss_pred Cchhhh----------------------hHHh------hCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHH
Confidence 222211 1111 22222333 456899999999999999999988877766554
Q ss_pred Hh
Q 005581 356 RL 357 (690)
Q Consensus 356 ~~ 357 (690)
.+
T Consensus 196 ~a 197 (255)
T PRK07260 196 LL 197 (255)
T ss_pred HH
Confidence 43
No 193
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=99.24 E-value=7.7e-11 Score=123.46 Aligned_cols=166 Identities=17% Similarity=0.103 Sum_probs=116.1
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH------------HH--
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------EE-- 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~------------~e-- 199 (690)
++.|++|+++.+= ..|..+...+.++.+.++++. |+.+++|||+..+ .|+++... ..
T Consensus 11 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK08140 11 EAGVATLTLNRPD----KLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIE 85 (262)
T ss_pred ECCEEEEEecCCc----ccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHH
Confidence 5679999998751 122233345789999999999 9999999998764 24444321 11
Q ss_pred --HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 200 --IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 200 --I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
+...+..+...+|||||.+++ |..+|+.|+++||.+++.+++.++...+ ++|+-| .
T Consensus 86 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~G~~p---------~ 144 (262)
T PRK08140 86 TFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFV------------KIGLVP---------D 144 (262)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEecccc------------ccCCCC---------C
Confidence 122445566789999999995 6688999999999999999999988766 677755 1
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~ 355 (690)
.+..+. +...| ......+ ++.|..++++||+++||||++...+++.+.+.+
T Consensus 145 ~g~~~~----------------------l~~~v------G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 196 (262)
T PRK08140 145 SGGTWF----------------------LPRLV------GMARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQ 196 (262)
T ss_pred ccHHHH----------------------HHHHh------CHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHH
Confidence 111110 11122 2222233 467899999999999999999988887766555
Q ss_pred Hh
Q 005581 356 RL 357 (690)
Q Consensus 356 ~~ 357 (690)
.+
T Consensus 197 ~a 198 (262)
T PRK08140 197 LA 198 (262)
T ss_pred HH
Confidence 44
No 194
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=6.2e-11 Score=123.31 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=116.6
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH------------HHH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------EEI 200 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~------------~eI 200 (690)
.++.|++|.++.+= ..+..+...+.++.++++++..||.|++|||+..+ .|+++... ..+
T Consensus 9 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK05870 9 VDDGVALITVNDPD----RRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRI 84 (249)
T ss_pred ccCCEEEEEEcCCC----ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHH
Confidence 35679999998751 11222334578999999999999999999998754 24554332 123
Q ss_pred HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (690)
Q Consensus 201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e 279 (690)
.+.+..+...+|||||.++ .|..+|..|+++||.+++.+.+.++...+ ++|+-| ..+.
T Consensus 85 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~G~~p---------~~g~ 143 (249)
T PRK05870 85 YDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQ------------KLGLHP---------GGGA 143 (249)
T ss_pred HHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCccc------------ccCcCC---------CCcc
Confidence 3345556678999999999 56788999999999999999999988877 777766 2222
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
+++ + .|-+......+ ++.|+.++++||++.||||++. +++.+...+.
T Consensus 144 ~~~----------------------l------~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~ 191 (249)
T PRK05870 144 TWM----------------------L------QRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALEL 191 (249)
T ss_pred eee----------------------H------HhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHH
Confidence 221 1 12223333333 4578999999999999999998 5665554443
No 195
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=7.2e-11 Score=123.54 Aligned_cols=167 Identities=19% Similarity=0.119 Sum_probs=117.1
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-----CCCHHHHH----------HHH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE----------EIR 201 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-----Gg~~~~~~----------eI~ 201 (690)
.++.|++|.++.+=. .|..+...+.++.++++++..|+.|++|||+..++ |+++.... .+.
T Consensus 10 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (259)
T PRK06494 10 RKGHVTIVTLNRPEV----MNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFG 85 (259)
T ss_pred eECCEEEEEEcCccc----cCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHH
Confidence 356899999987622 12222345688999999999999999999988652 55554321 111
Q ss_pred HHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCc
Q 005581 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (690)
Q Consensus 202 ~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep 280 (690)
. +..+....|||||.++ .|..+|+.|+++||.+++.+.+.++...+ ++|+-| ..+..
T Consensus 86 ~-~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~g~~ 143 (259)
T PRK06494 86 G-LTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEP------------RVGLAA---------LAGGL 143 (259)
T ss_pred H-HHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCccc------------ccCCCC---------CchHH
Confidence 1 2223356899999999 46788999999999999999999999877 777765 11111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 281 ~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
+. +. |.+......+ ++.|..++++||+++||||++...+++.+.+.+.+
T Consensus 144 ~~----------------------l~------~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a 193 (259)
T PRK06494 144 HR----------------------LP------RQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWA 193 (259)
T ss_pred HH----------------------HH------HHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHH
Confidence 10 11 2223333333 56789999999999999999998888776655443
No 196
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=99.23 E-value=1.1e-10 Score=122.67 Aligned_cols=168 Identities=14% Similarity=0.062 Sum_probs=117.2
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCC-ceEEEEEcCC----CCCCHHHH--------------
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPR-IVGIYLHIEP----LSCGWGKV-------------- 197 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~-IkgVvL~i~s----~Gg~~~~~-------------- 197 (690)
.++.|++|+++.+= ..+..+...+.+|.+.++.+..|+. |++|||+..+ .|+++...
T Consensus 10 ~~~~i~~itlnrp~----~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (266)
T PRK05981 10 FDGGVAILTLDHPE----VMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAG 85 (266)
T ss_pred eECCEEEEEecCcc----cccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhH
Confidence 35679999998762 1122233457899999999988765 9999998764 24444321
Q ss_pred HH----HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeec
Q 005581 198 EE----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIG 272 (690)
Q Consensus 198 ~e----I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G 272 (690)
+. +.+.+..+...+|||||.++ .|..+|..|+++||.++|.+++.++...+ ++|+-|
T Consensus 86 ~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~------------~lG~~p------ 147 (266)
T PRK05981 86 AALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFR------------RIGLVP------ 147 (266)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHh------------hcCCCC------
Confidence 11 23445566678999999999 46688999999999999999999987766 777765
Q ss_pred cccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHH
Q 005581 273 KYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVIS 351 (690)
Q Consensus 273 ~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~ 351 (690)
..+..+. +...| ......+ ++.|..++++||++.||||++...+++.+
T Consensus 148 ---~~g~~~~----------------------l~~~v------g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~ 196 (266)
T PRK05981 148 ---DGGSTWL----------------------LPRLV------GKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMA 196 (266)
T ss_pred ---CccHHHH----------------------HHHHh------HHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHH
Confidence 1111111 11112 2222233 46789999999999999999998888776
Q ss_pred HHHHHh
Q 005581 352 MLKERL 357 (690)
Q Consensus 352 ~l~~~~ 357 (690)
.+.+.+
T Consensus 197 ~a~~~a 202 (266)
T PRK05981 197 EAMKLA 202 (266)
T ss_pred HHHHHH
Confidence 665544
No 197
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=99.22 E-value=9.1e-11 Score=122.88 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=119.2
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHHH-------H----H
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKVE-------E----I 200 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~~-------e----I 200 (690)
.++.|++|+++.+ .. |..+...+.++.++++++..|++|++|||+-.. .|+++.... . .
T Consensus 9 ~~~~v~~itlnrp-~~----Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (261)
T PRK03580 9 RNGSILEITLDRP-KA----NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGG 83 (261)
T ss_pred EECCEEEEEECCc-cc----cCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhh
Confidence 3568999999988 21 222334578899999999999999999998754 245554211 1 1
Q ss_pred HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCC
Q 005581 201 RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGD 279 (690)
Q Consensus 201 ~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~e 279 (690)
...+.++....|||||.++ .|..+|.-|+++||.+++.+.+.++...+ ++|+-| ..+.
T Consensus 84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~G~~p---------~~g~ 142 (261)
T PRK03580 84 FAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEA------------KLGIVP---------DSGG 142 (261)
T ss_pred hHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCccc------------ccCcCC---------CccH
Confidence 2234556678999999999 56788999999999999999999999877 777755 1111
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 280 QLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 280 p~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
.+ .+...+ ......+ ++.|..++++||+++||||++...+++.+.+.+.+
T Consensus 143 ~~----------------------~l~~~v------g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (261)
T PRK03580 143 VL----------------------RLPKRL------PPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELA 193 (261)
T ss_pred HH----------------------HHHHHh------CHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHH
Confidence 11 011222 2223333 45689999999999999999998888776665544
No 198
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=99.22 E-value=9.2e-11 Score=122.59 Aligned_cols=164 Identities=16% Similarity=0.124 Sum_probs=118.5
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH--------------
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE-------------- 198 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~-------------- 198 (690)
.++.|++|+++.+ +. |..+...+.++.++++++..|+.|++|||+-++ .|+++....
T Consensus 10 ~~~~v~~itlnrp--~~---Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK06495 10 VSDHVAVVTLDNP--PV---NALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNR 84 (257)
T ss_pred eeCCEEEEEECCC--cc---ccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHH
Confidence 3568999999997 21 223345678999999999999999999998764 345554321
Q ss_pred HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (690)
Q Consensus 199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa 277 (690)
.+.+.+..+....|||||.++ .|..+|+.|+++||.+++.+.+.++...+ ++|+. |
T Consensus 85 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~------~----- 141 (257)
T PRK06495 85 RTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEI------------DVGLA------G----- 141 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhh------------ccCcc------c-----
Confidence 123345556677899999999 56788999999999999999999999877 67762 1
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
..+. +... +......+ ++.|..++++||++.||||++...+++.+...+.
T Consensus 142 -~~~~----------------------l~~~------~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~ 192 (257)
T PRK06495 142 -GGKH----------------------AMRL------FGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEI 192 (257)
T ss_pred -cHHH----------------------HHHH------hCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHH
Confidence 1110 1111 22233333 4578999999999999999999888877665554
Q ss_pred h
Q 005581 357 L 357 (690)
Q Consensus 357 ~ 357 (690)
+
T Consensus 193 a 193 (257)
T PRK06495 193 A 193 (257)
T ss_pred H
Confidence 3
No 199
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=7.5e-11 Score=123.65 Aligned_cols=166 Identities=15% Similarity=0.099 Sum_probs=116.6
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH------H-------H
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE------E-------I 200 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~------e-------I 200 (690)
++.|++|+++.+= ..+..+...+.++.++++++..|+.|++|||+..+ .|+++.... . .
T Consensus 12 ~~~v~~itlnrp~----~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07799 12 RGHTLIVTMNRPE----ARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDP 87 (263)
T ss_pred ECCEEEEEECCCc----ccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhh
Confidence 5679999998762 12223345678999999999999999999998764 255554321 0 0
Q ss_pred H--HHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581 201 R--RHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (690)
Q Consensus 201 ~--~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa 277 (690)
. ..+.+++...|||||.+++ |..+|.-|+++||.+++.+.+.++...+ ++|+-| ..
T Consensus 88 ~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~ 146 (263)
T PRK07799 88 SRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEA------------KWSLFP---------MG 146 (263)
T ss_pred hHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCccc------------ccCcCC---------Cc
Confidence 0 1233345678999999995 6688999999999999999999999877 777765 11
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
+..+ .+... +......+ ++.|..++++||+++||||++...+++.+...+.
T Consensus 147 g~~~----------------------~l~r~------vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 198 (263)
T PRK07799 147 GSAV----------------------RLVRQ------IPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALEL 198 (263)
T ss_pred cHHH----------------------HHHHH------hCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHH
Confidence 1111 01122 22233333 5678999999999999999999888776655443
No 200
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=99.21 E-value=9.2e-11 Score=121.65 Aligned_cols=167 Identities=16% Similarity=0.116 Sum_probs=115.6
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHH-------HHHHHHHHHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK-------VEEIRRHVVD 206 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~-------~~eI~~aI~~ 206 (690)
++.|++|+++.+=. .+..+...+.++.++++++.+| .+++|||+..+. |+++.. ...+.+.+..
T Consensus 7 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 81 (243)
T PRK07854 7 DGQVLTIELQRPER----RNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHA 81 (243)
T ss_pred eCCEEEEEeCCCcc----ccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHH
Confidence 56799999998722 1222334567899999998754 899999986542 444431 1223445556
Q ss_pred HhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCC
Q 005581 207 FKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKT 285 (690)
Q Consensus 207 ~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~ 285 (690)
+...+|||||.++ .|..+|..|+++||.++|.+++.++...+ ++|+.| ..+..+
T Consensus 82 l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~G~~p---------~~g~~~---- 136 (243)
T PRK07854 82 IDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVA------------KYGIAL---------DNWTIR---- 136 (243)
T ss_pred HHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEecccc------------ccccCC---------CccHHH----
Confidence 6677999999999 56788999999999999999999999877 777765 111111
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhC
Q 005581 286 MSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG 358 (690)
Q Consensus 286 ~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g 358 (690)
.+...+ ......+ ++.|..++++||++.||||++...+++.+.+++...
T Consensus 137 ------------------~l~~~~------G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~a~~~a~~l~~ 186 (243)
T PRK07854 137 ------------------RLSSLV------GGGRARAMLLGAEKLTAEQALATGMANRIGTLADAQAWAAEIAG 186 (243)
T ss_pred ------------------HHHHHh------CHHHHHHHHHcCCCcCHHHHHHCCCcccccCHHHHHHHHHHHHh
Confidence 011112 2222333 467899999999999999999776666666555443
No 201
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=1.1e-10 Score=121.90 Aligned_cols=167 Identities=18% Similarity=0.183 Sum_probs=116.6
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH-----H-HHHHHH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE-----I-RRHVVD 206 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e-----I-~~aI~~ 206 (690)
.++.|++|+++.+=. .|..+...+.++.+.++++..|+.|++|||.-.+ .|+++..... . ...+..
T Consensus 9 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08252 9 RRGRVLIITINRPEA----RNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGG 84 (254)
T ss_pred EECCEEEEEECCCcc----cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHH
Confidence 356899999987621 1222334578899999999999999999998754 3555543211 1 111212
Q ss_pred H--hhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccC
Q 005581 207 F--KKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (690)
Q Consensus 207 ~--r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~ 283 (690)
+ +...|||||.++ .|..+|..|+++||.+++.+.+.++...+ ++|+.| ..+..+.
T Consensus 85 ~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p---------~~g~~~~- 142 (254)
T PRK08252 85 LTERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEV------------KRGLVA---------AGGGLLR- 142 (254)
T ss_pred HHHhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchh------------hcCCCC---------CchHHHH-
Confidence 2 246899999999 56788999999999999999999999887 788866 1111110
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 284 ~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
+. |.+......+ ++.|..++++||+++||||++...+++++.+.+.
T Consensus 143 ---------------------l~------~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 189 (254)
T PRK08252 143 ---------------------LP------RRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDAALEL 189 (254)
T ss_pred ---------------------HH------HHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHH
Confidence 11 2223333344 4568899999999999999999888877665543
No 202
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.20 E-value=5.8e-10 Score=114.87 Aligned_cols=167 Identities=20% Similarity=0.205 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCce
Q 005581 414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTL 493 (690)
Q Consensus 414 ~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~ 493 (690)
.++.+.++|+.+.++ ++|.|-+++|||.+.++..|.+.|+.. +.||+++|...|.|||.+||++||.|+|.|++.
T Consensus 76 dse~v~raI~~~~~~---~~IdLii~TpGG~v~AA~~I~~~l~~~--~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~ 150 (285)
T PF01972_consen 76 DSEFVLRAIREAPKD---KPIDLIIHTPGGLVDAAEQIARALREH--PAKVTVIVPHYAMSAGTLIALAADEIVMGPGAV 150 (285)
T ss_pred hHHHHHHHHHhcCCC---CceEEEEECCCCcHHHHHHHHHHHHhC--CCCEEEEECcccccHHHHHHHhCCeEEECCCCc
Confidence 356677777666544 568888999999999999999999976 889999999999999999999999999999999
Q ss_pred eccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhH--HHH-HHHHHHHHHHHHHHHHHhhcCCCHHHH
Q 005581 494 TGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDE--AEL-FAKSAQNAYKLFRDKAAFSRSMTVDKM 570 (690)
Q Consensus 494 ~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~--~~~-~~~~i~~~y~~F~~~Va~~R~~~~~~v 570 (690)
.|.+-...+.......++.+-- .+....+++. ... -++.++++. .|+...-. .+++.++.
T Consensus 151 LGpiDPqi~~~pA~sil~~~~~---------------K~~~~i~D~tlIladia~KAi~q~~-~~v~~lL~-~~~~~eka 213 (285)
T PF01972_consen 151 LGPIDPQIGQYPAASILKAVEQ---------------KPPDEIDDQTLILADIAEKAIRQVR-EFVKELLK-DKMDEEKA 213 (285)
T ss_pred cCCCCccccCCChHHHHHHHHh---------------ccccccCHHHHHHHHHHHHHHHHHH-HHHHHHHH-cCCCHHHH
Confidence 9975432222222222111100 0001111111 001 112223332 34433333 35777766
Q ss_pred HHHh----cC-----CcccHHHHHHcCCcccccChHHHHHH
Q 005581 571 EEYA----QG-----RVWTGNDAASRGLVDALGGFSRAVAI 602 (690)
Q Consensus 571 ~~l~----~G-----rv~tg~eA~e~GLVD~ig~~~~ai~~ 602 (690)
++++ +| ..++.+||+++||==...-.++..+.
T Consensus 214 ~~ia~~L~~g~~tHdypi~~eea~~lGL~V~t~~p~ei~~l 254 (285)
T PF01972_consen 214 EEIAEKLSSGKWTHDYPITVEEAKELGLPVSTDMPEEIYEL 254 (285)
T ss_pred HHHHHHhcCCCCCCCCCCCHHHHHHcCCCcCCCCcHHHHHH
Confidence 6543 34 45889999999997666555554443
No 203
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=99.20 E-value=4e-10 Score=117.34 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=118.8
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH------H-------
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE------E------- 199 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~------e------- 199 (690)
.++.|++|+++.+ +. |..+.-.+.++.+.++++..|+.|++|||.-.+ .|+++.... .
T Consensus 8 ~~~~v~~itlnrp--~~---Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (249)
T PRK07938 8 PEPGIAEVTVDYP--PV---NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG 82 (249)
T ss_pred cCCCEEEEEECCC--Cc---ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 4678999999987 21 223345578999999999999999999998764 356654321 1
Q ss_pred HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
..+.+..+...+|||||.++ .|..+|..|+++||.+++.+++.++...+ ++|+-.
T Consensus 83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~------------~~G~~g------------ 138 (249)
T PRK07938 83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEV------------DRGALG------------ 138 (249)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccc------------eecCch------------
Confidence 12344556678999999999 46788999999999999999999998877 566511
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
... .+. |-+......+ ++.|..++++||+++||||++...+++.+.+.+.+
T Consensus 139 ~~~----------------------~l~------~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 190 (249)
T PRK07938 139 AAT----------------------HLQ------RLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVA 190 (249)
T ss_pred hHH----------------------HHH------HhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHH
Confidence 000 011 1122233333 46789999999999999999999888877665544
No 204
>PLN02921 naphthoate synthase
Probab=99.19 E-value=1.6e-10 Score=124.68 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=117.7
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHHH-----------H--
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKVE-----------E-- 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~~-----------e-- 199 (690)
++.|++|+|+.+= ..+..+...+.+|.++++.+..|+.|++|||.-.+ .|+++.... .
T Consensus 74 ~~~Va~ItLnrP~----~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~ 149 (327)
T PLN02921 74 GEGIAKITINRPE----RRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLN 149 (327)
T ss_pred CCCEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHH
Confidence 5789999998761 12223345678999999999999999999998754 255553211 1
Q ss_pred HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
..+.+..++..+|||||.+++ |..+|..|+++||.++|.+.+.|+..++ ++|+-+. .+
T Consensus 150 ~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~------------~~Gl~p~---------~g 208 (327)
T PLN02921 150 VLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGP------------KVGSFDA---------GY 208 (327)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCccc------------ccCCCCC---------cc
Confidence 122344566779999999995 6688999999999999999999999877 5665431 00
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
.++ .+. |-+......+ ++.|+.++++||+++||||++...+++.+.+.+.+
T Consensus 209 g~~----------------------~L~------rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a 260 (327)
T PLN02921 209 GSS----------------------IMA------RLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWC 260 (327)
T ss_pred HHH----------------------HHH------HHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHH
Confidence 000 011 1122333334 46789999999999999999999888876655443
No 205
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=1.3e-10 Score=121.69 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=116.3
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH---------H----H
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------E----E 199 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~---------~----e 199 (690)
.++.|++|+++.+= ..+..+...+.++.+.++++ .|+.+++|||...+. |+++... . .
T Consensus 12 ~~~~v~~itlnrp~----~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (260)
T PRK07659 12 YEGRVATIMLNRPE----ALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNT 86 (260)
T ss_pred eeCCEEEEEeCCcc----cccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHH
Confidence 35679999988762 11222334578999999999 689999999987652 4554332 1 1
Q ss_pred HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
+.+.+..+...+|||||.++ .|..+|+-|+++||.+++.+++.++...+ ++|+-| ..+
T Consensus 87 ~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~~g 145 (260)
T PRK07659 87 ISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFI------------GIGLIP---------DGG 145 (260)
T ss_pred HHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchh------------hcCCCC---------CCc
Confidence 23344456667999999999 57788999999999999999999998876 777765 222
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
..+. + .|.+......+ ++.|..++++||+++||||++. .+++.+.+.+.+
T Consensus 146 ~~~~----------------------L------~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a 196 (260)
T PRK07659 146 GHFF----------------------L------QKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKI 196 (260)
T ss_pred hhhh----------------------H------HHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHH
Confidence 2221 1 12233344444 4568999999999999999998 677665554433
No 206
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=99.19 E-value=1.7e-10 Score=122.66 Aligned_cols=166 Identities=19% Similarity=0.203 Sum_probs=115.4
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH---------------
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV--------------- 197 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~--------------- 197 (690)
.++.|++|+++.+=. .+..+...+.++.+.++++..|++|++|||+..+. |+++...
T Consensus 10 ~~~~Va~ItlnrP~~----~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 85 (288)
T PRK08290 10 VAGRIARITLNRPEA----RNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPT 85 (288)
T ss_pred eeCCEEEEEecCccc----cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccc
Confidence 356799999987621 12223345788999999999999999999987642 4443211
Q ss_pred -------------------HHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhh
Q 005581 198 -------------------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGG 257 (690)
Q Consensus 198 -------------------~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~ 257 (690)
..+.+.+..++..+|||||.++ .|..+|..|+++||.+++.+.+.++...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~--------- 156 (288)
T PRK08290 86 LWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVV--------- 156 (288)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccc---------
Confidence 1122333456678999999999 57788999999999999999999998877
Q ss_pred hhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHh
Q 005581 258 VLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKE 336 (690)
Q Consensus 258 lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~ 336 (690)
++|+ + | . ..+. +...| ......+ ++.|+.++++||++
T Consensus 157 ---~lGl-~-----~----~-~~~~----------------------l~~~i------G~~~A~~llltG~~i~A~eA~~ 194 (288)
T PRK08290 157 ---RMGI-P-----G----V-EYFA----------------------HPWEL------GPRKAKELLFTGDRLTADEAHR 194 (288)
T ss_pred ---ccCc-C-----c----c-hHHH----------------------HHHHh------hHHHHHHHHHcCCCCCHHHHHH
Confidence 6665 1 0 0 0010 00111 2222223 46789999999999
Q ss_pred cCCeeEecchhHHHHHHHHHh
Q 005581 337 EGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 337 ~GLID~i~~~de~~~~l~~~~ 357 (690)
+||||++...+++.+.+.+.+
T Consensus 195 ~GLV~~vv~~~~l~~~a~~~a 215 (288)
T PRK08290 195 LGMVNRVVPRDELEAETLELA 215 (288)
T ss_pred CCCccEeeCHHHHHHHHHHHH
Confidence 999999998888776655543
No 207
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=99.18 E-value=1.6e-10 Score=122.14 Aligned_cols=165 Identities=12% Similarity=0.170 Sum_probs=117.6
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC------CCCCHHHH----------HHH-
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP------LSCGWGKV----------EEI- 200 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s------~Gg~~~~~----------~eI- 200 (690)
++.|++|+++.+ +. |..+.-.+.++.++|+++.+|+.|++|||+.+. .|+++... .++
T Consensus 19 ~~~Va~itlnr~--~~---Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~ 93 (278)
T PLN03214 19 PGGIAVVWLAKE--PV---NSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFW 93 (278)
T ss_pred CCCEEEEEECCC--CC---CCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHH
Confidence 477999999875 21 222334578999999999999999999998753 24444321 112
Q ss_pred ---HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCce-eEEEeecccc
Q 005581 201 ---RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIE-PQVQRIGKYK 275 (690)
Q Consensus 201 ---~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~-~~~~~~G~yK 275 (690)
.+.+.++...+|||||.++ .|..+|+.|+++||.+++.+.+.|+...+ ++|+. +
T Consensus 94 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~lGl~~p--------- 152 (278)
T PLN03214 94 LTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEV------------ALGIPVP--------- 152 (278)
T ss_pred HHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHH------------HhCCCCC---------
Confidence 1234567778999999999 56788999999999999999999998877 67773 3
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHH
Q 005581 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (690)
Q Consensus 276 sa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~ 354 (690)
..+..+ .+ .|.+......+ ++.|+.++++||+++||||++...+++.+.+.
T Consensus 153 ~~~~~~----------------------~l------~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~ 204 (278)
T PLN03214 153 KFWARL----------------------FM------GRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAA 204 (278)
T ss_pred ChhHHH----------------------HH------HHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHH
Confidence 111111 01 12233444444 46789999999999999999998888776554
Q ss_pred HH
Q 005581 355 ER 356 (690)
Q Consensus 355 ~~ 356 (690)
+.
T Consensus 205 ~~ 206 (278)
T PLN03214 205 SA 206 (278)
T ss_pred HH
Confidence 43
No 208
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.18 E-value=2.7e-10 Score=121.66 Aligned_cols=164 Identities=15% Similarity=0.103 Sum_probs=115.6
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHH----------------
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGK---------------- 196 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~---------------- 196 (690)
.++.|++|+|+.+= ..|..+...+.++.++++.+..|+.|++|||..++. |+++..
T Consensus 11 ~~~~Va~ItLnrP~----~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 86 (298)
T PRK12478 11 TAGPVATITLNRPE----QLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWD 86 (298)
T ss_pred ccCCEEEEEecCCc----ccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccC
Confidence 36789999999862 222234456789999999999999999999987652 444321
Q ss_pred -HHHH----------HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhc-C
Q 005581 197 -VEEI----------RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKV-G 263 (690)
Q Consensus 197 -~~eI----------~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKl-G 263 (690)
...+ ...+..+....|||||.++ .|..+|..|+++||.+++.+.+.++...+ ++ |
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~------------~l~G 154 (298)
T PRK12478 87 PGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYS------------RMWG 154 (298)
T ss_pred chhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEecccc------------cccc
Confidence 0111 1134456668999999999 57788999999999999999999998866 32 3
Q ss_pred ceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeE
Q 005581 264 IEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITN 342 (690)
Q Consensus 264 I~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~ 342 (690)
+-+ +. . +...| ......+ ++.|+.++++||+++||||+
T Consensus 155 ~~~-----------~~---------------------~---~~~~v------G~~~A~~llltg~~i~A~eA~~~GLV~~ 193 (298)
T PRK12478 155 AYL-----------TG---------------------M---WLYRL------SLAKVKWHSLTGRPLTGVQAAEAELINE 193 (298)
T ss_pred CCc-----------hh---------------------H---HHHHh------hHHHHHHHHHcCCccCHHHHHHcCCcce
Confidence 321 00 0 11112 2233333 46789999999999999999
Q ss_pred ecchhHHHHHHHHHh
Q 005581 343 VLYDDEVISMLKERL 357 (690)
Q Consensus 343 i~~~de~~~~l~~~~ 357 (690)
+...+++.+.+.+.+
T Consensus 194 vv~~~~l~~~a~~~a 208 (298)
T PRK12478 194 AVPFERLEARVAEVA 208 (298)
T ss_pred ecCHHHHHHHHHHHH
Confidence 999888877665544
No 209
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.17 E-value=3.7e-10 Score=120.83 Aligned_cols=164 Identities=13% Similarity=0.145 Sum_probs=114.2
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHH----------------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKV---------------- 197 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~---------------- 197 (690)
++.|++|+|+.+= ..|..+...+.++.++++++..|+.|++|||+..+. |+++...
T Consensus 17 ~~~V~~Itlnrp~----~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 92 (302)
T PRK08272 17 TGRIARITLNRPE----KGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGK 92 (302)
T ss_pred ECCEEEEEecCcc----ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccccc
Confidence 5689999999762 122233356789999999999999999999987652 4444322
Q ss_pred ---------------------HHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccch
Q 005581 198 ---------------------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFL 255 (690)
Q Consensus 198 ---------------------~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~ 255 (690)
..+.+.+..+...+|||||.++ .|..+|+.|+++||.++|.+.+.||...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~------- 165 (302)
T PRK08272 93 RQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT------- 165 (302)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch-------
Confidence 1122334455667899999999 57788999999999999999999988765
Q ss_pred hhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHH
Q 005581 256 GGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERL 334 (690)
Q Consensus 256 k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eA 334 (690)
++|.-+ +.. .+...+ ......+ ++.|..++++||
T Consensus 166 -----~~gg~~---------------------~~~-------------~~~~~v------G~~~A~~llltG~~i~a~eA 200 (302)
T PRK08272 166 -----RVWGVP---------------------ATG-------------MWAYRL------GPQRAKRLLFTGDCITGAQA 200 (302)
T ss_pred -----hcccCC---------------------hHH-------------HHHHHh------hHHHHHHHHHcCCccCHHHH
Confidence 221111 000 011112 2233333 467899999999
Q ss_pred HhcCCeeEecchhHHHHHHHHHh
Q 005581 335 KEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 335 l~~GLID~i~~~de~~~~l~~~~ 357 (690)
++.||||++...+++.+.+.+.+
T Consensus 201 ~~~GLv~~vv~~~~l~~~a~~la 223 (302)
T PRK08272 201 AEWGLAVEAVPPEELDERTERLV 223 (302)
T ss_pred HHcCCCceecCHHHHHHHHHHHH
Confidence 99999999998888776655443
No 210
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=99.16 E-value=3.5e-10 Score=118.18 Aligned_cols=166 Identities=16% Similarity=0.143 Sum_probs=121.4
Q ss_pred CeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHHH-------------HHH
Q 005581 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE-------------EIR 201 (690)
Q Consensus 139 ~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~~-------------eI~ 201 (690)
+.|++|+|+.+-.- +..+...+.++.++++++..|+.|++|||.-+.. |+++.... ...
T Consensus 13 ~~v~~itlnrp~~~----Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~ 88 (257)
T COG1024 13 DGIAVITLNRPEKL----NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQ 88 (257)
T ss_pred CCEEEEEecCcccc----cCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHH
Confidence 34999999887322 2223356789999999999999999999988753 55555421 122
Q ss_pred HHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCc
Q 005581 202 RHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (690)
Q Consensus 202 ~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep 280 (690)
..+..++...|||||.++ .|..+|+-|+++||.+++.+.+.+|...+ ++|+-| ..+..
T Consensus 89 ~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~------------~iGl~P---------g~g~~ 147 (257)
T COG1024 89 DLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEV------------NLGLLP---------GDGGT 147 (257)
T ss_pred HHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCccc------------ccccCC---------CCcHH
Confidence 356677788999999999 57788999999999999999999999988 788866 11111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecch-hHHHHHHHHHh
Q 005581 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD-DEVISMLKERL 357 (690)
Q Consensus 281 ~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~-de~~~~l~~~~ 357 (690)
+. + .|-.......+ ++.|..++++||++.||||++... +++++...+.+
T Consensus 148 ~~----------------------l------~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a 198 (257)
T COG1024 148 QR----------------------L------PRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELA 198 (257)
T ss_pred HH----------------------H------HHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHH
Confidence 10 1 22233344444 578999999999999999998774 57766655544
No 211
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=1.9e-10 Score=120.11 Aligned_cols=167 Identities=14% Similarity=0.084 Sum_probs=115.4
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH-----HH-----HH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE-----IR-----RH 203 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e-----I~-----~a 203 (690)
++.|++|+++.+=. .|..+...+.++.++++.+..|+.|++|||+..+ .|+++..... .. ..
T Consensus 10 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08259 10 NGPVTTVILNRPEV----RNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPM 85 (254)
T ss_pred ECCEEEEEecCCcc----ccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchh
Confidence 56899999998721 1222334578999999999999999999998764 3555543211 11 00
Q ss_pred HHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581 204 VVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (690)
Q Consensus 204 I~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~ 282 (690)
...+...+|||||.++ .|..+|+.|+++||.+++.+++.++...+ ++|+.+. .+..+.
T Consensus 86 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~---------~g~~~~ 144 (254)
T PRK08259 86 GPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCR------------RWGVPLI---------DGGTVR 144 (254)
T ss_pred hhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCccc------------ccCCCCC---------ccHHHH
Confidence 1111246899999999 46688999999999999999999988766 6676541 111110
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 283 ~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
+... +......+ ++.|..++++||+++||||++...+++.+.+.+.+
T Consensus 145 ----------------------l~~~------iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 192 (254)
T PRK08259 145 ----------------------LPRL------IGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELA 192 (254)
T ss_pred ----------------------HHHH------hCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHH
Confidence 1111 22233333 46789999999999999999999888877665544
No 212
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=99.16 E-value=2.5e-10 Score=119.60 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=109.0
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH--------H------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE--------E------ 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~--------e------ 199 (690)
++.|++|+++.+=. .+..+...+.++.++|+++..|+.|++|||.-.+ .|+++.... .
T Consensus 10 ~~~v~~itlnrp~~----~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 85 (262)
T PRK07509 10 EDGIADVRLNRPDK----MNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLP 85 (262)
T ss_pred eCCEEEEEecCccc----ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhH
Confidence 57899999998621 1222334578999999999999999999998654 245443221 1
Q ss_pred -----HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecc
Q 005581 200 -----IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (690)
Q Consensus 200 -----I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~ 273 (690)
+.+.+..++...|||||.++ .|..+|..|+++||.+++.+.+.++...+ ++|+-|
T Consensus 86 ~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p------- 146 (262)
T PRK07509 86 GNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEA------------KWGLVP------- 146 (262)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchh------------ccCCCC-------
Confidence 11223345567899999999 56788999999999999999999999877 677755
Q ss_pred ccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecc
Q 005581 274 YKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLY 345 (690)
Q Consensus 274 yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~ 345 (690)
..+..+. + .|.+......+ ++.|..++++||+++||||++..
T Consensus 147 --~~g~~~~----------------------l------~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 147 --DMAGTVS----------------------L------RGLVRKDVARELTYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred --CchHHHH----------------------H------HHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence 2211111 1 11122333334 45789999999999999999974
No 213
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.16 E-value=3.4e-10 Score=120.06 Aligned_cols=166 Identities=15% Similarity=0.125 Sum_probs=112.6
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhc-----CCCceEEEEEcC-C----CCCCHHHHH---------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAY-----DPRIVGIYLHIE-P----LSCGWGKVE--------- 198 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~-----D~~IkgVvL~i~-s----~Gg~~~~~~--------- 198 (690)
++.|++|.++ + +. .+..+...+.++.++++++.. |+.|++|||+-+ + .|+++....
T Consensus 24 ~~~ia~itl~-p--~~--~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~ 98 (287)
T PRK08788 24 ERNVMWMYMR-A--QP--RPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRD 98 (287)
T ss_pred cCCEEEEEEC-C--CC--CCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchH
Confidence 5678888875 3 21 222233457789999999987 899999999887 2 355554321
Q ss_pred H-------HHHHHHHHh---hcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeE
Q 005581 199 E-------IRRHVVDFK---KSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQ 267 (690)
Q Consensus 199 e-------I~~aI~~~r---~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~ 267 (690)
. +.+.+..+. ..+|||||.+++ |..+|+-|+++||.+++.+.+.++...+ ++|+-|
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev------------~lGl~p- 165 (287)
T PRK08788 99 ALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEI------------LFNLFP- 165 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchh------------hhCcCC-
Confidence 1 111122222 578999999995 6688999999999999999999999877 777754
Q ss_pred EEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecch
Q 005581 268 VQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD 346 (690)
Q Consensus 268 ~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~ 346 (690)
..+..+ .+...|. .....+ ++.|..++++||+++||||++...
T Consensus 166 --------~~g~~~----------------------~l~~~vG------~~~A~ellltG~~l~A~eA~~~GLV~~vv~~ 209 (287)
T PRK08788 166 --------GMGAYS----------------------FLARRVG------PKLAEELILSGKLYTAEELHDMGLVDVLVED 209 (287)
T ss_pred --------CchHHH----------------------HHHHHhh------HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc
Confidence 111111 1222222 222333 467899999999999999999988
Q ss_pred hHHHHHHHHHh
Q 005581 347 DEVISMLKERL 357 (690)
Q Consensus 347 de~~~~l~~~~ 357 (690)
+++.+.+.+.+
T Consensus 210 ~el~~~a~~~a 220 (287)
T PRK08788 210 GQGEAAVRTFI 220 (287)
T ss_pred hHHHHHHHHHH
Confidence 87766554443
No 214
>PRK08321 naphthoate synthase; Validated
Probab=99.15 E-value=3.3e-10 Score=121.25 Aligned_cols=167 Identities=13% Similarity=0.069 Sum_probs=114.3
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----------CCCCHHHH---------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----------LSCGWGKV--------- 197 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----------~Gg~~~~~--------- 197 (690)
++.|++|+++.+= ..|..+...+.++.++++.+..|+.|++|||+..+ .|+++...
T Consensus 32 ~~~va~itlnrP~----~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~ 107 (302)
T PRK08321 32 DQGTVRIAFDRPE----VRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAE 107 (302)
T ss_pred CCCEEEEEeCCcc----cccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccc
Confidence 5679999999871 11222334577999999999999999999998753 34554321
Q ss_pred -------H--HH-----HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEec-CCCeEEEeccceeccchhhhhhh
Q 005581 198 -------E--EI-----RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAP-PSAYFSLYGLTVQASFLGGVLEK 261 (690)
Q Consensus 198 -------~--eI-----~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~-p~~~vg~~Gv~~~~~~~k~lLeK 261 (690)
. .. .+....+....|||||.++ .|..+|.-|+++||.+++. +.+.++...+ +
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~------------~ 175 (302)
T PRK08321 108 GDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDA------------D 175 (302)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCcc------------c
Confidence 0 01 1223345567899999999 4678899999999999998 6899988766 5
Q ss_pred cCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCe
Q 005581 262 VGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFI 340 (690)
Q Consensus 262 lGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLI 340 (690)
+|+.+ ..+... .+.+. +......+ ++.|..++++||++.|||
T Consensus 176 ~Gl~p---------~~~~~~----------------------~L~r~------vG~~~A~~l~ltG~~~~A~eA~~~GLv 218 (302)
T PRK08321 176 VGSFD---------GGYGSA----------------------YLARQ------VGQKFAREIFFLGRTYSAEEAHDMGAV 218 (302)
T ss_pred cccCC---------CchHHH----------------------HHHHH------hCHHHHHHHHHcCCccCHHHHHHCCCc
Confidence 56543 000000 01122 22222333 467899999999999999
Q ss_pred eEecchhHHHHHHHHHh
Q 005581 341 TNVLYDDEVISMLKERL 357 (690)
Q Consensus 341 D~i~~~de~~~~l~~~~ 357 (690)
|++...+++.+.+.+.+
T Consensus 219 ~~vv~~~~l~~~a~~~a 235 (302)
T PRK08321 219 NAVVPHAELETEALEWA 235 (302)
T ss_pred eEeeCHHHHHHHHHHHH
Confidence 99998888776655443
No 215
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.14 E-value=5.1e-10 Score=117.18 Aligned_cols=155 Identities=17% Similarity=0.250 Sum_probs=109.7
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH---------------
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV--------------- 197 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~--------------- 197 (690)
.++.|++|.++.+= ..+..+...+.++.+.++.+..|+.|++|||...+ .|+++...
T Consensus 12 ~~~~v~~i~lnrp~----~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 87 (260)
T PRK07827 12 VDGGVATLTLDSPH----NRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARA 87 (260)
T ss_pred eeCCEEEEEEcCcc----ccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHH
Confidence 35689999998762 11222334578999999999999999999998764 24444321
Q ss_pred HHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 198 EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 198 ~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
..+.+.+..+...+|||||.++ .|..+|+-|+++||.+++.+.+.++...+ ++|+-| .
T Consensus 88 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~------------~~Gl~p---------~ 146 (260)
T PRK07827 88 REMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEA------------RIGVAP---------A 146 (260)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCccc------------ccCCCC---------C
Confidence 1234455666678999999999 46688999999999999999999999877 778755 2
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEec
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVL 344 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~ 344 (690)
.+..+. +..+...| ..+-++.|..++++||+++||||++.
T Consensus 147 ~g~~~~-----------------------l~~l~~~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~ 186 (260)
T PRK07827 147 IISLTL-----------------------LPRLSPRA-----AARYYLTGEKFGAAEAARIGLVTAAA 186 (260)
T ss_pred cccchh-----------------------HHhhhHHH-----HHHHHHhCCccCHHHHHHcCCcccch
Confidence 222221 11111111 11224678999999999999999984
No 216
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.13 E-value=6.9e-10 Score=115.46 Aligned_cols=154 Identities=11% Similarity=0.079 Sum_probs=107.8
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH-----H----HHHHH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV-----E----EIRRH 203 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~-----~----eI~~a 203 (690)
.++.|++|+++.+=. .|..+...+.++.++++.+..|+.|++|||...+ .|+++... . .+.+.
T Consensus 6 ~~~~v~~itlnrp~~----~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK06072 6 SREGYAIVTMSRPDK----LNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPI 81 (248)
T ss_pred EECCEEEEEECCccc----ccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHH
Confidence 357899999998721 1222334578899999999999999999998754 35565432 1 12344
Q ss_pred HHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581 204 VVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (690)
Q Consensus 204 I~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~ 282 (690)
+..+...+|||||.+++ |..+|..|+++||.+++.+++.++...+ ++|+.| ..+.++.
T Consensus 82 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~------------~~Gl~p---------~~g~~~~ 140 (248)
T PRK06072 82 IREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQ------------RLGLAS---------DTGVAYF 140 (248)
T ss_pred HHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchh------------hcCcCC---------CchHHHH
Confidence 55566788999999994 6688999999999999999999987755 677755 1111110
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEe
Q 005581 283 RKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNV 343 (690)
Q Consensus 283 ~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i 343 (690)
+...+. ....+-++.|..++++||+++||||.+
T Consensus 141 ----------------------l~~~~g------~~a~~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 141 ----------------------LLKLTG------QRFYEILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred ----------------------HHHHhh------HHHHHHHHhCCccCHHHHHHCCCcccc
Confidence 111111 111223567899999999999999975
No 217
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=99.13 E-value=6.1e-10 Score=116.07 Aligned_cols=154 Identities=14% Similarity=0.153 Sum_probs=111.5
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH---------HHHHHHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV---------EEIRRHV 204 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~---------~eI~~aI 204 (690)
++.|++|+++.+ +. |..+...+.++.+.++.+..||.+++|||..++ .|+++... ..+.+.+
T Consensus 8 ~~~v~~itlnrp--~~---Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 82 (251)
T TIGR03189 8 DGKLLRLRLARP--KA---NIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLV 82 (251)
T ss_pred eCCEEEEEeCCC--Cc---CCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHH
Confidence 567999999998 21 223445678999999999999999999998764 35554431 1123445
Q ss_pred HHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccC
Q 005581 205 VDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTR 283 (690)
Q Consensus 205 ~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~ 283 (690)
..+...+|||||.+++ |..+|..|+++||.+++.+.+.++...+ ++|+.+. .+ .+
T Consensus 83 ~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~---------~~-~~-- 138 (251)
T TIGR03189 83 IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEI------------VLGVFAP---------AA-SC-- 138 (251)
T ss_pred HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchh------------hcCCCCC---------ch-HH--
Confidence 5566789999999994 6689999999999999999999999877 7777541 00 00
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecch
Q 005581 284 KTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD 346 (690)
Q Consensus 284 ~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~ 346 (690)
.+. |.+......+ ++.|..++++||+++||||++...
T Consensus 139 --------------------~l~------~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~ 176 (251)
T TIGR03189 139 --------------------LLP------ERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAED 176 (251)
T ss_pred --------------------HHH------HHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCc
Confidence 011 2233333344 456889999999999999999754
No 218
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=99.12 E-value=1.1e-09 Score=119.27 Aligned_cols=167 Identities=9% Similarity=-0.016 Sum_probs=119.0
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHHH-------------
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKVE------------- 198 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~~------------- 198 (690)
.++.|++|+++.+= ..+..+...+.++.+.++.+..||.|++|||+..+ .|+++....
T Consensus 9 ~~~~v~~itLnrP~----~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (342)
T PRK05617 9 VEGGVGVITLNRPK----ALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADR 84 (342)
T ss_pred EECCEEEEEECCCc----cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHH
Confidence 35789999998752 11222335578899999999999999999999865 255554321
Q ss_pred ---HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccc
Q 005581 199 ---EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (690)
Q Consensus 199 ---eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~y 274 (690)
.+.+....+...+|||||.++ .|..+|..|+++||.++|.+.+.++...+ ++|+-|
T Consensus 85 ~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~------------~lGl~P-------- 144 (342)
T PRK05617 85 FFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPET------------GIGFFP-------- 144 (342)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCcc------------ccCcCC--------
Confidence 111233445667899999999 46788999999999999999999999988 888876
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHH
Q 005581 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (690)
Q Consensus 275 Ksa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~ 354 (690)
..+..+.. .. + ......+-++.|..++++||++.||||++...+++.....
T Consensus 145 -~~g~~~~L----------------------~r-----~-~g~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~ 195 (342)
T PRK05617 145 -DVGGTYFL----------------------SR-----A-PGALGTYLALTGARISAADALYAGLADHFVPSADLPALLD 195 (342)
T ss_pred -CccceeEe----------------------hh-----c-ccHHHHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHH
Confidence 22222211 00 0 0111223356799999999999999999999888776544
Q ss_pred HH
Q 005581 355 ER 356 (690)
Q Consensus 355 ~~ 356 (690)
+.
T Consensus 196 ~~ 197 (342)
T PRK05617 196 AL 197 (342)
T ss_pred HH
Confidence 43
No 219
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.10 E-value=5.5e-10 Score=120.48 Aligned_cols=158 Identities=15% Similarity=0.026 Sum_probs=110.3
Q ss_pred eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-----CCCHHHHH---------------H
Q 005581 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-----SCGWGKVE---------------E 199 (690)
Q Consensus 140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-----Gg~~~~~~---------------e 199 (690)
.+++|.|+.+= ..+..+...+.++.++++++..|++|++|||...++ |+++.... .
T Consensus 37 ~~A~ItLNRP~----k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~ 112 (360)
T TIGR03200 37 YNAWIILDNPK----QYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRL 112 (360)
T ss_pred EEEEEEECCCC----ccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHH
Confidence 45568888762 112223345789999999999999999999988652 44443221 1
Q ss_pred HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
..+.+..+....|||||.++ .|..+|.-|+++||.+++.+.+.|+...+ ++|+-| ..+
T Consensus 113 ~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~------------rlGl~P---------~~G 171 (360)
T TIGR03200 113 FNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGP------------KHGSAP---------IGG 171 (360)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchh------------ccCCCC---------Ccc
Confidence 22344556677899999999 57788999999999999999999999888 777765 111
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHH
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV 349 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~ 349 (690)
..+ .+...+...|. ..-++.|..++++||++.||||++...+++
T Consensus 172 gt~----------------------rLprlvG~~rA-----~~llltGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 172 ATD----------------------FLPLMIGCEQA-----MVSGTLCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred HHH----------------------HHHHhhCHHHH-----HHHHHhCCcCcHHHHHHcCChheecCchhc
Confidence 111 02222222221 122567899999999999999999876654
No 220
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.08 E-value=8.1e-10 Score=130.90 Aligned_cols=167 Identities=11% Similarity=0.057 Sum_probs=119.8
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH---------------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE--------------- 198 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~--------------- 198 (690)
++.|++|+|+.+= ..|..+...+.++.++++.+..|+.|++|||.-.+ .|+++....
T Consensus 14 ~~~v~~itlnrp~----~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 89 (715)
T PRK11730 14 EDGIAELVFDAPG----SVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLH 89 (715)
T ss_pred CCCEEEEEEcCCC----CCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHH
Confidence 5789999998751 12222334578999999999999999999998865 245553321
Q ss_pred HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (690)
Q Consensus 199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa 277 (690)
.+.+.+..+...+|||||.++ .|..+|+-||++||.+++.+.+.+|...+ ++|+-| ..
T Consensus 90 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~------------~lGl~p---------~~ 148 (715)
T PRK11730 90 FANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPET------------KLGIMP---------GF 148 (715)
T ss_pred HHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchh------------hcCCCC---------Cc
Confidence 122344556678999999999 57788999999999999999999999988 788866 22
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
+.++. + .|-+......+ ++.|+.++++||+++||||++...+++.+...+.
T Consensus 149 g~~~~----------------------L------~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~ 200 (715)
T PRK11730 149 GGTVR----------------------L------PRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALAL 200 (715)
T ss_pred hHHHH----------------------H------HHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHH
Confidence 22221 1 12122333333 4678999999999999999999888877655443
Q ss_pred h
Q 005581 357 L 357 (690)
Q Consensus 357 ~ 357 (690)
+
T Consensus 201 a 201 (715)
T PRK11730 201 L 201 (715)
T ss_pred H
Confidence 3
No 221
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.07 E-value=1.3e-09 Score=112.20 Aligned_cols=169 Identities=16% Similarity=0.151 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCe
Q 005581 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAY 242 (690)
Q Consensus 164 ~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~ 242 (690)
...+.++|+.+.+| ++|.|.++||||.+.+++.|.++|+++ ..++++|+. .|.|+|.+||++||+|||.|.+.
T Consensus 77 se~v~raI~~~~~~---~~IdLii~TpGG~v~AA~~I~~~l~~~---~~~v~v~VP~~A~SAGTlIALaADeIvM~p~a~ 150 (285)
T PF01972_consen 77 SEFVLRAIREAPKD---KPIDLIIHTPGGLVDAAEQIARALREH---PAKVTVIVPHYAMSAGTLIALAADEIVMGPGAV 150 (285)
T ss_pred HHHHHHHHHhcCCC---CceEEEEECCCCcHHHHHHHHHHHHhC---CCCEEEEECcccccHHHHHHHhCCeEEECCCCc
Confidence 45678888887655 467888999999999999999999965 578999998 78899999999999999999999
Q ss_pred EEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 005581 243 FSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER 322 (690)
Q Consensus 243 vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~ 322 (690)
+|.+-...........++.+--+ +.-+..-+++. +.+-.++.+ +.+. +|+..+-+. +++.+++++
T Consensus 151 LGpiDPqi~~~pA~sil~~~~~K------~~~~i~D~tlI---ladia~KAi----~q~~-~~v~~lL~~-~~~~eka~~ 215 (285)
T PF01972_consen 151 LGPIDPQIGQYPAASILKAVEQK------PPDEIDDQTLI---LADIAEKAI----RQVR-EFVKELLKD-KMDEEKAEE 215 (285)
T ss_pred cCCCCccccCCChHHHHHHHHhc------cccccCHHHHH---HHHHHHHHH----HHHH-HHHHHHHHc-CCCHHHHHH
Confidence 99886644433332222221000 00000001111 111111222 2221 233333333 466666666
Q ss_pred HHh---------cCcccHHHHHhcCCeeEecchhHHHHHH
Q 005581 323 FIN---------DGVYKVERLKEEGFITNVLYDDEVISML 353 (690)
Q Consensus 323 ~~~---------~~v~~a~eAl~~GLID~i~~~de~~~~l 353 (690)
+.+ +.+++.+||+++||==...-++|+.+.+
T Consensus 216 ia~~L~~g~~tHdypi~~eea~~lGL~V~t~~p~ei~~lm 255 (285)
T PF01972_consen 216 IAEKLSSGKWTHDYPITVEEAKELGLPVSTDMPEEIYELM 255 (285)
T ss_pred HHHHhcCCCCCCCCCCCHHHHHHcCCCcCCCCcHHHHHHH
Confidence 544 2466899999999965556667776655
No 222
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.06 E-value=1.5e-09 Score=113.35 Aligned_cols=156 Identities=12% Similarity=0.086 Sum_probs=107.5
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH--------------H
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV--------------E 198 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~--------------~ 198 (690)
.++.|++|.++.+= ..+..+.-.+.++.++++++. +.|++|||..++ .|+++... .
T Consensus 10 ~~~~i~~itlnrp~----~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 83 (255)
T PRK07112 10 QQGDVCFLQLHRPE----AQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAE 83 (255)
T ss_pred eeCCEEEEEEcCCC----ccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHH
Confidence 35689999999862 112223345778999999887 359999998654 34544321 1
Q ss_pred HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (690)
Q Consensus 199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa 277 (690)
.+.+.+..+...+|||||.++ .|..+|+.|+++||.+++.+.+.|+...+ ++|+-|. .
T Consensus 84 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~------------~~Gl~p~---------~ 142 (255)
T PRK07112 84 PLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSEL------------LFGLIPA---------C 142 (255)
T ss_pred HHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchh------------hhccCcc---------h
Confidence 123445566678999999999 56788999999999999999999998877 6776441 0
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhH
Q 005581 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDE 348 (690)
Q Consensus 278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de 348 (690)
+.+ .+... +......+ ++.|..++++||+++||||++...++
T Consensus 143 ~~~-----------------------~l~~~------vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 185 (255)
T PRK07112 143 VLP-----------------------FLIRR------IGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSD 185 (255)
T ss_pred hhH-----------------------HHHHH------hCHHHHHHHHHhCCcccHHHHHHcCCCceecCcHH
Confidence 000 01122 22233333 56789999999999999999986554
No 223
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.03 E-value=1.8e-09 Score=127.75 Aligned_cols=167 Identities=11% Similarity=0.041 Sum_probs=120.5
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHHH---------------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE--------------- 198 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~~--------------- 198 (690)
++.|++|+++.+= ..|..+...+.++.++|+++..|+.|++|||+-+.. |+++....
T Consensus 14 ~~gva~Itlnrp~----~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 89 (714)
T TIGR02437 14 EDGIAELKFDAPG----SVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLL 89 (714)
T ss_pred cCCEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHH
Confidence 5789999998751 122223345789999999999999999999987642 44543211
Q ss_pred HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (690)
Q Consensus 199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa 277 (690)
.+.+.+..+...+|||||.++ .|..+|+-||++||.+++.+.+.+|+..+ ++|+-| ..
T Consensus 90 ~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv------------~lGl~P---------g~ 148 (714)
T TIGR02437 90 FANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPET------------KLGIMP---------GF 148 (714)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchh------------hcCCCC---------Cc
Confidence 133445566678999999999 57789999999999999999999999988 888866 22
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
+..+. +... +......+ ++.|..+++++|++.||||++...+++.+...+.
T Consensus 149 Ggt~r----------------------L~rl------iG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~ 200 (714)
T TIGR02437 149 GGTVR----------------------LPRV------IGADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQL 200 (714)
T ss_pred cHHHH----------------------HHHH------hCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHH
Confidence 22211 1111 22222223 5678999999999999999999888877665544
Q ss_pred h
Q 005581 357 L 357 (690)
Q Consensus 357 ~ 357 (690)
+
T Consensus 201 a 201 (714)
T TIGR02437 201 L 201 (714)
T ss_pred H
Confidence 4
No 224
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.01 E-value=3.4e-09 Score=116.81 Aligned_cols=165 Identities=11% Similarity=0.002 Sum_probs=115.0
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHH-------H-------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVE-------E------- 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~-------e------- 199 (690)
++.|++|+|+.+= ..|..+...+.++.++|+.+..|+.|++|||+..+ .|+++.... .
T Consensus 18 ~~~v~~ItLnrP~----~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 93 (379)
T PLN02874 18 KGRVRVITLNRPR----QLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYR 93 (379)
T ss_pred ECCEEEEEECCCc----cccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHH
Confidence 5678889988762 11222334578899999999999999999998764 255554321 1
Q ss_pred HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
+...+..+...+|||||.++ .|..+|.-|+++||.+++.+.+.++...+ ++|+-| ..+
T Consensus 94 ~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~------------~iGl~p---------~~g 152 (379)
T PLN02874 94 MYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEA------------SVGFHT---------DCG 152 (379)
T ss_pred HHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEecccc------------ccCcCC---------Chh
Confidence 11113345567899999999 57788999999999999999999999877 777765 222
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~ 355 (690)
..+. +...+. .+ ...-++.|..+++++|+++||||++...+++.+...+
T Consensus 153 ~~~~----------------------L~rl~g-~~-----a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 201 (379)
T PLN02874 153 FSYI----------------------LSRLPG-HL-----GEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKR 201 (379)
T ss_pred HHHH----------------------HHhhhH-HH-----HHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHH
Confidence 2221 011111 01 1123578999999999999999999998887763333
No 225
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.01 E-value=8.7e-09 Score=105.89 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=112.2
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH-----------HHHHH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV-----------EEIRR 202 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~-----------~eI~~ 202 (690)
++.|++|+++.+ + .+..+...+.++.++++++. +++++||+..+. .|+++... ..+.+
T Consensus 10 ~~~v~~itln~~--~---~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 82 (229)
T PRK06213 10 EDGVATITLDDG--K---VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGST 82 (229)
T ss_pred cCCEEEEEeCCC--C---CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHH
Confidence 568999999974 1 12223345788999999887 457889998764 24444321 12334
Q ss_pred HHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC-CeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCc
Q 005581 203 HVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQ 280 (690)
Q Consensus 203 aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~-~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep 280 (690)
.+.++...+|||||.++ .|..+|..|+++||.++|.+. +.++...+ ++|+.+.
T Consensus 83 l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~------------~~Gl~~~------------- 137 (229)
T PRK06213 83 LARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEV------------AIGMTMP------------- 137 (229)
T ss_pred HHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchh------------hhCCcCC-------------
Confidence 45566667999999999 567889999999999999999 88998877 6676430
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHh
Q 005581 281 LTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKERL 357 (690)
Q Consensus 281 ~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~ 357 (690)
.. .-..+. . .+.....++ ++.|..++++||+++||||++...+++.+...+.+
T Consensus 138 ~~-------~~~~l~-----------~------~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 191 (229)
T PRK06213 138 HA-------AIELAR-----------D------RLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAA 191 (229)
T ss_pred hH-------HHHHHH-----------H------HcCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHH
Confidence 00 000000 1 111122222 56789999999999999999998888877665544
No 226
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.99 E-value=4.4e-09 Score=116.22 Aligned_cols=159 Identities=12% Similarity=0.004 Sum_probs=112.7
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH--------------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE-------------- 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e-------------- 199 (690)
++.|++|+|+.+= ..|..+...+.++.++|+.+..|+.|++|||+..+ .||++.....
T Consensus 44 ~g~v~~ItLNRP~----~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~ 119 (401)
T PLN02157 44 SGCSRTAILNRPP----ALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFF 119 (401)
T ss_pred ECCEEEEEECCCC----ccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHH
Confidence 5678888888772 22222334567899999999999999999999765 3566643211
Q ss_pred --HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 200 --IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 200 --I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
.++....+...+|||||.++ .+..||.-|+++||.+++.+.+.++...+ ++|+-| .
T Consensus 120 ~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~------------~iGl~P---------d 178 (401)
T PLN02157 120 SSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPET------------IIGFHP---------D 178 (401)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhh------------hcCCCC---------C
Confidence 11223345567999999999 57788999999999999999999999877 777766 2
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHH
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV 349 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~ 349 (690)
.+..+. +..+ +. .+ ...=+++|..++++||++.||||++...+++
T Consensus 179 ~G~s~~-----------L~rl-----------~G-~~-----a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l 223 (401)
T PLN02157 179 AGASFN-----------LSHL-----------PG-RL-----GEYLGLTGLKLSGAEMLACGLATHYIRSEEI 223 (401)
T ss_pred ccHHHH-----------HHHh-----------hh-HH-----HHHHHHcCCcCCHHHHHHcCCceEEeCHhHH
Confidence 333321 1111 11 01 1122567999999999999999999988876
No 227
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.98 E-value=3.2e-09 Score=125.62 Aligned_cols=170 Identities=12% Similarity=0.141 Sum_probs=119.9
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEc-CC----CCCCHHHH-------------H
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHI-EP----LSCGWGKV-------------E 198 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i-~s----~Gg~~~~~-------------~ 198 (690)
.++.|++|+++.+= ...|..+...+.++.+.|+++..|+.|++|||.- .. .|+++... .
T Consensus 7 ~~~~Va~itlnrp~---~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 83 (699)
T TIGR02440 7 REDGIAILTIDVPG---EKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQ 83 (699)
T ss_pred cCCCEEEEEECCCC---CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHH
Confidence 45789999999761 1112233345789999999999999999999743 22 24554431 1
Q ss_pred HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeEEEeccceeccchhhhhhhcCceeEEEeecccc
Q 005581 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (690)
Q Consensus 199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~--~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yK 275 (690)
...+.+..+...+|||||.++ .|..+|+.||++||.++|.++ +.+|...+ ++|+-|
T Consensus 84 ~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev------------~lGl~p--------- 142 (699)
T TIGR02440 84 QGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEV------------QLGLLP--------- 142 (699)
T ss_pred HHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhh------------cccCCC---------
Confidence 123345567778999999999 577899999999999999976 68999988 888866
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHH
Q 005581 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLK 354 (690)
Q Consensus 276 sa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~ 354 (690)
..+..+. + .|-+......+ ++.|..+++++|+++||||++...+++.+...
T Consensus 143 ~~g~~~~----------------------L------~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~ 194 (699)
T TIGR02440 143 GSGGTQR----------------------L------PRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSILLDTAV 194 (699)
T ss_pred CccHHHH----------------------H------HHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHH
Confidence 1221111 1 11222233333 46789999999999999999999888887766
Q ss_pred HHhC
Q 005581 355 ERLG 358 (690)
Q Consensus 355 ~~~g 358 (690)
+.+.
T Consensus 195 ~~A~ 198 (699)
T TIGR02440 195 EMAL 198 (699)
T ss_pred HHHH
Confidence 6553
No 228
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.97 E-value=6.9e-09 Score=114.17 Aligned_cols=167 Identities=13% Similarity=0.047 Sum_probs=117.2
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC----CCCHHHHH------------H-H
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL----SCGWGKVE------------E-I 200 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~----Gg~~~~~~------------e-I 200 (690)
++.|++|+|+.+= ..|..+.-.+.+|.++|+++..|++|++|||+..+. ||++.... + .
T Consensus 16 ~~~i~~ItLnRP~----~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f 91 (381)
T PLN02988 16 KSSVRILTLNRPK----QLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFF 91 (381)
T ss_pred ECCEEEEEECCCC----ccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHH
Confidence 5789999998772 112223345788999999999999999999998652 56654421 0 1
Q ss_pred ---HHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 201 ---RRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 201 ---~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
+.....+...+|||||.++ .+..+|.-|+++||.+++.+.+.++...+ ++|+-| .
T Consensus 92 ~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~------------~iGl~P---------d 150 (381)
T PLN02988 92 SDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPET------------ALGLFP---------D 150 (381)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhh------------hcCcCC---------C
Confidence 1122234457899999999 57788999999999999999999998877 677655 3
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
.+..+. +..++. .++ ..=.+.|..+++++|++.||||++...+++.+...+.
T Consensus 151 ~G~s~~-----------L~rl~G------------~~~-----~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l 202 (381)
T PLN02988 151 VGASYF-----------LSRLPG------------FFG-----EYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADL 202 (381)
T ss_pred ccHHHH-----------HHHHHH------------HHH-----HHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHH
Confidence 333321 111111 111 1225678999999999999999999888877765554
Q ss_pred h
Q 005581 357 L 357 (690)
Q Consensus 357 ~ 357 (690)
.
T Consensus 203 a 203 (381)
T PLN02988 203 C 203 (381)
T ss_pred H
Confidence 4
No 229
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.94 E-value=6.7e-09 Score=123.14 Aligned_cols=168 Identities=10% Similarity=0.103 Sum_probs=119.2
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHH---------H----H
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKV---------E----E 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~---------~----e 199 (690)
++.|++|+++.+= ...|..+...+.++.+.++++..|++|++|||.-.. .|+++... . .
T Consensus 13 ~~~va~itlnrp~---~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 89 (708)
T PRK11154 13 EDNIAVITIDVPG---EKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQ 89 (708)
T ss_pred CCCEEEEEECCCC---CCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHH
Confidence 6789999999761 111222334578999999999999999999997532 24554321 1 1
Q ss_pred HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCC--eEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSA--YFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~--~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
..+.+..+...+|||||.++ .|..+|+-||++||.+++.+++ .+|...+ ++|+-| .
T Consensus 90 ~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~------------~lGl~p---------~ 148 (708)
T PRK11154 90 GQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEV------------QLGLLP---------G 148 (708)
T ss_pred HHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccc------------cCCCCC---------C
Confidence 23345566678999999999 5778999999999999999874 8999988 888866 2
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~ 355 (690)
.+..+. +. |-+......+ ++.|..++++||+++||||++...+++.+...+
T Consensus 149 ~gg~~~----------------------L~------r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~ 200 (708)
T PRK11154 149 SGGTQR----------------------LP------RLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVE 200 (708)
T ss_pred ccHHhH----------------------HH------hhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHH
Confidence 222111 11 1222333333 467899999999999999999988887766655
Q ss_pred Hh
Q 005581 356 RL 357 (690)
Q Consensus 356 ~~ 357 (690)
.+
T Consensus 201 ~A 202 (708)
T PRK11154 201 LA 202 (708)
T ss_pred HH
Confidence 54
No 230
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.91 E-value=4.1e-08 Score=101.67 Aligned_cols=166 Identities=12% Similarity=0.119 Sum_probs=110.1
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCce-EEEEEcCC----CCCCHHHHH-------------
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIV-GIYLHIEP----LSCGWGKVE------------- 198 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~Ik-gVvL~i~s----~Gg~~~~~~------------- 198 (690)
.++.|++|.|+.+ +. +-.+...+.+|.++++++..|++++ .||+.-++ .|+++....
T Consensus 6 ~~~~v~~i~Lnrp--~~---Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 6 KRGNLFILTLTGD--GE---HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ecCCEEEEEeCCC--Cc---CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 3578999999987 21 1123345778999999999999976 45455442 355543211
Q ss_pred -HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecC-CCeEEEeccceeccchhhhhhhcCce-eEEEeeccc
Q 005581 199 -EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPP-SAYFSLYGLTVQASFLGGVLEKVGIE-PQVQRIGKY 274 (690)
Q Consensus 199 -eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p-~~~vg~~Gv~~~~~~~k~lLeKlGI~-~~~~~~G~y 274 (690)
.+.+.+..+...+|||||.++ .|..+|..||++||.++|.+ .+.++...+ ++|+. +.
T Consensus 81 ~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~------------~~Gl~~p~------- 141 (239)
T PLN02267 81 AKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEV------------DIGLPLPD------- 141 (239)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEecccc------------ccCCCCCh-------
Confidence 122344456667899999999 46688999999999999974 578888766 66664 20
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HH-HHhcCcccHHHHHhcCCeeEecc-hhHHHH
Q 005581 275 KSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI-ER-FINDGVYKVERLKEEGFITNVLY-DDEVIS 351 (690)
Q Consensus 275 Ksa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v-~~-~~~~~v~~a~eAl~~GLID~i~~-~de~~~ 351 (690)
.+ ... + .|.+..... ++ ++.|..++++||++.||||++.. .+++.+
T Consensus 142 --~~----------------~~~-------l------~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~ 190 (239)
T PLN02267 142 --YF----------------MAL-------L------RAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVE 190 (239)
T ss_pred --HH----------------HHH-------H------HHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHH
Confidence 00 000 1 122222233 23 56789999999999999999986 467776
Q ss_pred HHHHHh
Q 005581 352 MLKERL 357 (690)
Q Consensus 352 ~l~~~~ 357 (690)
...+.+
T Consensus 191 ~a~~~A 196 (239)
T PLN02267 191 AAVRLG 196 (239)
T ss_pred HHHHHH
Confidence 655544
No 231
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.89 E-value=2.4e-08 Score=110.52 Aligned_cols=159 Identities=9% Similarity=-0.011 Sum_probs=111.4
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHHHH--------------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKVEE-------------- 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~~e-------------- 199 (690)
.+.+.+|+|+.+= ..|..+..++.++.++|+.+..|++|++|||+.++ -||++....+
T Consensus 49 ~~~~~~ItLNRP~----~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f 124 (407)
T PLN02851 49 RAKSRAAILNRPS----SLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFF 124 (407)
T ss_pred ECCEEEEEECCCC----cCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHH
Confidence 4567778887762 22223334578899999999999999999999864 3566543311
Q ss_pred --HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 200 --IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 200 --I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
+++....+...+|||||.++ .+.++|..|+++||.+++.+.+.++...+ ++|+-| .
T Consensus 125 ~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~------------~iGl~P---------d 183 (407)
T PLN02851 125 ENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEV------------QMGFHP---------D 183 (407)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchh------------ccCCCC---------C
Confidence 12223334457899999999 57788999999999999999999999877 777765 2
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHH
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEV 349 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~ 349 (690)
.|..|. +..+- | .....-.++|..+++++|++.||+|.+...+++
T Consensus 184 vG~s~~-----------------------L~rl~---g--~~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l 228 (407)
T PLN02851 184 AGASYY-----------------------LSRLP---G--YLGEYLALTGQKLNGVEMIACGLATHYCLNARL 228 (407)
T ss_pred ccHHHH-----------------------HHHhc---C--HHHHHHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence 222221 11110 1 011122467999999999999999999887776
No 232
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.87 E-value=1e-08 Score=100.56 Aligned_cols=160 Identities=19% Similarity=0.216 Sum_probs=114.2
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc----CCCcch----------hhh-----
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID----SPGGDA----------LAS----- 448 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin----SpGG~~----------~as----- 448 (690)
+.|--|.++.+-.. +..+-.|...|.+.|.+-.++.++|+|||..+ |.|-.. ...
T Consensus 40 ~gvR~i~l~npKk~------NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqt 113 (287)
T KOG1682|consen 40 NGVREITLNNPKKL------NTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQT 113 (287)
T ss_pred cceeeeeecCcccc------chhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHH
Confidence 45666666666542 33444567788888888888899999999765 333222 111
Q ss_pred -hHHHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccchHHHHHHcCCceeeeccc
Q 005581 449 -DLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFNLGKLYEKIGFNKEIISRG 523 (690)
Q Consensus 449 -~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~~~~l~~klGi~~~~i~~g 523 (690)
..+..-|+++ +.|||+-++|+|+.+|+.+...||.++|+.++.+-- .|+|...|+.
T Consensus 114 c~dvmn~Irn~--pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv----------------- 174 (287)
T KOG1682|consen 114 CTDVMNDIRNL--PVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV----------------- 174 (287)
T ss_pred HHHHHHHHhcC--CCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-----------------
Confidence 1122334444 999999999999999999999999999999998753 4445444433
Q ss_pred chhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccChHHHHHH
Q 005581 524 KYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAI 602 (690)
Q Consensus 524 ~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~ 602 (690)
+..|-++.. .++.+++|..++++||+-.|||.++.+.++.-.+
T Consensus 175 ------------------------------------AlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e 218 (287)
T KOG1682|consen 175 ------------------------------------ALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKE 218 (287)
T ss_pred ------------------------------------hHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHH
Confidence 334444443 5577899999999999999999999998887666
Q ss_pred HHHHcC
Q 005581 603 AKQKAN 608 (690)
Q Consensus 603 a~~~a~ 608 (690)
+.+.++
T Consensus 219 ~~~i~~ 224 (287)
T KOG1682|consen 219 IEEITN 224 (287)
T ss_pred HHHHHH
Confidence 665543
No 233
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.85 E-value=2.4e-08 Score=118.67 Aligned_cols=157 Identities=19% Similarity=0.193 Sum_probs=108.8
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEE-EcCC----CCCCHHHH-------------HH
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYL-HIEP----LSCGWGKV-------------EE 199 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL-~i~s----~Gg~~~~~-------------~e 199 (690)
++.|++|+++.+=. ..|-.+.....++.++|+++..|+.|++||| ...+ -|+++... ..
T Consensus 20 ~~gVa~itlnrP~~---~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 96 (737)
T TIGR02441 20 KGDVAVVKIDSPNS---KVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQLSQE 96 (737)
T ss_pred ECCEEEEEEcCCCC---CCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHHHHH
Confidence 67899999987620 1122233457889999999999999998765 4433 24444322 12
Q ss_pred HHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCC--CeEEEeccceeccchhhhhhhcCceeEEEeeccccc
Q 005581 200 IRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPS--AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKS 276 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~--~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKs 276 (690)
..+.+..+...+|||||.++ .|..+|+.||++||.++|.++ +.+|...+ ++|+-| .
T Consensus 97 ~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv------------~lGl~P---------g 155 (737)
T TIGR02441 97 GQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEV------------MLGLLP---------G 155 (737)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchh------------hhCCCC---------C
Confidence 23445556678999999999 577899999999999999987 47999888 788766 2
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecch
Q 005581 277 AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYD 346 (690)
Q Consensus 277 a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~ 346 (690)
.+..+. +. |-+......+ ++.|+.+++++|+++||||++...
T Consensus 156 ~Ggt~r----------------------Lp------rliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 156 AGGTQR----------------------LP------KLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred ccHhhh----------------------HH------HhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 222211 11 1122222223 567899999999999999999875
No 234
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.6e-08 Score=100.09 Aligned_cols=161 Identities=19% Similarity=0.137 Sum_probs=116.7
Q ss_pred EEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEecCcc
Q 005581 143 TMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCG 222 (690)
Q Consensus 143 vI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~aa 222 (690)
+|-|-++|++.- .+.|+.+|--...++.-|=|++.||||||.+.+...|++.++..| +..-+||+..-+.
T Consensus 94 Ii~lg~~Idd~v---------a~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik-~~V~Tic~G~Aas 163 (275)
T KOG0840|consen 94 IVFLGQPIDDDV---------ANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIK-PDVSTICVGLAAS 163 (275)
T ss_pred eeeeCCcCcHHH---------HHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhC-CCceeeehhhHHh
Confidence 456777887743 346788887777777779999999999999999999999999885 2333444333445
Q ss_pred hhhhHHhhcc-CeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 005581 223 EKEYYLACAC-EELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI 301 (690)
Q Consensus 223 s~gY~LAsaa-D~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~ 301 (690)
.++++|+..+ -+.|+-|.+.++++.+... ++..- +++. .-.+-+..+
T Consensus 164 ~aalLLaaG~KG~R~alPnsriMIhQP~gg-------------------------a~Gqa--~Di~-----i~akE~~~~ 211 (275)
T KOG0840|consen 164 MAALLLAAGAKGKRYALPNSRIMIHQPSGG-------------------------AGGQA--TDIV-----IQAKELMRI 211 (275)
T ss_pred HHHHHHhcCCCcceeecCCceeEEeccCCC-------------------------cCccc--hHHH-----HHHHHHHHH
Confidence 5666666655 4799999999999977221 00110 1111 112234566
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcC-cccHHHHHhcCCeeEecc
Q 005581 302 YGNWLDKVSSTKGKRKEDIERFINDG-VYKVERLKEEGFITNVLY 345 (690)
Q Consensus 302 ~~~f~~~Va~~Rg~~~~~v~~~~~~~-v~~a~eAl~~GLID~i~~ 345 (690)
++++.+.+++..|.+.+++.+-++.. -++++||+++||||+|..
T Consensus 212 k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 212 KEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred HHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence 77788888999999999999988874 569999999999999854
No 235
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=98.83 E-value=5.8e-08 Score=99.07 Aligned_cols=171 Identities=14% Similarity=0.120 Sum_probs=118.6
Q ss_pred CCcEEEEEee-cccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccC----CCcchh------------hhh
Q 005581 387 GDQIAVIRAS-GSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS----PGGDAL------------ASD 449 (690)
Q Consensus 387 ~~~IAvI~i~-G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinS----pGG~~~------------as~ 449 (690)
.+++..|-++ .|-. -++.+..+..++.++|+.+.+|+++.-+++..+. .|.+.. .++
T Consensus 14 ~~g~~~I~~~~~Pkk------~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~ 87 (266)
T KOG0016|consen 14 ENGPFFIALNIRPKK------KNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESD 87 (266)
T ss_pred cCCcEEEEecCCCcc------cccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccch
Confidence 3566666665 4332 2455667888999999999999999777776642 333221 122
Q ss_pred HHHHHHH-------Hh-cCCCCEEEEECccccHHHHHHHHhcCeEEEecCceeccccccccccchHHHHHHcCCceeeec
Q 005581 450 LMWREIR-------LL-SESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIIS 521 (690)
Q Consensus 450 ~i~~~I~-------~l-~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~ 521 (690)
.....+. .+ .-+||+||.++|.|.|-|..|.--||++||++.+. |.-.+.++|..++..+
T Consensus 88 ~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~------------F~TPfa~lGq~PEG~S 155 (266)
T KOG0016|consen 88 KASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAW------------FQTPFAKLGQSPEGCS 155 (266)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceE------------EeccchhcCCCCCcce
Confidence 2322222 22 34999999999999999999999999999999887 3344567777666665
Q ss_pred ccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHhcCCcccHHHHHHcCCcccccChH---
Q 005581 522 RGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVD-KMEEYAQGRVWTGNDAASRGLVDALGGFS--- 597 (690)
Q Consensus 522 ~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~-~v~~l~~Grv~tg~eA~e~GLVD~ig~~~--- 597 (690)
+-.+..++ ..+ +-+.++-|+.++++||.+.|||+++...+
T Consensus 156 s~t~p~im------------------------------------G~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~ 199 (266)
T KOG0016|consen 156 SVTLPKIM------------------------------------GSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFN 199 (266)
T ss_pred eeeehHhh------------------------------------chhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHH
Confidence 54333222 222 44556779999999999999999998754
Q ss_pred -HHHHHHHHHcCCCC
Q 005581 598 -RAVAIAKQKANIPE 611 (690)
Q Consensus 598 -~ai~~a~~~a~l~~ 611 (690)
+++..+++++.+++
T Consensus 200 ~~v~~~ikq~s~l~p 214 (266)
T KOG0016|consen 200 EEVLKKIKQYSKLSP 214 (266)
T ss_pred HHHHHHHHHHhcCCH
Confidence 55666677777654
No 236
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=98.59 E-value=2.1e-07 Score=92.37 Aligned_cols=162 Identities=16% Similarity=0.205 Sum_probs=114.0
Q ss_pred CeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCC-------C---------CH-H------
Q 005581 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-------C---------GW-G------ 195 (690)
Q Consensus 139 ~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~G-------g---------~~-~------ 195 (690)
+.|+.|.++.|=+... ....+..++.+++..|..|++|..|+|..++-| | ++ .
T Consensus 27 ~giakItinRPevrNA----frP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~r 102 (282)
T COG0447 27 DGIAKITINRPEVRNA----FRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPR 102 (282)
T ss_pred CceEEEEecChhhhcc----CCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcc
Confidence 5799999998854432 345789999999999999999999999866321 1 11 1
Q ss_pred -HHHHHHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecc
Q 005581 196 -KVEEIRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGK 273 (690)
Q Consensus 196 -~~~eI~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~ 273 (690)
...++.+.|+ ..+|||||.+.+ +..+|-.|-..||.-+++..+.+|-.|.-. |.
T Consensus 103 LnvLdlQrlIR---~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~V---------------------GS 158 (282)
T COG0447 103 LNVLDLQRLIR---TMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKV---------------------GS 158 (282)
T ss_pred cchhhHHHHHH---hCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCc---------------------cc
Confidence 1133444444 568999999994 667899999999999999999999998822 22
Q ss_pred ccc-cCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHH
Q 005581 274 YKS-AGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVIS 351 (690)
Q Consensus 274 yKs-a~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~ 351 (690)
|.. .|..| +...|.+. ..++ ++-++.|+++||++.|||+.+...+++.+
T Consensus 159 FD~G~Gs~y-----------------------lar~VGqK------kArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~ 209 (282)
T COG0447 159 FDGGYGSSY-----------------------LARIVGQK------KAREIWFLCRQYDAEEALDMGLVNTVVPHADLEK 209 (282)
T ss_pred ccCcccHHH-----------------------HHHHhhhh------hhHHhhhhhhhccHHHHHhcCceeeeccHHHHHH
Confidence 211 01111 12223332 2334 45689999999999999999999888776
Q ss_pred HHHHHh
Q 005581 352 MLKERL 357 (690)
Q Consensus 352 ~l~~~~ 357 (690)
+..+++
T Consensus 210 e~v~W~ 215 (282)
T COG0447 210 ETVQWA 215 (282)
T ss_pred HHHHHH
Confidence 544443
No 237
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=98.43 E-value=0.00014 Score=84.02 Aligned_cols=156 Identities=11% Similarity=0.011 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHh-cCCCCEEEEECccccHHHHHHHH----
Q 005581 414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAM---- 481 (690)
Q Consensus 414 ~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~---- 481 (690)
.++...+.++-+.+ -++ -||.-+|+||-.+-. ...+.+.+..+ ....|.|+.+-|.|.|||||..|
T Consensus 386 ~a~Kaarfi~lc~~-~~i-Plv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~ 463 (569)
T PLN02820 386 SALKGAHFIELCAQ-RGI-PLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAY 463 (569)
T ss_pred HHHHHHHHHHHHHh-cCC-CEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCC
Confidence 45666666665543 344 366668999865421 11223334333 34899999999999999999998
Q ss_pred hcCeEEEecCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 005581 482 AAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAF 561 (690)
Q Consensus 482 aaD~I~A~p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~ 561 (690)
.+|++||-|++.+|.+|. -....-++ + .+..... ....+..+++++.+++.+.+.|+.
T Consensus 464 ~~d~~~awp~A~i~vmg~---e~aa~il~-~----------~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------- 521 (569)
T PLN02820 464 SPNFLFMWPNARIGVMGG---AQAAGVLA-Q----------IERENKK-RQGIQWSKEEEEAFKAKTVEAYER------- 521 (569)
T ss_pred CCCEEEECCCCeEEecCH---HHHHHHHH-H----------HHhhhhh-hccccCCccHHHHHHHHHHHHHHH-------
Confidence 679999999998776552 11111111 0 0000000 011223334444555555444432
Q ss_pred hcCCCHHHHHHHhcCCcccHHHHHHcCCcccccChHHHHHHHHHHcCC
Q 005581 562 SRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKANI 609 (690)
Q Consensus 562 ~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~~~ai~~a~~~a~l 609 (690)
.-++-.|-+.|+||+|-.+.+......+...+
T Consensus 522 ----------------~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~ 553 (569)
T PLN02820 522 ----------------EANPYYSTARLWDDGVIDPADTRRVLGLCLSA 553 (569)
T ss_pred ----------------hCCHHHHHHcCCcCcccCHHHHHHHHHHHHHH
Confidence 22566788999999999988776665554443
No 238
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=98.35 E-value=0.00043 Score=79.40 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=59.1
Q ss_pred cchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhh-------HHHHHHHHh-cCCCCEEEEECccccHHHHHHHHh
Q 005581 411 SGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASD-------LMWREIRLL-SESKPVIASMSDVAASGGYYMAMA 482 (690)
Q Consensus 411 ~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~-------~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~a 482 (690)
+....+...+.++.+.+. ++ -||.-+||||-..-... .+.+.+..+ ....|.|+.+.|.++||||+..++
T Consensus 332 ~~~~~~K~~r~i~~a~~~-~l-PlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~ 409 (512)
T TIGR01117 332 DIDSSDKIARFIRFCDAF-NI-PIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCS 409 (512)
T ss_pred CHHHHHHHHHHHHHHHHc-CC-CEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhcc
Confidence 345677888888877653 33 57777899985321111 122233333 348999999999999998777764
Q ss_pred ----cCeEEEecCceecccc
Q 005581 483 ----AGTILAENLTLTGSIG 498 (690)
Q Consensus 483 ----aD~I~A~p~t~~GSIG 498 (690)
+|++||.|++.+|.+|
T Consensus 410 ~~~~~d~~~a~p~a~~~v~~ 429 (512)
T TIGR01117 410 KHLGADQVYAWPTAEIAVMG 429 (512)
T ss_pred ccCCCCEEEEcCCCeEeecC
Confidence 9999999998877655
No 239
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.35 E-value=2.1e-06 Score=91.22 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=110.9
Q ss_pred CCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-----CCCcchhhhhHH---------
Q 005581 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-----SPGGDALASDLM--------- 451 (690)
Q Consensus 386 ~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-----SpGG~~~as~~i--------- 451 (690)
+++...+|.+|.|-. .|+.+--|...+...|.+.+.++.++.|||..+ |.||++.+...+
T Consensus 44 ~~~~~r~itLNRPKa------LNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~ 117 (401)
T KOG1684|consen 44 GKGCARVITLNRPKA------LNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEV 117 (401)
T ss_pred cCCceeEEEecCchh------hccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHH
Confidence 467899999999876 355566677888889999999999999999876 478886542221
Q ss_pred -------HHHHHHhcC-CCCEEEEECccccHHHHHHHHhcCeEEEecCceecc----ccccccccc---hHHHHHHcCCc
Q 005581 452 -------WREIRLLSE-SKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGS----IGVVTGKFN---LGKLYEKIGFN 516 (690)
Q Consensus 452 -------~~~I~~l~~-~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p~t~~GS----IGv~~~~~~---~~~l~~klGi~ 516 (690)
|..+..+.. .||.||.|+|..+|||..|+..+-++||++.|++.. ||++|.... +..+..++|.
T Consensus 118 ~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg~lg~- 196 (401)
T KOG1684|consen 118 KKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPGYLGL- 196 (401)
T ss_pred HHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCccHHHH-
Confidence 111111211 799999999999999999999999999999998763 776665432 2222111111
Q ss_pred eeeecccchhhhhhccCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccCh
Q 005581 517 KEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGF 596 (690)
Q Consensus 517 ~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~~ 596 (690)
. .-++|++++|.+|+..||....+.-
T Consensus 197 -----------Y-------------------------------------------LgLTG~rl~GaD~~~~GlATHyv~S 222 (401)
T KOG1684|consen 197 -----------Y-------------------------------------------LGLTGQRLSGADALRCGLATHYVPS 222 (401)
T ss_pred -----------h-------------------------------------------hhhccceecchHHHHhcchhhccch
Confidence 0 1167999999999999999988765
Q ss_pred HH
Q 005581 597 SR 598 (690)
Q Consensus 597 ~~ 598 (690)
+.
T Consensus 223 ~~ 224 (401)
T KOG1684|consen 223 EK 224 (401)
T ss_pred hh
Confidence 53
No 240
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.31 E-value=1.6e-06 Score=86.18 Aligned_cols=158 Identities=16% Similarity=0.180 Sum_probs=113.0
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCC-----CCH--------HHH----HH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-----CGW--------GKV----EE 199 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~G-----g~~--------~~~----~e 199 (690)
++..|.+|.++.+-...+- +...+.++.+.++....|++++.|+|+--.|| .++ ..+ ..
T Consensus 37 ~~~GItvl~mNRpa~kNsl----~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~ 112 (291)
T KOG1679|consen 37 KDEGITILNMNRPAKKNSL----GRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNG 112 (291)
T ss_pred CCCCeEEEecCChhhhccH----HHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHH
Confidence 3456777777777544321 22457789999999999999999999988776 122 111 33
Q ss_pred HHHHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccC
Q 005581 200 IRRHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAG 278 (690)
Q Consensus 200 I~~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ 278 (690)
||..+.++.+...||||.+++ +..+|.-+|.+||..++..++.+|++.. |++|-| .+|
T Consensus 113 lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET------------~laiiP---------GaG 171 (291)
T KOG1679|consen 113 LRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVET------------KLAIIP---------GAG 171 (291)
T ss_pred HHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhcccccccc------------ceeeec---------CCC
Confidence 666666666678999999995 5588999999999999999999999877 777776 444
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchh
Q 005581 279 DQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDD 347 (690)
Q Consensus 279 ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~d 347 (690)
.+-. + .|-+...-.++ +++++++++.||.+.|||+.+....
T Consensus 172 GtQR-----------L-----------------pR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qn 213 (291)
T KOG1679|consen 172 GTQR-----------L-----------------PRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQN 213 (291)
T ss_pred ccch-----------h-----------------HHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcC
Confidence 4321 1 12122222333 5678999999999999999886443
No 241
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=98.10 E-value=4e-06 Score=84.07 Aligned_cols=165 Identities=19% Similarity=0.259 Sum_probs=109.1
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-------------------CCC-CHH-
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-------------------LSC-GWG- 195 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-------------------~Gg-~~~- 195 (690)
.+..|..+.|+.|-.-.. .+.....++-+.++....||++++|+|...+ +.| +++
T Consensus 28 ~~~~V~hv~lnRPsk~Na----l~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR 103 (292)
T KOG1681|consen 28 AQPFVYHVQLNRPSKLNA----LNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDVAR 103 (292)
T ss_pred CCCeEEEEEecCcchhhh----hhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccchHhh
Confidence 466888899988732211 1123356899999999999999999995443 111 111
Q ss_pred HHHHHHHHHHHHhh-------cCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeE
Q 005581 196 KVEEIRRHVVDFKK-------SGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQ 267 (690)
Q Consensus 196 ~~~eI~~aI~~~r~-------sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~ 267 (690)
..+.+++.|+.+++ ..||||+.++ .|-++|.-|.++||..|+...+.+....| .+|+-.+
T Consensus 104 ~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEV------------DvglaAD 171 (292)
T KOG1681|consen 104 KGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEV------------DVGLAAD 171 (292)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeee------------eeehhhc
Confidence 12446666666543 5899999999 57788999999999999999999988766 4444332
Q ss_pred EEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEe-cc
Q 005581 268 VQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNV-LY 345 (690)
Q Consensus 268 ~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i-~~ 345 (690)
+ | ++ +.+...+.+ -..+++ .++++-|.+.||++.|||-++ .+
T Consensus 172 v---G-------TL----------~RlpkvVGn----------------~s~~~elafTar~f~a~EAl~~GLvSrvf~d 215 (292)
T KOG1681|consen 172 V---G-------TL----------NRLPKVVGN----------------QSLARELAFTARKFSADEALDSGLVSRVFPD 215 (292)
T ss_pred h---h-------hH----------hhhhHHhcc----------------hHHHHHHHhhhhhcchhhhhhcCcchhhcCC
Confidence 1 1 00 111222211 011222 246788999999999999999 55
Q ss_pred hhHHHHHH
Q 005581 346 DDEVISML 353 (690)
Q Consensus 346 ~de~~~~l 353 (690)
.+++++..
T Consensus 216 k~~ll~~~ 223 (292)
T KOG1681|consen 216 KEELLNGA 223 (292)
T ss_pred HHHHHhhh
Confidence 66666543
No 242
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=98.04 E-value=0.0012 Score=75.58 Aligned_cols=268 Identities=16% Similarity=0.106 Sum_probs=145.0
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCC---------HHHHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhc
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCG---------WGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA 231 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~---------~~~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsa 231 (690)
.....+.++++.|.+. ++-- |.-++|.|+. +.+.-.+...+.+++. +.|+|+++. .|..++-|++..
T Consensus 76 ~~~~Ki~ra~~~A~~~-~~P~-v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~ 152 (493)
T PF01039_consen 76 VHGEKIARAIELALEN-GLPL-VYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSG-GIPQISVVTGPCTGGGAYLAAL 152 (493)
T ss_dssp HHHHHHHHHHHHHHHH-TEEE-EEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHT-TS-EEEEEESEEEGGGGHHHHH
T ss_pred ccceeeehHHHHHHHc-CCCc-EEeccccccccccchhhhhhhhhHHHHHHHHHHhc-CCCeEEEEccccccchhhcccc
Confidence 4567789999999876 3443 3446676661 1233456677777776 999999997 566667777888
Q ss_pred cCeeEecCC-CeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 005581 232 CEELYAPPS-AYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVS 310 (690)
Q Consensus 232 aD~I~a~p~-~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va 310 (690)
||.++|.+. +.+++.|...- +..+.+.
T Consensus 153 ~d~~i~~~~~a~i~l~GP~vv---------------------------~~~~Ge~------------------------- 180 (493)
T PF01039_consen 153 SDFVIMVKGTARIFLAGPRVV---------------------------ESATGEE------------------------- 180 (493)
T ss_dssp SSEEEEETTTCEEESSTHHHH---------------------------HHHHSSC-------------------------
T ss_pred cCccccCccceEEEecccccc---------------------------ccccCcc-------------------------
Confidence 999999998 99998887211 0000011
Q ss_pred HhcCCCHHHHHHHHhcCcccH-HHHHhcCCeeEecch-hHHHHHHHHHhCCCC---CC---CCCcccc---c-------c
Q 005581 311 STKGKRKEDIERFINDGVYKV-ERLKEEGFITNVLYD-DEVISMLKERLGVQK---DK---NLPMVDY---R-------K 372 (690)
Q Consensus 311 ~~Rg~~~~~v~~~~~~~v~~a-~eAl~~GLID~i~~~-de~~~~l~~~~g~~~---~~---~~~~v~~---~-------~ 372 (690)
.+.+++ + .+ .-+.+.|.+|.+... +++++.+++.+..-+ .. ..+.+.- . .
T Consensus 181 ----~~~~~l-----g---G~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp~~~~~~~~~~p~~~~~d~~~~~~~l~~ 248 (493)
T PF01039_consen 181 ----VDSEEL-----G---GADVHAAKSGVVDYVVDDEEDALAQIRRLLSYLPSPASNNFEDPPRVPTSDPPDRDEELDS 248 (493)
T ss_dssp ----TSHHHH-----H---BHHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-SSTSSTTSS--BSSSSSGSSSCGGGHG
T ss_pred ----ccchhh-----h---hhhhhcccCCCceEEEechHHHHHHHHHhhcccccccccccCCCcccccCCCccccccccc
Confidence 111111 0 01 124678999999754 466777777664322 11 1111110 0 0
Q ss_pred cccc---------------ccc----cc-ccCCCCCcEEEEEeeccccc----CCCCCCCCCcchHHHHHHHHHHHHHhC
Q 005581 373 YSGV---------------RRW----TL-GLTGGGDQIAVIRASGSISR----VRSPLSLSSSGIIGEQLIEKIRKVRES 428 (690)
Q Consensus 373 y~~~---------------~~~----~~-~~~~~~~~IAvI~i~G~I~~----~~~~~~~~~~~~~~~~l~~~l~~a~~D 428 (690)
.... ... .. +..+..=-++..+++|.-+. .............++...+.++-+..
T Consensus 249 ~~P~~~~~~yD~r~ii~~i~D~~~f~E~~~~~g~~~vtg~arl~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~- 327 (493)
T PF01039_consen 249 IIPDDRRRPYDMRDIIARIVDDGSFFELKPGYGKNIVTGFARLGGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA- 327 (493)
T ss_dssp CS-SSTTS---HHHHHHHHSGGGBEEEESTTSSTTEEEEEEEETTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-
T ss_pred ccccccCCCCCcceeeEecccCCCceeccccccCCeEEeeeeeCCcceEEEEeccccccccCChHHHHHHHHHHHHHHh-
Confidence 0000 000 00 01111112455555553321 10000011122345666666666655
Q ss_pred CCceEEEEEccCCCcchhhh-------hHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhc----CeEEEecCceecc
Q 005581 429 KRYKAAIIRIDSPGGDALAS-------DLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA----GTILAENLTLTGS 496 (690)
Q Consensus 429 ~~VkaVVLrinSpGG~~~as-------~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aa----D~I~A~p~t~~GS 496 (690)
-++ -||.-+|+||=.+-.. ..+.+.+..+ ....|+|+.+-+-+.||||+..++. |.++|-|++.+|.
T Consensus 328 ~~i-Plv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~v 406 (493)
T PF01039_consen 328 FNI-PLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGV 406 (493)
T ss_dssp TT---EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEES
T ss_pred hCC-ceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeee
Confidence 355 5677779887543211 1122333333 2289999999999999999988888 9999999999886
Q ss_pred cc
Q 005581 497 IG 498 (690)
Q Consensus 497 IG 498 (690)
++
T Consensus 407 m~ 408 (493)
T PF01039_consen 407 MG 408 (493)
T ss_dssp S-
T ss_pred cC
Confidence 65
No 243
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=97.96 E-value=0.00019 Score=75.62 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=74.1
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCc---eEEEEEccCCCcchhh-------hhHHHHHHHH
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRY---KAAIIRIDSPGGDALA-------SDLMWREIRL 457 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~V---kaVVLrinSpGG~~~a-------s~~i~~~I~~ 457 (690)
..|+|+--+++... .+.+....+.+.+.++.|.+|... -.+|+-++|+|+...- .-.++..+..
T Consensus 59 r~v~v~a~D~t~~G------GS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ 132 (274)
T TIGR03133 59 KPVVVAAQEGRFQG------GSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILD 132 (274)
T ss_pred EEEEEEEECCCccC------cCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHH
Confidence 34666666666553 233456778999999999874432 2588888998876421 1234555555
Q ss_pred hcCCCCEEEEECcc--ccHHHHHHHHhcCeEEEecCceecc
Q 005581 458 LSESKPVIASMSDV--AASGGYYMAMAAGTILAENLTLTGS 496 (690)
Q Consensus 458 l~~~KPVVa~v~g~--AaSGGy~iA~aaD~I~A~p~t~~GS 496 (690)
++...|+|+.+.|. |+||+.|+++.||+++|++.+.+|.
T Consensus 133 ls~~vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~ 173 (274)
T TIGR03133 133 ARAAVPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGL 173 (274)
T ss_pred HhCCCCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEec
Confidence 55569999999999 8999999999999999999876554
No 244
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=97.87 E-value=0.00012 Score=72.50 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=115.0
Q ss_pred CeEEEEEEceeeccccccccCCCCC---HHHHHHHHHHhhcCCCceEEEEEcCCCC--------------CCHHHH---H
Q 005581 139 GSVLTMKLRGQIADQLKSRFSSGLS---LPQICENFVKAAYDPRIVGIYLHIEPLS--------------CGWGKV---E 198 (690)
Q Consensus 139 ~~VlvI~l~G~I~~~~~~~~~~~~s---~~~i~~~L~~Aa~D~~IkgVvL~i~s~G--------------g~~~~~---~ 198 (690)
+.|-.|.|+.+=.- +++| +..+.+.|.+-+++.+++.|+|.-+++- |.--++ +
T Consensus 40 ~gvR~i~l~npKk~-------NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFq 112 (287)
T KOG1682|consen 40 NGVREITLNNPKKL-------NTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQ 112 (287)
T ss_pred cceeeeeecCcccc-------chhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHH
Confidence 56667777765222 2244 3456667777777788999999766531 111111 3
Q ss_pred HHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccccc
Q 005581 199 EIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (690)
Q Consensus 199 eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa 277 (690)
...+.+..+|+.+.||+|-++ .++-+|..|-..||.+++...+.|...|. ++|+-. |
T Consensus 113 tc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~------------~vGlFC---------S- 170 (287)
T KOG1682|consen 113 TCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGA------------GVGLFC---------S- 170 (287)
T ss_pred HHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCC------------ceeeEe---------c-
Confidence 456677778888999999999 46677999999999999999999999888 444422 1
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDI-ERFINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 278 ~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v-~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
.| .||-.|.+++... .-+++|.+.+++||+-.||+.++...+|+..++.+.
T Consensus 171 -TP---------------------------GvAlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i 222 (287)
T KOG1682|consen 171 -TP---------------------------GVALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEI 222 (287)
T ss_pred -Cc---------------------------chhHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHH
Confidence 01 2444566555433 345789999999999999999999999988776655
Q ss_pred h
Q 005581 357 L 357 (690)
Q Consensus 357 ~ 357 (690)
.
T Consensus 223 ~ 223 (287)
T KOG1682|consen 223 T 223 (287)
T ss_pred H
Confidence 4
No 245
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=97.66 E-value=0.0007 Score=69.73 Aligned_cols=146 Identities=13% Similarity=0.114 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCC----CCCCHHHH------------HHH-------HHHHHHHhhcCCeEEEEe
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEP----LSCGWGKV------------EEI-------RRHVVDFKKSGKFIIGYV 218 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s----~Gg~~~~~------------~eI-------~~aI~~~r~sgKpVvAy~ 218 (690)
-.+.++.++|..|.+|+++.-+++.-++ -|.++... .+. .-.+..|-+..||+||.+
T Consensus 35 e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~v 114 (266)
T KOG0016|consen 35 EDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALV 114 (266)
T ss_pred HHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3477899999999999998777775543 12222111 112 124555656789999999
Q ss_pred cC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHH
Q 005581 219 PV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTAL 297 (690)
Q Consensus 219 ~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ 297 (690)
++ +-+-|-.|.-.||.+|++..+.+--.- .++|..|+.- ..++.
T Consensus 115 NGPAIGlgasil~lcD~V~A~Dka~F~TPf------------a~lGq~PEG~---------Ss~t~-------------- 159 (266)
T KOG0016|consen 115 NGPAIGLGASILPLCDYVWASDKAWFQTPF------------AKLGQSPEGC---------SSVTL-------------- 159 (266)
T ss_pred cCCccchhhHHhhhhheEEeccceEEeccc------------hhcCCCCCcc---------eeeee--------------
Confidence 95 555577788889999999888875552 3889888543 33331
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHH-HHhcCcccHHHHHhcCCeeEecchhHHHHHHHHH
Q 005581 298 LDNIYGNWLDKVSSTKGKRKEDIER-FINDGVYKVERLKEEGFITNVLYDDEVISMLKER 356 (690)
Q Consensus 298 ld~~~~~f~~~Va~~Rg~~~~~v~~-~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~ 356 (690)
.+.+..+...+ ++-+..++++||.+.|||+++....++-+.+.++
T Consensus 160 --------------p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ 205 (266)
T KOG0016|consen 160 --------------PKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKK 205 (266)
T ss_pred --------------hHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHH
Confidence 11122233333 4568999999999999999998777666555443
No 246
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=97.53 E-value=0.00071 Score=72.12 Aligned_cols=103 Identities=18% Similarity=0.169 Sum_probs=74.8
Q ss_pred cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCC---ceEEEEEccCCCcchh-------hhhHHHHHHHHh
Q 005581 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKR---YKAAIIRIDSPGGDAL-------ASDLMWREIRLL 458 (690)
Q Consensus 389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~---VkaVVLrinSpGG~~~-------as~~i~~~I~~l 458 (690)
.|+|+--+++... .+.+....+.+...++.|.++.. ...+|+-++|+|+... +.-.++..+..+
T Consensus 69 ~v~v~a~D~tf~G------GS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~l 142 (301)
T PRK07189 69 PVVVAAQEGRFMG------GSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDL 142 (301)
T ss_pred EEEEEEECCCccC------cCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHH
Confidence 4555555555542 33445678899999999887651 2367788899887642 122345555556
Q ss_pred cCCCCEEEEECcc--ccHHHHHHHHhcCeEEEecCceeccc
Q 005581 459 SESKPVIASMSDV--AASGGYYMAMAAGTILAENLTLTGSI 497 (690)
Q Consensus 459 ~~~KPVVa~v~g~--AaSGGy~iA~aaD~I~A~p~t~~GSI 497 (690)
+...|+|+.+.|. |++|+-|++++||+++|++.+.+|.-
T Consensus 143 s~~VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla 183 (301)
T PRK07189 143 RAAVPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS 183 (301)
T ss_pred hCCCCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc
Confidence 5569999999999 99999999999999999998766543
No 247
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=97.42 E-value=0.00074 Score=70.69 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=63.1
Q ss_pred chHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHhc-CCCCEEEEECccccHHHHHHHHhc
Q 005581 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 412 ~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l~-~~KPVVa~v~g~AaSGGy~iA~aa 483 (690)
...++...+.++.+.+.. + -||--+||||..... ...+.+.+..+. ...|+|+.+-|.|.|||+|..+.|
T Consensus 81 ~~g~rKa~R~~~lA~~~~-l-PvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~ 158 (256)
T PRK12319 81 PEGYRKALRLMKQAEKFG-R-PVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVA 158 (256)
T ss_pred HHHHHHHHHHHHHHHHcC-C-CEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcC
Confidence 346777777777776543 2 477778999986421 233555555543 389999999999999999999999
Q ss_pred CeEEEecCceecccc
Q 005581 484 GTILAENLTLTGSIG 498 (690)
Q Consensus 484 D~I~A~p~t~~GSIG 498 (690)
|+++|.|++.++.++
T Consensus 159 D~v~m~~~a~~~v~~ 173 (256)
T PRK12319 159 DQVWMLENTMYAVLS 173 (256)
T ss_pred CEEEEecCceEEEcC
Confidence 999999998765443
No 248
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.34 E-value=0.0013 Score=70.68 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=60.9
Q ss_pred chHHHHHHHHHHHHHhCCCceEEEEEccCCCcchh-------hhhHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhc
Q 005581 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL-------ASDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 412 ~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~-------as~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aa 483 (690)
...++...+.++.+.+.. .-||--+|+||...- .+..|.+.+..+ ....|+|+.+-|-|.|||.|..+.|
T Consensus 137 p~g~rKa~Rlm~lA~~f~--lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~a 214 (322)
T CHL00198 137 PGGYRKALRLMKHANKFG--LPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIG 214 (322)
T ss_pred HHHHHHHHHHHHHHHHcC--CCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcC
Confidence 446677777777766543 357777899998642 123455555443 3489999999999999999988889
Q ss_pred CeEEEecCceecc
Q 005581 484 GTILAENLTLTGS 496 (690)
Q Consensus 484 D~I~A~p~t~~GS 496 (690)
|+++|.+++.++-
T Consensus 215 D~V~m~e~a~~sV 227 (322)
T CHL00198 215 DSIMMLEYAVYTV 227 (322)
T ss_pred CeEEEeCCeEEEe
Confidence 9999999987543
No 249
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=97.34 E-value=0.0027 Score=69.94 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhc
Q 005581 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 412 ~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aa 483 (690)
...++...+.++.+.+.. .-||--+|+||..... ++.|.+.+..+ ...+|+|+.|-|-+.|||.+..++|
T Consensus 204 peGyRKAlR~mklAekf~--lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~a 281 (431)
T PLN03230 204 PNGYRKALRFMRHAEKFG--FPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCG 281 (431)
T ss_pred HHHHHHHHHHHHHHHHcC--CCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcC
Confidence 356677777777766543 3577789999975421 34455666555 3479999999999988888877889
Q ss_pred CeEEEecCceecccc
Q 005581 484 GTILAENLTLTGSIG 498 (690)
Q Consensus 484 D~I~A~p~t~~GSIG 498 (690)
|+++|.+++.++.++
T Consensus 282 D~VlMle~A~ysVis 296 (431)
T PLN03230 282 NRMLMMENAVYYVAS 296 (431)
T ss_pred CEEEEecCCEEEecC
Confidence 999999998755433
No 250
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.32 E-value=0.0054 Score=65.46 Aligned_cols=88 Identities=24% Similarity=0.327 Sum_probs=61.5
Q ss_pred CCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHhc-CCCCEEEEECccccHHHHHH-
Q 005581 409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLS-ESKPVIASMSDVAASGGYYM- 479 (690)
Q Consensus 409 ~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l~-~~KPVVa~v~g~AaSGGy~i- 479 (690)
+.+....+.+.+.++.+.+. ++- ||.-.+|+|..... .-.+...+..+. ...|.|+.+.|.++||+.+.
T Consensus 136 S~g~~~~eKi~r~~e~A~~~-~lP-lV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~ 213 (292)
T PRK05654 136 SMGSVVGEKIVRAVERAIEE-KCP-LVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASF 213 (292)
T ss_pred CccHHHHHHHHHHHHHHHHc-CCC-EEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHH
Confidence 34456788999988888765 454 55556888764311 112333454453 48999999999999997665
Q ss_pred HHhcCeEEEecCceecccc
Q 005581 480 AMAAGTILAENLTLTGSIG 498 (690)
Q Consensus 480 A~aaD~I~A~p~t~~GSIG 498 (690)
++.+|+++|.|++.+|..|
T Consensus 214 a~~~D~iia~p~A~ig~aG 232 (292)
T PRK05654 214 AMLGDIIIAEPKALIGFAG 232 (292)
T ss_pred HHcCCEEEEecCcEEEecC
Confidence 6679999999998877544
No 251
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=97.27 E-value=0.0012 Score=76.80 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=63.0
Q ss_pred chHHHHHHHHHHHHHhCCCceEEEEEccCCCcchh-------hhhHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhc
Q 005581 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL-------ASDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 412 ~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~-------as~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aa 483 (690)
..+++...+.++.|.+.. .-||--+|+||..+. .+..|.+.+..+ ....|+|+.|-|-|.|||.|..++|
T Consensus 225 peGyRKAlRlmkLAekfg--LPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~a 302 (762)
T PLN03229 225 PHGYRKALRMMYYADHHG--FPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCA 302 (762)
T ss_pred HHHHHHHHHHHHHHHHcC--CCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcC
Confidence 345677777777666543 357778999998652 234455656655 3479999999999999999999999
Q ss_pred CeEEEecCceecccc
Q 005581 484 GTILAENLTLTGSIG 498 (690)
Q Consensus 484 D~I~A~p~t~~GSIG 498 (690)
|+++|.+++.++.+|
T Consensus 303 D~VlMle~A~~sVis 317 (762)
T PLN03229 303 NKLLMLENAVFYVAS 317 (762)
T ss_pred CEEEEecCCeEEecC
Confidence 999999998755443
No 252
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.26 E-value=0.0074 Score=64.17 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh----hhH---HHHHHHHh--cCCCCEEEEECccccHHHHHH
Q 005581 409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA----SDL---MWREIRLL--SESKPVIASMSDVAASGGYYM 479 (690)
Q Consensus 409 ~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a----s~~---i~~~I~~l--~~~KPVVa~v~g~AaSGGy~i 479 (690)
+.+....+.+.++++.|.+.. + .+|+-.+|.|+...- -.. +..++..+ ..+.|.|+.+.|.++||+.+.
T Consensus 148 SmG~v~geKi~ra~e~A~~~r-l-PlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas 225 (296)
T CHL00174 148 SMGSVVGEKITRLIEYATNES-L-PLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTAS 225 (296)
T ss_pred CcCHHHHHHHHHHHHHHHHcC-C-CEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHH
Confidence 344567889999998887754 3 466667787764311 112 22223332 357999999999999888887
Q ss_pred -HHhcCeEEEecCceecccc
Q 005581 480 -AMAAGTILAENLTLTGSIG 498 (690)
Q Consensus 480 -A~aaD~I~A~p~t~~GSIG 498 (690)
++.||+|+|.|++.+|.-|
T Consensus 226 ~a~l~Diiiae~~A~IgfAG 245 (296)
T CHL00174 226 FGMLGDIIIAEPNAYIAFAG 245 (296)
T ss_pred HHHcccEEEEeCCeEEEeeC
Confidence 5569999999999876433
No 253
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.26 E-value=0.008 Score=63.94 Aligned_cols=87 Identities=24% Similarity=0.292 Sum_probs=61.2
Q ss_pred CcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHhc-CCCCEEEEECccccHHHHH-HH
Q 005581 410 SSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLLS-ESKPVIASMSDVAASGGYY-MA 480 (690)
Q Consensus 410 ~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l~-~~KPVVa~v~g~AaSGGy~-iA 480 (690)
.+....+.+.+.++.+.+. ++ .||.-.+|+|..... ...+...+..++ ...|.|+.+.|.++||+.+ .+
T Consensus 136 mg~~~geKi~r~~e~A~~~-~l-PlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a 213 (285)
T TIGR00515 136 MGSVVGEKFVRAIEKALED-NC-PLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFA 213 (285)
T ss_pred ccHHHHHHHHHHHHHHHHc-CC-CEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHH
Confidence 3446788888888888754 44 455668888864321 112233444454 4899999999999999766 45
Q ss_pred HhcCeEEEecCceecccc
Q 005581 481 MAAGTILAENLTLTGSIG 498 (690)
Q Consensus 481 ~aaD~I~A~p~t~~GSIG 498 (690)
+.+|+++|.|++.+|.-|
T Consensus 214 ~~~D~iia~p~A~ig~aG 231 (285)
T TIGR00515 214 MLGDLNIAEPKALIGFAG 231 (285)
T ss_pred hCCCEEEEECCeEEEcCC
Confidence 799999999998877544
No 254
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.20 E-value=0.0018 Score=69.47 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=62.2
Q ss_pred chHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhc
Q 005581 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 412 ~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aa 483 (690)
...++...+.++.+.+-. .-||--+|+||..+.. ...+.+.+..+ ....|+|+.+-|-|.|||.+....|
T Consensus 134 p~g~rKa~R~m~lA~~f~--iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~a 211 (316)
T TIGR00513 134 PEGYRKALRLMKMAERFK--MPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVG 211 (316)
T ss_pred HHHHHHHHHHHHHHHHcC--CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccC
Confidence 456777777777766543 3577789999976321 23455555544 3389999999999999999988889
Q ss_pred CeEEEecCceecccc
Q 005581 484 GTILAENLTLTGSIG 498 (690)
Q Consensus 484 D~I~A~p~t~~GSIG 498 (690)
|+++|.|++.++.++
T Consensus 212 D~v~m~~~a~~sVis 226 (316)
T TIGR00513 212 DKVNMLEYSTYSVIS 226 (316)
T ss_pred CEEEEecCceEEecC
Confidence 999999998766443
No 255
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=97.14 E-value=0.0024 Score=68.56 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=62.0
Q ss_pred chHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-------hhHHHHHHHHh-cCCCCEEEEECccccHHHHHHHHhc
Q 005581 412 GIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-------SDLMWREIRLL-SESKPVIASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 412 ~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-------s~~i~~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~aa 483 (690)
...++...+.++.+.+- ++ -||--+|+||..+.. ...+.+.+..+ ....|+|+.+-|-|.|||.+....|
T Consensus 134 peg~rKa~R~m~lA~~f-~l-PIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~a 211 (319)
T PRK05724 134 PEGYRKALRLMKMAEKF-GL-PIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVG 211 (319)
T ss_pred HHHHHHHHHHHHHHHHc-CC-CEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhcc
Confidence 34567777777666554 33 577778999976421 23455555554 3489999999999999999988899
Q ss_pred CeEEEecCceecccc
Q 005581 484 GTILAENLTLTGSIG 498 (690)
Q Consensus 484 D~I~A~p~t~~GSIG 498 (690)
|+++|.|++.++.++
T Consensus 212 D~v~m~~~A~~svis 226 (319)
T PRK05724 212 DRVLMLEYSTYSVIS 226 (319)
T ss_pred CeeeeecCceEeecC
Confidence 999999999866443
No 256
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=97.05 E-value=0.0052 Score=63.86 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCC-------CCHHHHHHHHHHHHHHhhcCCeEEEEecCcchh--hhHHhhcc
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLS-------CGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEK--EYYLACAC 232 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~G-------g~~~~~~eI~~aI~~~r~sgKpVvAy~~~aas~--gY~LAsaa 232 (690)
..-..|++++++|.++. .-.|++-. |.| -++.+.-.+..+|.++++.+.|.|++...-..| .--.|+..
T Consensus 141 VvGeki~ra~E~A~e~k-~P~v~f~a-SGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lG 218 (294)
T COG0777 141 VVGEKITRAIERAIEDK-LPLVLFSA-SGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG 218 (294)
T ss_pred HHHHHHHHHHHHHHHhC-CCEEEEec-CcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccchhHhHHhcc
Confidence 44678999999998874 54554432 222 245667788899999999999999999743333 44567889
Q ss_pred CeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005581 233 EELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSST 312 (690)
Q Consensus 233 D~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~ 312 (690)
|.+++.|.+.+|+.|.... |+
T Consensus 219 Di~iAEP~AlIGFAGpRVI---------------------------EQ-------------------------------- 239 (294)
T COG0777 219 DIIIAEPGALIGFAGPRVI---------------------------EQ-------------------------------- 239 (294)
T ss_pred CeeecCcccccccCcchhh---------------------------hh--------------------------------
Confidence 9999999999999988221 11
Q ss_pred cCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCC
Q 005581 313 KGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (690)
Q Consensus 313 Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~ 359 (690)
.+++-+-.+.-++|..+++|+||.|....|+.+.+...+.+
T Consensus 240 ------Tire~LPegfQ~aEfLlehG~iD~iv~R~elr~tla~ll~~ 280 (294)
T COG0777 240 ------TIREKLPEGFQTAEFLLEHGMIDMIVHRDELRTTLASLLAK 280 (294)
T ss_pred ------hhcccCCcchhhHHHHHHcCCceeeecHHHHHHHHHHHHHH
Confidence 11111112334678889999999999999998888877654
No 257
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=97.05 E-value=0.013 Score=63.15 Aligned_cols=85 Identities=12% Similarity=-0.045 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHH-------HHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccC
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~-------~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD 233 (690)
.++....+.++.|.... +- ||--+|+||..+. +++.|.+.+..+.....|+|+.+- -++++|.|..+.||
T Consensus 138 ~g~rKa~Rlm~lA~~f~-lP-IItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD 215 (322)
T CHL00198 138 GGYRKALRLMKHANKFG-LP-ILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGD 215 (322)
T ss_pred HHHHHHHHHHHHHHHcC-CC-EEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCC
Confidence 45667777777776553 32 4555799986532 234466666656566799999885 56677767667899
Q ss_pred eeEecCCCeEEEecc
Q 005581 234 ELYAPPSAYFSLYGL 248 (690)
Q Consensus 234 ~I~a~p~~~vg~~Gv 248 (690)
.++|-|.+.++.++.
T Consensus 216 ~V~m~e~a~~sVisP 230 (322)
T CHL00198 216 SIMMLEYAVYTVATP 230 (322)
T ss_pred eEEEeCCeEEEecCH
Confidence 999999998877755
No 258
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=96.80 E-value=0.018 Score=60.39 Aligned_cols=85 Identities=11% Similarity=0.062 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHH-------HHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccC
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~-------~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD 233 (690)
.++....+.++.|.+.. += ||--+|+||..... .+.+.+.+..+.....|+|+.+- .++++|+|....||
T Consensus 82 ~g~rKa~R~~~lA~~~~-lP-vV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D 159 (256)
T PRK12319 82 EGYRKALRLMKQAEKFG-RP-VVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVAD 159 (256)
T ss_pred HHHHHHHHHHHHHHHcC-CC-EEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCC
Confidence 35677788888886553 33 44457999865422 23455556665556799999885 67888888888999
Q ss_pred eeEecCCCeEEEecc
Q 005581 234 ELYAPPSAYFSLYGL 248 (690)
Q Consensus 234 ~I~a~p~~~vg~~Gv 248 (690)
.++|-|++.++.++.
T Consensus 160 ~v~m~~~a~~~v~~p 174 (256)
T PRK12319 160 QVWMLENTMYAVLSP 174 (256)
T ss_pred EEEEecCceEEEcCH
Confidence 999999999888766
No 259
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.74 E-value=0.018 Score=59.82 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHH-hCCCceEEEEEccCCCcchhh-------hhHHH---HHHHHh-cCCCCEEEEECccccHHHHHHHH
Q 005581 414 IGEQLIEKIRKVR-ESKRYKAAIIRIDSPGGDALA-------SDLMW---REIRLL-SESKPVIASMSDVAASGGYYMAM 481 (690)
Q Consensus 414 ~~~~l~~~l~~a~-~D~~VkaVVLrinSpGG~~~a-------s~~i~---~~I~~l-~~~KPVVa~v~g~AaSGGy~iA~ 481 (690)
......+.+.... ++.+ ..||.-+|+||-.... ...+. +.+... ..+.|+|+.+-|-+.||||+-..
T Consensus 49 ~~~k~A~~v~~~~d~~f~-~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg 127 (238)
T TIGR03134 49 EALALAQAVLDVIEADDK-RPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHG 127 (238)
T ss_pred HHHHHHHHHHHHHHhcCC-CCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHc
Confidence 4556666677753 3344 4688889999865422 12223 233333 23799999999999999988776
Q ss_pred -hcCeEEEecCceecccc
Q 005581 482 -AAGTILAENLTLTGSIG 498 (690)
Q Consensus 482 -aaD~I~A~p~t~~GSIG 498 (690)
.+|.+||-|++.++.++
T Consensus 128 ~~ad~v~Alp~A~i~vm~ 145 (238)
T TIGR03134 128 LQADRIIALPGAMVHVMD 145 (238)
T ss_pred cCcCeEEEcCCcEEEecC
Confidence 38999999999876543
No 260
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.73 E-value=0.018 Score=67.32 Aligned_cols=85 Identities=14% Similarity=0.016 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCH-------HHHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccC
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~-------~~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD 233 (690)
.+++-.++.++.|.... += ||--+|+||..+ ++++.|.+.+..+.....|+|+.+- -|++||.|..+.||
T Consensus 226 eGyRKAlRlmkLAekfg-LP-IVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD 303 (762)
T PLN03229 226 HGYRKALRMMYYADHHG-FP-IVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCAN 303 (762)
T ss_pred HHHHHHHHHHHHHHHcC-CC-EEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCC
Confidence 34667777777776553 32 455589998654 2345566666666556799999885 57777777778899
Q ss_pred eeEecCCCeEEEecc
Q 005581 234 ELYAPPSAYFSLYGL 248 (690)
Q Consensus 234 ~I~a~p~~~vg~~Gv 248 (690)
.++|-|.+.++.+|.
T Consensus 304 ~VlMle~A~~sVisP 318 (762)
T PLN03229 304 KLLMLENAVFYVASP 318 (762)
T ss_pred EEEEecCCeEEecCH
Confidence 999999998887766
No 261
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.68 E-value=0.036 Score=59.65 Aligned_cols=85 Identities=14% Similarity=0.040 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHH-------HHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccC
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~-------~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD 233 (690)
.++...++.++.|..-. +- ||--+|+||..+.. ++.+.+.+..+.....|+|+.+- -++++|.|....||
T Consensus 135 ~g~rKa~R~m~lA~~f~-iP-vVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD 212 (316)
T TIGR00513 135 EGYRKALRLMKMAERFK-MP-IITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGD 212 (316)
T ss_pred HHHHHHHHHHHHHHHcC-CC-EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCC
Confidence 45667777777776553 32 45558999865332 34455666656556799999885 56677777667899
Q ss_pred eeEecCCCeEEEecc
Q 005581 234 ELYAPPSAYFSLYGL 248 (690)
Q Consensus 234 ~I~a~p~~~vg~~Gv 248 (690)
.++|-|++.++.++.
T Consensus 213 ~v~m~~~a~~sVisP 227 (316)
T TIGR00513 213 KVNMLEYSTYSVISP 227 (316)
T ss_pred EEEEecCceEEecCH
Confidence 999999999988766
No 262
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.67 E-value=0.032 Score=64.04 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=63.6
Q ss_pred CCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCc--chh-------hhhHHHHHHHHhcCCCCEEEEECccccHHHHHH
Q 005581 409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGG--DAL-------ASDLMWREIRLLSESKPVIASMSDVAASGGYYM 479 (690)
Q Consensus 409 ~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG--~~~-------as~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~i 479 (690)
+.+....+.+.++++.|.+. .+- +|.-.+|.|+ ... +...+...+.++....|+|+.+.|.|++||-|+
T Consensus 72 s~g~~~~~Ki~ra~~~A~~~-~~P-~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg~A~~ 149 (493)
T PF01039_consen 72 SVGEVHGEKIARAIELALEN-GLP-LVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGGGAYL 149 (493)
T ss_dssp TBSHHHHHHHHHHHHHHHHH-TEE-EEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGGGGHH
T ss_pred CCCcccceeeehHHHHHHHc-CCC-cEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccchhhc
Confidence 34557788899999888876 343 4555788888 221 233455666666669999999999999999999
Q ss_pred HHhcCeEEEecC-ceec
Q 005581 480 AMAAGTILAENL-TLTG 495 (690)
Q Consensus 480 A~aaD~I~A~p~-t~~G 495 (690)
+..||++++.+. +.++
T Consensus 150 ~~~~d~~i~~~~~a~i~ 166 (493)
T PF01039_consen 150 AALSDFVIMVKGTARIF 166 (493)
T ss_dssp HHHSSEEEEETTTCEEE
T ss_pred ccccCccccCccceEEE
Confidence 999999999997 6544
No 263
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=96.63 E-value=0.029 Score=59.73 Aligned_cols=131 Identities=17% Similarity=0.143 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCC-------HHHHHHHHHHHHHHhhcCCeEEEEec--CcchhhhHHhhcc
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-------WGKVEEIRRHVVDFKKSGKFIIGYVP--VCGEKEYYLACAC 232 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~-------~~~~~eI~~aI~~~r~sgKpVvAy~~--~aas~gY~LAsaa 232 (690)
...+.+.+.++.|.+. ++- ||.-.+|+|.- +.+.-.+..++.++++.+.|.|+.+. .++.++|..++.+
T Consensus 139 ~~geKi~r~~e~A~~~-~lP-lV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~ 216 (285)
T TIGR00515 139 VVGEKFVRAIEKALED-NCP-LIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVSASFAMLG 216 (285)
T ss_pred HHHHHHHHHHHHHHHc-CCC-EEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCC
Confidence 3567788888888754 454 44447887743 22223345577788778999999886 3444467778899
Q ss_pred CeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005581 233 EELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSST 312 (690)
Q Consensus 233 D~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~ 312 (690)
|.++|.|++.+|+.|... + .+.
T Consensus 217 D~iia~p~A~ig~aGprV--------i--------------------------------------------------e~t 238 (285)
T TIGR00515 217 DLNIAEPKALIGFAGPRV--------I--------------------------------------------------EQT 238 (285)
T ss_pred CEEEEECCeEEEcCCHHH--------H--------------------------------------------------HHH
Confidence 999999999999888710 0 000
Q ss_pred cCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCC
Q 005581 313 KGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (690)
Q Consensus 313 Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~ 359 (690)
.+ +.+....-+++-+.+.|+||.|....|+.+.|.+.+..
T Consensus 239 i~-------e~lpe~~q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~ 278 (285)
T TIGR00515 239 VR-------EKLPEGFQTSEFLLEHGAIDMIVHRPEMKKTLASLLAK 278 (285)
T ss_pred hc-------CccchhcCCHHHHHhCCCCcEEECcHHHHHHHHHHHHH
Confidence 00 00111233567788899999999999999988887653
No 264
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=96.61 E-value=0.22 Score=56.94 Aligned_cols=84 Identities=17% Similarity=0.081 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCC----HHHH---HHHHHHHHHHhhcC-CeEEEEec-CcchhhhHHhhc
Q 005581 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCG----WGKV---EEIRRHVVDFKKSG-KFIIGYVP-VCGEKEYYLACA 231 (690)
Q Consensus 161 ~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~----~~~~---~eI~~aI~~~r~sg-KpVvAy~~-~aas~gY~LAsa 231 (690)
......+++..+.|.++. .-.|.| .||.|+. +... -+|...-. +.|+ +|.|+.+- .|+.+|-|+-..
T Consensus 109 ~~~~~Ki~r~~~~A~~~g-~P~i~l-~dsgGari~~~v~~l~g~g~iF~~~a--~~Sg~IPqIsvv~G~c~gGgaY~pal 184 (526)
T COG4799 109 EMTAKKILRAQELAIENG-LPVIGL-NDSGGARIQEGVPSLAGYGRIFYRNA--RASGVIPQISVVMGPCAGGGAYSPAL 184 (526)
T ss_pred ccccchHHHHHHHHHHcC-CCEEEE-EcccccccccCccccccchHHHHHHH--HhccCCCEEEEEEecCcccccccccc
Confidence 456778999999998764 333333 3444422 2222 12221111 2344 79999887 688888888889
Q ss_pred cCeeEecCC-CeEEEecc
Q 005581 232 CEELYAPPS-AYFSLYGL 248 (690)
Q Consensus 232 aD~I~a~p~-~~vg~~Gv 248 (690)
||.++|-.. +.+.+.|.
T Consensus 185 ~D~~imv~~~~~mfltGP 202 (526)
T COG4799 185 TDFVIMVRDQSYMFLTGP 202 (526)
T ss_pred cceEEEEcCCccEEeeCH
Confidence 999999988 67777776
No 265
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=96.59 E-value=0.022 Score=62.94 Aligned_cols=85 Identities=12% Similarity=-0.031 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHH-------HHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccC
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~-------~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD 233 (690)
.++...++.++.|.... += ||--+|+||.... +++.|.+.+..+-..+.|+|+.+- -++|+|-+....||
T Consensus 205 eGyRKAlR~mklAekf~-lP-IVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD 282 (431)
T PLN03230 205 NGYRKALRFMRHAEKFG-FP-ILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGN 282 (431)
T ss_pred HHHHHHHHHHHHHHHcC-CC-EEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCC
Confidence 35667777777776553 32 4555799985432 234566667666667899999885 44455444445789
Q ss_pred eeEecCCCeEEEecc
Q 005581 234 ELYAPPSAYFSLYGL 248 (690)
Q Consensus 234 ~I~a~p~~~vg~~Gv 248 (690)
.++|-|++.++.++.
T Consensus 283 ~VlMle~A~ysVisP 297 (431)
T PLN03230 283 RMLMMENAVYYVASP 297 (431)
T ss_pred EEEEecCCEEEecCH
Confidence 999999998887766
No 266
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=96.57 E-value=0.024 Score=61.11 Aligned_cols=85 Identities=14% Similarity=0.028 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHH-------HHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhccC
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACACE 233 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~-------~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaaD 233 (690)
.+++...+.++.|..- ++- ||--+|+||..+. +++.+.+.+..+.....|+|+.+- -+.++|.|....||
T Consensus 135 eg~rKa~R~m~lA~~f-~lP-IVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD 212 (319)
T PRK05724 135 EGYRKALRLMKMAEKF-GLP-IITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGD 212 (319)
T ss_pred HHHHHHHHHHHHHHHc-CCC-EEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccC
Confidence 3566677777777654 333 4555899986543 234566667767667899999885 56677777767799
Q ss_pred eeEecCCCeEEEecc
Q 005581 234 ELYAPPSAYFSLYGL 248 (690)
Q Consensus 234 ~I~a~p~~~vg~~Gv 248 (690)
.++|-|++.++.++.
T Consensus 213 ~v~m~~~A~~svisP 227 (319)
T PRK05724 213 RVLMLEYSTYSVISP 227 (319)
T ss_pred eeeeecCceEeecCH
Confidence 999999999888766
No 267
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=96.38 E-value=0.057 Score=57.74 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCH-------HHHHHHHHHHHHHhhcCCeEEEEec--CcchhhhHHhhcc
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP--VCGEKEYYLACAC 232 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~-------~~~~eI~~aI~~~r~sgKpVvAy~~--~aas~gY~LAsaa 232 (690)
.+.+.+.+.++.|.+. ++--|. -.+|+|.-. .+.-.+..++.++++.+.|.|+.+. .++.++|..++.+
T Consensus 140 ~~~eKi~r~~e~A~~~-~lPlV~-l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~ 217 (292)
T PRK05654 140 VVGEKIVRAVERAIEE-KCPLVI-FSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLG 217 (292)
T ss_pred HHHHHHHHHHHHHHHc-CCCEEE-EEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcC
Confidence 4567788888888765 554444 457777432 1222344577778777899999886 3445567778889
Q ss_pred CeeEecCCCeEEEecc
Q 005581 233 EELYAPPSAYFSLYGL 248 (690)
Q Consensus 233 D~I~a~p~~~vg~~Gv 248 (690)
|.++|.|++.+|+.|.
T Consensus 218 D~iia~p~A~ig~aGp 233 (292)
T PRK05654 218 DIIIAEPKALIGFAGP 233 (292)
T ss_pred CEEEEecCcEEEecCH
Confidence 9999999999999887
No 268
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=96.32 E-value=0.085 Score=56.29 Aligned_cols=131 Identities=16% Similarity=0.214 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCC-------HHHHHHHHHHHHHHh-hcCCeEEEEec--CcchhhhHHhhc
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCG-------WGKVEEIRRHVVDFK-KSGKFIIGYVP--VCGEKEYYLACA 231 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~-------~~~~~eI~~aI~~~r-~sgKpVvAy~~--~aas~gY~LAsa 231 (690)
.....+.++++.|.+. ++- +|+-.+|.|+- +.+.-.+..++..++ ..+.|.|+.+. .++..+|..|+.
T Consensus 152 v~geKi~ra~e~A~~~-rlP-lV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~aas~a~l 229 (296)
T CHL00174 152 VVGEKITRLIEYATNE-SLP-LIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGVTASFGML 229 (296)
T ss_pred HHHHHHHHHHHHHHHc-CCC-EEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHHHHHHHHc
Confidence 4577899999999765 443 45556666532 223334555566654 46789999985 345567778889
Q ss_pred cCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 005581 232 CEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSS 311 (690)
Q Consensus 232 aD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~ 311 (690)
||.|+|.|.+.+|+.|.... +.-+.
T Consensus 230 ~Diiiae~~A~IgfAGPrVI---------------------------e~t~g---------------------------- 254 (296)
T CHL00174 230 GDIIIAEPNAYIAFAGKRVI---------------------------EQTLN---------------------------- 254 (296)
T ss_pred ccEEEEeCCeEEEeeCHHHH---------------------------HHhcC----------------------------
Confidence 99999999999999988211 00000
Q ss_pred hcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCC
Q 005581 312 TKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGV 359 (690)
Q Consensus 312 ~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~ 359 (690)
..+ ..+.-+++-.++.|+||.+....++.+.|.+.+.+
T Consensus 255 -e~l---------pe~fq~ae~l~~~G~vD~iV~r~~lr~~l~~ll~~ 292 (296)
T CHL00174 255 -KTV---------PEGSQAAEYLFDKGLFDLIVPRNLLKGVLSELFQL 292 (296)
T ss_pred -CcC---------CcccccHHHHHhCcCceEEEcHHHHHHHHHHHHHh
Confidence 001 12234677788999999999999998888877654
No 269
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=96.25 E-value=0.036 Score=57.80 Aligned_cols=108 Identities=25% Similarity=0.339 Sum_probs=67.0
Q ss_pred cEEEEEeecccccCCC-----C---CCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcch----hh---hhHHHH
Q 005581 389 QIAVIRASGSISRVRS-----P---LSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDA----LA---SDLMWR 453 (690)
Q Consensus 389 ~IAvI~i~G~I~~~~~-----~---~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~----~a---s~~i~~ 453 (690)
.=|||.-.|.|..-.- . .+.+.+....+.++++++.|.+++ ...|++.. |.|... ++ .-.+.-
T Consensus 109 ~davvtg~g~i~G~pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~a-SGGARMQEg~lSLMQMaktsa 186 (294)
T COG0777 109 DDAVVTGEGTINGLPVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSA-SGGARMQEGILSLMQMAKTSA 186 (294)
T ss_pred CcceEEEeeEECCeEEEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEec-CcchhHhHHHHHHHHHHHHHH
Confidence 3456666666653210 1 122334566899999999999875 55555543 333221 22 222334
Q ss_pred HHHHhc-CCCCEEEEECccccHHH-HHHHHhcCeEEEecCceecccc
Q 005581 454 EIRLLS-ESKPVIASMSDVAASGG-YYMAMAAGTILAENLTLTGSIG 498 (690)
Q Consensus 454 ~I~~l~-~~KPVVa~v~g~AaSGG-y~iA~aaD~I~A~p~t~~GSIG 498 (690)
++.+++ ++.|.|+.+.+...||= ...|+.+|+++|.|.+++|.-|
T Consensus 187 Al~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAG 233 (294)
T COG0777 187 ALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAG 233 (294)
T ss_pred HHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCc
Confidence 566664 48999999987775442 2467788999999999988655
No 270
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=96.21 E-value=0.096 Score=55.46 Aligned_cols=86 Identities=20% Similarity=0.213 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHhhcCCCc---eEEEEEcCCCCCCHHH-------HHHHHHHHHHHhhcCCeEEEEec-C--cchhhhHH
Q 005581 162 LSLPQICENFVKAAYDPRI---VGIYLHIEPLSCGWGK-------VEEIRRHVVDFKKSGKFIIGYVP-V--CGEKEYYL 228 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~I---kgVvL~i~s~Gg~~~~-------~~eI~~aI~~~r~sgKpVvAy~~-~--aas~gY~L 228 (690)
.....+...++.|.+|.+- --||+-++|.|+-+.. .-++..++.+++.. .|+|+.+. . |..++.|+
T Consensus 78 ~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~-vP~Isvv~Gp~gc~GG~a~~ 156 (274)
T TIGR03133 78 VHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAA-VPVIGVIGGRVGCFGGMGIA 156 (274)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCC-CCEEEEEeCCCCcchHHHHH
Confidence 4567899999999874331 1477778888865432 23566667777655 89999885 3 67777799
Q ss_pred hhccCeeEecCCCeEEEecc
Q 005581 229 ACACEELYAPPSAYFSLYGL 248 (690)
Q Consensus 229 AsaaD~I~a~p~~~vg~~Gv 248 (690)
++.||.++|.|.+.+++.|.
T Consensus 157 a~l~D~vim~~~a~i~~aGP 176 (274)
T TIGR03133 157 AGLCSYLIMTEEGRLGLSGP 176 (274)
T ss_pred HhcCCEEEEeCCcEEeccCH
Confidence 99999999999999999887
No 271
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=96.12 E-value=0.043 Score=56.98 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhh-cCCCceEEEEEcCCCCCCHHHHHH-------HH---HHHHHHhhcCCeEEEEec-CcchhhhHHhh-
Q 005581 164 LPQICENFVKAA-YDPRIVGIYLHIEPLSCGWGKVEE-------IR---RHVVDFKKSGKFIIGYVP-VCGEKEYYLAC- 230 (690)
Q Consensus 164 ~~~i~~~L~~Aa-~D~~IkgVvL~i~s~Gg~~~~~~e-------I~---~aI~~~r~sgKpVvAy~~-~aas~gY~LAs- 230 (690)
.......+.... .+.++ -||.-+|+||-.+..-+| +. .++...+..+.|+|+.+- .+.|+||+.-.
T Consensus 50 ~~k~A~~v~~~~d~~f~~-PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~ 128 (238)
T TIGR03134 50 ALALAQAVLDVIEADDKR-PIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGL 128 (238)
T ss_pred HHHHHHHHHHHHHhcCCC-CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHcc
Confidence 345666666643 33554 466678999865533322 33 445555566799999986 55566555444
Q ss_pred ccCeeEecCCCeEEEecc
Q 005581 231 ACEELYAPPSAYFSLYGL 248 (690)
Q Consensus 231 aaD~I~a~p~~~vg~~Gv 248 (690)
.+|.+||-|++.++..+.
T Consensus 129 ~ad~v~Alp~A~i~vm~~ 146 (238)
T TIGR03134 129 QADRIIALPGAMVHVMDL 146 (238)
T ss_pred CcCeEEEcCCcEEEecCH
Confidence 599999999999987765
No 272
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.71 E-value=0.29 Score=55.52 Aligned_cols=112 Identities=15% Similarity=0.130 Sum_probs=66.8
Q ss_pred cCCeEEEEEEceeeccc----ccc---ccC-----CCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHH
Q 005581 137 RKGSVLTMKLRGQIADQ----LKS---RFS-----SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHV 204 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~----~~~---~~~-----~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI 204 (690)
..+.|.+|.=+|.+.-. ... .|+ +.-.--++.+.|+...+||+.++|+|.+.+..- ...+.++.
T Consensus 149 ~~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d~~~~d~l~~l~~D~~t~~I~ly~E~~~~----~~~f~~aa 224 (447)
T TIGR02717 149 KKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIKD----GRKFLKTA 224 (447)
T ss_pred CCCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchhhCCHHHHHHHHhhCCCCCEEEEEecCCCC----HHHHHHHH
Confidence 35668888777754421 110 121 111122577888888999999999999998652 24455666
Q ss_pred HHHhhcCCeEEEEecCcchhh-hHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCcee
Q 005581 205 VDFKKSGKFIIGYVPVCGEKE-YYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEP 266 (690)
Q Consensus 205 ~~~r~sgKpVvAy~~~aas~g-Y~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~ 266 (690)
++... +||||++-.+-...| --..+++ .+..| ....|..+|++.||-.
T Consensus 225 ~~a~~-~KPVv~~k~Grs~~g~~aa~sHt-------galag------~~~~~~a~~~~~Gv~~ 273 (447)
T TIGR02717 225 REISK-KKPIVVLKSGTSEAGAKAASSHT-------GALAG------SDEAYDAAFKQAGVIR 273 (447)
T ss_pred HHHcC-CCCEEEEecCCChhhhhhhhhcc-------ccccC------hHHHHHHHHHHCCeEE
Confidence 66644 899999986432222 1111211 22222 3345788899999865
No 273
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=95.24 E-value=0.19 Score=57.91 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHH-------HHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhc--
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV-------EEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA-- 231 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~-------~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsa-- 231 (690)
.+.+.+.+.++.|... ++- ||.-+|++|.....- ..+.+.+..+.+...|.|+++- .+.+++|+..+.
T Consensus 334 ~~~~K~~r~i~~a~~~-~lP-lV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~ 411 (512)
T TIGR01117 334 DSSDKIARFIRFCDAF-NIP-IVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKH 411 (512)
T ss_pred HHHHHHHHHHHHHHHc-CCC-EEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhcccc
Confidence 3566677777877544 443 455588988643333 3344455556667899999997 456667666653
Q ss_pred --cCeeEecCCCeEEEecc
Q 005581 232 --CEELYAPPSAYFSLYGL 248 (690)
Q Consensus 232 --aD~I~a~p~~~vg~~Gv 248 (690)
+|.+||-|++.++..|.
T Consensus 412 ~~~d~~~a~p~a~~~v~~p 430 (512)
T TIGR01117 412 LGADQVYAWPTAEIAVMGP 430 (512)
T ss_pred CCCCEEEEcCCCeEeecCH
Confidence 99999999999999887
No 274
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=95.13 E-value=0.11 Score=55.56 Aligned_cols=86 Identities=22% Similarity=0.257 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHhhcCCC---ceEEEEEcCCCCCCHH-------HHHHHHHHHHHHhhcCCeEEEEec-C--cchhhhHH
Q 005581 162 LSLPQICENFVKAAYDPR---IVGIYLHIEPLSCGWG-------KVEEIRRHVVDFKKSGKFIIGYVP-V--CGEKEYYL 228 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~---IkgVvL~i~s~Gg~~~-------~~~eI~~aI~~~r~sgKpVvAy~~-~--aas~gY~L 228 (690)
.+...+...++.|.++.+ ..-+|+-++|.|+-+. +.-++..++.+++.. .|+|+.+. . |..++-|+
T Consensus 87 ~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~ 165 (301)
T PRK07189 87 VHGAKLAGALELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIA 165 (301)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHH
Confidence 457789999999987641 2356777888775432 334666677777665 99999986 3 77777778
Q ss_pred hhccCeeEecCCCeEEEecc
Q 005581 229 ACACEELYAPPSAYFSLYGL 248 (690)
Q Consensus 229 AsaaD~I~a~p~~~vg~~Gv 248 (690)
++.||.|+|.+.+.+++.|.
T Consensus 166 a~l~D~iIm~~~a~iglaGP 185 (301)
T PRK07189 166 AALCSYLIVSEEGRLGLSGP 185 (301)
T ss_pred HhcCCEEEEECCcEEeccCH
Confidence 99999999999999999988
No 275
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=94.57 E-value=0.042 Score=57.73 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEEccCCCcch-------hhhhHHHHHHHHhc-CCCCEEEEECccccHHHHHHHHhcCe
Q 005581 414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDA-------LASDLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGT 485 (690)
Q Consensus 414 ~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~-------~as~~i~~~I~~l~-~~KPVVa~v~g~AaSGGy~iA~aaD~ 485 (690)
.+..-++.++.|++= -.-||.-||+||... -.++.|.+.+.++. -+.||||.|=|-.-|||..-...||.
T Consensus 135 GyRKAlRlm~~AekF--~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~ 212 (317)
T COG0825 135 GYRKALRLMKLAEKF--GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADR 212 (317)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHH
Confidence 344444444444322 245888899998643 24788888887764 39999999999999999998889999
Q ss_pred EEEecCcee
Q 005581 486 ILAENLTLT 494 (690)
Q Consensus 486 I~A~p~t~~ 494 (690)
++|-.+++.
T Consensus 213 V~mle~s~y 221 (317)
T COG0825 213 VLMLENSTY 221 (317)
T ss_pred HHHHHhcee
Confidence 999998863
No 276
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=94.31 E-value=0.33 Score=56.63 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=61.1
Q ss_pred CCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhh----------hhHHHHHHHHhc-CCCCEEEEECccccHHHH
Q 005581 409 SSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA----------SDLMWREIRLLS-ESKPVIASMSDVAASGGY 477 (690)
Q Consensus 409 ~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a----------s~~i~~~I~~l~-~~KPVVa~v~g~AaSGGy 477 (690)
+.+....+.+.+.++.|.+.. + -||.-++|+|+.... ...|+..+.++. ...|.|+.+-|.|++||.
T Consensus 144 s~g~~~~~Ki~r~~elA~~~~-l-PlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~gGgA 221 (569)
T PLN02820 144 TYYPITVKKHLRAQEIAAQCR-L-PCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTAGGA 221 (569)
T ss_pred CCCHHHHHHHHHHHHHHHHcC-C-CEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHH
Confidence 344567888998888887654 3 577778998876521 123444444444 369999999999999999
Q ss_pred HHHHhcCeEEEec-Cceec
Q 005581 478 YMAMAAGTILAEN-LTLTG 495 (690)
Q Consensus 478 ~iA~aaD~I~A~p-~t~~G 495 (690)
|+...||.+++.. ++.++
T Consensus 222 y~~a~~D~vim~~~~a~i~ 240 (569)
T PLN02820 222 YVPAMADESVIVKGNGTIF 240 (569)
T ss_pred HHHHhCCceEEecCCcEEE
Confidence 9999999988775 55444
No 277
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=93.92 E-value=0.12 Score=54.51 Aligned_cols=84 Identities=14% Similarity=0.041 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCH-------HHHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhcc
Q 005581 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-------GKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACAC 232 (690)
Q Consensus 161 ~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~-------~~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsaa 232 (690)
.-+++.-++.++.|..=.. =|+.-||++|... .+++.|.+-+.++-....|||+.+= -.+|||-+--..|
T Consensus 133 PeGyRKAlRlm~~AekF~l--PiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~va 210 (317)
T COG0825 133 PEGYRKALRLMKLAEKFGL--PIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVA 210 (317)
T ss_pred chHHHHHHHHHHHHHHhCC--CEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHH
Confidence 3456666666666654322 3677789988432 5667899999998888899999875 5667777777789
Q ss_pred CeeEecCCCeEEEe
Q 005581 233 EELYAPPSAYFSLY 246 (690)
Q Consensus 233 D~I~a~p~~~vg~~ 246 (690)
|+|+|-..+....+
T Consensus 211 d~V~mle~s~ySVi 224 (317)
T COG0825 211 DRVLMLENSTYSVI 224 (317)
T ss_pred HHHHHHHhceeeec
Confidence 99999998877655
No 278
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=93.38 E-value=0.82 Score=49.69 Aligned_cols=167 Identities=14% Similarity=0.024 Sum_probs=99.3
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-----CCCCHHHHHHHH-----------
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-----LSCGWGKVEEIR----------- 201 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-----~Gg~~~~~~eI~----------- 201 (690)
++...+|.|+.|=. -+..+.-+...+...|.+-..||.++.|||.-++ .||++..+.|+.
T Consensus 45 ~~~~r~itLNRPKa----LNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~f 120 (401)
T KOG1684|consen 45 KGCARVITLNRPKA----LNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKF 120 (401)
T ss_pred CCceeEEEecCchh----hccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHH
Confidence 44566777777621 1111223345677889999999999999999885 378866553321
Q ss_pred -----HHHHHHhhcCCeEEEEecC-cchhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeecccc
Q 005581 202 -----RHVVDFKKSGKFIIGYVPV-CGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYK 275 (690)
Q Consensus 202 -----~aI~~~r~sgKpVvAy~~~-aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yK 275 (690)
..+..+-.-.||.||.+++ -.++|.-|+...-..++...+.+..... -+|.-|
T Consensus 121 F~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt------------~IGlfP--------- 179 (401)
T KOG1684|consen 121 FTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPET------------GIGLFP--------- 179 (401)
T ss_pred HHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceeccccc------------cccccc---------
Confidence 1111111235999999994 4466777877776666666655544433 222222
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHH
Q 005581 276 SAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKE 355 (690)
Q Consensus 276 sa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~ 355 (690)
++|..|..... +. ++-.+ --++|..+++.+|+..||.......+++ ..|.+
T Consensus 180 DVG~Sy~lsrl-pg---~lg~Y------------------------LgLTG~rl~GaD~~~~GlATHyv~S~~l-~~Lee 230 (401)
T KOG1684|consen 180 DVGASYFLSRL-PG---YLGLY------------------------LGLTGQRLSGADALRCGLATHYVPSEKL-PSLEE 230 (401)
T ss_pred CccceeehhhC-cc---HHHHh------------------------hhhccceecchHHHHhcchhhccchhhh-hHHHH
Confidence 34444421000 00 00000 0245788899999999999999876664 55666
Q ss_pred HhC
Q 005581 356 RLG 358 (690)
Q Consensus 356 ~~g 358 (690)
+++
T Consensus 231 ~L~ 233 (401)
T KOG1684|consen 231 RLL 233 (401)
T ss_pred HHh
Confidence 665
No 279
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=91.62 E-value=0.22 Score=48.28 Aligned_cols=71 Identities=18% Similarity=0.110 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEEEccCCCcc-hhhhhHHHHHHHHhc---CCCCEEEEECccccH-----HHHHHHHhc
Q 005581 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGD-ALASDLMWREIRLLS---ESKPVIASMSDVAAS-----GGYYMAMAA 483 (690)
Q Consensus 413 ~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~-~~as~~i~~~I~~l~---~~KPVVa~v~g~AaS-----GGy~iA~aa 483 (690)
|..+...+.|+...+||++++|++.+--..|. ..-...+.++++..+ .+||||+++.|..+- ++.-+.-.+
T Consensus 56 id~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~~~~L~~~ 135 (153)
T PF00549_consen 56 IDPSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQAGALEDA 135 (153)
T ss_dssp T-SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHHHHHHHhC
Confidence 44678889999999999999999998754232 233445566666554 579999999998887 555544433
No 280
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=91.55 E-value=0.7 Score=52.95 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=55.8
Q ss_pred CcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcch-------hhhhHHHHHHHHhcCCCCEEEEECccccHHHHHHHHh
Q 005581 410 SSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDA-------LASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMA 482 (690)
Q Consensus 410 ~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~-------~as~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~a 482 (690)
......+.+++..+.|.++.- - +|.-.+|.|+.. .+.-.|+..-.++....|.|+.|-|.|++||.|+-..
T Consensus 107 ~~~~~~~Ki~r~~~~A~~~g~-P-~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY~pal 184 (526)
T COG4799 107 LGEMTAKKILRAQELAIENGL-P-VIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAYSPAL 184 (526)
T ss_pred ccccccchHHHHHHHHHHcCC-C-EEEEEcccccccccCccccccchHHHHHHHHhccCCCEEEEEEecCcccccccccc
Confidence 344567888888887776532 2 333345655432 1223344333334446999999999999999999999
Q ss_pred cCeEEEecCc
Q 005581 483 AGTILAENLT 492 (690)
Q Consensus 483 aD~I~A~p~t 492 (690)
||++||...+
T Consensus 185 ~D~~imv~~~ 194 (526)
T COG4799 185 TDFVIMVRDQ 194 (526)
T ss_pred cceEEEEcCC
Confidence 9999999985
No 281
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=90.43 E-value=0.59 Score=44.55 Aligned_cols=55 Identities=13% Similarity=0.273 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECccccHH
Q 005581 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASG 475 (690)
Q Consensus 417 ~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~AaSG 475 (690)
.+.+.|+.+.+||++|+|++.+++-+- .+...+.+++....||||+...|....|
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Grt~~g 95 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGRTEAG 95 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE-------
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCCchhh
Confidence 355667788889999999999986432 3667777888766699999999875544
No 282
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=89.04 E-value=7.6 Score=39.41 Aligned_cols=93 Identities=19% Similarity=0.149 Sum_probs=62.3
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEE-EEccCCCcchhhhhHHHHHHHHhcCCCCEE
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAI-IRIDSPGGDALASDLMWREIRLLSESKPVI 465 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVV-LrinSpGG~~~as~~i~~~I~~l~~~KPVV 465 (690)
.++..-|.+++++.+.. ....+-+.++ .+..-... +..|||||++.-.-.+.+.|++. +.-+.
T Consensus 73 dgr~l~VvVse~~a~~d----------a~sal~~lir----~~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~--gfdt~ 136 (245)
T COG3904 73 DGRQLPVVVSEPGANVD----------AASALGRLIR----KAGLYIATGVTLNSPGGSVAKACSMGKLIRED--GFDTA 136 (245)
T ss_pred cCceeeEEEcCCCCCcc----------HHHHHHHHHh----ccCceeEEEEEecCCCCcHHHHHhhhhhhhhc--ccCcc
Confidence 35667777888776421 1122333333 33333333 67899999998777777778765 55666
Q ss_pred EEECccccHHHHHHHHhcCeEEEecCceec
Q 005581 466 ASMSDVAASGGYYMAMAAGTILAENLTLTG 495 (690)
Q Consensus 466 a~v~g~AaSGGy~iA~aaD~I~A~p~t~~G 495 (690)
+.-..+|+|..-++-+++=.+++.+.+.+|
T Consensus 137 v~s~A~CasaCpl~fagGvrRvve~~ayiG 166 (245)
T COG3904 137 VDSGAMCASACPLMFAGGVRRVVEDFAYIG 166 (245)
T ss_pred ccchhhhhccchhhhhcceeeeecccceee
Confidence 666778999888888888889999866544
No 283
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=88.12 E-value=3.8 Score=42.41 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=51.1
Q ss_pred HHHHHHHHHhCCCceEEEEEccCCCcchhhhhH----------HHHHHHHh-cCCCCEEEEECccccHHHHH-HHHhcCe
Q 005581 418 LIEKIRKVRESKRYKAAIIRIDSPGGDALASDL----------MWREIRLL-SESKPVIASMSDVAASGGYY-MAMAAGT 485 (690)
Q Consensus 418 l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~----------i~~~I~~l-~~~KPVVa~v~g~AaSGGy~-iA~aaD~ 485 (690)
+.+.+.+.-++..-+.||+-+|+||--..--|+ ..+.+... ..+-|||+.+-|.|+||||. -.+.||.
T Consensus 51 lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~r 130 (234)
T PF06833_consen 51 LAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANR 130 (234)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcc
Confidence 333444444556668999999999753322222 12222222 34999999999999999986 4678899
Q ss_pred EEEecCce
Q 005581 486 ILAENLTL 493 (690)
Q Consensus 486 I~A~p~t~ 493 (690)
+||-|.+.
T Consensus 131 l~AL~ga~ 138 (234)
T PF06833_consen 131 LIALPGAM 138 (234)
T ss_pred hhcCCCCe
Confidence 99999554
No 284
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=87.99 E-value=0.62 Score=49.21 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=58.5
Q ss_pred CCcEEEEEeecccccCCC------CC------CCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHH
Q 005581 387 GDQIAVIRASGSISRVRS------PL------SLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWRE 454 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~------~~------~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~ 454 (690)
+++|+||.-+|+.+.... .. +..++.+..-.+++.|+.+.+||..++|||-.. .||..- +.-.+.
T Consensus 145 ~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGE-iGG~aE--e~AA~~ 221 (293)
T COG0074 145 PGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGE-IGGPAE--EEAAEY 221 (293)
T ss_pred CCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEec-CCCcHH--HHHHHH
Confidence 589999999999874211 11 122345566788999999999999999999764 455442 222344
Q ss_pred HHHhcCCCCEEEEECcccc
Q 005581 455 IRLLSESKPVIASMSDVAA 473 (690)
Q Consensus 455 I~~l~~~KPVVa~v~g~Aa 473 (690)
|++...+||||+++.|..+
T Consensus 222 i~~~~~~KPVVa~iaG~ta 240 (293)
T COG0074 222 IKANATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHhccCCCEEEEEeccCC
Confidence 5542235999999999998
No 285
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=87.77 E-value=1 Score=47.55 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=59.0
Q ss_pred ccccccCCeEEEEEEceeecccccc-----ccC---------CCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHH
Q 005581 132 PWERVRKGSVLTMKLRGQIADQLKS-----RFS---------SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV 197 (690)
Q Consensus 132 p~~~~~~~~VlvI~l~G~I~~~~~~-----~~~---------~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~ 197 (690)
|..-.+.+.|.++-=+|+++..... .++ +.+.-..++++|+...+||+.++|++- ...||...
T Consensus 139 p~~i~~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmi-GEiGG~aE-- 215 (293)
T COG0074 139 PGNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMI-GEIGGPAE-- 215 (293)
T ss_pred hhhhccCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEE-ecCCCcHH--
Confidence 5555578899999999988754321 111 234556789999999999999999984 44444322
Q ss_pred HHHHHHHHHHhhcCCeEEEEecCc
Q 005581 198 EEIRRHVVDFKKSGKFIIGYVPVC 221 (690)
Q Consensus 198 ~eI~~aI~~~r~sgKpVvAy~~~a 221 (690)
++-++.|++ +.++||||||+...
T Consensus 216 e~AA~~i~~-~~~~KPVVa~iaG~ 238 (293)
T COG0074 216 EEAAEYIKA-NATRKPVVAYIAGR 238 (293)
T ss_pred HHHHHHHHH-hccCCCEEEEEecc
Confidence 334455665 45679999999743
No 286
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=87.20 E-value=1.2 Score=42.50 Aligned_cols=83 Identities=13% Similarity=0.051 Sum_probs=43.5
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEecCcchhhhHHhhccCeeEecC-CCeEE
Q 005581 166 QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPP-SAYFS 244 (690)
Q Consensus 166 ~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~aas~gY~LAsaaD~I~a~p-~~~vg 244 (690)
++.+.|+...+||++++|++.+++.+- .+++.++.++.+.. ||||++-.+-...|- +..+.- .+..
T Consensus 41 ~~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~-KPVv~lk~Grt~~g~-------~aa~sHTgsla- 107 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARR-KPVVVLKAGRTEAGA-------RAAASHTGSLA- 107 (138)
T ss_dssp -HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCC-S-EEEEE---------------------------
T ss_pred CHHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcC-CCEEEEeCCCchhhh-------hhhhccCCccc-
Confidence 467777778889999999999998763 36777788887665 999999874432221 111111 2222
Q ss_pred EeccceeccchhhhhhhcCcee
Q 005581 245 LYGLTVQASFLGGVLEKVGIEP 266 (690)
Q Consensus 245 ~~Gv~~~~~~~k~lLeKlGI~~ 266 (690)
....-+..+|++.||..
T Consensus 108 -----g~~~~~~a~~~~aGv~~ 124 (138)
T PF13607_consen 108 -----GDDAVYDAALRQAGVVR 124 (138)
T ss_dssp -------HHHHHHHHHHCTEEE
T ss_pred -----CcHHHHHHHHHHcCceE
Confidence 23344677888888865
No 287
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=86.83 E-value=13 Score=37.82 Aligned_cols=81 Identities=21% Similarity=0.204 Sum_probs=57.4
Q ss_pred EEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-CCCcchhhhhHHHHHHHH-----------
Q 005581 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL----------- 457 (690)
Q Consensus 390 IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-SpGG~~~as~~i~~~I~~----------- 457 (690)
|+.|++..-.. ....+.+.+.+.+..+ +++++||.+- -+||....+..+...+..
T Consensus 61 igYi~i~~f~~-----------~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~ 127 (224)
T cd06567 61 IGYIRIPSFSA-----------ESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRR 127 (224)
T ss_pred eEEEEECccCC-----------cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecC
Confidence 78888876541 1235677777777766 7999999763 478887666555444321
Q ss_pred -------------hcCCCCEEEEECccccHHHHHHHHhc
Q 005581 458 -------------LSESKPVIASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 458 -------------l~~~KPVVa~v~g~AaSGGy~iA~aa 483 (690)
..-.+||++.+++..+|++=.++.+-
T Consensus 128 ~~~~~~~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~~l 166 (224)
T cd06567 128 GGNETEYVAPGGGSLYDGPLVVLVNEGSASASEIFAGAL 166 (224)
T ss_pred CCceeEEecCCCCcccCCCEEEEECCCCccHHHHHHHHH
Confidence 01269999999999999999888876
No 288
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=86.55 E-value=4.2 Score=41.22 Aligned_cols=97 Identities=10% Similarity=0.042 Sum_probs=65.8
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEE
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGY 217 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy 217 (690)
.+..+.+-+++++.+... ...+-+.++++..+ ....+.+|||||++..+-++.+.|++ .+.-+...
T Consensus 73 dgr~l~VvVse~~a~~da--------~sal~~lir~~G~y---~~t~v~lnSpGGsv~kA~~mgkLiRe---~gfdt~v~ 138 (245)
T COG3904 73 DGRQLPVVVSEPGANVDA--------ASALGRLIRKAGLY---IATGVTLNSPGGSVAKACSMGKLIRE---DGFDTAVD 138 (245)
T ss_pred cCceeeEEEcCCCCCccH--------HHHHHHHHhccCce---eEEEEEecCCCCcHHHHHhhhhhhhh---cccCcccc
Confidence 456777778877665432 12233334444322 22336789999999999999998885 33333333
Q ss_pred e-cCcchhhhHHhhccCeeEecCCCeEEEecc
Q 005581 218 V-PVCGEKEYYLACACEELYAPPSAYFSLYGL 248 (690)
Q Consensus 218 ~-~~aas~gY~LAsaaD~I~a~p~~~vg~~Gv 248 (690)
- ..|+|+--++-+..=..++.+.+++|.+-+
T Consensus 139 s~A~CasaCpl~fagGvrRvve~~ayiGVHq~ 170 (245)
T COG3904 139 SGAMCASACPLMFAGGVRRVVEDFAYIGVHQI 170 (245)
T ss_pred chhhhhccchhhhhcceeeeecccceeeeeec
Confidence 2 378888777777888899999999999966
No 289
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=86.05 E-value=4.2 Score=42.12 Aligned_cols=121 Identities=16% Similarity=0.208 Sum_probs=81.1
Q ss_pred HHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHH----------HHHHHHHHhhcCCeEEEEec-CcchhhhHH-hhccCe
Q 005581 167 ICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEE----------IRRHVVDFKKSGKFIIGYVP-VCGEKEYYL-ACACEE 234 (690)
Q Consensus 167 i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~e----------I~~aI~~~r~sgKpVvAy~~-~aas~gY~L-AsaaD~ 234 (690)
+.+.+.+.-.+..=+.|++-+|+||=.+..-+| +.+++...|..|-|||+.+- .+.||+|+- +..||+
T Consensus 51 lA~~V~~~i~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~r 130 (234)
T PF06833_consen 51 LAKAVLDTIRSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANR 130 (234)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcc
Confidence 344444444444456788889998744444443 44566667888999999987 577777653 457999
Q ss_pred eEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005581 235 LYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKG 314 (690)
Q Consensus 235 I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg 314 (690)
+|+-|.+.+-..+. ..+|+=.+
T Consensus 131 l~AL~ga~i~vM~~----------------------------------------------------------~s~ARVTk 152 (234)
T PF06833_consen 131 LIALPGAMIHVMGK----------------------------------------------------------PSAARVTK 152 (234)
T ss_pred hhcCCCCeeecCCh----------------------------------------------------------HHhHHHhh
Confidence 99998555533322 23344456
Q ss_pred CCHHHHHHHHhcC-c--ccHHHHHhcCCeeEecc
Q 005581 315 KRKEDIERFINDG-V--YKVERLKEEGFITNVLY 345 (690)
Q Consensus 315 ~~~~~v~~~~~~~-v--~~a~eAl~~GLID~i~~ 345 (690)
++.++++++...- + +..+--.++|+++++..
T Consensus 153 ~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 153 RPVEELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred cCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 7888888887653 3 35578889999998866
No 290
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=85.27 E-value=1.6 Score=42.40 Aligned_cols=56 Identities=16% Similarity=0.046 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcCCC-CCCHHHHHHHHHHHHHHh--hcCCeEEEEec
Q 005581 164 LPQICENFVKAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFK--KSGKFIIGYVP 219 (690)
Q Consensus 164 ~~~i~~~L~~Aa~D~~IkgVvL~i~s~-Gg~~~~~~eI~~aI~~~r--~sgKpVvAy~~ 219 (690)
...+.++|+...+||++++|++++--. |..-..+.++.+++++.+ ...||||+++.
T Consensus 58 ~~~~~~~l~~~~~Dp~v~vIlvd~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~ 116 (153)
T PF00549_consen 58 PSTRNEALEIEAADPEVKVILVDIVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVC 116 (153)
T ss_dssp SSHHHHHHHHHHTSTTESEEEEEEESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCccEEEEEeccccCchHHHHHHHHHHHHhccccCCCCcEEEEee
Confidence 457899999999999999999988655 545566677877777764 24689999996
No 291
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=85.26 E-value=3.3 Score=37.36 Aligned_cols=71 Identities=11% Similarity=0.203 Sum_probs=57.5
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCC--------ceEEEEEcCCC-CCCHHHHHHHHHHHHHH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPR--------IVGIYLHIEPL-SCGWGKVEEIRRHVVDF 207 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~--------IkgVvL~i~s~-Gg~~~~~~eI~~aI~~~ 207 (690)
..+.+++++++|++... +...+.+.+.+...... ++.|||++... .-+.+.++.|.+..+.+
T Consensus 6 ~~~~v~ii~~~g~l~f~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~ 76 (117)
T PF01740_consen 6 THDGVLIIRLDGPLFFA---------NAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKEL 76 (117)
T ss_dssp EETTEEEEEEESEESHH---------HHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHH
T ss_pred EECCEEEEEEeeEEEHH---------HHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHH
Confidence 35678999999999863 35788999988887765 89999999874 56788888999999999
Q ss_pred hhcCCeEEE
Q 005581 208 KKSGKFIIG 216 (690)
Q Consensus 208 r~sgKpVvA 216 (690)
++.|..++-
T Consensus 77 ~~~g~~~~l 85 (117)
T PF01740_consen 77 RRRGVQLVL 85 (117)
T ss_dssp HHTTCEEEE
T ss_pred HHCCCEEEE
Confidence 887777753
No 292
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=83.51 E-value=0.8 Score=50.02 Aligned_cols=142 Identities=17% Similarity=0.183 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEEccC-------------CCcchhhhhHHHHH----HHHh-cCCCCEEEEECccccHH
Q 005581 414 IGEQLIEKIRKVRESKRYKAAIIRIDS-------------PGGDALASDLMWRE----IRLL-SESKPVIASMSDVAASG 475 (690)
Q Consensus 414 ~~~~l~~~l~~a~~D~~VkaVVLrinS-------------pGG~~~as~~i~~~----I~~l-~~~KPVVa~v~g~AaSG 475 (690)
--.+|...|++...+..|+|..+.-.. -.|+.+-+-.-|-. |... .++.|+.+++++.+--|
T Consensus 83 Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~g 162 (380)
T KOG1683|consen 83 LKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAG 162 (380)
T ss_pred HHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccC
Confidence 357888999999999999998875322 12333333222322 2222 35788888888888888
Q ss_pred H--HHHHHhcCeEEEe--cCceeccccccccccchHHHHHHcCCceeeecccchhhhhhccCCCCChhHHHHHHHHHHHH
Q 005581 476 G--YYMAMAAGTILAE--NLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNA 551 (690)
Q Consensus 476 G--y~iA~aaD~I~A~--p~t~~GSIGv~~~~~~~~~l~~klGi~~~~i~~g~~~~~~~~~~~~~s~~~~~~~~~~i~~~ 551 (690)
| +.++-||++++.- |.=..| ...++..+|+... .++.+
T Consensus 163 k~~vvVg~c~gf~v~r~l~~y~~~----------~~~~l~e~g~~p~----------------------------~iD~~ 204 (380)
T KOG1683|consen 163 KLPVVVGNCCGFRVNRLLPPYTIG----------LNELLLEIGADPW----------------------------LIDSL 204 (380)
T ss_pred CccEEeccCCceEEEecccHHHHH----------HHHHHHHcCCCHH----------------------------HHHHH
Confidence 8 8889999998877 322212 3344545555221 23333
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHHcCCcccccC--hHHHHHH
Q 005581 552 YKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGG--FSRAVAI 602 (690)
Q Consensus 552 y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e~GLVD~ig~--~~~ai~~ 602 (690)
-..|=-.|++. .+.++.-++-.||++.||+|+++. .++++..
T Consensus 205 ~t~fGf~~g~~---------~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~ 248 (380)
T KOG1683|consen 205 ITKFGFRVGER---------ALADGVGFDVAEALAVGLGDEIGPRIEEELLEK 248 (380)
T ss_pred HHhcCccccHH---------HHhhccCccHHHHHhhccchhccchhHHHHHHH
Confidence 33333333333 367899999999999999999999 5666554
No 293
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=81.55 E-value=13 Score=38.66 Aligned_cols=117 Identities=20% Similarity=0.152 Sum_probs=69.8
Q ss_pred cCCeeEecchhHHHHHHHHHhCCCCCCCCCcccccccccccccccccCCCCCcEEEEEeecccccCCCCCCCCCcchHHH
Q 005581 337 EGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGE 416 (690)
Q Consensus 337 ~GLID~i~~~de~~~~l~~~~g~~~~~~~~~v~~~~y~~~~~~~~~~~~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~ 416 (690)
.+.-+...+.+++.+.|.+.+..-.|+...+.. |+.|++..-.... .....+
T Consensus 32 ~~~~~~~~~~~~l~~~l~~~l~~l~D~H~~~~~--------------------IgYl~i~~f~~~~--------~~~~~~ 83 (250)
T cd07563 32 AQVYLDITSPEELAAVLTADLQELGDGHLNVSY--------------------IGYLRIDSFGGFE--------IAAAEA 83 (250)
T ss_pred ccccccCCCHHHHHHHHHHhhhccCCCcEEEEE--------------------eEEEEEcccCChh--------hhhhHH
Confidence 333335567778877777766543343332221 7777776643210 012234
Q ss_pred HHHHHHHHHHhCCCceEEEEEcc-CCCcchhhhhHHHHHHHH-------------------------------hcCCCCE
Q 005581 417 QLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL-------------------------------LSESKPV 464 (690)
Q Consensus 417 ~l~~~l~~a~~D~~VkaVVLrin-SpGG~~~as~~i~~~I~~-------------------------------l~~~KPV 464 (690)
.+.+.++++.+. +++||.+- .+||....+..+...+.. ...++||
T Consensus 84 ~~~~~~~~l~~~---~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 160 (250)
T cd07563 84 LLDEALDKLADT---DALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKPV 160 (250)
T ss_pred HHHHHHHHhcCC---CeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCCE
Confidence 555666666543 88898663 367776555444433320 0125899
Q ss_pred EEEECccccHHHHHHHHhcC
Q 005581 465 IASMSDVAASGGYYMAMAAG 484 (690)
Q Consensus 465 Va~v~g~AaSGGy~iA~aaD 484 (690)
++.+++.++|+|=.++.+.-
T Consensus 161 ~vL~~~~T~SaaE~~a~~lk 180 (250)
T cd07563 161 YVLTSPVTFSAAEEFAYALK 180 (250)
T ss_pred EEEeCCCcCcHHHHHHHHHH
Confidence 99999999999999999874
No 294
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=80.57 E-value=1.6 Score=42.51 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=35.0
Q ss_pred CCCcEEEEEeecccccCCCCCCCCCcchH-HHHHHHHHHHHHhCCCceEEEEEccCCCcchhh
Q 005581 386 GGDQIAVIRASGSISRVRSPLSLSSSGII-GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA 447 (690)
Q Consensus 386 ~~~~IAvI~i~G~I~~~~~~~~~~~~~~~-~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a 447 (690)
.++++-|+..+|.|.... ... -+++...|.-|..+| -||||..||||.+.+
T Consensus 96 ~~~r~~VldF~Gdi~A~~--------v~~LReeisail~~a~~~D---eV~~rLES~GG~Vh~ 147 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASE--------VESLREEISAILSVATPED---EVLVRLESPGGMVHG 147 (155)
T ss_pred CCCeEEEEecCCCccHHH--------HHHHHHHHHHHHHhCCCCC---eEEEEEecCCceeec
Confidence 368999999999998421 112 344555555555443 589999999998754
No 295
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=80.37 E-value=7.9 Score=34.51 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=50.2
Q ss_pred CeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-CCCCHHHHHHHHHHHHHHhhcCCeEEE
Q 005581 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDFKKSGKFIIG 216 (690)
Q Consensus 139 ~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-~Gg~~~~~~eI~~aI~~~r~sgKpVvA 216 (690)
+.+++++++|++.... ..++.+.+.......+.+.|+|++.. +--+.+....+.+..++++..|+.++-
T Consensus 9 ~~~~v~~l~G~L~~~~---------a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l 78 (109)
T cd07041 9 DGVLVLPLIGDLDDER---------AEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTIL 78 (109)
T ss_pred CCEEEEeeeeeECHHH---------HHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEE
Confidence 4588999999988643 45676666554443477899999965 446777788888888888877776653
No 296
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=79.95 E-value=12 Score=39.34 Aligned_cols=159 Identities=16% Similarity=0.213 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHh--cCCCHHHHHHHHhcCcccHHHHHhcCCeeEecchhHHHHHHHHHhCCCCCCCCCccc--cc
Q 005581 296 ALLDNIYGNWLDKVSST--KGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVD--YR 371 (690)
Q Consensus 296 ~~ld~~~~~f~~~Va~~--Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~~de~~~~l~~~~g~~~~~~~~~v~--~~ 371 (690)
...+.+|..+-+..... +|++-+.+++-.. -.+..+.+.+|+...+.+.++.-.+....+.. +.
T Consensus 4 ~~fd~~w~~~~~~y~~~~~~g~dW~~~~~~y~------------~~~~~~~~~~e~~~~l~~ml~~L~d~H~~~~~~~~~ 71 (266)
T cd07562 4 QMFDEAWRLVRDNFYDPDMHGVDWDAVRAEYR------------PLLPRAATRAELADVLNEMLGELNDSHTGVSGLRYR 71 (266)
T ss_pred HHHHHHHHHHHhhccCCCCCCCCHHHHHHHHH------------HHHhhcCCHHHHHHHHHHHHHHHcCCccchHHHHHH
Confidence 45666666665555443 5555555543322 13444566777777766666543333332221 11
Q ss_pred ccccccccccccCCCCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccC-CCcchhhhhH
Q 005581 372 KYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-PGGDALASDL 450 (690)
Q Consensus 372 ~y~~~~~~~~~~~~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinS-pGG~~~as~~ 450 (690)
.+......... ....++|+.|++..- . ...+.+.++++....+++++||.+-. +||.+ ++.
T Consensus 72 ~~~~~~~~~~~-~~~~~~igYi~i~~~-~--------------~~~~~~~~~~~~~~~~~~glIiDlR~N~GG~~--~~~ 133 (266)
T cd07562 72 DWVESNREYVE-ELSDGRIGYVHIPDM-G--------------DDGFAEFLRDLLAEVDKDGLIIDVRFNGGGNV--ADL 133 (266)
T ss_pred HHHHHHHHHHH-HhcCCcEEEEEeCCC-C--------------hHHHHHHHHHHHhcCCCceEEEEecCCCCCcH--HHH
Confidence 11100000000 112378999999864 1 12344444444444448999987633 56662 223
Q ss_pred HHHHHHH-------hc------------CCCCEEEEECccccHHHHHHHHhcC
Q 005581 451 MWREIRL-------LS------------ESKPVIASMSDVAASGGYYMAMAAG 484 (690)
Q Consensus 451 i~~~I~~-------l~------------~~KPVVa~v~g~AaSGGy~iA~aaD 484 (690)
+...+.. .+ -.+||++.+++.++|+|=.++.+..
T Consensus 134 l~~~~~~~~~~~~~~r~~~~~~~~p~~~~~~pv~vL~~~~t~SaaE~~a~~lk 186 (266)
T cd07562 134 LLDFLSRRRYGYDIPRGGGKPVTYPSGRWRGPVVVLVNEGSASDAEIFAYGFR 186 (266)
T ss_pred HHHHhCCCceEEEccCCCCCCCCCcccccCCCEEEEECCCCCchHHHHHHHHH
Confidence 3332211 00 1589999999999999999998873
No 297
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=79.68 E-value=14 Score=32.55 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=52.9
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-CCCHHHHHHHHHHHHHHhhcCCeEEE
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFIIG 216 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-Gg~~~~~~eI~~aI~~~r~sgKpVvA 216 (690)
.+.+.+++++|++.-. +...+.+.+..+..++..+.|+|++..- .-+.+.+..|....+++++.|+.++-
T Consensus 6 ~~~v~ii~~~G~l~f~---------~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~l 76 (100)
T cd06844 6 VDDYWVVRLEGELDHH---------SVEQFKEELLHNITNVAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFVL 76 (100)
T ss_pred ECCEEEEEEEEEecHh---------hHHHHHHHHHHHHHhCCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4569999999998753 3566777776655556789999999764 35677778888888888887877754
Q ss_pred E
Q 005581 217 Y 217 (690)
Q Consensus 217 y 217 (690)
.
T Consensus 77 ~ 77 (100)
T cd06844 77 T 77 (100)
T ss_pred E
Confidence 4
No 298
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=79.46 E-value=8.9 Score=33.98 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=50.2
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-CCCHHHHHHHHHHHHHHhhcCCeEE
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFII 215 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-Gg~~~~~~eI~~aI~~~r~sgKpVv 215 (690)
.+.++++++.|++.-. +.+.+.+.+..+-..+..+.|+|++..- .-+.+....+....+++++.|+.++
T Consensus 6 ~~~~~vi~l~G~L~f~---------~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~l~ 75 (106)
T TIGR02886 6 KGDVLIVRLSGELDHH---------TAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGEVI 75 (106)
T ss_pred ECCEEEEEEecccchh---------hHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCEEE
Confidence 4579999999998753 4567888887765445688999998764 3455666667777777777777665
No 299
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=79.38 E-value=3.5 Score=44.69 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCceEEEEEccCCCcch-hhhhHHHHHHHHhcCCCCEEEEECcccc
Q 005581 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDA-LASDLMWREIRLLSESKPVIASMSDVAA 473 (690)
Q Consensus 417 ~l~~~l~~a~~D~~VkaVVLrinSpGG~~-~as~~i~~~I~~l~~~KPVVa~v~g~Aa 473 (690)
++.+.|+.+.+||+.++|+|.+...|-.- .+.+ -++....+||||+++.|..+
T Consensus 211 ~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~----fi~~~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 211 NFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAE----WIKNNPIKKPVVSFIAGITA 264 (317)
T ss_pred CHHHHHHHHhhCCCccEEEEEEecCCchhHHHHH----HHHhhcCCCcEEEEEecCCC
Confidence 56778888899999999999998643321 2222 22222348999999999887
No 300
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=78.53 E-value=12 Score=31.98 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=51.6
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCC-CCCHHHHHHHHHHHHHHhhcCCeEE
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFII 215 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~-Gg~~~~~~eI~~aI~~~r~sgKpVv 215 (690)
.+.+.++.+.|++.-. +...+.+.+.++..++ ++.|++++... .-+.+.+..|.+..+++++.|+.+.
T Consensus 6 ~~~~~ii~l~G~l~~~---------~~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v~ 74 (99)
T cd07043 6 RGGVLVVRLSGELDAA---------TAPELREALEELLAEG-PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRLV 74 (99)
T ss_pred ECCEEEEEEeceeccc---------chHHHHHHHHHHHHcC-CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeEE
Confidence 4578999999997753 3567777777776554 78999999775 4567778888888888888777654
No 301
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=77.94 E-value=13 Score=32.81 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=51.1
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCC-CCHHHHHHHHHHHHHHhhcCCeEE
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFII 215 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~G-g~~~~~~eI~~aI~~~r~sgKpVv 215 (690)
..+.+++|.+.|.+.-. +...+.+.|..+..++..+.|++++.... -+.+.+..|....+.+++.|+.++
T Consensus 9 ~~~~~~vi~~~G~l~~~---------~~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~~~ 79 (108)
T TIGR00377 9 VQEGVVIVRLSGELDAH---------TAPLLREKVTPAAERTGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQLV 79 (108)
T ss_pred EECCEEEEEEecccccc---------cHHHHHHHHHHHHHhcCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCEEE
Confidence 45679999999998753 35678888888776667889999887643 344556666666777767677654
Q ss_pred EE
Q 005581 216 GY 217 (690)
Q Consensus 216 Ay 217 (690)
-+
T Consensus 80 l~ 81 (108)
T TIGR00377 80 LV 81 (108)
T ss_pred EE
Confidence 33
No 302
>PLN02522 ATP citrate (pro-S)-lyase
Probab=76.22 E-value=4.9 Score=47.31 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcccc
Q 005581 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (690)
Q Consensus 417 ~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~Aa 473 (690)
++.+.|+.+.+||++|+|+|.+.-.|. ..+...+.+++.+.+||||++..|.++
T Consensus 209 ~~~D~L~~~~~Dp~Tk~IvlygEiGg~---~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 209 TLSDHVLRFNNIPQIKMIVVLGELGGR---DEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred CHHHHHHHHhcCCCCCEEEEEEecCch---hHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 357778889999999999999863222 234556667665568999999998877
No 303
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=75.55 E-value=4.1 Score=43.92 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcccc
Q 005581 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (690)
Q Consensus 417 ~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~Aa 473 (690)
++.+.|+.+.+||++|+|+|.+.+.|-.......+.+ ..+.+||||+...|...
T Consensus 192 ~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~---aa~~~KPVV~lk~Grs~ 245 (300)
T PLN00125 192 NFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIK---ESGTEKPVVAFIAGLTA 245 (300)
T ss_pred CHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHH---HhcCCCCEEEEEecCCC
Confidence 4667788889999999999999864433322323322 23348999999998876
No 304
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=74.68 E-value=5.8 Score=42.84 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhCC---CceEEEE-EccCCCcch-----hhhhHHHHHHHHhcCCCCEEEEEC---ccccHHHHHHHH
Q 005581 414 IGEQLIEKIRKVRESK---RYKAAII-RIDSPGGDA-----LASDLMWREIRLLSESKPVIASMS---DVAASGGYYMAM 481 (690)
Q Consensus 414 ~~~~l~~~l~~a~~D~---~VkaVVL-rinSpGG~~-----~as~~i~~~I~~l~~~KPVVa~v~---g~AaSGGy~iA~ 481 (690)
...+++++|+.+.+.+ .+.+||| |+ ||+. |-.+.+.++|... +.|||+.|| +.. ..=.
T Consensus 56 A~~~I~~al~~~~~~~~~~~~Dviii~RG---GGs~eDL~~FN~e~varai~~~--~~PvisaIGHe~D~t-----i~D~ 125 (319)
T PF02601_consen 56 AAASIVSALRKANEMGQADDFDVIIIIRG---GGSIEDLWAFNDEEVARAIAAS--PIPVISAIGHETDFT-----IADF 125 (319)
T ss_pred hHHHHHHHHHHHHhccccccccEEEEecC---CCChHHhcccChHHHHHHHHhC--CCCEEEecCCCCCch-----HHHH
Confidence 4688999999998765 5667665 54 7764 3467777888765 999999987 332 3447
Q ss_pred hcCeEEEecCce
Q 005581 482 AAGTILAENLTL 493 (690)
Q Consensus 482 aaD~I~A~p~t~ 493 (690)
.||.+.++|++-
T Consensus 126 vAd~ra~TPtaa 137 (319)
T PF02601_consen 126 VADLRAPTPTAA 137 (319)
T ss_pred HHHhhCCCHHHH
Confidence 789999999774
No 305
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=74.13 E-value=12 Score=42.02 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEc-CCCCCCHHHHHHHHHHHHH-----------------Hhhc-----CCeEEEEe
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHI-EPLSCGWGKVEEIRRHVVD-----------------FKKS-----GKFIIGYV 218 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i-~s~Gg~~~~~~eI~~aI~~-----------------~r~s-----gKpVvAy~ 218 (690)
.+..++..+|+++.++. ++|+||++ +.|||.+.++..+..+... +..+ ++|+++.+
T Consensus 216 ~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~PlvvLv 294 (406)
T COG0793 216 GTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVVLV 294 (406)
T ss_pred chHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEEEE
Confidence 45778999999998776 99999999 5678888888888776651 2122 48999999
Q ss_pred c-CcchhhhHHhhc
Q 005581 219 P-VCGEKEYYLACA 231 (690)
Q Consensus 219 ~-~aas~gY~LAsa 231 (690)
+ ..+|++=.+|-+
T Consensus 295 n~~SASAsEI~aga 308 (406)
T COG0793 295 NEGSASASEIFAGA 308 (406)
T ss_pred CCCCccHHHHHHHH
Confidence 8 667765444443
No 306
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=72.47 E-value=8.3 Score=39.95 Aligned_cols=84 Identities=19% Similarity=0.312 Sum_probs=57.2
Q ss_pred CCcEEEEEeecccccCCC------CCC------CCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHH
Q 005581 387 GDQIAVIRASGSISRVRS------PLS------LSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWRE 454 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~------~~~------~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~ 454 (690)
+++|.+|.=+|+.+...- .++ ..++.....++++.|+-..+|+..++|||-..- ||++ -+.-.+-
T Consensus 176 ~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEI-GG~A--Ee~AA~f 252 (329)
T KOG1255|consen 176 RGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEI-GGSA--EEEAAEF 252 (329)
T ss_pred CCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEecc-CChh--hHHHHHH
Confidence 578999999998875321 111 112334456899999999999999999997543 5654 2333444
Q ss_pred HHHhc---CCCCEEEEECcccc
Q 005581 455 IRLLS---ESKPVIASMSDVAA 473 (690)
Q Consensus 455 I~~l~---~~KPVVa~v~g~Aa 473 (690)
+++.. ..||||.++.|..|
T Consensus 253 lk~~nSg~~~kPVvsFIAG~tA 274 (329)
T KOG1255|consen 253 LKEYNSGSTAKPVVSFIAGVTA 274 (329)
T ss_pred HHHhccCCCCCceeEEeecccC
Confidence 55543 37999999998766
No 307
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=72.38 E-value=5.8 Score=42.79 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=53.2
Q ss_pred cCCeEEEEEEceeeccc----cc-c--ccC-----CCC--CHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHH
Q 005581 137 RKGSVLTMKLRGQIADQ----LK-S--RFS-----SGL--SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRR 202 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~----~~-~--~~~-----~~~--s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~ 202 (690)
+.+.|..|.=+|.+.-. .. . .|+ +.- .--++.+.|+...+||+.++|+|.+.+.|-......++.+
T Consensus 149 ~~G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~ 228 (300)
T PLN00125 149 KPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIK 228 (300)
T ss_pred CCCcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHH
Confidence 46778888888865432 11 1 111 111 3336788899999999999999999987755555544444
Q ss_pred HHHHHhhcCCeEEEEecC
Q 005581 203 HVVDFKKSGKFIIGYVPV 220 (690)
Q Consensus 203 aI~~~r~sgKpVvAy~~~ 220 (690)
+ .+ .+||||++-.+
T Consensus 229 a---a~-~~KPVV~lk~G 242 (300)
T PLN00125 229 E---SG-TEKPVVAFIAG 242 (300)
T ss_pred H---hc-CCCCEEEEEec
Confidence 3 32 38999999763
No 308
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=71.98 E-value=18 Score=40.67 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccC-CCcchhhhhHHHHHHHH--------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-PGGDALASDLMWREIRL-------- 457 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinS-pGG~~~as~~i~~~I~~-------- 457 (690)
+++|+.|+|..--. ...+++..+++++.++. ++++||.+-. |||...++..+...+..
T Consensus 202 ~~~IGyI~I~~F~~------------~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~ 268 (406)
T COG0793 202 KGRIGYIRIPSFGE------------GTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTR 268 (406)
T ss_pred CceEEEEEeccccc------------chHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEe
Confidence 34688888865432 34567888999998876 9999998844 88888777666554330
Q ss_pred -----------hc----CCCCEEEEECccccHHHHHHHHhcC-----eEEEecCceecccc
Q 005581 458 -----------LS----ESKPVIASMSDVAASGGYYMAMAAG-----TILAENLTLTGSIG 498 (690)
Q Consensus 458 -----------l~----~~KPVVa~v~g~AaSGGy~iA~aaD-----~I~A~p~t~~GSIG 498 (690)
.. .++|+|+.+++..||++=.+|-+-- .||-+.+.=.|++.
T Consensus 269 ~r~g~~~~~~~~~~~~~~~~PlvvLvn~~SASAsEI~agalqd~~ra~lVG~~TfGkg~vQ 329 (406)
T COG0793 269 GRNGKVNVYFSASGEALYDGPLVVLVNEGSASASEIFAGALQDYGRATLVGETTFGKGTVQ 329 (406)
T ss_pred cCCCceeeccccccccCCCCCEEEEECCCCccHHHHHHHHHHHcCCcEEEecccccceEEE
Confidence 00 1599999999999999977776653 35553333334444
No 309
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=71.77 E-value=7.2 Score=42.36 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=53.4
Q ss_pred ccccccCCeEEEEEEceeeccccc----c---cc------CCC-CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHH
Q 005581 132 PWERVRKGSVLTMKLRGQIADQLK----S---RF------SSG-LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV 197 (690)
Q Consensus 132 p~~~~~~~~VlvI~l~G~I~~~~~----~---~~------~~~-~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~ 197 (690)
|....+.+.|.+|-=+|.+.-... . .+ ++. +.--++.+.|+...+||+.++|++.+...|-.-..+
T Consensus 163 p~~~~~~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~a 242 (317)
T PTZ00187 163 PGHIHKKGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEA 242 (317)
T ss_pred CcCCCCCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCchhHHH
Confidence 333335678999988887653211 1 11 111 112357888888899999999999998876443333
Q ss_pred HHHHHHHHHHhhcCCeEEEEecC
Q 005581 198 EEIRRHVVDFKKSGKFIIGYVPV 220 (690)
Q Consensus 198 ~eI~~aI~~~r~sgKpVvAy~~~ 220 (690)
. +.++.. ..+||||+|..+
T Consensus 243 a---~fi~~~-~~~KPVVa~~aG 261 (317)
T PTZ00187 243 A---EWIKNN-PIKKPVVSFIAG 261 (317)
T ss_pred H---HHHHhh-cCCCcEEEEEec
Confidence 2 333332 347999999873
No 310
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=71.57 E-value=23 Score=39.56 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=58.4
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEc-cCCCcchhhhhHHHHHHHH--------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI-DSPGGDALASDLMWREIRL-------- 457 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLri-nSpGG~~~as~~i~~~I~~-------- 457 (690)
.++|+.|++..--. -..+++.++|+++.+. +++++||.+ +.+||....+..|...+..
T Consensus 193 ~~~IgYi~i~~F~~------------~~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~ 259 (389)
T PLN00049 193 SPKIGYIKLTTFNQ------------NASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIA 259 (389)
T ss_pred CCCEEEEEeccccc------------hhHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEe
Confidence 36899999955322 2357788888888654 689999876 3368877655555444310
Q ss_pred ----------------hcCCCCEEEEECccccHHHHHHHHhc
Q 005581 458 ----------------LSESKPVIASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 458 ----------------l~~~KPVVa~v~g~AaSGGy~iA~aa 483 (690)
....+||++.+++..||++=.+|.+=
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~al 301 (389)
T PLN00049 260 DSRGVRDIYDADGSSAIATSEPLAVLVNKGTASASEILAGAL 301 (389)
T ss_pred cCCCceeEEecCCCccccCCCCEEEEECCCCccHHHHHHHHH
Confidence 01147999999999999998887765
No 311
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=70.81 E-value=7 Score=41.85 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=48.5
Q ss_pred cCCeEEEEEEceeecc----cccc---ccC----CCCCH---HHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHH
Q 005581 137 RKGSVLTMKLRGQIAD----QLKS---RFS----SGLSL---PQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRR 202 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~----~~~~---~~~----~~~s~---~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~ 202 (690)
..+.|+.|.=+|.+.- .... .|+ -+... -++.+.|+...+||+.++|++.+.+.+-+.. +.++
T Consensus 142 ~~G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~---~~~~ 218 (286)
T TIGR01019 142 KPGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEE---EAAD 218 (286)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHH---HHHH
Confidence 4677888887775442 1111 111 01111 3677888888999999999999997653333 2222
Q ss_pred HHHHHhhcCCeEEEEecC
Q 005581 203 HVVDFKKSGKFIIGYVPV 220 (690)
Q Consensus 203 aI~~~r~sgKpVvAy~~~ 220 (690)
.+.. ..+||||++-.+
T Consensus 219 ~~~~--~~~KPVV~lk~G 234 (286)
T TIGR01019 219 FIKQ--NMSKPVVGFIAG 234 (286)
T ss_pred HHHh--cCCCCEEEEEec
Confidence 2222 158999999763
No 312
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=70.74 E-value=32 Score=29.87 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=53.8
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCC-CceEEEEEcCCC-CCCHHHHHHHHHHHHHHhhcCCeE
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDP-RIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFI 214 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~-~IkgVvL~i~s~-Gg~~~~~~eI~~aI~~~r~sgKpV 214 (690)
..+.+.++.+.|++.-. +...+.+.+.++..+. ..+.|+|++... .-+.+.+.-|.+..+.+++.|+.+
T Consensus 6 ~~~~~~v~~l~G~l~~~---------~~~~l~~~~~~~~~~~~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~~ 76 (107)
T cd07042 6 EPPGVLIYRIDGPLFFG---------NAEYFKDRLLRLVDEDPPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVEL 76 (107)
T ss_pred cCCCEEEEEecCceEee---------hHHHHHHHHHHHhccCCCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCEE
Confidence 45679999999998753 3567777777776543 257889998775 456777888888899988888877
Q ss_pred EEE
Q 005581 215 IGY 217 (690)
Q Consensus 215 vAy 217 (690)
+-.
T Consensus 77 ~l~ 79 (107)
T cd07042 77 YLA 79 (107)
T ss_pred EEe
Confidence 644
No 313
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=70.65 E-value=3.8 Score=44.98 Aligned_cols=150 Identities=14% Similarity=0.152 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcCC----------C---C----CCHHHHHHHHHHHHHHhhcCCeEEEEecCcchh-h
Q 005581 164 LPQICENFVKAAYDPRIVGIYLHIEP----------L---S----CGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEK-E 225 (690)
Q Consensus 164 ~~~i~~~L~~Aa~D~~IkgVvL~i~s----------~---G----g~~~~~~eI~~aI~~~r~sgKpVvAy~~~aas~-g 225 (690)
..++.+.|++...+..|.|..+.-.. | . -+.+..-.+.+.+.....|..|+.+.++.+... +
T Consensus 84 k~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk 163 (380)
T KOG1683|consen 84 KHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGK 163 (380)
T ss_pred HHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCC
Confidence 35788899999888887887763211 1 1 122222334444555557778887777755443 3
Q ss_pred --hHHhhccCeeEec--CCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHH
Q 005581 226 --YYLACACEELYAP--PSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNI 301 (690)
Q Consensus 226 --Y~LAsaaD~I~a~--p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~ 301 (690)
..++.+|+..++- |.=..+++ .++..+|+.+ + .+|.+
T Consensus 164 ~~vvVg~c~gf~v~r~l~~y~~~~~----------~~l~e~g~~p--------------~---------------~iD~~ 204 (380)
T KOG1683|consen 164 LPVVVGNCCGFRVNRLLPPYTIGLN----------ELLLEIGADP--------------W---------------LIDSL 204 (380)
T ss_pred ccEEeccCCceEEEecccHHHHHHH----------HHHHHcCCCH--------------H---------------HHHHH
Confidence 7888888877765 32222222 2333344432 1 23333
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEecc--hhHHHHHHHHHhCCCCCC
Q 005581 302 YGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLY--DDEVISMLKERLGVQKDK 363 (690)
Q Consensus 302 ~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~~--~de~~~~l~~~~g~~~~~ 363 (690)
-..|=-.++. ..+.++.-|+..||++-||+|.++. .+|+.. +.++|.+..+
T Consensus 205 ~t~fGf~~g~---------~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~--~~~~g~kT~k 257 (380)
T KOG1683|consen 205 ITKFGFRVGE---------RALADGVGFDVAEALAVGLGDEIGPRIEEELLE--KGRAGIKTGK 257 (380)
T ss_pred HHhcCccccH---------HHHhhccCccHHHHHhhccchhccchhHHHHHH--HHhhhhhccC
Confidence 3333222222 2356778899999999999999998 444443 3445665443
No 314
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=70.64 E-value=18 Score=34.50 Aligned_cols=70 Identities=21% Similarity=0.164 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEEEcc-CCCcchhhhhHHHHHHHH---------------------------hcCCCCE
Q 005581 413 IIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL---------------------------LSESKPV 464 (690)
Q Consensus 413 ~~~~~l~~~l~~a~~D~~VkaVVLrin-SpGG~~~as~~i~~~I~~---------------------------l~~~KPV 464 (690)
...+.+.+.++++.+ .+++++||.+- .+||+......+...+.. ..-.+||
T Consensus 15 ~~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 93 (169)
T PF03572_consen 15 SFDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPV 93 (169)
T ss_dssp HHHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEE
T ss_pred ccHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCE
Confidence 346777777777776 78899999884 378877655554443321 0126899
Q ss_pred EEEECccccHHHHHHHHhc
Q 005581 465 IASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 465 Va~v~g~AaSGGy~iA~aa 483 (690)
++.+++.++|++-.++.+.
T Consensus 94 ~vL~~~~t~Saae~fa~~l 112 (169)
T PF03572_consen 94 YVLTDENTASAAEIFASAL 112 (169)
T ss_dssp EEEE-TTBBTHHHHHHHHH
T ss_pred EEEeCCCCCChhHHHHHHH
Confidence 9999999999999999887
No 315
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=69.59 E-value=29 Score=36.49 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=58.9
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-CCCcchhhhhHHHHHHHH--------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL-------- 457 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-SpGG~~~as~~i~~~I~~-------- 457 (690)
.++|+.|+++.-.. -..+++.++++++++. +++++||.+- -+||.+..+..+...+..
T Consensus 63 ~~~IGYi~i~~F~~------------~~~~~l~~a~~~l~~~-~~~~LIlDLR~N~GG~~~~a~~las~f~~~~~~~~~~ 129 (256)
T cd07561 63 GKKVGYLVYNSFTS------------GYDDELNQAFAEFKAQ-GVTELVLDLRYNGGGLVSSANLLASLLAPAVALGQVF 129 (256)
T ss_pred CCcEEEEEECcccc------------chHHHHHHHHHHHHHc-CCCeEEEEeCCCCCccHHHHHHHHHHhcCcccCCCeE
Confidence 57999999986433 1457888889888764 7899998763 377876655444443321
Q ss_pred ----hc-----------------------CCCCEEEEECccccHHHHHHHHhc
Q 005581 458 ----LS-----------------------ESKPVIASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 458 ----l~-----------------------~~KPVVa~v~g~AaSGGy~iA~aa 483 (690)
.+ ..+||++.+++..||++=.++.+-
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~VL~~~~TASAaE~~a~~L 182 (256)
T cd07561 130 ATLEYNDKRSANNEDLLFSSKTLAGGNSLNLSKVYVLTSGSTASASELVINSL 182 (256)
T ss_pred EEEEecCCccCCCceeecccccccccCcCCcccEEEEECCCcccHHHHHHHHh
Confidence 00 026999999999999988877664
No 316
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=68.58 E-value=9.5 Score=43.42 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECccccHH
Q 005581 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASG 475 (690)
Q Consensus 417 ~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~AaSG 475 (690)
++.+.|+.+.+|+++|+|+|.+++-+ ......++.++...+||||+...|....|
T Consensus 190 ~~~d~l~~l~~D~~t~~I~ly~E~~~----~~~~f~~aa~~a~~~KPVv~~k~Grs~~g 244 (447)
T TIGR02717 190 DESDLLEYLADDPDTKVILLYLEGIK----DGRKFLKTAREISKKKPIVVLKSGTSEAG 244 (447)
T ss_pred CHHHHHHHHhhCCCCCEEEEEecCCC----CHHHHHHHHHHHcCCCCEEEEecCCChhh
Confidence 45677888899999999999998632 12445666666655999999999887654
No 317
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=68.43 E-value=1.7e+02 Score=33.98 Aligned_cols=248 Identities=18% Similarity=0.210 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCC-CCH----------HHHHHHHHHHHHHhh--cCCeEEEEecC--c---ch
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGW----------GKVEEIRRHVVDFKK--SGKFIIGYVPV--C---GE 223 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~G-g~~----------~~~~eI~~aI~~~r~--sgKpVvAy~~~--a---as 223 (690)
-..+.|.+.|.+-+. +..++||-+|+.- ||+ ..+.+--+.|+++|+ -++||+||.-. + .+
T Consensus 43 gd~~~l~~Wl~~~~~--~~d~~ViS~D~L~yGGLv~SR~~~~~~~~~~~rl~~l~~lk~~~p~~~iyaf~~ImR~~~~~~ 120 (497)
T PF13552_consen 43 GDPEALWDWLEENAP--DADAAVISTDMLLYGGLVPSRIHHLSLEEALERLERLRELKARNPNLPIYAFSTIMRTPPYSS 120 (497)
T ss_pred CCHHHHHHHHHhccc--cCCEEEEEHHhhhhcCcHhhcCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEEEEeccCCCCC
Confidence 447789999988854 6889999999852 333 333444456666665 35799998741 1 11
Q ss_pred ----hhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 224 ----KEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 224 ----~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
..||-.- . ...+-|..+++|. + ..++++++.+..+-.
T Consensus 121 ~~eep~yy~~y-g-----------------~~i~~~~~l~dk~----------------~-----~~~~~e~~el~~l~~ 161 (497)
T PF13552_consen 121 SDEEPDYYADY-G-----------------RKIFRYSQLLDKE----------------E-----GLSEEERKELAALKA 161 (497)
T ss_pred CCCCcHHHHHH-H-----------------HHHHHHHHhhhhh----------------h-----hcchhhHHHHHHHHh
Confidence 1222110 0 1112233344432 1 357778888887777
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhcCcccHHHHHhcCCeeEec-chhHH------------HHHHHHHhCCCCCCCCC
Q 005581 300 NIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVL-YDDEV------------ISMLKERLGVQKDKNLP 366 (690)
Q Consensus 300 ~~~~~f~~~Va~~Rg~~~~~v~~~~~~~v~~a~eAl~~GLID~i~-~~de~------------~~~l~~~~g~~~~~~~~ 366 (690)
.+=...+++.-..|..+..--+.++ +.++.|.+|.+. ..||. +....+.+++. ++ +-
T Consensus 162 ~IP~~~l~dyl~rR~~N~~vN~~li--------~l~~~Gvid~Lvig~DD~~~~g~~~~e~~~L~~~~~~~~l~-~r-v~ 231 (497)
T PF13552_consen 162 EIPPEYLEDYLARRERNLAVNRALI--------DLVKEGVIDYLVIGQDDSSPYGQTAMEQRELEAYIEELGLS-DR-VM 231 (497)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHH--------HHHhCCcceEEEeccCCCCCCCcCHHHHHHHHHHHHhcCCC-Cc-ee
Confidence 7777777777777766554433333 234455555552 21211 11112223331 11 10
Q ss_pred c------ccccccccccccccccCCCCCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHh---C-CCceEEEE
Q 005581 367 M------VDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRE---S-KRYKAAII 436 (690)
Q Consensus 367 ~------v~~~~y~~~~~~~~~~~~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~---D-~~VkaVVL 436 (690)
+ |...-..|.... ..+-+++|.|.+..+.-...-. .-.+....+.+.+.|..+.- + +.---+||
T Consensus 232 i~pGADEvg~~LlaRa~n~---~~~~~P~v~v~Ys~~~g~~~vp---~YEd~pl~esv~~hI~aaGg~~~~~~~~AD~vL 305 (497)
T PF13552_consen 232 IYPGADEVGLLLLARAYNE---YKGYKPRVYVRYSSGNGADTVP---PYEDRPLGESVKEHIRAAGGVLVDSPEEADLVL 305 (497)
T ss_pred eeCChhHHHHHHHHHHHHH---hcCCCceEEEEeCCCCCCccCC---CCCCCCHHHHHHHHHHhcCCEEcCCCCCCCEEE
Confidence 0 000000111110 1233578888888775432110 11122345566666766532 2 22233799
Q ss_pred EccCCCcchh--------------hhhHHHHHHHHh-cCCCCEEE
Q 005581 437 RIDSPGGDAL--------------ASDLMWREIRLL-SESKPVIA 466 (690)
Q Consensus 437 rinSpGG~~~--------------as~~i~~~I~~l-~~~KPVVa 466 (690)
-||+|+-... ....+.+.|+.. +++|||..
T Consensus 306 ~Vntp~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~l~~G~~Vai 350 (497)
T PF13552_consen 306 AVNTPGDGMTEESEQFANDDTPYRNLREFVDRIEEYLAKGKPVAI 350 (497)
T ss_pred EEecCCCccccccccccccccccccHHHHHHHHHHHHHcCCcEEE
Confidence 9999875442 124455566554 55899964
No 318
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=67.59 E-value=30 Score=35.18 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=55.8
Q ss_pred EEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-CCCcchhhhhHHHHHHHH------h----
Q 005581 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL------L---- 458 (690)
Q Consensus 390 IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-SpGG~~~as~~i~~~I~~------l---- 458 (690)
|+.|.+..--. -..+++.+++.++.+. +++++||.+- .+||.......+...+.. .
T Consensus 50 igYi~i~sf~~------------~~~~~~~~~l~~~~~~-~~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~ 116 (211)
T cd07560 50 IGYIRITSFSE------------NTAEELKKALKELKKQ-GMKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRN 116 (211)
T ss_pred eEEEEEcccCc------------hhHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecC
Confidence 88888876321 2356788888887755 4899998763 367776554444332211 0
Q ss_pred ------------cCCCCEEEEECccccHHHHHHHHhc
Q 005581 459 ------------SESKPVIASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 459 ------------~~~KPVVa~v~g~AaSGGy~iA~aa 483 (690)
.-.+||++.+++..+|+|=.++.+-
T Consensus 117 g~~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~l 153 (211)
T cd07560 117 GKREAYASDDGGLYDGPLVVLVNGGSASASEIVAGAL 153 (211)
T ss_pred CceEEEecCCCccCCCCEEEEeCCCcccHHHHHHHHH
Confidence 1269999999999999998888875
No 319
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=67.46 E-value=30 Score=37.70 Aligned_cols=84 Identities=21% Similarity=0.229 Sum_probs=59.5
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-CCCcchhhhhHHHHHHHH--------
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL-------- 457 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-SpGG~~~as~~i~~~I~~-------- 457 (690)
.++|+.|.+..--. -..+++.+++.++.+ .+++++||.+- .+||....+..+...+..
T Consensus 150 ~~~igYi~i~~f~~------------~~~~~~~~~l~~l~~-~~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~ 216 (334)
T TIGR00225 150 GKSVGYIRISSFSE------------HTTEDVKKALDKLEK-KNAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTK 216 (334)
T ss_pred CcEEEEEEEEeccc------------chHHHHHHHHHHHHh-ccCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 35799999987533 135678888877754 47899998763 477877665554443310
Q ss_pred --------h------cCCCCEEEEECccccHHHHHHHHhc
Q 005581 458 --------L------SESKPVIASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 458 --------l------~~~KPVVa~v~g~AaSGGy~iA~aa 483 (690)
. .-.+||++.+++..+|++=.+|.+.
T Consensus 217 ~~~g~~~~~~~~~~~~~~~pv~vLvn~~TaSaaE~~a~~l 256 (334)
T TIGR00225 217 DRNGSKRHYKANGRQPYNLPLVVLVNRGSASASEIFAGAL 256 (334)
T ss_pred cCCCcceEEecCCCccCCCCEEEEECCCCCcHHHHHHHHH
Confidence 0 0158999999999999999999887
No 320
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=67.13 E-value=9.1 Score=41.12 Aligned_cols=79 Identities=19% Similarity=0.157 Sum_probs=47.8
Q ss_pred cCCeEEEEEEceeeccc----ccc---ccC-----CCC--CHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHH
Q 005581 137 RKGSVLTMKLRGQIADQ----LKS---RFS-----SGL--SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRR 202 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~----~~~---~~~-----~~~--s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~ 202 (690)
+.+.|+.|.=+|.+.-. ... .|+ +.- .--++.+.|+...+||+.++|+|.+.+.+-+-. +.++
T Consensus 144 ~~G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~---~a~~ 220 (291)
T PRK05678 144 KKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEE---EAAE 220 (291)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHH---HHHH
Confidence 46778888888754421 110 111 111 113578888888999999999999996553322 2222
Q ss_pred HHHHHhhcCCeEEEEecC
Q 005581 203 HVVDFKKSGKFIIGYVPV 220 (690)
Q Consensus 203 aI~~~r~sgKpVvAy~~~ 220 (690)
.+... .+||||++-.+
T Consensus 221 ~~~~~--~~KPVV~lk~G 236 (291)
T PRK05678 221 YIKAN--VTKPVVGYIAG 236 (291)
T ss_pred HHHHc--CCCCEEEEEec
Confidence 22211 37999998763
No 321
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=65.67 E-value=10 Score=43.02 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhCCCceEEEE-EccCCCcch-----hhhhHHHHHHHHhcCCCCEEEEEC---ccccHHHHHHHHhcC
Q 005581 414 IGEQLIEKIRKVRESKRYKAAII-RIDSPGGDA-----LASDLMWREIRLLSESKPVIASMS---DVAASGGYYMAMAAG 484 (690)
Q Consensus 414 ~~~~l~~~l~~a~~D~~VkaVVL-rinSpGG~~-----~as~~i~~~I~~l~~~KPVVa~v~---g~AaSGGy~iA~aaD 484 (690)
...+++++|+.+...+++.+||| |+ ||+. |-.+.+.++|... +.|||+.|| +... .=..||
T Consensus 171 a~~~i~~al~~~~~~~~~dviii~RG---GGs~eDL~~Fn~e~~~rai~~~--~~Pvis~iGHe~D~ti-----~D~vAd 240 (432)
T TIGR00237 171 AVQSIVESIELANTKNECDVLIVGRG---GGSLEDLWSFNDEKVARAIFLS--KIPIISAVGHETDFTI-----SDFVAD 240 (432)
T ss_pred HHHHHHHHHHHhhcCCCCCEEEEecC---CCCHHHhhhcCcHHHHHHHHcC--CCCEEEecCcCCCccH-----HHHhhh
Confidence 36889999999987666766665 54 7765 3456677777644 999999997 4332 346789
Q ss_pred eEEEecCce
Q 005581 485 TILAENLTL 493 (690)
Q Consensus 485 ~I~A~p~t~ 493 (690)
.+.++|++-
T Consensus 241 ~ra~TPtaa 249 (432)
T TIGR00237 241 LRAPTPSAA 249 (432)
T ss_pred ccCCCcHHH
Confidence 999999773
No 322
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=64.73 E-value=29 Score=39.35 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=53.1
Q ss_pred CcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHH----HHHhcCCCCEEEEECccccHHHHHHHHh
Q 005581 410 SSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWRE----IRLLSESKPVIASMSDVAASGGYYMAMA 482 (690)
Q Consensus 410 ~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~----I~~l~~~KPVVa~v~g~AaSGGy~iA~a 482 (690)
+++.+.+.+.++++-+..|++||+|++-|- ||-..+ +.+.+. ++++..++|||+-..|.-.--|--+.-.
T Consensus 325 GG~a~~~~v~~a~~ii~~d~~vk~iliNIf--GGI~~c-d~iA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~~ 398 (422)
T PLN00124 325 GGNASEQQVVEAFKILTSDDKVKAILVNIF--GGIMKC-DVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKE 398 (422)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCcEEEEEec--CCccch-HHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHh
Confidence 455778999999999999999999999885 664443 555544 4444448999999999888777766654
No 323
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=63.81 E-value=12 Score=40.11 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcccc
Q 005581 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (690)
Q Consensus 417 ~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~Aa 473 (690)
++.+.|+.+.+||++|+|+|.+.+- |.... ...+.++. ..+||||+...|...
T Consensus 185 ~~~D~l~~l~~Dp~T~~I~lylE~~-~~~~~--~~~~~~~~-~~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 185 SFIDVLEAFEKDPETEAIVMIGEIG-GSAEE--EAADFIKQ-NMSKPVVGFIAGATA 237 (286)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecC-CchHH--HHHHHHHh-cCCCCEEEEEecCCC
Confidence 5667788888999999999999853 22211 12222222 248999999988875
No 324
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=63.79 E-value=31 Score=38.30 Aligned_cols=72 Identities=17% Similarity=0.297 Sum_probs=55.7
Q ss_pred CcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHH----HHHHhcCCCCEEEEECccccHHHHHHHHhcC
Q 005581 410 SSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWR----EIRLLSESKPVIASMSDVAASGGYYMAMAAG 484 (690)
Q Consensus 410 ~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~----~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD 484 (690)
+++.+.+.+.++++-...|++||+|.+-|- || ...++.+.+ +++....++|+|+-..|.-+.-|--|..-+.
T Consensus 289 GGgA~~e~v~~a~~~il~d~~vk~IfVNIf--GG-I~rcD~vA~GIi~Al~e~~~~vPlVVRL~GtN~e~Gk~iL~esg 364 (387)
T COG0045 289 GGGATAERVKEAFKLILSDPNVKAIFVNIF--GG-ITRCDEVAEGIIAALKEVGVNVPLVVRLEGTNVEEGKRILAESG 364 (387)
T ss_pred CCCCCHHHHHHHHHHHhcCCCccEEEEEEc--cC-cCccHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHcC
Confidence 456788999999999999999999999885 45 555555554 4455555899999999988877777666655
No 325
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=62.38 E-value=13 Score=42.08 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhCCCceEEEEEccCCCcchh-----hhhHHHHHHHHhcCCCCEEEEEC---ccccHHHHHHHHhcCeE
Q 005581 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL-----ASDLMWREIRLLSESKPVIASMS---DVAASGGYYMAMAAGTI 486 (690)
Q Consensus 415 ~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~-----as~~i~~~I~~l~~~KPVVa~v~---g~AaSGGy~iA~aaD~I 486 (690)
..+++++|+.+.+.+++.++|+- -+|||+- --+.+.++|. +++.|||++|| +... .=..||.+
T Consensus 178 ~~eIv~aI~~an~~~~~DvlIVa--RGGGSiEDLW~FNdE~vaRAi~--~s~iPvISAVGHEtD~tL-----~DfVAD~R 248 (440)
T COG1570 178 AEEIVEAIERANQRGDVDVLIVA--RGGGSIEDLWAFNDEIVARAIA--ASRIPVISAVGHETDFTL-----ADFVADLR 248 (440)
T ss_pred HHHHHHHHHHhhccCCCCEEEEe--cCcchHHHHhccChHHHHHHHH--hCCCCeEeecccCCCccH-----HHhhhhcc
Confidence 68999999999999988887662 2488763 2344555665 45999999986 3322 23567889
Q ss_pred EEecCc
Q 005581 487 LAENLT 492 (690)
Q Consensus 487 ~A~p~t 492 (690)
-++|++
T Consensus 249 ApTPTa 254 (440)
T COG1570 249 APTPTA 254 (440)
T ss_pred CCCchH
Confidence 999865
No 326
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=61.22 E-value=15 Score=39.46 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECcccc
Q 005581 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAA 473 (690)
Q Consensus 417 ~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~Aa 473 (690)
++.+.|+.+.+||++|+|+|.+.+- |.... ...+.+.. +.+||||+.-.|...
T Consensus 187 ~~~D~l~~l~~Dp~T~~I~lylE~~-~~~~~--~a~~~~~~-~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 187 NFIDVLEAFEEDPETEAIVMIGEIG-GSAEE--EAAEYIKA-NVTKPVVGYIAGVTA 239 (291)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecC-CcHHH--HHHHHHHH-cCCCCEEEEEecCCC
Confidence 4566788889999999999999843 22211 11122221 138999999988866
No 327
>PRK11186 carboxy-terminal protease; Provisional
Probab=59.28 E-value=47 Score=39.87 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=61.6
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc-CCCcchhhhhHHHHHHHH---------
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID-SPGGDALASDLMWREIRL--------- 457 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin-SpGG~~~as~~i~~~I~~--------- 457 (690)
++|++|.+..=-. -..+++.+.|.++.+ .+++++||.+- -|||....+..+...+-.
T Consensus 353 ~kIGYI~I~sF~~------------~~~~d~~~~l~~l~~-~~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~ 419 (667)
T PRK11186 353 EKVGVLDIPGFYV------------GLTDDVKKQLQKLEK-QNVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRD 419 (667)
T ss_pred CcEEEEEeccccc------------chHHHHHHHHHHHHH-CCCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEec
Confidence 5788888853211 136778888888765 57999999773 477877665555443210
Q ss_pred ----------h----cCCCCEEEEECccccHHHHHHHHhc-C----eEEEecC
Q 005581 458 ----------L----SESKPVIASMSDVAASGGYYMAMAA-G----TILAENL 491 (690)
Q Consensus 458 ----------l----~~~KPVVa~v~g~AaSGGy~iA~aa-D----~I~A~p~ 491 (690)
. .-..|+|+.+++..||++=.+|.+- | .||.+++
T Consensus 420 ~~g~~~~~~~~~~~~~~~gPlvVLVN~~SASASEIfA~alqd~~ra~vVG~~T 472 (667)
T PRK11186 420 NNGRVRVDSDTDGVVYYKGPLVVLVDRYSASASEIFAAAMQDYGRALIVGEPT 472 (667)
T ss_pred CCCceeccccCCcccccCCCEEEEeCCCCccHHHHHHHHHHhcCCEEEEeccC
Confidence 0 0146999999999999998888876 3 4555553
No 328
>PRK06091 membrane protein FdrA; Validated
Probab=58.21 E-value=15 Score=42.85 Aligned_cols=80 Identities=11% Similarity=0.068 Sum_probs=51.2
Q ss_pred cCCeEEEEEEceeecccc----c---cccC-----C-C-----CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHH
Q 005581 137 RKGSVLTMKLRGQIADQL----K---SRFS-----S-G-----LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVE 198 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~----~---~~~~-----~-~-----~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~ 198 (690)
+.+.|.+|-=+|.+.-.- . ..|+ + . .+--++.+.|+...+||+.+.|++.+.-|+-++..
T Consensus 192 ~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~-- 269 (555)
T PRK06091 192 PEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRL-- 269 (555)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHH--
Confidence 477788888888644221 1 1121 1 1 11225788889999999999999999777644442
Q ss_pred HHHHHHHHHhhcCCeEEEEecCc
Q 005581 199 EIRRHVVDFKKSGKFIIGYVPVC 221 (690)
Q Consensus 199 eI~~aI~~~r~sgKpVvAy~~~a 221 (690)
+ .+...|+.+||||++--+-
T Consensus 270 ~---fl~aar~~~KPVVvlk~Gr 289 (555)
T PRK06091 270 K---IINAMKATGKPVVALFLGY 289 (555)
T ss_pred H---HHHHHhhCCCCEEEEEecC
Confidence 3 3333445699999987643
No 329
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=57.35 E-value=12 Score=36.49 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=34.5
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHH-HHHHhhcCCCceEEEEEcCCCCCCH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICE-NFVKAAYDPRIVGIYLHIEPLSCGW 194 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~-~L~~Aa~D~~IkgVvL~i~s~Gg~~ 194 (690)
.++.+.||+.+|.|..... -++++=+. .|.-|..+ .-|+|++.||||-+
T Consensus 96 ~~~r~~VldF~Gdi~A~~v------~~LReeisail~~a~~~---DeV~~rLES~GG~V 145 (155)
T PF08496_consen 96 PKPRLFVLDFKGDIKASEV------ESLREEISAILSVATPE---DEVLVRLESPGGMV 145 (155)
T ss_pred CCCeEEEEecCCCccHHHH------HHHHHHHHHHHHhCCCC---CeEEEEEecCCcee
Confidence 4678999999999986544 34555444 44444433 56899999999854
No 330
>PLN02522 ATP citrate (pro-S)-lyase
Probab=57.24 E-value=19 Score=42.60 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=51.3
Q ss_pred cCCeEEEEEEceeecccc----cc---ccC------CC-CCHHHHHHHHHHhhcCCCceEEEEEcC-CCCCCHHHHHHHH
Q 005581 137 RKGSVLTMKLRGQIADQL----KS---RFS------SG-LSLPQICENFVKAAYDPRIVGIYLHIE-PLSCGWGKVEEIR 201 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~----~~---~~~------~~-~s~~~i~~~L~~Aa~D~~IkgVvL~i~-s~Gg~~~~~~eI~ 201 (690)
+.++|.+|.=+|.+.-.. .. .++ +. ..-.++.+.|+...+||+.++|+|.+. +.. .-+++.
T Consensus 166 ~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~----~e~~f~ 241 (608)
T PLN02522 166 RPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGR----DEYSLV 241 (608)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCch----hHHHHH
Confidence 467788888888765321 10 111 11 111346888888999999999999887 432 235555
Q ss_pred HHHHHHhhcCCeEEEEecC
Q 005581 202 RHVVDFKKSGKFIIGYVPV 220 (690)
Q Consensus 202 ~aI~~~r~sgKpVvAy~~~ 220 (690)
+++++.+ .+||||+|..+
T Consensus 242 ea~~~a~-~~KPVVa~kaG 259 (608)
T PLN02522 242 EALKQGK-VSKPVVAWVSG 259 (608)
T ss_pred HHHHHhc-CCCCEEEEecc
Confidence 6666654 57999999863
No 331
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=57.00 E-value=52 Score=34.34 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=71.5
Q ss_pred ccccccCCeEEEEEEceeecccccc-----ccC---------CCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHH
Q 005581 132 PWERVRKGSVLTMKLRGQIADQLKS-----RFS---------SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV 197 (690)
Q Consensus 132 p~~~~~~~~VlvI~l~G~I~~~~~~-----~~~---------~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~ 197 (690)
|..--+.+.|.++.=+|+++-...- .++ +...-.++++.|+...+||..+||+|-. .-||. +-
T Consensus 170 Pg~Ihk~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliG-EIGG~--AE 246 (329)
T KOG1255|consen 170 PGHIHKRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIG-EIGGS--AE 246 (329)
T ss_pred ccccccCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEe-ccCCh--hh
Confidence 3444467788899999988743210 111 1233457999999999999999999954 33433 22
Q ss_pred HHHHHHHHHHhhc---CCeEEEEecCcchhhhHHhhccCeeEecCCCeEEEeccceec-----cchhhhhhhcCcee
Q 005581 198 EEIRRHVVDFKKS---GKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQA-----SFLGGVLEKVGIEP 266 (690)
Q Consensus 198 ~eI~~aI~~~r~s---gKpVvAy~~~aas~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~-----~~~k~lLeKlGI~~ 266 (690)
++-.+.|++. +| .|||+.|+.... ++|.-.+|-.|..... -.-...|++.||.+
T Consensus 247 e~AA~flk~~-nSg~~~kPVvsFIAG~t--------------AppGrRMGHaGAIisGgkg~A~dKi~aL~~agV~v 308 (329)
T KOG1255|consen 247 EEAAEFLKEY-NSGSTAKPVVSFIAGVT--------------APPGRRMGHAGAIISGGKGTAKDKIAALRDAGVVV 308 (329)
T ss_pred HHHHHHHHHh-ccCCCCCceeEEeeccc--------------CCCcccccccceeeeCCCccHHHHHHHHHhcCeEE
Confidence 4455566665 33 499999986322 3555555555543322 12235677777765
No 332
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=55.93 E-value=18 Score=41.01 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhCCCceEEEE-EccCCCcch-----hhhhHHHHHHHHhcCCCCEEEEEC---ccccHHHHHHHHhcC
Q 005581 414 IGEQLIEKIRKVRESKRYKAAII-RIDSPGGDA-----LASDLMWREIRLLSESKPVIASMS---DVAASGGYYMAMAAG 484 (690)
Q Consensus 414 ~~~~l~~~l~~a~~D~~VkaVVL-rinSpGG~~-----~as~~i~~~I~~l~~~KPVVa~v~---g~AaSGGy~iA~aaD 484 (690)
...+++++|+.+.... +.+||| |+ ||+. |-.+.+.++|... +.|||+.|| +.. ..=..||
T Consensus 177 A~~~i~~al~~~~~~~-~Dviii~RG---GGS~eDL~~Fn~e~v~~ai~~~--~~Pvis~IGHE~D~t-----l~D~vAd 245 (438)
T PRK00286 177 AAASIVAAIERANARG-EDVLIVARG---GGSLEDLWAFNDEAVARAIAAS--RIPVISAVGHETDFT-----IADFVAD 245 (438)
T ss_pred HHHHHHHHHHHhcCCC-CCEEEEecC---CCCHHHhhccCcHHHHHHHHcC--CCCEEEeccCCCCcc-----HHHHhhh
Confidence 3688999999987643 555554 54 7764 3356677777655 999999997 433 2347789
Q ss_pred eEEEecCce
Q 005581 485 TILAENLTL 493 (690)
Q Consensus 485 ~I~A~p~t~ 493 (690)
.+.++|++-
T Consensus 246 ~ra~TPtaa 254 (438)
T PRK00286 246 LRAPTPTAA 254 (438)
T ss_pred ccCCChHHH
Confidence 999999774
No 333
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=55.63 E-value=39 Score=37.59 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHh----cCCCCEEEEECccccHHHHH
Q 005581 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLL----SESKPVIASMSDVAASGGYY 478 (690)
Q Consensus 413 ~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l----~~~KPVVa~v~g~AaSGGy~ 478 (690)
...+.+.+.++.+.+|++|++|++ |.+||.... +.+.+.|.+. ..+|||++.+.|...-.+--
T Consensus 293 a~~~~~~~al~~l~~dp~vd~ilv--~i~gg~~~~-~~va~~i~~a~~~~~~~kPvvv~~~g~~~~~~~~ 359 (386)
T TIGR01016 293 ASAERVREALKLVLSDKSVKVVFI--NIFGGITRC-DLVAKGLVEALKEVGVNVPVVVRLEGTNVEEGKK 359 (386)
T ss_pred CCHHHHHHHHHHHHcCCCCCEEEE--ECCCCCCCH-HHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHH
Confidence 567888999999999999999996 444664433 4455554432 22499988887644434433
No 334
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=55.61 E-value=48 Score=37.14 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHh----cCCCCEEEEECccccHHHHHHHH
Q 005581 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLL----SESKPVIASMSDVAASGGYYMAM 481 (690)
Q Consensus 413 ~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l----~~~KPVVa~v~g~AaSGGy~iA~ 481 (690)
...+.+.+.++.+.+|++|++|++-+ +||.... +.+.+.|.+. ..+|||++.+.|.....+--+..
T Consensus 293 a~~e~~~~aL~~ll~Dp~VdaVlv~i--~ggi~~~-~~vA~~Ii~a~~~~~~~kPvvv~l~G~~~e~~~~iL~ 362 (392)
T PRK14046 293 ASPERVAKAFRLVLSDRNVKAILVNI--FAGINRC-DWVAEGVVQAAREVGIDVPLVVRLAGTNVEEGRKILA 362 (392)
T ss_pred CCHHHHHHHHHHHHcCCCCCEEEEEc--CCCCCCH-HHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHH
Confidence 56788899999999999999999744 3554333 5555555432 24799999887755555554433
No 335
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=55.06 E-value=33 Score=36.33 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEecCcchhhhHHhhccCeeEec
Q 005581 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAP 238 (690)
Q Consensus 164 ~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~aas~gY~LAsaaD~I~a~ 238 (690)
.+..+..|-..+.||.+|+||+.-.-|| +..++++.|+...-++.+......--..|+..||..+-.
T Consensus 47 ~EttIskI~~lAdDp~mKaIVv~q~vpG--------t~~af~kIkekRpDIl~ia~~~~EDp~~i~~~aDi~~~~ 113 (275)
T PF12683_consen 47 QETTISKIVSLADDPDMKAIVVSQAVPG--------TAEAFRKIKEKRPDILLIAGEPHEDPEVISSAADIVVNP 113 (275)
T ss_dssp HHHHHHHHHGGGG-TTEEEEEEE-SS-----------HHHHHHHHHH-TTSEEEESS--S-HHHHHHHSSEEEE-
T ss_pred HHHHHHHHHHhccCCCccEEEEeCCCcc--------hHHHHHHHHhcCCCeEEEcCCCcCCHHHHhhccCeEecc
Confidence 5678888889899999999999877776 233556665555667777777777788888999887754
No 336
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=54.82 E-value=59 Score=32.89 Aligned_cols=79 Identities=9% Similarity=0.053 Sum_probs=50.6
Q ss_pred EEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcC-CCCCCHHHHHHHHHHHHH-------------
Q 005581 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIE-PLSCGWGKVEEIRRHVVD------------- 206 (690)
Q Consensus 141 VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~-s~Gg~~~~~~eI~~aI~~------------- 206 (690)
|..|.+..-.. ....+.+.+.+..... +++++||++- .+||....+..|...+..
T Consensus 61 igYi~i~~f~~---------~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~ 129 (224)
T cd06567 61 IGYIRIPSFSA---------ESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGG 129 (224)
T ss_pred eEEEEECccCC---------cchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 67777765421 1234566777777755 7999999995 566777777777776653
Q ss_pred ----H------hhcCCeEEEEec-CcchhhhHHhh
Q 005581 207 ----F------KKSGKFIIGYVP-VCGEKEYYLAC 230 (690)
Q Consensus 207 ----~------r~sgKpVvAy~~-~aas~gY~LAs 230 (690)
. ....+||+..++ ..+|++=.++.
T Consensus 130 ~~~~~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~ 164 (224)
T cd06567 130 NETEYVAPGGGSLYDGPLVVLVNEGSASASEIFAG 164 (224)
T ss_pred ceeEEecCCCCcccCCCEEEEECCCCccHHHHHHH
Confidence 0 012579999998 55565444443
No 337
>PRK06091 membrane protein FdrA; Validated
Probab=54.47 E-value=22 Score=41.44 Aligned_cols=55 Identities=9% Similarity=0.140 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECccccHH
Q 005581 417 QLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASG 475 (690)
Q Consensus 417 ~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~AaSG 475 (690)
.+.+.|+.+.+||++++|++.+.-|+-.+. +.+.+..++. +||||+...|....|
T Consensus 239 ~~~D~L~~L~~DP~TkvIvly~kppaE~v~--~~fl~aar~~--~KPVVvlk~Grs~~g 293 (555)
T PRK06091 239 SALTALEMLSADEKSEVIAFVSKPPAEAVR--LKIINAMKAT--GKPVVALFLGYTPAV 293 (555)
T ss_pred CHHHHHHHHhhCCCCcEEEEEEecCchHHH--HHHHHHHhhC--CCCEEEEEecCCchh
Confidence 467788889999999999999866543332 3455555544 999999998876655
No 338
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=54.22 E-value=34 Score=35.58 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=73.3
Q ss_pred CCceEEEEEcCCC--------CCCHHHHHHHHHHHHHHhhcCCeEEEEecC-cchhhhHHhh-ccCeeEecCCCeEEEec
Q 005581 178 PRIVGIYLHIEPL--------SCGWGKVEEIRRHVVDFKKSGKFIIGYVPV-CGEKEYYLAC-ACEELYAPPSAYFSLYG 247 (690)
Q Consensus 178 ~~IkgVvL~i~s~--------Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~-aas~gY~LAs-aaD~I~a~p~~~vg~~G 247 (690)
+..+-|+|.+++- |-+......+.+.|+++.+.|..|-..+.+ -.-.+|-.+. ..|+..+.. +|...
T Consensus 3 ~~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~---mGmla 79 (238)
T COG0528 3 PKYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADY---MGMLA 79 (238)
T ss_pred cceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhH---HHHHH
Confidence 3456778877652 347788899999999998888888655553 2233444443 455555543 44555
Q ss_pred cceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581 248 LTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (690)
Q Consensus 248 v~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~ 282 (690)
..++.+.+++.|+++||+..+...-.+....+||.
T Consensus 80 TvmNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~ 114 (238)
T COG0528 80 TVMNALALQDALERLGVDTRVQSAIAMPQVAEPYS 114 (238)
T ss_pred HHHHHHHHHHHHHhcCCcceecccccCccccCccC
Confidence 56777789999999999999999998887778885
No 339
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=51.54 E-value=77 Score=28.32 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=46.0
Q ss_pred CCcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCC--------ceEEEEEccCCC-cchhhhhHHHHHHHH
Q 005581 387 GDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKR--------YKAAIIRIDSPG-GDALASDLMWREIRL 457 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~--------VkaVVLrinSpG-G~~~as~~i~~~I~~ 457 (690)
.+.+.|+++.|++.. ...+.+.+.+.+...... ++.|||....-- =+..+.+.+.+..+.
T Consensus 7 ~~~v~ii~~~g~l~f-----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~ 75 (117)
T PF01740_consen 7 HDGVLIIRLDGPLFF-----------ANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKE 75 (117)
T ss_dssp ETTEEEEEEESEESH-----------HHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHH
T ss_pred ECCEEEEEEeeEEEH-----------HHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHH
Confidence 368999999999984 357889999988887765 899999875421 233344555555555
Q ss_pred hc-CCCCE
Q 005581 458 LS-ESKPV 464 (690)
Q Consensus 458 l~-~~KPV 464 (690)
++ .+..+
T Consensus 76 ~~~~g~~~ 83 (117)
T PF01740_consen 76 LRRRGVQL 83 (117)
T ss_dssp HHHTTCEE
T ss_pred HHHCCCEE
Confidence 53 24444
No 340
>smart00245 TSPc tail specific protease. tail specific protease
Probab=50.46 E-value=1.1e+02 Score=30.50 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=57.2
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccC-CCcchhhhhHHHHHHHH---------
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-PGGDALASDLMWREIRL--------- 457 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinS-pGG~~~as~~i~~~I~~--------- 457 (690)
++|+.|.+..--. -+.+.+.++++++.+. +++++||.+-. +||.......+...+..
T Consensus 28 ~~igYi~i~~f~~------------~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~ 94 (192)
T smart00245 28 GNIGYIRIPEFSE------------HTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIY 94 (192)
T ss_pred CcEEEEEEeEECh------------hhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 5788888865211 1356777888888754 79999997743 77876555444333210
Q ss_pred --------h------cCCCCEEEEECccccHHHHHHHHhc
Q 005581 458 --------L------SESKPVIASMSDVAASGGYYMAMAA 483 (690)
Q Consensus 458 --------l------~~~KPVVa~v~g~AaSGGy~iA~aa 483 (690)
. +-.+||++.+++..+|++=.++.+-
T Consensus 95 ~~~~~~~~~~~~~~~~~~~pv~vL~~~~TaSaaE~~a~~l 134 (192)
T smart00245 95 RRTGELETYPANLGRKYSKPLVVLVNEGTASASEIFAGAL 134 (192)
T ss_pred cCCCceEEEecCCCcccCCCEEEEECCCCeeHHHHHHHHH
Confidence 0 0148999999999999999988876
No 341
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=49.56 E-value=1.1e+02 Score=34.95 Aligned_cols=193 Identities=10% Similarity=0.101 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhCCCceEEEEEccCCCcchh-hhhHHHHHHHHhcCCCCEEEEEC-ccccH----HHHHHHHhcC----
Q 005581 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDAL-ASDLMWREIRLLSESKPVIASMS-DVAAS----GGYYMAMAAG---- 484 (690)
Q Consensus 415 ~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~-as~~i~~~I~~l~~~KPVVa~v~-g~AaS----GGy~iA~aaD---- 484 (690)
.++|.+.+.++.++-+.++|++...++-+-+- --+.+.+++.. +-++|||.+-. |...+ -|+-+++-++
T Consensus 82 ~~~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~-~~gipVV~v~~~Gf~~~~tqg~d~~Laa~~~~~~~ 160 (457)
T CHL00073 82 YEELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEA-EIGIPIVVARANGLDYAFTQGEDTVLAAMAHRCPE 160 (457)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHH-hhCCCEEEEeCCCccCcCCcchhHHHHHhHHhhhh
Confidence 46888999999988899999998766533110 01222333321 12899998654 44422 5666666654
Q ss_pred eEEEecC-----------------------ceeccccccccc-----cchHHHHHHcCCceeee-cccchhhhhhc----
Q 005581 485 TILAENL-----------------------TLTGSIGVVTGK-----FNLGKLYEKIGFNKEII-SRGKYAEVLAA---- 531 (690)
Q Consensus 485 ~I~A~p~-----------------------t~~GSIGv~~~~-----~~~~~l~~klGi~~~~i-~~g~~~~~~~~---- 531 (690)
..+-+.. ....+|-+++.. ..+..+++++||++... ..+.+.++...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~G~~~~~~~~~i~~lL~~lGI~v~~~lp~~~~~eL~~~~~~~ 240 (457)
T CHL00073 161 QEVSTSESKETKQKTQSSLFSNKEKSLVKYKTHPPLVLFGSLPSTVASQLTLELKRQGIKVSGWLPSQRYTDLPSLGEGV 240 (457)
T ss_pred hhcCccccccccccccccccccccccccccCCCCcEEEEEecCcccHHHHHHHHHHcCCeEeEEeCCCCHHHHHhhCccc
Confidence 1222111 122334444443 45788999999998543 44566665421
Q ss_pred ---cCCCCChhHHHHHHHHHH------------HHHHHHHHHHHhhcCCCHHHHHHHhcCCcccHHHHHH---cC-Cccc
Q 005581 532 ---EQRPFRPDEAELFAKSAQ------------NAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAAS---RG-LVDA 592 (690)
Q Consensus 532 ---~~~~~s~~~~~~~~~~i~------------~~y~~F~~~Va~~R~~~~~~v~~l~~Grv~tg~eA~e---~G-LVD~ 592 (690)
...||.-.-...+++... +.-+.|+..+++--|+.++.+ +--.+|.|.+=+... .| =|-=
T Consensus 241 ~~c~~~P~ls~aa~~Le~~~gvp~~~~P~PiGi~~Td~fLr~Ia~~~G~~pe~l-~~Er~rl~dal~d~~~~L~GKrvai 319 (457)
T CHL00073 241 YVCGVNPFLSRTATTLMRRRKCKLIGAPFPIGPDGTRAWIEKICSVFGIEPQGL-EEREEQIWESLKDYLDLVRGKSVFF 319 (457)
T ss_pred EEEEcCcchHHHHHHHHHHhCCceeecCCcCcHHHHHHHHHHHHHHhCcCHHHH-HHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 233444455556655554 346788888888877766555 223355554322211 11 1112
Q ss_pred ccChHHHHHHHHHHcCC
Q 005581 593 LGGFSRAVAIAKQKANI 609 (690)
Q Consensus 593 ig~~~~ai~~a~~~a~l 609 (690)
.|+.+-++..++-+..+
T Consensus 320 ~Gdp~~~i~LarfL~el 336 (457)
T CHL00073 320 MGDNLLEISLARFLIRC 336 (457)
T ss_pred ECCCcHHHHHHHHHHHC
Confidence 35556666666655554
No 342
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=49.53 E-value=59 Score=34.43 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhh---hHHHHHHHHhcCCCCEEEEECccccHH
Q 005581 410 SSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALAS---DLMWREIRLLSESKPVIASMSDVAASG 475 (690)
Q Consensus 410 ~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as---~~i~~~I~~l~~~KPVVa~v~g~AaSG 475 (690)
+++..-+.+..+++-+..||.||+|++.|. ||-+.++ .-|..+.+++.-..|.|+-..|.-...
T Consensus 316 GGgV~EdqV~~Af~ilTaDPkVk~iLvNiF--GGIVNCAtIANGiv~A~~kl~LnVPlVVRLEGTNV~~ 382 (412)
T KOG1447|consen 316 GGGVKEDQVYQAFKILTADPKVKAILVNIF--GGIVNCATIANGIVKACRKLELNVPLVVRLEGTNVQE 382 (412)
T ss_pred cCcccHHHHHHHhhhhccCCceeEEEEehh--cceehhHhHhhHHHHHHHhhcCCCcEEEEEcCCCHHH
Confidence 455677889999999999999999999875 7766543 334555566656899999888765544
No 343
>PLN02235 ATP citrate (pro-S)-lyase
Probab=49.17 E-value=77 Score=35.91 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=56.3
Q ss_pred CcchHHHHHHHHHHHHH----hCCCceEEEEEccCCCcchhh---h---hHHHHHHHHhc-----CCCCEEEEECccccH
Q 005581 410 SSGIIGEQLIEKIRKVR----ESKRYKAAIIRIDSPGGDALA---S---DLMWREIRLLS-----ESKPVIASMSDVAAS 474 (690)
Q Consensus 410 ~~~~~~~~l~~~l~~a~----~D~~VkaVVLrinSpGG~~~a---s---~~i~~~I~~l~-----~~KPVVa~v~g~AaS 474 (690)
+++.+.+.+.++++-+. .|+++|+|++-|- ||-+.+ + +-|.++++.+. .++|||+-+.|.-.-
T Consensus 305 GG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIf--GGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~e 382 (423)
T PLN02235 305 SGAPNEEEVLQYARVVIDCATANPDGRKRALLIG--GGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQ 382 (423)
T ss_pred CCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEe--cccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHH
Confidence 45577888999888886 7999999999884 553322 1 44556666553 368999999998888
Q ss_pred HHHHHHH----hcC--eEEEecCc
Q 005581 475 GGYYMAM----AAG--TILAENLT 492 (690)
Q Consensus 475 GGy~iA~----aaD--~I~A~p~t 492 (690)
=|.-+.- -+. ..+..|.+
T Consensus 383 eG~~il~e~~~~~gl~i~~~~~~~ 406 (423)
T PLN02235 383 KGLAKMRALGEEIGVPIEVYGPEA 406 (423)
T ss_pred HHHHHHHHhHHhcCCcEEEeCCCC
Confidence 8876664 222 55555544
No 344
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=48.27 E-value=82 Score=35.20 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEc-CCCCCCHHHHHHHHHHH
Q 005581 163 SLPQICENFVKAAYDPRIVGIYLHI-EPLSCGWGKVEEIRRHV 204 (690)
Q Consensus 163 s~~~i~~~L~~Aa~D~~IkgVvL~i-~s~Gg~~~~~~eI~~aI 204 (690)
+..++.++|+++... +++++||++ +.+||.+..+..|.+.+
T Consensus 208 ~~~~~~~~l~~l~~~-~~~glIlDLR~N~GG~~~~a~~ia~~f 249 (389)
T PLN00049 208 ASSAVKEAIETLRAN-GVDAFVLDLRDNSGGLFPAGIEIAKLW 249 (389)
T ss_pred hHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 467888888888644 699999999 45677777777777766
No 345
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=47.85 E-value=1.1e+02 Score=27.72 Aligned_cols=66 Identities=11% Similarity=0.210 Sum_probs=48.0
Q ss_pred EEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCC-CCHHHHHHHHHHHHHHhhcCCeEE
Q 005581 141 VLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFII 215 (690)
Q Consensus 141 VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~G-g~~~~~~eI~~aI~~~r~sgKpVv 215 (690)
++++++.|.|+... ...+.+.+.+.....+.+.|+|++..-- -+-+.+..|...++..|..|...+
T Consensus 14 ~~vl~l~G~lD~~~---------a~~~~e~~~~~~~~~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~ 80 (117)
T COG1366 14 ILVLPLIGELDAAR---------APALKETLLEVIAASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELV 80 (117)
T ss_pred EEEEEeeEEEchHH---------HHHHHHHHHHHHhcCCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEE
Confidence 37999999998743 4567878876666667778999987753 455667778888888888765443
No 346
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=47.78 E-value=86 Score=33.32 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEECccccHHHHHHHHhcCeEEEec
Q 005581 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDVAASGGYYMAMAAGTILAEN 490 (690)
Q Consensus 415 ~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~aaD~I~A~p 490 (690)
.+..+..|..+++||.+||||+.-.-||- -.-.+.|++.+.+.-+ +.|..--==..|+..+|..+-..
T Consensus 47 ~EttIskI~~lAdDp~mKaIVv~q~vpGt-----~~af~kIkekRpDIl~---ia~~~~EDp~~i~~~aDi~~~~D 114 (275)
T PF12683_consen 47 QETTISKIVSLADDPDMKAIVVSQAVPGT-----AEAFRKIKEKRPDILL---IAGEPHEDPEVISSAADIVVNPD 114 (275)
T ss_dssp HHHHHHHHHGGGG-TTEEEEEEE-SS--------HHHHHHHHHH-TTSEE---EESS--S-HHHHHHHSSEEEE--
T ss_pred HHHHHHHHHHhccCCCccEEEEeCCCcch-----HHHHHHHHhcCCCeEE---EcCCCcCCHHHHhhccCeEeccc
Confidence 46778888889999999999998666642 1224445544333323 33333333445666666666544
No 347
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=45.43 E-value=2.8e+02 Score=32.98 Aligned_cols=219 Identities=16% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEecCcchhhhHHhhccCeeEecCCCeEEE
Q 005581 166 QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSL 245 (690)
Q Consensus 166 ~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~aas~gY~LAsaaD~I~a~p~~~vg~ 245 (690)
+..+.+..+..|+.+++|.|.+++.. ..+...++++.+ +.+||+|++-..-...+--.+..+---.+.
T Consensus 194 ~~~d~~~~~~~D~~tk~i~Ly~E~~~----~~r~fl~~a~~~-~~~kpii~lk~gr~~~~akAa~shTgslag------- 261 (598)
T COG1042 194 DESDLLEYLADDPRTKAIGLYIEGVK----DGRKFLNAARAA-ERKKPIIALKAGRSEAGAKAAASHTGSLAG------- 261 (598)
T ss_pred CchHhHHHHhhCccceEEEEEeccch----hHHHHHHHHHHH-hcCCCEEEEeccCCHHHHHHHhcccccccc-------
Q ss_pred eccceeccchhhhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHh
Q 005581 246 YGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIN 325 (690)
Q Consensus 246 ~Gv~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~Rg~~~~~v~~~~~ 325 (690)
.+..|+.......-.|..+.+++-+++.
T Consensus 262 ----------------------------------------------------~~~~y~Aa~~~agvir~~~~~elf~~~k 289 (598)
T COG1042 262 ----------------------------------------------------SDEAYDAAFKQAGVIRVESIEELFDAAK 289 (598)
T ss_pred ----------------------------------------------------cchhhHHHHHhhCceeccChHHHHHHHH
Q ss_pred cCcccHH-HHHhcCCeeEecchhHHHHHHHHHhCCCCCCCCCcccccccccccccccccCCCCCcEEEEEeecccccCCC
Q 005581 326 DGVYKVE-RLKEEGFITNVLYDDEVISMLKERLGVQKDKNLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRS 404 (690)
Q Consensus 326 ~~v~~a~-eAl~~GLID~i~~~de~~~~l~~~~g~~~~~~~~~v~~~~y~~~~~~~~~~~~~~~~IAvI~i~G~I~~~~~ 404 (690)
....... .--....|...+..--+...-....|++ +...+-......+.......+ +.++++
T Consensus 290 ~l~~~~~~~g~~~~ivtn~Gg~gvla~D~l~~~g~~----l~~~~~~~~~~l~~~Lp~~~~---------~~NPvD---- 352 (598)
T COG1042 290 ALSHQPPPAGDRVAIITNGGGPGVLAADALEERGLK----LAELSEETIEKLRSRLPPHAS---------VKNPVD---- 352 (598)
T ss_pred HhccCCCCCCcceeEEecCCCccccchhHHHHcCCC----cCCCCHHHHHHHHhhcCcccc---------ccCCee----
Q ss_pred CCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHH--HHhcCCCC-EEEEECc
Q 005581 405 PLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREI--RLLSESKP-VIASMSD 470 (690)
Q Consensus 405 ~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I--~~l~~~KP-VVa~v~g 470 (690)
-.+....+...+.++....|+++.++++ +.+|+......+.-...+ ...+.+|| |+++|+|
T Consensus 353 ----~~~~a~~e~y~~~~~~~~~~~~~~~llv-i~~~~~~~~~~~~a~~~~~~~~~~~~k~~v~~~~gg 416 (598)
T COG1042 353 ----LTGDADAERYKKTLEILLRDENVDALLV-IVLPPASADPEETAEAIIRATAKKRGKPVVVSSMGG 416 (598)
T ss_pred ----eecCCcHHHHHHHHHHHHhccCCceEEE-EecCCCCCCchhhhHHHHHhhhhhCCCceEEEecCC
No 348
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=44.98 E-value=46 Score=36.61 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 163 s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
|++-+++-|++|+.||+|.+|=+.+=-.+..- .|.++|.+..+.||-|.++++
T Consensus 19 sf~~vv~fl~eAA~DP~V~aIk~TLYR~a~~S----~iv~aLi~AA~nGK~Vtv~vE 71 (352)
T PF13090_consen 19 SFDPVVDFLREAAEDPDVLAIKITLYRVASNS----PIVNALIEAAENGKQVTVLVE 71 (352)
T ss_dssp -TCHHHHHHHHHCC-TTEEEEEEEESSS-TT-----HHHHHHHHHHHTT-EEEEEES
T ss_pred ccHHHHHHHHHHhcCCCccEEEEEEEecCCCC----HHHHHHHHHHHcCCEEEEEEE
Confidence 45679999999999999999988775444332 344555555567999999997
No 349
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=43.96 E-value=1.1e+02 Score=33.27 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEcC-CCCCCHHHHHHHHHHHHH----------------Hh-----hcCCeEEEEec-
Q 005581 163 SLPQICENFVKAAYDPRIVGIYLHIE-PLSCGWGKVEEIRRHVVD----------------FK-----KSGKFIIGYVP- 219 (690)
Q Consensus 163 s~~~i~~~L~~Aa~D~~IkgVvL~i~-s~Gg~~~~~~eI~~aI~~----------------~r-----~sgKpVvAy~~- 219 (690)
..+++.++++++.. .+++++||++- .+||.+..+..+...+.. +. ...+||+..++
T Consensus 165 ~~~~~~~~l~~l~~-~~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pv~vLvn~ 243 (334)
T TIGR00225 165 TTEDVKKALDKLEK-KNAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQPYNLPLVVLVNR 243 (334)
T ss_pred hHHHHHHHHHHHHh-ccCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCccCCCCEEEEECC
Confidence 45678888888753 57999999994 567778887777776531 00 02468888887
Q ss_pred CcchhhhHHhhc
Q 005581 220 VCGEKEYYLACA 231 (690)
Q Consensus 220 ~aas~gY~LAsa 231 (690)
..+|++=.+|.+
T Consensus 244 ~TaSaaE~~a~~ 255 (334)
T TIGR00225 244 GSASASEIFAGA 255 (334)
T ss_pred CCCcHHHHHHHH
Confidence 455554444443
No 350
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=43.45 E-value=3.6e+02 Score=28.44 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581 181 VGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 181 kgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
.++++-+|...|--.+.+.+.+. .++.++|++.+++
T Consensus 89 D~ailVVDa~~g~~~~t~~~~~~---~~~~~~p~ivviN 124 (270)
T cd01886 89 DGAVAVFDAVAGVEPQTETVWRQ---ADRYNVPRIAFVN 124 (270)
T ss_pred CEEEEEEECCCCCCHHHHHHHHH---HHHcCCCEEEEEE
Confidence 36677777765544555555444 4466899999997
No 351
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=41.67 E-value=1.1e+02 Score=27.07 Aligned_cols=60 Identities=25% Similarity=0.341 Sum_probs=37.3
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccC-CCcchhhhhHHHHHHHHh
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDS-PGGDALASDLMWREIRLL 458 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinS-pGG~~~as~~i~~~I~~l 458 (690)
+.+.|++++|++.. ...+.+.+.+.........+.|||+... +-=+..+...+.+.++.+
T Consensus 9 ~~~~v~~l~G~L~~-----------~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~ 69 (109)
T cd07041 9 DGVLVLPLIGDLDD-----------ERAEQLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARAL 69 (109)
T ss_pred CCEEEEeeeeeECH-----------HHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHH
Confidence 56899999999984 2356777766554444577899997742 111223344555555554
No 352
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=40.65 E-value=1.6e+02 Score=25.59 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=41.3
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCc-chhhhhHHHHHHHHhc-CCCCEE
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGG-DALASDLMWREIRLLS-ESKPVI 465 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG-~~~as~~i~~~I~~l~-~~KPVV 465 (690)
+.+.+++++|++.- ...+.+.+.+..+..++..+.|||+...-.- +..+...+....+.++ .++.++
T Consensus 7 ~~v~ii~~~G~l~f-----------~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgl~~L~~l~~~~~~~g~~l~ 75 (100)
T cd06844 7 DDYWVVRLEGELDH-----------HSVEQFKEELLHNITNVAGKTIVIDISALEFMDSSGTGVLLERSRLAEAVGGQFV 75 (100)
T ss_pred CCEEEEEEEEEecH-----------hhHHHHHHHHHHHHHhCCCCEEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEE
Confidence 57999999999873 2356777777665555678899997642111 2233444555555543 244443
No 353
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=40.59 E-value=69 Score=35.59 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHH-hhcC--CeEEEEec
Q 005581 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDF-KKSG--KFIIGYVP 219 (690)
Q Consensus 161 ~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~-r~sg--KpVvAy~~ 219 (690)
..+...+.++|+...+||++++|++.+- | +......+.+.|.+. ++.+ |||++...
T Consensus 292 ~a~~~~~~~al~~l~~dp~vd~ilv~i~--g-g~~~~~~va~~i~~a~~~~~~~kPvvv~~~ 350 (386)
T TIGR01016 292 GASAERVREALKLVLSDKSVKVVFINIF--G-GITRCDLVAKGLVEALKEVGVNVPVVVRLE 350 (386)
T ss_pred CCCHHHHHHHHHHHHcCCCCCEEEEECC--C-CCCCHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 3567889999999999999999997444 3 332234455554443 3345 89966553
No 354
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=39.92 E-value=68 Score=35.96 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHH-hh--cCCeEEEEe
Q 005581 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDF-KK--SGKFIIGYV 218 (690)
Q Consensus 161 ~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~-r~--sgKpVvAy~ 218 (690)
..+.+.+.++|+...+||+|++|++.+- | +.....++.+.|.+. ++ .+|||++..
T Consensus 292 ~a~~e~~~~aL~~ll~Dp~VdaVlv~i~--g-gi~~~~~vA~~Ii~a~~~~~~~kPvvv~l 349 (392)
T PRK14046 292 GASPERVAKAFRLVLSDRNVKAILVNIF--A-GINRCDWVAEGVVQAAREVGIDVPLVVRL 349 (392)
T ss_pred CCCHHHHHHHHHHHHcCCCCCEEEEEcC--C-CCCCHHHHHHHHHHHHHhcCCCCcEEEEc
Confidence 3567889999999999999999997555 3 333334455555543 23 578996544
No 355
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=39.17 E-value=2.6e+02 Score=31.47 Aligned_cols=107 Identities=11% Similarity=0.106 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHh-hcCCeEEEEec-Ccc----hhhhHHhhc--cCee
Q 005581 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFK-KSGKFIIGYVP-VCG----EKEYYLACA--CEEL 235 (690)
Q Consensus 164 ~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r-~sgKpVvAy~~-~aa----s~gY~LAsa--aD~I 235 (690)
.+.|.++|+++.+.-+.++|+|--....+-. .+.|...+++++ +.++||+.+-. .+. +.||..+.. .+.+
T Consensus 74 ~~kL~~aI~~~~~~~~P~~I~V~ttC~~~iI--GdDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~~al~~~~ 151 (426)
T cd01972 74 EKKLEDTIKEAYSRYKPKAIFVATSCATGII--GDDVESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAFHGILRHL 151 (426)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCChHHHh--ccCHHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHHHHHHHHh
Confidence 4678899998876555677777544321100 022333344443 35899987543 332 256666542 2222
Q ss_pred Eec-----CCCeEEEecccee--------ccchhhhhhhcCceeEEEeec
Q 005581 236 YAP-----PSAYFSLYGLTVQ--------ASFLGGVLEKVGIEPQVQRIG 272 (690)
Q Consensus 236 ~a~-----p~~~vg~~Gv~~~--------~~~~k~lLeKlGI~~~~~~~G 272 (690)
.-. +...+.++|.... ..-++.+|+++|+++..+-.|
T Consensus 152 ~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~ 201 (426)
T cd01972 152 VPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAG 201 (426)
T ss_pred cCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCC
Confidence 211 2235888887643 244899999999999776554
No 356
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=38.58 E-value=57 Score=29.78 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=36.3
Q ss_pred HHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEEEEC
Q 005581 420 EKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS 469 (690)
Q Consensus 420 ~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa~v~ 469 (690)
+.+.-+..+++|-|||+..+ ++.......+.+.|+....+.||.....
T Consensus 28 d~~~~i~~~~~i~avvi~~d--~~~~~~~~~ll~~i~~~~~~iPVFl~~~ 75 (115)
T PF03709_consen 28 DALAIIESFTDIAAVVISWD--GEEEDEAQELLDKIRERNFGIPVFLLAE 75 (115)
T ss_dssp HHHHHHHCTTTEEEEEEECH--HHHHHHHHHHHHHHHHHSTT-EEEEEES
T ss_pred HHHHHHHhCCCeeEEEEEcc--cccchhHHHHHHHHHHhCCCCCEEEEec
Confidence 34556678999999999998 4444456677888888888999999766
No 357
>PF13466 STAS_2: STAS domain
Probab=37.79 E-value=1.5e+02 Score=24.44 Aligned_cols=62 Identities=8% Similarity=0.129 Sum_probs=45.1
Q ss_pred EEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCC-CCHHHHHHHHHHHHHHhhcCCeEEE
Q 005581 144 MKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIG 216 (690)
Q Consensus 144 I~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~G-g~~~~~~eI~~aI~~~r~sgKpVvA 216 (690)
|.+.|+++-. +..++.+.+.++..++ +-|+|++..-. .+.+..+-|....+..++.|+++..
T Consensus 1 l~l~G~l~~~---------~~~~l~~~l~~~~~~~--~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l 63 (80)
T PF13466_consen 1 LRLSGELDIA---------TAPELRQALQALLASG--RPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRL 63 (80)
T ss_pred CEEEEEEeHH---------HHHHHHHHHHHHHcCC--CeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3566776642 4567888888887555 78899987764 6677778888888888777777654
No 358
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=37.04 E-value=67 Score=38.61 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
-|++-+++.|++|+.||+|..|-+.+=-.+.+ ..|.++|.+..+.||-|.+.++
T Consensus 339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~~~----s~ii~aL~~Aa~~Gk~V~v~ve 392 (672)
T TIGR03705 339 ESFDPVVEFLRQAAEDPDVLAIKQTLYRTSKD----SPIIDALIEAAENGKEVTVVVE 392 (672)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEEEEecCC----cHHHHHHHHHHHcCCEEEEEEE
Confidence 56788999999999999999988755433322 4566777777778999999998
No 359
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=36.90 E-value=84 Score=34.96 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHh-h--cCCeEEEEe
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFK-K--SGKFIIGYV 218 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r-~--sgKpVvAy~ 218 (690)
.+.+.+.+.|+...+||++.+|++.+- + +......+.+.|.++. + .+|||++..
T Consensus 293 ~~~e~~~~aL~~l~~d~~vd~vlv~~~--~-~~~~~~~va~~i~~~~~~~~~~kPvv~~~ 349 (388)
T PRK00696 293 ATAERVAEAFKIILSDPNVKAILVNIF--G-GITRCDVIAEGIIAAVKEVGVTVPLVVRL 349 (388)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEEeC--C-CCCCHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 556778899999999999999997544 2 3333355555555543 3 589996554
No 360
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=36.70 E-value=2.1e+02 Score=24.10 Aligned_cols=65 Identities=11% Similarity=0.179 Sum_probs=41.6
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEccCCCc-chhhhhHHHHHHHHhcC-CCCE
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGG-DALASDLMWREIRLLSE-SKPV 464 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG-~~~as~~i~~~I~~l~~-~KPV 464 (690)
+.+.++.+.|++... ..+.+.+.+.++.+++ .+.|+|....-.. +..+...+.+.++.++. ++.+
T Consensus 7 ~~~~ii~l~G~l~~~-----------~~~~~~~~~~~~~~~~-~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~v 73 (99)
T cd07043 7 GGVLVVRLSGELDAA-----------TAPELREALEELLAEG-PRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGRL 73 (99)
T ss_pred CCEEEEEEeceeccc-----------chHHHHHHHHHHHHcC-CCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCeE
Confidence 578999999998742 2456777777666554 7889998754222 33445666666666633 4444
No 361
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=36.46 E-value=1.1e+02 Score=33.24 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhCCCceEEEEEccC---CCcchhhh--hHHHHHHHHhc--CCCCEEEEEC----ccccHHHHHHHHhc
Q 005581 415 GEQLIEKIRKVRESKRYKAAIIRIDS---PGGDALAS--DLMWREIRLLS--ESKPVIASMS----DVAASGGYYMAMAA 483 (690)
Q Consensus 415 ~~~l~~~l~~a~~D~~VkaVVLrinS---pGG~~~as--~~i~~~I~~l~--~~KPVVa~v~----g~AaSGGy~iA~aa 483 (690)
..++...++++. +..++.|-+.| |||..++. +.+.+.++.++ .++||.+=+. ++..-+....-..+
T Consensus 111 ~~d~~~~~~~~~---~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~ 187 (310)
T COG0167 111 WADYARLLEEAG---DADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGA 187 (310)
T ss_pred HHHHHHHHHhcC---CCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCC
Confidence 455555555554 27789998866 56766652 23333333432 3799988665 66677777888888
Q ss_pred CeEEEecCceecc
Q 005581 484 GTILAENLTLTGS 496 (690)
Q Consensus 484 D~I~A~p~t~~GS 496 (690)
|-+++..++.-|+
T Consensus 188 Dgl~~~NT~~~~~ 200 (310)
T COG0167 188 DGLIAINTTKSGM 200 (310)
T ss_pred cEEEEEeeccccc
Confidence 9999999887665
No 362
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=36.30 E-value=63 Score=29.56 Aligned_cols=55 Identities=9% Similarity=-0.033 Sum_probs=30.3
Q ss_pred HHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEecC-cchhhhHH
Q 005581 171 FVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPV-CGEKEYYL 228 (690)
Q Consensus 171 L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~-aas~gY~L 228 (690)
++++++.-.+.-+.+=+....-.....+.++++|. +.+|||.+|+.. .-++..|.
T Consensus 49 ~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~---~~~~Pvl~hC~sG~Ra~~l~~ 104 (110)
T PF04273_consen 49 EAAAAEALGLQYVHIPVDGGAITEEDVEAFADALE---SLPKPVLAHCRSGTRASALWA 104 (110)
T ss_dssp HHHHHHHCT-EEEE----TTT--HHHHHHHHHHHH---TTTTSEEEE-SCSHHHHHHHH
T ss_pred HHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHH---hCCCCEEEECCCChhHHHHHH
Confidence 44444445788888877776655666667776666 567999999984 43444443
No 363
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=36.28 E-value=1.1e+02 Score=31.21 Aligned_cols=86 Identities=10% Similarity=0.092 Sum_probs=53.1
Q ss_pred ccccccCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-CCCCHHHHHHHHHHHHH----
Q 005581 132 PWERVRKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVD---- 206 (690)
Q Consensus 132 p~~~~~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-~Gg~~~~~~eI~~aI~~---- 206 (690)
|..+...+ |+.|.+..- .. -+.+++.++|+++.+. +++++||++-. +||....+..|...+..
T Consensus 42 ~~~~~~~~-igYi~i~sf-~~---------~~~~~~~~~l~~~~~~-~~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~ 109 (211)
T cd07560 42 PYSRYLTP-IGYIRITSF-SE---------NTAEELKKALKELKKQ-GMKGLILDLRNNPGGLLDEAVEIADLFLPGGPI 109 (211)
T ss_pred CcceeeCc-eEEEEEccc-Cc---------hhHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCeE
Confidence 44444333 778887753 21 2356788888887644 59999999954 56666767766654442
Q ss_pred --Hh---------------hcCCeEEEEec-CcchhhhHHh
Q 005581 207 --FK---------------KSGKFIIGYVP-VCGEKEYYLA 229 (690)
Q Consensus 207 --~r---------------~sgKpVvAy~~-~aas~gY~LA 229 (690)
++ ...+||+..++ ..+|++=.+|
T Consensus 110 ~~~~~~~g~~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a 150 (211)
T cd07560 110 VSTKGRNGKREAYASDDGGLYDGPLVVLVNGGSASASEIVA 150 (211)
T ss_pred EEEEecCCceEEEecCCCccCCCCEEEEeCCCcccHHHHHH
Confidence 00 12578888887 4455543333
No 364
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=36.08 E-value=3.6e+02 Score=30.91 Aligned_cols=104 Identities=12% Similarity=0.062 Sum_probs=58.4
Q ss_pred CCeEEEEecCcc--hhhhHHhhccCeeEecCCCeEEEeccc----eeccchhhhhh----------------hcCceeEE
Q 005581 211 GKFIIGYVPVCG--EKEYYLACACEELYAPPSAYFSLYGLT----VQASFLGGVLE----------------KVGIEPQV 268 (690)
Q Consensus 211 gKpVvAy~~~aa--s~gY~LAsaaD~I~a~p~~~vg~~Gv~----~~~~~~k~lLe----------------KlGI~~~~ 268 (690)
..||+|-..... +.+..++..||-|++-. +-+. .....+|++|- .+|+++++
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT------~flat~Esgas~~~K~~L~~a~~~DT~~ap~~dmfe~G~~~qv 297 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLGADFIVTGS------VNQCTVEAGTSDNVKKLLAKADVQDTAYAPAGDMFELGVKLQV 297 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcCCcEEEecc------HHHhCccccCCHHHHHHHHhCCCcCeEEecCccccccCceeee
Confidence 468998887443 45777888898887632 1111 11233444442 46888999
Q ss_pred EeeccccccC---------CcccCCCCCHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 005581 269 QRIGKYKSAG---------DQLTRKTMSEENCEMLT-----ALLDNIYGNWLDKVSSTKGKRKEDIER 322 (690)
Q Consensus 269 ~~~G~yKsa~---------ep~~~~~~S~e~re~~~-----~~ld~~~~~f~~~Va~~Rg~~~~~v~~ 322 (690)
.+.|.+=.+- .--+.+...+..|++++ .-++++|++-..... .|+ +++++++
T Consensus 298 lkrg~~f~~ra~kl~~ly~~~~s~~~i~~~~~~~~e~~~f~~~~~~vw~~~~~~~~-~~~-~p~~~~~ 363 (444)
T TIGR02814 298 LKRGTLFPARANKLYELYRRYDSLEALPAATRAQLEKKYFKRSLDDVWEETRAYYI-GRH-DPAEIER 363 (444)
T ss_pred eccccCcHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHhcCCHHHHHHHHHHHHh-ccC-CHHHHHh
Confidence 9988521110 00112567788877776 456777776443322 222 5555543
No 365
>PRK11186 carboxy-terminal protease; Provisional
Probab=36.08 E-value=2e+02 Score=34.69 Aligned_cols=42 Identities=7% Similarity=0.099 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEcC-CCCCCHHHHHHHHHHHH
Q 005581 163 SLPQICENFVKAAYDPRIVGIYLHIE-PLSCGWGKVEEIRRHVV 205 (690)
Q Consensus 163 s~~~i~~~L~~Aa~D~~IkgVvL~i~-s~Gg~~~~~~eI~~aI~ 205 (690)
...++.++|+++.. .+++|+||++- .+||.+..+..|...+.
T Consensus 367 ~~~d~~~~l~~l~~-~~v~gLIlDLR~NgGG~l~~a~~la~lFi 409 (667)
T PRK11186 367 LTDDVKKQLQKLEK-QNVSGIIIDLRGNGGGALTEAVSLSGLFI 409 (667)
T ss_pred hHHHHHHHHHHHHH-CCCCEEEEEcCCCCCCcHHHHHHHHHHHh
Confidence 36788888988864 57999999994 56677788887777643
No 366
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=35.04 E-value=94 Score=34.58 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHh-c---CCCCEEEEECc
Q 005581 413 IIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLL-S---ESKPVIASMSD 470 (690)
Q Consensus 413 ~~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l-~---~~KPVVa~v~g 470 (690)
...+.+.+.|+.+.+|+++++|++-+. ||.. ..+.+.+.|.+. + .+|||++.+.|
T Consensus 293 ~~~e~~~~aL~~l~~d~~vd~vlv~~~--~~~~-~~~~va~~i~~~~~~~~~~kPvv~~~~g 351 (388)
T PRK00696 293 ATAERVAEAFKIILSDPNVKAILVNIF--GGIT-RCDVIAEGIIAAVKEVGVTVPLVVRLEG 351 (388)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEEeC--CCCC-CHHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 457888899999999999999997433 4432 224455555432 2 47999887766
No 367
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=34.81 E-value=62 Score=29.54 Aligned_cols=49 Identities=6% Similarity=0.005 Sum_probs=32.0
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581 168 CENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 168 ~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
-+.+.-+.++++|.||+|..+ +.......++-+.|+.. +-+.||..+++
T Consensus 27 dd~~~~i~~~~~i~avvi~~d--~~~~~~~~~ll~~i~~~-~~~iPVFl~~~ 75 (115)
T PF03709_consen 27 DDALAIIESFTDIAAVVISWD--GEEEDEAQELLDKIRER-NFGIPVFLLAE 75 (115)
T ss_dssp HHHHHHHHCTTTEEEEEEECH--HHHHHHHHHHHHHHHHH-STT-EEEEEES
T ss_pred HHHHHHHHhCCCeeEEEEEcc--cccchhHHHHHHHHHHh-CCCCCEEEEec
Confidence 345555677899999999998 32333334454455443 35789999998
No 368
>PLN02235 ATP citrate (pro-S)-lyase
Probab=34.03 E-value=80 Score=35.77 Aligned_cols=61 Identities=11% Similarity=-0.101 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHhh----cCCCceEEEEEcCCC--CCCHHHH--HHHHHHHHHHhh----cCCeEEEEec
Q 005581 159 SSGLSLPQICENFVKAA----YDPRIVGIYLHIEPL--SCGWGKV--EEIRRHVVDFKK----SGKFIIGYVP 219 (690)
Q Consensus 159 ~~~~s~~~i~~~L~~Aa----~D~~IkgVvL~i~s~--Gg~~~~~--~eI~~aI~~~r~----sgKpVvAy~~ 219 (690)
+++.+..++.++++-.. .||++++|+|.|-+. .++.-++ +-|.++++++.. ..+|||+-..
T Consensus 305 GG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~ 377 (423)
T PLN02235 305 SGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRG 377 (423)
T ss_pred CCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECC
Confidence 35688999999999887 799999999988421 1222222 567777777642 4689987766
No 369
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=33.53 E-value=70 Score=30.36 Aligned_cols=67 Identities=10% Similarity=-0.049 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcCC-CCCCHHHHHHHHHHHHHH-------------h-------------hcCCeEEE
Q 005581 164 LPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDF-------------K-------------KSGKFIIG 216 (690)
Q Consensus 164 ~~~i~~~L~~Aa~D~~IkgVvL~i~s-~Gg~~~~~~eI~~aI~~~-------------r-------------~sgKpVvA 216 (690)
...+.+.++++.+ .+++++||++.. +||....+..+...+..- . .-.+||+.
T Consensus 17 ~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 95 (169)
T PF03572_consen 17 DEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPVYV 95 (169)
T ss_dssp HHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEEEE
T ss_pred HHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCEEE
Confidence 3556666777664 679999999954 677777777776655420 0 13578999
Q ss_pred Eec-CcchhhhHHhhc
Q 005581 217 YVP-VCGEKEYYLACA 231 (690)
Q Consensus 217 y~~-~aas~gY~LAsa 231 (690)
.++ .++|++=+++.+
T Consensus 96 L~~~~t~Saae~fa~~ 111 (169)
T PF03572_consen 96 LTDENTASAAEIFASA 111 (169)
T ss_dssp EE-TTBBTHHHHHHHH
T ss_pred EeCCCCCChhHHHHHH
Confidence 988 677766555554
No 370
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=33.41 E-value=2.3e+02 Score=24.61 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=30.9
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID 439 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin 439 (690)
+.+.+|++.|.+... ....+.+.+.++..++..+.|++...
T Consensus 11 ~~~~vi~~~G~l~~~-----------~~~~~~~~l~~~~~~~~~~~vvidls 51 (108)
T TIGR00377 11 EGVVIVRLSGELDAH-----------TAPLLREKVTPAAERTGPRPIVLDLE 51 (108)
T ss_pred CCEEEEEEecccccc-----------cHHHHHHHHHHHHHhcCCCeEEEECC
Confidence 679999999999842 25677777777766567888999653
No 371
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=33.20 E-value=1.2e+02 Score=33.94 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHhhcCCCceEEEEEcCCC--CCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581 160 SGLSLPQICENFVKAAYDPRIVGIYLHIEPL--SCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 160 ~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~--Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
++.+.+.+.++++-...||++|+|++.|=+. .++. -++-|.++++++. ..+|+|+-.+
T Consensus 290 GgA~~e~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~-vA~GIi~Al~e~~-~~vPlVVRL~ 349 (387)
T COG0045 290 GGATAERVKEAFKLILSDPNVKAIFVNIFGGITRCDE-VAEGIIAALKEVG-VNVPLVVRLE 349 (387)
T ss_pred CCCCHHHHHHHHHHHhcCCCccEEEEEEccCcCccHH-HHHHHHHHHHhcC-CCCCEEEEcC
Confidence 5788999999999999999999999987432 2333 5566777777764 4689988776
No 372
>PRK05443 polyphosphate kinase; Provisional
Probab=33.05 E-value=82 Score=38.02 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEecCcc---h------hhhHHhhcc
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCG---E------KEYYLACAC 232 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~aa---s------~gY~LAsaa 232 (690)
-|++-+++.|++|+.||+|.+|-+.+=-.+.+ ..|.++|.+..+.||-|.+.++.-+ . +.-+....|
T Consensus 348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~----s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv 423 (691)
T PRK05443 348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTSKD----SPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGV 423 (691)
T ss_pred cCchHHHHHHHHhccCCCeeEEEEEEEEecCC----HHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCC
Confidence 46788999999999999999988765444333 5667777777778999999998211 1 123344566
Q ss_pred CeeEecCC
Q 005581 233 EELYAPPS 240 (690)
Q Consensus 233 D~I~a~p~ 240 (690)
..||--|.
T Consensus 424 ~V~y~~~~ 431 (691)
T PRK05443 424 HVVYGVVG 431 (691)
T ss_pred EEEEccCC
Confidence 66674443
No 373
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=32.81 E-value=1.7e+02 Score=32.93 Aligned_cols=107 Identities=16% Similarity=0.221 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhc--CCCCEEEEE-Cccc---cHHHHHHHHhc--CeE
Q 005581 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLS--ESKPVIASM-SDVA---ASGGYYMAMAA--GTI 486 (690)
Q Consensus 415 ~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~--~~KPVVa~v-~g~A---aSGGy~iA~aa--D~I 486 (690)
.+.|.++|+++.+.-+-++|++-..+.-+ .-.+.+-..+++++ -++|||..= .|.. ..-||..++.+ +..
T Consensus 74 ~~kL~~aI~~~~~~~~P~~I~V~ttC~~~--iIGdDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~~al~~~~ 151 (426)
T cd01972 74 EKKLEDTIKEAYSRYKPKAIFVATSCATG--IIGDDVESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAFHGILRHL 151 (426)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCChHH--HhccCHHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHHHHHHHHh
Confidence 47899999999876566777776544211 11222222333332 278888743 2332 34678877654 323
Q ss_pred EEe--cCceecccccccccc-----------chHHHHHHcCCceeeeccc
Q 005581 487 LAE--NLTLTGSIGVVTGKF-----------NLGKLYEKIGFNKEIISRG 523 (690)
Q Consensus 487 ~A~--p~t~~GSIGv~~~~~-----------~~~~l~~klGi~~~~i~~g 523 (690)
.-. +...-++|-+++..+ .+..+++++|+++..+-.+
T Consensus 152 ~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~ 201 (426)
T cd01972 152 VPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAG 201 (426)
T ss_pred cCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCC
Confidence 221 222334444444332 2778899999998777654
No 374
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=32.52 E-value=1.4e+02 Score=31.48 Aligned_cols=58 Identities=5% Similarity=-0.063 Sum_probs=41.9
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcC-CCCCCHHHHHHHHHHHH
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIE-PLSCGWGKVEEIRRHVV 205 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~-s~Gg~~~~~~eI~~aI~ 205 (690)
..+.|..|.++.=.. .+.+++.++++++.+. +++++||++- .+||.+..+..|...+.
T Consensus 62 ~~~~IGYi~i~~F~~----------~~~~~l~~a~~~l~~~-~~~~LIlDLR~N~GG~~~~a~~las~f~ 120 (256)
T cd07561 62 GGKKVGYLVYNSFTS----------GYDDELNQAFAEFKAQ-GVTELVLDLRYNGGGLVSSANLLASLLA 120 (256)
T ss_pred CCCcEEEEEECcccc----------chHHHHHHHHHHHHHc-CCCeEEEEeCCCCCccHHHHHHHHHHhc
Confidence 456788888875321 1346788888888643 7999999994 56777788888877766
No 375
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=31.86 E-value=1.2e+02 Score=34.54 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHH----HHHHHHHHhhcCCeEEEEec
Q 005581 160 SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEE----IRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 160 ~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~e----I~~aI~~~r~sgKpVvAy~~ 219 (690)
++.+..++.++++-...||+||+|++.|= ||...+.. |.++++++ ...+|+|+-..
T Consensus 326 G~a~~~~v~~a~~ii~~d~~vk~iliNIf---GGI~~cd~iA~gii~a~~~~-~~~~pivvRl~ 385 (422)
T PLN00124 326 GNASEQQVVEAFKILTSDDKVKAILVNIF---GGIMKCDVIASGIVNAAKQV-GLKVPLVVRLE 385 (422)
T ss_pred CCCCHHHHHHHHHHHhcCCCCcEEEEEec---CCccchHHHHHHHHHHHHhc-CCCCcEEEEcC
Confidence 56888999999999999999999999875 44444444 44444443 24688888766
No 376
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=31.68 E-value=2.3e+02 Score=29.72 Aligned_cols=82 Identities=7% Similarity=0.053 Sum_probs=45.4
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHH-------hh
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDF-------KK 209 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~-------r~ 209 (690)
..+.|..|.|..- .+ .++.++.+.+... .+++|+||++-.-+||. -+..|...+... |.
T Consensus 85 ~~~~igYi~i~~~-~~---------~~~~~~~~~~~~~---~~~~glIiDlR~N~GG~-~~~~l~~~~~~~~~~~~~~r~ 150 (266)
T cd07562 85 SDGRIGYVHIPDM-GD---------DGFAEFLRDLLAE---VDKDGLIIDVRFNGGGN-VADLLLDFLSRRRYGYDIPRG 150 (266)
T ss_pred cCCcEEEEEeCCC-Ch---------HHHHHHHHHHHhc---CCCceEEEEecCCCCCc-HHHHHHHHhCCCceEEEccCC
Confidence 3478999988754 11 1244444444433 33899999996655554 223333332110 10
Q ss_pred -----------cCCeEEEEec-CcchhhhHHhhcc
Q 005581 210 -----------SGKFIIGYVP-VCGEKEYYLACAC 232 (690)
Q Consensus 210 -----------sgKpVvAy~~-~aas~gY~LAsaa 232 (690)
-.+||+..++ .++|++=.++.++
T Consensus 151 ~~~~~~~p~~~~~~pv~vL~~~~t~SaaE~~a~~l 185 (266)
T cd07562 151 GGKPVTYPSGRWRGPVVVLVNEGSASDAEIFAYGF 185 (266)
T ss_pred CCCCCCCcccccCCCEEEEECCCCCchHHHHHHHH
Confidence 1478888888 5666655555443
No 377
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=30.59 E-value=2.9e+02 Score=24.09 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=31.1
Q ss_pred CcEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEcc
Q 005581 388 DQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRID 439 (690)
Q Consensus 388 ~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLrin 439 (690)
+.+.|+++.|++.- ...+.+.+.+.++-..++.+.|+|+..
T Consensus 7 ~~~~vi~l~G~L~f-----------~~~~~~~~~l~~~~~~~~~~~vilDls 47 (106)
T TIGR02886 7 GDVLIVRLSGELDH-----------HTAERVRRKIDDAIERRPIKHLILNLK 47 (106)
T ss_pred CCEEEEEEecccch-----------hhHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 67999999999984 236778888777655456889999653
No 378
>PRK02929 L-arabinose isomerase; Provisional
Probab=29.38 E-value=2.3e+02 Score=32.96 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 163 s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
+.+++.+.++++.+|+++.||++.+-+++.+-. +...++ ..+|||+-+..
T Consensus 56 ~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~----~i~~~~---~l~~PvL~~~~ 105 (499)
T PRK02929 56 TPDEITAVCREANYDDNCAGVITWMHTFSPAKM----WIRGLS---ALQKPLLHLHT 105 (499)
T ss_pred CHHHHHHHHHHccccCCCcEEEEccCCCchHHH----HHHHHH---HcCCCEEEEec
Confidence 356788999999889999999999888774322 222233 34577765543
No 379
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=28.89 E-value=2.6e+02 Score=26.78 Aligned_cols=72 Identities=14% Similarity=0.018 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEecCcc-hhhhHHhhccCeeEecC
Q 005581 161 GLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCG-EKEYYLACACEELYAPP 239 (690)
Q Consensus 161 ~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~aa-s~gY~LAsaaD~I~a~p 239 (690)
.++.+++.+.|++.. +.+.+|++. ||. .+.+.+.+.++.+|+.|.++..+.+... ..---++...|.+.+.|
T Consensus 45 ~lt~eel~~~I~~~~--~~~~gVt~S----GGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD~l~~g~ 117 (147)
T TIGR02826 45 KLTPEYLTKTLDKYR--SLISCVLFL----GGE-WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLDYLKTGR 117 (147)
T ss_pred CCCHHHHHHHHHHhC--CCCCEEEEe----chh-cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCCEEEECh
Confidence 478889999998875 347888885 555 5667888899999888888865543211 11113345567777766
No 380
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=28.87 E-value=5e+02 Score=30.91 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCC-CCHHHHHHHHHHHHHHhhcCCeEEEEec---CcchhhhHHhh--ccCee
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIGYVP---VCGEKEYYLAC--ACEEL 235 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~G-g~~~~~~eI~~aI~~~r~sgKpVvAy~~---~aas~gY~LAs--aaD~I 235 (690)
.+++.+++..+++.+ -.+..|.| -|+.| ....++.++.++|++- .+.||-.+.+ +.+.+.|+.|. .||.|
T Consensus 151 ~t~e~~~~~ak~l~~-~Gad~I~I-kDtaG~l~P~~v~~lv~alk~~--~~ipi~~H~Hnt~Gla~an~laAieaGad~i 226 (596)
T PRK14042 151 HTLDNFLELGKKLAE-MGCDSIAI-KDMAGLLTPTVTVELYAGLKQA--TGLPVHLHSHSTSGLASICHYEAVLAGCNHI 226 (596)
T ss_pred CCHHHHHHHHHHHHH-cCCCEEEe-CCcccCCCHHHHHHHHHHHHhh--cCCEEEEEeCCCCCcHHHHHHHHHHhCCCEE
Confidence 667777777777653 34554444 46666 4567777777777642 4689888876 33445555554 46766
Q ss_pred EecCCCeEEEeccceeccchh---hhhhhcCceeEEEeeccccccCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005581 236 YAPPSAYFSLYGLTVQASFLG---GVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSST 312 (690)
Q Consensus 236 ~a~p~~~vg~~Gv~~~~~~~k---~lLeKlGI~~~~~~~G~yKsa~ep~~~~~~S~e~re~~~~~ld~~~~~f~~~Va~~ 312 (690)
=..=++.=|..| ..-.. -+|+..|++. +..-+.-..+.+++..+...+...-...
T Consensus 227 D~ai~glGg~tG----n~~tE~lv~~L~~~g~~t------------------gidl~~l~~~~~~~~~vr~~y~~~~~~~ 284 (596)
T PRK14042 227 DTAISSFSGGAS----HPPTEALVAALTDTPYDT------------------ELDLNILLEIDDYFKAVRKKYSQFESEA 284 (596)
T ss_pred EeccccccCCCC----cHhHHHHHHHHHhcCCCC------------------CCCHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 554433333222 22222 2344444322 3444444555555555544443333344
Q ss_pred cCCCHHHHHHHHhcCcccH--HHHHhcCCeeEecchhHHHH---HHHHHhC
Q 005581 313 KGKRKEDIERFINDGVYKV--ERLKEEGFITNVLYDDEVIS---MLKERLG 358 (690)
Q Consensus 313 Rg~~~~~v~~~~~~~v~~a--~eAl~~GLID~i~~~de~~~---~l~~~~g 358 (690)
++.+.+-...-+-|+.++. +|+.+.|+-|++ +|+++ .+.+.+|
T Consensus 285 ~~~~~~v~~hq~PGG~~snl~~Ql~~~g~~d~~---~ev~~e~~~v~~~lG 332 (596)
T PRK14042 285 QNIDPRVQLYQVPGGMISNLYNQLKEQNALDKM---DAVHKEIPRVRKDLG 332 (596)
T ss_pred ccCCcceeecCCCcchhhHHHHHHHHCCcHhHH---HHHHHHHHHHHHHcC
Confidence 5555544433344666643 799999999985 35544 3445555
No 381
>PRK14556 pyrH uridylate kinase; Provisional
Probab=28.54 E-value=1.1e+02 Score=32.34 Aligned_cols=99 Identities=11% Similarity=0.012 Sum_probs=65.7
Q ss_pred ceEEEEEcCCC--------CCCHHHHHHHHHHHHHHhhcCCeEEEEecC--cchhhhHHh--hccCeeEecCCCeEEEec
Q 005581 180 IVGIYLHIEPL--------SCGWGKVEEIRRHVVDFKKSGKFIIGYVPV--CGEKEYYLA--CACEELYAPPSAYFSLYG 247 (690)
Q Consensus 180 IkgVvL~i~s~--------Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~--aas~gY~LA--saaD~I~a~p~~~vg~~G 247 (690)
.+-|+|.+.+- |-+.....++.+.|+++.+.|..|...+.+ .+-+ -... ...|+..+.. +|..+
T Consensus 15 ~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg-~~~~~~~~~~r~~~D~---~Gmla 90 (249)
T PRK14556 15 LKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRG-GRANFGNKIRRATADS---MGMIA 90 (249)
T ss_pred hCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhC-chhhccCCCchhhhhH---HHHHH
Confidence 56789987651 234566899999999998888877666542 2222 1111 1244444443 44444
Q ss_pred cceeccchhhhhhhcCceeEEEeeccccccCCccc
Q 005581 248 LTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLT 282 (690)
Q Consensus 248 v~~~~~~~k~lLeKlGI~~~~~~~G~yKsa~ep~~ 282 (690)
...+.+.+...|++.|++..++..=+.....+||.
T Consensus 91 T~iNal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~ 125 (249)
T PRK14556 91 TMINALALRDMLISEGVDAEVFSAKGVDGLLKVAS 125 (249)
T ss_pred HHHHHHHHHHHHHHcCCCeEEeeccccCcCCCCCC
Confidence 55666778999999999999998777777777774
No 382
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=27.15 E-value=2.6e+02 Score=32.85 Aligned_cols=67 Identities=10% Similarity=0.207 Sum_probs=47.1
Q ss_pred eEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhc--------CCCceEEEEEcCC-CCCCHHHHHHHHHHHHHHhhc
Q 005581 140 SVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAY--------DPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDFKKS 210 (690)
Q Consensus 140 ~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~--------D~~IkgVvL~i~s-~Gg~~~~~~eI~~aI~~~r~s 210 (690)
.+.+++++|++.- .+.+.+.+.+++..+ ++.++.|+++++. ..-+.+.++.+.+..+++++.
T Consensus 455 ~i~I~r~~g~L~F---------~na~~~~~~l~~~~~~~~~~~~~~~~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~ 525 (563)
T TIGR00815 455 GILVYRVDGPLYF---------ANAEDLKDRLLKRIEDETRRELERPPLQVVILDMSAVPHLDTSGIHALEELRKELKAR 525 (563)
T ss_pred CEEEEEcCCceEe---------CcHHHHHHHHHHHHhhhccccccCCCceEEEEECCCCCcchHHHHHHHHHHHHHHHHc
Confidence 4677777777654 234566666655433 2357999999975 456788888899999999887
Q ss_pred CCeEE
Q 005581 211 GKFII 215 (690)
Q Consensus 211 gKpVv 215 (690)
|+.++
T Consensus 526 g~~l~ 530 (563)
T TIGR00815 526 GIQLL 530 (563)
T ss_pred CCEEE
Confidence 77665
No 383
>PRK00766 hypothetical protein; Provisional
Probab=26.21 E-value=1.8e+02 Score=29.55 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCCCceEEEEEccCCCcchhh-hhHHHHHHHHhcCCCCEEEEECccccHHHHHHHH
Q 005581 415 GEQLIEKIRKVRESKRYKAAIIRIDSPGGDALA-SDLMWREIRLLSESKPVIASMSDVAASGGYYMAM 481 (690)
Q Consensus 415 ~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~a-s~~i~~~I~~l~~~KPVVa~v~g~AaSGGy~iA~ 481 (690)
.+.+++.+.....-+++++|+|.+-+.||.-.. -+.++++. +.|||+.|.-+--+-|..-|+
T Consensus 56 T~~i~~mv~~~~~r~~i~~V~L~Git~agFNvvD~~~l~~~t-----g~PVI~V~r~~p~~~~ie~AL 118 (194)
T PRK00766 56 TEAIIEMVNSSRHKGQLRVIMLDGITYGGFNVVDIEELYRET-----GLPVIVVMRKKPDFEAIESAL 118 (194)
T ss_pred HHHHHHHHHhcccccceEEEEECCEeeeeeEEecHHHHHHHH-----CCCEEEEEecCCCHHHHHHHH
Confidence 455666555544447899999998888885332 33444333 899999876555455544443
No 384
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=26.12 E-value=1.6e+02 Score=33.64 Aligned_cols=151 Identities=15% Similarity=0.058 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhCC-CceEEEEEccCCCcchhhhhHHHHHHHHhc--CC-CCEEEE----ECccccHHHHHHHHhc--C
Q 005581 415 GEQLIEKIRKVRESK-RYKAAIIRIDSPGGDALASDLMWREIRLLS--ES-KPVIAS----MSDVAASGGYYMAMAA--G 484 (690)
Q Consensus 415 ~~~l~~~l~~a~~D~-~VkaVVLrinSpGG~~~as~~i~~~I~~l~--~~-KPVVa~----v~g~AaSGGy~iA~aa--D 484 (690)
.+.|.++|+++.+.- +.++|.+-..++-+- -.+.|-..+++++ -+ +|||.. ..|..-+.||.+|.-+ +
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~~~l--IGDDi~~v~~e~~~~~~~~pvv~v~t~gf~g~s~~~G~~~a~~al~~ 186 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCTTAL--IGDDIDAIAREVMEEIPDVDVFAINAPGFAGPSQSKGHHVANITWIN 186 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCChHHh--hccCHHHHHHHHHHhcCCCeEEEeeCCCcCCcccchHHHHHHHHHHH
Confidence 578888888887654 678888876554322 1333333344432 23 888885 2344456789887653 3
Q ss_pred eEEE--ecC-ceecccccccc---c---cchHHHHHHcCCceeeeccc--chhhhhhccCCCC----ChhHHHHHHHHHH
Q 005581 485 TILA--ENL-TLTGSIGVVTG---K---FNLGKLYEKIGFNKEIISRG--KYAEVLAAEQRPF----RPDEAELFAKSAQ 549 (690)
Q Consensus 485 ~I~A--~p~-t~~GSIGv~~~---~---~~~~~l~~klGi~~~~i~~g--~~~~~~~~~~~~~----s~~~~~~~~~~i~ 549 (690)
.++- .|. ..-+++-+++. . ..+..+++++|+++...-.| .+.++...+.-.+ .+.....+.+.++
T Consensus 187 ~l~~~~~~~~~~~~~VNiiG~~~~~gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~~~~A~lniv~~~~~~~~~A~~Le 266 (457)
T TIGR01284 187 DKVGTAEPEITTEYDVNLIGEYNIQGDLWVLKKYFERMGIQVLSTFTGNGCYDELRWMHRAKLNVVRCARSANYIANELE 266 (457)
T ss_pred HHhCccCcccCCCCeEEEEccCCchhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHhccccCEEEEEChHHHHHHHHHHH
Confidence 3331 121 11123333221 1 23668899999998644332 2344331121111 2333333344443
Q ss_pred HH---------------HHHHHHHHHhhcCCCH
Q 005581 550 NA---------------YKLFRDKAAFSRSMTV 567 (690)
Q Consensus 550 ~~---------------y~~F~~~Va~~R~~~~ 567 (690)
+- -+.|++.+++--|++.
T Consensus 267 ~~~GiP~~~~~~~G~~~T~~~l~~ia~~~g~~~ 299 (457)
T TIGR01284 267 ERYGIPRLDIDFFGFEYCAKNLRKIGEFFGIEE 299 (457)
T ss_pred HHhCCCeEecccCCHHHHHHHHHHHHHHhCCch
Confidence 22 3467777777766653
No 385
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=26.09 E-value=1.1e+02 Score=25.81 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=21.4
Q ss_pred CCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581 177 DPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 177 D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
++++..++|+.... -.+.|..+++.|+.||||++
T Consensus 24 ~~~~~v~~iD~~~~---------~~~~I~~L~~~G~~vicY~s 57 (74)
T PF03537_consen 24 DPDVDVVVIDLFDF---------SKEEIARLKAQGKKVICYFS 57 (74)
T ss_dssp TSS-SEEEE-SBS-----------HHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCEEEECCccC---------CHHHHHHHHHCCCEEEEEEe
Confidence 36777888876541 13345667788999999998
No 386
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=25.98 E-value=5.6e+02 Score=24.14 Aligned_cols=107 Identities=14% Similarity=0.151 Sum_probs=59.5
Q ss_pred CCCCCcccccchhhHHHHHHHHHHHHc----------Cccccc----c--CCeEEEEEEceeeccccccccCCCCCHHHH
Q 005581 104 EYPSGEFEYEKFSAWKIFTVKLRMLVA----------FPWERV----R--KGSVLTMKLRGQIADQLKSRFSSGLSLPQI 167 (690)
Q Consensus 104 ~~p~g~~~~~~~~~~~~~~~~~~~~~~----------~p~~~~----~--~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i 167 (690)
..+..+++.+|..+-.++++.++++.. +|.... . +.-++.|+-+|.+.=. ...++.+++
T Consensus 12 ~~~~~~initPlIDVvf~LLiFFmvts~~~~~~i~v~LP~a~~~~~~~~~~~~~i~I~~~g~i~~~-----~~~v~~~~L 86 (141)
T PRK11267 12 NGEMHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVNLPASTSTPQPRPEKPVYLSVKADNSMFIG-----NDPVTDETM 86 (141)
T ss_pred cCCcCcccCCCHHHHHHHHHHHHHhhhhccccCeeecCCCCCCCCCCCCCCCEEEEEeCCCCEEEC-----CccccHHHH
Confidence 344567888888777655554444322 132211 1 1112333333443311 124678888
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec
Q 005581 168 CENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 168 ~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
...|+++.....-..|+|+.|.- ...+.+.+.+..+++.|..-++++.
T Consensus 87 ~~~L~~~~~~~~~~~V~I~aD~~----~~~~~vv~vmd~l~~aG~~~v~l~t 134 (141)
T PRK11267 87 ITALDALTEGKKDTTIFFRADKT----VDYETLMKVMDTLHQAGYLKIGLVG 134 (141)
T ss_pred HHHHHHHHhcCCCceEEEEcCCC----CCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 88888876533334577777653 2345666667777788877676665
No 387
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=25.83 E-value=2.7e+02 Score=31.21 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=47.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHhhcC--CeEEEEec---Ccc--hhhhHHhhccCeeEecCCCeEEEeccceeccch
Q 005581 183 IYLHIEPLSCGWGKVEEIRRHVVDFKKSG--KFIIGYVP---VCG--EKEYYLACACEELYAPPSAYFSLYGLTVQASFL 255 (690)
Q Consensus 183 VvL~i~s~Gg~~~~~~eI~~aI~~~r~sg--KpVvAy~~---~aa--s~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~ 255 (690)
++|-||+|+-.+.-+ +.+|+.+ +|+|=|+. .++ .-.--|+.+||.+.+ -.+|-
T Consensus 88 ~~i~IDsPdFnl~va-------k~lrk~~p~i~iihYV~PsVWAWr~~Ra~~i~~~~D~lLa-------------ilPFE 147 (381)
T COG0763 88 VLILIDSPDFNLRVA-------KKLRKAGPKIKIIHYVSPSVWAWRPKRAVKIAKYVDHLLA-------------ILPFE 147 (381)
T ss_pred EEEEeCCCCCchHHH-------HHHHHhCCCCCeEEEECcceeeechhhHHHHHHHhhHeee-------------ecCCC
Confidence 467799999877644 3445556 89999996 344 347889999999875 24677
Q ss_pred hhhhhhcCcee
Q 005581 256 GGVLEKVGIEP 266 (690)
Q Consensus 256 k~lLeKlGI~~ 266 (690)
+++++|.|+..
T Consensus 148 ~~~y~k~g~~~ 158 (381)
T COG0763 148 PAFYDKFGLPC 158 (381)
T ss_pred HHHHHhcCCCe
Confidence 88999999984
No 388
>PLN02727 NAD kinase
Probab=25.48 E-value=2.4e+02 Score=35.24 Aligned_cols=62 Identities=16% Similarity=-0.031 Sum_probs=43.7
Q ss_pred HHHHHHhhcCCCceEEEEEcCCCC-CCHHHHHHHHHHHHHHhhcCCeEEEEec-CcchhhhHHhhc
Q 005581 168 CENFVKAAYDPRIVGIYLHIEPLS-CGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCGEKEYYLACA 231 (690)
Q Consensus 168 ~~~L~~Aa~D~~IkgVvL~i~s~G-g~~~~~~eI~~aI~~~r~sgKpVvAy~~-~aas~gY~LAsa 231 (690)
...+++|++...++-|-+-+...+ -...+++++++.+++ ...|||++|+. ++..+|.++||.
T Consensus 299 ~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~--slpkPVLvHCKSGarRAGamvA~y 362 (986)
T PLN02727 299 QAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSD--SSKKPIYLHSKEGVWRTSAMVSRW 362 (986)
T ss_pred hHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHh--hcCCCEEEECCCCCchHHHHHHHH
Confidence 455666776678888888886544 467777888777743 45899999998 554666665553
No 389
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=25.36 E-value=1.7e+02 Score=25.65 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHh--cCCCCEEEEECcccc
Q 005581 414 IGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLL--SESKPVIASMSDVAA 473 (690)
Q Consensus 414 ~~~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l--~~~KPVVa~v~g~Aa 473 (690)
..+++.+.++++.+++++..|++.= ...+.+-+.++++ ++..|+|+.+-+.-.
T Consensus 26 ~~ee~~~~l~~l~~~~~~gIIii~e-------~~~~~~~~~l~~~~~~~~~P~iv~IP~~~~ 80 (95)
T PF01990_consen 26 DPEEAEEALKELLKDEDVGIIIITE-------DLAEKIRDELDEYREESSLPLIVEIPSKEG 80 (95)
T ss_dssp SHHHHHHHHHHHHHHTTEEEEEEEH-------HHHTTHHHHHHHHHHTSSSSEEEEESTTCC
T ss_pred CHHHHHHHHHHHhcCCCccEEEeeH-------HHHHHHHHHHHHHHhccCCceEEEcCCCCC
Confidence 4689999999999999998888862 2344456666666 458999999876543
No 390
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=25.34 E-value=2.2e+02 Score=31.71 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=50.4
Q ss_pred ccCCCCCHHHHHHHHHHhhcCCCceEEEEEc--CCCCCCHHHHHHHHHHHHHHhhcCCeEEEEecCcchhhhHH
Q 005581 157 RFSSGLSLPQICENFVKAAYDPRIVGIYLHI--EPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYL 228 (690)
Q Consensus 157 ~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i--~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~aas~gY~L 228 (690)
+|-+...+..+.+.|++...| +|--|++.| |+.||-......++..-+--++-+.||+-=+.-++.-+|+|
T Consensus 164 pFKGd~D~~kLe~lidevG~~-nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFI 236 (471)
T COG3033 164 PFKGNFDLEKLERLIDEVGAD-NVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFI 236 (471)
T ss_pred CCCCccCHHHHHHHHHHhCcc-cCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhh
Confidence 566778899999999998765 677777755 78888887777776544444567889875444556656654
No 391
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=24.83 E-value=2.8e+02 Score=30.97 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=48.5
Q ss_pred CCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCe--EEEEec---Ccc--hhhhHHhhccCeeEecCCCeEEEeccc
Q 005581 177 DPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKF--IIGYVP---VCG--EKEYYLACACEELYAPPSAYFSLYGLT 249 (690)
Q Consensus 177 D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKp--VvAy~~---~aa--s~gY~LAsaaD~I~a~p~~~vg~~Gv~ 249 (690)
..+..+| +-||.||-.+--+. .+|+.|.| |+=|+. .++ +-..-|+-.+|++++
T Consensus 80 ~~~pd~v-IlID~pgFNlrlak-------~lk~~~~~~~viyYI~PqvWAWr~~R~~~i~~~~D~ll~------------ 139 (373)
T PF02684_consen 80 EEKPDVV-ILIDYPGFNLRLAK-------KLKKRGIPIKVIYYISPQVWAWRPGRAKKIKKYVDHLLV------------ 139 (373)
T ss_pred HcCCCEE-EEeCCCCccHHHHH-------HHHHhCCCceEEEEECCceeeeCccHHHHHHHHHhheeE------------
Confidence 4445554 45999997775443 33344554 888886 233 348899999999865
Q ss_pred eeccchhhhhhhcCceeEEE
Q 005581 250 VQASFLGGVLEKVGIEPQVQ 269 (690)
Q Consensus 250 ~~~~~~k~lLeKlGI~~~~~ 269 (690)
-.+|-.+++++.|++.+.+
T Consensus 140 -ifPFE~~~y~~~g~~~~~V 158 (373)
T PF02684_consen 140 -IFPFEPEFYKKHGVPVTYV 158 (373)
T ss_pred -CCcccHHHHhccCCCeEEE
Confidence 2457788899999876433
No 392
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=24.19 E-value=3.1e+02 Score=29.30 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHH---HHHHHHHHHHhhcCCeEEEEec
Q 005581 159 SSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKV---EEIRRHVVDFKKSGKFIIGYVP 219 (690)
Q Consensus 159 ~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~---~eI~~aI~~~r~sgKpVvAy~~ 219 (690)
+++..-+++..+++-...||+|++|++.+ +||=+..+ -.|..+.+++ +...|.+.-.+
T Consensus 316 GGgV~EdqV~~Af~ilTaDPkVk~iLvNi--FGGIVNCAtIANGiv~A~~kl-~LnVPlVVRLE 376 (412)
T KOG1447|consen 316 GGGVKEDQVYQAFKILTADPKVKAILVNI--FGGIVNCATIANGIVKACRKL-ELNVPLVVRLE 376 (412)
T ss_pred cCcccHHHHHHHhhhhccCCceeEEEEeh--hcceehhHhHhhHHHHHHHhh-cCCCcEEEEEc
Confidence 35677889999999999999999999865 44333222 2344444444 24566666655
No 393
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=24.09 E-value=1.9e+02 Score=32.67 Aligned_cols=104 Identities=11% Similarity=0.045 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEec-Ccc---hhhhHHhhc--cCeeEe
Q 005581 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVP-VCG---EKEYYLACA--CEELYA 237 (690)
Q Consensus 164 ~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~-~aa---s~gY~LAsa--aD~I~a 237 (690)
.+.+.++|+++.+.-+.+.|++--..... .-.+.+...++++++.++||+.+-. .+. ..||..+.. .+...-
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~~~--~IGdDi~~v~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~~~~~ 148 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCIAE--IIGDDVGAVVSEFQEGGAPIVYLETGGFKGNNYAGHEIVLKAIIDQYVG 148 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCcHH--HhhcCHHHHHHHhhhcCCCEEEEECCCcCcccccHHHHHHHHHHHHhcc
Confidence 46788888887664445556654333211 1113344445555556889987653 322 247755532 121111
Q ss_pred ----cCCCeEEEeccce--------eccchhhhhhhcCceeEEE
Q 005581 238 ----PPSAYFSLYGLTV--------QASFLGGVLEKVGIEPQVQ 269 (690)
Q Consensus 238 ----~p~~~vg~~Gv~~--------~~~~~k~lLeKlGI~~~~~ 269 (690)
.+...+.++|... ...-++.+|+++|+++..+
T Consensus 149 ~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 149 QSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred CCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 1234577777532 2344899999999999665
No 394
>smart00245 TSPc tail specific protease. tail specific protease
Probab=23.89 E-value=2.7e+02 Score=27.58 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEcCC-CCCCHHHHHHHHHHHH
Q 005581 163 SLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVV 205 (690)
Q Consensus 163 s~~~i~~~L~~Aa~D~~IkgVvL~i~s-~Gg~~~~~~eI~~aI~ 205 (690)
+.+++.++++++++ .+++++||++-. +||....+..+.+.+.
T Consensus 42 ~~~~~~~~~~~l~~-~~~~~lIiDLR~N~GG~~~~~~~~~~~f~ 84 (192)
T smart00245 42 TSNLVEKAWKKLEK-TNVEGLILDLRNNPGGLLSAAIDVSSLFL 84 (192)
T ss_pred hHHHHHHHHHHHHh-CCCcEEEEEecCCCCCCHHHHHHHHHHhc
Confidence 34677778888864 479999999965 6666777777766554
No 395
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=23.80 E-value=5.7e+02 Score=28.05 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhc-CCeEEEEecCcchhhh-HHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCceeEEEeeccc
Q 005581 197 VEEIRRHVVDFKKS-GKFIIGYVPVCGEKEY-YLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKY 274 (690)
Q Consensus 197 ~~eI~~aI~~~r~s-gKpVvAy~~~aas~gY-~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~~~~~~~G~y 274 (690)
.++|.++|...+++ +||++-.+..--..|. .+.- .-..+|.....--++.+.+++|+..
T Consensus 218 ~~~i~~A~~~a~~~~~kP~~Ii~~TvkG~G~~~~e~-----------~~~~Hg~~l~~ee~~~~k~~lg~~~-------- 278 (332)
T PF00456_consen 218 VEAIYAAIEEAKASKGKPTVIIARTVKGKGVPFMEG-----------TAKWHGSPLTEEEVEQAKKELGWDQ-------- 278 (332)
T ss_dssp HHHHHHHHHHHHHSTSS-EEEEEEE-TTTTSTTTTT-----------SGGGTSS--HHHHHHHHHHHTTSST--------
T ss_pred HHHHHHHHHHHHhcCCCCceeecceEEecCchhhcc-----------cchhhccCCcHHHHHHHHHHcCCCC--------
Confidence 57899999998876 8999888763332222 1111 1234554444455788888998864
Q ss_pred cccCCcccCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCHH
Q 005581 275 KSAGDQLTRKTMSEENCEMLTAL---LDNIYGNWLDKVSSTKGKRKE 318 (690)
Q Consensus 275 Ksa~ep~~~~~~S~e~re~~~~~---ld~~~~~f~~~Va~~Rg~~~~ 318 (690)
++|. .+++.++..+.. -...++.|.+.+++-....++
T Consensus 279 ----~~F~---V~~eV~~~f~~~~~~g~~~~~~W~~~~~~y~~~~P~ 318 (332)
T PF00456_consen 279 ----EPFE---VPEEVYDHFRERIAEGAKAEAEWKELFAAYKKKYPE 318 (332)
T ss_dssp ----STTC---GCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred ----CCcc---cCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHCHH
Confidence 5553 455555444433 334555555555555444443
No 396
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=23.49 E-value=1.3e+02 Score=28.91 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEE
Q 005581 166 QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFII 215 (690)
Q Consensus 166 ~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVv 215 (690)
++++.|.+|..+ +.||++ .||+---.+-.|+++|. ..++|+|
T Consensus 54 elId~i~~a~~~--~dgiII---Npga~THtSiAl~DAl~---~~~~P~v 95 (141)
T TIGR01088 54 QLIDKIHEAEGQ--YDGIII---NPGALTHTSVALRDALA---AVSLPVV 95 (141)
T ss_pred HHHHHHHhcccc--CCEEEE---cChHHhhhHHHHHHHHH---cCCCCEE
No 397
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=23.04 E-value=3.1e+02 Score=31.35 Aligned_cols=90 Identities=24% Similarity=0.369 Sum_probs=57.2
Q ss_pred HHHHHHHHHHh---------hcC---C-CceEEEEEcCCCCCCH--------HHHHHHHHHHHHHhhcCCeEEEEecCcc
Q 005581 164 LPQICENFVKA---------AYD---P-RIVGIYLHIEPLSCGW--------GKVEEIRRHVVDFKKSGKFIIGYVPVCG 222 (690)
Q Consensus 164 ~~~i~~~L~~A---------a~D---~-~IkgVvL~i~s~Gg~~--------~~~~eI~~aI~~~r~sgKpVvAy~~~aa 222 (690)
+.+-++.|+++ .+| | ++.+|+| |||+ +..+.+++.|+++-+.|+||+|=+.+.
T Consensus 260 Y~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~vYl-----gGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGl- 333 (451)
T COG1797 260 YPENLELLREAGAELVFFSPLADEELPPDVDAVYL-----GGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGL- 333 (451)
T ss_pred cHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCEEEe-----CCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccc-
Confidence 55677777777 122 3 6888888 4443 334669999999999999999865421
Q ss_pred hhhhHHhhccCeeEecCCCeEEEeccceeccchhhhhhhcCce
Q 005581 223 EKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIE 265 (690)
Q Consensus 223 s~gY~LAsaaD~I~a~p~~~vg~~Gv~~~~~~~k~lLeKlGI~ 265 (690)
.|| |+.+....+......|+.--...+.+=|..+|-.
T Consensus 334 ---MYL---~~~le~~~G~~~~M~Gvlp~~~~m~~Rl~~lGY~ 370 (451)
T COG1797 334 ---MYL---GESLEDADGDTYEMVGVLPGSTRMTKRLQALGYR 370 (451)
T ss_pred ---eee---hhheeccCCceeeeeeeeccchhhhhhhhcccee
Confidence 111 4455555555666666666666666655556553
No 398
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=22.96 E-value=2.3e+02 Score=32.49 Aligned_cols=104 Identities=14% Similarity=0.012 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHhhcCCCceEEEEEcCCCCCCH-HHHHHHHHHHHHHhhcCCeEEEEec-Ccc-----hhhhHHhhccCee
Q 005581 163 SLPQICENFVKAAYDPRIVGIYLHIEPLSCGW-GKVEEIRRHVVDFKKSGKFIIGYVP-VCG-----EKEYYLACACEEL 235 (690)
Q Consensus 163 s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~-~~~~eI~~aI~~~r~sgKpVvAy~~-~aa-----s~gY~LAsaaD~I 235 (690)
+..++-+.+.++.++-+.++|++.-..+.+=. ...+.+.+.+++ +-|+|||.+-. +.. +-++.|++.+++-
T Consensus 81 ~~~~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~--~~gipVV~v~~~Gf~~~~tqg~d~~Laa~~~~~ 158 (457)
T CHL00073 81 DYEELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEA--EIGIPIVVARANGLDYAFTQGEDTVLAAMAHRC 158 (457)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHH--hhCCCEEEEeCCCccCcCCcchhHHHHHhHHhh
Confidence 35678888888888888899998766553211 112233333331 34899998865 322 2377777776522
Q ss_pred Ee------c------------------------CCCeEEEecc--ceeccchhhhhhhcCceeEE
Q 005581 236 YA------P------------------------PSAYFSLYGL--TVQASFLGGVLEKVGIEPQV 268 (690)
Q Consensus 236 ~a------~------------------------p~~~vg~~Gv--~~~~~~~k~lLeKlGI~~~~ 268 (690)
.- + ....+-++|- .....-++.+|+++||++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~G~~~~~~~~~i~~lL~~lGI~v~~ 223 (457)
T CHL00073 159 PEQEVSTSESKETKQKTQSSLFSNKEKSLVKYKTHPPLVLFGSLPSTVASQLTLELKRQGIKVSG 223 (457)
T ss_pred hhhhcCccccccccccccccccccccccccccCCCCcEEEEEecCcccHHHHHHHHHHcCCeEeE
Confidence 11 1 0112333333 33345589999999999953
No 399
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=22.80 E-value=2.8e+02 Score=31.70 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhh-----cCCeEEEEec-Ccc---hhhhHHhhcc--
Q 005581 164 LPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKK-----SGKFIIGYVP-VCG---EKEYYLACAC-- 232 (690)
Q Consensus 164 ~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~-----sgKpVvAy~~-~aa---s~gY~LAsaa-- 232 (690)
.+.+.++|+++.+.-+.+.|.+--.... -.-.+.+...++++++ .++||+.+-. .+. ..||..|..+
T Consensus 77 ~~~L~~aI~~~~~~~~P~~I~V~ttC~~--eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~~~a~~al~ 154 (455)
T PRK14476 77 DENVEEAILNICKKAKPKIIGLCTTGLT--ETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALEDGWAAAVEAIV 154 (455)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCcchH--hhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 4678888888865333455555422211 0111233333444433 2789988654 332 4577776532
Q ss_pred CeeEec------CCCeEEEecc----ceeccchhhhhhhcCceeEEE
Q 005581 233 EELYAP------PSAYFSLYGL----TVQASFLGGVLEKVGIEPQVQ 269 (690)
Q Consensus 233 D~I~a~------p~~~vg~~Gv----~~~~~~~k~lLeKlGI~~~~~ 269 (690)
+.+.-. ....+.++|- .....-++.+|+.+|+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~~l 201 (455)
T PRK14476 155 EALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPIIL 201 (455)
T ss_pred HHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceEEe
Confidence 433321 2235777752 233445789999999998543
No 400
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=22.69 E-value=1.4e+02 Score=28.79 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEE
Q 005581 166 QICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFII 215 (690)
Q Consensus 166 ~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVv 215 (690)
++++.|.+|.. ++.|||| .||+---.+-.|+++|+ ..++|+|
T Consensus 56 elId~I~~a~~--~~dgiiI---Npga~THtSiAl~DAl~---~~~~P~V 97 (146)
T PRK05395 56 ELIDRIHEARD--GADGIII---NPGAYTHTSVALRDALA---AVSIPVI 97 (146)
T ss_pred HHHHHHHhccc--CCcEEEE---CchHHHHHHHHHHHHHH---cCCCCEE
No 401
>PRK11660 putative transporter; Provisional
Probab=22.65 E-value=3.1e+02 Score=32.23 Aligned_cols=66 Identities=12% Similarity=0.171 Sum_probs=50.6
Q ss_pred CCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCCCceEEEEEcCC-CCCCHHHHHHHHHHHHHHhhcCCeEE
Q 005581 138 KGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEP-LSCGWGKVEEIRRHVVDFKKSGKFII 215 (690)
Q Consensus 138 ~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~~IkgVvL~i~s-~Gg~~~~~~eI~~aI~~~r~sgKpVv 215 (690)
.+.+.+++++|++.-. +.+.+.+.+++.. ++.+.|+|++.. ..-+.+..+.+.+..+++++ |..++
T Consensus 460 ~~~i~iv~~~g~L~F~---------n~~~l~~~l~~~~--~~~~~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~ 526 (568)
T PRK11660 460 PDDVLVLRINGPLFFA---------AAERLFTELESRT--EGKRIVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELR 526 (568)
T ss_pred CCcEEEEEeCCeeeee---------eHHHHHHHHHhhC--CCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEE
Confidence 3578999999998653 3567788877664 457889999965 45788889999999999987 76543
No 402
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=22.29 E-value=4.9e+02 Score=27.05 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhhcCCeEEEEecCcchhhhHHhhccCeeEecCCC
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSA 241 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~sgKpVvAy~~~aas~gY~LAsaaD~I~a~p~~ 241 (690)
.++.+=+..-+..-.||+| ++++=.+.|-++.....+++.|+.+|+.|+-|+-..+.. --+...||++++--.+
T Consensus 136 ~G~kqkV~iARAlvh~P~i--~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m----~EvealCDrvivlh~G 209 (245)
T COG4555 136 TGMKQKVAIARALVHDPSI--LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM----QEVEALCDRVIVLHKG 209 (245)
T ss_pred hhhHHHHHHHHHHhcCCCe--EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH----HHHHHhhheEEEEecC
Confidence 3466666666667788865 666666668889999999999999999888887433322 2355679999887666
Q ss_pred eEEE
Q 005581 242 YFSL 245 (690)
Q Consensus 242 ~vg~ 245 (690)
.+=.
T Consensus 210 evv~ 213 (245)
T COG4555 210 EVVL 213 (245)
T ss_pred cEEE
Confidence 5533
No 403
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=21.83 E-value=1.3e+02 Score=28.97 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCceEEEEEccCCCcchhhhhHHHHHHHHhcCCCCEEE
Q 005581 416 EQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIA 466 (690)
Q Consensus 416 ~~l~~~l~~a~~D~~VkaVVLrinSpGG~~~as~~i~~~I~~l~~~KPVVa 466 (690)
.+|++.|.++.++ +.+|||. |||....|-.|.+++..+ ++|+|=
T Consensus 54 Gelid~I~~a~~~--~dgiIIN---pga~thtS~Ai~DAl~~~--~~P~vE 97 (140)
T PF01220_consen 54 GELIDWIHEARDD--VDGIIIN---PGAYTHTSIAIRDALKAI--SIPVVE 97 (140)
T ss_dssp HHHHHHHHHHTCT--TSEEEEE----GGGGHT-HHHHHHHHCC--TS-EEE
T ss_pred HHHHHHHHHHHhh--CCEEEEc---cchhccccHHHHHHHHcC--CCCEEE
Confidence 4678888888755 7788885 788888888999999877 888875
No 404
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=21.59 E-value=2.9e+02 Score=27.43 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHhhcCCCceEEEEEcCCCCCCHHHHHHHHHHHHHHhh-cCCeEEEEecCcchhhhHHhhccCeeEecC
Q 005581 162 LSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKK-SGKFIIGYVPVCGEKEYYLACACEELYAPP 239 (690)
Q Consensus 162 ~s~~~i~~~L~~Aa~D~~IkgVvL~i~s~Gg~~~~~~eI~~aI~~~r~-sgKpVvAy~~~aas~gY~LAsaaD~I~a~p 239 (690)
.+-+++.++.+..+.=|++..+||-.+-.|| +|.++++.+|+ .|.||+..- ++.| +--.||.++-.|
T Consensus 124 VGEE~laEAVkAV~rLpRv~iLVLAGslMGG------kIteaVk~lr~~hgI~VISL~-M~GS----VpdVADlVvtDP 191 (218)
T COG1707 124 VGEEELAEAVKAVARLPRVGILVLAGSLMGG------KITEAVKELREEHGIPVISLN-MFGS----VPDVADLVVTDP 191 (218)
T ss_pred cChHHHHHHHHHHhccccceeEEEecccccc------hHHHHHHHHHHhcCCeEEEec-cCCC----CcchhheeecCc
Confidence 4557899999999999999888887666665 45566777776 489998643 3322 122456666655
No 405
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=21.59 E-value=8.4e+02 Score=25.85 Aligned_cols=94 Identities=12% Similarity=0.068 Sum_probs=69.0
Q ss_pred HHhhcCCCceEEEEEcCCC--CCCHHHHHHHHHHHHHHh-hcCCeEEEEecCcchhhhHHhhccCeeEecCCCeEEEecc
Q 005581 172 VKAAYDPRIVGIYLHIEPL--SCGWGKVEEIRRHVVDFK-KSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGL 248 (690)
Q Consensus 172 ~~Aa~D~~IkgVvL~i~s~--Gg~~~~~~eI~~aI~~~r-~sgKpVvAy~~~aas~gY~LAsaaD~I~a~p~~~vg~~Gv 248 (690)
+..+.++.| ++ +|.| .-++..-.++-+.++++. +.|+-||+..+.-. ..+..||++++=..+.+-..|-
T Consensus 151 rALaQ~~~i--LL--LDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN----~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 151 RALAQETPI--LL--LDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN----LAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHHhcCCCE--EE--eCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH----HHHHhCCEEEEEECCeEEeecC
Confidence 344556653 34 5555 577888899999999997 56888888887433 2245699999999999888888
Q ss_pred ceeccchhhhhhhcCceeEEEeecc
Q 005581 249 TVQASFLGGVLEKVGIEPQVQRIGK 273 (690)
Q Consensus 249 ~~~~~~~k~lLeKlGI~~~~~~~G~ 273 (690)
-.+.+.-..+-+-+||+..++....
T Consensus 223 p~evlT~e~l~~Vygv~~~~~~~~~ 247 (258)
T COG1120 223 PEEVLTEENLREVYGVDADVIEDPD 247 (258)
T ss_pred cchhcCHHHHHHHhCCceEEEEcCC
Confidence 7777777777778999987776443
No 406
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=21.57 E-value=4.3e+02 Score=27.51 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=47.0
Q ss_pred CeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcC-----------C-CceEEEEEc-----CCCCCC-HHHHHHH
Q 005581 139 GSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYD-----------P-RIVGIYLHI-----EPLSCG-WGKVEEI 200 (690)
Q Consensus 139 ~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D-----------~-~IkgVvL~i-----~s~Gg~-~~~~~eI 200 (690)
..|++|...|+ ..-.|...+++.+-.+ + +..+|++-. |-++++ .++...+
T Consensus 3 ~kvaVi~fpGt------------N~d~d~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v 70 (231)
T COG0047 3 PKVAVLRFPGT------------NCDYDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPV 70 (231)
T ss_pred ceEEEEEcCCc------------CchHHHHHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccCcchHHhhHHH
Confidence 46777877777 3345677777765333 2 456666622 223334 4555789
Q ss_pred HHHHHHHhhcCCeEEEEecCc
Q 005581 201 RRHVVDFKKSGKFIIGYVPVC 221 (690)
Q Consensus 201 ~~aI~~~r~sgKpVvAy~~~a 221 (690)
++.+++|-+.|+||+..++++
T Consensus 71 ~~~v~~~a~~g~~vLGICNGf 91 (231)
T COG0047 71 MDEVREFAEKGKPVLGICNGF 91 (231)
T ss_pred HHHHHHHHHCCCeEEEEcchh
Confidence 999999988999999998743
No 407
>smart00250 PLEC Plectin repeat.
Probab=21.41 E-value=70 Score=23.25 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=16.9
Q ss_pred cCCcccHHHHHHcCCcccc
Q 005581 575 QGRVWTGNDAASRGLVDAL 593 (690)
Q Consensus 575 ~Grv~tg~eA~e~GLVD~i 593 (690)
+|+.+|-.||++.||||.-
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 6888999999999999963
No 408
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=21.40 E-value=3e+02 Score=24.78 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=28.8
Q ss_pred cEEEEEeecccccCCCCCCCCCcchHHHHHHHHHHHHHhCCCceEEEEEc
Q 005581 389 QIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRI 438 (690)
Q Consensus 389 ~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~D~~VkaVVLri 438 (690)
.+.||++.|.|+. ..+..+.+.+.+.....+.+.|||..
T Consensus 13 ~~~vl~l~G~lD~-----------~~a~~~~e~~~~~~~~~~~~~ivIDl 51 (117)
T COG1366 13 GILVLPLIGELDA-----------ARAPALKETLLEVIAASGARGLVIDL 51 (117)
T ss_pred eEEEEEeeEEEch-----------HHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 4489999999984 34567888887666666677788865
No 409
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=21.21 E-value=3.9e+02 Score=31.92 Aligned_cols=87 Identities=14% Similarity=0.120 Sum_probs=56.9
Q ss_pred cCCeEEEEEEceeeccccccccCCCCCHHHHHHHHHHhhcCC-CceEEEEEcCCC-CCCHHHHHHHHHHHHHHhhcCCeE
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDP-RIVGIYLHIEPL-SCGWGKVEEIRRHVVDFKKSGKFI 214 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~s~~~i~~~L~~Aa~D~-~IkgVvL~i~s~-Gg~~~~~~eI~~aI~~~r~sgKpV 214 (690)
..+.|..|+++.. ..+..+.+.+.|++..++. .+-+||-.+.+. -|.+....+|.+.-+++++.|...
T Consensus 245 G~~~vv~VpvD~~----------~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~ 314 (608)
T TIGR03811 245 GLDQVIPVPVDSN----------YRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYF 314 (608)
T ss_pred CcccEEEeecCCC----------CcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCce
Confidence 3445667776432 1266788888888765443 345677777654 588888888887777776667655
Q ss_pred EEEecCcchhhhHHhhccCe
Q 005581 215 IGYVPVCGEKEYYLACACEE 234 (690)
Q Consensus 215 vAy~~~aas~gY~LAsaaD~ 234 (690)
+-+++ ++-|||..++.+|+
T Consensus 315 ~lHVD-AAyGG~~~~l~~~~ 333 (608)
T TIGR03811 315 YLHVD-AAYGGYGRAIFLDE 333 (608)
T ss_pred eEeee-ccccchhhhhhccc
Confidence 44444 56677776666654
No 410
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.19 E-value=8.6e+02 Score=27.37 Aligned_cols=172 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhhcCCCc-eEEEEEcCCCCCCHHHHHHHHHHHHHHh-hcCCeEEEEecCcchh-----hhHHhh--ccC
Q 005581 163 SLPQICENFVKAAYDPRI-VGIYLHIEPLSCGWGKVEEIRRHVVDFK-KSGKFIIGYVPVCGEK-----EYYLAC--ACE 233 (690)
Q Consensus 163 s~~~i~~~L~~Aa~D~~I-kgVvL~i~s~Gg~~~~~~eI~~aI~~~r-~sgKpVvAy~~~aas~-----gY~LAs--aaD 233 (690)
+.+.|.++|+++.+.-+. ++|.+--....+-.. +.|...+++++ +.++||+.+-...-.+ ||.+|. ..+
T Consensus 82 g~~kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIG--dDi~~v~~~~~~~~~~pvi~v~t~gf~g~s~~~G~~~a~~ai~~ 159 (421)
T cd01976 82 GDKKLAKAIDEAYELFPLNKGISVQSECPVGLIG--DDIEAVARKASKELGIPVVPVRCEGFRGVSQSLGHHIANDAIRD 159 (421)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEECCChHHHhc--cCHHHHHHHHHHhhCCCEEEEeCCCccCCcccHHHHHHHHHHHH
Q ss_pred eeEecC------CCeEEEeccce---eccchhhhhhhcCceeEEEeec-----cccccCCcccCCCCCHHHHHHHHHHHH
Q 005581 234 ELYAPP------SAYFSLYGLTV---QASFLGGVLEKVGIEPQVQRIG-----KYKSAGDQLTRKTMSEENCEMLTALLD 299 (690)
Q Consensus 234 ~I~a~p------~~~vg~~Gv~~---~~~~~k~lLeKlGI~~~~~~~G-----~yKsa~ep~~~~~~S~e~re~~~~~ld 299 (690)
.++-.. ...+.++|-.. ...-++.+|+++||++...-.| +.+.+++.-..=-+.+.....+.++|+
T Consensus 160 ~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~~~~~~~~~a~~Le 239 (421)
T cd01976 160 HILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCYRSMNYIARMME 239 (421)
T ss_pred HHhccCCccCCCCCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECcHHHHHHHHHHH
Q ss_pred HHH---------------HHHHHHHHHhcCCC-HHHHHHHHhcCcccHHHHHh
Q 005581 300 NIY---------------GNWLDKVSSTKGKR-KEDIERFINDGVYKVERLKE 336 (690)
Q Consensus 300 ~~~---------------~~f~~~Va~~Rg~~-~~~v~~~~~~~v~~a~eAl~ 336 (690)
+-| +.|++.+++.-|.+ ++++++++....=...++++
T Consensus 240 ~~fGiP~~~~~p~Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l~ 292 (421)
T cd01976 240 EKYGIPWMEYNFFGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIA 292 (421)
T ss_pred HHhCCcEEecccCCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH
No 411
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=20.17 E-value=2.7e+02 Score=32.90 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCceEEEEEccCC--Ccc--hhhhhHHHHHHHHhcCCCCEEEEE-----------CccccHHHHH
Q 005581 419 IEKIRKVRESKRYKAAIIRIDSP--GGD--ALASDLMWREIRLLSESKPVIASM-----------SDVAASGGYY 478 (690)
Q Consensus 419 ~~~l~~a~~D~~VkaVVLrinSp--GG~--~~as~~i~~~I~~l~~~KPVVa~v-----------~g~AaSGGy~ 478 (690)
.+.+++++..++=+-||+.+-+| =|. -.-..-+.+++-.+ +||.||.+ -|-||||||.
T Consensus 353 l~v~erl~hr~dg~yvvvsgitptp~gegkst~t~glvqal~~l--~k~~iacvrqpsqgptfgvkggaagggys 425 (935)
T KOG4230|consen 353 LAVLERLKHRKDGKYVVVSGITPTPLGEGKSTTTAGLVQALGAL--GKLAIACVRQPSQGPTFGVKGGAAGGGYS 425 (935)
T ss_pred HHHHHHHhccCCCcEEEEeccCCCCCCCCcchhHHHHHHHHHhh--CCcceeeecCCCcCCccccccccCCCccc
Confidence 45677777777778888876553 222 12222234445444 88888876 3779999994
Done!