Query 005581
Match_columns 690
No_of_seqs 401 out of 3267
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 18:38:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005581.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2088-2092//hhsearch_pdb/005581hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bf0_A Protease 4; bacterial, 1.0 1 1 698.6 39.2 487 135-635 27-540 (593)
2 3rst_A Signal peptide peptidas 1.0 1 1 333.4 22.8 232 387-622 2-237 (240)
3 3rst_A Signal peptide peptidas 1.0 1 1 318.2 23.8 229 137-370 1-235 (240)
4 3bf0_A Protease 4; bacterial, 1.0 1 1 287.8 18.4 219 137-360 299-518 (593)
5 2cby_A ATP-dependent CLP prote 1.0 1 1 199.8 14.6 169 391-603 28-200 (208)
6 1y7o_A ATP-dependent CLP prote 1.0 1 1 197.2 13.8 165 392-598 47-214 (218)
7 1yg6_A ATP-dependent CLP prote 1.0 1 1 194.5 15.0 161 392-596 28-191 (193)
8 1tg6_A Putative ATP-dependent 1.0 1 1 193.3 15.9 168 390-601 82-253 (277)
9 3viv_A 441AA long hypothetical 1.0 1 1 192.1 15.2 172 386-603 6-182 (230)
10 2f6i_A ATP-dependent CLP prote 1.0 1 1 185.5 14.8 163 390-597 39-204 (215)
No 1
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=1.00 E-value=1 Score=698.62 Aligned_cols=487 Identities=27% Similarity=0.437 Sum_probs=444.3
Q ss_pred CCCCCEEEEEEECEEECCCCC--CCC--------CC------CCCHHHHHHHHHHHHCCCCCEEEEEECCCCC-CCHHHH
Q ss_conf 236890999997103145543--345--------88------9999999999998453999219999909999-898899
Q 005581 135 RVRKGSVLTMKLRGQIADQLK--SRF--------SS------GLSLPQICENFVKAAYDPRIVGIYLHIEPLS-CGWGKV 197 (690)
Q Consensus 135 ~~~~~~VlvI~l~G~I~~~~~--~~~--------~~------~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~G-G~~~~~ 197 (690)
.+++++|++|+++|+|.++.. .+| ++ ..++.++++.|++|++|++|++|+|++|||| |+++++
T Consensus 27 ~~~~~~vl~l~l~G~I~e~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~~~ 106 (593)
T 3bf0_A 27 ETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSM 106 (593)
T ss_dssp ----CCEEEECCEEEEESCC--------------------CCEEEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHHH
T ss_pred CCCCCEEEEEECCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH
T ss_conf 77898699996873466778777858998765316776554445799999999999748996399998279887768999
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCC
Q ss_conf 99999999976359819999367522464785305906865887477702300100012265323940078961256655
Q 005581 198 EEIRRHVVDFKKSGKFIIGYVPVCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSA 277 (690)
Q Consensus 198 ~eI~~aI~~~r~sgKpVvAyv~~aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa 277 (690)
++|+++|++||++|||||||++.++|++||||++||+|||+|++.+|++|+.++.+||+++++|+||+++++++|+||++
T Consensus 107 ~~I~~~i~~~k~~gkpvva~~~~aas~~y~lAsaad~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a 186 (593)
T 3bf0_A 107 QYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSA 186 (593)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCEEHHHHHHHTTSSEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCEEEECCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEECCCCC
T ss_conf 99999999988349909999736414778999758989987995698855423465889999975980799984256677
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC--------CCCCHHHHHHCCCEEEECCHHHH
Q ss_conf 7764478999999999999999999999999997429999999998803--------76548878736881575251689
Q 005581 278 GDQLTRKTMSEENCEMLTALLDNIYGNWLDKVSSTKGKRKEDIERFIND--------GVYKVERLKEEGFITNVLYDDEV 349 (690)
Q Consensus 278 ~~p~~~~~~s~e~re~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~~~~~--------~~~~a~eAl~~GLID~i~~~de~ 349 (690)
++||+|++||+++|++++.+++++|++|++.|+++|+++.+++++++++ .+|++++|+++||||++++.+++
T Consensus 187 ~ep~~r~~ms~~~re~~~~~l~~~~~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~~e~ 266 (593)
T 3bf0_A 187 VEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEI 266 (593)
T ss_dssp GHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCHHHH
T ss_conf 78656788999999999999999999999999987699999999997420333431378449999977998877879999
Q ss_pred HHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99999981897799-98743333455531123466789985799995211036888787888301799999999998807
Q 005581 350 ISMLKERLGVQKDK-NLPMVDYRKYSGVRRWTLGLTGGGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRES 428 (690)
Q Consensus 350 ~~~l~~~~g~~~~~-~~~~v~~~~y~~~~~~~~~~~~~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d 428 (690)
++.+++..|.+.++ +++.+++.+| +.... ...+++|++|+++|+|.++... .+..+.+++.+.|+++.+|
T Consensus 267 ~~~l~~~~g~~~~~~~~~~v~~~~y-~~~~~----~~~~~~VavI~l~g~i~~n~~~----~~~~~~~~l~~~L~~a~~d 337 (593)
T 3bf0_A 267 EKALTKEFGWSKTDKNYRAISYYDY-ALKTP----ADTGDSIGVVFANGAIMDGEET----QGNVGGDTTAAQIRDARLD 337 (593)
T ss_dssp HHHHHHHHCEETTTTEESEEETTTS-CCCCC----CCCSCEEEEEEEEEEEESSSSC----TTSEEHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHH-CCCCC----CCCCCCEEEEEEEEEECCCCCC----CCHHHHHHHHHHHHHHHHC
T ss_conf 9999998499865565454668771-34577----7888978999984044478655----5606899999999998737
Q ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCEECCCCCCCCCCCHH
Q ss_conf 9956899981699951443168899999861-999799998860117999999763957870675000124424666547
Q 005581 429 KRYKAAIIRIDSPGGDALASDLMWREIRLLS-ESKPVIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLG 507 (690)
Q Consensus 429 ~~VkaVVLrinSpGG~~~as~~i~~~i~~~~-~~KPVIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GSIGV~~~~~~~~ 507 (690)
+++|+|||++|||||++.+++.|++++++++ .+|||||+|+|+|+|||||||++||+|+|+|+|++|++||++.+++++
T Consensus 338 ~~vkaVVL~i~spGG~~~~~~~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~ 417 (593)
T 3bf0_A 338 PKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVE 417 (593)
T ss_dssp TTEEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCEEEECCCCEEECCEEEEECCCHH
T ss_conf 99887999934998799999999999999983799889999987199999999958979988997761041577237567
Q ss_pred HHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHC
Q ss_conf 79987098321230430145532039999956999999999999999999998413999989999864986558879876
Q 005581 508 KLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASR 587 (690)
Q Consensus 508 ~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle~ 587 (690)
++++|+|+..+.+++|++|++ ++.+++++++++.+++.+++.|.+|++.|+++|+++.++++.+++|++|+|+||+++
T Consensus 418 ~~~~klGi~~~~~~~g~~k~~--~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~ 495 (593)
T 3bf0_A 418 NSLDSIGVHTDGVSTSPLADV--SITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKAN 495 (593)
T ss_dssp HHHHHTTCEEECCBSCGGGCC--CTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHH
T ss_pred HHHHHCCCEEEEEECCCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHC
T ss_conf 799866960224532554556--867799999999999999999999999999875999999999965997179999987
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHCCC
Q ss_conf 976421595899999999908999983489981499999888871226
Q 005581 588 GLVDALGGFSRAVAIAKQKANIPEDRQVTLVEMSKPSPTLPEILSSVG 635 (690)
Q Consensus 588 GLVD~ig~~~~ai~~a~~~a~l~~~~~v~~~~~~~~k~~~~~~l~~~~ 635 (690)
||||++++.+++++.+.++++++. +.++.|+.++.++..++....
T Consensus 496 GLVD~v~~~~~~~~~a~~~a~l~~---~~v~~~~~~~~~~~~l~~~~~ 540 (593)
T 3bf0_A 496 GLVDSLGDFDDAVAKAAELAKVKQ---WHLEYYVDEPTFFDKVMDNMS 540 (593)
T ss_dssp TSCSEECCHHHHHHHHHHHSCSCC---EEEEC----------------
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCC---CEEEEECCCCCHHHHHHHHHH
T ss_conf 997672689999999999759998---628993689999999999986
No 2
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=333.39 Aligned_cols=232 Identities=29% Similarity=0.531 Sum_probs=206.3
Q ss_pred CCCEEEEEEECCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCC
Q ss_conf 985799995211036888787-88830179999999999880799568999816999514431688999998619--997
Q 005581 387 GDQIAVIRASGSISRVRSPLS-LSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSE--SKP 463 (690)
Q Consensus 387 ~~~IAvI~i~G~I~~~~~~~~-~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i~~~~~--~KP 463 (690)
+++||+|+++|+|.++....+ +....++.+++.++|+++.+|++||+|||++|||||++.+++.+++.++.++. +||
T Consensus 2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~kP 81 (240)
T 3rst_A 2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKP 81 (240)
T ss_dssp CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCE
T ss_conf 98699999887886888767655667757999999999997299947999995189879999999999999999737991
Q ss_pred EEEEECCCCCHHHHHHHHHCCEEEEECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHH
Q ss_conf 99998860117999999763957870675000124424666547799870983212304301455320399999569999
Q 005581 464 VIASMSDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAEL 543 (690)
Q Consensus 464 VIA~i~g~AaSGGy~iA~aaD~IvA~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~ 543 (690)
|||+++|+|+|||||||++||+|||+|++.+|++||++..++++++++|+||+++.++.|.+|++. +|++++++++++.
T Consensus 82 Via~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~-~p~~~~s~~~~~~ 160 (240)
T 3rst_A 82 IYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIM-SPSREMTKEEKNI 160 (240)
T ss_dssp EEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTT-CTTSCCCHHHHHH
T ss_pred EEEEECCEEHHHHHHHHHHCCEEEECCCCEEECCCEEEEECCHHHHHHHCCCEEEEEECCCCCCCC-CCCCCCCHHHHHH
T ss_conf 999989950576799998499469778776861651167057999999759858898534655466-8889989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC-CCCCCCEEEEEECC
Q ss_conf 99999999999999998413999989999864986558879876976421595899999999908-99998348998149
Q 005581 544 FAKSAQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVWTGNDAASRGLVDALGGFSRAVAIAKQKAN-IPEDRQVTLVEMSK 622 (690)
Q Consensus 544 ~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~tg~eAle~GLVD~ig~~~~ai~~a~~~a~-l~~~~~v~~~~~~~ 622 (690)
+++.++.+|++|++.|+++|+++.++++.+++|++|+|++|+++||||++++.+++++.++++++ +++ +.+++|+.
T Consensus 161 ~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~~~~~~~~---~~v~~~~~ 237 (240)
T 3rst_A 161 MQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLKN---ASVISYEE 237 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHHHCGGGTT---CEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC---CEEEEECC
T ss_conf 999999999999999997679898997787637833599999869976268999999999998389888---65999479
No 3
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=318.17 Aligned_cols=229 Identities=20% Similarity=0.379 Sum_probs=212.9
Q ss_pred CCCEEEEEEECEEECCCCC--CCCC-CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCC
Q ss_conf 6890999997103145543--3458-89999999999998453999219999909999898899999999999763-598
Q 005581 137 RKGSVLTMKLRGQIADQLK--SRFS-SGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKK-SGK 212 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~--~~~~-~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~~eI~~aI~~~r~-sgK 212 (690)
++++|++|+++|+|.+... ..|+ ...++.++.++|+++..|++|++|+|+++++||++...++|+++++++++ ++|
T Consensus 1 p~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~k 80 (240)
T 3rst_A 1 PSSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKK 80 (240)
T ss_dssp CCCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 99869999988788688876765566775799999999999729994799999518987999999999999999973799
Q ss_pred EEEEEEC-CCCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHH
Q ss_conf 1999936-752246478530590686588747770230010001226532394007896125665577644789999999
Q 005581 213 FIIGYVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENC 291 (690)
Q Consensus 213 pVvAyv~-~aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~r 291 (690)
||||+++ .|+++||+||++||+|||+|++.+|++|+.++.++++++|+|+||+++++++|+||++++|| ++||++++
T Consensus 81 PVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~--~~~s~~~~ 158 (240)
T 3rst_A 81 PIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPS--REMTKEEK 158 (240)
T ss_dssp CEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTT--SCCCHHHH
T ss_pred EEEEEECCEEHHHHHHHHHHCCEEEECCCCEEECCCEEEEECCHHHHHHHCCCEEEEEECCCCCCCCCCC--CCCCHHHH
T ss_conf 1999989950576799998499469778776861651167057999999759858898534655466888--99899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHHC-CCCCCCCCCCCC
Q ss_conf 9999999999999999999742999999999880376548878736881575251689999999818-977999874333
Q 005581 292 EMLTALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLG-VQKDKNLPMVDY 370 (690)
Q Consensus 292 e~l~~~l~~~~~~f~~~Va~~Rg~~~~~v~~~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~~~g-~~~~~~~~~v~~ 370 (690)
++++.+++++|++|++.|+++|+++.+.++.++++++|++++|+++||||++++.+++++.+++++| ++ +++++.+
T Consensus 159 ~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~~~~~~~---~~~v~~~ 235 (240)
T 3rst_A 159 NIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVYDGRQAKKLNLVDELGFYDDTITAMKKDHKDLK---NASVISY 235 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHHHCGGGT---TCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC---CCEEEEE
T ss_conf 9999999999999999999767989899778763783359999986997626899999999999838988---8659994
No 4
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=1.00 E-value=1 Score=287.78 Aligned_cols=219 Identities=16% Similarity=0.240 Sum_probs=203.9
Q ss_pred CCCEEEEEEECEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 68909999971031455433458899999999999984539992199999099998988999999999997635981999
Q 005581 137 RKGSVLTMKLRGQIADQLKSRFSSGLSLPQICENFVKAAYDPRIVGIYLHIEPLSCGWGKVEEIRRHVVDFKKSGKFIIG 216 (690)
Q Consensus 137 ~~~~VlvI~l~G~I~~~~~~~~~~~~sl~~i~~~L~~Aa~D~~IkaIvL~ids~GG~~~~~~eI~~aI~~~r~sgKpVvA 216 (690)
.++.|++|+++|+|...... .+..+..++.++|++|..|+++++|+|++|+|||++...++|++.++++++++|||||
T Consensus 299 ~~~~VavI~l~g~i~~n~~~--~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~~~~~~i~~~i~~l~~~~kPVia 376 (593)
T 3bf0_A 299 TGDSIGVVFANGAIMDGEET--QGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVV 376 (593)
T ss_dssp CSCEEEEEEEEEEEESSSSC--TTSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEEEEEEECCCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 88978999984044478655--5606899999999998737998879999349987999999999999999837998899
Q ss_pred EEC-CCCHHHHHHHHCCCEEEECCCCEEEEECCCEECCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 936-7522464785305906865887477702300100012265323940078961256655776447899999999999
Q 005581 217 YVP-VCGEKEYYLACACEELYAPPSAYFSLYGLTVQASFLGGVLEKVGIEPQVQRIGKYKSAGDQLTRKTMSEENCEMLT 295 (690)
Q Consensus 217 yv~-~aas~gY~lAsaaD~I~a~P~s~igs~Gv~~~~~~~~~lL~KlGI~~~~~~~G~yKsa~~p~~~~~~s~e~re~l~ 295 (690)
+++ .|+|+|||||++||+|||+|++.+|++|+.+..+++.++++|+||.++.+++|+||++ .|+ .++++++++.++
T Consensus 377 ~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~-~~~--~~~t~~~~~~l~ 453 (593)
T 3bf0_A 377 SMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV-SIT--RALPPEAQLMMQ 453 (593)
T ss_dssp EEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCC-CTT--SCCCHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHCCEEEECCCCEEECCEEEEECCCHHHHHHHCCCEEEEEECCCCCCC-CCC--CCCCHHHHHHHH
T ss_conf 99987199999999958979988997761041577237567799866960224532554556-867--799999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHHCCC
Q ss_conf 99999999999999974299999999988037654887873688157525168999999981897
Q 005581 296 ALLDNIYGNWLDKVSSTKGKRKEDIERFINDGVYKVERLKEEGFITNVLYDDEVISMLKERLGVQ 360 (690)
Q Consensus 296 ~~l~~~~~~f~~~Va~~Rg~~~~~v~~~~~~~~~~a~eAl~~GLID~i~~~de~~~~l~~~~g~~ 360 (690)
..+++.|..|+..|++.|+++.+.++.++++++|+++||+++||||++++.+++++.+.+.++++
T Consensus 454 ~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~l~ 518 (593)
T 3bf0_A 454 LSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVK 518 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999999999999987599999999996599717999998799767268999999999975999
No 5
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=1.00 E-value=1 Score=199.77 Aligned_cols=169 Identities=18% Similarity=0.150 Sum_probs=141.8
Q ss_pred EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99995211036888787888301799999999998807995689998169995144316889999986199979999886
Q 005581 391 AVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSD 470 (690)
Q Consensus 391 AvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i~~~~~~KPVIA~i~g 470 (690)
.+|.+.|+|.+ .+.+.+.+.|+.+.+++++++|+|+||||||+++++..|+++|+.+ ++||+++++|
T Consensus 28 rii~l~G~I~~-----------~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~~--~~pV~~~v~g 94 (208)
T 2cby_A 28 RIIFLGSEVND-----------EIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLA--PCDIATYAMG 94 (208)
T ss_dssp TEEEECSCBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHC--SSCEEEEEEE
T ss_pred CEEEECCEECH-----------HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECC
T ss_conf 58999379978-----------9999999999999747999977999989799889999999999953--9998999874
Q ss_pred CCCHHHHHHHHHCCE--EEEECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 011799999976395--787067500012442466654779987098321230430145532039999956999999999
Q 005581 471 VAASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSA 548 (690)
Q Consensus 471 ~AaSGGy~iA~aaD~--IvA~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i 548 (690)
.|+|+||||+++||+ |+|.|+|.+|.+...+. ..|..++ .+...+.+
T Consensus 95 ~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~------------------~~G~~~d-------------~~~~~~~l 143 (208)
T 2cby_A 95 MAASMGEFLLAAGTKGKRYALPHARILMHQPLGG------------------VTGSAAD-------------IAIQAEQF 143 (208)
T ss_dssp EEETHHHHHHHTSCTTCEEECTTCEEECCCC-----------------------------------------CHHHHHHH
T ss_pred EEHHHHHHHHHCCCCCCEEECCCCEEEEECCCCC------------------CCCCHHH-------------HHHHHHHH
T ss_conf 8677899999679968789838928998546324------------------5687778-------------99999999
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHH-HHCCCCCCHHHHHHCCCCCCCCCH-HHHHHHH
Q ss_conf 999999999998413999989999-864986558879876976421595-8999999
Q 005581 549 QNAYKLFRDKAAFSRSMTVDKMEE-YAQGRVWTGNDAASRGLVDALGGF-SRAVAIA 603 (690)
Q Consensus 549 ~~~y~~F~~~Va~~R~~~~~~~~~-i~~Grv~tg~eAle~GLVD~ig~~-~~ai~~a 603 (690)
+..++.|.+.+++.|+++.+++++ +.+|++|+|+||+++||||++++. +++++.+
T Consensus 144 ~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~ 200 (208)
T 2cby_A 144 AVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQ 200 (208)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC-------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECHHHHHHCCCCCEECCCHHHHHHHH
T ss_conf 999999999999874969999999976896782999998699828667638999999
No 6
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=1.00 E-value=1 Score=197.24 Aligned_cols=165 Identities=12% Similarity=0.147 Sum_probs=139.2
Q ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99952110368887878883017999999999988079956899981699951443168899999861999799998860
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i~~~~~~KPVIA~i~g~ 471 (690)
+|.+.|+|.+ .+.+.+.++|+.+..++++++|+|+||||||++.++..|++.|+.+ ++||+++++|.
T Consensus 47 ii~l~g~I~~-----------~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I~~~i~~~--~~pV~t~v~G~ 113 (218)
T 1y7o_A 47 IIMLTGPVED-----------NMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFI--KADVQTIVMGM 113 (218)
T ss_dssp EEEEESCBCH-----------HHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEE
T ss_pred EEEEECEECH-----------HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCE
T ss_conf 8999079988-----------9999999999999846999878999989597879999999999963--99989999057
Q ss_pred CCHHHHHHHHHCCE--EEEECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 11799999976395--7870675000124424666547799870983212304301455320399999569999999999
Q 005581 472 AASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ 549 (690)
Q Consensus 472 AaSGGy~iA~aaD~--IvA~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~ 549 (690)
|+||||+|+++||+ |+|.|++.+|...+.+..+ ..|..+ +.+...+.++
T Consensus 114 AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g~~----------------~~G~~~-------------di~~~~~~i~ 164 (218)
T 1y7o_A 114 AASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTG----------------GGTQQT-------------DMAIAPEHLL 164 (218)
T ss_dssp EETHHHHHHTTSCTTCEEECTTCEEECCCCC-------------------------------------------CHHHHH
T ss_pred EHHHHHHHHHCCCCCCEEECCCCEEEEECCCCCCC----------------CCCCHH-------------HHHHHHHHHH
T ss_conf 37789999975983767885880899833521444----------------767778-------------8999999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCCHHH
Q ss_conf 99999999998413999989999864-98655887987697642159589
Q 005581 550 NAYKLFRDKAAFSRSMTVDKMEEYAQ-GRVWTGNDAASRGLVDALGGFSR 598 (690)
Q Consensus 550 ~~y~~F~~~Va~~R~~~~~~~~~i~~-Grv~tg~eAle~GLVD~ig~~~~ 598 (690)
..++.|.+.+++.|+++.+++++++. +++|+|+||+++||||++++.++
T Consensus 165 ~~~~~~~~~~a~~~G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~~~ 214 (218)
T 1y7o_A 165 KTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS 214 (218)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECHHHHHHCCCCCEECCCCC
T ss_conf 99999999999884979999999871797894999998799859767677
No 7
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=1.00 E-value=1 Score=194.49 Aligned_cols=161 Identities=17% Similarity=0.251 Sum_probs=137.6
Q ss_pred EEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99952110368887878883017999999999988079956899981699951443168899999861999799998860
Q 005581 392 VIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMSDV 471 (690)
Q Consensus 392 vI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i~~~~~~KPVIA~i~g~ 471 (690)
+|.+.|+|.+ .+.+.+.+.|+.+..++.+++|+|+||||||++.++..|+++|+.+ ++||+++++|.
T Consensus 28 ii~l~g~I~~-----------~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~--~~pV~~~v~g~ 94 (193)
T 1yg6_A 28 VIFLTGQVED-----------HMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFI--KPDVSTICMGQ 94 (193)
T ss_dssp EEEEESSBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEEEE
T ss_pred EEEECCEECH-----------HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEEEEE
T ss_conf 8999279868-----------9999999999999836999988999989698889999999999962--99989999101
Q ss_pred CCHHHHHHHHHCCE--EEEECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 11799999976395--7870675000124424666547799870983212304301455320399999569999999999
Q 005581 472 AASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKSAQ 549 (690)
Q Consensus 472 AaSGGy~iA~aaD~--IvA~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~i~ 549 (690)
|||+||||+++||+ |+|.|+|.+|.+..... ..|..+++ ...++.++
T Consensus 95 AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~------------------~~G~~~d~-------------~~~~~~l~ 143 (193)
T 1yg6_A 95 AASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGG------------------YQGQATDI-------------EIHAREIL 143 (193)
T ss_dssp EETHHHHHHHTSCTTCEEECTTCEEEECCCEEE------------------EEEEHHHH-------------HHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEECCCEEEEEECCCC------------------CCCCHHHH-------------HHHHHHHH
T ss_conf 887999999778847678705968999816424------------------55788999-------------99999999
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCC-CCCCHHHHHHCCCCCCCCCH
Q ss_conf 999999999984139999899998649-86558879876976421595
Q 005581 550 NAYKLFRDKAAFSRSMTVDKMEEYAQG-RVWTGNDAASRGLVDALGGF 596 (690)
Q Consensus 550 ~~y~~F~~~Va~~R~~~~~~~~~i~~G-rv~tg~eAle~GLVD~ig~~ 596 (690)
..++.|.+.+++.|+++.+++++++++ +.|+|+||+++||||++...
T Consensus 144 ~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~~~GliD~i~~~ 191 (193)
T 1yg6_A 144 KVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH 191 (193)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCEEECHHHHHHCCCCCEECCC
T ss_conf 999999999998719799999998628958729999986997773677
No 8
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=1.00 E-value=1 Score=193.29 Aligned_cols=168 Identities=16% Similarity=0.155 Sum_probs=139.2
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 79999521103688878788830179999999999880799568999816999514431688999998619997999988
Q 005581 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS 469 (690)
Q Consensus 390 IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i~~~~~~KPVIA~i~ 469 (690)
-.+|.+.|+|.+ .+.+.+++.|..+..++..|+|+|+||||||+++++..|+++|+.+ ++||++++.
T Consensus 82 erII~l~G~I~d-----------~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~ag~aIyd~I~~~--k~pV~t~v~ 148 (277)
T 1tg6_A 82 ERIVCVMGPIDD-----------SVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYI--LNPICTWCV 148 (277)
T ss_dssp TTEEEEESSBCH-----------HHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHS--CSCEEEEEE
T ss_pred CCEEEECCEECH-----------HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEEC
T ss_conf 738998279988-----------9999999999999854999977999979798889999999999853--999899986
Q ss_pred CCCCHHHHHHHHHCCE--EEEECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 6011799999976395--78706750001244246665477998709832123043014553203999995699999999
Q 005581 470 DVAASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKS 547 (690)
Q Consensus 470 g~AaSGGy~iA~aaD~--IvA~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~ 547 (690)
|.|||+||||+++||+ |+|.|+|.+|.+.+.++. .|..++ .+...+.
T Consensus 149 G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~------------------~G~a~D-------------i~~~a~e 197 (277)
T 1tg6_A 149 GQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA------------------RGQATD-------------IAIQAEE 197 (277)
T ss_dssp EEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC------------------CSSHHH-------------HHHHHHH
T ss_pred CEEHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCC------------------CCCHHH-------------HHHHHHH
T ss_conf 481888999997798587798549789996463156------------------576888-------------9999999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCC-CCCCHHHHHHCCCCCCCCCHH-HHHH
Q ss_conf 99999999999984139999899998649-865588798769764215958-9999
Q 005581 548 AQNAYKLFRDKAAFSRSMTVDKMEEYAQG-RVWTGNDAASRGLVDALGGFS-RAVA 601 (690)
Q Consensus 548 i~~~y~~F~~~Va~~R~~~~~~~~~i~~G-rv~tg~eAle~GLVD~ig~~~-~ai~ 601 (690)
++..++.|.+.+++.||++.+++++++++ +.|+|+||+++||||+|+... +.+.
T Consensus 198 i~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~lta~EAle~GLID~I~~~~~~~~~ 253 (277)
T 1tg6_A 198 IMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGE 253 (277)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSSCC----
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCCHHHCC
T ss_conf 99999999999998719799999998746954479999977998786676365501
No 9
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=1.00 E-value=1 Score=192.09 Aligned_cols=172 Identities=21% Similarity=0.231 Sum_probs=138.3
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99857999952110368887878883017999999999988079956899981699951443168899999861999799
Q 005581 386 GGDQIAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVI 465 (690)
Q Consensus 386 ~~~~IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i~~~~~~KPVI 465 (690)
.+++|++|+++|+|.+ .+.+.+.++|+++.+ +++|+|+|++|||||++.++..|++.|+.. +||||
T Consensus 6 ~~~~V~vI~i~g~I~~-----------~~~~~l~~~l~~a~~-~~~~~Ivl~inspGG~v~~~~~i~~~i~~~--~~PVi 71 (230)
T 3viv_A 6 AKNIVYVAQIKGQITS-----------YTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAMMNIVQRIQQS--KIPVI 71 (230)
T ss_dssp CCCEEEEEEEESCBCH-----------HHHHHHHHHHHHHHH-TTCSEEEEEEEBSCEEHHHHHHHHHHHHTC--SSCEE
T ss_pred CCCEEEEEEEECEECH-----------HHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHC--CCCEE
T ss_conf 8984999999077889-----------999999999999853-999789999869986889999999999968--98999
Q ss_pred EEE---CCCCCHHHHHHHHHCCEEEEECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHH
Q ss_conf 998---86011799999976395787067500012442466654779987098321230430145532039999956999
Q 005581 466 ASM---SDVAASGGYYMAMAAGTILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAE 542 (690)
Q Consensus 466 A~i---~g~AaSGGy~iA~aaD~IvA~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~ 542 (690)
+++ +|.|+||||+|+++||+++|.|++.+|+++++...+.. |.. + .+.
T Consensus 72 a~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~~~~-------G~~---------------~--~~~----- 122 (230)
T 3viv_A 72 IYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQN-------GSI---------------I--EAP----- 122 (230)
T ss_dssp EEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEECTT-------SCE---------------E--ECC-----
T ss_pred EEEECCCCEEHHHHHHHHHHCCCEEECCCCEEEECCCEECCCCC-------CCC---------------H--HHH-----
T ss_conf 99956998876899999985584369899989855535637998-------873---------------2--789-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH-CCCCCCHHHHHHCCCCCCCCC-HHHHHHHH
Q ss_conf 99999999999999999841399998999986-498655887987697642159-58999999
Q 005581 543 LFAKSAQNAYKLFRDKAAFSRSMTVDKMEEYA-QGRVWTGNDAASRGLVDALGG-FSRAVAIA 603 (690)
Q Consensus 543 ~~~~~i~~~y~~F~~~Va~~R~~~~~~~~~i~-~Grv~tg~eAle~GLVD~ig~-~~~ai~~a 603 (690)
+.+...+..|++.+++.+|.+.+.+++++ +++.|+++||+++||||++.+ .+++++++
T Consensus 123 ---~k~~~~~~~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~~~~ll~~~ 182 (230)
T 3viv_A 123 ---PAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKKS 182 (230)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSSHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEECHHHHHHCCCCEEECCCHHHHHHHH
T ss_conf ---999999999999999996949999999996697336999997698427658999999985
No 10
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=1.00 E-value=1 Score=185.48 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=129.1
Q ss_pred EEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 79999521103688878788830179999999999880799568999816999514431688999998619997999988
Q 005581 390 IAVIRASGSISRVRSPLSLSSSGIIGEQLIEKIRKVRESKRYKAAIIRIDSPGGDALASDLMWREIRLLSESKPVIASMS 469 (690)
Q Consensus 390 IAvI~i~G~I~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~VkaVVLrinSpGG~~~as~~i~~~i~~~~~~KPVIA~i~ 469 (690)
-.+|.+.|+|.+ .+.+.+++.|..+..++. ++|+|+||||||+++++..|+++|+.+ ++||++++.
T Consensus 39 ~riI~l~G~I~~-----------~~a~~i~~~L~~l~~~~~-k~I~l~INSPGGsv~a~~~I~~~i~~~--~~pV~t~v~ 104 (215)
T 2f6i_A 39 KRIIYLTDEINK-----------KTADELISQLLYLDNINH-NDIKIYINSPGGSINEGLAILDIFNYI--KSDIQTISF 104 (215)
T ss_dssp TTEEEECSCBCH-----------HHHHHHHHHHHHHHHHCC-SCEEEEEEECCBCHHHHHHHHHHHHHS--SSCEEEEEE
T ss_pred CEEEEECCEECH-----------HHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEEE
T ss_conf 618999068977-----------899999999999983799-837999979798889999999999953--999799991
Q ss_pred CCCCHHHHHHHHHCCE--EEEECCCEECCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 6011799999976395--78706750001244246665477998709832123043014553203999995699999999
Q 005581 470 DVAASGGYYMAMAAGT--ILAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGKYAEVLAAEQRPFRPDEAELFAKS 547 (690)
Q Consensus 470 g~AaSGGy~iA~aaD~--IvA~p~t~~GSIGV~~~~~~~~~l~~klGv~~~~i~~g~~k~~~~~~~~~~s~~~~~~~~~~ 547 (690)
|.|||+||||+++||+ |+|.|+|.+|....... ..|..+++. ...+.
T Consensus 105 g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~------------------~~G~~~di~-------------~~~~e 153 (215)
T 2f6i_A 105 GLVASMASVILASGKKGKRKSLPNCRIMIHQPLGN------------------AFGHPQDIE-------------IQTKE 153 (215)
T ss_dssp EEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCS------------------CC---------------------CHHH
T ss_pred EEHHHHHHHHHHCCCCCCEEECCCCEEEEECCCCC------------------CCCCHHHHH-------------HHHHH
T ss_conf 17186899999759826678768978998243012------------------577667789-------------99999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC-CHHHHHHCCCCCCCCCHH
Q ss_conf 99999999999984139999899998649865-588798769764215958
Q 005581 548 AQNAYKLFRDKAAFSRSMTVDKMEEYAQGRVW-TGNDAASRGLVDALGGFS 597 (690)
Q Consensus 548 i~~~y~~F~~~Va~~R~~~~~~~~~i~~Grv~-tg~eAle~GLVD~ig~~~ 597 (690)
++.....|.+.+++.|+++.+++++++++++| +|+||+++||||+|+...
T Consensus 154 l~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~~ 204 (215)
T 2f6i_A 154 ILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETK 204 (215)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCCS
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEECCHHHHHHCCCCCEECCCC
T ss_conf 999999999999998496999999987179351799999879987866886
Done!