Query 005583
Match_columns 690
No_of_seqs 234 out of 833
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 01:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00148 potassium transporter 100.0 1E-224 2E-229 1885.2 56.5 689 1-690 94-785 (785)
2 PLN00151 potassium transporter 100.0 5E-223 1E-227 1870.4 56.8 675 1-690 170-852 (852)
3 PLN00149 potassium transporter 100.0 3E-222 6E-227 1867.3 57.3 681 1-690 90-779 (779)
4 PLN00150 potassium ion transpo 100.0 1E-220 3E-225 1850.9 57.1 666 1-690 114-779 (779)
5 TIGR00794 kup potassium uptake 100.0 3E-200 6E-205 1678.1 53.8 623 1-690 65-688 (688)
6 PRK10745 trkD potassium transp 100.0 3E-175 6E-180 1456.1 45.5 541 1-690 79-622 (622)
7 PF02705 K_trans: K+ potassium 100.0 2E-168 5E-173 1389.9 34.0 469 1-509 66-534 (534)
8 COG3158 Kup K+ transporter [In 100.0 6E-160 1E-164 1303.8 42.1 542 1-689 85-626 (627)
9 TIGR00911 2A0308 L-type amino 90.0 0.63 1.4E-05 52.8 6.7 86 105-194 166-255 (501)
10 PRK10435 cadB lysine/cadaverin 74.7 52 0.0011 36.8 13.6 23 107-129 124-146 (435)
11 TIGR00907 2A0304 amino acid pe 74.1 14 0.0003 41.8 8.9 25 105-129 144-168 (482)
12 COG0531 PotE Amino acid transp 73.9 20 0.00044 39.4 10.1 176 103-285 133-324 (466)
13 TIGR00909 2A0306 amino acid tr 73.3 15 0.00032 40.6 8.7 168 106-286 135-317 (429)
14 PRK15049 L-asparagine permease 71.8 31 0.00066 39.6 11.1 22 107-128 147-168 (499)
15 TIGR03813 put_Glu_GABA_T putat 71.2 46 0.001 37.6 12.3 19 385-403 434-452 (474)
16 PRK10655 potE putrescine trans 67.2 73 0.0016 35.5 12.6 43 106-148 125-170 (438)
17 PF13520 AA_permease_2: Amino 66.2 19 0.00041 39.5 7.6 222 104-341 118-366 (426)
18 TIGR00930 2a30 K-Cl cotranspor 65.3 40 0.00086 42.3 10.9 25 104-128 203-227 (953)
19 PF14362 DUF4407: Domain of un 64.9 55 0.0012 35.0 10.7 83 326-409 15-111 (301)
20 PRK10580 proY putative proline 59.7 72 0.0016 35.9 10.9 25 383-407 423-447 (457)
21 TIGR03810 arg_ornith_anti argi 57.9 1.1E+02 0.0024 34.6 12.0 44 243-286 274-317 (468)
22 KOG3643 GABA receptor [Signal 56.6 12 0.00025 42.8 3.9 106 263-372 208-324 (459)
23 TIGR00908 2A0305 ethanolamine 50.4 70 0.0015 35.6 8.8 25 106-130 123-147 (442)
24 PRK10249 phenylalanine transpo 49.0 1E+02 0.0022 34.8 10.0 101 107-209 138-246 (458)
25 PRK10746 putative transport pr 48.5 1.1E+02 0.0024 34.7 10.2 26 385-410 427-452 (461)
26 PRK11357 frlA putative fructos 47.8 2E+02 0.0044 32.1 12.0 44 106-149 129-175 (445)
27 COG4059 MtrE Tetrahydromethano 45.8 19 0.00042 37.8 3.2 30 380-409 257-286 (304)
28 PRK10238 aromatic amino acid t 45.6 2.1E+02 0.0046 32.3 11.8 113 107-223 129-250 (456)
29 TIGR00910 2A0307_GadC glutamat 43.8 1.9E+02 0.0041 33.4 11.2 46 182-227 202-249 (507)
30 PRK10644 arginine:agmatin anti 42.9 86 0.0019 35.1 8.1 23 107-129 128-150 (445)
31 KOG3145 Cystine transporter Cy 42.0 26 0.00056 38.4 3.6 88 107-205 212-339 (372)
32 TIGR01773 GABAperm gamma-amino 41.9 3.6E+02 0.0077 30.2 12.8 45 106-150 128-175 (452)
33 PRK11021 putative transporter; 36.1 4.6E+02 0.0099 29.0 12.3 27 105-131 116-142 (410)
34 PF06570 DUF1129: Protein of u 35.9 1.5E+02 0.0032 30.2 7.9 21 384-404 179-199 (206)
35 KOG4742 Predicted chitinase [G 32.5 20 0.00044 38.8 1.0 34 196-238 171-210 (286)
36 TIGR00906 2A0303 cationic amin 32.0 5.9E+02 0.013 29.9 12.9 44 105-148 162-208 (557)
37 COG2179 Predicted hydrolase of 30.2 11 0.00025 37.9 -1.2 71 611-686 44-118 (175)
38 PRK13108 prolipoprotein diacyl 28.9 2E+02 0.0044 33.4 8.2 20 326-345 23-42 (460)
39 PRK11387 S-methylmethionine tr 27.8 4E+02 0.0086 30.2 10.3 21 108-128 133-153 (471)
40 TIGR03428 ureacarb_perm permea 26.1 1E+03 0.022 27.0 14.4 26 104-129 144-169 (475)
41 PF05545 FixQ: Cbb3-type cytoc 25.9 55 0.0012 26.0 2.2 29 393-421 19-47 (49)
42 TIGR00905 2A0302 transporter, 25.7 5E+02 0.011 29.4 10.6 24 106-129 131-154 (473)
43 PF08733 PalH: PalH/RIM21; In 25.7 3.4E+02 0.0073 30.3 9.0 137 266-411 168-323 (348)
44 PRK11492 hyfE hydrogenase 4 me 22.7 7.8E+02 0.017 25.7 10.5 147 265-427 57-215 (216)
45 PF00324 AA_permease: Amino ac 21.5 58 0.0013 36.7 2.2 33 177-209 203-237 (478)
46 TIGR01940 nqrE NADH:ubiquinone 20.1 3E+02 0.0066 28.6 6.7 47 305-351 14-62 (200)
47 PF02660 G3P_acyltransf: Glyce 20.1 8.9E+02 0.019 24.3 10.1 84 317-410 91-176 (178)
No 1
>PLN00148 potassium transporter; Provisional
Probab=100.00 E-value=1.1e-224 Score=1885.24 Aligned_cols=689 Identities=85% Similarity=1.365 Sum_probs=622.6
Q ss_pred CCCchhhHHHHhhhccCCccCCCCCcccccccccccCCCcCccCCchhHHHHhhcccchhhhhHHhhhhhhhhhcCcccc
Q 005583 1 MSGGTFALYSLLCRHAKFSLLPNQQAADEELSTYKYGNAVHAVGSSPFKRFLEKHKKLRTVLLVVVLFGACMVIGDGVLT 80 (690)
Q Consensus 1 GEGGtFALYSLi~R~ak~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~~~llG~~m~igDGvlT 80 (690)
|||||||||||+|||+|++++||||++|+++++|+.......+++.++|++||||+++|.+++++|++|+||++|||+||
T Consensus 94 GEGG~fALysLl~r~~~~~~~pn~~~~d~~ls~~~~~~~~~~~~~~~~k~~lE~~~~~~~~ll~l~l~G~am~~gDgvlT 173 (785)
T PLN00148 94 GEGGTFALYSLLCRHAKLSLLPNQQAADEELSAYKYGPSTQTVGSSPLKRFLEKHKRLRTALLLVVLFGACMVIGDGVLT 173 (785)
T ss_pred CCchHHHHHHHHHHhcccccCccchhhhhhhhhhccCccccchhhhHHHHHhhhchHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999997753333346788999999999999999999999999999999999
Q ss_pred ccceeeeccccceeecCCCCCceEEehhHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHhhcccCcceeeec
Q 005583 81 PAISVLSSVSGLQVTENKLTDGELLILACVILVGLFALQHFGTHKVAVMFAPIIIVWLISIFAVGLYNVIHWNPKVISAI 160 (690)
Q Consensus 81 PAiSVlSAVeGL~v~~p~~~~~~vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWF~~i~~~Giyni~~~~p~VlkAl 160 (690)
|||||||||||||+..|++++++||+|||+||++||++|||||+|||++|||||++||++||++|+|||++|||+|||||
T Consensus 174 PAISVLSAVeGl~v~~p~~~~~~vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~Al 253 (785)
T PLN00148 174 PAISVLSSVSGLQVTETKLTDGELVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHAL 253 (785)
T ss_pred hhHHHHHHhccceecCCCCCCCeehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhc
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhcCcceeeeecceeheecchhhhhccCCCCcccceeeehhhhhhhHHHhhcccchhhhccCCCccCCcce
Q 005583 161 SPLYIIKYFRETGKTGWISLGGLLLCITGTEAMFADLGHFTALSIRLAFTFFVYPCLVVQYMGQAAYLSKNLDKIPNSFY 240 (690)
Q Consensus 161 nP~ya~~f~~~~~~~g~~~LG~V~LciTGaEALyADlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFy 240 (690)
||+|+++||++||++||.+||||+||+||+|||||||||||++|||+||+++|||||+|||+||||||++||++.+||||
T Consensus 254 nP~y~~~ff~~~~~~g~~~LGgV~L~iTGaEALyADlGHFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFf 333 (785)
T PLN00148 254 SPYYIIKFFRVTGKDGWISLGGILLSITGTEAMFADLGHFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNIPSIPNSFY 333 (785)
T ss_pred CHHHHHHHHHhCCCceEEeecchheeccchhhhhhhccCCCccceEEeeeehHHHHHHHHHcchHHHHhcCcccccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcchHHHHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCceeEEecCCccCCceeechhhHHHHHHHhheeEEec
Q 005583 241 DSIPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTSRHIYGQIYIPEINWILMILTLAITIGFQ 320 (690)
Q Consensus 241 ~~iP~~~~~p~~vlAtlAaIIASQAlISg~FSli~Qai~Lg~fPrvki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~ 320 (690)
+++|+|++||++++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|++||++||
T Consensus 334 ~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~ 413 (785)
T PLN00148 334 DSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFR 413 (785)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHH
Q 005583 321 DTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIFLAGAFLLFFLAIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMY 400 (690)
Q Consensus 321 ~s~~l~~AYGlaV~~~MliTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~ 400 (690)
||++||||||+||++||++||+|+++||+.+||||++++++|+++|+++|++|||||+.||+||||+||++|++++++|+
T Consensus 414 ~s~~la~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~ 493 (785)
T PLN00148 414 DTTLIGNAYGLACMTVMFITTFLMALVIIFVWQKSIILAALFLLFFGFIEGVYLSAALMKVPQGGWVPLVLSAIFMSIMY 493 (785)
T ss_pred cchhHHHhhhhheeeHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhHHHHHhhhhccCCChHHHHhcCCCCCCccccceEEEEeCCCCCchhHHHHhhhhCcccceEEEEEEEEEeccccc
Q 005583 401 IWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYV 480 (690)
Q Consensus 401 ~W~~G~~~~~~~~~~~~~~~~~l~~l~~~~~~~rvpG~~~f~t~~~~~vP~~~~h~l~~~~~~h~~~vfv~v~~~~~P~v 480 (690)
+||||++++++++.+|+++++++.++.++.++.||||+|+|||++++|+|++|.||++|+|++||++||||||++|+|+|
T Consensus 494 ~W~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~RVpG~~vf~t~~~~gvP~~f~h~~~~~~~lHe~~Vfv~ik~~~vP~V 573 (785)
T PLN00148 494 IWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYV 573 (785)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecCCCCCCCHHHHHHHHhCCcccceEEEEEEEECccccc
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEEeeecccCChhhHHHHHHHHHHHHHhhhccCCCCCCC-CcccCCccceeecccccc
Q 005583 481 SPEERFLIGRVCPRPYRMYRCIVRYGYKDVQRDDGDFENQLIQSIAEFIQMEAEEPQFSSS-ESSLDGRMAVISTRNVES 559 (690)
Q Consensus 481 ~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~f~~~lv~~l~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 559 (690)
|++|||+++++++++|++|||++||||||.+++++|||++|+++|++||+.|+.+.+...+ .++.|+++++++++++.+
T Consensus 574 ~~~eR~~v~~i~~~~yr~~r~vvryGy~d~~~~~~dFe~~Lv~~L~~FIr~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (785)
T PLN00148 574 SPEERFLIGRVCPRPYRMYRCIVRYGYKDIQRDDGDFENMLVQSIAEFIQMEAEEPQSSASESSSNDGRMAVISTRDVQS 653 (785)
T ss_pred ChhheEEEEEecCCCceEEEEEEEEccCcccccchHHHHHHHHHHHHHHHhhhhcccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999899999999999999999999854210000 111234455554322111
Q ss_pred CccccccccccccCCCccccccccccccccccccccCCc--cccccceeccCCCCCCChhHHHHHHHHHHHHHcCcEEEe
Q 005583 560 NTNLIISVQEEDIGSSSSIQSSKSLTLQSLQSVFDEDNP--VRRRQVRFQLPSDPGMDPAVREELMDLIQAKEAGIAYIM 637 (690)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIl 637 (690)
.+.......+. .++.+...++++...++.++..+.+.+ .++++++++.+++.+.+++++||+++|++|||+||+||+
T Consensus 654 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~~L~~A~eaGVvYIl 732 (785)
T PLN00148 654 SSLLMVSEQEL-ADIDDSIQSSKSLTLQSLQSAYEDENPGQSRRRRVRFQLPENPGMDPSVREELMDLIEAKEAGVAYIM 732 (785)
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccccceeecccccccccchHHHHHHHHHHHHHcCcEEEe
Confidence 00000000000 000000111111122223333333333 346778887765555678999999999999999999999
Q ss_pred eceEEEecCCCchHHHHHHHHHHHHHhhhcCCCCcccccCCCCEEEeeeEEEC
Q 005583 638 GHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPHISLIEVGMIYYV 690 (690)
Q Consensus 638 G~~~v~ar~~Ss~~Kr~vIn~~Y~FLRkNcR~~~~~L~IP~~~lleVGm~y~v 690 (690)
||++||||++|+|+||++||++|+|||||||+|.++|+|||+||+||||+|||
T Consensus 733 G~s~v~Ar~~Ss~~KKivIn~~Y~FLRkNcR~~~~~L~IPh~~LleVGM~Y~V 785 (785)
T PLN00148 733 GHSYVKARRSSSFLKKLAIDIGYSFLRKNCRGPAVALNIPHISLIEVGMIYYV 785 (785)
T ss_pred ccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEcceEEEC
Confidence 99999999999999999999999999999999999999999999999999997
No 2
>PLN00151 potassium transporter; Provisional
Probab=100.00 E-value=4.5e-223 Score=1870.42 Aligned_cols=675 Identities=45% Similarity=0.842 Sum_probs=608.3
Q ss_pred CCCchhhHHHHhhhccCCccCCCCCcccccccccccC-CCcCccCCchhHHHHhhcccchhhhhHHhhhhhhhhhcCccc
Q 005583 1 MSGGTFALYSLLCRHAKFSLLPNQQAADEELSTYKYG-NAVHAVGSSPFKRFLEKHKKLRTVLLVVVLFGACMVIGDGVL 79 (690)
Q Consensus 1 GEGGtFALYSLi~R~ak~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~le~~~~~~~~l~~~~llG~~m~igDGvl 79 (690)
|||||||||||+|||+|++++||||++|+++|+|+.+ ++++.++++++|++||||+++|.+|++++++|+||+||||+|
T Consensus 170 GEGGtfALySLl~R~a~~~llpnq~~~de~ls~~~~~~~~~~~~~~~~~k~~lE~s~~~k~~ll~l~l~GtamviGDGvl 249 (852)
T PLN00151 170 GEGGTFALYSLICRHAKVSLLPNQLPSDERISSFRLKLPTPELERSLKIKERLETSSLLKKLLLLLVLAGTSMVIGDGVL 249 (852)
T ss_pred CCchHHHHHHHHHHhcCcCccccccchHhhhhhhcccCCccccchhHHHHHHhhhhHHHHHHHHHHHHHhHHHHhccccc
Confidence 9999999999999999999999999999999999877 566667888999999999999999999999999999999999
Q ss_pred cccceeeeccccceeecCCCCCceEEehhHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHhhcccCcceeee
Q 005583 80 TPAISVLSSVSGLQVTENKLTDGELLILACVILVGLFALQHFGTHKVAVMFAPIIIVWLISIFAVGLYNVIHWNPKVISA 159 (690)
Q Consensus 80 TPAiSVlSAVeGL~v~~p~~~~~~vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWF~~i~~~Giyni~~~~p~VlkA 159 (690)
||||||||||||||+..|++++++||+|||+||++||++|||||+|||++|||||++||++||++|+|||++|||+||||
T Consensus 250 TPAISVLSAVeGL~v~~p~l~~~~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~A 329 (852)
T PLN00151 250 TPAMSVMSAVSGLKVGVPGFGQDAVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRA 329 (852)
T ss_pred ccchhhhhhhccccccCCcCCCCeehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHhhcCcceeeeecceeheecchhhhhccCCCCcccceeeehhhhhhhHHHhhcccchhhhccCCCccCCcc
Q 005583 160 ISPLYIIKYFRETGKTGWISLGGLLLCITGTEAMFADLGHFTALSIRLAFTFFVYPCLVVQYMGQAAYLSKNLDKIPNSF 239 (690)
Q Consensus 160 lnP~ya~~f~~~~~~~g~~~LG~V~LciTGaEALyADlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npF 239 (690)
|||+|+++||++||++||.+||||+||+||+|||||||||||++|||+||+|+|||||+|||+||||||++||++.+|||
T Consensus 330 lnP~Y~~~Ff~~~~~~gw~~LGgVvLciTGaEALfADLGHFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~~~~npF 409 (852)
T PLN00151 330 FNPVYIYYFFKRNSTKAWSALGGCVLCATGSEAMFADLGYFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPDSAEQIF 409 (852)
T ss_pred hCHHHHHHHHHhCCCceEEEecceeeeeccchhhhcccCCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcchHHHHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCceeEEecCCccCCceeechhhHHHHHHHhheeEEe
Q 005583 240 YDSIPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTSRHIYGQIYIPEINWILMILTLAITIGF 319 (690)
Q Consensus 240 y~~iP~~~~~p~~vlAtlAaIIASQAlISg~FSli~Qai~Lg~fPrvki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F 319 (690)
|+++|+|++||+|++||+||||||||+|||+|||++||++||||||+||+|||++++||||||+|||+||++|++||++|
T Consensus 410 y~svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F 489 (852)
T PLN00151 410 FSSVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSF 489 (852)
T ss_pred HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHH
Q 005583 320 QDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIFLAGAFLLFFLAIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVM 399 (690)
Q Consensus 320 ~~s~~l~~AYGlaV~~~MliTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM 399 (690)
|||++||||||+||++||++||||+++||+.+||||++++++|+++|+++|++|||||+.||+||||+||++|++++++|
T Consensus 490 ~~s~~l~~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~F~~ie~~f~sA~l~Ki~~GGW~Pl~la~v~~~iM 569 (852)
T PLN00151 490 RSITDIGNAYGIAEVGVMMVSTILVTLVMLLIWQTNIFLVLCFPVVFLSVELVFFSSVLSSVGDGGWIPLVFASVFLCIM 569 (852)
T ss_pred cCHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhHHHHHhhhhccCCChHHHHhcCCCCCCccccceEEEEeCCCCCchhHHHHhhhhCcccceEEEEEEEEEecccc
Q 005583 400 YIWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPY 479 (690)
Q Consensus 400 ~~W~~G~~~~~~~~~~~~~~~~~l~~l~~~~~~~rvpG~~~f~t~~~~~vP~~~~h~l~~~~~~h~~~vfv~v~~~~~P~ 479 (690)
++||||++++++++.+|+++++++.++.++.++.||||+|+|||++++|+|++|.||++|+|++||++||||||++|+|+
T Consensus 570 ~~W~yG~~~~~~~~~~~~vs~~~~~~L~~~~~~~RVpGiglf~t~~~~gvP~~f~h~i~~~~alHe~~Vfv~ik~~~vP~ 649 (852)
T PLN00151 570 YIWNYGSKLKYQSEVRQKLSMDLMRELGSNLGTIRAPGIGLLYNELVKGIPAIFGHFLTTLPAIHSTIIFVCIKYVPVPV 649 (852)
T ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecCCCCCCCHHHHHHHHhCCcccceEEEEEEEECcccc
Confidence 99999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEecCCCCcEEEEEEEEeeecccC-ChhhHHHHHHHHHHHHHhhhccCCCCCC--CCcccCC---ccceee
Q 005583 480 VSPEERFLIGRVCPRPYRMYRCIVRYGYKDVQR-DDGDFENQLIQSIAEFIQMEAEEPQFSS--SESSLDG---RMAVIS 553 (690)
Q Consensus 480 v~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~-~~~~f~~~lv~~l~~~i~~~~~~~~~~~--~~~~~~~---~~~~~~ 553 (690)
||++|||+++++++++|++|||++||||||.++ ++++||++|+++|++|||.|+.+..... +.+.+++ +++...
T Consensus 650 V~~~eR~lv~ri~~~~~~~yr~vvrYGY~D~~~~~~~dFe~~Lv~~l~~fi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (852)
T PLN00151 650 VPQEERFLFRRVCPKDYHMFRCIARYGYKDVRKENHQAFEQLLIESLEKFIRREAQERALESDGNDDTDDEDSVTSSRVL 729 (852)
T ss_pred cChhheEEEEEcCCCCCCEEEEEEEEeecccccccchHHHHHHHHHHHHHHHhhhhhccccccccccccccccccccccc
Confidence 999999999999999999999999999999976 8899999999999999999875321000 0000010 111111
Q ss_pred ccccccCccccccccccccCCCcccccccccccc-ccccccccCCccccccceeccCCCCCCChhHHHHHHHHHHHHHcC
Q 005583 554 TRNVESNTNLIISVQEEDIGSSSSIQSSKSLTLQ-SLQSVFDEDNPVRRRQVRFQLPSDPGMDPAVREELMDLIQAKEAG 632 (690)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~eEl~~L~~A~eaG 632 (690)
+.+..+... .+ . ...... .+++.+.+ +..+. +.+.+. .+++++ ++.+++++||+++|++|||+|
T Consensus 730 ~~~~~~~~~--~~---~--~~~~~~-~~~~~~~~~~~~~~-~~~~~~-~~~~~~-----~~~~~~~~~El~~l~~a~e~G 794 (852)
T PLN00151 730 IAPNGSVYS--LG---V--PLLADY-RLTSKPIPEASTSE-EVSPVL-PSSSMS-----SDEDQSLEYELSFIREAKESG 794 (852)
T ss_pred cCCCccccc--cc---c--cccccc-cccccccccccccc-cccccc-cccccc-----cccCccHHHHHHHHHHHHHcC
Confidence 110000000 00 0 000000 00000000 00000 111110 112222 223578999999999999999
Q ss_pred cEEEeeceEEEecCCCchHHHHHHHHHHHHHhhhcCCCCcccccCCCCEEEeeeEEEC
Q 005583 633 IAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPHISLIEVGMIYYV 690 (690)
Q Consensus 633 VvYIlG~~~v~ar~~Ss~~Kr~vIn~~Y~FLRkNcR~~~~~L~IP~~~lleVGm~y~v 690 (690)
|+||+||++||||++|+|+||++||++|+|||||||+|.++|+|||++|+||||+|||
T Consensus 795 v~yilG~~~v~a~~~S~~~Kk~~in~~Y~fLRkN~R~~~~~L~iP~~~lleVGm~Y~v 852 (852)
T PLN00151 795 VVYLLGHGDVRARKNSWFIKKLVINYFYAFLRKNCRRGIANLSVPHSNIMQVGMTYMV 852 (852)
T ss_pred cEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceEEEC
Confidence 9999999999999999999999999999999999999999999999999999999997
No 3
>PLN00149 potassium transporter; Provisional
Probab=100.00 E-value=2.9e-222 Score=1867.28 Aligned_cols=681 Identities=57% Similarity=1.025 Sum_probs=613.3
Q ss_pred CCCchhhHHHHhhhccCCccCCCCCcccccccccccC-CCc---CccCCchhHHHHhhcccchhhhhHHhhhhhhhhhcC
Q 005583 1 MSGGTFALYSLLCRHAKFSLLPNQQAADEELSTYKYG-NAV---HAVGSSPFKRFLEKHKKLRTVLLVVVLFGACMVIGD 76 (690)
Q Consensus 1 GEGGtFALYSLi~R~ak~~~~~~~~~~d~~~~~~~~~-~~~---~~~~~~~~~~~le~~~~~~~~l~~~~llG~~m~igD 76 (690)
|||||||||||+|||+|++++||||++|+++++|+++ ++. +.+++.++|++||||+.+|+++++++++|+||+|||
T Consensus 90 GEGGtfALysLl~r~~~~~l~pn~~~~d~~ls~~~~~~~~~~~~~~~~~~~~k~~le~~~~~~~~ll~l~l~G~~m~igD 169 (779)
T PLN00149 90 GEGGTFALYSLLCRHARVNSLPNCQLADEELSEYKKDSGSSSMPLSGFGSSLKSTLEKHRVLQRFLLVLALIGTCMVIGD 169 (779)
T ss_pred CCchHHHHHHHHHHhccccCCccccchhhhhhhhhccccccccccchhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999765 221 223568899999999999999999999999999999
Q ss_pred ccccccceeeeccccceeecCCCCCceE-EehhHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHhhcccCcc
Q 005583 77 GVLTPAISVLSSVSGLQVTENKLTDGEL-LILACVILVGLFALQHFGTHKVAVMFAPIIIVWLISIFAVGLYNVIHWNPK 155 (690)
Q Consensus 77 GvlTPAiSVlSAVeGL~v~~p~~~~~~v-v~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWF~~i~~~Giyni~~~~p~ 155 (690)
|+|||||||||||||||+..|+..++.+ |+|||+||++||++||+||+|||++|||||++||++||++|+|||++|||+
T Consensus 170 gvlTPAISVLSAVeGl~v~~~~~~~~~vvv~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~ 249 (779)
T PLN00149 170 GVLTPAISVFSAVSGLELSMSKEHHKYVEVPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPH 249 (779)
T ss_pred cccchhHHHHHHhhcccccCCCccCCceehHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHh
Confidence 9999999999999999999976545445 889999999999999999999999999999999999999999999999999
Q ss_pred eeeecChHHHHHHHhhcCcceeeeecceeheecchhhhhccCCCCcccceeeehhhhhhhHHHhhcccchhhhccCCC--
Q 005583 156 VISAISPLYIIKYFRETGKTGWISLGGLLLCITGTEAMFADLGHFTALSIRLAFTFFVYPCLVVQYMGQAAYLSKNLD-- 233 (690)
Q Consensus 156 VlkAlnP~ya~~f~~~~~~~g~~~LG~V~LciTGaEALyADlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~A~ll~~p~-- 233 (690)
|||||||+|+++||++||++||.+||||+||+||+|||||||||||++|||+||+++|||||+|||+||||||++||+
T Consensus 250 Vl~AlnP~y~~~f~~~~~~~g~~~LGgV~L~iTG~EALyADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~ 329 (779)
T PLN00149 250 VYQALSPYYMYKFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIE 329 (779)
T ss_pred HhhhcCHHHHHHHHHHCCCceeEeecchhhcccchhhhhhcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -ccCCcceeecCCcchHHHHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCceeEEecCCccCCceeechhhHHHHHHH
Q 005583 234 -KIPNSFYDSIPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTSRHIYGQIYIPEINWILMILT 312 (690)
Q Consensus 234 -~~~npFy~~iP~~~~~p~~vlAtlAaIIASQAlISg~FSli~Qai~Lg~fPrvki~hTS~~~~GQIYIP~vNw~Lmi~~ 312 (690)
+.+||||+++|+|++||++++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|
T Consensus 330 ~~~~~pFy~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~ 409 (779)
T PLN00149 330 SDYRIGFYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLC 409 (779)
T ss_pred ccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHH
Confidence 5667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeEEecCchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHH
Q 005583 313 LAITIGFQDTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIFLAGAFLLFFLAIEGVYLSAAFIKVPQGGWVPLVLS 392 (690)
Q Consensus 313 i~vv~~F~~s~~l~~AYGlaV~~~MliTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~K~~~GGW~pl~ia 392 (690)
++||++||||++||||||+||++||++||||+++||+.+|+||++++++|+++|+++|++|||||+.||+||||+|+++|
T Consensus 410 i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~lv~~~~W~~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia 489 (779)
T PLN00149 410 LAVTVGFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWHKSVLLAICFIFFFGTIEALYFSASLIKFLEGAWVPIALS 489 (779)
T ss_pred HhheeEecChHHHHHHhhhhhehHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhHHHHHhhhhccCCChHHHHhcCCCCCCccccceEEEEeCCCCCchhHHHHhhhhCcccceEEEEEEE
Q 005583 393 SVFMVVMYIWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCV 472 (690)
Q Consensus 393 ~~~~~iM~~W~~G~~~~~~~~~~~~~~~~~l~~l~~~~~~~rvpG~~~f~t~~~~~vP~~~~h~l~~~~~~h~~~vfv~v 472 (690)
++++++|++||||++++++++.+++++++++.++.++.++.||||+|+|||++.+|+|++|.||++|+|++||++|||||
T Consensus 490 ~v~~~iM~~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~~~~gvP~~f~h~~~~~~~lhe~~Vfv~i 569 (779)
T PLN00149 490 FIFLLVMYVWHYGTLKRYEFDVQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCI 569 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhccCCCCcccCcEEEEEcCCCCCCCHHHHHHHHhCCcccceEEEEEE
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred EEecccccCCCceEEEEEecCCCCcEEEEEEEEeeecccCChhhHHHHHHHHHHHHHhhhccCCCC-CCCCcccCCccce
Q 005583 473 KSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDVQRDDGDFENQLIQSIAEFIQMEAEEPQF-SSSESSLDGRMAV 551 (690)
Q Consensus 473 ~~~~~P~v~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~f~~~lv~~l~~~i~~~~~~~~~-~~~~~~~~~~~~~ 551 (690)
|++|+|+||++|||+++|++++++++|||++||||||.+++++|||++|+++|++||+.|+.+.+. .++.++.|+++++
T Consensus 570 k~~~vP~V~~~eR~~v~~i~~~~~~~~r~vvryGy~d~~~d~~dFE~~Lve~L~~FI~~e~~~~~~~~~~~~~~~~~~~~ 649 (779)
T PLN00149 570 KSVPVPHVRPEERFLVGRIGPKEYRLYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSEKPEPNGAPENEEGEDERMTV 649 (779)
T ss_pred EECcccccChhheEEEEEecCCCceEEEEEEEEeeccccccchHHHHHHHHHHHHHHHhhhhcccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999753211 1111112445555
Q ss_pred eeccccccCccccccccccccCCCccccccccccccccccccccCCccccccceeccCCCCCCChhHHHHHHHHHHHHHc
Q 005583 552 ISTRNVESNTNLIISVQEEDIGSSSSIQSSKSLTLQSLQSVFDEDNPVRRRQVRFQLPSDPGMDPAVREELMDLIQAKEA 631 (690)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~eEl~~L~~A~ea 631 (690)
.++.+... ++.... ++ ...+.++++.++.++..+. +. +.++++++++.+++.+.+++++||+++|++|||+
T Consensus 650 ~~~~~~~~-~~~~~~--~~---~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~v~eEl~~L~~A~ea 720 (779)
T PLN00149 650 VGTCSTHL-EGIQLR--ED---DSDKQEPAGTSELREIRSP-PV--SRPKKRVRFVVPESPKIDRGAREELQELMEAREA 720 (779)
T ss_pred cccccccc-cccccc--cc---cccccccccccccccccCc-cc--cCcccceeeccccccccchhHHHHHHHHHHHHHc
Confidence 54322111 000000 00 0000000011111111111 11 1234678887776666678999999999999999
Q ss_pred CcEEEeeceEEEecCCCchHHHHHHHHHHHHHhhhcCCCCcccccCCCCEEEeeeEEEC
Q 005583 632 GIAYIMGHSYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPHISLIEVGMIYYV 690 (690)
Q Consensus 632 GVvYIlG~~~v~ar~~Ss~~Kr~vIn~~Y~FLRkNcR~~~~~L~IP~~~lleVGm~y~v 690 (690)
||+||+||++||||++|+|+||++|||+|+|||||||+|.++|+|||+||+||||+|||
T Consensus 721 GVvYIlG~s~v~Ar~~Ss~~KK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~v 779 (779)
T PLN00149 721 GMAYILGHSYVRAKQGSSMMKKLVINYGYDFLRRNSRGPRYALSVPHASTLEVGMVYHV 779 (779)
T ss_pred CcEEEecCceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceEEEC
Confidence 99999999999999999999999999999999999999999999999999999999997
No 4
>PLN00150 potassium ion transporter family protein; Provisional
Probab=100.00 E-value=1.3e-220 Score=1850.88 Aligned_cols=666 Identities=52% Similarity=0.960 Sum_probs=603.3
Q ss_pred CCCchhhHHHHhhhccCCccCCCCCcccccccccccCCCcCccCCchhHHHHhhcccchhhhhHHhhhhhhhhhcCcccc
Q 005583 1 MSGGTFALYSLLCRHAKFSLLPNQQAADEELSTYKYGNAVHAVGSSPFKRFLEKHKKLRTVLLVVVLFGACMVIGDGVLT 80 (690)
Q Consensus 1 GEGGtFALYSLi~R~ak~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~~~llG~~m~igDGvlT 80 (690)
|||||||||||+|||||++++|||++.|+++++|+++ +..+..++|++||||+.+|.+++++|++|+||++|||+||
T Consensus 114 GEGGtfALysLl~r~aki~l~~~~~~~~~~~s~~~~~---~~~r~~~~k~~lE~~~~~~~~l~~l~l~G~~m~~gDgviT 190 (779)
T PLN00150 114 GEGGSFALYSLLCRYCNISLLPNQHPTDVELTTYVVD---NMNRKTRIQRKLENSRVWQNVLLLIVLLGTCMVIGDGILT 190 (779)
T ss_pred CCcchhhHHHHHhhhcccccCCccccchhhhhhcccc---cchhhhHHHHhhhcchHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999753 2224467999999999999999999999999999999999
Q ss_pred ccceeeeccccceeecCCCCCceEEehhHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHhhcccCcceeeec
Q 005583 81 PAISVLSSVSGLQVTENKLTDGELLILACVILVGLFALQHFGTHKVAVMFAPIIIVWLISIFAVGLYNVIHWNPKVISAI 160 (690)
Q Consensus 81 PAiSVlSAVeGL~v~~p~~~~~~vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWF~~i~~~Giyni~~~~p~VlkAl 160 (690)
||||||||||||++..|++++++||+|||+||++||++||+||+|||++|||||++||++||++|+|||++|||+||||+
T Consensus 191 PAISVLSAVeGL~v~~p~l~~~~Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~Al 270 (779)
T PLN00150 191 PSISVLSAVVGIKAASSGLDTNLVTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAF 270 (779)
T ss_pred cchhhhhhhccccccCCCCCCCeehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhcCcceeeeecceeheecchhhhhccCCCCcccceeeehhhhhhhHHHhhcccchhhhccCCCccCCcce
Q 005583 161 SPLYIIKYFRETGKTGWISLGGLLLCITGTEAMFADLGHFTALSIRLAFTFFVYPCLVVQYMGQAAYLSKNLDKIPNSFY 240 (690)
Q Consensus 161 nP~ya~~f~~~~~~~g~~~LG~V~LciTGaEALyADlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFy 240 (690)
||+|+++||.+||++||.+||||+||+||+|||||||||||++|||+||+++|||||+|||+||||||++||++.+||||
T Consensus 271 nP~y~~~ff~~~~~~g~~~LG~V~L~iTGaEALyADlGHFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~~~~npFf 350 (779)
T PLN00150 271 NPLYIVSFFIRNGRQGWESLGGIVLCMTGTEAMFADLGHFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHMEDVNDPFY 350 (779)
T ss_pred CHHHHHHHHHhCCCceEEEecceeeeecchhhhhccccCCCccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcchHHHHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCceeEEecCCccCCceeechhhHHHHHHHhheeEEec
Q 005583 241 DSIPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTSRHIYGQIYIPEINWILMILTLAITIGFQ 320 (690)
Q Consensus 241 ~~iP~~~~~p~~vlAtlAaIIASQAlISg~FSli~Qai~Lg~fPrvki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~ 320 (690)
+++|+|++||++++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|++||++||
T Consensus 351 ~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~ 430 (779)
T PLN00150 351 RSLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFR 430 (779)
T ss_pred HhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHH
Q 005583 321 DTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIFLAGAFLLFFLAIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMY 400 (690)
Q Consensus 321 ~s~~l~~AYGlaV~~~MliTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~ 400 (690)
||++||||||+||++||++||+|+++||+.+||||++++++|+++|+++|++|||||+.||+||||+||++|++++++|+
T Consensus 431 ~s~~l~~AYGiAV~~vM~iTT~L~~~v~~~~W~~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~ 510 (779)
T PLN00150 431 DTDEIGNAYGIAVVGVMIITTCLMTLVMIIIWRKHILLALLFFTVFAIIEGIYFSAVLFKVTQGGWVPLVIAAVFGTVMY 510 (779)
T ss_pred ChHHHHHHhhhheehhhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhHHHHHhhhhccCCChHHHHhcCCCCCCccccceEEEEeCCCCCchhHHHHhhhhCcccceEEEEEEEEEeccccc
Q 005583 401 IWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYV 480 (690)
Q Consensus 401 ~W~~G~~~~~~~~~~~~~~~~~l~~l~~~~~~~rvpG~~~f~t~~~~~vP~~~~h~l~~~~~~h~~~vfv~v~~~~~P~v 480 (690)
+||||++++++++.+|++|++++.++.++.++.||||+|+|||++++|+|++|.||++|+|++||++||+|||++|+|+|
T Consensus 511 ~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~~~~gvP~~f~h~v~~~~~lhe~~Vfl~i~~~~vP~V 590 (779)
T PLN00150 511 TWHYGTRKRYLYEMQHKVSVGWLLGLGPSLGLVRVPGIGLMYTDLAHGVPPLFSHFITNLPAIHSTVVFVCIKYLPVNTV 590 (779)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHhhcccCCCcccCcEEEEEeCCCCCCCHHHHHHHHhCCcccceEEEEEEEECccccc
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEEeeecccCChhhHHHHHHHHHHHHHhhhccCCCCCCCCcccCCccceeeccccccC
Q 005583 481 SPEERFLIGRVCPRPYRMYRCIVRYGYKDVQRDDGDFENQLIQSIAEFIQMEAEEPQFSSSESSLDGRMAVISTRNVESN 560 (690)
Q Consensus 481 ~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~f~~~lv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (690)
|++|||+++++++++|++|||++||||||++++++|||++|+++|++||+.|+.+... + ++ ++++..+.++...
T Consensus 591 ~~~eR~~v~~i~~~~~r~~r~vvryGy~d~~~d~~dFE~~LvesL~~FIr~e~~~~~~----~-~~-~~~~~~~~~~~~~ 664 (779)
T PLN00150 591 PQDERFLIRRIGPRAYSMYRCAARYGYTDLEKKDDNFEQLLIASLERFIEIESFREQS----D-LE-SMAASWTPEELMG 664 (779)
T ss_pred ChhheEEEEEecCCCceEEEEEEEEccCcCcccchHHHHHHHHHHHHHHHhhhhcccc----c-cc-ccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999998753111 0 01 1111111100000
Q ss_pred ccccccccccccCCCccccccccccccccccccccCCccccccceeccCCCCCCChhHHHHHHHHHHHHHcCcEEEeece
Q 005583 561 TNLIISVQEEDIGSSSSIQSSKSLTLQSLQSVFDEDNPVRRRQVRFQLPSDPGMDPAVREELMDLIQAKEAGIAYIMGHS 640 (690)
Q Consensus 561 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~~ 640 (690)
++ ++......++.+.+..+.++.++.+.+.. +++++ ++.+++++||+++|++|||+||+||+||+
T Consensus 665 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~v~eEl~~L~~A~eaGVvYIlG~~ 729 (779)
T PLN00150 665 EG---------NSVGSGLFTQYDQSDINFATSQEWKRPSS-QEDSV-----SGHSSDTQDEVAFLNKCKEAGVVYILGNN 729 (779)
T ss_pred cC---------Ccccccccccccccccccccccccccccc-ccccc-----ccccccHHHHHHHHHHHHHcCcEEEeccc
Confidence 00 00000000000000011111112111111 12222 22357899999999999999999999999
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhhhcCCCCcccccCCCCEEEeeeEEEC
Q 005583 641 YVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPHISLIEVGMIYYV 690 (690)
Q Consensus 641 ~v~ar~~Ss~~Kr~vIn~~Y~FLRkNcR~~~~~L~IP~~~lleVGm~y~v 690 (690)
+||||++|+|+||++||++|+|||||||+|.++|+|||+||+||||+|||
T Consensus 730 ~v~Ak~~Ss~~KK~vIN~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~V 779 (779)
T PLN00150 730 DVKARKDSGFFKKVIINYIYTFLRRISRDSEVVLNIPHECLLKVGMVYYV 779 (779)
T ss_pred eEEEcCCCcHHHHHHHHHHHHHHHHhccCCccccCCChHHeEEeceEEEC
Confidence 99999999999999999999999999999999999999999999999997
No 5
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=100.00 E-value=2.7e-200 Score=1678.13 Aligned_cols=623 Identities=44% Similarity=0.816 Sum_probs=590.3
Q ss_pred CCCchhhHHHHhhhccCCccCCCCCcccccccccccCCCcCccCCchhHHHHhhcccchhhhhHHhhhhhhhhhcCcccc
Q 005583 1 MSGGTFALYSLLCRHAKFSLLPNQQAADEELSTYKYGNAVHAVGSSPFKRFLEKHKKLRTVLLVVVLFGACMVIGDGVLT 80 (690)
Q Consensus 1 GEGGtFALYSLi~R~ak~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~~~llG~~m~igDGvlT 80 (690)
|||||||||||+||++|.+.+|||++.|+++++|+.+..++..++.++|+++|++++.|++++++|++|+||++|||+||
T Consensus 65 GEGGi~AL~sL~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~~~l~G~al~~gDgviT 144 (688)
T TIGR00794 65 GEGGTFALYSLIGRYAKISARPVHQELDRAESSYSTKSPNLLNKTTSLKTKLELSKFISKFLVIFGLLGGSMVMGDGVLT 144 (688)
T ss_pred CCchHHHHHHHHHHhccccCCCcccchhhhhhhcccccccccchhhHHHHHhhhhHHHHHHHHHHHHHhHHHHhcccccc
Confidence 99999999999999999999999999999999998764444457788999999998889999999999999999999999
Q ss_pred ccceeeeccccceeecCCCCCceEEehhHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHhhcccCcceeeec
Q 005583 81 PAISVLSSVSGLQVTENKLTDGELLILACVILVGLFALQHFGTHKVAVMFAPIIIVWLISIFAVGLYNVIHWNPKVISAI 160 (690)
Q Consensus 81 PAiSVlSAVeGL~v~~p~~~~~~vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWF~~i~~~Giyni~~~~p~VlkAl 160 (690)
||||||||||||++..|++++++|++|||+||++||++||+||+|||++|||||++||++||++|+|||++|||+||||+
T Consensus 145 PAiSVLSAVeGl~v~~p~~~~~~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~Al 224 (688)
T TIGR00794 145 PAISVLSAVSGLEIVAPSLSDTWVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKAL 224 (688)
T ss_pred cchhhhhhhccccccCCCCCCCeehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHh
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhcCcceeeeecceeheecchhhhhccCCCCcccceeeehhhhhhhHHHhhcccchhhhccCCCccCCcce
Q 005583 161 SPLYIIKYFRETGKTGWISLGGLLLCITGTEAMFADLGHFTALSIRLAFTFFVYPCLVVQYMGQAAYLSKNLDKIPNSFY 240 (690)
Q Consensus 161 nP~ya~~f~~~~~~~g~~~LG~V~LciTGaEALyADlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFy 240 (690)
||+||++||.+||..||.+||+|+||+||+||||||||||||+|||+||+++|||||+|||+||||||++||++.+||||
T Consensus 225 nP~ya~~f~~~~~~~~~~~LG~V~L~iTGaEALyADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~~~~NpFf 304 (688)
T TIGR00794 225 SPYYAVQFFIEYGTVGWVSLGGVVLSITGVEAMFADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPEAIKNPFF 304 (688)
T ss_pred CHHHHHHHHHHCCCceeeeccchhheeccHhhhhcccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcchhcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcchHHHHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCceeEEecCCccCCceeechhhHHHHHHHhheeEEec
Q 005583 241 DSIPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTSRHIYGQIYIPEINWILMILTLAITIGFQ 320 (690)
Q Consensus 241 ~~iP~~~~~p~~vlAtlAaIIASQAlISg~FSli~Qai~Lg~fPrvki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~ 320 (690)
.++|+|++||++++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++||
T Consensus 305 ~~~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~ 384 (688)
T TIGR00794 305 LSIPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFR 384 (688)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHH
Q 005583 321 DTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIFLAGAFLLFFLAIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMY 400 (690)
Q Consensus 321 ~s~~l~~AYGlaV~~~MliTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~ 400 (690)
||++||+|||+||++||+|||+|++++|+.+||||++++++|+++|+.+|+.||+||+.||+||||+|+++|++++++|+
T Consensus 385 ~S~~la~AYGiaVt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~iM~ 464 (688)
T TIGR00794 385 DTNNLGAAYGIAVTGTFLVTTCLMTVVMTIVWKWNIYFVALFLLVFLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSVMT 464 (688)
T ss_pred ChHHHHHHhhhhhhhhhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhHHHHHhhhhccCCChHHHHh-cCCCCCCccccceEEEEeCCCCCchhHHHHhhhhCcccceEEEEEEEEEecccc
Q 005583 401 IWHYGTRKKYNFDLHNKVSLRWLLG-LGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPY 479 (690)
Q Consensus 401 ~W~~G~~~~~~~~~~~~~~~~~l~~-l~~~~~~~rvpG~~~f~t~~~~~vP~~~~h~l~~~~~~h~~~vfv~v~~~~~P~ 479 (690)
+|+||++++++++.+++++++++.+ +.++.+++|+||+|+|+|++++++|+++.|+++|+|++||++||+||+++|+|+
T Consensus 465 ~W~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~l~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lhe~~vfltv~~~~~P~ 544 (688)
T TIGR00794 465 TWRYGRFRKLRRDHEHRVSISALIASLQPKPGLVRVPGIGIYYSNLVNGIPAVFGHLVTKFPSIHEVFIFLSLRTLDAPT 544 (688)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHhhcCCCcccCCeEEEeeCCccCCCHHHHHHHHhCCccceEEEEEEEEECCCCc
Confidence 9999999999999999999999877 555555689999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEecCCCCcEEEEEEEEeeecccCChhhHHHHHHHHHHHHHhhhccCCCCCCCCcccCCccceeecccccc
Q 005583 480 VSPEERFLIGRVCPRPYRMYRCIVRYGYKDVQRDDGDFENQLIQSIAEFIQMEAEEPQFSSSESSLDGRMAVISTRNVES 559 (690)
Q Consensus 480 v~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~f~~~lv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (690)
||++|||+++++++++ |+|||++||||||+++.+++|+++++++|.+|++.+..+ +..
T Consensus 545 Vp~~eR~~v~~l~~~~-g~~rv~~~yGf~e~~~~~~~l~~~ii~~L~~fi~~~~~~-----~~~---------------- 602 (688)
T TIGR00794 545 VHNEERVQISQVGPTE-GMYRCVIRYGFMDTPNEPKELAAHIVNSIVEFVEHECGF-----NLN---------------- 602 (688)
T ss_pred CCcceEEEEEEEcCCC-CEEEEEEEecCCcCCCcHHHHHHHHHHHHHHHHHHHhhh-----ccc----------------
Confidence 9999999999999865 899999999999999999999999999999999876421 000
Q ss_pred CccccccccccccCCCccccccccccccccccccccCCccccccceeccCCCCCCChhHHHHHHHHHHHHHcCcEEEeec
Q 005583 560 NTNLIISVQEEDIGSSSSIQSSKSLTLQSLQSVFDEDNPVRRRQVRFQLPSDPGMDPAVREELMDLIQAKEAGIAYIMGH 639 (690)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~ 639 (690)
+. + .. + ++ + .+...+||++++++|+|+||+|++||
T Consensus 603 ---------~~--~---~~-----------~---~~---------------~--~~~~~eee~~~~~~~~~~gv~yflg~ 637 (688)
T TIGR00794 603 ---------NL--E---EL-----------S---DK---------------R--CRMPIEEIFENAMETKEHGYSYFMGE 637 (688)
T ss_pred ---------cc--c---cc-----------c---cc---------------c--cccchHHHHHHHHHHhhcCCEEEeec
Confidence 00 0 00 0 00 0 00125789999999999999999999
Q ss_pred eEEEecCCCchHHHHHHHHHHHHHhhhcCCCCcccccCCCCEEEeeeEEEC
Q 005583 640 SYVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPHISLIEVGMIYYV 690 (690)
Q Consensus 640 ~~v~ar~~Ss~~Kr~vIn~~Y~FLRkNcR~~~~~L~IP~~~lleVGm~y~v 690 (690)
++++++++|+++||..||++|.|||||||++...++|||+|++||||.||+
T Consensus 638 ~~~~~~~~~~~~~~~~I~~lf~~l~rn~~~~~~~~~iP~~rvvevG~~~~i 688 (688)
T TIGR00794 638 ESLILKKRSPILRKIRVNHVFLFIRRNARRAPKVLEIPPDRLLEVGTVVEI 688 (688)
T ss_pred eEEEECCCccHHHHHHHHHHHHHHHHhccChhhheeCChhhEEEEeeEEEC
Confidence 999999999999999999999999999999999999999999999999986
No 6
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=100.00 E-value=2.7e-175 Score=1456.08 Aligned_cols=541 Identities=30% Similarity=0.563 Sum_probs=507.3
Q ss_pred CCCchhhHHHHhhhccCCccCCCCCcccccccccccCCCcCccCCchhHHHHhhcccchhhhhHHhhhhhhhhhcCcccc
Q 005583 1 MSGGTFALYSLLCRHAKFSLLPNQQAADEELSTYKYGNAVHAVGSSPFKRFLEKHKKLRTVLLVVVLFGACMVIGDGVLT 80 (690)
Q Consensus 1 GEGGtFALYSLi~R~ak~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~~~llG~~m~igDGvlT 80 (690)
|||||||||||+||+.| ++.|.+++++|++|+||++|||+||
T Consensus 79 GEGGi~AL~aL~~~~~~--------------------------------------~~~~~~l~~lgl~Gaal~~gDgvIT 120 (622)
T PRK10745 79 GEGGILTLMSLAGRNTS--------------------------------------ARTTSMLVIMGLIGGSFFYGEVVIT 120 (622)
T ss_pred CCchHHHHHHHHhhhcc--------------------------------------cchhHHHHHHHHHHHHHHhhccccc
Confidence 99999999999988532 1224468899999999999999999
Q ss_pred ccceeeeccccceeecCCCCCceEEehhHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHhhcccCcceeeec
Q 005583 81 PAISVLSSVSGLQVTENKLTDGELLILACVILVGLFALQHFGTHKVAVMFAPIIIVWLISIFAVGLYNVIHWNPKVISAI 160 (690)
Q Consensus 81 PAiSVlSAVeGL~v~~p~~~~~~vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWF~~i~~~Giyni~~~~p~VlkAl 160 (690)
||||||||||||++..|++++ +|+||||+||++||++||+||+|||++|||||++||++||++|+|||.+ ||+||||+
T Consensus 121 PAISVLSAVEGL~v~~p~l~~-~Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~Gi~~I~~-~P~Vl~Al 198 (622)
T PRK10745 121 PAISVMSAIEGLEIVAPQLDT-YIVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLGLRSIIA-NPEVLHAL 198 (622)
T ss_pred hhHHHHHHhhcccccCCCCCC-ccHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHhc-CHHHHhHh
Confidence 999999999999999999965 8999999999999999999999999999999999999999999999998 99999999
Q ss_pred ChHHHHHHHhhcCcceeeeecceeheecchhhhhccCCCCcccceeeehhhhhhhHHHhhcccchhhhccCCCccCCcce
Q 005583 161 SPLYIIKYFRETGKTGWISLGGLLLCITGTEAMFADLGHFTALSIRLAFTFFVYPCLVVQYMGQAAYLSKNLDKIPNSFY 240 (690)
Q Consensus 161 nP~ya~~f~~~~~~~g~~~LG~V~LciTGaEALyADlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFy 240 (690)
||+|+++||.+||..||.+||+|+||+|||||||||||||||+|||+||+++|||||+|||+||||||++||++.+||||
T Consensus 199 nP~ya~~f~~~~~~~gf~~LG~V~L~vTGaEALYADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~~~~NpFf 278 (622)
T PRK10745 199 NPMWAVHFFLEYKTVSFFALGAVVLAITGVEALYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPFF 278 (622)
T ss_pred CHHHHHHHHHhCCCceEEEecceeeeccchHHHhhccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCchhhcCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcchHHHHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCceeEEecCCccCCceeechhhHHHHHHHhheeEEec
Q 005583 241 DSIPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTSRHIYGQIYIPEINWILMILTLAITIGFQ 320 (690)
Q Consensus 241 ~~iP~~~~~p~~vlAtlAaIIASQAlISg~FSli~Qai~Lg~fPrvki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~ 320 (690)
.++|+|++||++++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++||
T Consensus 279 ~~~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~ 358 (622)
T PRK10745 279 LLAPDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFE 358 (622)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHH
Q 005583 321 DTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIFLAGAFLLFFLAIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMY 400 (690)
Q Consensus 321 ~s~~l~~AYGlaV~~~MliTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~ 400 (690)
+|++||+|||+||++||++||+|++++++.+|+|+++++++++++|+.+|+.||+||+.||+||||+|+++|++++++|+
T Consensus 359 sS~~La~AYGiAVt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~v~~~iM~ 438 (622)
T PRK10745 359 HSSNLAAAYGIAVTGTMVLTSILSTTVARKNWHWNKYFVALILIAFLCIDIPLFSANLDKLLSGGWLPLSLGLVMFIVMT 438 (622)
T ss_pred CchHHHHHhhhhheeHhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhHHHHHhhhhccCCChHHHHhcCCCCCCccccceEEEEeCCCCCchhHHHHhhhhCcccceEEEEEEEEEeccccc
Q 005583 401 IWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYV 480 (690)
Q Consensus 401 ~W~~G~~~~~~~~~~~~~~~~~l~~l~~~~~~~rvpG~~~f~t~~~~~vP~~~~h~l~~~~~~h~~~vfv~v~~~~~P~v 480 (690)
+|++|++++++++.+++++++++.+..++.++.||||+|+|+|+..+++|+.+.|+++||+++||++||+||+++|+|+|
T Consensus 439 tW~~G~~~~~~~~~~~~~~l~~f~~~l~~~~~~rvpG~avflt~~~~~vP~~l~h~lk~~~~lhe~~v~l~v~~~~~P~V 518 (622)
T PRK10745 439 TWKSERFRLLRRMHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALLHNLKHNKVLHERVILLTLRTEDAPYV 518 (622)
T ss_pred HHHHhHHHHHHHHHhcCCCHHHHHHHhhhcCCCccCeEEEEEeCCCCCCCHHHHHHhhcCCccceEEEEEEEEECCCccc
Confidence 99999999999999999999999877776677799999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEEeeecccCChhhHHHHHHHHHHHHHhhhccCCCCCCCCcccCCccceeeccccccC
Q 005583 481 SPEERFLIGRVCPRPYRMYRCIVRYGYKDVQRDDGDFENQLIQSIAEFIQMEAEEPQFSSSESSLDGRMAVISTRNVESN 560 (690)
Q Consensus 481 ~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~f~~~lv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (690)
+++|||+++++++ ++|||++||||||+++.++.+ +.. +.+..
T Consensus 519 ~~~eR~~v~~l~~---g~~rv~~~yGf~e~~~i~~~L-----~~~----~~~g~-------------------------- 560 (622)
T PRK10745 519 HNVRRVQIEQLSP---TFWRVVASYGWRETPNVEEVF-----HRC----GLEGL-------------------------- 560 (622)
T ss_pred CcccEEEEEEECC---CEEEEEEEecCCCCCCHHHHH-----HHH----HhCCC--------------------------
Confidence 9999999999996 699999999999987653322 111 00000
Q ss_pred ccccccccccccCCCccccccccccccccccccccCCccccccceeccCCCCCCChhHHHHHHHHHHHHHcCcEEEeece
Q 005583 561 TNLIISVQEEDIGSSSSIQSSKSLTLQSLQSVFDEDNPVRRRQVRFQLPSDPGMDPAVREELMDLIQAKEAGIAYIMGHS 640 (690)
Q Consensus 561 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~~ 640 (690)
+. + -..++|.+||+
T Consensus 561 --------~~------------------------------------~----------------------~~~~s~fl~r~ 574 (622)
T PRK10745 561 --------SC------------------------------------R----------------------MMETSFFMSHE 574 (622)
T ss_pred --------CC------------------------------------C----------------------ccceEEEEeeE
Confidence 00 0 01578999999
Q ss_pred EEEecCCCc---hHHHHHHHHHHHHHhhhcCCCCcccccCCCCEEEeeeEEEC
Q 005583 641 YVKARRSSS---FVKRFMIDILYSFLRKNCRGPSVALNIPHISLIEVGMIYYV 690 (690)
Q Consensus 641 ~v~ar~~Ss---~~Kr~vIn~~Y~FLRkNcR~~~~~L~IP~~~lleVGm~y~v 690 (690)
.+...++++ |-|| +|.||.||+++....+++|++|++|+|+-+|+
T Consensus 575 ~l~~~~~~~m~~wr~~-----lF~~m~rna~~~~~~f~lP~~rvvelG~~v~i 622 (622)
T PRK10745 575 SLILGKRPWYLRLRGK-----LFLLLQRNALRAPDQFEIPPNRVIELGTQVEI 622 (622)
T ss_pred EEEeCCCCCcHHHHHH-----HHHHHHHcCCCHHHHhCCCcccEEEEeeEEeC
Confidence 999888877 5555 68999999999999999999999999999885
No 7
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2.5e-168 Score=1389.94 Aligned_cols=469 Identities=43% Similarity=0.845 Sum_probs=459.9
Q ss_pred CCCchhhHHHHhhhccCCccCCCCCcccccccccccCCCcCccCCchhHHHHhhcccchhhhhHHhhhhhhhhhcCcccc
Q 005583 1 MSGGTFALYSLLCRHAKFSLLPNQQAADEELSTYKYGNAVHAVGSSPFKRFLEKHKKLRTVLLVVVLFGACMVIGDGVLT 80 (690)
Q Consensus 1 GEGGtFALYSLi~R~ak~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~~~llG~~m~igDGvlT 80 (690)
|||||||||||+|| ..|++++.|.+++++|++|+||++|||+||
T Consensus 66 GEGGi~aL~sL~~~------------------------------------~~~~~~~~~~~l~~l~l~G~al~~gDgviT 109 (534)
T PF02705_consen 66 GEGGIFALYSLIRR------------------------------------FLKSSKRRRWLLLILGLLGAALFYGDGVIT 109 (534)
T ss_pred CChhHHHHHHHHHH------------------------------------hhccchhHHHHHHHHHHHHhhhhhcceeec
Confidence 99999999999995 234456667778999999999999999999
Q ss_pred ccceeeeccccceeecCCCCCceEEehhHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHhhcccCcceeeec
Q 005583 81 PAISVLSSVSGLQVTENKLTDGELLILACVILVGLFALQHFGTHKVAVMFAPIIIVWLISIFAVGLYNVIHWNPKVISAI 160 (690)
Q Consensus 81 PAiSVlSAVeGL~v~~p~~~~~~vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWF~~i~~~Giyni~~~~p~VlkAl 160 (690)
||||||||||||++..|+++ ++|++|||+||++||++||+||+|||++|||||++||++||++|+|||.+ ||+||+|+
T Consensus 110 PAISVlSAvEGl~v~~p~~~-~~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~~G~~~I~~-~p~Vl~A~ 187 (534)
T PF02705_consen 110 PAISVLSAVEGLEVATPSLE-PYVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGVLGLYNIIQ-HPEVLKAL 187 (534)
T ss_pred chHHHHHHhhhhhccCCCCc-ceehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhh-CHHHHHHh
Confidence 99999999999999999998 59999999999999999999999999999999999999999999999999 69999999
Q ss_pred ChHHHHHHHhhcCcceeeeecceeheecchhhhhccCCCCcccceeeehhhhhhhHHHhhcccchhhhccCCCccCCcce
Q 005583 161 SPLYIIKYFRETGKTGWISLGGLLLCITGTEAMFADLGHFTALSIRLAFTFFVYPCLVVQYMGQAAYLSKNLDKIPNSFY 240 (690)
Q Consensus 161 nP~ya~~f~~~~~~~g~~~LG~V~LciTGaEALyADlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFy 240 (690)
||+|+++||.+||+.||.+||+|+||+||+||||||||||||+|||+||+++|||||+|||+||||||++||++.+||||
T Consensus 188 nP~yai~f~~~~~~~~~~~LG~V~L~~TGaEALyADmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~~~npFf 267 (534)
T PF02705_consen 188 NPYYAIRFFIRNGWIGFFVLGAVFLCVTGAEALYADMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEAVSNPFF 267 (534)
T ss_pred CHHHHHHHHHHcCCchhhhcchHHHHHhhHHHHHhhhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcchHHHHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCceeEEecCCccCCceeechhhHHHHHHHhheeEEec
Q 005583 241 DSIPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTSRHIYGQIYIPEINWILMILTLAITIGFQ 320 (690)
Q Consensus 241 ~~iP~~~~~p~~vlAtlAaIIASQAlISg~FSli~Qai~Lg~fPrvki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~ 320 (690)
.++|+|++||++++||+||||||||+|||+||+++||++||||||+||+|||++.+||||||+|||+||++|++++++||
T Consensus 268 ~~~P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~ 347 (534)
T PF02705_consen 268 LLIPEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFR 347 (534)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHH
Q 005583 321 DTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIFLAGAFLLFFLAIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMY 400 (690)
Q Consensus 321 ~s~~l~~AYGlaV~~~MliTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~ 400 (690)
||++||+|||+||++||++||+|++++++.+||||++++++++++|+.+|+.||+||+.||+||||+|+++|++++++|+
T Consensus 348 ~S~~la~AYGiAVt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~fl~id~~ff~anl~K~~~GGW~pl~ia~~l~~iM~ 427 (534)
T PF02705_consen 348 SSSNLAAAYGIAVTGTMLITTILLFLVMRRVWKWPLWLALLFFLFFLVIDLLFFSANLLKFPHGGWFPLLIAAVLFTIMY 427 (534)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhHHHHHhhhhccCCChHHHHhcCCCCCCccccceEEEEeCCCCCchhHHHHhhhhCcccceEEEEEEEEEeccccc
Q 005583 401 IWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYV 480 (690)
Q Consensus 401 ~W~~G~~~~~~~~~~~~~~~~~l~~l~~~~~~~rvpG~~~f~t~~~~~vP~~~~h~l~~~~~~h~~~vfv~v~~~~~P~v 480 (690)
+|++|++++++++++++++++++.++.++.++.|+||+|+|+|+..+++|+.+.|+++||+++||+++|++++++|+|+|
T Consensus 428 tW~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvpG~aVFlt~~~~~vP~~l~h~l~~~~vlhe~~v~l~v~~~~vP~V 507 (534)
T PF02705_consen 428 TWRRGRKLLYEFERENKLPLDDFLELLEDQSIPRVPGTAVFLTRSPDGVPPALLHNLKHNKVLHERVVFLTVKTEPVPRV 507 (534)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHhhhhCCCceecceEEEEcCCCccCcHHHHHHHHhCCcccceEEEEEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEEeeec
Q 005583 481 SPEERFLIGRVCPRPYRMYRCIVRYGYKD 509 (690)
Q Consensus 481 ~~~eR~~v~~~~~~~~~~~r~~~ryGy~d 509 (690)
|++|||++++++++ ++|||++||||||
T Consensus 508 ~~~~R~~v~~l~~~--g~~rv~~ryGf~e 534 (534)
T PF02705_consen 508 PPEERYEVERLGPD--GFYRVTLRYGFME 534 (534)
T ss_pred CCceEEEEEEecCC--CEEEEEEEecCCC
Confidence 99999999999973 7999999999998
No 8
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-160 Score=1303.77 Aligned_cols=542 Identities=31% Similarity=0.631 Sum_probs=508.6
Q ss_pred CCCchhhHHHHhhhccCCccCCCCCcccccccccccCCCcCccCCchhHHHHhhcccchhhhhHHhhhhhhhhhcCcccc
Q 005583 1 MSGGTFALYSLLCRHAKFSLLPNQQAADEELSTYKYGNAVHAVGSSPFKRFLEKHKKLRTVLLVVVLFGACMVIGDGVLT 80 (690)
Q Consensus 1 GEGGtFALYSLi~R~ak~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~~~llG~~m~igDGvlT 80 (690)
|||||++|.+|.+|.++ +...++.++|++|+|+++|||+||
T Consensus 85 GEGGilsL~aL~~~~~~---------------------------------------~~~~~l~~~g~iGaalf~GD~vIT 125 (627)
T COG3158 85 GEGGILSLMALARRAAP---------------------------------------RRTALLIILGLIGAALFYGDAVIT 125 (627)
T ss_pred CCchhhhHHHHHHhhcC---------------------------------------CCchhhhhHHHHhHHHHhcccccc
Confidence 89999999999999554 122358999999999999999999
Q ss_pred ccceeeeccccceeecCCCCCceEEehhHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHhhcccCcceeeec
Q 005583 81 PAISVLSSVSGLQVTENKLTDGELLILACVILVGLFALQHFGTHKVAVMFAPIIIVWLISIFAVGLYNVIHWNPKVISAI 160 (690)
Q Consensus 81 PAiSVlSAVeGL~v~~p~~~~~~vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWF~~i~~~Giyni~~~~p~VlkAl 160 (690)
||||||||||||+++.|.+++ +|+|||++||++||++||+||++||++|||||++||+++|+.|++||.+ ||+||+|+
T Consensus 126 PAiSVlSAvEGL~iv~p~~~~-~Vvpitl~IL~~LF~iQ~~GT~~Vg~~FGPVm~lWF~~l~~~Gl~~i~~-~p~IL~Ai 203 (627)
T COG3158 126 PAISVLSAVEGLEIVTPALDP-YVVPITLIILVLLFLIQRFGTGRVGKLFGPVMLLWFLALAVLGLINIID-DPEILRAI 203 (627)
T ss_pred hhHHHHHHhccccccCccccC-ccHHHHHHHHHHHHHHhcccchhhhhhhccHHHHHHHHHHHHHHHHHhc-CHHHHHHh
Confidence 999999999999999999985 9999999999999999999999999999999999999999999999999 99999999
Q ss_pred ChHHHHHHHhhcCcceeeeecceeheecchhhhhccCCCCcccceeeehhhhhhhHHHhhcccchhhhccCCCccCCcce
Q 005583 161 SPLYIIKYFRETGKTGWISLGGLLLCITGTEAMFADLGHFTALSIRLAFTFFVYPCLVVQYMGQAAYLSKNLDKIPNSFY 240 (690)
Q Consensus 161 nP~ya~~f~~~~~~~g~~~LG~V~LciTGaEALyADlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~A~ll~~p~~~~npFy 240 (690)
|||||++|+.++|..||++||+||||+||+||||||||||||+|||.||+++|+|||+|||+|||||+++||++..||||
T Consensus 204 NP~yAi~fl~~~~~~gf~vLGaVfLavTGaEALYADmGHfGr~pI~~AWf~vv~P~L~LNY~GQGA~vL~~p~a~~npFF 283 (627)
T COG3158 204 NPYYAVHFLLEEGFVGFFVLGAVFLAVTGAEALYADMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPFF 283 (627)
T ss_pred ChHHHHHHHHhCCceEEEEeeeeeeeeccHHHHHhhccccCCccHHHHHHHHHHHHHHHHHccccceeccCcccccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcchHHHHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCceeEEecCCccCCceeechhhHHHHHHHhheeEEec
Q 005583 241 DSIPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTSRHIYGQIYIPEINWILMILTLAITIGFQ 320 (690)
Q Consensus 241 ~~iP~~~~~p~~vlAtlAaIIASQAlISg~FSli~Qai~Lg~fPrvki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~ 320 (690)
.++|+|++||++++||+||||||||+|||+||+++||++||++||+||.|||++..||||||.|||+|++++++++++||
T Consensus 284 ~~~P~~aliP~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~ 363 (627)
T COG3158 284 LLAPDWALIPLVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFG 363 (627)
T ss_pred HhChhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHH
Q 005583 321 DTTLIGNAYGLACMTVMFITTFLMALIIIFVWYKSIFLAGAFLLFFLAIEGVYLSAAFIKVPQGGWVPLVLSSVFMVVMY 400 (690)
Q Consensus 321 ~s~~l~~AYGlaV~~~MliTT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~K~~~GGW~pl~ia~~~~~iM~ 400 (690)
+|++||+|||+|||+||+|||+|++.+++..|||+++++.++.++|+++|..||+||+.|++||||+|+++|++++++|+
T Consensus 364 ~S~~LAaAYGiAVTgtM~iTt~L~~~~~~~~w~w~~~~~~~~~~~f~~id~~Ff~AN~~Ki~~GGw~pllia~~i~~vM~ 443 (627)
T COG3158 364 SSSNLAAAYGIAVTGTMVITTILLTVVMRKKWKWRKWLVALILIVFLAIDILFFAANLLKIHDGGWLPLLLAAVIFFVMW 443 (627)
T ss_pred ChHHHHHhhChheeehhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhHHHHHhhhhccCCChHHHHhcCCCCCCccccceEEEEeCCCCCchhHHHHhhhhCcccceEEEEEEEEEeccccc
Q 005583 401 IWHYGTRKKYNFDLHNKVSLRWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPAFHKVLVFVCVKSVPVPYV 480 (690)
Q Consensus 401 ~W~~G~~~~~~~~~~~~~~~~~l~~l~~~~~~~rvpG~~~f~t~~~~~vP~~~~h~l~~~~~~h~~~vfv~v~~~~~P~v 480 (690)
||++|+++.+++..++.++++.+.+..++..+.||||+++|+|+..+.+|.++.|+++||+++||.+||++|++.|+|||
T Consensus 444 tW~~g~~~l~~~~~~~~i~l~~fi~~l~~~~p~~v~gTAVfLt~~~~~vP~aLlhnlkhnkvlhe~nv~ltv~t~~~P~v 523 (627)
T COG3158 444 TWKRGRQILFEKTRENGIPLDAFIASLEKHPPVRVPGTAVFLTRDPDVVPRALLHNLKHNKVLHERNVFLTVRTEDVPYV 523 (627)
T ss_pred HhhhhhHHHHHHhhcCCCCHHHHHHHHhhCCCcccCceEEEEcCCCCcCcHHHHHHhhhhheeeeeEEEEEEEecCCCCC
Confidence 99999999999999999999998888888889999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEEeeecccCChhhHHHHHHHHHHHHHhhhccCCCCCCCCcccCCccceeeccccccC
Q 005583 481 SPEERFLIGRVCPRPYRMYRCIVRYGYKDVQRDDGDFENQLIQSIAEFIQMEAEEPQFSSSESSLDGRMAVISTRNVESN 560 (690)
Q Consensus 481 ~~~eR~~v~~~~~~~~~~~r~~~ryGy~d~~~~~~~f~~~lv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (690)
+++||++++++++ +++|++++|||||+|+..+.+ .. ++.+
T Consensus 524 ~~~~r~~ve~l~~---~f~rV~l~~Gfme~pnvp~~l-----~~----~~~~---------------------------- 563 (627)
T COG3158 524 HPTDRVKVEQLSD---DFVRVVLHFGFMETPNVPRAL-----RL----CRKK---------------------------- 563 (627)
T ss_pred CccceeeeeeccC---ceEEEEEEeeccCCCCHHHHH-----HH----Hhhc----------------------------
Confidence 9999999999998 599999999999998764333 11 1100
Q ss_pred ccccccccccccCCCccccccccccccccccccccCCccccccceeccCCCCCCChhHHHHHHHHHHHHHcCcEEEeece
Q 005583 561 TNLIISVQEEDIGSSSSIQSSKSLTLQSLQSVFDEDNPVRRRQVRFQLPSDPGMDPAVREELMDLIQAKEAGIAYIMGHS 640 (690)
Q Consensus 561 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~~ 640 (690)
+ -+|++. ...|.+|++
T Consensus 564 -G-----------------------------------------~~f~im----------------------~tsFfl~re 579 (627)
T COG3158 564 -G-----------------------------------------LKFDIM----------------------ETSFFLSRE 579 (627)
T ss_pred -C-----------------------------------------ceeccc----------------------ceEEEEEee
Confidence 0 000000 246899999
Q ss_pred EEEecCCCchHHHHHHHHHHHHHhhhcCCCCcccccCCCCEEEeeeEEE
Q 005583 641 YVKARRSSSFVKRFMIDILYSFLRKNCRGPSVALNIPHISLIEVGMIYY 689 (690)
Q Consensus 641 ~v~ar~~Ss~~Kr~vIn~~Y~FLRkNcR~~~~~L~IP~~~lleVGm~y~ 689 (690)
.+++++.+++-+-- +-.|.+|.||.-++...++||.+|++|+|---|
T Consensus 580 ~l~~~~~~g~~~w~--~~lfi~l~r~aa~~~~~F~lp~~rvvElGtqve 626 (627)
T COG3158 580 SLIASKNSGMPRWR--DRLFIALARNAASPTDYFKLPPNRVVELGTQVE 626 (627)
T ss_pred eeecCCCCCchHHH--HHHHHHHHHhcCCHHHhhCCCCCcEEEeeeeee
Confidence 99999999986532 357999999999999999999999999995443
No 9
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=90.01 E-value=0.63 Score=52.80 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=43.2
Q ss_pred EehhHHHHHHHHhhhcccchhhhhh---hhhHHHHHHHHHHHHHHHhhcccCcceeeecChHHHHHHHhhcCcceee-ee
Q 005583 105 LILACVILVGLFALQHFGTHKVAVM---FAPIIIVWLISIFAVGLYNVIHWNPKVISAISPLYIIKYFRETGKTGWI-SL 180 (690)
Q Consensus 105 v~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~vWF~~i~~~Giyni~~~~p~VlkAlnP~ya~~f~~~~~~~g~~-~L 180 (690)
..++++++++++.+.-+|.+..+++ +.-+.++=++.+.+.|++.+.+.++. ..+|...+.-.. ++..+|. .+
T Consensus 166 ~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~---~~~~~~~f~~~~-~~~~~~~~a~ 241 (501)
T TIGR00911 166 RLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVE---SLNPKNAFEGTE-TSAGGIVLAF 241 (501)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---ccCcccccCCCC-CcHHHHHHHH
Confidence 4577778888889999997666543 33222222233444555554331211 112221110000 1223343 45
Q ss_pred cceeheecchhhhh
Q 005583 181 GGLLLCITGTEAMF 194 (690)
Q Consensus 181 G~V~LciTGaEALy 194 (690)
..++.+.+|-|+.=
T Consensus 242 ~~~~~af~G~e~~~ 255 (501)
T TIGR00911 242 YSGIWAYGGWNYLN 255 (501)
T ss_pred HHHHHHHHhHHHHh
Confidence 66778888888643
No 10
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=74.69 E-value=52 Score=36.80 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=17.6
Q ss_pred hhHHHHHHHHhhhcccchhhhhh
Q 005583 107 LACVILVGLFALQHFGTHKVAVM 129 (690)
Q Consensus 107 is~~ILv~LF~iQ~~GT~kvg~~ 129 (690)
++++++.++..+.-+|+...+++
T Consensus 124 ~~~~i~~~~~~ln~~gvk~~~~i 146 (435)
T PRK10435 124 ACIAIVWVFTFVNMLGGTWVSRL 146 (435)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566677888999999887765
No 11
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=74.09 E-value=14 Score=41.77 Aligned_cols=25 Identities=8% Similarity=-0.063 Sum_probs=18.2
Q ss_pred EehhHHHHHHHHhhhcccchhhhhh
Q 005583 105 LILACVILVGLFALQHFGTHKVAVM 129 (690)
Q Consensus 105 v~is~~ILv~LF~iQ~~GT~kvg~~ 129 (690)
..+.+++++++..+.-+|.+..++.
T Consensus 144 ~~i~~~~~~~~~~in~~g~k~~~~~ 168 (482)
T TIGR00907 144 FGIMIGIHLIHALINSLPTKWLPRI 168 (482)
T ss_pred hhhHHHHHHHHHHHHHhhHhHHHHH
Confidence 4567777888888899997655444
No 12
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=73.90 E-value=20 Score=39.39 Aligned_cols=176 Identities=15% Similarity=0.119 Sum_probs=96.4
Q ss_pred eEEehhHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHHHHHhhcccCcceeeecChHHHHHHHhhcCc---ceeee
Q 005583 103 ELLILACVILVGLFALQHFGTHKVAVMFAPIIIVWLISIFAVGLYNVIHWNPKVISAISPLYIIKYFRETGK---TGWIS 179 (690)
Q Consensus 103 ~vv~is~~ILv~LF~iQ~~GT~kvg~~FgPIm~vWF~~i~~~Giyni~~~~p~VlkAlnP~ya~~f~~~~~~---~g~~~ 179 (690)
....+..+++++++.++-+|....++...-..++=++.+..+++..+..++......+++... ++. .-...
T Consensus 133 ~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 206 (466)
T COG0531 133 LIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNP------GGGSFGGILAA 206 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCccc------ccchHHHHHHH
Confidence 356788999999999999999988887666655555555555555555533332222221111 110 12334
Q ss_pred ecceeheecchhhh--hc-cCCCCcccceeeehhhhhhhHHHhhcccchhhhccCCC-ccC-----Ccce---eecC-Cc
Q 005583 180 LGGLLLCITGTEAM--FA-DLGHFTALSIRLAFTFFVYPCLVVQYMGQAAYLSKNLD-KIP-----NSFY---DSIP-EP 246 (690)
Q Consensus 180 LG~V~LciTGaEAL--yA-DlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~A~ll~~p~-~~~-----npFy---~~iP-~~ 246 (690)
++.++.+.+|-|+. +| ++=+ .+|+|-.+-..-..-+.++-.+++-+....-|. +.. +|+. .... .+
T Consensus 207 ~~~~~~~f~G~e~~~~~a~E~kn-p~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~ 285 (466)
T COG0531 207 ILLAFFAFTGFEAIATLAEEVKN-PKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNW 285 (466)
T ss_pred HHHHHHHhhcHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccH
Confidence 55668888998864 33 2223 445555554443333333333333333332221 111 3433 2222 35
Q ss_pred chHHHHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCc
Q 005583 247 VFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPR 285 (690)
Q Consensus 247 ~~~p~~vlAtlAaIIASQAlISg~FSli~Qai~Lg~fPr 285 (690)
..+-+.+++.++..-+..+.+.+.--+..+.-+-|++|+
T Consensus 286 ~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~ 324 (466)
T COG0531 286 GAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPK 324 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 555555555555555556666666666667777899998
No 13
>TIGR00909 2A0306 amino acid transporter.
Probab=73.30 E-value=15 Score=40.63 Aligned_cols=168 Identities=15% Similarity=0.077 Sum_probs=78.0
Q ss_pred ehhHHHHHHHHhhhcccchhhh---hhhhhHHHHHHHHHHHHHHHhhcccCcceeeecChHHHHHHHhhcCccee-eeec
Q 005583 106 ILACVILVGLFALQHFGTHKVA---VMFAPIIIVWLISIFAVGLYNVIHWNPKVISAISPLYIIKYFRETGKTGW-ISLG 181 (690)
Q Consensus 106 ~is~~ILv~LF~iQ~~GT~kvg---~~FgPIm~vWF~~i~~~Giyni~~~~p~VlkAlnP~ya~~f~~~~~~~g~-~~LG 181 (690)
.++++++++...+.-+|.+..+ ..++.+.++=++.+.+.|+.+. ++.-+..+.|. +..+| ..+.
T Consensus 135 ~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~~ 202 (429)
T TIGR00909 135 LPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHF---ASNNYTPFMPM---------GFGGVGAATA 202 (429)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhC---cHHhcCCCCCC---------cHHHHHHHHH
Confidence 4567777888888998976555 5566655554444444555432 22222222221 11121 1133
Q ss_pred ceeheecchhhhhc--cCCCCcccceeeehhhhhhhHHHhhcccchhhhccC-C----CccCCcce----eecCCcchHH
Q 005583 182 GLLLCITGTEAMFA--DLGHFTALSIRLAFTFFVYPCLVVQYMGQAAYLSKN-L----DKIPNSFY----DSIPEPVFWP 250 (690)
Q Consensus 182 ~V~LciTGaEALyA--DlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~A~ll~~-p----~~~~npFy----~~iP~~~~~p 250 (690)
..+.+.+|-|+.-. +-=+-.+|++..+-..-+.-+. +.|+.-....... | .+..+|+. +...++.-+-
T Consensus 203 ~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~-v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (429)
T TIGR00909 203 LVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVT-LLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLI 281 (429)
T ss_pred HHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHH-HHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHH
Confidence 45566677776543 3334455677665543222222 2244332222211 1 11223432 2222333333
Q ss_pred HHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCce
Q 005583 251 VFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRV 286 (690)
Q Consensus 251 ~~vlAtlAaIIASQAlISg~FSli~Qai~Lg~fPrv 286 (690)
+.+.+.++..-+..+.+.+.==+....-+.|.+|+.
T Consensus 282 ~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~ 317 (429)
T TIGR00909 282 LTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGS 317 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 444444444444444443333344445578999973
No 14
>PRK15049 L-asparagine permease; Provisional
Probab=71.84 E-value=31 Score=39.63 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=16.6
Q ss_pred hhHHHHHHHHhhhcccchhhhh
Q 005583 107 LACVILVGLFALQHFGTHKVAV 128 (690)
Q Consensus 107 is~~ILv~LF~iQ~~GT~kvg~ 128 (690)
+..++++++..+.-+|....+.
T Consensus 147 ~~~~~~~l~~~iN~~gvk~~~~ 168 (499)
T PRK15049 147 FALAALTIVGTMNMIGVKWFAE 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888888776664
No 15
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=71.22 E-value=46 Score=37.60 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=13.3
Q ss_pred cchHHHHHHHHHHHHHHHh
Q 005583 385 GWVPLVLSSVFMVVMYIWH 403 (690)
Q Consensus 385 GW~pl~ia~~~~~iM~~W~ 403 (690)
-|.+++++.+++....-|.
T Consensus 434 ny~~~~~~~~~~~~~~~~~ 452 (474)
T TIGR03813 434 RYVGLLIGLAALFVTAPFL 452 (474)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3788888887776655555
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=67.22 E-value=73 Score=35.47 Aligned_cols=43 Identities=9% Similarity=0.036 Sum_probs=25.5
Q ss_pred ehhHHHHHHHHhhhcccchhhhhh---hhhHHHHHHHHHHHHHHHh
Q 005583 106 ILACVILVGLFALQHFGTHKVAVM---FAPIIIVWLISIFAVGLYN 148 (690)
Q Consensus 106 ~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~vWF~~i~~~Giyn 148 (690)
.+++++++++..+.-+|++..+++ ..-.+++-++.+.+.|++.
T Consensus 125 ~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~ 170 (438)
T PRK10655 125 LATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFW 170 (438)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777888999998776654 2233333344444555443
No 17
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=66.17 E-value=19 Score=39.55 Aligned_cols=222 Identities=15% Similarity=0.184 Sum_probs=118.3
Q ss_pred EEehhHHHHHHHHhhhcccchhhhhh---hhhHHH-HHHHHHHHHHHHhhcccCcce-----eeecChHHHHHHHhhcCc
Q 005583 104 LLILACVILVGLFALQHFGTHKVAVM---FAPIII-VWLISIFAVGLYNVIHWNPKV-----ISAISPLYIIKYFRETGK 174 (690)
Q Consensus 104 vv~is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~-vWF~~i~~~Giyni~~~~p~V-----lkAlnP~ya~~f~~~~~~ 174 (690)
...++++++++.+.+.-+|....+++ .+=+.+ +-++.+.+.|++...+ +..- ....+|. +.
T Consensus 118 ~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~ 187 (426)
T PF13520_consen 118 QFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSF-SGFNSLSFSLSTFFPS---------GW 187 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC-CHHH----SHSCSSCS---------SS
T ss_pred heeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecc-cccccccccccccCCc---------cc
Confidence 34578888888999999998776654 333333 3455566667765543 1111 1111111 11
Q ss_pred ce-eeeecceeheecchhhhhccCCCCcccceeeehhhhhhhHHHhhcccchhhhccCCCc----cCC------cceeec
Q 005583 175 TG-WISLGGLLLCITGTEAMFADLGHFTALSIRLAFTFFVYPCLVVQYMGQAAYLSKNLDK----IPN------SFYDSI 243 (690)
Q Consensus 175 ~g-~~~LG~V~LciTGaEALyADlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~A~ll~~p~~----~~n------pFy~~i 243 (690)
.+ +..+...+.+.+|-|+.=.-.+-.-+|++..+=..-+.-+.++.-+..-++...-|.+ .+| .+++..
T Consensus 188 ~~~~~~~~~~~~~~~G~e~~~~~~~E~k~k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (426)
T PF13520_consen 188 PGFLAGFSVAFFAFSGFEAIASLAEENKNKTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAV 267 (426)
T ss_dssp SHHHHHHHHHGGGGTTTTHHHHGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHH
T ss_pred cchhhHHHHHHhhcccccccccccccccchhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccc
Confidence 11 3456667888899887655444444556654433322222222222223333332211 112 223332
Q ss_pred -CCcchHHHHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCceeEEecCCccCCceeechhhHHHHHHHh-heeE--Ee
Q 005583 244 -PEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTSRHIYGQIYIPEINWILMILTL-AITI--GF 319 (690)
Q Consensus 244 -P~~~~~p~~vlAtlAaIIASQAlISg~FSli~Qai~Lg~fPrvki~hTS~~~~GQIYIP~vNw~Lmi~~i-~vv~--~F 319 (690)
.++..+.+.+.+.++.+-+-.+.+.+.--++.+.-+-|.+|+. ..+++| +| .|..-.++...+. +..+ .|
T Consensus 268 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~k--~~---~P~~a~~~~~~i~~i~~~~~~~ 341 (426)
T PF13520_consen 268 GGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKW-FAKVNK--FG---TPYNAIILVAVISSILLLLFLF 341 (426)
T ss_dssp HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGG-GGTTSS--SS---SCHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccccccccccccccccccchhhcchhhcccccccccchhhh-hhhccc--cC---CceeeehhhhHHHHHHHHHHHh
Confidence 4577788888888777776666666666677777888999942 222221 22 3655544443333 2222 23
Q ss_pred c---CchhHHhhhhhhhhhHHHHHH
Q 005583 320 Q---DTTLIGNAYGLACMTVMFITT 341 (690)
Q Consensus 320 ~---~s~~l~~AYGlaV~~~MliTT 341 (690)
- +-+.+.+.+.+......+++.
T Consensus 342 ~~~~~~~~l~~~~~~~~~~~~~~~~ 366 (426)
T PF13520_consen 342 IPQSSFDILVSLSSVGYLISYILVI 366 (426)
T ss_dssp SSSSHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 335666666666666666653
No 18
>TIGR00930 2a30 K-Cl cotransporter.
Probab=65.30 E-value=40 Score=42.29 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=18.3
Q ss_pred EEehhHHHHHHHHhhhcccchhhhh
Q 005583 104 LLILACVILVGLFALQHFGTHKVAV 128 (690)
Q Consensus 104 vv~is~~ILv~LF~iQ~~GT~kvg~ 128 (690)
+-.++++++++++.+--+|....++
T Consensus 203 ~~iia~i~l~ll~~In~~Gvk~~ak 227 (953)
T TIGR00930 203 IRIYGTVTVVVLLGISFAGMEWENK 227 (953)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3457778888888888889865544
No 19
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=64.92 E-value=55 Score=35.04 Aligned_cols=83 Identities=11% Similarity=0.107 Sum_probs=52.1
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH----HHHHHHHHhhccccC-Ccc---------hHHHH
Q 005583 326 GNAYGLACMTVMFITTFLMALIIIFVWYKSIFLAGAFLLFFLA----IEGVYLSAAFIKVPQ-GGW---------VPLVL 391 (690)
Q Consensus 326 ~~AYGlaV~~~MliTT~L~~~v~~~~w~~~~~~~~~~~~~F~~----ie~~f~sa~l~K~~~-GGW---------~pl~i 391 (690)
=..||.+|.++.++.++-++..+..+.+.+++.++++.++++. +|-.-+|+ ..|-.. +.. +.+++
T Consensus 15 ~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss-~~~~~~~~~~~~~~~~R~~lAvli 93 (301)
T PF14362_consen 15 YAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSS-IRKSDGSRKRLLQALPRLLLAVLI 93 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999988888888887777777666655 45444443 333222 111 23444
Q ss_pred HHHHHHHHHHHhHhHHHH
Q 005583 392 SSVFMVVMYIWHYGTRKK 409 (690)
Q Consensus 392 a~~~~~iM~~W~~G~~~~ 409 (690)
|.++...+..+-+..++.
T Consensus 94 aivIs~pl~l~iF~~eI~ 111 (301)
T PF14362_consen 94 AIVISEPLELKIFEKEID 111 (301)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555555544
No 20
>PRK10580 proY putative proline-specific permease; Provisional
Probab=59.72 E-value=72 Score=35.87 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=19.5
Q ss_pred CCcchHHHHHHHHHHHHHHHhHhHH
Q 005583 383 QGGWVPLVLSSVFMVVMYIWHYGTR 407 (690)
Q Consensus 383 ~GGW~pl~ia~~~~~iM~~W~~G~~ 407 (690)
.+.++...++.+.+.+.+.++.-.+
T Consensus 423 p~~~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 423 PDTRISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577788888888888888887644
No 21
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=57.87 E-value=1.1e+02 Score=34.59 Aligned_cols=44 Identities=7% Similarity=-0.160 Sum_probs=27.3
Q ss_pred cCCcchHHHHHHHHHHHHhhhhheeechhhHHHHHHHhCCCCce
Q 005583 243 IPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRV 286 (690)
Q Consensus 243 iP~~~~~p~~vlAtlAaIIASQAlISg~FSli~Qai~Lg~fPrv 286 (690)
..++..+.+.+.+.++.+-+..+.+.++=-+..+.-+-|.+|+.
T Consensus 274 ~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~ 317 (468)
T TIGR03810 274 VGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKY 317 (468)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 34455555555555555555556566665666667788999965
No 22
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=56.64 E-value=12 Score=42.80 Aligned_cols=106 Identities=24% Similarity=0.301 Sum_probs=68.5
Q ss_pred hhheeechhhHHHH-HHHhCCCCceeEEecCCccCC----ceeechhhHHHHHHHhheeEEecCchhHHhhhhhhhhhHH
Q 005583 263 SQAIITATFSIVKQ-CHSLGCFPRVKVVHTSRHIYG----QIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVM 337 (690)
Q Consensus 263 SQAlISg~FSli~Q-ai~Lg~fPrvki~hTS~~~~G----QIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGlaV~~~M 337 (690)
+|=.|.+.+...+. .-+-|-.||+-+...=++..| |+|+|.+= +..+.=|-.-=|-++-.+=-.++||.+.
T Consensus 208 pqFti~~~~~~s~~~~~sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~L----iVilSWVSFWin~~a~pARv~lGITTVL 283 (459)
T KOG3643|consen 208 PQFTITEYHVTSRLVSFSTGNYSRLSLSFQLRRNIGFYILQTYIPSTL----IVILSWVSFWINRDASPARVALGITTVL 283 (459)
T ss_pred cceEEEEEEEEEEEEEEccccceeEEEEEEEEeeccEEEEeeecchhh----hhHHhHhHhhhccccchhheeeceehHH
Confidence 35555555543322 223799999999999888888 99999752 1122222233355666667889999999
Q ss_pred HHHHHHHHHHHH-----HHHhchhhHHHHHHHHHHH-HHHH
Q 005583 338 FITTFLMALIII-----FVWYKSIFLAGAFLLFFLA-IEGV 372 (690)
Q Consensus 338 liTT~L~~~v~~-----~~w~~~~~~~~~~~~~F~~-ie~~ 372 (690)
.|||++...=.. ++.-.-+.+.++|+.+|++ +|-+
T Consensus 284 TMTTl~t~~n~slPrvSYVKAiDiYL~vCFvfVF~sLLEYA 324 (459)
T KOG3643|consen 284 TMTTLMTSTNESLPRVSYVKAIDVYLGVCFVFVFLSLLEYA 324 (459)
T ss_pred hHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHHHHHHH
Confidence 999998764221 2344456667777777776 4543
No 23
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=50.40 E-value=70 Score=35.64 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=18.3
Q ss_pred ehhHHHHHHHHhhhcccchhhhhhh
Q 005583 106 ILACVILVGLFALQHFGTHKVAVMF 130 (690)
Q Consensus 106 ~is~~ILv~LF~iQ~~GT~kvg~~F 130 (690)
.+++++++++..+.-+|.+..+++-
T Consensus 123 ~~~~~~~~~~~~ln~~g~~~~~~i~ 147 (442)
T TIGR00908 123 LAALVFYIVFIGINILGVGEAAKLE 147 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4566677777888889988777653
No 24
>PRK10249 phenylalanine transporter; Provisional
Probab=49.01 E-value=1e+02 Score=34.81 Aligned_cols=101 Identities=22% Similarity=0.238 Sum_probs=51.5
Q ss_pred hhHHHHHHHHhhhcccchhhhhh---hhhHHHHHHHHHHHHHHHhhcccCcceeeecChHHHHHH--HhhcCcce-eeee
Q 005583 107 LACVILVGLFALQHFGTHKVAVM---FAPIIIVWLISIFAVGLYNVIHWNPKVISAISPLYIIKY--FRETGKTG-WISL 180 (690)
Q Consensus 107 is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~vWF~~i~~~Giyni~~~~p~VlkAlnP~ya~~f--~~~~~~~g-~~~L 180 (690)
+..++++++..+.-+|.+..|++ +.=+.++..+.+.++|+.-+...++.- ..++.+..+. +..++..| +..+
T Consensus 138 ~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (458)
T PRK10249 138 WAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGE--KASIDNLWRYGGFFATGWNGLILSL 215 (458)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--CCChhhccCCCCCCCCcHHHHHHHH
Confidence 45666777778888888766643 333344455555556665443322210 1111111000 00122223 2345
Q ss_pred cceeheecchhhh--hccCCCCcccceeeeh
Q 005583 181 GGLLLCITGTEAM--FADLGHFTALSIRLAF 209 (690)
Q Consensus 181 G~V~LciTGaEAL--yADlGHFg~~~Irisw 209 (690)
..++.+.+|-|.. .|+=-+-.+|+|-.+=
T Consensus 216 ~~~~~af~G~e~~~~~a~E~~~P~k~iPrai 246 (458)
T PRK10249 216 AVIMFSFGGLELIGITAAEARDPEKSIPKAV 246 (458)
T ss_pred HHHHHHHcCHHHHHHHHHHhcCHhhHHHHHH
Confidence 5567778898865 5555566667665543
No 25
>PRK10746 putative transport protein YifK; Provisional
Probab=48.46 E-value=1.1e+02 Score=34.66 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=18.8
Q ss_pred cchHHHHHHHHHHHHHHHhHhHHHHH
Q 005583 385 GWVPLVLSSVFMVVMYIWHYGTRKKY 410 (690)
Q Consensus 385 GW~pl~ia~~~~~iM~~W~~G~~~~~ 410 (690)
.......+.+++.+++.++...+.-+
T Consensus 427 ~~~~~~~~~~~~~~~~~~y~~~~~~~ 452 (461)
T PRK10746 427 TRMSLFVGIIFLLAVTLIYKVFGLNR 452 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45678888888888888777655443
No 26
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=47.77 E-value=2e+02 Score=32.10 Aligned_cols=44 Identities=9% Similarity=0.255 Sum_probs=26.1
Q ss_pred ehhHHHHHHHHhhhcccch---hhhhhhhhHHHHHHHHHHHHHHHhh
Q 005583 106 ILACVILVGLFALQHFGTH---KVAVMFAPIIIVWLISIFAVGLYNV 149 (690)
Q Consensus 106 ~is~~ILv~LF~iQ~~GT~---kvg~~FgPIm~vWF~~i~~~Giyni 149 (690)
.+.+++++++..+.-+|.+ |+...+.=+.++-++.+.++|++..
T Consensus 129 ~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~ 175 (445)
T PRK11357 129 FIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWF 175 (445)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566667777788889875 4444444334444445555666543
No 27
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=45.81 E-value=19 Score=37.79 Aligned_cols=30 Identities=27% Similarity=0.697 Sum_probs=25.4
Q ss_pred cccCCcchHHHHHHHHHHHHHHHhHhHHHH
Q 005583 380 KVPQGGWVPLVLSSVFMVVMYIWHYGTRKK 409 (690)
Q Consensus 380 K~~~GGW~pl~ia~~~~~iM~~W~~G~~~~ 409 (690)
|=.+|||+.+++++++..+..+|++--+.+
T Consensus 257 ~~i~~G~isiv~Gliiv~iLii~N~kvEv~ 286 (304)
T COG4059 257 VSIQGGWISIVAGLIIVLILIIWNRKVEVK 286 (304)
T ss_pred cccccchhhhHHHHHHHHHHHHhcchhhhh
Confidence 334899999999999999999999865554
No 28
>PRK10238 aromatic amino acid transporter; Provisional
Probab=45.63 E-value=2.1e+02 Score=32.30 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=52.8
Q ss_pred hhHHHHHHHHhhhcccchhhhhh---hhhHHHHHHHHHHHHHHHhhccc--Ccc-eeeecChHHHHHHHhhcCccee-ee
Q 005583 107 LACVILVGLFALQHFGTHKVAVM---FAPIIIVWLISIFAVGLYNVIHW--NPK-VISAISPLYIIKYFRETGKTGW-IS 179 (690)
Q Consensus 107 is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~vWF~~i~~~Giyni~~~--~p~-VlkAlnP~ya~~f~~~~~~~g~-~~ 179 (690)
..++++++++.+.-+|+...|.+ +.-+-++-++.+-++|+.-+... +|. .+.-+.+. .-+..++..|+ ..
T Consensus 129 ~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~ 205 (456)
T PRK10238 129 SAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQ---GGFLPHGFTGLVMM 205 (456)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCC---CCCccccHHHHHHH
Confidence 45556667788888998766642 23333333333333344433321 121 11110000 00011111122 23
Q ss_pred ecceeheecchhh--hhccCCCCcccceeeehhhhhhhHHHhhccc
Q 005583 180 LGGLLLCITGTEA--MFADLGHFTALSIRLAFTFFVYPCLVVQYMG 223 (690)
Q Consensus 180 LG~V~LciTGaEA--LyADlGHFg~~~Irisw~~~V~P~LlL~Y~G 223 (690)
++.++.+.+|-|+ ..|+=-+=.+|++-.|=.. +...+.+.|++
T Consensus 206 ~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~-~~~~i~~~y~~ 250 (456)
T PRK10238 206 MAIIMFSFGGLELVGITAAEADNPEQSIPKATNQ-VIYRILIFYIG 250 (456)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHH-HHHHHHHHHHH
Confidence 4556778888887 4454446666777666533 33344455554
No 29
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=43.84 E-value=1.9e+02 Score=33.37 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=23.5
Q ss_pred ceeheecchhhh--hccCCCCcccceeeehhhhhhhHHHhhcccchhh
Q 005583 182 GLLLCITGTEAM--FADLGHFTALSIRLAFTFFVYPCLVVQYMGQAAY 227 (690)
Q Consensus 182 ~V~LciTGaEAL--yADlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~A~ 227 (690)
+++.+.+|-|+. .|+==+-.+|++-.|=...+.-+.++.++|--++
T Consensus 202 ~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i 249 (507)
T TIGR00910 202 AFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSI 249 (507)
T ss_pred HHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 345567888865 4444455566665554443333444444433333
No 30
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=42.87 E-value=86 Score=35.09 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=16.6
Q ss_pred hhHHHHHHHHhhhcccchhhhhh
Q 005583 107 LACVILVGLFALQHFGTHKVAVM 129 (690)
Q Consensus 107 is~~ILv~LF~iQ~~GT~kvg~~ 129 (690)
+.+++++++..+.-+|++..+++
T Consensus 128 ~~~~~~~~~~~ln~~gvk~~~~i 150 (445)
T PRK10644 128 TCVVVLWIFVLLNIVGPKMITRV 150 (445)
T ss_pred HHHHHHHHHHHHHHhchHHHHHH
Confidence 45666667788889998776653
No 31
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=41.98 E-value=26 Score=38.38 Aligned_cols=88 Identities=23% Similarity=0.522 Sum_probs=52.0
Q ss_pred hhHHHHHHHHhhhcccchhhhh--hhhhHHHHHHHHHHHHHHH---------------------hhcccCcceeeecChH
Q 005583 107 LACVILVGLFALQHFGTHKVAV--MFAPIIIVWLISIFAVGLY---------------------NVIHWNPKVISAISPL 163 (690)
Q Consensus 107 is~~ILv~LF~iQ~~GT~kvg~--~FgPIm~vWF~~i~~~Giy---------------------ni~~~~p~VlkAlnP~ 163 (690)
.+|+++.=.|+-|| |-.++|+ +.|-+.+.|.++-...++. -++||-|+..
T Consensus 212 mt~Iti~Qc~~yeR-~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~mTliKYiPQa~------ 284 (372)
T KOG3145|consen 212 MTVITILQCFFYER-GWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAMTLIKYIPQAY------ 284 (372)
T ss_pred HHHHHHHHHHhhhh-cccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh------
Confidence 34444444555544 5556666 5566666665544333321 2344433321
Q ss_pred HHHHHHhhcCcceeeeecceeheecchhh-----------------hhccCCCCcccce
Q 005583 164 YIIKYFRETGKTGWISLGGLLLCITGTEA-----------------MFADLGHFTALSI 205 (690)
Q Consensus 164 ya~~f~~~~~~~g~~~LG~V~LciTGaEA-----------------LyADlGHFg~~~I 205 (690)
.=+.|...+|| +.|+|+|=+|||-| .|+|+|-||-.=+
T Consensus 285 ---mN~tRKSt~gw-sIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~v 339 (372)
T KOG3145|consen 285 ---MNFTRKSTVGW-SIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLV 339 (372)
T ss_pred ---hcceecccccc-ccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhH
Confidence 12345556787 68999999999965 6899999986543
No 32
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=41.90 E-value=3.6e+02 Score=30.24 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=26.1
Q ss_pred ehhHHHHHHHHhhhcccchhhhhhhhh---HHHHHHHHHHHHHHHhhc
Q 005583 106 ILACVILVGLFALQHFGTHKVAVMFAP---IIIVWLISIFAVGLYNVI 150 (690)
Q Consensus 106 ~is~~ILv~LF~iQ~~GT~kvg~~FgP---Im~vWF~~i~~~Giyni~ 150 (690)
.+++++++++..+.-+|++..+.+--. +.++-++.+.++|+..+.
T Consensus 128 ~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~ 175 (452)
T TIGR01773 128 LFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIF 175 (452)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777888898777755433 233333444445655443
No 33
>PRK11021 putative transporter; Provisional
Probab=36.06 E-value=4.6e+02 Score=28.97 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=21.2
Q ss_pred EehhHHHHHHHHhhhcccchhhhhhhh
Q 005583 105 LILACVILVGLFALQHFGTHKVAVMFA 131 (690)
Q Consensus 105 v~is~~ILv~LF~iQ~~GT~kvg~~Fg 131 (690)
.++++++++++..+.-+|.+..+++-.
T Consensus 116 ~~~~~~~~~~~~~ln~~Gv~~~~~~~~ 142 (410)
T PRK11021 116 LLAELLTLALLWLLNLRGASSSANLQT 142 (410)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456778888889999999888876543
No 34
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=35.94 E-value=1.5e+02 Score=30.20 Aligned_cols=21 Identities=10% Similarity=0.385 Sum_probs=16.8
Q ss_pred CcchHHHHHHHHHHHHHHHhH
Q 005583 384 GGWVPLVLSSVFMVVMYIWHY 404 (690)
Q Consensus 384 GGW~pl~ia~~~~~iM~~W~~ 404 (690)
.+|+-+++|++.+.+-+-|++
T Consensus 179 ~~~~~iiig~i~~~~~~~lkk 199 (206)
T PF06570_consen 179 PPWVYIIIGVIAFALRFYLKK 199 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 389999999998888766653
No 35
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=32.55 E-value=20 Score=38.78 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=25.4
Q ss_pred cCCCCcccceeeehhhhhhhHHHhhcccch-----hhhccCCCccC-Cc
Q 005583 196 DLGHFTALSIRLAFTFFVYPCLVVQYMGQA-----AYLSKNLDKIP-NS 238 (690)
Q Consensus 196 DlGHFg~~~Irisw~~~V~P~LlL~Y~GQ~-----A~ll~~p~~~~-np 238 (690)
+=+++||.+|||+|-. ..||+ .=||+|||-+. ||
T Consensus 171 gk~Y~GRG~iQlsWNy---------NYG~ag~alg~dLL~~Pe~V~~np 210 (286)
T KOG4742|consen 171 GKSYYGRGPIQLSWNY---------NYGAAGKALGLDLLRNPELVAMNP 210 (286)
T ss_pred CCcccccCcccccccc---------cccHhHhhcCchhhcCcchhccCc
Confidence 4479999999999998 34544 34788998765 54
No 36
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=32.02 E-value=5.9e+02 Score=29.90 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=26.6
Q ss_pred EehhHHHHHHHHhhhcccchhhhh---hhhhHHHHHHHHHHHHHHHh
Q 005583 105 LILACVILVGLFALQHFGTHKVAV---MFAPIIIVWLISIFAVGLYN 148 (690)
Q Consensus 105 v~is~~ILv~LF~iQ~~GT~kvg~---~FgPIm~vWF~~i~~~Giyn 148 (690)
..+++++++++..+--+|+...++ .+.-+.++-++.+.+.|+..
T Consensus 162 ~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~ 208 (557)
T TIGR00906 162 DFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTK 208 (557)
T ss_pred hHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 346677777777888899776664 34444444444455556543
No 37
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=30.18 E-value=11 Score=37.92 Aligned_cols=71 Identities=24% Similarity=0.407 Sum_probs=51.1
Q ss_pred CCCCChhHHHHHHHHHHHHHcCcEE-EeeceEEEecCCCchHHHHHHHHHHHHH---hhhcCCCCcccccCCCCEEEeee
Q 005583 611 DPGMDPAVREELMDLIQAKEAGIAY-IMGHSYVKARRSSSFVKRFMIDILYSFL---RKNCRGPSVALNIPHISLIEVGM 686 (690)
Q Consensus 611 ~~~~~~~v~eEl~~L~~A~eaGVvY-IlG~~~v~ar~~Ss~~Kr~vIn~~Y~FL---RkNcR~~~~~L~IP~~~lleVGm 686 (690)
.++.+|++++- +++++++|.-- |+.+ .+.++=..+..|+=+|++|.-. +++.|.....+++|.++.+-||-
T Consensus 44 ~~~~tpe~~~W---~~e~k~~gi~v~vvSN--n~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGD 118 (175)
T COG2179 44 NPDATPELRAW---LAELKEAGIKVVVVSN--NKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVGD 118 (175)
T ss_pred CCCCCHHHHHH---HHHHHhcCCEEEEEeC--CCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEcc
Confidence 34444555544 45567778754 4443 6666667888899999887763 57788888999999999999983
No 38
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=28.89 E-value=2e+02 Score=33.40 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=14.7
Q ss_pred HhhhhhhhhhHHHHHHHHHH
Q 005583 326 GNAYGLACMTVMFITTFLMA 345 (690)
Q Consensus 326 ~~AYGlaV~~~MliTT~L~~ 345 (690)
-+.||+.+.+.+++...+..
T Consensus 23 I~~YGl~ialGil~a~~l~~ 42 (460)
T PRK13108 23 VRAYAVCVITGIIVALLIGD 42 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37799999888887665543
No 39
>PRK11387 S-methylmethionine transporter; Provisional
Probab=27.83 E-value=4e+02 Score=30.19 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=13.4
Q ss_pred hHHHHHHHHhhhcccchhhhh
Q 005583 108 ACVILVGLFALQHFGTHKVAV 128 (690)
Q Consensus 108 s~~ILv~LF~iQ~~GT~kvg~ 128 (690)
.++++++++.+.-+|....++
T Consensus 133 ~~~~~~~~~~in~~gvk~~~~ 153 (471)
T PRK11387 133 CLLFCALIFGLNVVSTRFFAE 153 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 344455667778888776653
No 40
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=26.10 E-value=1e+03 Score=27.04 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=18.3
Q ss_pred EEehhHHHHHHHHhhhcccchhhhhh
Q 005583 104 LLILACVILVGLFALQHFGTHKVAVM 129 (690)
Q Consensus 104 vv~is~~ILv~LF~iQ~~GT~kvg~~ 129 (690)
...++.++++++..+.-+|++..+++
T Consensus 144 ~~~~~~~~~~~~~~in~~g~k~~~~i 169 (475)
T TIGR03428 144 AVLLGSVLLVLTTVINCIGVEWMSRV 169 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34566667777888888998766553
No 41
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=25.85 E-value=55 Score=25.96 Aligned_cols=29 Identities=31% Similarity=0.622 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhHhHHHHHhhhhccCCChH
Q 005583 393 SVFMVVMYIWHYGTRKKYNFDLHNKVSLR 421 (690)
Q Consensus 393 ~~~~~iM~~W~~G~~~~~~~~~~~~~~~~ 421 (690)
++++.....|.|-+++|.++|...+++++
T Consensus 19 ~~~F~gi~~w~~~~~~k~~~e~aa~lpl~ 47 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPRNKKRFEEAANLPLD 47 (49)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHccCcc
Confidence 44444455666655556666665555544
No 42
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=25.67 E-value=5e+02 Score=29.43 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=17.3
Q ss_pred ehhHHHHHHHHhhhcccchhhhhh
Q 005583 106 ILACVILVGLFALQHFGTHKVAVM 129 (690)
Q Consensus 106 ~is~~ILv~LF~iQ~~GT~kvg~~ 129 (690)
.++++++++++.+.-+|+...+++
T Consensus 131 ~~~~~~~~~~~~ln~~Gi~~~~~i 154 (473)
T TIGR00905 131 LGASVLLWVFTFLVLRGVRQAAFI 154 (473)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHH
Confidence 456666667788999999776543
No 43
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=25.67 E-value=3.4e+02 Score=30.29 Aligned_cols=137 Identities=18% Similarity=0.265 Sum_probs=83.7
Q ss_pred eeechhhHHHHHHHhC-CCCceeEEecCCccCCceeechhhHHHHHHHhheeEEec-------CchhHHhhhhhhhhhHH
Q 005583 266 IITATFSIVKQCHSLG-CFPRVKVVHTSRHIYGQIYIPEINWILMILTLAITIGFQ-------DTTLIGNAYGLACMTVM 337 (690)
Q Consensus 266 lISg~FSli~Qai~Lg-~fPrvki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~-------~s~~l~~AYGlaV~~~M 337 (690)
+||-+|.-+.|..-+= .|||-| -+..|=.+..+|+++..++-+..+ +.+....---.....-.
T Consensus 168 lis~~~l~l~qvqiv~rlF~R~~---------eK~~i~~vG~~L~i~~~il~ai~~f~~~~~~~~~~~~~lp~~~yl~~i 238 (348)
T PF08733_consen 168 LISNFFLQLAQVQIVIRLFPRQK---------EKRIIFWVGFILIILDQILWAINQFSYFDSDPNSFLDILPAFSYLFRI 238 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcccC---------cEEEEeeHHHHHHHHHHHHHHHHHhccCCCCccccccchHHHHHHHHH
Confidence 5777888888887654 458843 344467778888887666544433 22222222223334444
Q ss_pred HHHHHHHHHHHHHHHhc--------hhhHHHHHHHHHHHHHHHHHHHhhccccCCcc---hHHHHHHHHHHHHHHHhHhH
Q 005583 338 FITTFLMALIIIFVWYK--------SIFLAGAFLLFFLAIEGVYLSAAFIKVPQGGW---VPLVLSSVFMVVMYIWHYGT 406 (690)
Q Consensus 338 liTT~L~~~v~~~~w~~--------~~~~~~~~~~~F~~ie~~f~sa~l~K~~~GGW---~pl~ia~~~~~iM~~W~~G~ 406 (690)
.+-++....+..+.|.+ +.+...++-++...+-..||..-..+..-=|| ++-+..++...+-+=|-+-=
T Consensus 239 al~~~ya~~v~~y~~~k~k~~~~~~~~~~L~il~~~~i~l~~vffI~dis~~~v~~w~~~~~~~~~~~~tVivWEWi~ri 318 (348)
T PF08733_consen 239 ALSTLYAAWVIYYIISKKKYCFDYKQMIPLAILNLLLILLPVVFFILDISNWWVSGWSEYFRWVLYVAATVIVWEWINRI 318 (348)
T ss_pred HHHHHHHHHHHHHHHhhhhhheecchHHHHHHHHHHHHHHHHHhheeEccchhhhhHHHHHHHHHHHHHhhhHHHhhhHH
Confidence 55566666666665543 34455666667777888999888888888888 55566666665555555443
Q ss_pred HHHHh
Q 005583 407 RKKYN 411 (690)
Q Consensus 407 ~~~~~ 411 (690)
+++.+
T Consensus 319 e~lEr 323 (348)
T PF08733_consen 319 ERLER 323 (348)
T ss_pred HHHHH
Confidence 33333
No 44
>PRK11492 hyfE hydrogenase 4 membrane subunit; Provisional
Probab=22.73 E-value=7.8e+02 Score=25.72 Aligned_cols=147 Identities=13% Similarity=0.139 Sum_probs=75.5
Q ss_pred heeechhhHHHHHHH-----hCCCCceeEEecCCccCCceeechhhHHHHHHHhheeEEecCchhHHhhhhhhhhhHHHH
Q 005583 265 AIITATFSIVKQCHS-----LGCFPRVKVVHTSRHIYGQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFI 339 (690)
Q Consensus 265 AlISg~FSli~Qai~-----Lg~fPrvki~hTS~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGlaV~~~Mli 339 (690)
..++|.-+++-.++- .....|+++.+--+...|.-+-+.+.-.+.+.|..++.-+....+...-..+++..+.+.
T Consensus 57 L~~~a~~~l~~K~iliP~lL~r~~~k~~~~re~~p~i~~~~s~ll~~~~~i~s~~~~~~i~~~~~~~~~~~l~~a~~lf~ 136 (216)
T PRK11492 57 LLIWSITAFITKVLLVPLIMTYAARKLGDNIEEEPVFGPAMSILLAALIVLLCAFVVQPVKLPMALGLKPALAVSLGHFL 136 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccchHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 444555555444432 233556676545554566666666676666676666655554444444455555555554
Q ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH-HHH--HHhhcccc----CCcchHHHHHHHHHHHHHHHhHhHHHHHhh
Q 005583 340 TTFLMALIIIFVWYKSIFLAGAFLLFFLAIEG-VYL--SAAFIKVP----QGGWVPLVLSSVFMVVMYIWHYGTRKKYNF 412 (690)
Q Consensus 340 TT~L~~~v~~~~w~~~~~~~~~~~~~F~~ie~-~f~--sa~l~K~~----~GGW~pl~ia~~~~~iM~~W~~G~~~~~~~ 412 (690)
..++. ... |+|.+..+ +.|..+|- .++ .+.....| -|--.-.+++.+++.+.. ..-+
T Consensus 137 iGl~~----~i~-Rrn~i~~i---ig~~~meNgv~L~~~~~~~~~p~~VE~g~~~d~l~av~i~~i~a--------~~i~ 200 (216)
T PRK11492 137 LGLLC----IVS-QRNILKQI---FGYCLMENGSHLTLALLAYNAPELVEIGIATDAIFAVIIMVLLA--------RKIY 200 (216)
T ss_pred HHHHH----HHH-HhHHHHHH---HHHHHHHHHHHHHHHHHHhhcchhhhccccccHHHHHHHHHHHH--------HHHH
Confidence 44443 332 34433332 22333332 222 22222222 144566777777777777 2223
Q ss_pred hhccCCChHHHHhcC
Q 005583 413 DLHNKVSLRWLLGLG 427 (690)
Q Consensus 413 ~~~~~~~~~~l~~l~ 427 (690)
+..+.++.|++.++.
T Consensus 201 r~~~sid~~~l~~Lk 215 (216)
T PRK11492 201 RTHGTLDVNKLTALK 215 (216)
T ss_pred HhcCCCcHHHHHhcC
Confidence 345567777776653
No 45
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=21.50 E-value=58 Score=36.72 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=20.5
Q ss_pred eeeecceeheecchh--hhhccCCCCcccceeeeh
Q 005583 177 WISLGGLLLCITGTE--AMFADLGHFTALSIRLAF 209 (690)
Q Consensus 177 ~~~LG~V~LciTGaE--ALyADlGHFg~~~Irisw 209 (690)
|..+.-++.+.+|-| +.+|+==.=.+|+|..+=
T Consensus 203 ~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~ 237 (478)
T PF00324_consen 203 FAALVFAFFAFVGFESIAILAEEAKNPRKTIPRAT 237 (478)
T ss_pred HHhhhhhhcccccccccccccccCCCchhhhhhHh
Confidence 455666778888888 345554455566665443
No 46
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=20.14 E-value=3e+02 Score=28.59 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=32.2
Q ss_pred hHHHHHHHhheeEEecCchhHHhhh--hhhhhhHHHHHHHHHHHHHHHH
Q 005583 305 NWILMILTLAITIGFQDTTLIGNAY--GLACMTVMFITTFLMALIIIFV 351 (690)
Q Consensus 305 Nw~Lmi~~i~vv~~F~~s~~l~~AY--GlaV~~~MliTT~L~~~v~~~~ 351 (690)
|-..+.-.+.+.-...-|+++.||- |+|++.||.+++.+..++-.++
T Consensus 14 ~N~vl~~~LGlCp~l~vs~~~~~a~gmGlAvtfV~~~s~~~~~~i~~~i 62 (200)
T TIGR01940 14 ENMALSFFLGMCTFLAVSKKVSTAFGLGVAVTFVLTITVPINNLIYTYI 62 (200)
T ss_pred hhHHHHHHHhcCchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555566677788876 6778888888888887666553
No 47
>PF02660 G3P_acyltransf: Glycerol-3-phosphate acyltransferase; InterPro: IPR003811 This entry describes glycerol-3-phosphate acyltransferase. It catalyses the transfer of an acyl group from acyl-phosphate (acyl-PO4) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilises acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP. ; GO: 0005886 plasma membrane
Probab=20.08 E-value=8.9e+02 Score=24.30 Aligned_cols=84 Identities=13% Similarity=0.239 Sum_probs=45.1
Q ss_pred EEecCchhHHhhhhhhhhhHHHHHHHHHH--HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHH
Q 005583 317 IGFQDTTLIGNAYGLACMTVMFITTFLMA--LIIIFVWYKSIFLAGAFLLFFLAIEGVYLSAAFIKVPQGGWVPLVLSSV 394 (690)
Q Consensus 317 ~~F~~s~~l~~AYGlaV~~~MliTT~L~~--~v~~~~w~~~~~~~~~~~~~F~~ie~~f~sa~l~K~~~GGW~pl~ia~~ 394 (690)
+.||--..++.+.|.-....-..+-+.+. ++...++|....-.+....++... .++ ++.+.+..+..+
T Consensus 91 l~FkGGKGvAt~~G~ll~l~p~~~li~~~~~~~~~~~~r~~s~~s~~~~~~~~~~--~~~--------~~~~~~~~~~~~ 160 (178)
T PF02660_consen 91 LKFKGGKGVATSLGVLLALSPWLALIALAVFLILLLITRYVSLASIIAFIILPIL--AWL--------WGYSLAYVLFAI 160 (178)
T ss_pred hCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHH--------HhCCHHHHHHHH
Confidence 46888888999988765554433333222 222333333222222211111111 111 566777777777
Q ss_pred HHHHHHHHhHhHHHHH
Q 005583 395 FMVVMYIWHYGTRKKY 410 (690)
Q Consensus 395 ~~~iM~~W~~G~~~~~ 410 (690)
+..++.+|+.-+++++
T Consensus 161 ~l~~li~~~h~~Ni~r 176 (178)
T PF02660_consen 161 ILALLIIYRHRENIKR 176 (178)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777888887776653
Done!