Query 005583
Match_columns 690
No_of_seqs 217 out of 833
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 19:15:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005583.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2088-2092//hhsearch_pdb/005583hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 1.0 1 1 39.4 11.4 100 104-210 130-239 (511)
2 3gia_A Uncharacterized protein 1.0 1 1 36.8 12.0 109 78-198 98-212 (444)
3 3l1l_A Arginine/agmatine antip 1.0 1 1 32.8 12.2 82 106-195 127-212 (445)
4 3n4p_A Terminase subunit UL89 1.0 1 1 18.4 0.0 11 618-628 222-232 (279)
5 3hbe_X Class IV chitinase CHIA 1.0 1 1 17.9 -2.1 43 199-249 97-144 (204)
6 3l8q_A Cellulosomal scaffoldin 1.0 1 1 17.9 0.8 13 150-162 209-221 (350)
7 2l6n_A Uncharacterized protein 1.0 1 1 17.3 1.6 24 660-685 37-60 (132)
8 2cjl_A Chitinase G, secreted c 1.0 1 1 16.9 -2.9 43 199-249 91-138 (204)
9 3luu_A Uncharacterized protein 1.0 1 1 16.7 1.3 22 660-681 35-56 (101)
10 1jl0_A Adometdc, S-adenosylmet 1.0 1 1 16.5 1.0 38 602-639 113-151 (334)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=1.00 E-value=1 Score=39.45 Aligned_cols=100 Identities=20% Similarity=0.172 Sum_probs=56.4
Q ss_pred EEEHHHHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCCCEE----EECCHHHHHHHHHHCCCC
Q ss_conf 870367999999866101210131113559----999999998877786304694345----644968999998662952
Q 005583 104 LLILACVILVGLFALQHFGTHKVAVMFAPI----IIVWLISIFAVGLYNVIHWNPKVI----SAISPLYIIKYFRETGKT 175 (690)
Q Consensus 104 vv~is~~ILv~LF~~Q~~GT~kvg~~F~Pi----m~vWf~~i~~~Giyni~~~~p~Vl----~AlnP~ya~~f~~~~~~~ 175 (690)
...+.+++++.+..+.-+|....+++..-. +++-++.+..+|+..+...+|.-+ ..+.|.. .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-------CCCH
T ss_conf 999999999999999981809999998999999999999999999999994698666667612258886-------6413
Q ss_pred EEEEECCEEHEECCHHHHHCCCCCCC--CCCEEEEHH
Q ss_conf 10130110000122123220479876--432232112
Q 005583 176 GWISLGGLLLCITGTEAMFADLGHFT--ALSIRLAFT 210 (690)
Q Consensus 176 g~~~LG~v~LciTG~EALyADlGHfg--~~~I~~sw~ 210 (690)
+|..+..++.+.+|-|+.-.--+..- +|++..+-.
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 9999999999993298888889864286543069999
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=1.00 E-value=1 Score=36.81 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=53.1
Q ss_pred CCCCCCEEEECCCCCEEECCCCCCC-EEEEHHHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0134212454012531104888996-387036799999986610121013111---355999999999887778630469
Q 005583 78 VLTPAISVLSSVSGLQVTENKLTDG-ELLILACVILVGLFALQHFGTHKVAVM---FAPIIIVWLISIFAVGLYNVIHWN 153 (690)
Q Consensus 78 vlTPAiSVlSAVeGl~v~~p~~~~~-~vv~is~~ILv~LF~~Q~~GT~kvg~~---F~Pim~vWf~~i~~~Giyni~~~~ 153 (690)
+++.|....+..+-+....|...+. ....+++++++.+..+.-+|++..++. +..+.++=++.+.+.|+... +
T Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~ 174 (444)
T 3gia_A 98 VISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---H 174 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_conf 9999999999999999982888731789999999999999999983899999999999999999999999999975---8
Q ss_pred CCEEEE-CCHHHHHHHHHHCCCCE-EEEECCEEHEECCHHHHHCCCC
Q ss_conf 434564-49689999986629521-0130110000122123220479
Q 005583 154 PKVISA-ISPLYIIKYFRETGKTG-WISLGGLLLCITGTEAMFADLG 198 (690)
Q Consensus 154 p~Vl~A-lnP~ya~~f~~~~~~~g-~~~LG~v~LciTG~EALyADlG 198 (690)
|+-+.. ++|. +..+ +..+...+.+.+|-|+.-.--+
T Consensus 175 ~~~~~~~~~~~---------g~~~~~~~~~~~~~a~~G~e~~~~~~~ 212 (444)
T 3gia_A 175 PSYVIPDLAPS---------AVSGMIFASAIFFLSYMGFGVITNASE 212 (444)
T ss_dssp GGGTSCCCSHH---------HHHHHHHHHHHGGGGGTHHHHHHTTGG
T ss_pred HHHCCCCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 22158877875---------357899999999999970999998798
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=1.00 E-value=1 Score=32.83 Aligned_cols=82 Identities=16% Similarity=0.115 Sum_probs=41.7
Q ss_pred EHHHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 036799999986610121013111---3559999999998877786304694345-644968999998662952101301
Q 005583 106 ILACVILVGLFALQHFGTHKVAVM---FAPIIIVWLISIFAVGLYNVIHWNPKVI-SAISPLYIIKYFRETGKTGWISLG 181 (690)
Q Consensus 106 ~is~~ILv~LF~~Q~~GT~kvg~~---F~Pim~vWf~~i~~~Giyni~~~~p~Vl-~AlnP~ya~~f~~~~~~~g~~~LG 181 (690)
.+++++++.+..+.-+|.+..++. +.++.++=++.+...| +...+++.+ ..++|.-.- ....-+..+.
T Consensus 127 ~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 198 (445)
T 3l1l_A 127 ITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG---WFWFRGETYMAAWNVSGLG-----TFGAIQSTLN 198 (445)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT---STTCCCCCCCCC----------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCHHHCCCCCCCCCCC-----CHHHHHHHHH
T ss_conf 9999999999999995639999999999999999999999999---9995715306656766775-----0789999999
Q ss_pred CEEHEECCHHHHHC
Q ss_conf 10000122123220
Q 005583 182 GLLLCITGTEAMFA 195 (690)
Q Consensus 182 ~v~LciTG~EALyA 195 (690)
..+.+.+|-|+.-.
T Consensus 199 ~~~~af~G~e~~~~ 212 (445)
T 3l1l_A 199 VTLWSFIGVESASV 212 (445)
T ss_dssp HHHHTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999974999999
No 4
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=1.00 E-value=1 Score=18.40 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999999
Q 005583 618 VREELMDLIQA 628 (690)
Q Consensus 618 v~eEL~~L~~A 628 (690)
|+.=++.|+.-
T Consensus 222 VeYL~eQi~ni 232 (279)
T 3n4p_A 222 IEYLLEQIQNL 232 (279)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHC
T ss_conf 99999998503
No 5
>3hbe_X Class IV chitinase CHIA4-PA2; endochitinase, family 19, conformational changes, chitin-binding, glycosidase, hydrolase; 1.55A {Picea abies} SCOP: d.2.1.0 PDB: 3hbd_A 3hbh_A
Probab=1.00 E-value=1 Score=17.92 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCCCCCEEEEHHHHHHHHHHHHCCCCHHH----HCCCCCCCC-CCCEEECCCCCHH
Q ss_conf 87643223211232434777650341005----001777667-8520306886237
Q 005583 199 HFTALSIRLAFTFFVYPCLVVQYMGQAAY----LSKNLDKIP-NSFYDSIPEPVFW 249 (690)
Q Consensus 199 Hfg~~~I~~sw~~~V~P~LlL~Y~GQ~A~----ll~~p~~~~-npFy~~iP~~~~~ 249 (690)
.+||.+||++|-. ||--=+.+ |+.+|+.+. ||-+......+||
T Consensus 97 Y~GRG~IQLTg~~--------NY~~~g~~lg~Dll~nPdlva~dp~~a~~sA~wfW 144 (204)
T 3hbe_X 97 YHGRGPLQLSWNY--------NYGAAGKSIGFDGLNNPEKVGQDSTISFKTAVWFW 144 (204)
T ss_dssp CCCBTTTTBCSHH--------HHHHHHHHHTSCTTTCGGGGGTCHHHHHHHHHHHH
T ss_pred CCCCCCEECCCHH--------HHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHH
T ss_conf 6478853436288--------99999999588613598998548799998787654
No 6
>3l8q_A Cellulosomal scaffoldin adaptor protein B; dockerin-binding module, protein-protein interactions, linke segment; HET: EDO; 1.57A {Acetivibrio cellulolyticus} PDB: 3fnk_A
Probab=1.00 E-value=1 Score=17.89 Aligned_cols=13 Identities=38% Similarity=0.999 Sum_probs=0.0
Q ss_pred CCCCCCEEEECCH
Q ss_conf 0469434564496
Q 005583 150 IHWNPKVISAISP 162 (690)
Q Consensus 150 ~~~~p~Vl~AlnP 162 (690)
++|||.||+|+||
T Consensus 209 IKYDP~VLqaV~p 221 (350)
T 3l8q_A 209 IKYDPTVLQAVNP 221 (350)
T ss_dssp EECCTTTEEEECT
T ss_pred EEECHHHEEECCC
T ss_conf 1108457250257
No 7
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=1.00 E-value=1 Score=17.32 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEEE
Q ss_conf 99985413899854446998978744
Q 005583 660 YSFLRKNCRGPSVALNIPHISLIEVG 685 (690)
Q Consensus 660 Y~FLRkNcR~~~~~L~IPh~~LiEVG 685 (690)
|.|||.||+.+...-.- ++++..|
T Consensus 37 ~~wLRd~Cpcaec~~~~--qr~l~~~ 60 (132)
T 2l6n_A 37 CELLRVYSPSAEVHGHG--NPVLVTH 60 (132)
T ss_dssp HHHHHHSCSCSSSSSSS--CCCCCCC
T ss_pred HHHHHHCCCCCCCCCCC--CCCCCCC
T ss_conf 99998559980439845--4404567
No 8
>2cjl_A Chitinase G, secreted chitinase; hydrolase, plant enzymes; 1.5A {Streptomyces coelicolor}
Probab=1.00 E-value=1 Score=16.91 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCCCCCEEEEHHHHHHHHHHHHCCCCHHH----HCCCCCCCC-CCCEEECCCCCHH
Q ss_conf 87643223211232434777650341005----001777667-8520306886237
Q 005583 199 HFTALSIRLAFTFFVYPCLVVQYMGQAAY----LSKNLDKIP-NSFYDSIPEPVFW 249 (690)
Q Consensus 199 Hfg~~~I~~sw~~~V~P~LlL~Y~GQ~A~----ll~~p~~~~-npFy~~iP~~~~~ 249 (690)
.+||.+||++|-. ||--=+.+ |+.||+-+. +|-+......+||
T Consensus 91 Y~GRG~iQLT~~~--------NY~~~g~~lg~dll~nPdlv~~dp~~a~~sA~wfW 138 (204)
T 2cjl_A 91 YYGRGPVQLSWNF--------NYKAAGDALGIDLLNNPDLVQNDSAVAWKTGLWYW 138 (204)
T ss_dssp CCCBTTTTBCSHH--------HHHHHHHHHTSCTTTCTTHHHHCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHH--------HHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHH
T ss_conf 0677708785787--------89999999396400499998518798898888876
No 9
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=1.00 E-value=1 Score=16.66 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCCCCCCCCCE
Q ss_conf 9998541389985444699897
Q 005583 660 YSFLRKNCRGPSVALNIPHISL 681 (690)
Q Consensus 660 Y~FLRkNcR~~~~~L~IPh~~L 681 (690)
|.|||.||+.+...-.-+.+++
T Consensus 35 ~~wLRd~c~ca~c~~~~t~qr~ 56 (101)
T 3luu_A 35 FEHLRVECPCAECKGHTPDQAQ 56 (101)
T ss_dssp HHHHHHTCCCC----------C
T ss_pred HHHHHHHCCCHHHCCCCCCCCC
T ss_conf 9999751988455476678612
No 10
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...
Probab=1.00 E-value=1 Score=16.49 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=0.0
Q ss_pred CCCEECCC-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 31000169-999999238999999999998493999600
Q 005583 602 RQVRFQLP-SDPGMDPAVREELMDLIQAKEAGIAYIMGH 639 (690)
Q Consensus 602 ~~~~~~~~-~~~~~~~~v~eEL~~L~~A~eaGVvYIlG~ 639 (690)
.|-.|.-| ..+......+||.+.|++....|.+|++|+
T Consensus 113 sRknf~fP~~Q~~pH~sf~eEv~~L~~~F~~G~aY~~G~ 151 (334)
T 1jl0_A 113 SRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAGYCMGR 151 (334)
T ss_dssp EEECCSSGGGCCTTCSSHHHHHHHHHTTCSSEEEEEESC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 464788836588765898999999998647872799379
Done!