Query 005583
Match_columns 690
No_of_seqs 217 out of 833
Neff 5.0
Searched_HMMs 13730
Date Tue Mar 26 19:20:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005583.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2088-2092//hhsearch_scop/005583hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jl0a_ d.156.1.1 (A:) S-adeno 17.0 21 0.0015 12.1 1.0 29 301-329 31-59 (325)
2 d2yvxa3 f.57.1.1 (A:276-448) M 11.1 31 0.0022 11.0 0.8 116 215-343 12-129 (173)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 10.4 25 0.0018 11.5 -0.2 42 213-256 13-54 (57)
4 d2e74h1 f.23.27.1 (H:3-29) Pet 5.0 71 0.0052 8.7 2.2 19 385-403 5-23 (27)
5 d1or7a2 a.177.1.1 (A:-1-111) S 4.2 86 0.0063 8.1 2.7 25 648-672 73-97 (113)
6 d2j5ha1 g.3.11.7 (A:1-39) Crip 3.5 1.1E+02 0.0081 7.4 0.0 12 377-388 3-14 (39)
7 d3enba1 c.55.3.14 (A:1771-1989 3.3 1.2E+02 0.0086 7.3 1.1 12 286-298 49-60 (219)
8 d3e9oa1 c.55.3.14 (A:1835-2087 3.3 1.2E+02 0.0086 7.3 1.0 12 286-298 57-68 (253)
9 d1iray2 b.1.1.4 (Y:102-204) Ty 3.1 1.3E+02 0.0093 7.0 1.8 57 451-507 22-81 (103)
10 d1ppaa_ a.133.1.2 (A:) Snake p 3.1 88 0.0064 8.1 -0.8 21 180-200 5-27 (121)
No 1
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.02 E-value=21 Score=12.06 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=10.2
Q ss_pred ECHHHHHHHHHHHHEEEEECCCHHHHHHH
Q ss_conf 12116999998741257746820588652
Q 005583 301 IPEINWILMILTLAITIGFQDTTLIGNAY 329 (690)
Q Consensus 301 IP~vNw~Lmi~~i~vv~~F~~s~~l~~AY 329 (690)
||.--|-=|+..+-..+.=..++.--.||
T Consensus 31 i~~~~w~~~L~~a~c~IlS~~sn~~~DAY 59 (325)
T d1jl0a_ 31 IPRSEWDILLKDVQCSIISVTKTDKQEAY 59 (325)
T ss_dssp SCHHHHHHHHHTTTCCEEEEEECSSEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCCEE
T ss_conf 89999999998649779885044565358
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=11.10 E-value=31 Score=10.97 Aligned_cols=116 Identities=9% Similarity=0.168 Sum_probs=56.9
Q ss_pred HHHHHHCCCC--HHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 4777650341--00500177766785203068862377999999788764301000034678989881998740488358
Q 005583 215 PCLVVQYMGQ--AAYLSKNLDKIPNSFYDSIPEPVFWPVFVVATLSAIVGSQAIITATFSIVKQCHSLGCFPRVKVVHTS 292 (690)
Q Consensus 215 P~LlL~Y~GQ--~A~ll~~p~~~~npFy~~iP~~~~~p~~vlAtlAaIIASQA~Isg~Fsii~Qai~Lg~fPrvki~hTS 292 (690)
|=|+++-+|+ +|+++..-|+.-+-+-. =..|.|+ ++-.+.-+++|+. +++-+++++|-.-+-. --
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHCCCCHHHHHHH-----HHHHHHHHCCCCCCHH---HH
T ss_conf 99999999999999999999999999999---9999999--9258763999999-----9999998603433013---99
Q ss_pred CCCCCCEEECHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 854781561211699999874125774682058865210224578899999
Q 005583 293 RHIYGQIYIPEINWILMILTLAITIGFQDTTLIGNAYGLACMTVMFITTFL 343 (690)
Q Consensus 293 ~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiaV~~~m~iTT~L 343 (690)
+....++.+-.+|-+.+-..+.....+.....++-+=|++...+|.+.+++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~ 129 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLV 129 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999989999961445089999999999999999999
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=10.37 E-value=25 Score=11.54 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=25.8
Q ss_pred HHHHHHHHCCCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHH
Q ss_conf 43477765034100500177766785203068862377999999
Q 005583 213 VYPCLVVQYMGQAAYLSKNLDKIPNSFYDSIPEPVFWPVFVVAT 256 (690)
Q Consensus 213 V~P~LlL~Y~GQ~A~ll~~p~~~~npFy~~iP~~~~~p~~vlAt 256 (690)
.+-++++--++-..|+.++.. .+.-|.++|+.+.|-.+.+.|
T Consensus 13 ~~~~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 13 VLLVIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCHHHHHHEEEEEC
T ss_conf 999999999999999983589--975536450644645035431
No 4
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.96 E-value=71 Score=8.67 Aligned_cols=19 Identities=32% Similarity=0.926 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 6068999999988888876
Q 005583 385 GWVPLVLSSVFMVVMYIWH 403 (690)
Q Consensus 385 GW~pl~ia~i~~~iM~~W~ 403 (690)
||+.++.-+.-..-|.+|-
T Consensus 5 gwv~llvvftwsiamvvwg 23 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWG 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHEEEEEEEC
T ss_conf 5758888763223468871
No 5
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=4.25 E-value=86 Score=8.14 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9637899999999998541389985
Q 005583 648 SSFVKRFMIDILYSFLRKNCRGPSV 672 (690)
Q Consensus 648 S~~~KK~vIn~~Y~FLRkNcR~~~~ 672 (690)
.+|+.+++.|.+..++|++-|.+..
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~~ 97 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPPS 97 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999999996478888
No 6
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.46 E-value=1.1e+02 Score=7.44 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=0.0
Q ss_pred HHCCCCCCCCHH
Q ss_conf 421446886068
Q 005583 377 AFIKVPQGGWVP 388 (690)
Q Consensus 377 ~l~K~~~GGW~p 388 (690)
|.--+|||-|+|
T Consensus 3 nCgsvpHg~w~~ 14 (39)
T d2j5ha1 3 HCGSILHGTWLP 14 (39)
T ss_dssp SSCCCCCTTCSS
T ss_pred CCCCCCCCCEEC
T ss_conf 555134876110
No 7
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.28 E-value=1.2e+02 Score=7.27 Aligned_cols=12 Identities=50% Similarity=0.700 Sum_probs=0.0
Q ss_pred EEEEECCCCCCCC
Q ss_conf 0488358854781
Q 005583 286 VKVVHTSRHIYGQ 298 (690)
Q Consensus 286 vki~hTS~~~~GQ 298 (690)
+||+|||. ..||
T Consensus 49 lKiihtSv-waGQ 60 (219)
T d3enba1 49 LKIIHTSV-WAGQ 60 (219)
T ss_dssp EEEECGGG-CCSC
T ss_pred EEEEEEHH-CCCH
T ss_conf 99986012-0555
No 8
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=3.28 E-value=1.2e+02 Score=7.26 Aligned_cols=12 Identities=50% Similarity=0.700 Sum_probs=0.0
Q ss_pred EEEEECCCCCCCC
Q ss_conf 0488358854781
Q 005583 286 VKVVHTSRHIYGQ 298 (690)
Q Consensus 286 vki~hTS~~~~GQ 298 (690)
+||+|||. ..||
T Consensus 57 lKiiHtSv-waGQ 68 (253)
T d3e9oa1 57 LKIIHTSV-WAGQ 68 (253)
T ss_dssp EEEECGGG-GTTC
T ss_pred EEEEEEHH-CCCH
T ss_conf 99986002-0555
No 9
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.08 E-value=1.3e+02 Score=7.05 Aligned_cols=57 Identities=16% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCEEEEEEEEEEE---CCCCCCCCCEEEEEEECCCCCCEEEEEEEEEE
Q ss_conf 6788765308653248999998783---13456999409998851899848999999864
Q 005583 451 AIFSHFVTNLPAFHKVLVFVCVKSV---PVPYVSPEERFLIGRVCPRPYRMYRCIVRYGY 507 (690)
Q Consensus 451 ~~~~h~i~~~~~~h~~~vfv~i~~~---~~P~V~~~eR~~v~~~~~~~~~~yrvv~ryGY 507 (690)
+....+-....-.+++.|+-.=+.+ ...++..+..+.+..+...+-|.|+|.+.+.+
T Consensus 22 p~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 81 (103)
T d1iray2 22 PYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTY 81 (103)
T ss_dssp TTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEE
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCEEEECCCCCCCCCEEEEEEEECC
T ss_conf 785320227998998999988963557873999349999990153033957999999776
No 10
>d1ppaa_ a.133.1.2 (A:) Snake phospholipase A2 {Eastern cottonmouth snake (Agkistrodon piscivorus piscivorus) [TaxId: 8716]}
Probab=3.07 E-value=88 Score=8.07 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=0.0
Q ss_pred ECCEEHEECCHHHH--HCCCCCC
Q ss_conf 01100001221232--2047987
Q 005583 180 LGGLLLCITGTEAM--FADLGHF 200 (690)
Q Consensus 180 LG~v~LciTG~EAL--yADlGHf 200 (690)
||..+.|+||..|+ |.|-|.+
T Consensus 5 f~~MI~~~Tg~~~~~~Y~~YGCy 27 (121)
T d1ppaa_ 5 LGKMILQETGKNAITSYGSYGCN 27 (121)
T ss_dssp HHHHHHHHHCSCHHHHHTTCTTT
T ss_pred HHHHHHHHHCCCHHHHHHHCCCC
T ss_conf 99999876488879999752877
Done!