BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005584
(689 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 62 NGEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKN--KCVGADGAFKLVSEAWTLLSD 119
+G +YY VLG++ SA+ E +KK YRK+A+ HPDKN A+ FKLVSEA+ +LSD
Sbjct: 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD 65
Query: 120 SGKRSSYD 127
S KRS YD
Sbjct: 66 SKKRSLYD 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/64 (51%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKR 123
E YY VLG+KP+A +E +KK YRK+A+ HPDKN G FK +S+A+ +LSD+ KR
Sbjct: 5 ETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEK--FKQISQAYEVLSDAKKR 62
Query: 124 SSYD 127
YD
Sbjct: 63 ELYD 66
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSS 125
DYY LGL A+ E +K+ YR+ A+ HPDKNK GA+ FK ++EA+ +LSD KR
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 126 YD 127
+D
Sbjct: 64 FD 65
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 43/62 (69%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSS 125
DYY+++G+KP+ + + +K YR++A HPD +K A+ FK V+EAW +LSD +R+
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 126 YD 127
YD
Sbjct: 66 YD 67
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/66 (53%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGA--FKLVSEAWTLLSDSG 121
E YY VLG+KP A+ +KK YRKMA+ HPDKN DGA FK +S+A+ +LSD
Sbjct: 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN----PDGAEQFKQISQAYEVLSDEK 62
Query: 122 KRSSYD 127
KR YD
Sbjct: 63 KRQIYD 68
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSS 125
DYY +LG+ A+ E +KK YR++A+ HPDKN GA AFK + A+ +LS+ KR
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 126 YD 127
YD
Sbjct: 68 YD 69
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 67 YYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSY 126
YY +LG+ SA++ +KK + K+A+ HPDKNK A+ F+ ++EA+ LSD+ +R Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 127 DLKRSKQVAPGVVQTNLSS 145
D G Q+ SS
Sbjct: 69 DTLGHSAFTSGKGQSGPSS 87
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 48 VATFEVYFAS---EIKCNGEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGAD 104
+ T +YF S E+K DYY++LG++P+ + + +K YR++A HPD +K A+
Sbjct: 13 LGTENLYFQSNAMELK-----DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAE 67
Query: 105 GAFKLVSEAWTLLSDSGKRSSYDLKRSKQVAPG 137
FK ++EAW +L D +R+ YD + PG
Sbjct: 68 AKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPG 100
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 61 CNGEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKN--KCVGADGAFKLVSEAWTLLS 118
+G +DYY VL + A+ EA+KK YRK+A+ HPDKN A+ FK V+EA+ +LS
Sbjct: 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLS 64
Query: 119 DSGKRSSYD 127
D+ KR YD
Sbjct: 65 DAKKRDIYD 73
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRS 124
DYY +LG+ +A + ++K Y+++A+ HPD+N+ A+ FK + EA+ +L+DS KR+
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 125 SYD 127
+YD
Sbjct: 64 AYD 66
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRS 124
DYY +LG+ +A + ++K Y+++A+ HPD+N+ A+ FK + EA+ +L+DS KR+
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 125 SYD 127
+YD
Sbjct: 64 AYD 66
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKR 123
+ D Y VLG+ +A++ +KK Y+K+A HPDKNK GA+ F +S+A+ +LS+ KR
Sbjct: 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKR 75
Query: 124 SSYD 127
++YD
Sbjct: 76 TNYD 79
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKR 123
E Y +LG+ PSAN++ +KK YRK A+ HPD K G FK +SEA+ +L+D KR
Sbjct: 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPD--KPTGDTEKFKEISEAFEILNDPQKR 64
Query: 124 SSYD 127
YD
Sbjct: 65 EIYD 68
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRS 124
DYY +LG+ +A + ++K Y+++A+ HPD+N+ A+ FK + EA+ +L+DS KR+
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 125 SYD 127
+YD
Sbjct: 64 AYD 66
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLL 117
D + +LG+KP A+++ V K YRK+AVLLHPDK G++ AFK V A T L
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGA-------FKLVSEAWTLLS 118
D+YS+LG PSAN +K++Y+K+ +L HPDK G F + +AW +L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 119 DSGKRSSYDLKRS 131
+ + YDL+RS
Sbjct: 77 NEETKKKYDLQRS 89
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGA-------FKLVSEAWTLLS 118
D+YS+LG PSAN +K++Y+K+ ++ HPDK G F + +AW +L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 119 DSGKRSSYDLKR 130
+ + YDL+R
Sbjct: 71 NEETKREYDLQR 82
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 68 YSVLGLKPSANKEAVKKQYRKMAVLLHPDKN-KCVGADGAFKLVSEAWTLLSDSGKRSSY 126
Y VLGL +A + +KK YRK+A+ HPDKN A FK ++ A +L+D+ KR+ Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 127 DLKRS--KQVAPGVVQTNLSSVYASG 150
D S VA + N+++ + SG
Sbjct: 80 DKYGSLGLYVAEQFGEENVNTYFVSG 105
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 67 YYSVLGLKPSANKEAVKKQYRKMAVLLHPDKN--KCVGADGAFKLVSEAWTLLSDSGKRS 124
YY +L + SA+ + +KK YR+ A+ HPDKN A+ FK V+EA+ +LSD KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
Query: 125 SYD 127
YD
Sbjct: 64 IYD 66
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNK-CVGADGAFKLVSEAWTLLSDSGKRS 124
DYY +LG+ +A+++ +KK Y ++A HPD NK A F ++EA+ +LSD KR
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 125 SYD 127
YD
Sbjct: 68 QYD 70
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKN-KCVGADGAFKLVSEAWTLLSDSGKRS 124
++YS+LG+ +A+ +++ ++K+A+ LHPDKN A G F ++ A+ +L D R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 125 SYD 127
YD
Sbjct: 82 KYD 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKN-KCVGADGAFKLVSEAWTLLSDSGKRS 124
++YS+LG+ +A+ +++ ++K+A+ LHPDKN A G F ++ A+ +L D R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 125 SYD 127
YD
Sbjct: 63 KYD 65
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 22 KDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYFASEIKCNGEIDYYSVLGLKPSANKEA 81
+D+ A+ + + + GLE ++ +K + + DYY +LG+K +A K+
Sbjct: 350 QDYETAQEHNENDQQIREGLEKAQRL-----------LKQSQKRDYYKILGVKRNAKKQE 398
Query: 82 VKKQYRKMAVLLHPD----KNKCVGADGAFKLVSEAWTLLSDSGKRSSYD 127
+ K YRK+A+ HPD + + A+ F ++ A +LSD R +D
Sbjct: 399 IIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 59 IKCNGEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPD----KNKCVGADGAFKLVSEAW 114
+K + + DYY +LG+K +A K+ + K YRK+A+ HPD + + A+ F ++ A
Sbjct: 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAK 435
Query: 115 TLLSDSGKRSSYD 127
+LSD R +D
Sbjct: 436 EVLSDPEMRKKFD 448
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 68 YSVLGLKPSANKEAVKKQYRKMAVLLHPDKNK-CVGADGAFKLVSEAWTLLSDSGKRSSY 126
Y +LG+ +A + +K Y + L HPD+N A F +S+A+ +L + R Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 127 D 127
D
Sbjct: 80 D 80
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 53 VYFASEIKCNGEIDYYSVLGL-KPSANKEAVKKQYRKMAVLLHPD----KNKCVGADGAF 107
V FA E+ C E + Y VL + + +K+ + K YR +A HPD K + + A+ F
Sbjct: 4 VGFAPELYCGLE-NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERF 62
Query: 108 KLVSEAWTLLSDSGKRSSYD 127
++++ A+ L D +++YD
Sbjct: 63 RVIATAYETLKDDEAKTNYD 82
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKN-KCVGADGAFKLVSEAWTLLSDSGKRS 124
DYY++LG ++ E + +++ A+ HPDK+ + A F+ + +A +L++ R+
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 125 SYDLKRSKQVA 135
YD R Q++
Sbjct: 81 RYDHWRRSQMS 91
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
Length = 106
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 8/42 (19%)
Query: 81 AVKKQYRKMAVLLHPDK--------NKCVGADGAFKLVSEAW 114
AV+K Y++ ++LHPDK N+ A+ F+L+ EAW
Sbjct: 56 AVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW 97
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 27 AKNYALKAKMLCPGLEGIAQMVATFEVYFASEIKCNGEIDYYSVLGLKPSANKEAVKKQY 86
AK++A+ AK+ P L ++ +EV F + I+C G Y +L P N + +
Sbjct: 83 AKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGA--YVKLLSKTPELNLDQFHDK- 139
Query: 87 RKMAVLLHPDK 97
++ PDK
Sbjct: 140 TPYTIMFGPDK 150
>pdb|2QIL|A Chain A, Toxic Shock Syndrome Toxin-1 At 2.07 A Resolution
pdb|2QIL|B Chain B, Toxic Shock Syndrome Toxin-1 At 2.07 A Resolution
pdb|2QIL|C Chain C, Toxic Shock Syndrome Toxin-1 At 2.07 A Resolution
pdb|2TSS|A Chain A, Toxic Shock Syndrome Toxin-1 From Staphylococcus Aureus:
Orthorhombicc222(1) Crystal Form
pdb|2TSS|B Chain B, Toxic Shock Syndrome Toxin-1 From Staphylococcus Aureus:
Orthorhombicc222(1) Crystal Form
pdb|2TSS|C Chain C, Toxic Shock Syndrome Toxin-1 From Staphylococcus Aureus:
Orthorhombicc222(1) Crystal Form
pdb|5TSS|A Chain A, Toxic Shock Syndrome Toxin-1: Orthorhombic P222(1) Crystal
Form
pdb|5TSS|B Chain B, Toxic Shock Syndrome Toxin-1: Orthorhombic P222(1) Crystal
Form
pdb|2IJ0|A Chain A, Structural Basis Of T Cell Specificity And Activation By
The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
pdb|2IJ0|B Chain B, Structural Basis Of T Cell Specificity And Activation By
The Bacterial Superantigen Toxic Shock Syndrome Toxin-1
pdb|4TSS|A Chain A, Toxic Shock Syndrome Toxin-1: Tetragonal P4(1)2(1)2
Crystal Form
pdb|3MFG|A Chain A, Crystal Structure Of Toxic Shock Syndrome Toxin 1 (Tsst-1)
In Complex With The Human T Cell Receptor Beta Chain
Vbeta2.1 (Ep-8)
Length = 194
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 340 VEANFRNGSEERGVKSGTEVNFANASTNNEHDPKLSRPIELP--------NRRCSVAPTF 391
V+ N + + + GT ++F + N KL PIELP + P F
Sbjct: 62 VDLNTKRTKKSQHTSEGTYIHFQISGVTNTE--KLPTPIELPLKVKVHGKDSPLKYWPKF 119
Query: 392 DARKLLIEKARTEIRKKLEEIR 413
D ++L I EIR +L +I
Sbjct: 120 DKKQLAISTLDFEIRHQLTQIH 141
>pdb|1TS2|A Chain A, T128a Mutant Of Toxic Shock Syndrome Toxin-1 From S.
Aureus
pdb|1TS2|B Chain B, T128a Mutant Of Toxic Shock Syndrome Toxin-1 From S.
Aureus
pdb|1TS2|C Chain C, T128a Mutant Of Toxic Shock Syndrome Toxin-1 From S.
Aureus
Length = 194
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 340 VEANFRNGSEERGVKSGTEVNFANASTNNEHDPKLSRPIELP--------NRRCSVAPTF 391
V+ N + + + GT ++F + N KL PIELP + P F
Sbjct: 62 VDLNTKRTKKSQHTSEGTYIHFQISGVTNTE--KLPTPIELPLKVKVHGKDSPLKYWPKF 119
Query: 392 DARKLLIEKARTEIRKKLEEIR 413
D ++L I EIR +L +I
Sbjct: 120 DKKQLAISALDFEIRHQLTQIH 141
>pdb|1QIL|A Chain A, Inactive Mutant Toxic Shock Syndrome Toxin-1 At 2.5 A
pdb|1QIL|B Chain B, Inactive Mutant Toxic Shock Syndrome Toxin-1 At 2.5 A
pdb|1QIL|C Chain C, Inactive Mutant Toxic Shock Syndrome Toxin-1 At 2.5 A
pdb|1TS3|A Chain A, H135a Mutant Of Toxic Shock Syndrome Toxin-1 From S.
Aureus
pdb|1TS3|B Chain B, H135a Mutant Of Toxic Shock Syndrome Toxin-1 From S.
Aureus
pdb|1TS3|C Chain C, H135a Mutant Of Toxic Shock Syndrome Toxin-1 From S.
Aureus
Length = 194
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 340 VEANFRNGSEERGVKSGTEVNFANASTNNEHDPKLSRPIELP--------NRRCSVAPTF 391
V+ N + + + GT ++F + N KL PIELP + P F
Sbjct: 62 VDLNTKRTKKSQHTSEGTYIHFQISGVTNTE--KLPTPIELPLKVKVHGKDSPLKYWPKF 119
Query: 392 DARKLLIEKARTEIRKKLEEIR 413
D ++L I EIR +L +I
Sbjct: 120 DKKQLAISTLDFEIRAQLTQIH 141
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLV----SEAWTLLS 118
GE + V G+ E VKK YRK +++HPDK + K++ ++AW+
Sbjct: 48 GETKWKPV-GMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 106
Query: 119 DSGKRSSY 126
+ G++ Y
Sbjct: 107 NQGQKPLY 114
>pdb|1TS4|A Chain A, Q139k Mutant Of Toxic Shock Syndrome Toxin-1 From S.
Aureus
pdb|1TS4|B Chain B, Q139k Mutant Of Toxic Shock Syndrome Toxin-1 From S.
Aureus
Length = 194
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 340 VEANFRNGSEERGVKSGTEVNFANASTNNEHDPKLSRPIELP--------NRRCSVAPTF 391
V+ N + + + GT ++F + N KL PIELP + P F
Sbjct: 62 VDLNTKRTKKSQHTSEGTYIHFQISGVTNTE--KLPTPIELPLKVKVHGKDSPLKYWPKF 119
Query: 392 DARKLLIEKARTEIRKKLEEIR 413
D ++L I EIR +L +I
Sbjct: 120 DKKQLAISTLDFEIRHQLTKIH 141
>pdb|1AW7|A Chain A, Q136a Mutant Of Toxic Shock Syndrome Toxin-1 From S.
Aureus
pdb|1AW7|B Chain B, Q136a Mutant Of Toxic Shock Syndrome Toxin-1 From S.
Aureus
pdb|1AW7|C Chain C, Q136a Mutant Of Toxic Shock Syndrome Toxin-1 From S.
Aureus
pdb|1AW7|D Chain D, Q136a Mutant Of Toxic Shock Syndrome Toxin-1 From S.
Aureus
Length = 194
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 340 VEANFRNGSEERGVKSGTEVNFANASTNNEHDPKLSRPIELP--------NRRCSVAPTF 391
V+ N + + + GT ++F + N KL PIELP + P F
Sbjct: 62 VDLNTKRTKKSQHTSEGTYIHFQISGVTNTE--KLPTPIELPLKVKVHGKDSPLKYWPKF 119
Query: 392 DARKLLIEKARTEIRKKLEEIR 413
D ++L I EIR L +I
Sbjct: 120 DKKQLAISTLDFEIRHALTQIH 141
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 80 EAVKKQYRKMAVLLHPDKNKCVG----ADGAFKLVSEAWTLLSDSGKRSSY 126
E VKK YRK +++HPDK A F +++AW+ + G++ Y
Sbjct: 51 EQVKKVYRKAVLVVHPDKATGQPYEQYAKXIFXELNDAWSEFENQGQKPLY 101
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLV----SEAWTLLS 118
GE + V G+ E VKK YRK +++HPDK + K++ ++AW+
Sbjct: 116 GETKWKPV-GMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 174
Query: 119 DSGKR 123
+ G++
Sbjct: 175 NQGQK 179
>pdb|1IYJ|B Chain B, Structure Of A Brca2-Dss1 Complex
pdb|1IYJ|D Chain D, Structure Of A Brca2-Dss1 Complex
Length = 817
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 18/109 (16%)
Query: 85 QYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVAPGVVQTNLS 144
+Y + A+ H K G F+L W + SD GK + R+ PGV +S
Sbjct: 154 EYFQFAIEDHFGKEALCAGKG-FRLADGGWLIPSDDGKAGKEEFYRALCDTPGVDPKLIS 212
Query: 145 SVYASGVAGFGNCPNSPIPHTRIDTFWTVCTSCKVQYEYLRKYVNKRLS 193
SV+ S H R W V +++ + +++ N+ L+
Sbjct: 213 SVWVSN-------------HYR----WIVWKLAAMEFAFPKEFANRCLN 244
>pdb|2ELB|A Chain A, Crystal Structure Of The Bar-Ph Domain Of Human Appl1
Length = 396
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 405 IRKKLEEIRLAAEAVVENVKLETDSGQSGEASKRADLVVNGNKPKPKTGPITVPDPDFHD 464
+ ++LEE V+NV+ E DS DL V + P+ VPDPD D
Sbjct: 238 LNEQLEEFLANIGTSVQNVRREXDSDIETXQQTIEDLEV-------ASDPLYVPDPDPTD 290
Query: 465 FDKDRS 470
F +R+
Sbjct: 291 FPVNRN 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,443,050
Number of Sequences: 62578
Number of extensions: 935171
Number of successful extensions: 2202
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2158
Number of HSP's gapped (non-prelim): 41
length of query: 689
length of database: 14,973,337
effective HSP length: 105
effective length of query: 584
effective length of database: 8,402,647
effective search space: 4907145848
effective search space used: 4907145848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)