Query 005584
Match_columns 689
No_of_seqs 415 out of 2485
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 01:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11926 DUF3444: Domain of un 100.0 5.3E-84 1.1E-88 650.3 23.0 210 451-661 5-215 (217)
2 COG0484 DnaJ DnaJ-class molecu 99.9 1.5E-23 3.2E-28 225.3 8.0 130 64-202 3-153 (371)
3 KOG0713 Molecular chaperone (D 99.8 6.3E-20 1.4E-24 193.0 5.9 74 63-136 14-88 (336)
4 KOG0712 Molecular chaperone (D 99.8 1.5E-19 3.2E-24 192.2 8.3 73 64-138 3-75 (337)
5 KOG0624 dsRNA-activated protei 99.8 1.6E-18 3.4E-23 182.1 13.3 124 5-132 338-465 (504)
6 PRK14296 chaperone protein Dna 99.8 4E-19 8.8E-24 194.2 8.1 71 64-134 3-73 (372)
7 PRK14288 chaperone protein Dna 99.8 3.7E-19 8.1E-24 194.3 7.2 71 64-134 2-73 (369)
8 PTZ00037 DnaJ_C chaperone prot 99.7 2.5E-18 5.4E-23 190.4 6.5 68 64-134 27-94 (421)
9 PRK14287 chaperone protein Dna 99.7 5E-18 1.1E-22 185.7 8.2 71 64-134 3-73 (371)
10 PRK14276 chaperone protein Dna 99.7 5.8E-18 1.3E-22 185.7 7.6 71 64-134 3-73 (380)
11 PRK14279 chaperone protein Dna 99.7 6.1E-18 1.3E-22 186.2 7.4 68 64-131 8-76 (392)
12 PRK14298 chaperone protein Dna 99.7 6.7E-18 1.5E-22 185.0 7.2 71 64-134 4-74 (377)
13 PRK14286 chaperone protein Dna 99.7 5.6E-18 1.2E-22 185.4 5.9 71 64-134 3-74 (372)
14 PRK14283 chaperone protein Dna 99.7 1.2E-17 2.7E-22 183.0 8.6 71 64-134 4-74 (378)
15 PRK14280 chaperone protein Dna 99.7 1.3E-17 2.8E-22 182.8 7.4 71 64-134 3-73 (376)
16 PRK14278 chaperone protein Dna 99.7 8.5E-18 1.8E-22 184.3 5.9 68 65-132 3-70 (378)
17 PRK14285 chaperone protein Dna 99.7 1.5E-17 3.4E-22 181.4 7.5 70 65-134 3-73 (365)
18 PRK14282 chaperone protein Dna 99.7 2E-17 4.3E-22 180.9 7.3 71 64-134 3-75 (369)
19 PRK14291 chaperone protein Dna 99.7 2.3E-17 5E-22 181.1 7.4 71 64-134 2-72 (382)
20 PRK14301 chaperone protein Dna 99.7 2.2E-17 4.8E-22 180.7 6.3 71 64-134 3-74 (373)
21 PRK14294 chaperone protein Dna 99.7 3.2E-17 6.9E-22 179.1 6.6 71 64-134 3-74 (366)
22 PRK14277 chaperone protein Dna 99.7 3.8E-17 8.2E-22 179.7 7.0 71 64-134 4-75 (386)
23 PRK14284 chaperone protein Dna 99.7 4.3E-17 9.4E-22 179.5 7.3 70 65-134 1-71 (391)
24 PRK14295 chaperone protein Dna 99.7 5.3E-17 1.2E-21 178.6 7.9 71 64-134 8-83 (389)
25 PRK14297 chaperone protein Dna 99.7 6E-17 1.3E-21 177.8 7.2 71 64-134 3-74 (380)
26 PRK10767 chaperone protein Dna 99.7 8.1E-17 1.8E-21 176.2 7.9 71 64-134 3-74 (371)
27 TIGR02349 DnaJ_bact chaperone 99.7 1E-16 2.2E-21 174.5 8.0 69 66-134 1-69 (354)
28 PRK14281 chaperone protein Dna 99.6 1.1E-16 2.3E-21 176.7 6.7 70 65-134 3-73 (397)
29 PRK14292 chaperone protein Dna 99.6 2.8E-16 6.1E-21 172.0 7.8 69 65-133 2-70 (371)
30 PRK14300 chaperone protein Dna 99.6 3.7E-16 7.9E-21 171.1 8.6 70 65-134 3-72 (372)
31 PRK14293 chaperone protein Dna 99.6 3.4E-16 7.3E-21 171.5 6.8 71 64-134 2-72 (374)
32 PRK14299 chaperone protein Dna 99.6 5.7E-16 1.2E-20 164.4 8.2 70 64-133 3-72 (291)
33 PRK14290 chaperone protein Dna 99.6 2.9E-16 6.2E-21 171.6 5.4 70 65-134 3-74 (365)
34 PRK14289 chaperone protein Dna 99.6 6.1E-16 1.3E-20 170.2 6.6 71 64-134 4-75 (386)
35 KOG0715 Molecular chaperone (D 99.6 8.1E-16 1.8E-20 162.7 6.7 70 64-133 42-111 (288)
36 KOG0550 Molecular chaperone (D 99.6 2.3E-15 5.1E-20 161.6 10.2 119 10-133 323-443 (486)
37 PF00226 DnaJ: DnaJ domain; I 99.6 8.6E-16 1.9E-20 126.5 4.6 62 66-127 1-64 (64)
38 KOG0717 Molecular chaperone (D 99.6 8.7E-16 1.9E-20 166.4 4.5 75 63-137 6-82 (508)
39 KOG0716 Molecular chaperone (D 99.6 2.4E-15 5.3E-20 154.2 5.2 72 64-135 30-102 (279)
40 KOG0718 Molecular chaperone (D 99.5 5.6E-15 1.2E-19 160.1 5.7 74 64-137 8-85 (546)
41 KOG0691 Molecular chaperone (D 99.5 5.7E-15 1.2E-19 155.7 5.5 73 64-136 4-77 (296)
42 PTZ00341 Ring-infected erythro 99.5 9.1E-15 2E-19 170.3 7.3 73 63-135 571-643 (1136)
43 PRK10266 curved DNA-binding pr 99.5 8E-15 1.7E-19 156.7 6.3 67 65-131 4-70 (306)
44 KOG0719 Molecular chaperone (D 99.5 2.7E-14 5.9E-19 143.4 4.7 71 63-133 12-85 (264)
45 smart00271 DnaJ DnaJ molecular 99.5 6.7E-14 1.4E-18 113.4 6.0 58 65-122 1-60 (60)
46 cd06257 DnaJ DnaJ domain or J- 99.4 1.6E-13 3.5E-18 109.1 6.1 54 66-119 1-55 (55)
47 KOG0721 Molecular chaperone (D 99.4 9.9E-13 2.1E-17 131.3 8.3 72 63-134 97-169 (230)
48 TIGR03835 termin_org_DnaJ term 99.4 5.2E-13 1.1E-17 152.9 6.7 70 65-134 2-71 (871)
49 COG2214 CbpA DnaJ-class molecu 99.4 7.2E-13 1.6E-17 131.0 6.1 67 64-130 5-73 (237)
50 KOG0720 Molecular chaperone (D 99.4 4.6E-13 9.9E-18 145.6 4.8 129 63-205 233-363 (490)
51 PHA03102 Small T antigen; Revi 99.3 1E-12 2.2E-17 126.7 6.0 66 66-134 6-73 (153)
52 PRK05014 hscB co-chaperone Hsc 99.2 2.3E-11 4.9E-16 119.9 6.9 66 65-130 1-74 (171)
53 PRK01356 hscB co-chaperone Hsc 99.2 3.3E-11 7.1E-16 118.3 5.5 66 65-130 2-73 (166)
54 KOG0722 Molecular chaperone (D 99.1 4.1E-11 8.9E-16 121.8 5.1 69 63-131 31-99 (329)
55 PRK00294 hscB co-chaperone Hsc 99.1 9.5E-11 2E-15 115.7 7.0 69 63-131 2-78 (173)
56 KOG0714 Molecular chaperone (D 99.1 5E-11 1.1E-15 123.6 4.4 68 64-131 2-71 (306)
57 PRK03578 hscB co-chaperone Hsc 99.1 2E-10 4.3E-15 113.7 7.1 68 64-131 5-80 (176)
58 PTZ00100 DnaJ chaperone protei 99.0 3.3E-10 7.1E-15 104.4 5.6 52 64-118 64-115 (116)
59 PHA02624 large T antigen; Prov 98.9 1E-09 2.2E-14 125.1 5.4 61 64-127 10-72 (647)
60 PRK09430 djlA Dna-J like membr 98.9 1.8E-09 4E-14 113.5 6.2 55 65-119 200-262 (267)
61 KOG1150 Predicted molecular ch 98.8 2.9E-09 6.3E-14 105.2 5.6 64 64-127 52-117 (250)
62 PRK01773 hscB co-chaperone Hsc 98.6 4E-08 8.7E-13 97.1 6.6 67 65-131 2-76 (173)
63 COG5407 SEC63 Preprotein trans 98.6 3.5E-08 7.5E-13 107.5 5.9 71 63-133 96-172 (610)
64 TIGR00714 hscB Fe-S protein as 98.6 9.5E-08 2E-12 93.2 6.1 55 77-131 3-63 (157)
65 COG5269 ZUO1 Ribosome-associat 98.4 1.9E-07 4.2E-12 96.1 5.4 69 63-131 41-115 (379)
66 KOG0568 Molecular chaperone (D 97.7 4.3E-05 9.3E-10 77.5 5.5 56 64-119 46-102 (342)
67 KOG1789 Endocytosis protein RM 97.7 3.8E-05 8.3E-10 90.7 5.8 52 65-118 1281-1336(2235)
68 KOG0723 Molecular chaperone (D 97.2 0.00059 1.3E-08 61.9 5.7 48 70-120 61-108 (112)
69 KOG0431 Auxilin-like protein a 96.5 0.0044 9.6E-08 70.2 6.3 69 43-118 373-449 (453)
70 COG1076 DjlA DnaJ-domain-conta 96.1 0.016 3.6E-07 57.5 7.3 54 64-117 112-173 (174)
71 KOG3192 Mitochondrial J-type c 95.5 0.014 3E-07 56.7 3.7 70 62-131 5-82 (168)
72 TIGR02098 MJ0042_CXXC MJ0042 f 92.6 0.09 2E-06 39.0 2.3 33 172-204 3-38 (38)
73 COG1076 DjlA DnaJ-domain-conta 91.2 0.12 2.6E-06 51.3 2.0 66 66-131 2-75 (174)
74 PF07719 TPR_2: Tetratricopept 89.1 1 2.2E-05 31.3 4.9 33 8-40 1-33 (34)
75 PF03656 Pam16: Pam16; InterP 88.5 0.91 2E-05 43.1 5.5 51 68-121 61-111 (127)
76 PF11926 DUF3444: Domain of un 88.2 0.93 2E-05 46.8 5.8 76 475-559 124-210 (217)
77 PF13719 zinc_ribbon_5: zinc-r 87.7 0.41 8.9E-06 35.6 2.2 32 171-202 2-36 (37)
78 PF13428 TPR_14: Tetratricopep 85.8 2.1 4.5E-05 32.4 5.2 40 10-49 3-42 (44)
79 PF00515 TPR_1: Tetratricopept 85.3 2.3 4.9E-05 29.8 4.9 33 8-40 1-33 (34)
80 PF13414 TPR_11: TPR repeat; P 84.0 2.7 5.9E-05 34.0 5.5 45 7-51 2-46 (69)
81 PF13717 zinc_ribbon_4: zinc-r 82.1 0.93 2E-05 33.6 1.8 30 172-201 3-35 (36)
82 KOG0624 dsRNA-activated protei 79.2 12 0.00026 41.4 9.6 111 4-116 34-158 (504)
83 PRK00398 rpoP DNA-directed RNA 77.8 2.8 6E-05 32.5 3.3 32 172-205 4-35 (46)
84 PF14863 Alkyl_sulf_dimr: Alky 70.8 7.8 0.00017 37.5 5.2 61 8-68 70-130 (141)
85 PF14205 Cys_rich_KTR: Cystein 69.8 4.5 9.7E-05 32.9 2.7 34 169-202 2-39 (55)
86 PF13181 TPR_8: Tetratricopept 69.2 9.8 0.00021 26.4 4.2 32 8-39 1-32 (34)
87 KOG4234 TPR repeat-containing 68.7 11 0.00023 39.0 5.8 40 4-43 91-130 (271)
88 PF14853 Fis1_TPR_C: Fis1 C-te 68.7 20 0.00044 28.9 6.3 45 11-55 4-48 (53)
89 PF13414 TPR_11: TPR repeat; P 68.0 4.5 9.8E-05 32.7 2.5 37 3-39 32-69 (69)
90 PF13432 TPR_16: Tetratricopep 67.9 13 0.00028 29.7 5.3 41 13-53 2-42 (65)
91 smart00834 CxxC_CXXC_SSSS Puta 67.2 7.7 0.00017 28.7 3.5 31 169-199 3-34 (41)
92 PF13174 TPR_6: Tetratricopept 66.1 12 0.00027 25.4 4.2 31 10-40 2-32 (33)
93 PF05207 zf-CSL: CSL zinc fing 65.9 4.4 9.6E-05 32.9 2.0 32 167-199 14-48 (55)
94 KOG0724 Zuotin and related mol 65.5 6.2 0.00013 43.0 3.7 54 77-130 4-62 (335)
95 PRK00464 nrdR transcriptional 64.8 3.9 8.5E-05 40.1 1.8 36 173-208 2-45 (154)
96 PF09723 Zn-ribbon_8: Zinc rib 64.3 10 0.00022 29.0 3.6 31 169-199 3-34 (42)
97 PF13371 TPR_9: Tetratricopept 64.1 13 0.00027 30.3 4.6 31 15-45 2-32 (73)
98 PLN03088 SGT1, suppressor of 63.3 61 0.0013 35.7 11.0 42 9-50 3-44 (356)
99 PF14559 TPR_19: Tetratricopep 62.2 11 0.00024 30.2 3.8 32 19-50 2-33 (68)
100 TIGR01206 lysW lysine biosynth 60.9 10 0.00022 30.8 3.3 36 173-208 4-39 (54)
101 PF13446 RPT: A repeated domai 60.6 17 0.00038 29.7 4.7 26 66-91 6-31 (62)
102 COG3063 PilF Tfp pilus assembl 56.8 83 0.0018 33.2 9.8 72 5-98 31-103 (250)
103 COG3097 Uncharacterized protei 56.3 15 0.00032 33.2 3.7 38 467-507 26-63 (106)
104 PRK05685 fliS flagellar protei 55.1 40 0.00087 32.0 6.8 36 6-41 33-68 (132)
105 PF13432 TPR_16: Tetratricopep 55.0 27 0.00058 27.8 4.9 36 6-41 29-64 (65)
106 smart00531 TFIIE Transcription 54.0 7.2 0.00016 37.7 1.6 37 170-206 98-138 (147)
107 TIGR02605 CxxC_CxxC_SSSS putat 53.9 17 0.00037 28.5 3.5 31 169-199 3-34 (52)
108 PF03704 BTAD: Bacterial trans 53.8 89 0.0019 29.1 9.0 43 10-52 64-106 (146)
109 PRK11827 hypothetical protein; 52.7 9.7 0.00021 31.7 1.9 29 172-202 9-37 (60)
110 PF13453 zf-TFIIB: Transcripti 52.3 11 0.00023 28.6 1.9 30 174-203 2-31 (41)
111 KOG0553 TPR repeat-containing 52.2 53 0.0012 35.7 7.8 39 4-42 77-115 (304)
112 PF14369 zf-RING_3: zinc-finge 52.1 15 0.00032 27.2 2.6 28 174-202 5-32 (35)
113 PF10263 SprT-like: SprT-like 52.0 14 0.00031 35.3 3.3 37 168-204 120-156 (157)
114 smart00028 TPR Tetratricopepti 51.4 28 0.0006 21.8 3.7 31 10-40 3-33 (34)
115 PF14559 TPR_19: Tetratricopep 51.1 30 0.00065 27.6 4.6 43 8-50 25-67 (68)
116 PRK06266 transcription initiat 50.5 7.9 0.00017 38.8 1.3 34 171-205 117-150 (178)
117 PF10475 DUF2450: Protein of u 47.5 76 0.0017 34.0 8.3 86 9-120 128-213 (291)
118 KOG0714 Molecular chaperone (D 47.1 7.4 0.00016 40.2 0.5 115 5-132 2-153 (306)
119 PRK10370 formate-dependent nit 46.7 1.1E+02 0.0025 30.7 9.0 45 6-50 71-115 (198)
120 TIGR00373 conserved hypothetic 46.0 9.5 0.00021 37.5 1.0 34 171-205 109-142 (158)
121 PF13371 TPR_9: Tetratricopept 45.2 28 0.00061 28.2 3.6 46 4-49 25-70 (73)
122 PF13176 TPR_7: Tetratricopept 44.9 44 0.00094 24.1 4.2 28 11-38 2-29 (36)
123 PF07219 HemY_N: HemY protein 44.8 72 0.0016 29.1 6.6 45 5-50 56-100 (108)
124 KOG0543 FKBP-type peptidyl-pro 44.0 42 0.00091 37.8 5.7 41 10-50 293-333 (397)
125 PRK10866 outer membrane biogen 42.6 1.8E+02 0.004 30.3 10.0 37 8-44 32-68 (243)
126 cd04708 BAH_plantDCM_II BAH, o 41.4 45 0.00096 34.3 5.0 51 455-512 13-71 (202)
127 COG2835 Uncharacterized conser 40.8 21 0.00045 29.7 2.1 30 172-203 9-38 (60)
128 PLN03088 SGT1, suppressor of 40.2 59 0.0013 35.8 6.2 82 7-90 35-118 (356)
129 COG5216 Uncharacterized conser 40.0 24 0.00051 29.3 2.2 33 166-199 17-52 (67)
130 TIGR02552 LcrH_SycD type III s 39.1 1.2E+02 0.0027 27.3 7.3 46 4-49 13-58 (135)
131 KOG2923 Uncharacterized conser 38.8 15 0.00032 30.9 0.9 33 166-199 17-52 (67)
132 smart00731 SprT SprT homologue 37.7 30 0.00065 33.2 3.0 36 168-203 109-145 (146)
133 PF05191 ADK_lid: Adenylate ki 37.2 18 0.00039 26.9 1.1 30 173-202 3-32 (36)
134 PF14561 TPR_20: Tetratricopep 37.1 2E+02 0.0044 25.4 8.0 38 4-41 18-55 (90)
135 PF13374 TPR_10: Tetratricopep 36.3 80 0.0017 22.3 4.5 34 8-41 2-35 (42)
136 PRK15359 type III secretion sy 35.9 80 0.0017 29.9 5.6 45 6-50 56-100 (144)
137 PRK15174 Vi polysaccharide exp 35.9 1.5E+02 0.0032 35.6 9.1 111 11-123 287-410 (656)
138 KOG3824 Huntingtin interacting 35.6 1.2E+02 0.0026 33.4 7.3 75 3-80 111-186 (472)
139 smart00659 RPOLCX RNA polymera 34.6 66 0.0014 25.0 3.9 33 171-206 2-34 (44)
140 COG1645 Uncharacterized Zn-fin 34.5 34 0.00074 32.8 2.7 33 171-208 28-61 (131)
141 PF11833 DUF3353: Protein of u 34.3 79 0.0017 32.3 5.5 38 74-118 1-38 (194)
142 KOG2002 TPR-containing nuclear 33.7 60 0.0013 40.3 5.2 36 6-41 162-197 (1018)
143 PF09538 FYDLN_acid: Protein o 33.4 19 0.00041 33.4 0.9 17 190-206 8-24 (108)
144 PF08271 TF_Zn_Ribbon: TFIIB z 33.3 35 0.00075 26.0 2.1 25 173-198 2-26 (43)
145 COG1379 PHP family phosphoeste 33.2 9.3 0.0002 41.7 -1.3 34 167-201 242-275 (403)
146 TIGR03504 FimV_Cterm FimV C-te 32.7 67 0.0014 25.0 3.6 25 12-36 3-27 (44)
147 PF13525 YfiO: Outer membrane 31.6 4.6E+02 0.0099 26.2 10.6 35 7-41 4-38 (203)
148 PTZ00043 cytochrome c oxidase 31.4 3.1E+02 0.0067 28.9 9.1 38 79-118 95-132 (268)
149 TIGR02159 PA_CoA_Oxy4 phenylac 31.3 16 0.00035 35.5 0.0 34 172-205 106-144 (146)
150 COG5552 Uncharacterized conser 31.3 76 0.0017 27.6 4.0 46 65-110 3-48 (88)
151 PF04505 Dispanin: Interferon- 31.1 51 0.0011 28.9 3.1 25 14-38 43-67 (82)
152 COG1996 RPC10 DNA-directed RNA 30.8 72 0.0016 25.6 3.5 36 169-206 4-39 (49)
153 COG5637 Predicted integral mem 30.3 8 0.00017 38.9 -2.2 25 476-500 82-106 (217)
154 cd00189 TPR Tetratricopeptide 30.2 1.9E+02 0.0042 22.2 6.3 32 11-42 3-34 (100)
155 PRK05654 acetyl-CoA carboxylas 29.2 19 0.00041 39.0 0.1 35 167-202 23-57 (292)
156 CHL00174 accD acetyl-CoA carbo 29.1 19 0.00042 39.0 0.2 36 166-202 33-68 (296)
157 PF14687 DUF4460: Domain of un 29.1 99 0.0021 28.8 4.8 45 76-120 5-54 (112)
158 TIGR00515 accD acetyl-CoA carb 28.3 21 0.00045 38.5 0.3 35 167-202 22-56 (285)
159 TIGR02795 tol_pal_ybgF tol-pal 27.6 3.9E+02 0.0085 22.9 10.6 34 8-41 2-35 (119)
160 COG0777 AccD Acetyl-CoA carbox 27.5 30 0.00065 37.1 1.2 34 167-201 24-57 (294)
161 KOG0543 FKBP-type peptidyl-pro 27.1 1.1E+02 0.0024 34.6 5.5 78 12-93 261-338 (397)
162 PF08274 PhnA_Zn_Ribbon: PhnA 27.0 39 0.00085 24.3 1.4 24 173-199 4-27 (30)
163 smart00439 BAH Bromo adjacent 26.3 1.6E+02 0.0035 26.4 5.7 41 474-514 2-45 (120)
164 PF14346 DUF4398: Domain of un 26.1 1.2E+02 0.0027 27.1 4.8 32 6-37 43-74 (103)
165 COG4235 Cytochrome c biogenesi 25.8 2.1E+02 0.0046 31.0 7.2 52 5-56 153-204 (287)
166 PF03966 Trm112p: Trm112p-like 25.7 30 0.00066 29.0 0.7 18 186-203 48-65 (68)
167 PF13512 TPR_18: Tetratricopep 25.4 2.2E+02 0.0047 27.8 6.6 33 8-40 10-42 (142)
168 PF11817 Foie-gras_1: Foie gra 24.9 1.4E+02 0.0031 31.1 5.7 37 4-40 174-210 (247)
169 TIGR02552 LcrH_SycD type III s 24.8 2.3E+02 0.0049 25.5 6.5 44 7-50 50-93 (135)
170 PRK10220 hypothetical protein; 24.7 45 0.00098 31.0 1.7 30 173-205 5-34 (111)
171 KOG0547 Translocase of outer m 24.1 1.2E+02 0.0025 35.4 5.1 49 6-54 113-161 (606)
172 PF14353 CpXC: CpXC protein 23.6 68 0.0015 29.9 2.8 30 173-202 3-49 (128)
173 KOG0548 Molecular co-chaperone 23.5 2.5E+02 0.0055 32.9 7.7 39 6-44 356-394 (539)
174 COG1096 Predicted RNA-binding 23.3 59 0.0013 33.0 2.4 28 168-199 146-173 (188)
175 PF07721 TPR_4: Tetratricopept 23.2 97 0.0021 20.7 2.7 23 10-32 3-25 (26)
176 TIGR00208 fliS flagellar biosy 22.9 1.1E+02 0.0023 28.9 3.9 36 6-41 29-64 (124)
177 PF04733 Coatomer_E: Coatomer 22.8 2.3E+02 0.0049 30.5 6.9 69 9-98 202-270 (290)
178 PRK10866 outer membrane biogen 22.5 8.9E+02 0.019 25.2 12.1 32 12-43 73-104 (243)
179 TIGR02300 FYDLN_acid conserved 22.5 43 0.00093 32.0 1.1 16 190-205 8-23 (129)
180 TIGR00686 phnA alkylphosphonat 22.4 57 0.0012 30.3 1.9 28 173-203 4-31 (109)
181 cd04370 BAH BAH, or Bromo Adja 22.3 1.7E+02 0.0036 26.1 5.0 41 474-514 4-48 (123)
182 PRK11189 lipoprotein NlpI; Pro 22.1 1.7E+02 0.0037 31.1 5.8 32 12-43 102-133 (296)
183 PF13525 YfiO: Outer membrane 21.7 1.5E+02 0.0031 29.8 4.9 97 9-119 43-142 (203)
184 COG1516 FliS Flagellin-specifi 21.6 1E+02 0.0023 29.6 3.6 36 6-41 29-64 (132)
185 TIGR03302 OM_YfiO outer membra 21.4 1.4E+02 0.003 30.0 4.7 31 12-42 170-200 (235)
186 PF15469 Sec5: Exocyst complex 21.4 3E+02 0.0065 27.1 7.0 77 15-98 93-173 (182)
187 PF13424 TPR_12: Tetratricopep 21.2 2E+02 0.0044 23.5 4.9 32 7-38 4-35 (78)
188 PRK02603 photosystem I assembl 21.1 3.1E+02 0.0067 26.4 6.9 35 6-40 33-67 (172)
189 COG5010 TadD Flp pilus assembl 21.0 1.5E+02 0.0032 31.7 4.8 39 11-49 103-141 (257)
190 PF08996 zf-DNA_Pol: DNA Polym 20.9 77 0.0017 31.9 2.7 34 166-199 13-53 (188)
191 PRK05978 hypothetical protein; 20.9 45 0.00098 32.7 1.0 38 168-206 30-67 (148)
192 PRK15359 type III secretion sy 20.5 2E+02 0.0043 27.2 5.3 35 11-45 27-61 (144)
193 PRK10803 tol-pal system protei 20.4 8.5E+02 0.018 25.8 10.5 34 8-41 142-176 (263)
194 PF09297 zf-NADH-PPase: NADH p 20.4 77 0.0017 22.6 1.8 27 173-201 5-31 (32)
195 TIGR00990 3a0801s09 mitochondr 20.2 2.2E+02 0.0047 33.6 6.6 34 7-40 126-159 (615)
196 PF12895 Apc3: Anaphase-promot 20.1 1.6E+02 0.0034 24.7 4.1 43 7-50 24-66 (84)
197 PRK04351 hypothetical protein; 20.0 1.2E+02 0.0027 29.6 3.8 37 168-204 109-145 (149)
No 1
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain. This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
Probab=100.00 E-value=5.3e-84 Score=650.26 Aligned_cols=210 Identities=48% Similarity=0.905 Sum_probs=202.9
Q ss_pred CCCCeecCCCCCCCCCCccCccCCCCCCEEEeecCCCCCCcceeEEEEEeecCCcEEEEEecccCCCCccCccccccCCc
Q 005584 451 KTGPITVPDPDFHDFDKDRSEECFKPKQIWAIYDEDDGMPRLYCLIRQIISIKPFKILITYLSSKTDSEFGSVNWVDSGF 530 (689)
Q Consensus 451 ~~~~~~~pd~df~dFd~~R~~~~F~~gQiWA~Yd~~D~mPr~Ya~I~kv~~~~~f~l~i~wLe~~~~~e~~~~~W~~~~~ 530 (689)
.+..|+||||||||||++|++++|++||||||||+.|||||+||||+||++.+||+|||+|||+++++++ +++|++++|
T Consensus 5 ~~~~~~~pd~dF~dF~~~R~~~~F~~gQIWAlYd~~D~mPR~Ya~I~kV~~~~~Fkl~i~wLe~~~~~e~-~~~w~~~~~ 83 (217)
T PF11926_consen 5 SPSSIDVPDPDFYDFDKDRSEEKFQVGQIWALYDDDDGMPRYYARIKKVDSSNPFKLHITWLEPCPDSEE-EIRWEDEGL 83 (217)
T ss_pred CCCcccCCCcccccccCCchHHhCCCCCEEEEeeCCCCCeeeEEEEEEEecCCCeEEEEEEccccCCccc-ceeeeecCC
Confidence 4567999999999999999999999999999999999999999999999987799999999999999885 899999999
Q ss_pred eeeeeeEEecceeeeecccceEEEeeeeEecCCceEEEeCCcCcEEEEecCCCCCCCCCCCCCCcceeeEEEEecCCCCC
Q 005584 531 TKSCGHFRAYNSDVVDQVNIFSHLLRGEKAGRGGCVRIFPKSGEIWAVYRNWSTDWNRLTPDDVRHRYEMVEVLDDYSED 610 (689)
Q Consensus 531 p~~CG~F~~~~~~~~~~~~~FSH~v~~~~~~~~~~~~IyPrkGevWAlyk~W~~~w~~~~~~~~~~~y~~VEvl~d~~~~ 610 (689)
||+||+|+++++.+++++++|||+|.+++.+.++.|+|||||||||||||||+++|+.+++++..|+|||||||+||+++
T Consensus 84 pvsCG~Fk~~~~~~~~~~~~FSH~v~~~~~~~~~~y~IyPrkGEvWAlYknW~~~w~~~~~~~~~~~YdiVEVl~d~~~~ 163 (217)
T PF11926_consen 84 PVSCGTFKVGKTEEIDDPNMFSHQVVPWTSGKRNEYEIYPRKGEVWALYKNWSPDWSSSTDDERKYEYDIVEVLSDYSEE 163 (217)
T ss_pred ceEEEEEEeCCEEEeccCCcEEEEEEEeecCCCceEEEeCCcccEeEEecCCCCCCCcCcCcCcccceEEEEEeecCCcc
Confidence 99999999999999999999999998799999999999999999999999999999999899999999999999999999
Q ss_pred CceEEEEeeeecCceeeeeecCCCC-ceEEecCCCccceeccccCccccccc
Q 005584 611 LGVCVTPLIKLAGFKTVYQADTDKS-AIRWIPRREMLRFSHQVPSRLLKGEA 661 (689)
Q Consensus 611 ~gv~v~~L~kv~Gf~svF~~~~~~~-~~~~Ip~~e~~rFSHqiP~~~ltg~e 661 (689)
.||.|+||+||+||+|||+|....+ .++.||++||+|||||||||||||+|
T Consensus 164 ~gi~V~~L~Kv~Gf~svF~~~~~~~~~~~~Ip~~E~~RFSHqIPa~rltgee 215 (217)
T PF11926_consen 164 AGIKVAPLVKVKGFKSVFKRAEEGGEAVFTIPKSELLRFSHQIPAFRLTGEE 215 (217)
T ss_pred CcEEEEEEEEecCcEeeeeecCCCCcceEEEChHHcCeeeccCCCEEccCcc
Confidence 9999999999999999999998877 67999999999999999999999998
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-23 Score=225.31 Aligned_cols=130 Identities=30% Similarity=0.464 Sum_probs=96.9
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHHHHhcCCcchhhhccccccccCCCCcccC
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNK-CVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVAPGVVQTN 142 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~-~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (689)
.+|||+||||+++|+.+||||||||||++||||+|+ .+.|+++|++|++||+|||||+||+.||+++..+....+....
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~ 82 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGF 82 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCC
Confidence 579999999999999999999999999999999999 7899999999999999999999999999999887752221111
Q ss_pred CCCCcCCCCCC-----CCCCC-CC-----CC--CC-------CCcceEEEEeccccceeeeeeeecCceeeCCCCCCceE
Q 005584 143 LSSVYASGVAG-----FGNCP-NS-----PI--PH-------TRIDTFWTVCTSCKVQYEYLRKYVNKRLSCKNCRGTFI 202 (689)
Q Consensus 143 ~~~~~~~~~~g-----f~~~~-~~-----~~--~~-------~~~~tFwt~C~~C~~~yey~r~yln~~l~C~~C~g~F~ 202 (689)
...++++ |..+. .. +. +. ....+|..+-.+|.....| .....|..|+|...
T Consensus 83 ----g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~-----~~~~~C~~C~GsGa 153 (371)
T COG0484 83 ----GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRV-----TRSVTCSTCHGSGA 153 (371)
T ss_pred ----CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEec-----ceeeECCcCCCCCC
Confidence 0111110 11111 00 00 00 2346777778888888887 66678888888744
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.3e-20 Score=193.02 Aligned_cols=74 Identities=36% Similarity=0.609 Sum_probs=69.8
Q ss_pred CCcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhccccccccCC
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVAP 136 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~~~ 136 (689)
..+|||+||||+++|+..|||+|||||||+||||||+. |.|.+.|+.|+.||+|||||++|+.||..|+.++..
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~ 88 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD 88 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence 47899999999999999999999999999999999976 789999999999999999999999999999877763
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-19 Score=192.21 Aligned_cols=73 Identities=41% Similarity=0.660 Sum_probs=68.2
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhccccccccCCCC
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVAPGV 138 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~ 138 (689)
...||.||||+++|+++|||||||+||++||||||+. +.++|++|+.||+|||||+||..||++++.+.+.+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~ 75 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG 75 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC
Confidence 5689999999999999999999999999999999975 899999999999999999999999999988875543
No 5
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.77 E-value=1.6e-18 Score=182.07 Aligned_cols=124 Identities=27% Similarity=0.301 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhhhhccCCcCchhhccCCCCCCHHHHHH
Q 005584 5 IEEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYFASEIKCNGEIDYYSVLGLKPSANKEAVKK 84 (689)
Q Consensus 5 ~~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~aa~~~~~~~~D~Y~ILgv~~~a~~~eIKk 84 (689)
.+++.-++++||++|...+|+.|+..+++|+.+.++...++.-+..+..+. +..+.+|||+||||.++|+..||.|
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlk----kqs~kRDYYKILGVkRnAsKqEI~K 413 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLK----KQSGKRDYYKILGVKRNASKQEITK 413 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH----HHhccchHHHHhhhcccccHHHHHH
Confidence 477899999999999999999999999999999999988888888776655 6678899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCC----ChHHHHHHHHHHHHHhcCCcchhhhcccccc
Q 005584 85 QYRKMAVLLHPDKNKCV----GADGAFKLVSEAWTLLSDSGKRSSYDLKRSK 132 (689)
Q Consensus 85 aYRkLal~~HPDK~~~~----~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~ 132 (689)
||||||++||||-.... .|+.+|..|..|-+||+||++|+.||...+.
T Consensus 414 AYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDP 465 (504)
T KOG0624|consen 414 AYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDP 465 (504)
T ss_pred HHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCC
Confidence 99999999999987653 4899999999999999999999999988654
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4e-19 Score=194.23 Aligned_cols=71 Identities=35% Similarity=0.553 Sum_probs=67.0
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+||+||+||+.||+++..+.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 46999999999999999999999999999999999888899999999999999999999999999887543
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.7e-19 Score=194.33 Aligned_cols=71 Identities=42% Similarity=0.713 Sum_probs=66.0
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCC-CCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNK-CVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~-~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.+|||+|||+||++||||+|+ .+.|+++|++|++||+||+||++|+.||+++..+.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 369999999999999999999999999999999997 46689999999999999999999999999987543
No 8
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.73 E-value=2.5e-18 Score=190.35 Aligned_cols=68 Identities=37% Similarity=0.562 Sum_probs=63.3
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||||+ ..++|++|++||+||+||.||+.||+++..+.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~---~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~ 94 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG---DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGL 94 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc---hHHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence 579999999999999999999999999999999985 36899999999999999999999999887544
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5e-18 Score=185.68 Aligned_cols=71 Identities=44% Similarity=0.638 Sum_probs=66.7
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||++|+||.+|+.||+++..+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~ 73 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP 73 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence 36999999999999999999999999999999999877899999999999999999999999999987544
No 10
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=5.8e-18 Score=185.70 Aligned_cols=71 Identities=39% Similarity=0.643 Sum_probs=67.2
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||++|+||.+|+.||+++..+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~ 73 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA 73 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence 46999999999999999999999999999999999888899999999999999999999999999987654
No 11
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=6.1e-18 Score=186.19 Aligned_cols=68 Identities=49% Similarity=0.706 Sum_probs=64.2
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRS 131 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~ 131 (689)
..|||+||||+++|+.++||+|||+||++||||+++. +.|+++|++|++||+||+||+||+.||+++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence 4799999999999999999999999999999999974 5789999999999999999999999999875
No 12
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=6.7e-18 Score=184.98 Aligned_cols=71 Identities=46% Similarity=0.709 Sum_probs=66.9
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+++.+.|+++|++|++||++|+||.+|+.||+++..+.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI 74 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence 46999999999999999999999999999999999878899999999999999999999999999986543
No 13
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=5.6e-18 Score=185.36 Aligned_cols=71 Identities=44% Similarity=0.693 Sum_probs=66.0
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+|+. +.|+++|++|++||+||+||.+|+.||+++..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 4699999999999999999999999999999999974 5789999999999999999999999999887544
No 14
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.2e-17 Score=183.03 Aligned_cols=71 Identities=44% Similarity=0.682 Sum_probs=67.1
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.+|||+|||+||++||||+|+.+.|+++|+.|++||++|+|+.+|+.||+++..+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 57999999999999999999999999999999999878899999999999999999999999999886543
No 15
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.3e-17 Score=182.77 Aligned_cols=71 Identities=48% Similarity=0.701 Sum_probs=67.1
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+++.+.|+++|++|++||++|+||.+|+.||+++..+.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 73 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGP 73 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcccc
Confidence 36999999999999999999999999999999999888899999999999999999999999999987654
No 16
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=8.5e-18 Score=184.27 Aligned_cols=68 Identities=41% Similarity=0.599 Sum_probs=65.0
Q ss_pred cCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccc
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSK 132 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~ 132 (689)
.|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||+||+||.+|..||+++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 69999999999999999999999999999999998777899999999999999999999999998764
No 17
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.5e-17 Score=181.44 Aligned_cols=70 Identities=44% Similarity=0.705 Sum_probs=65.3
Q ss_pred cCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
.|||+||||+++|+.++||+|||+||++||||+++. +.|+++|++|++||+||+||.+|..||+++..+.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 699999999999999999999999999999999874 5688999999999999999999999999887644
No 18
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2e-17 Score=180.91 Aligned_cols=71 Identities=34% Similarity=0.576 Sum_probs=65.4
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC--VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~--~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+|+. ..|++.|++|++||++|+||.+|+.||+++..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 4699999999999999999999999999999999864 4688999999999999999999999999886543
No 19
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.3e-17 Score=181.09 Aligned_cols=71 Identities=41% Similarity=0.638 Sum_probs=67.0
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+|+.+.|+++|++|++||++|+||.+|+.||+++..+.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 46999999999999999999999999999999999888899999999999999999999999999887543
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=2.2e-17 Score=180.72 Aligned_cols=71 Identities=41% Similarity=0.661 Sum_probs=65.7
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+++. +.|+++|++|++||+||+||.+|+.||+++..+.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 4699999999999999999999999999999999974 5688999999999999999999999999887544
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.2e-17 Score=179.11 Aligned_cols=71 Identities=41% Similarity=0.668 Sum_probs=66.1
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+++. +.|++.|+.|++||+||+||.+|+.||+++..++
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 4699999999999999999999999999999999974 5789999999999999999999999999987654
No 22
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.8e-17 Score=179.66 Aligned_cols=71 Identities=39% Similarity=0.645 Sum_probs=65.9
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+++. +.|+++|++|++||+||+||.+|..||+++..+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 4699999999999999999999999999999999974 5688999999999999999999999999887554
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=4.3e-17 Score=179.48 Aligned_cols=70 Identities=49% Similarity=0.739 Sum_probs=65.1
Q ss_pred cCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
.|||+||||+++|+.++||+|||+||++||||+++. +.|+++|++|++||++|+|+.+|+.||+++..+.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 489999999999999999999999999999999974 5689999999999999999999999999987543
No 24
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=5.3e-17 Score=178.59 Aligned_cols=71 Identities=45% Similarity=0.654 Sum_probs=65.0
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhcc----cccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDL----KRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~----~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+++. +.|+++|++|++||+||+||.+|+.||+ ++..+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 4699999999999999999999999999999999974 4689999999999999999999999998 665443
No 25
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=6e-17 Score=177.77 Aligned_cols=71 Identities=42% Similarity=0.704 Sum_probs=65.9
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+++. +.|+++|++|++||++|+||.+|+.||+++..++
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 3699999999999999999999999999999999974 5689999999999999999999999999987654
No 26
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=8.1e-17 Score=176.20 Aligned_cols=71 Identities=41% Similarity=0.684 Sum_probs=65.6
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+||++||||+++. +.|+++|++|++||++|+|+.+|..||+++..+.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 4699999999999999999999999999999999974 5688999999999999999999999999887544
No 27
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.66 E-value=1e-16 Score=174.46 Aligned_cols=69 Identities=43% Similarity=0.699 Sum_probs=65.4
Q ss_pred CchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 66 D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
|||+||||+++|+.++||+|||+||+++|||+++.+.++++|++|++||++|+|+.+|..||+++..+.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 799999999999999999999999999999999877789999999999999999999999999887654
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.1e-16 Score=176.73 Aligned_cols=70 Identities=47% Similarity=0.698 Sum_probs=65.2
Q ss_pred cCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
.|||+||||+++|+.++||+|||+||++||||+++. ..|++.|++|++||++|+||.+|+.||+++..+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 699999999999999999999999999999999974 5688999999999999999999999999887544
No 29
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=2.8e-16 Score=171.98 Aligned_cols=69 Identities=41% Similarity=0.722 Sum_probs=65.8
Q ss_pred cCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhccccccc
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQ 133 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (689)
.|||+||||+++|+.++||+|||+||+++|||++..+.|+++|++|++||++|+||.+|+.||+++..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 599999999999999999999999999999999987789999999999999999999999999988654
No 30
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.7e-16 Score=171.12 Aligned_cols=70 Identities=34% Similarity=0.592 Sum_probs=66.1
Q ss_pred cCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
.|||+||||+++|+.++||+|||+||++||||+++...++++|++|++||++|+|+.+|+.||+++..+.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 6999999999999999999999999999999999877899999999999999999999999999886543
No 31
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.4e-16 Score=171.52 Aligned_cols=71 Identities=39% Similarity=0.677 Sum_probs=66.8
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.++||+|||+|++++|||+++.+.++++|++|++||++|+||.+|+.||.++..+.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 36999999999999999999999999999999999888899999999999999999999999999886543
No 32
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=5.7e-16 Score=164.39 Aligned_cols=70 Identities=41% Similarity=0.690 Sum_probs=66.3
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQ 133 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (689)
..|||+||||+++|+.++||+|||+||+++|||+++.+.++++|++|++||++|+||.+|..||+++..+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 3699999999999999999999999999999999987889999999999999999999999999988653
No 33
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=2.9e-16 Score=171.59 Aligned_cols=70 Identities=39% Similarity=0.632 Sum_probs=65.0
Q ss_pred cCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCV--GADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~--~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
.|||+||||+++|+.++||+|||+||+++|||+++.. .|++.|++|++||++|+|+.+|..||+++..+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 5999999999999999999999999999999999753 588999999999999999999999999887543
No 34
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=6.1e-16 Score=170.16 Aligned_cols=71 Identities=45% Similarity=0.666 Sum_probs=65.7
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
..|||+||||+++|+.+|||+|||+||++||||+++. +.|+++|++|++||++|+||.+|+.||+++..+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 4699999999999999999999999999999999974 4689999999999999999999999999886543
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.1e-16 Score=162.74 Aligned_cols=70 Identities=43% Similarity=0.633 Sum_probs=67.1
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhccccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQ 133 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (689)
..|||+||||+++|+..|||+||++||+++|||.|...+|.+.|+.|.+||++|+|++||..||..+..+
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 3499999999999999999999999999999999999999999999999999999999999999998765
No 36
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.3e-15 Score=161.63 Aligned_cols=119 Identities=30% Similarity=0.405 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhhhhccCCcCchhhccCCCCCCHHHHHHHHHHH
Q 005584 10 RAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYFASEIKCNGEIDYYSVLGLKPSANKEAVKKQYRKM 89 (689)
Q Consensus 10 r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~aa~~~~~~~~D~Y~ILgv~~~a~~~eIKkaYRkL 89 (689)
.++.+|+.++..++|.+|.+++.+|.++..+ ..+.++|..+.+-+ +.++..|||.|||+.+++++.+||++||++
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aL----kkSkRkd~ykilGi~~~as~~eikkayrk~ 397 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLAL----KKSKRKDWYKILGISRNASDDEIKKAYRKL 397 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHH----HHhhhhhHHHHhhhhhhcccchhhhHHHHH
Confidence 4677899999999999999999999999988 55888888777665 556688999999999999999999999999
Q ss_pred HHHhCCCCCCC--CChHHHHHHHHHHHHHhcCCcchhhhccccccc
Q 005584 90 AVLLHPDKNKC--VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQ 133 (689)
Q Consensus 90 al~~HPDK~~~--~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (689)
+|.+|||++.. ..++..|++|.+||.+|+||.+|..||......
T Consensus 398 AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle 443 (486)
T KOG0550|consen 398 ALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLE 443 (486)
T ss_pred HHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchh
Confidence 99999999865 468999999999999999999999999876543
No 37
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.59 E-value=8.6e-16 Score=126.47 Aligned_cols=62 Identities=42% Similarity=0.751 Sum_probs=59.6
Q ss_pred CchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHHHHhcCCcchhhhc
Q 005584 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVG--ADGAFKLVSEAWTLLSDSGKRSSYD 127 (689)
Q Consensus 66 D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~--a~~~f~~I~eAy~vLsD~~kR~~YD 127 (689)
|||+||||+++++.++||++|++|++.+|||++.... +++.|..|++||++|+||.+|..||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988766 8899999999999999999999998
No 38
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=8.7e-16 Score=166.35 Aligned_cols=75 Identities=37% Similarity=0.614 Sum_probs=68.9
Q ss_pred CCcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHHHHHHHhcCCcchhhhccccccccCCC
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC--VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVAPG 137 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~--~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~ 137 (689)
..++||+||||.++|++.+||++||||||+||||||+. ..|.+.|++|+.||+|||||..|+.||.++...+.+.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 35789999999999999999999999999999999876 4688999999999999999999999999998777644
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.4e-15 Score=154.17 Aligned_cols=72 Identities=42% Similarity=0.639 Sum_probs=67.9
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhccccccccC
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVA 135 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~~ 135 (689)
..|+|.|||++++|+.++|||+||+|++++|||+++. |.+.+.|++|++||++|+||.+|..||..+..++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 5789999999999999999999999999999999977 78999999999999999999999999999876654
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.6e-15 Score=160.09 Aligned_cols=74 Identities=35% Similarity=0.603 Sum_probs=68.6
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC----ChHHHHHHHHHHHHHhcCCcchhhhccccccccCCC
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCV----GADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVAPG 137 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~----~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~ 137 (689)
+.|||.+|+|+++|+.+|||+||||+++.+||||...+ .|++.|+.|.+||+|||||.+|+.||.+|..++...
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~ 85 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTE 85 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccccc
Confidence 56999999999999999999999999999999998764 589999999999999999999999999999888743
No 41
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5.7e-15 Score=155.74 Aligned_cols=73 Identities=40% Similarity=0.640 Sum_probs=68.3
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhccccccccCC
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVAP 136 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~~~ 136 (689)
..|||.||||+.+|+..+|+||||+.||++|||||+. |.|.+.|+.|.+||+||+|+.+|..||..+..+...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~ 77 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA 77 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc
Confidence 6799999999999999999999999999999999975 679999999999999999999999999998776543
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.53 E-value=9.1e-15 Score=170.31 Aligned_cols=73 Identities=23% Similarity=0.367 Sum_probs=68.3
Q ss_pred CCcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhccccccccC
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVA 135 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~~ 135 (689)
...|||+||||+++|+..+||+|||+||+++||||++...|...|+.|++||+|||||.+|+.||.+|..+..
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 4689999999999999999999999999999999998777889999999999999999999999999876654
No 43
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.53 E-value=8e-15 Score=156.70 Aligned_cols=67 Identities=40% Similarity=0.751 Sum_probs=64.3
Q ss_pred cCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhccccc
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRS 131 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~ 131 (689)
.|||+||||+++|+.++||+|||+||+++|||++..+.++++|++|++||++|+||.+|+.||..+.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 5999999999999999999999999999999999888899999999999999999999999999764
No 44
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.7e-14 Score=143.42 Aligned_cols=71 Identities=39% Similarity=0.643 Sum_probs=65.0
Q ss_pred CCcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CChHHHHHHHHHHHHHhcCCcchhhhccccccc
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC---VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQ 133 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~---~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (689)
...|+|+||||.++|++.+||+|||+|+|++|||+++. ..|...|+.|+.||.||+|.++|+.||..|...
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 46699999999999999999999999999999999953 468899999999999999999999999987543
No 45
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.47 E-value=6.7e-14 Score=113.43 Aligned_cols=58 Identities=45% Similarity=0.737 Sum_probs=54.0
Q ss_pred cCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCC--CCChHHHHHHHHHHHHHhcCCcc
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNK--CVGADGAFKLVSEAWTLLSDSGK 122 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~--~~~a~~~f~~I~eAy~vLsD~~k 122 (689)
.|||+||||+++++.++||++||+|++.+|||++. .+.+++.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999999999999999999999999997 56789999999999999999853
No 46
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.44 E-value=1.6e-13 Score=109.10 Aligned_cols=54 Identities=50% Similarity=0.851 Sum_probs=51.6
Q ss_pred CchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcC
Q 005584 66 DYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSD 119 (689)
Q Consensus 66 D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD 119 (689)
|||+||||+++++.++||++||+|++.+|||++.. ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999976 6789999999999999987
No 47
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=9.9e-13 Score=131.27 Aligned_cols=72 Identities=29% Similarity=0.588 Sum_probs=66.4
Q ss_pred CCcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~-~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
...|+|+||||++++++.|||||||+|++++||||++. .+.++.|..|+.||+.|+|+..|..|..+++...
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence 46899999999999999999999999999999999987 5678889999999999999999999999976544
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.37 E-value=5.2e-13 Score=152.95 Aligned_cols=70 Identities=40% Similarity=0.640 Sum_probs=65.8
Q ss_pred cCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
.|||+||||+++|+..+||++||+|++++|||++..+.+..+|+.|++||++|+||.+|+.||.++..+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 5999999999999999999999999999999999887888999999999999999999999999876543
No 49
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.2e-13 Score=131.00 Aligned_cols=67 Identities=43% Similarity=0.751 Sum_probs=63.4
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC--hHHHHHHHHHHHHHhcCCcchhhhcccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVG--ADGAFKLVSEAWTLLSDSGKRSSYDLKR 130 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~--a~~~f~~I~eAy~vLsD~~kR~~YD~~~ 130 (689)
..|||+||||.++|+..+|+++||+|++++|||+++... +++.|+.|++||++|+|+.+|..||..+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 579999999999999999999999999999999998654 8999999999999999999999999874
No 50
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.6e-13 Score=145.57 Aligned_cols=129 Identities=28% Similarity=0.357 Sum_probs=91.4
Q ss_pred CCcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhccccccccCCCCcccC
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVAPGVVQTN 142 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~~~~~~~~~ 142 (689)
...|.|.||||++++++++|||.|||+|.+.|||||..+.|+++|+.|..||++|+|+++|..||........-...-..
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~kene~~~~~~~ 312 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKENELHRQVIS 312 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999876433211000000
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCcceEEEEeccccceeeeeeeecC--ceeeCCCCCCceEEEe
Q 005584 143 LSSVYASGVAGFGNCPNSPIPHTRIDTFWTVCTSCKVQYEYLRKYVN--KRLSCKNCRGTFIAVE 205 (689)
Q Consensus 143 ~~~~~~~~~~gf~~~~~~~~~~~~~~tFwt~C~~C~~~yey~r~yln--~~l~C~~C~g~F~A~e 205 (689)
... ..... .....-...|.+|...+-..-+-.. ....|+.|+.-+.|.+
T Consensus 313 ~~~------------~~~~~--~eEA~ntI~CskC~n~H~r~~T~rs~s~AR~C~~C~~~H~AKd 363 (490)
T KOG0720|consen 313 SLN------------DLQKA--VEEARNTIFCSKCGNTHFRVLTSRSPSQARWCAECGVKHPAKD 363 (490)
T ss_pred HHH------------HHHHH--HHHHHhheehhhhcCcceeeeecCChhhhHHHHHhCccCcccc
Confidence 000 00000 0001123558888877644333222 3477999988877755
No 51
>PHA03102 Small T antigen; Reviewed
Probab=99.34 E-value=1e-12 Score=126.73 Aligned_cols=66 Identities=24% Similarity=0.334 Sum_probs=61.2
Q ss_pred CchhhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhcccccccc
Q 005584 66 DYYSVLGLKPSA--NKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQV 134 (689)
Q Consensus 66 D~Y~ILgv~~~a--~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~~ 134 (689)
.+|+||||+++| +.++||+|||+|++++||||+ +.+++|+.|++||++|+|+.+|..||..+....
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg---g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG---GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---chhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 579999999999 999999999999999999997 567899999999999999999999999876543
No 52
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.20 E-value=2.3e-11 Score=119.93 Aligned_cols=66 Identities=24% Similarity=0.457 Sum_probs=58.4
Q ss_pred cCchhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHHHHhcCCcchhhhcccc
Q 005584 65 IDYYSVLGLKPS--ANKEAVKKQYRKMAVLLHPDKNKCVG------ADGAFKLVSEAWTLLSDSGKRSSYDLKR 130 (689)
Q Consensus 65 ~D~Y~ILgv~~~--a~~~eIKkaYRkLal~~HPDK~~~~~------a~~~f~~I~eAy~vLsD~~kR~~YD~~~ 130 (689)
.|||+||||++. ++..+|+++||+|++++|||+..... +...|..|++||++|+||.+|+.|+-..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 489999999996 78899999999999999999975432 4568999999999999999999999654
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.15 E-value=3.3e-11 Score=118.25 Aligned_cols=66 Identities=32% Similarity=0.440 Sum_probs=57.6
Q ss_pred cCchhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCC----hHHHHHHHHHHHHHhcCCcchhhhcccc
Q 005584 65 IDYYSVLGLKPS--ANKEAVKKQYRKMAVLLHPDKNKCVG----ADGAFKLVSEAWTLLSDSGKRSSYDLKR 130 (689)
Q Consensus 65 ~D~Y~ILgv~~~--a~~~eIKkaYRkLal~~HPDK~~~~~----a~~~f~~I~eAy~vLsD~~kR~~YD~~~ 130 (689)
.|||+||||++. ++..+|+++||+|++++|||+..... +...+..|++||++|+||.+|+.|+-..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 589999999996 78999999999999999999986421 2334789999999999999999998775
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.1e-11 Score=121.83 Aligned_cols=69 Identities=33% Similarity=0.582 Sum_probs=65.8
Q ss_pred CCcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhccccc
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRS 131 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~ 131 (689)
|..|.|+||||.+.++..+|.+|||+||+++|||+++.+.+.+.|+.|..||++|.|.+.|..||-...
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 578999999999999999999999999999999999999999999999999999999999999997754
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.12 E-value=9.5e-11 Score=115.68 Aligned_cols=69 Identities=26% Similarity=0.384 Sum_probs=60.9
Q ss_pred CCcCchhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHHHHhcCCcchhhhccccc
Q 005584 63 GEIDYYSVLGLKPS--ANKEAVKKQYRKMAVLLHPDKNKCVG------ADGAFKLVSEAWTLLSDSGKRSSYDLKRS 131 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~--a~~~eIKkaYRkLal~~HPDK~~~~~------a~~~f~~I~eAy~vLsD~~kR~~YD~~~~ 131 (689)
+..|||++|||++. .+..+|+++||+|++++|||+..... +...|..|++||.+|+||.+|+.|+-...
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 46899999999997 67899999999999999999985432 45679999999999999999999998753
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5e-11 Score=123.63 Aligned_cols=68 Identities=46% Similarity=0.712 Sum_probs=63.8
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--ChHHHHHHHHHHHHHhcCCcchhhhccccc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCV--GADGAFKLVSEAWTLLSDSGKRSSYDLKRS 131 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~--~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~ 131 (689)
..|||.||+|.+.|+..+|++|||+||+.+|||+++.. .++.+|++|.+||++|+|+.+|..||..+.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999999999998877 566689999999999999999999999987
No 57
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.07 E-value=2e-10 Score=113.74 Aligned_cols=68 Identities=28% Similarity=0.390 Sum_probs=58.3
Q ss_pred CcCchhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCC-Ch-----HHHHHHHHHHHHHhcCCcchhhhccccc
Q 005584 64 EIDYYSVLGLKPS--ANKEAVKKQYRKMAVLLHPDKNKCV-GA-----DGAFKLVSEAWTLLSDSGKRSSYDLKRS 131 (689)
Q Consensus 64 ~~D~Y~ILgv~~~--a~~~eIKkaYRkLal~~HPDK~~~~-~a-----~~~f~~I~eAy~vLsD~~kR~~YD~~~~ 131 (689)
..|||+||||++. ++..+|+++||+|++++|||+.... .+ .+.+..|++||.+|+||.+|+.|+....
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 4799999999995 6899999999999999999998643 22 3335899999999999999999997643
No 58
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.02 E-value=3.3e-10 Score=104.42 Aligned_cols=52 Identities=29% Similarity=0.482 Sum_probs=48.7
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLS 118 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLs 118 (689)
..++|+||||+++++.++||++||+|++++|||++ ++.+.|+.|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999999985 67889999999999995
No 59
>PHA02624 large T antigen; Provisional
Probab=98.91 E-value=1e-09 Score=125.05 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=57.3
Q ss_pred CcCchhhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhc
Q 005584 64 EIDYYSVLGLKPSA--NKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYD 127 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a--~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD 127 (689)
..++|+||||+++| +..+||+|||+||+++||||+ +++++|+.|++||++|+|+.+|..|.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---Gdeekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---GDEEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---CcHHHHHHHHHHHHHHhcHHHhhhcc
Confidence 35899999999999 999999999999999999996 67899999999999999999999993
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.89 E-value=1.8e-09 Score=113.54 Aligned_cols=55 Identities=31% Similarity=0.470 Sum_probs=50.2
Q ss_pred cCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------CChHHHHHHHHHHHHHhcC
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC--------VGADGAFKLVSEAWTLLSD 119 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~--------~~a~~~f~~I~eAy~vLsD 119 (689)
.|+|+||||++++|.++||++||+|++++|||++.. +.++++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999743 2377899999999999975
No 61
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.9e-09 Score=105.19 Aligned_cols=64 Identities=36% Similarity=0.636 Sum_probs=58.5
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CChHHHHHHHHHHHHHhcCCcchhhhc
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC--VGADGAFKLVSEAWTLLSDSGKRSSYD 127 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~--~~a~~~f~~I~eAy~vLsD~~kR~~YD 127 (689)
..|+|+||+|.|..+.++||+.||+|+++.|||||+. +.|..+|..|..||..|-|+..|..-+
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 6799999999999999999999999999999999986 469999999999999999998665543
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.65 E-value=4e-08 Score=97.14 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=58.5
Q ss_pred cCchhhccCCCC--CCHHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHHHHhcCCcchhhhccccc
Q 005584 65 IDYYSVLGLKPS--ANKEAVKKQYRKMAVLLHPDKNKCVG------ADGAFKLVSEAWTLLSDSGKRSSYDLKRS 131 (689)
Q Consensus 65 ~D~Y~ILgv~~~--a~~~eIKkaYRkLal~~HPDK~~~~~------a~~~f~~I~eAy~vLsD~~kR~~YD~~~~ 131 (689)
.|||++|||++. .+...++++||+|.+.+|||+....+ +.+.-..||+||.+|+||.+|+.|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 599999999996 89999999999999999999976544 34457899999999999999999976643
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.63 E-value=3.5e-08 Score=107.45 Aligned_cols=71 Identities=27% Similarity=0.521 Sum_probs=63.7
Q ss_pred CCcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCC------CChHHHHHHHHHHHHHhcCCcchhhhccccccc
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC------VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQ 133 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~------~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (689)
...|+|+|||++.+++..+||++||+|+.++||||.+. ..-++.++.|++||+.|+|...|..|-.+|...
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 36899999999999999999999999999999999764 246788999999999999999999998886543
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.55 E-value=9.5e-08 Score=93.16 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHHHHhcCCcchhhhccccc
Q 005584 77 ANKEAVKKQYRKMAVLLHPDKNKCVG------ADGAFKLVSEAWTLLSDSGKRSSYDLKRS 131 (689)
Q Consensus 77 a~~~eIKkaYRkLal~~HPDK~~~~~------a~~~f~~I~eAy~vLsD~~kR~~YD~~~~ 131 (689)
.+..+|+++||+|++++|||+..... +...|..|++||++|+||.+|+.|+-.+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 47899999999999999999964432 56789999999999999999999998864
No 65
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.9e-07 Score=96.13 Aligned_cols=69 Identities=33% Similarity=0.479 Sum_probs=61.8
Q ss_pred CCcCchhhccCCC---CCCHHHHHHHHHHHHHHhCCCCCC---CCChHHHHHHHHHHHHHhcCCcchhhhccccc
Q 005584 63 GEIDYYSVLGLKP---SANKEAVKKQYRKMAVLLHPDKNK---CVGADGAFKLVSEAWTLLSDSGKRSSYDLKRS 131 (689)
Q Consensus 63 ~~~D~Y~ILgv~~---~a~~~eIKkaYRkLal~~HPDK~~---~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~ 131 (689)
+..|+|.+|||+. .+++.+|.++.++..++||||+.. ..+.++.|++|+.||+||+|+.+|..||..--
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 4689999999996 588999999999999999999973 35689999999999999999999999997643
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=4.3e-05 Score=77.50 Aligned_cols=56 Identities=21% Similarity=0.514 Sum_probs=51.9
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHH-HhcC
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWT-LLSD 119 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~-vLsD 119 (689)
-+.+|.||||...|+..+++.+|.+|++++|||........+.|..|.+||. ||+.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999988888899999999998 8864
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=3.8e-05 Score=90.66 Aligned_cols=52 Identities=31% Similarity=0.457 Sum_probs=45.9
Q ss_pred cCchhhccCCCC----CCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhc
Q 005584 65 IDYYSVLGLKPS----ANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLS 118 (689)
Q Consensus 65 ~D~Y~ILgv~~~----a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLs 118 (689)
.+-|+||.|+-+ -+.+.||+||+|||.+||||||+ .-.+.|..|++||+.|+
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP--EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP--EGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHH
Confidence 467999999863 34589999999999999999996 66889999999999998
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00059 Score=61.90 Aligned_cols=48 Identities=29% Similarity=0.489 Sum_probs=42.6
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCC
Q 005584 70 VLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDS 120 (689)
Q Consensus 70 ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~ 120 (689)
||||.+.++.+.||.++||+.+..|||+..+ .-.-..|+||+++|...
T Consensus 61 IL~v~~s~~k~KikeaHrriM~~NHPD~GGS---PYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 61 ILGVTPSLDKDKIKEAHRRIMLANHPDRGGS---PYLASKINEAKDLLEGT 108 (112)
T ss_pred HhCCCccccHHHHHHHHHHHHHcCCCcCCCC---HHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999954 44556899999999754
No 69
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.47 E-value=0.0044 Score=70.20 Aligned_cols=69 Identities=30% Similarity=0.502 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhhhhccCCcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC--------hHHHHHHHHHHH
Q 005584 43 GIAQMVATFEVYFASEIKCNGEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVG--------ADGAFKLVSEAW 114 (689)
Q Consensus 43 ~i~q~l~~~~v~~aa~~~~~~~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~--------a~~~f~~I~eAy 114 (689)
+|+.||.+++..+=.+. . ..=+.+..-.+.++|||+|||..|.+||||.+..+ |++.|..+.+||
T Consensus 373 NIRALLSTLh~VLW~es------~-WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eaw 445 (453)
T KOG0431|consen 373 NIRALLSTLHYVLWPES------G-WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAW 445 (453)
T ss_pred cHHHHHHHHhHhhcCcc------C-cccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 56777777655442221 1 12345555679999999999999999999987654 577788888888
Q ss_pred HHhc
Q 005584 115 TLLS 118 (689)
Q Consensus 115 ~vLs 118 (689)
....
T Consensus 446 n~f~ 449 (453)
T KOG0431|consen 446 NKFN 449 (453)
T ss_pred Hhhh
Confidence 7543
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.016 Score=57.46 Aligned_cols=54 Identities=31% Similarity=0.474 Sum_probs=46.7
Q ss_pred CcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--------ChHHHHHHHHHHHHHh
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCV--------GADGAFKLVSEAWTLL 117 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~--------~a~~~f~~I~eAy~vL 117 (689)
..|.|.+|++...++..+|+++||++....|||+-... .+.+.++.|++||+.+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 37999999999999999999999999999999986442 3678888888888743
No 71
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.014 Score=56.65 Aligned_cols=70 Identities=21% Similarity=0.404 Sum_probs=55.6
Q ss_pred cCCcCchhhccCCC--CCCHHHHHHHHHHHHHHhCCCCCCCC------ChHHHHHHHHHHHHHhcCCcchhhhccccc
Q 005584 62 NGEIDYYSVLGLKP--SANKEAVKKQYRKMAVLLHPDKNKCV------GADGAFKLVSEAWTLLSDSGKRSSYDLKRS 131 (689)
Q Consensus 62 ~~~~D~Y~ILgv~~--~a~~~eIKkaYRkLal~~HPDK~~~~------~a~~~f~~I~eAy~vLsD~~kR~~YD~~~~ 131 (689)
+...+||.|+|... -.++.-++--|.-...++|||+...+ -|.+.-..|++||.+|.||..|+.|=.+..
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 34578999997664 45666677689999999999995321 366778999999999999999999987654
No 72
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=92.61 E-value=0.09 Score=38.97 Aligned_cols=33 Identities=18% Similarity=0.592 Sum_probs=27.4
Q ss_pred EEeccccceeeeeeeecC---ceeeCCCCCCceEEE
Q 005584 172 TVCTSCKVQYEYLRKYVN---KRLSCKNCRGTFIAV 204 (689)
Q Consensus 172 t~C~~C~~~yey~r~yln---~~l~C~~C~g~F~A~ 204 (689)
..|++|+..|.+....+. ..+.|++|+..|.|+
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~~~ 38 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWYAR 38 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEEeC
Confidence 579999999999876654 359999999999873
No 73
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.17 E-value=0.12 Score=51.33 Aligned_cols=66 Identities=27% Similarity=0.343 Sum_probs=50.2
Q ss_pred CchhhccCCCCC--CHHHHHHHHHHHHHHhCCCCCCCCCh------HHHHHHHHHHHHHhcCCcchhhhccccc
Q 005584 66 DYYSVLGLKPSA--NKEAVKKQYRKMAVLLHPDKNKCVGA------DGAFKLVSEAWTLLSDSGKRSSYDLKRS 131 (689)
Q Consensus 66 D~Y~ILgv~~~a--~~~eIKkaYRkLal~~HPDK~~~~~a------~~~f~~I~eAy~vLsD~~kR~~YD~~~~ 131 (689)
||....|..+.+ +...++.+|+.+.+.+|||+....+. -..+..++.||.+|.||-+|..|=....
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 344445555533 44678999999999999999866543 3468889999999999999999976543
No 74
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.14 E-value=1 Score=31.31 Aligned_cols=33 Identities=21% Similarity=0.141 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 005584 8 ALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPG 40 (689)
Q Consensus 8 A~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~ 40 (689)
|.-+..++...+..+++..|++.+++|.+++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 456778899999999999999999999999996
No 75
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=88.48 E-value=0.91 Score=43.12 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=38.2
Q ss_pred hhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCc
Q 005584 68 YSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSG 121 (689)
Q Consensus 68 Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~ 121 (689)
..||+|++..+.++|.+.|.+|-...+|++. |+.-.=..|..|.+.|....
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG---GSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKG---GSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCT---S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcC---CCHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999988 66666678888888886443
No 76
>PF11926 DUF3444: Domain of unknown function (DUF3444); InterPro: IPR024593 This entry represents an uncharacterised domain. This domain is found in DnaJ, cytosine-specific methyltransferases, and members from the zinc finger, C3HC4 type family.
Probab=88.19 E-value=0.93 Score=46.85 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=44.7
Q ss_pred CCCCEEEeecC---------CCCCCcceeEEEEEee--cCCcEEEEEecccCCCCccCccccccCCceeeeeeEEeccee
Q 005584 475 KPKQIWAIYDE---------DDGMPRLYCLIRQIIS--IKPFKILITYLSSKTDSEFGSVNWVDSGFTKSCGHFRAYNSD 543 (689)
Q Consensus 475 ~~gQiWA~Yd~---------~D~mPr~Ya~I~kv~~--~~~f~l~i~wLe~~~~~e~~~~~W~~~~~p~~CG~F~~~~~~ 543 (689)
+.|.|||||-+ .|-.+.-|..+. |++ ...--+.|..|.-..... ...++...+- .+.|.|-+.
T Consensus 124 rkGEvWAlYknW~~~w~~~~~~~~~~~YdiVE-Vl~d~~~~~gi~V~~L~Kv~Gf~-svF~~~~~~~---~~~~~Ip~~- 197 (217)
T PF11926_consen 124 RKGEVWALYKNWSPDWSSSTDDERKYEYDIVE-VLSDYSEEAGIKVAPLVKVKGFK-SVFKRAEEGG---EAVFTIPKS- 197 (217)
T ss_pred CcccEeEEecCCCCCCCcCcCcCcccceEEEE-EeecCCccCcEEEEEEEEecCcE-eeeeecCCCC---cceEEEChH-
Confidence 46999999965 255566677666 444 334678888886533221 1112111111 445666654
Q ss_pred eeecccceEEEeeeeE
Q 005584 544 VVDQVNIFSHLLRGEK 559 (689)
Q Consensus 544 ~~~~~~~FSH~v~~~~ 559 (689)
.+..|||+|-+..
T Consensus 198 ---E~~RFSHqIPa~r 210 (217)
T PF11926_consen 198 ---ELLRFSHQIPAFR 210 (217)
T ss_pred ---HcCeeeccCCCEE
Confidence 5688999998543
No 77
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=87.74 E-value=0.41 Score=35.65 Aligned_cols=32 Identities=16% Similarity=0.619 Sum_probs=26.7
Q ss_pred EEEeccccceeeeeeeec---CceeeCCCCCCceE
Q 005584 171 WTVCTSCKVQYEYLRKYV---NKRLSCKNCRGTFI 202 (689)
Q Consensus 171 wt~C~~C~~~yey~r~yl---n~~l~C~~C~g~F~ 202 (689)
.+.||.|...|.+...-+ ...++|+.|+..|.
T Consensus 2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred EEECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 368999999999988743 46799999998875
No 78
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.78 E-value=2.1 Score=32.38 Aligned_cols=40 Identities=15% Similarity=-0.076 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 005584 10 RAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVA 49 (689)
Q Consensus 10 r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~ 49 (689)
-+..+|+.++..|++++|.+.++++.+++|+...+...|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4567899999999999999999999999999876655543
No 79
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.34 E-value=2.3 Score=29.84 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 005584 8 ALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPG 40 (689)
Q Consensus 8 A~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~ 40 (689)
|.-+..++...+..++++.|...+.+|.+++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 566788999999999999999999999999996
No 80
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.02 E-value=2.7 Score=34.03 Aligned_cols=45 Identities=20% Similarity=0.102 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 005584 7 EALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATF 51 (689)
Q Consensus 7 eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~ 51 (689)
.|..+..+|...+..+++..|+.++.+|.+++|+...+...+..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~ 46 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLA 46 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 578899999999999999999999999999999987665555554
No 81
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=82.09 E-value=0.93 Score=33.63 Aligned_cols=30 Identities=23% Similarity=0.774 Sum_probs=25.0
Q ss_pred EEeccccceeeeeeeecC---ceeeCCCCCCce
Q 005584 172 TVCTSCKVQYEYLRKYVN---KRLSCKNCRGTF 201 (689)
Q Consensus 172 t~C~~C~~~yey~r~yln---~~l~C~~C~g~F 201 (689)
..|+.|..+|++...-+. ..+.|+.|+..|
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence 579999999999887544 459999999876
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=79.24 E-value=12 Score=41.42 Aligned_cols=111 Identities=17% Similarity=0.194 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhhhhccCCcCchhhccCCCCCCHHHHH
Q 005584 4 NIEEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYFASEIKCNGEIDYYSVLGLKPSANKEAVK 83 (689)
Q Consensus 4 n~~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~aa~~~~~~~~D~Y~ILgv~~~a~~~eIK 83 (689)
+..|+++-+++..+.|.++.+..|+..+.+|..++|.- .-.+...+-+++|......+-.|+=.||.+.|+..-+-|.
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~--Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN--YQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh--HHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 67899999999999999999999999999999999963 3344556677888877666778999999999986665554
Q ss_pred HHH--------------HHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Q 005584 84 KQY--------------RKMAVLLHPDKNKCVGADGAFKLVSEAWTL 116 (689)
Q Consensus 84 kaY--------------RkLal~~HPDK~~~~~a~~~f~~I~eAy~v 116 (689)
+.- -+.++...|..+....+.++...|.+-|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l 158 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVL 158 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHH
Confidence 431 122344555444444555556666655543
No 83
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=77.77 E-value=2.8 Score=32.51 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=26.1
Q ss_pred EEeccccceeeeeeeecCceeeCCCCCCceEEEe
Q 005584 172 TVCTSCKVQYEYLRKYVNKRLSCKNCRGTFIAVE 205 (689)
Q Consensus 172 t~C~~C~~~yey~r~yln~~l~C~~C~g~F~A~e 205 (689)
..|+.|+..+++..... .+.|+.|+.+++..+
T Consensus 4 y~C~~CG~~~~~~~~~~--~~~Cp~CG~~~~~~~ 35 (46)
T PRK00398 4 YKCARCGREVELDEYGT--GVRCPYCGYRILFKE 35 (46)
T ss_pred EECCCCCCEEEECCCCC--ceECCCCCCeEEEcc
Confidence 57999999999976544 789999999888643
No 84
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=70.83 E-value=7.8 Score=37.49 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhhhhccCCcCch
Q 005584 8 ALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYFASEIKCNGEIDYY 68 (689)
Q Consensus 8 A~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~aa~~~~~~~~D~Y 68 (689)
+.++++.|++++..+|+.-|..++..+...+|....++++.+.+...++.+..-...++||
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~~Rn~y 130 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENANWRNYY 130 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 4678889999999999999999999999999999888888887666555544322344555
No 85
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=69.76 E-value=4.5 Score=32.89 Aligned_cols=34 Identities=21% Similarity=0.481 Sum_probs=24.3
Q ss_pred eEEEEeccccce----eeeeeeecCceeeCCCCCCceE
Q 005584 169 TFWTVCTSCKVQ----YEYLRKYVNKRLSCKNCRGTFI 202 (689)
Q Consensus 169 tFwt~C~~C~~~----yey~r~yln~~l~C~~C~g~F~ 202 (689)
+-|..||.|+.. ..-.-...|..+.|+.|++..+
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~Etl 39 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETL 39 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEE
Confidence 459999999843 2333345678899999998544
No 86
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=69.19 E-value=9.8 Score=26.40 Aligned_cols=32 Identities=25% Similarity=0.118 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCC
Q 005584 8 ALRAKEIAEKRFVEKDFAGAKNYALKAKMLCP 39 (689)
Q Consensus 8 A~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P 39 (689)
|.-+..++......+|++.|..++.++.++.|
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45577889999999999999999999999887
No 87
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.74 E-value=11 Score=39.02 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHH
Q 005584 4 NIEEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEG 43 (689)
Q Consensus 4 n~~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~ 43 (689)
++++|.+++.-....|..+||.+|..-+..|..++|++..
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~ 130 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST 130 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH
Confidence 4678899999999999999999999999999999998753
No 88
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.70 E-value=20 Score=28.85 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Q 005584 11 AKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYF 55 (689)
Q Consensus 11 ~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~ 55 (689)
+.-+|...+..+||..|++++.++.++.|+...+..+...++-.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 345688899999999999999999999999988777777665544
No 89
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=67.98 E-value=4.5 Score=32.71 Aligned_cols=37 Identities=19% Similarity=0.029 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhCC
Q 005584 3 ANIEEALRAKEIAEKRFVEK-DFAGAKNYALKAKMLCP 39 (689)
Q Consensus 3 ~n~~eA~r~~~iAe~~l~~~-D~~gA~~~a~kA~~l~P 39 (689)
.+.+.+.-+..++...+..+ ++..|++++.+|.+++|
T Consensus 32 ~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 32 LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34456777788899999999 79999999999999988
No 90
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=67.87 E-value=13 Score=29.67 Aligned_cols=41 Identities=12% Similarity=0.031 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q 005584 13 EIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEV 53 (689)
Q Consensus 13 ~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v 53 (689)
..|...+..++++.|++.+.++.+.+|....+...+..+..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY 42 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999999997766666655433
No 91
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=67.25 E-value=7.7 Score=28.73 Aligned_cols=31 Identities=26% Similarity=0.643 Sum_probs=24.9
Q ss_pred eEEEEeccccceeeeeeeec-CceeeCCCCCC
Q 005584 169 TFWTVCTSCKVQYEYLRKYV-NKRLSCKNCRG 199 (689)
Q Consensus 169 tFwt~C~~C~~~yey~r~yl-n~~l~C~~C~g 199 (689)
.|...|+.|+..++...... ...+.|+.|+.
T Consensus 3 ~Y~y~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 3 IYEYRCEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred CEEEEcCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 56778999999998877543 56788999997
No 92
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=66.09 E-value=12 Score=25.41 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 005584 10 RAKEIAEKRFVEKDFAGAKNYALKAKMLCPG 40 (689)
Q Consensus 10 r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~ 40 (689)
.+..+|...+..++++.|++.+.+....+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3567888999999999999999999999996
No 93
>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.
Probab=65.89 E-value=4.4 Score=32.89 Aligned_cols=32 Identities=16% Similarity=0.470 Sum_probs=26.4
Q ss_pred cceEEEEeccccceeeeeeeecCce---eeCCCCCC
Q 005584 167 IDTFWTVCTSCKVQYEYLRKYVNKR---LSCKNCRG 199 (689)
Q Consensus 167 ~~tFwt~C~~C~~~yey~r~yln~~---l~C~~C~g 199 (689)
..+|...| +|+..|.+....+... +.|++|+-
T Consensus 14 ~~~~~y~C-RCG~~f~i~e~~l~~~~~iv~C~sCSL 48 (55)
T PF05207_consen 14 EGVYSYPC-RCGGEFEISEEDLEEGEVIVQCDSCSL 48 (55)
T ss_dssp TTEEEEEE-TTSSEEEEEHHHHHCT--EEEETTTTE
T ss_pred CCEEEEcC-CCCCEEEEcchhccCcCEEEECCCCcc
Confidence 34688889 9999999988887544 89999984
No 94
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=65.50 E-value=6.2 Score=42.98 Aligned_cols=54 Identities=28% Similarity=0.470 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC-----CCChHHHHHHHHHHHHHhcCCcchhhhcccc
Q 005584 77 ANKEAVKKQYRKMAVLLHPDKNK-----CVGADGAFKLVSEAWTLLSDSGKRSSYDLKR 130 (689)
Q Consensus 77 a~~~eIKkaYRkLal~~HPDK~~-----~~~a~~~f~~I~eAy~vLsD~~kR~~YD~~~ 130 (689)
++..+|+.+|+..++.+||++.. ....++.|+.|.+||++|.+..+|..+|...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 56788999999999999999874 2356778999999999999977777777664
No 95
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=64.79 E-value=3.9 Score=40.13 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=24.2
Q ss_pred Eecccccee-e-eeee------ecCceeeCCCCCCceEEEecCC
Q 005584 173 VCTSCKVQY-E-YLRK------YVNKRLSCKNCRGTFIAVETGA 208 (689)
Q Consensus 173 ~C~~C~~~y-e-y~r~------yln~~l~C~~C~g~F~A~e~~~ 208 (689)
.||+|+... + .... .+...-.|++|+++|.++|.-.
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFERVE 45 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEecc
Confidence 599999754 1 1111 2223467999999999998744
No 96
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=64.25 E-value=10 Score=28.98 Aligned_cols=31 Identities=19% Similarity=0.591 Sum_probs=25.2
Q ss_pred eEEEEeccccceeeeeeeecC-ceeeCCCCCC
Q 005584 169 TFWTVCTSCKVQYEYLRKYVN-KRLSCKNCRG 199 (689)
Q Consensus 169 tFwt~C~~C~~~yey~r~yln-~~l~C~~C~g 199 (689)
+|...|..|+..++.....-. ..+.|+.|++
T Consensus 3 ~Yey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQSISEDDPVPCPECGS 34 (42)
T ss_pred CEEEEeCCCCCEEEEEEEcCCCCCCcCCCCCC
Confidence 577889999999988776655 6788999987
No 97
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=64.14 E-value=13 Score=30.31 Aligned_cols=31 Identities=16% Similarity=0.102 Sum_probs=20.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCChHHHH
Q 005584 15 AEKRFVEKDFAGAKNYALKAKMLCPGLEGIA 45 (689)
Q Consensus 15 Ae~~l~~~D~~gA~~~a~kA~~l~P~l~~i~ 45 (689)
+..++..+|+..|...+.++..++|....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 32 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELW 32 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhh
Confidence 3456667777777777777777777654433
No 98
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=63.34 E-value=61 Score=35.74 Aligned_cols=42 Identities=26% Similarity=0.214 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 005584 9 LRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVAT 50 (689)
Q Consensus 9 ~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~ 50 (689)
..++..|..++..++|..|+..+.+|.++.|....+...++.
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~ 44 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQ 44 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 357888999999999999999999999999987665544443
No 99
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=62.16 E-value=11 Score=30.23 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=20.6
Q ss_pred HHhcCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 005584 19 FVEKDFAGAKNYALKAKMLCPGLEGIAQMVAT 50 (689)
Q Consensus 19 l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~ 50 (689)
|..+++..|.+.+.++...+|....+.-.++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~ 33 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQ 33 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 56677777777777777777765555444443
No 100
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=60.92 E-value=10 Score=30.83 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=31.8
Q ss_pred EeccccceeeeeeeecCceeeCCCCCCceEEEecCC
Q 005584 173 VCTSCKVQYEYLRKYVNKRLSCKNCRGTFIAVETGA 208 (689)
Q Consensus 173 ~C~~C~~~yey~r~yln~~l~C~~C~g~F~A~e~~~ 208 (689)
.|+.|+..+++....++..+.|+.|+-.|..+.+.+
T Consensus 4 ~CP~CG~~iev~~~~~GeiV~Cp~CGaeleVv~~~p 39 (54)
T TIGR01206 4 ECPDCGAEIELENPELGELVICDECGAELEVVSLDP 39 (54)
T ss_pred CCCCCCCEEecCCCccCCEEeCCCCCCEEEEEeCCC
Confidence 699999999998888888999999999888877655
No 101
>PF13446 RPT: A repeated domain in UCH-protein
Probab=60.59 E-value=17 Score=29.66 Aligned_cols=26 Identities=12% Similarity=0.428 Sum_probs=23.5
Q ss_pred CchhhccCCCCCCHHHHHHHHHHHHH
Q 005584 66 DYYSVLGLKPSANKEAVKKQYRKMAV 91 (689)
Q Consensus 66 D~Y~ILgv~~~a~~~eIKkaYRkLal 91 (689)
+-|++|||+++.+++.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999998877
No 102
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.84 E-value=83 Score=33.25 Aligned_cols=72 Identities=28% Similarity=0.275 Sum_probs=51.3
Q ss_pred HHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhhhhccCCcCchhhccCCCCCCHHHHH
Q 005584 5 IEEA-LRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYFASEIKCNGEIDYYSVLGLKPSANKEAVK 83 (689)
Q Consensus 5 ~~eA-~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~aa~~~~~~~~D~Y~ILgv~~~a~~~eIK 83 (689)
+.+| ..-+++|...|+.+|+..|+.-+.||.+.+|+.....-.++. +|.-+|....| .
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~----------------~Yq~~Ge~~~A-----~ 89 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAH----------------YYQKLGENDLA-----D 89 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH----------------HHHHcCChhhH-----H
Confidence 3444 455788999999999999999999999999998654433332 35555554333 2
Q ss_pred HHHHHHHHHhCCCCC
Q 005584 84 KQYRKMAVLLHPDKN 98 (689)
Q Consensus 84 kaYRkLal~~HPDK~ 98 (689)
..| +.|+.+||+..
T Consensus 90 e~Y-rkAlsl~p~~G 103 (250)
T COG3063 90 ESY-RKALSLAPNNG 103 (250)
T ss_pred HHH-HHHHhcCCCcc
Confidence 334 45888999974
No 103
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.25 E-value=15 Score=33.19 Aligned_cols=38 Identities=29% Similarity=0.718 Sum_probs=30.2
Q ss_pred CccCccCCCCCCEEEeecCCCCCCcceeEEEEEeecCCcEE
Q 005584 467 KDRSEECFKPKQIWAIYDEDDGMPRLYCLIRQIISIKPFKI 507 (689)
Q Consensus 467 ~~R~~~~F~~gQiWA~Yd~~D~mPr~Ya~I~kv~~~~~f~l 507 (689)
.|.+|+.|++|+|-++|-.+|+ ||+|-|+ |.++.|..+
T Consensus 26 RD~SEShf~~g~vlrV~r~Ed~--~~fc~I~-vl~vspvtl 63 (106)
T COG3097 26 RDKSESHFKPGDVLRVGRFEDD--RYFCTIE-VLAVSPVTL 63 (106)
T ss_pred eccchhcCCCCCEEEEEEecCC--cEEEEEE-EEEeccEeh
Confidence 3579999999999999988776 8999997 446666443
No 104
>PRK05685 fliS flagellar protein FliS; Validated
Probab=55.14 E-value=40 Score=32.04 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCh
Q 005584 6 EEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGL 41 (689)
Q Consensus 6 ~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l 41 (689)
|.|++.+..|..++..+|+..+...+.||+.+.-.|
T Consensus 33 dgai~~l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL 68 (132)
T PRK05685 33 EGALSFLAQAKLAIEQGDIEAKGEYLSKAINIINGL 68 (132)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998876554
No 105
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=54.96 E-value=27 Score=27.82 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCh
Q 005584 6 EEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGL 41 (689)
Q Consensus 6 ~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l 41 (689)
+.+..+..++..++..++++.|...++++..++|+.
T Consensus 29 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 29 DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 355667777999999999999999999999999974
No 106
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=53.97 E-value=7.2 Score=37.70 Aligned_cols=37 Identities=16% Similarity=0.520 Sum_probs=26.7
Q ss_pred EEEEeccccceeeeeeeecC----ceeeCCCCCCceEEEec
Q 005584 170 FWTVCTSCKVQYEYLRKYVN----KRLSCKNCRGTFIAVET 206 (689)
Q Consensus 170 Fwt~C~~C~~~yey~r~yln----~~l~C~~C~g~F~A~e~ 206 (689)
....|+.|+..|.+...... ....||.|++.....+-
T Consensus 98 ~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~~dn 138 (147)
T smart00531 98 AYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEEDDN 138 (147)
T ss_pred cEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEEcCc
Confidence 35789999999987543221 23899999998876543
No 107
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=53.90 E-value=17 Score=28.52 Aligned_cols=31 Identities=29% Similarity=0.699 Sum_probs=24.2
Q ss_pred eEEEEeccccceeeeeeeec-CceeeCCCCCC
Q 005584 169 TFWTVCTSCKVQYEYLRKYV-NKRLSCKNCRG 199 (689)
Q Consensus 169 tFwt~C~~C~~~yey~r~yl-n~~l~C~~C~g 199 (689)
.|...|..|+..|+..+..- ...+.||.|+.
T Consensus 3 ~Yey~C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 3 IYEYRCTACGHRFEVLQKMSDDPLATCPECGG 34 (52)
T ss_pred CEEEEeCCCCCEeEEEEecCCCCCCCCCCCCC
Confidence 57788999999999876543 24578999997
No 108
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=53.77 E-value=89 Score=29.08 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 005584 10 RAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFE 52 (689)
Q Consensus 10 r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~ 52 (689)
.+..+++..+..+++..|.+.+.++..++|-.+.+.+.+..+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~ 106 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRAL 106 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3455677888999999999999999999999998877666543
No 109
>PRK11827 hypothetical protein; Provisional
Probab=52.66 E-value=9.7 Score=31.68 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=22.3
Q ss_pred EEeccccceeeeeeeecCceeeCCCCCCceE
Q 005584 172 TVCTSCKVQYEYLRKYVNKRLSCKNCRGTFI 202 (689)
Q Consensus 172 t~C~~C~~~yey~r~yln~~l~C~~C~g~F~ 202 (689)
-+||.|++...|... ...+.|..|+..|.
T Consensus 9 LaCP~ckg~L~~~~~--~~~Lic~~~~laYP 37 (60)
T PRK11827 9 IACPVCNGKLWYNQE--KQELICKLDNLAFP 37 (60)
T ss_pred eECCCCCCcCeEcCC--CCeEECCccCeecc
Confidence 579999999988542 46789999986544
No 110
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=52.32 E-value=11 Score=28.56 Aligned_cols=30 Identities=23% Similarity=0.508 Sum_probs=18.8
Q ss_pred eccccceeeeeeeecCceeeCCCCCCceEE
Q 005584 174 CTSCKVQYEYLRKYVNKRLSCKNCRGTFIA 203 (689)
Q Consensus 174 C~~C~~~yey~r~yln~~l~C~~C~g~F~A 203 (689)
||+|+...+-.+..--..-.|++|+|.++-
T Consensus 2 CP~C~~~l~~~~~~~~~id~C~~C~G~W~d 31 (41)
T PF13453_consen 2 CPRCGTELEPVRLGDVEIDVCPSCGGIWFD 31 (41)
T ss_pred cCCCCcccceEEECCEEEEECCCCCeEEcc
Confidence 888987544322222234569999997764
No 111
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=52.17 E-value=53 Score=35.70 Aligned_cols=39 Identities=23% Similarity=0.115 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChH
Q 005584 4 NIEEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLE 42 (689)
Q Consensus 4 n~~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~ 42 (689)
++..|++++.-..++|.+++|..|+..+.+|..|.|...
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA 115 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA 115 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc
Confidence 688999999999999999999999999999999999854
No 112
>PF14369 zf-RING_3: zinc-finger
Probab=52.14 E-value=15 Score=27.19 Aligned_cols=28 Identities=21% Similarity=0.687 Sum_probs=17.9
Q ss_pred eccccceeeeeeeecCceeeCCCCCCceE
Q 005584 174 CTSCKVQYEYLRKYVNKRLSCKNCRGTFI 202 (689)
Q Consensus 174 C~~C~~~yey~r~yln~~l~C~~C~g~F~ 202 (689)
|-.|......... ....+.||.|++.|+
T Consensus 5 Ch~C~~~V~~~~~-~~~~~~CP~C~~gFv 32 (35)
T PF14369_consen 5 CHQCNRFVRIAPS-PDSDVACPRCHGGFV 32 (35)
T ss_pred CccCCCEeEeCcC-CCCCcCCcCCCCcEe
Confidence 6777776665332 122346999998886
No 113
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=51.96 E-value=14 Score=35.34 Aligned_cols=37 Identities=30% Similarity=0.688 Sum_probs=29.5
Q ss_pred ceEEEEeccccceeeeeeeecCceeeCCCCCCceEEE
Q 005584 168 DTFWTVCTSCKVQYEYLRKYVNKRLSCKNCRGTFIAV 204 (689)
Q Consensus 168 ~tFwt~C~~C~~~yey~r~yln~~l~C~~C~g~F~A~ 204 (689)
..++..|..|+..+...+..-.....|+.|+++|..+
T Consensus 120 ~~~~~~C~~C~~~~~r~~~~~~~~~~C~~C~~~l~~~ 156 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKRHRRSKRKRYRCGRCGGPLVQV 156 (157)
T ss_pred cceEEEcCCCCCEeeeecccchhhEECCCCCCEEEEc
Confidence 5789999999999877666633457899999988754
No 114
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=51.41 E-value=28 Score=21.76 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 005584 10 RAKEIAEKRFVEKDFAGAKNYALKAKMLCPG 40 (689)
Q Consensus 10 r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~ 40 (689)
-+..+|...+..+++..|...+.++..+.|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3466788999999999999999999888775
No 115
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=51.05 E-value=30 Score=27.60 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 005584 8 ALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVAT 50 (689)
Q Consensus 8 A~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~ 50 (689)
..-.+.+|+.++..++++.|+..+.++....|+.+.+..+++.
T Consensus 25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 25 PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4445678999999999999999999999999998777766653
No 116
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=50.45 E-value=7.9 Score=38.81 Aligned_cols=34 Identities=12% Similarity=0.585 Sum_probs=27.8
Q ss_pred EEEeccccceeeeeeeecCceeeCCCCCCceEEEe
Q 005584 171 WTVCTSCKVQYEYLRKYVNKRLSCKNCRGTFIAVE 205 (689)
Q Consensus 171 wt~C~~C~~~yey~r~yln~~l~C~~C~g~F~A~e 205 (689)
..+|+.|+.+|.+... ++..-.||.|++.+.-++
T Consensus 117 ~Y~Cp~C~~rytf~eA-~~~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 117 FFFCPNCHIRFTFDEA-MEYGFRCPQCGEMLEEYD 150 (178)
T ss_pred EEECCCCCcEEeHHHH-hhcCCcCCCCCCCCeecc
Confidence 4679999999998765 456789999999887754
No 117
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=47.49 E-value=76 Score=34.02 Aligned_cols=86 Identities=20% Similarity=0.309 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhhhhccCCcCchhhccCCCCCCHHHHHHHHHH
Q 005584 9 LRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYFASEIKCNGEIDYYSVLGLKPSANKEAVKKQYRK 88 (689)
Q Consensus 9 ~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~aa~~~~~~~~D~Y~ILgv~~~a~~~eIKkaYRk 88 (689)
..+....+..+..+||.+|...+...+++--.+.++..+ -++... -.+++.. ..+.+...+.+
T Consensus 128 ~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~-----~~L~~~-----L~e~~~~-------i~~~ld~~l~~ 190 (291)
T PF10475_consen 128 QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCV-----RHLSSQ-----LQETLEL-------IEEQLDSDLSK 190 (291)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHH-----HHHhHH-----HHHHHHH-------HHHHHHHHHHH
Confidence 344455677889999999999999888774333222111 111110 1123322 23567788888
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHHHhcCC
Q 005584 89 MAVLLHPDKNKCVGADGAFKLVSEAWTLLSDS 120 (689)
Q Consensus 89 Lal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~ 120 (689)
++..+.|+ .|..|.+||..|++.
T Consensus 191 ~~~~Fd~~---------~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 191 VCQDFDPD---------KYSKVQEAYQLLGKT 213 (291)
T ss_pred HHHhCCHH---------HHHHHHHHHHHHhhh
Confidence 88877666 678899999999864
No 118
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=47.13 E-value=7.4 Score=40.16 Aligned_cols=115 Identities=24% Similarity=0.256 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHH---HHHHH----HHHHHHHhhhh------------------
Q 005584 5 IEEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEG---IAQMV----ATFEVYFASEI------------------ 59 (689)
Q Consensus 5 ~~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~---i~q~l----~~~~v~~aa~~------------------ 59 (689)
..++.+++.++..+... ++..|.+.+.++...+++... +.... .+.+++.....
T Consensus 2 ~~d~~~~l~i~~~as~~-~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~ 80 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEE-DIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSF 80 (306)
T ss_pred cccHHHHhCccccccHH-HHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCC
Confidence 35788999999888888 999999999999999986554 11101 01112111100
Q ss_pred ------------hccCCcCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcchhhhc
Q 005584 60 ------------KCNGEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYD 127 (689)
Q Consensus 60 ------------~~~~~~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR~~YD 127 (689)
......+||++||+....+.. .+.|+ |++..++ ...|..+..+...|.++ .|..||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 148 (306)
T KOG0714|consen 81 SSSFTSELFYFLFRKPDKDFYEFFGVSSPFSGS--KKGYR--------DKNAAPG-EEAFKSEGKAFQSLYGP-KRKQYD 148 (306)
T ss_pred CCCCCCCcceeccCchhhhHHHHhCCCCCCccc--cccCC--------ccccccC-ccccccccccccccCCC-cccccc
Confidence 000134588888876655443 44444 6666666 77788888889999999 999998
Q ss_pred ccccc
Q 005584 128 LKRSK 132 (689)
Q Consensus 128 ~~~~~ 132 (689)
.....
T Consensus 149 ~~~~~ 153 (306)
T KOG0714|consen 149 SSGSD 153 (306)
T ss_pred ccccc
Confidence 87543
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=46.66 E-value=1.1e+02 Score=30.70 Aligned_cols=45 Identities=16% Similarity=0.022 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 005584 6 EEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVAT 50 (689)
Q Consensus 6 ~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~ 50 (689)
+.+..+..++...+..++++.|...+.+|.++.|+...+...++.
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456678888999999999999999999999999988766544443
No 120
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=46.04 E-value=9.5 Score=37.47 Aligned_cols=34 Identities=12% Similarity=0.489 Sum_probs=27.1
Q ss_pred EEEeccccceeeeeeeecCceeeCCCCCCceEEEe
Q 005584 171 WTVCTSCKVQYEYLRKYVNKRLSCKNCRGTFIAVE 205 (689)
Q Consensus 171 wt~C~~C~~~yey~r~yln~~l~C~~C~g~F~A~e 205 (689)
..+|+.|+.+|.+.... +..-.||.|++++.-++
T Consensus 109 ~Y~Cp~c~~r~tf~eA~-~~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 109 FFICPNMCVRFTFNEAM-ELNFTCPRCGAMLDYLD 142 (158)
T ss_pred eEECCCCCcEeeHHHHH-HcCCcCCCCCCEeeecc
Confidence 46799999999886665 35688999999877654
No 121
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=45.19 E-value=28 Score=28.22 Aligned_cols=46 Identities=15% Similarity=0.015 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 005584 4 NIEEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVA 49 (689)
Q Consensus 4 n~~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~ 49 (689)
+-+...-+...|...+..+++.+|.+.+.++..+.|+...+..+..
T Consensus 25 ~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 25 DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 3445666677899999999999999999999999998776655543
No 122
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=44.91 E-value=44 Score=24.06 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 005584 11 AKEIAEKRFVEKDFAGAKNYALKAKMLC 38 (689)
Q Consensus 11 ~~~iAe~~l~~~D~~gA~~~a~kA~~l~ 38 (689)
+..+|..+...++++.|..++.+|..+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4678999999999999999999976554
No 123
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=44.84 E-value=72 Score=29.06 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 005584 5 IEEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVAT 50 (689)
Q Consensus 5 ~~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~ 50 (689)
++.|.++...+-..+.+||+..|.+.+.++.+. .+.+.+..++++
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~-~~~~~l~~L~AA 100 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL-SDNPLLNYLLAA 100 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHHH
Confidence 456888999999999999999999999999877 444556655544
No 124
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=44.00 E-value=42 Score=37.77 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 005584 10 RAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVAT 50 (689)
Q Consensus 10 r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~ 50 (689)
.+..++++++..++|+.|+.+++||+.+.|+-..|..-|..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34444555555555555555555555555555444433333
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=42.61 E-value=1.8e+02 Score=30.29 Aligned_cols=37 Identities=8% Similarity=-0.081 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHH
Q 005584 8 ALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGI 44 (689)
Q Consensus 8 A~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i 44 (689)
+......|...+..+++..|...+.++...+|.-+-+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a 68 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYS 68 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH
Confidence 4455667777777777777777777777777765433
No 126
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=41.37 E-value=45 Score=34.32 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=38.7
Q ss_pred eecCCCCCCCCCCccCccCCCCCCEEEeecCCCCCCcceeEEEEEee--------cCCcEEEEEec
Q 005584 455 ITVPDPDFHDFDKDRSEECFKPKQIWAIYDEDDGMPRLYCLIRQIIS--------IKPFKILITYL 512 (689)
Q Consensus 455 ~~~pd~df~dFd~~R~~~~F~~gQiWA~Yd~~D~mPr~Ya~I~kv~~--------~~~f~l~i~wL 512 (689)
+.|-.|++++|+. |....|..| .+.++.|-+-|||..|.. ...++|+|.|+
T Consensus 13 ~VYv~p~~f~~~~-~~~~~~~~G------~N~~~~p~~I~qI~ei~~~k~~~~~~~~~~~vrVrwF 71 (202)
T cd04708 13 FLYVSPDAFAEEE-RERATFKAG------RNVGLKAFVVCQVLEIVVEKESKQADVASTQVKVRRF 71 (202)
T ss_pred eEEECcccccccc-ccccccccc------ccCCCCCcEEEEEEEEEecccCCCCCCcceEEEEEEE
Confidence 6788899999986 667777777 356677777788888752 12579999998
No 127
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=40.80 E-value=21 Score=29.73 Aligned_cols=30 Identities=23% Similarity=0.582 Sum_probs=23.6
Q ss_pred EEeccccceeeeeeeecCceeeCCCCCCceEE
Q 005584 172 TVCTSCKVQYEYLRKYVNKRLSCKNCRGTFIA 203 (689)
Q Consensus 172 t~C~~C~~~yey~r~yln~~l~C~~C~g~F~A 203 (689)
-+||-|++...|.+. +..+.|+.|+..|--
T Consensus 9 LaCP~~kg~L~~~~~--~~~L~c~~~~~aYpI 38 (60)
T COG2835 9 LACPVCKGPLVYDEE--KQELICPRCKLAYPI 38 (60)
T ss_pred eeccCcCCcceEecc--CCEEEecccCceeec
Confidence 479999999877665 568999999976654
No 128
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=40.20 E-value=59 Score=35.83 Aligned_cols=82 Identities=21% Similarity=0.093 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhhhhccCCcCchhhccCCCCCCH--HHHHH
Q 005584 7 EALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYFASEIKCNGEIDYYSVLGLKPSANK--EAVKK 84 (689)
Q Consensus 7 eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~aa~~~~~~~~D~Y~ILgv~~~a~~--~eIKk 84 (689)
.+..+..+|..++..+++..|+.++.+|..+.|....+...+..+...+ ...-.....|-..|.+.++-.. ..|.+
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l--g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL--EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4566778899999999999999999999999998766654444433322 1111112344455666664322 23455
Q ss_pred HHHHHH
Q 005584 85 QYRKMA 90 (689)
Q Consensus 85 aYRkLa 90 (689)
...+|.
T Consensus 113 ~~~kl~ 118 (356)
T PLN03088 113 CDEKIA 118 (356)
T ss_pred HHHHHH
Confidence 555553
No 129
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=40.01 E-value=24 Score=29.27 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=24.4
Q ss_pred CcceEEEEeccccceeeeeeeecC---ceeeCCCCCC
Q 005584 166 RIDTFWTVCTSCKVQYEYLRKYVN---KRLSCKNCRG 199 (689)
Q Consensus 166 ~~~tFwt~C~~C~~~yey~r~yln---~~l~C~~C~g 199 (689)
...+|...| -|+.++++....+. ...+||+|+-
T Consensus 17 e~~~ftyPC-PCGDRFeIsLeDl~~GE~VArCPSCSL 52 (67)
T COG5216 17 EEKTFTYPC-PCGDRFEISLEDLRNGEVVARCPSCSL 52 (67)
T ss_pred CCceEEecC-CCCCEeEEEHHHhhCCceEEEcCCceE
Confidence 345777777 69999998766543 3578999984
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=39.07 E-value=1.2e+02 Score=27.30 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 005584 4 NIEEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVA 49 (689)
Q Consensus 4 n~~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~ 49 (689)
+.+.+.....+|...+..+++..|...+.++..++|....+...+.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 58 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLA 58 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4456667788899999999999999999999999998765554444
No 131
>KOG2923 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.80 E-value=15 Score=30.91 Aligned_cols=33 Identities=15% Similarity=0.475 Sum_probs=25.2
Q ss_pred CcceEEEEeccccceeeeeeeecC---ceeeCCCCCC
Q 005584 166 RIDTFWTVCTSCKVQYEYLRKYVN---KRLSCKNCRG 199 (689)
Q Consensus 166 ~~~tFwt~C~~C~~~yey~r~yln---~~l~C~~C~g 199 (689)
...+|..-| .|+.+|++....|. ...+|++|+-
T Consensus 17 e~~~y~yPC-pCGDrf~It~edL~~ge~Va~CpsCSL 52 (67)
T KOG2923|consen 17 ENQTYYYPC-PCGDRFQITLEDLENGEDVARCPSCSL 52 (67)
T ss_pred CCCeEEcCC-CCCCeeeecHHHHhCCCeeecCCCceE
Confidence 345677777 79999999887654 3588999985
No 132
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=37.73 E-value=30 Score=33.23 Aligned_cols=36 Identities=31% Similarity=0.662 Sum_probs=29.6
Q ss_pred ceEEEEeccccceeeeeeeecC-ceeeCCCCCCceEE
Q 005584 168 DTFWTVCTSCKVQYEYLRKYVN-KRLSCKNCRGTFIA 203 (689)
Q Consensus 168 ~tFwt~C~~C~~~yey~r~yln-~~l~C~~C~g~F~A 203 (689)
.+|...|..|+..+...+...+ ...+|..|++.|..
T Consensus 109 ~~~~y~C~~C~~~~~~~rr~~~~~~y~C~~C~g~l~~ 145 (146)
T smart00731 109 KKYPYRCTGCGQRYLRVRRSNNVSRYRCGKCGGKLIL 145 (146)
T ss_pred ceEEEECCCCCCCCceEccccCcceEEcCCCCCEEEe
Confidence 4788999999998877777666 77999999998763
No 133
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=37.21 E-value=18 Score=26.92 Aligned_cols=30 Identities=23% Similarity=0.564 Sum_probs=17.8
Q ss_pred EeccccceeeeeeeecCceeeCCCCCCceE
Q 005584 173 VCTSCKVQYEYLRKYVNKRLSCKNCRGTFI 202 (689)
Q Consensus 173 ~C~~C~~~yey~r~yln~~l~C~~C~g~F~ 202 (689)
+|+.|+..|...-.--.....|..|++.++
T Consensus 3 ~C~~Cg~~Yh~~~~pP~~~~~Cd~cg~~L~ 32 (36)
T PF05191_consen 3 ICPKCGRIYHIEFNPPKVEGVCDNCGGELV 32 (36)
T ss_dssp EETTTTEEEETTTB--SSTTBCTTTTEBEB
T ss_pred CcCCCCCccccccCCCCCCCccCCCCCeeE
Confidence 577887777653333334466777776554
No 134
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.08 E-value=2e+02 Score=25.42 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCh
Q 005584 4 NIEEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGL 41 (689)
Q Consensus 4 n~~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l 41 (689)
|-++......+|+..+..+++++|...++.+.+-++..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 34556677888999999999999999999999999876
No 135
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=36.25 E-value=80 Score=22.30 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCh
Q 005584 8 ALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGL 41 (689)
Q Consensus 8 A~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l 41 (689)
|..+-.+|..++..+++..|+.++.++..+.-.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 4456778999999999999999999997765443
No 136
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=35.92 E-value=80 Score=29.94 Aligned_cols=45 Identities=16% Similarity=0.016 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 005584 6 EEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVAT 50 (689)
Q Consensus 6 ~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~ 50 (689)
..+..+..+|......+++..|...+.+|..+.|........+..
T Consensus 56 ~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 56 WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 345667788999999999999999999999999987655444443
No 137
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=35.87 E-value=1.5e+02 Score=35.60 Aligned_cols=111 Identities=7% Similarity=-0.016 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHH----------hhhhhcc-CCcCchhhcc--CCCCC
Q 005584 11 AKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYF----------ASEIKCN-GEIDYYSVLG--LKPSA 77 (689)
Q Consensus 11 ~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~----------aa~~~~~-~~~D~Y~ILg--v~~~a 77 (689)
...+|..++..++++.|...+++|..+.|....+...+..+.... ......+ ....++-.++ +...-
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G 366 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAG 366 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCC
Confidence 344566778889999999999999999998776554444321110 0000111 1112221111 11122
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhcCCcch
Q 005584 78 NKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKR 123 (689)
Q Consensus 78 ~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLsD~~kR 123 (689)
..++-.+.|++ ++..+|+..+. .-.++-..+.+|++.+..+.+|
T Consensus 367 ~~deA~~~l~~-al~~~P~~~~~-~~~ea~~~~~~~~~~~~~~~~~ 410 (656)
T PRK15174 367 KTSEAESVFEH-YIQARASHLPQ-SFEEGLLALDGQISAVNLPPER 410 (656)
T ss_pred CHHHHHHHHHH-HHHhChhhchh-hHHHHHHHHHHHHHhcCCccch
Confidence 34444555555 56678886543 3346778888899988888766
No 138
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.59 E-value=1.2e+02 Score=33.44 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhhh-hccCCcCchhhccCCCCCCHH
Q 005584 3 ANIEEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYFASEI-KCNGEIDYYSVLGLKPSANKE 80 (689)
Q Consensus 3 ~n~~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~aa~~-~~~~~~D~Y~ILgv~~~a~~~ 80 (689)
.|.-||..|+..|......|..+.|.+++..|..|.|..+.+. ...-....... -+....-|.+-|-++|.-+++
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L---~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQIL---IEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHH---HHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3677999999999999999999999999999999999876543 22211111111 111223355667777755443
No 139
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=34.64 E-value=66 Score=25.02 Aligned_cols=33 Identities=15% Similarity=0.422 Sum_probs=25.7
Q ss_pred EEEeccccceeeeeeeecCceeeCCCCCCceEEEec
Q 005584 171 WTVCTSCKVQYEYLRKYVNKRLSCKNCRGTFIAVET 206 (689)
Q Consensus 171 wt~C~~C~~~yey~r~yln~~l~C~~C~g~F~A~e~ 206 (689)
..+|..|+..++.. ....+.|+.|+...+-.+-
T Consensus 2 ~Y~C~~Cg~~~~~~---~~~~irC~~CG~rIlyK~R 34 (44)
T smart00659 2 IYICGECGRENEIK---SKDVVRCRECGYRILYKKR 34 (44)
T ss_pred EEECCCCCCEeecC---CCCceECCCCCceEEEEeC
Confidence 36799999988875 4578999999987775543
No 140
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=34.47 E-value=34 Score=32.82 Aligned_cols=33 Identities=18% Similarity=0.412 Sum_probs=25.8
Q ss_pred EEEeccccce-eeeeeeecCceeeCCCCCCceEEEecCC
Q 005584 171 WTVCTSCKVQ-YEYLRKYVNKRLSCKNCRGTFIAVETGA 208 (689)
Q Consensus 171 wt~C~~C~~~-yey~r~yln~~l~C~~C~g~F~A~e~~~ 208 (689)
-+.|+.|++. |++ +..+.||.|...+.-++...
T Consensus 28 ~~hCp~Cg~PLF~K-----dG~v~CPvC~~~~~~v~~e~ 61 (131)
T COG1645 28 AKHCPKCGTPLFRK-----DGEVFCPVCGYREVVVEEEE 61 (131)
T ss_pred HhhCcccCCcceee-----CCeEECCCCCceEEEeeccc
Confidence 3679999985 444 67899999998888877655
No 141
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=34.29 E-value=79 Score=32.27 Aligned_cols=38 Identities=11% Similarity=0.178 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhc
Q 005584 74 KPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLS 118 (689)
Q Consensus 74 ~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLs 118 (689)
+++|+.+||.+|+.+|..++--| ++.-..|..||+.+-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd-------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD-------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHHH
Confidence 47899999999999999988433 667788999997543
No 142
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=33.66 E-value=60 Score=40.32 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCh
Q 005584 6 EEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGL 41 (689)
Q Consensus 6 ~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l 41 (689)
+.++.++..|.-.+..+||.+|+.++++|.+..|..
T Consensus 162 ~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 162 DNILALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 356778899999999999999999999999999976
No 143
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=33.36 E-value=19 Score=33.36 Aligned_cols=17 Identities=18% Similarity=0.663 Sum_probs=7.5
Q ss_pred ceeeCCCCCCceEEEec
Q 005584 190 KRLSCKNCRGTFIAVET 206 (689)
Q Consensus 190 ~~l~C~~C~g~F~A~e~ 206 (689)
....|++|+..|+-.+.
T Consensus 8 tKR~Cp~CG~kFYDLnk 24 (108)
T PF09538_consen 8 TKRTCPSCGAKFYDLNK 24 (108)
T ss_pred CcccCCCCcchhccCCC
Confidence 33444444444444433
No 144
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=33.29 E-value=35 Score=26.00 Aligned_cols=25 Identities=24% Similarity=0.537 Sum_probs=19.4
Q ss_pred EeccccceeeeeeeecCceeeCCCCC
Q 005584 173 VCTSCKVQYEYLRKYVNKRLSCKNCR 198 (689)
Q Consensus 173 ~C~~C~~~yey~r~yln~~l~C~~C~ 198 (689)
.|+.|+... +...+-...+.|++|.
T Consensus 2 ~Cp~Cg~~~-~~~D~~~g~~vC~~CG 26 (43)
T PF08271_consen 2 KCPNCGSKE-IVFDPERGELVCPNCG 26 (43)
T ss_dssp SBTTTSSSE-EEEETTTTEEEETTT-
T ss_pred CCcCCcCCc-eEEcCCCCeEECCCCC
Confidence 599999987 5455677888999994
No 145
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=33.18 E-value=9.3 Score=41.69 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=25.3
Q ss_pred cceEEEEeccccceeeeeeeecCceeeCCCCCCce
Q 005584 167 IDTFWTVCTSCKVQYEYLRKYVNKRLSCKNCRGTF 201 (689)
Q Consensus 167 ~~tFwt~C~~C~~~yey~r~yln~~l~C~~C~g~F 201 (689)
.-..-|+|.+|.++|..... ....-+|+.|.|.+
T Consensus 242 GKY~~TAC~rC~t~y~le~A-~~~~wrCpkCGg~i 275 (403)
T COG1379 242 GKYHLTACSRCYTRYSLEEA-KSLRWRCPKCGGKI 275 (403)
T ss_pred cchhHHHHHHhhhccCcchh-hhhcccCcccccch
Confidence 34557999999999987443 34457899999854
No 146
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=32.75 E-value=67 Score=24.97 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 005584 12 KEIAEKRFVEKDFAGAKNYALKAKM 36 (689)
Q Consensus 12 ~~iAe~~l~~~D~~gA~~~a~kA~~ 36 (689)
+++|+.++..||.++|+..+.....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999998874
No 147
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=31.62 E-value=4.6e+02 Score=26.23 Aligned_cols=35 Identities=17% Similarity=0.018 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCh
Q 005584 7 EALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGL 41 (689)
Q Consensus 7 eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l 41 (689)
.+..+...|...|..|++..|...+.+....+|.-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s 38 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS 38 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 45566677777777777777777777777777753
No 148
>PTZ00043 cytochrome c oxidase subunit; Provisional
Probab=31.40 E-value=3.1e+02 Score=28.86 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHhc
Q 005584 79 KEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLS 118 (689)
Q Consensus 79 ~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I~eAy~vLs 118 (689)
+.-++|.|++||+-+-=--. ....+-+..+-+-|++|.
T Consensus 95 ~~l~~ksykqla~d~gmqi~--~~~~~hm~~~le~y~~Lk 132 (268)
T PTZ00043 95 ETLPKKSYKQLARDMGMQIV--NEPSEHMLGLLELYEYLK 132 (268)
T ss_pred hhcchHHHHHHHHHhCceec--CCchHHHHHHHHHHHhcC
Confidence 44589999999996533221 133566777888898885
No 149
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=31.29 E-value=16 Score=35.52 Aligned_cols=34 Identities=15% Similarity=0.438 Sum_probs=25.7
Q ss_pred EEeccccceeeeeeeecCc-----eeeCCCCCCceEEEe
Q 005584 172 TVCTSCKVQYEYLRKYVNK-----RLSCKNCRGTFIAVE 205 (689)
Q Consensus 172 t~C~~C~~~yey~r~yln~-----~l~C~~C~g~F~A~e 205 (689)
..|++|+....-....++. ..+|..|+.+|-++.
T Consensus 106 ~~cp~c~s~~t~~~s~fg~t~cka~~~c~~c~epf~~fk 144 (146)
T TIGR02159 106 VQCPRCGSADTTITSIFGPTACKALYRCRACKEPFEYFK 144 (146)
T ss_pred CcCCCCCCCCcEeecCCCChhhHHHhhhhhhCCcHhhcc
Confidence 6799999887655544443 378999999998764
No 150
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=31.26 E-value=76 Score=27.59 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=31.3
Q ss_pred cCchhhccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLV 110 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYRkLal~~HPDK~~~~~a~~~f~~I 110 (689)
+|.-.+.+++|-|+..||+.+-++..+++.=-..++....++|..-
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~A 48 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAA 48 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHH
Confidence 4555688999999999999998887777733333333345555443
No 151
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=31.09 E-value=51 Score=28.89 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhhC
Q 005584 14 IAEKRFVEKDFAGAKNYALKAKMLC 38 (689)
Q Consensus 14 iAe~~l~~~D~~gA~~~a~kA~~l~ 38 (689)
.++.+...||+++|++..++|+.+.
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKWS 67 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHHH
Confidence 3678999999999999999998764
No 152
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=30.76 E-value=72 Score=25.60 Aligned_cols=36 Identities=17% Similarity=0.419 Sum_probs=26.5
Q ss_pred eEEEEeccccceeeeeeeecCceeeCCCCCCceEEEec
Q 005584 169 TFWTVCTSCKVQYEYLRKYVNKRLSCKNCRGTFIAVET 206 (689)
Q Consensus 169 tFwt~C~~C~~~yey~r~yln~~l~C~~C~g~F~A~e~ 206 (689)
+....|..|+..++. ......++|+.|+.-.+-.+.
T Consensus 4 ~~~Y~C~~Cg~~~~~--~~~~~~irCp~Cg~rIl~K~R 39 (49)
T COG1996 4 MMEYKCARCGREVEL--DQETRGIRCPYCGSRILVKER 39 (49)
T ss_pred eEEEEhhhcCCeeeh--hhccCceeCCCCCcEEEEecc
Confidence 456789999999953 234677999999976665443
No 153
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=30.25 E-value=8 Score=38.88 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCCEEEeecCCCCCCcceeEEEEEe
Q 005584 476 PKQIWAIYDEDDGMPRLYCLIRQII 500 (689)
Q Consensus 476 ~gQiWA~Yd~~D~mPr~Ya~I~kv~ 500 (689)
..|||+++-|..+||++.-+|+.|.
T Consensus 82 ae~vy~~W~dLe~lP~~Mkhl~SVk 106 (217)
T COG5637 82 AEQVYAYWRDLENLPLWMKHLDSVK 106 (217)
T ss_pred HHHHHHHHHhhhhhhHHHHhhceee
Confidence 3699999999999999999999884
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=30.17 E-value=1.9e+02 Score=22.22 Aligned_cols=32 Identities=22% Similarity=0.180 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCCChH
Q 005584 11 AKEIAEKRFVEKDFAGAKNYALKAKMLCPGLE 42 (689)
Q Consensus 11 ~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~ 42 (689)
+..+|...+..+++..|...+.++.++.|...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 34 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA 34 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH
Confidence 45678888999999999999999999999865
No 155
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=29.16 E-value=19 Score=38.97 Aligned_cols=35 Identities=23% Similarity=0.561 Sum_probs=23.7
Q ss_pred cceEEEEeccccceeeeeeeecCceeeCCCCCCceE
Q 005584 167 IDTFWTVCTSCKVQYEYLRKYVNKRLSCKNCRGTFI 202 (689)
Q Consensus 167 ~~tFwt~C~~C~~~yey~r~yln~~l~C~~C~g~F~ 202 (689)
+...|+.|+.|+... |.+......-.|+.|...|-
T Consensus 23 ~~~~~~~c~~c~~~~-~~~~l~~~~~vc~~c~~h~r 57 (292)
T PRK05654 23 PEGLWTKCPSCGQVL-YRKELEANLNVCPKCGHHMR 57 (292)
T ss_pred CCCCeeECCCccchh-hHHHHHhcCCCCCCCCCCee
Confidence 455799999998764 32333223358999998664
No 156
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=29.13 E-value=19 Score=38.99 Aligned_cols=36 Identities=19% Similarity=0.490 Sum_probs=24.0
Q ss_pred CcceEEEEeccccceeeeeeeecCceeeCCCCCCceE
Q 005584 166 RIDTFWTVCTSCKVQYEYLRKYVNKRLSCKNCRGTFI 202 (689)
Q Consensus 166 ~~~tFwt~C~~C~~~yey~r~yln~~l~C~~C~g~F~ 202 (689)
.+...|+.|+.|+... |...+....-.|+.|...|-
T Consensus 33 ~p~~lw~kc~~C~~~~-~~~~l~~~~~vcp~c~~h~r 68 (296)
T CHL00174 33 KYKHLWVQCENCYGLN-YKKFLKSKMNICEQCGYHLK 68 (296)
T ss_pred CCCCCeeECCCccchh-hHHHHHHcCCCCCCCCCCcC
Confidence 3455799999998764 32333333468999997554
No 157
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=29.12 E-value=99 Score=28.82 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC-C----ChHHHHHHHHHHHHHhcCC
Q 005584 76 SANKEAVKKQYRKMAVLLHPDKNKC-V----GADGAFKLVSEAWTLLSDS 120 (689)
Q Consensus 76 ~a~~~eIKkaYRkLal~~HPDK~~~-~----~a~~~f~~I~eAy~vLsD~ 120 (689)
..+..+++.+.|.+-+..|||.-.. | ..++.++.++.-.+.|..+
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 4566789999999999999997533 2 3466788888888877643
No 158
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=28.31 E-value=21 Score=38.53 Aligned_cols=35 Identities=20% Similarity=0.545 Sum_probs=23.8
Q ss_pred cceEEEEeccccceeeeeeeecCceeeCCCCCCceE
Q 005584 167 IDTFWTVCTSCKVQYEYLRKYVNKRLSCKNCRGTFI 202 (689)
Q Consensus 167 ~~tFwt~C~~C~~~yey~r~yln~~l~C~~C~g~F~ 202 (689)
+...|+.|+.|+... |........-.|+.|...|-
T Consensus 22 ~~~~~~~c~~c~~~~-~~~~l~~~~~vc~~c~~h~r 56 (285)
T TIGR00515 22 PEGVWTKCPKCGQVL-YTKELERNLEVCPKCDHHMR 56 (285)
T ss_pred CCCCeeECCCCcchh-hHHHHHhhCCCCCCCCCcCc
Confidence 345799999998765 32333333468999987654
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=27.62 E-value=3.9e+02 Score=22.86 Aligned_cols=34 Identities=15% Similarity=-0.079 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCh
Q 005584 8 ALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGL 41 (689)
Q Consensus 8 A~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l 41 (689)
+.-....|...+..+++..|...+.++.+.+|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 35 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS 35 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 3456788999999999999999999999999864
No 160
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=27.47 E-value=30 Score=37.12 Aligned_cols=34 Identities=24% Similarity=0.622 Sum_probs=24.8
Q ss_pred cceEEEEeccccceeeeeeeecCceeeCCCCCCce
Q 005584 167 IDTFWTVCTSCKVQYEYLRKYVNKRLSCKNCRGTF 201 (689)
Q Consensus 167 ~~tFwt~C~~C~~~yey~r~yln~~l~C~~C~g~F 201 (689)
+...|+-|+.|+... |..+.....-.|+.|...|
T Consensus 24 ~e~lw~KCp~c~~~~-y~~eL~~n~~vcp~c~~h~ 57 (294)
T COG0777 24 PEGLWTKCPSCGEML-YRKELESNLKVCPKCGHHM 57 (294)
T ss_pred CCCceeECCCcccee-eHHHHHhhhhcccccCccc
Confidence 367899999998654 4444445567899998644
No 161
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=27.07 E-value=1.1e+02 Score=34.61 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhhhhccCCcCchhhccCCCCCCHHHHHHHHHHHHH
Q 005584 12 KEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYFASEIKCNGEIDYYSVLGLKPSANKEAVKKQYRKMAV 91 (689)
Q Consensus 12 ~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~aa~~~~~~~~D~Y~ILgv~~~a~~~eIKkaYRkLal 91 (689)
+.+|-.++..+++..|+....++..+.|.-. .-|......+++...--....||-.+|.|.|.- .+|+.+..+|..
T Consensus 261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~--KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N--ka~~~el~~l~~ 336 (397)
T KOG0543|consen 261 LNLAACYLKLKEYKEAIESCNKVLELDPNNV--KALYRRGQALLALGEYDLARDDFQKALKLEPSN--KAARAELIKLKQ 336 (397)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCCch--hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH
Confidence 4678889999999999999999999999742 233333333332222112245777788887754 667777666665
Q ss_pred Hh
Q 005584 92 LL 93 (689)
Q Consensus 92 ~~ 93 (689)
+.
T Consensus 337 k~ 338 (397)
T KOG0543|consen 337 KI 338 (397)
T ss_pred HH
Confidence 44
No 162
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=27.04 E-value=39 Score=24.30 Aligned_cols=24 Identities=29% Similarity=0.724 Sum_probs=13.2
Q ss_pred EeccccceeeeeeeecCceeeCCCCCC
Q 005584 173 VCTSCKVQYEYLRKYVNKRLSCKNCRG 199 (689)
Q Consensus 173 ~C~~C~~~yey~r~yln~~l~C~~C~g 199 (689)
.|+.|...|.| .-+..+.|+.|..
T Consensus 4 ~Cp~C~se~~y---~D~~~~vCp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY---EDGELLVCPECGH 27 (30)
T ss_dssp --TTT-----E---E-SSSEEETTTTE
T ss_pred CCCCCCCccee---ccCCEEeCCcccc
Confidence 59999999999 3467789999974
No 163
>smart00439 BAH Bromo adjacent homology domain.
Probab=26.27 E-value=1.6e+02 Score=26.36 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=26.5
Q ss_pred CCCCCEEEeecCCCCCCcceeEEEEEeecCC---cEEEEEeccc
Q 005584 474 FKPKQIWAIYDEDDGMPRLYCLIRQIISIKP---FKILITYLSS 514 (689)
Q Consensus 474 F~~gQiWA~Yd~~D~mPr~Ya~I~kv~~~~~---f~l~i~wLe~ 514 (689)
|++|+.=-+=.++..-|.+.|+|.+|..... ..+++.|+-.
T Consensus 2 ~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~~~~~~~v~Wf~r 45 (120)
T smart00439 2 IRVGDFVLVEPDDADEPYYIGRIEEIFETKKNSEKMVRVRWFYR 45 (120)
T ss_pred cccCCEEEEeCCCCCCCCEEEEEEEEEECCCCCEEEEEEEEEEC
Confidence 3455542222223357999999999975433 6899999843
No 164
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=26.05 E-value=1.2e+02 Score=27.09 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q 005584 6 EEALRAKEIAEKRFVEKDFAGAKNYALKAKML 37 (689)
Q Consensus 6 ~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l 37 (689)
.+|...+..|+..+..++|..|..++..|+..
T Consensus 43 ~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~ 74 (103)
T PF14346_consen 43 KEAREKLQRAKAALDDGDYERARRLAEQAQAD 74 (103)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46888899999999999999999999999766
No 165
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.81 E-value=2.1e+02 Score=31.04 Aligned_cols=52 Identities=15% Similarity=-0.113 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHh
Q 005584 5 IEEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYFA 56 (689)
Q Consensus 5 ~~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~a 56 (689)
-.+++.|.-+++..|..+++..|..-+.+|.+|.|.-+.+.-.+..+.++.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a 204 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA 204 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 3467888999999999999999999999999999998776656655555543
No 166
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=25.72 E-value=30 Score=28.96 Aligned_cols=18 Identities=22% Similarity=0.541 Sum_probs=14.7
Q ss_pred eecCceeeCCCCCCceEE
Q 005584 186 KYVNKRLSCKNCRGTFIA 203 (689)
Q Consensus 186 ~yln~~l~C~~C~g~F~A 203 (689)
..+...+.|++|++.|.-
T Consensus 48 ~i~eg~L~Cp~c~r~YPI 65 (68)
T PF03966_consen 48 EIVEGELICPECGREYPI 65 (68)
T ss_dssp ETTTTEEEETTTTEEEEE
T ss_pred cccCCEEEcCCCCCEEeC
Confidence 567788999999988764
No 167
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=25.38 E-value=2.2e+02 Score=27.79 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 005584 8 ALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPG 40 (689)
Q Consensus 8 A~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~ 40 (689)
+..+...|+..|..++|..|.+.+.....-+|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~ 42 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF 42 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 345566677777777777777777777777775
No 168
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.94 E-value=1.4e+02 Score=31.09 Aligned_cols=37 Identities=22% Similarity=0.100 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 005584 4 NIEEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPG 40 (689)
Q Consensus 4 n~~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~ 40 (689)
+|--..-..++|+.++..+|++.|.+++.++...|..
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~ 210 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR 210 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 4455566779999999999999999999999888764
No 169
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=24.80 E-value=2.3e+02 Score=25.50 Aligned_cols=44 Identities=16% Similarity=-0.066 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 005584 7 EALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVAT 50 (689)
Q Consensus 7 eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~ 50 (689)
...-+..+|...+..++++.|..++.++..+.|........+..
T Consensus 50 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~ 93 (135)
T TIGR02552 50 NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAE 93 (135)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34556677888999999999999999999999987655544444
No 170
>PRK10220 hypothetical protein; Provisional
Probab=24.69 E-value=45 Score=30.98 Aligned_cols=30 Identities=27% Similarity=0.664 Sum_probs=23.5
Q ss_pred EeccccceeeeeeeecCceeeCCCCCCceEEEe
Q 005584 173 VCTSCKVQYEYLRKYVNKRLSCKNCRGTFIAVE 205 (689)
Q Consensus 173 ~C~~C~~~yey~r~yln~~l~C~~C~g~F~A~e 205 (689)
.||.|...|.|.. ...+.|+.|...+.+-+
T Consensus 5 ~CP~C~seytY~d---~~~~vCpeC~hEW~~~~ 34 (111)
T PRK10220 5 HCPKCNSEYTYED---NGMYICPECAHEWNDAE 34 (111)
T ss_pred cCCCCCCcceEcC---CCeEECCcccCcCCccc
Confidence 5999999999954 45689999997665543
No 171
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.15 E-value=1.2e+02 Score=35.43 Aligned_cols=49 Identities=24% Similarity=0.172 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q 005584 6 EEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVY 54 (689)
Q Consensus 6 ~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~ 54 (689)
..|..++....+.+.++.|+.|++++.+|..++|.-+-..+-+++|.+.
T Consensus 113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~ 161 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYES 161 (606)
T ss_pred HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHH
Confidence 4688889999999999999999999999999999865555556665543
No 172
>PF14353 CpXC: CpXC protein
Probab=23.58 E-value=68 Score=29.93 Aligned_cols=30 Identities=23% Similarity=0.640 Sum_probs=20.0
Q ss_pred Eeccccceeeeeee-ecC----------------ceeeCCCCCCceE
Q 005584 173 VCTSCKVQYEYLRK-YVN----------------KRLSCKNCRGTFI 202 (689)
Q Consensus 173 ~C~~C~~~yey~r~-yln----------------~~l~C~~C~g~F~ 202 (689)
.||.|+..+++..- .++ ....||+|+..|.
T Consensus 3 tCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 3 TCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 59999887765332 122 1377999998775
No 173
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.51 E-value=2.5e+02 Score=32.88 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHH
Q 005584 6 EEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGI 44 (689)
Q Consensus 6 ~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i 44 (689)
+-|...+......|..+||..|.+.+-+|....|+...+
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 335555666777777777777777777777777775443
No 174
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=23.29 E-value=59 Score=33.00 Aligned_cols=28 Identities=21% Similarity=0.646 Sum_probs=22.5
Q ss_pred ceEEEEeccccceeeeeeeecCceeeCCCCCC
Q 005584 168 DTFWTVCTSCKVQYEYLRKYVNKRLSCKNCRG 199 (689)
Q Consensus 168 ~tFwt~C~~C~~~yey~r~yln~~l~C~~C~g 199 (689)
....-.|++|+....+ ....+.||+|..
T Consensus 146 GVI~A~CsrC~~~L~~----~~~~l~Cp~Cg~ 173 (188)
T COG1096 146 GVIYARCSRCRAPLVK----KGNMLKCPNCGN 173 (188)
T ss_pred eEEEEEccCCCcceEE----cCcEEECCCCCC
Confidence 3446789999998877 578899999985
No 175
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=23.24 E-value=97 Score=20.74 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Q 005584 10 RAKEIAEKRFVEKDFAGAKNYAL 32 (689)
Q Consensus 10 r~~~iAe~~l~~~D~~gA~~~a~ 32 (689)
....+|..++..||+++|++.++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677999999999999998875
No 176
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=22.90 E-value=1.1e+02 Score=28.91 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCh
Q 005584 6 EEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGL 41 (689)
Q Consensus 6 ~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l 41 (689)
|.|++.+..|..++..+|+..+.....||+.+.-.|
T Consensus 29 dg~i~~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL 64 (124)
T TIGR00208 29 NGCLKFIRLAAQAIENDDIERKNENLIKAQNIIQEL 64 (124)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998876544
No 177
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=22.81 E-value=2.3e+02 Score=30.50 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhhhhhccCCcCchhhccCCCCCCHHHHHHHHHH
Q 005584 9 LRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVATFEVYFASEIKCNGEIDYYSVLGLKPSANKEAVKKQYRK 88 (689)
Q Consensus 9 ~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~~~v~~aa~~~~~~~~D~Y~ILgv~~~a~~~eIKkaYRk 88 (689)
.-+...|...|..++|..|...+..|...+|..+.+..-+.++..|. |- ..++-..|..
T Consensus 202 ~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~----------------gk-----~~~~~~~~l~ 260 (290)
T PF04733_consen 202 KLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL----------------GK-----PTEAAERYLS 260 (290)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT----------------T------TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh----------------CC-----ChhHHHHHHH
Confidence 33556899999999999999999999999998876544444443333 11 1234456777
Q ss_pred HHHHhCCCCC
Q 005584 89 MAVLLHPDKN 98 (689)
Q Consensus 89 Lal~~HPDK~ 98 (689)
..+..||++.
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 7777899863
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=22.51 E-value=8.9e+02 Score=25.18 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCCChHH
Q 005584 12 KEIAEKRFVEKDFAGAKNYALKAKMLCPGLEG 43 (689)
Q Consensus 12 ~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~ 43 (689)
+.+|..++..+|+..|...+.+..+++|+.+.
T Consensus 73 l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~ 104 (243)
T PRK10866 73 LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 104 (243)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence 45566666666666666666666666666543
No 179
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=22.46 E-value=43 Score=31.99 Aligned_cols=16 Identities=19% Similarity=0.443 Sum_probs=7.6
Q ss_pred ceeeCCCCCCceEEEe
Q 005584 190 KRLSCKNCRGTFIAVE 205 (689)
Q Consensus 190 ~~l~C~~C~g~F~A~e 205 (689)
....|++|...|+-.+
T Consensus 8 tKr~Cp~cg~kFYDLn 23 (129)
T TIGR02300 8 TKRICPNTGSKFYDLN 23 (129)
T ss_pred ccccCCCcCccccccC
Confidence 3344555555554443
No 180
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=22.44 E-value=57 Score=30.30 Aligned_cols=28 Identities=25% Similarity=0.693 Sum_probs=22.2
Q ss_pred EeccccceeeeeeeecCceeeCCCCCCceEE
Q 005584 173 VCTSCKVQYEYLRKYVNKRLSCKNCRGTFIA 203 (689)
Q Consensus 173 ~C~~C~~~yey~r~yln~~l~C~~C~g~F~A 203 (689)
.||.|...|.|.. ...+.||.|......
T Consensus 4 ~CP~C~seytY~d---g~~~iCpeC~~EW~~ 31 (109)
T TIGR00686 4 PCPKCNSEYTYHD---GTQLICPSCLYEWNE 31 (109)
T ss_pred cCCcCCCcceEec---CCeeECccccccccc
Confidence 5999999999954 456899999875544
No 181
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=22.34 E-value=1.7e+02 Score=26.13 Aligned_cols=41 Identities=7% Similarity=0.131 Sum_probs=28.7
Q ss_pred CCCCCEEEeecCCC--CCCcceeEEEEEeec--CCcEEEEEeccc
Q 005584 474 FKPKQIWAIYDEDD--GMPRLYCLIRQIISI--KPFKILITYLSS 514 (689)
Q Consensus 474 F~~gQiWA~Yd~~D--~mPr~Ya~I~kv~~~--~~f~l~i~wLe~ 514 (689)
|.+||.=.+-.+.+ .-|.+.|+|.++... ....|++.|+-.
T Consensus 4 y~vgd~V~v~~~~~~~~~~~~i~~I~~i~~~~~~~~~~~v~wf~r 48 (123)
T cd04370 4 YEVGDSVYVEPDDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYR 48 (123)
T ss_pred EecCCEEEEecCCcCCCCCCEEEEEeeeeECCCCCEEEEEEEEEc
Confidence 55677444444433 579999999999754 237999999954
No 182
>PRK11189 lipoprotein NlpI; Provisional
Probab=22.06 E-value=1.7e+02 Score=31.14 Aligned_cols=32 Identities=13% Similarity=-0.081 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCCChHH
Q 005584 12 KEIAEKRFVEKDFAGAKNYALKAKMLCPGLEG 43 (689)
Q Consensus 12 ~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~ 43 (689)
..++...+..++++.|...+.+|.++.|+...
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~ 133 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 133 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 33444555556666666666666666665443
No 183
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=21.72 E-value=1.5e+02 Score=29.84 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHH-HHHHHhhhhhccCCcCchhhccCCCCCCHHHHHHHHH
Q 005584 9 LRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVAT-FEVYFASEIKCNGEIDYYSVLGLKPSANKEAVKKQYR 87 (689)
Q Consensus 9 ~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~-~~v~~aa~~~~~~~~D~Y~ILgv~~~a~~~eIKkaYR 87 (689)
...+.+|...+..+|+..|...+.+-.+.+|..+.+...+-. ...+... +..+| ...-+...+++|+.
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~---------~~~~~--~~~~D~~~~~~A~~ 111 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ---------IPGIL--RSDRDQTSTRKAIE 111 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH---------HHHHH---TT---HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh---------Cccch--hcccChHHHHHHHH
Confidence 456788999999999999999999999999998766433222 1122211 11111 22345566666655
Q ss_pred HHH--HHhCCCCCCCCChHHHHHHHHHHHHHhcC
Q 005584 88 KMA--VLLHPDKNKCVGADGAFKLVSEAWTLLSD 119 (689)
Q Consensus 88 kLa--l~~HPDK~~~~~a~~~f~~I~eAy~vLsD 119 (689)
.+- +..+|+.. -+.++=+.|.+..+.|..
T Consensus 112 ~~~~li~~yP~S~---y~~~A~~~l~~l~~~la~ 142 (203)
T PF13525_consen 112 EFEELIKRYPNSE---YAEEAKKRLAELRNRLAE 142 (203)
T ss_dssp HHHHHHHH-TTST---THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCch---HHHHHHHHHHHHHHHHHH
Confidence 443 34588855 445555555555555543
No 184
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=21.65 E-value=1e+02 Score=29.62 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCh
Q 005584 6 EEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGL 41 (689)
Q Consensus 6 ~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l 41 (689)
|.|++.+.+|..+|..+|+..+-....||+.++-.|
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL 64 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITEL 64 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998887654
No 185
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=21.40 E-value=1.4e+02 Score=29.95 Aligned_cols=31 Identities=13% Similarity=-0.029 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCCChH
Q 005584 12 KEIAEKRFVEKDFAGAKNYALKAKMLCPGLE 42 (689)
Q Consensus 12 ~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~ 42 (689)
..+|+.++..+++..|...+.++.+.+|..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 3678888999999999999999999999754
No 186
>PF15469 Sec5: Exocyst complex component Sec5
Probab=21.36 E-value=3e+02 Score=27.12 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=46.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhhCCChH----HHHHHHHHHHHHHhhhhhccCCcCchhhccCCCCCCHHHHHHHHHHHH
Q 005584 15 AEKRFVEKDFAGAKNYALKAKMLCPGLE----GIAQMVATFEVYFASEIKCNGEIDYYSVLGLKPSANKEAVKKQYRKMA 90 (689)
Q Consensus 15 Ae~~l~~~D~~gA~~~a~kA~~l~P~l~----~i~q~l~~~~v~~aa~~~~~~~~D~Y~ILgv~~~a~~~eIKkaYRkLa 90 (689)
-++++..+||+.|.+++.||+.++-... -+..+...++.-+..- ....|+.|.-++ .+.++..+.-+.|.
T Consensus 93 L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~-----r~~l~~~L~~~~-~s~~~~~~~i~~Ll 166 (182)
T PF15469_consen 93 LRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEF-----REKLWEKLLSPP-SSQEEFLKLIRKLL 166 (182)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHhCCC-CCHHHHHHHHHHHH
Confidence 4568899999999999999999997653 2233333333222111 123444444333 66777777775554
Q ss_pred HHhCCCCC
Q 005584 91 VLLHPDKN 98 (689)
Q Consensus 91 l~~HPDK~ 98 (689)
.++|+-+
T Consensus 167 -~L~~~~d 173 (182)
T PF15469_consen 167 -ELNVEED 173 (182)
T ss_pred -hCCCCCC
Confidence 4566654
No 187
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=21.19 E-value=2e+02 Score=23.48 Aligned_cols=32 Identities=19% Similarity=0.009 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Q 005584 7 EALRAKEIAEKRFVEKDFAGAKNYALKAKMLC 38 (689)
Q Consensus 7 eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~ 38 (689)
-|.-+..+|......++++.|+.++++|..+.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 35 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIE 35 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999998773
No 188
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=21.06 E-value=3.1e+02 Score=26.40 Aligned_cols=35 Identities=17% Similarity=0.017 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 005584 6 EEALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPG 40 (689)
Q Consensus 6 ~eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~ 40 (689)
..|......+...+..++++.|..++.+|..+.|.
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 67 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEED 67 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 34556667777777778888888888777776654
No 189
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=21.02 E-value=1.5e+02 Score=31.74 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHH
Q 005584 11 AKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVA 49 (689)
Q Consensus 11 ~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~ 49 (689)
+...+...++.++|..|...++||+++.|......-.+.
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 333677788888888888888888888887654443333
No 190
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=20.88 E-value=77 Score=31.94 Aligned_cols=34 Identities=24% Similarity=0.626 Sum_probs=19.4
Q ss_pred CcceEEEEeccccceeeeeeeec-------CceeeCCCCCC
Q 005584 166 RIDTFWTVCTSCKVQYEYLRKYV-------NKRLSCKNCRG 199 (689)
Q Consensus 166 ~~~tFwt~C~~C~~~yey~r~yl-------n~~l~C~~C~g 199 (689)
.-..|+-.|+.|+..+.|...+. ...+.|++|+.
T Consensus 13 ~c~~l~~~C~~C~~~~~f~g~~~~~~~~~~~~~~~C~~C~~ 53 (188)
T PF08996_consen 13 DCEPLKLTCPSCGTEFEFPGVFEEDGDDVSPSGLQCPNCST 53 (188)
T ss_dssp T---EEEE-TTT--EEEE-SSS--SSEEEETTEEEETTT--
T ss_pred CCCceEeECCCCCCCccccccccCCccccccCcCcCCCCCC
Confidence 34568889999999999977654 23588999997
No 191
>PRK05978 hypothetical protein; Provisional
Probab=20.88 E-value=45 Score=32.66 Aligned_cols=38 Identities=18% Similarity=0.454 Sum_probs=29.0
Q ss_pred ceEEEEeccccceeeeeeeecCceeeCCCCCCceEEEec
Q 005584 168 DTFWTVCTSCKVQYEYLRKYVNKRLSCKNCRGTFIAVET 206 (689)
Q Consensus 168 ~tFwt~C~~C~~~yey~r~yln~~l~C~~C~g~F~A~e~ 206 (689)
.++.-.||+|+.---| +.|+.-...|+.|...|...+.
T Consensus 30 rGl~grCP~CG~G~LF-~g~Lkv~~~C~~CG~~~~~~~a 67 (148)
T PRK05978 30 RGFRGRCPACGEGKLF-RAFLKPVDHCAACGEDFTHHRA 67 (148)
T ss_pred HHHcCcCCCCCCCccc-ccccccCCCccccCCccccCCc
Confidence 3456679999765444 6899999999999988876543
No 192
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=20.54 E-value=2e+02 Score=27.22 Aligned_cols=35 Identities=14% Similarity=-0.116 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHH
Q 005584 11 AKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIA 45 (689)
Q Consensus 11 ~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~ 45 (689)
+...+...+..++++.|..+++++..+.|....+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~ 61 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAH 61 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 45678899999999999999999999999865544
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.37 E-value=8.5e+02 Score=25.82 Aligned_cols=34 Identities=12% Similarity=-0.221 Sum_probs=28.4
Q ss_pred HHHHHHHHHHH-HHhcCHHHHHHHHHHHHhhCCCh
Q 005584 8 ALRAKEIAEKR-FVEKDFAGAKNYALKAKMLCPGL 41 (689)
Q Consensus 8 A~r~~~iAe~~-l~~~D~~gA~~~a~kA~~l~P~l 41 (689)
+..+.+.|... +..++|+.|...+.+....+|.-
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s 176 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS 176 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 35667777776 56799999999999999999986
No 194
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=20.35 E-value=77 Score=22.58 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=14.5
Q ss_pred EeccccceeeeeeeecCceeeCCCCCCce
Q 005584 173 VCTSCKVQYEYLRKYVNKRLSCKNCRGTF 201 (689)
Q Consensus 173 ~C~~C~~~yey~r~yln~~l~C~~C~g~F 201 (689)
.|++|+..-..... .....|+.|...+
T Consensus 5 fC~~CG~~t~~~~~--g~~r~C~~Cg~~~ 31 (32)
T PF09297_consen 5 FCGRCGAPTKPAPG--GWARRCPSCGHEH 31 (32)
T ss_dssp B-TTT--BEEE-SS--SS-EEESSSS-EE
T ss_pred ccCcCCccccCCCC--cCEeECCCCcCEe
Confidence 37788877766443 5678888887643
No 195
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=20.15 E-value=2.2e+02 Score=33.56 Aligned_cols=34 Identities=32% Similarity=0.275 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCC
Q 005584 7 EALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPG 40 (689)
Q Consensus 7 eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~ 40 (689)
.|..+++.+...+..++|..|...+.+|..+.|.
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~ 159 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD 159 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3778899999999999999999999999999996
No 196
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=20.08 E-value=1.6e+02 Score=24.75 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 005584 7 EALRAKEIAEKRFVEKDFAGAKNYALKAKMLCPGLEGIAQMVAT 50 (689)
Q Consensus 7 eA~r~~~iAe~~l~~~D~~gA~~~a~kA~~l~P~l~~i~q~l~~ 50 (689)
+..-+..+|..++..+++..|..++.+ ..+.+....+.-+++.
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLAR 66 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHH
Confidence 455666689999999999999999988 6666655444444433
No 197
>PRK04351 hypothetical protein; Provisional
Probab=20.01 E-value=1.2e+02 Score=29.57 Aligned_cols=37 Identities=32% Similarity=0.690 Sum_probs=26.0
Q ss_pred ceEEEEeccccceeeeeeeecCceeeCCCCCCceEEE
Q 005584 168 DTFWTVCTSCKVQYEYLRKYVNKRLSCKNCRGTFIAV 204 (689)
Q Consensus 168 ~tFwt~C~~C~~~yey~r~yln~~l~C~~C~g~F~A~ 204 (689)
.+|-..|..|+..|.=.|..-...-+|..|++.+..+
T Consensus 109 ~~y~Y~C~~Cg~~~~r~Rr~n~~~yrCg~C~g~L~~~ 145 (149)
T PRK04351 109 KNYLYECQSCGQQYLRKRRINTKRYRCGKCRGKLKLI 145 (149)
T ss_pred ceEEEECCCCCCEeeeeeecCCCcEEeCCCCcEeeec
Confidence 4588889999876543333323558899999988765
Done!