Query 005584
Match_columns 689
No_of_seqs 353 out of 2485
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 18:01:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005584.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2093-2097//hhsearch_pdb/005584hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6l_A DNAJ homolog subfamily 1.0 1 1 174.1 6.8 130 63-204 8-146 (155)
2 3lz8_A Putative chaperone DNAJ 1.0 1 1 137.2 0.0 69 64-132 27-95 (329)
3 3apo_A DNAJ homolog subfamily 1.0 1 1 130.9 0.4 75 62-136 18-93 (780)
4 2ctq_A DNAJ homolog subfamily 1.0 1 1 128.0 5.9 73 63-135 18-91 (112)
5 2ctr_A DNAJ homolog subfamily 1.0 1 1 127.5 6.4 73 63-135 5-77 (88)
6 3apq_A DNAJ homolog subfamily 1.0 1 1 127.1 6.1 72 65-136 2-74 (210)
7 2cug_A Mkiaa0962 protein; DNAJ 1.0 1 1 126.3 6.9 71 63-133 15-85 (88)
8 1hdj_A Human HSP40, HDJ-1; mol 1.0 1 1 126.0 7.1 72 64-135 2-73 (77)
9 1wjz_A 1700030A21RIK protein; 1.0 1 1 125.4 4.7 70 63-132 14-90 (94)
10 2ctp_A DNAJ homolog subfamily 1.0 1 1 125.3 5.2 71 63-133 5-75 (78)
No 1
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=174.10 Aligned_cols=130 Identities=25% Similarity=0.479 Sum_probs=100.8
Q ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC-------HHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCC
Q ss_conf 8768300126788999999999999999980999999988-------579999999999994178401120100043569
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVG-------ADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVA 135 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYrkLal~~HPDKn~~~~-------a~~af~~I~eAy~vLsD~~kR~~YD~~~~~~~~ 135 (689)
...|||+||||+++++..+||++||+|++++||||+.... |.+.|+.|++||++|+||.+|..||..+.....
T Consensus 8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~~ 87 (155)
T 2l6l_A 8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDL 87 (155)
T ss_dssp CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHHH
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHC
T ss_conf 99982575389999799999999999999878198988875567899999999999999984798999999997353120
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECC--CEEECCCCCCCEEEE
Q ss_conf 997556787776788888899999999988765179990466630666431047--501077888831887
Q 005584 136 PGVVQTNLSSVYASGVAGFGNCPNSPIPHTRIDTFWTVCTSCKVQYEYLRKYVN--KRLSCKNCRGTFIAV 204 (689)
Q Consensus 136 ~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~~~tFwT~C~~C~~~yey~r~yln--~~l~C~~C~~~F~A~ 204 (689)
....+ ..+. . .+..+.. .....+||+.|+ |++.|+|++..++ ..+.|++|+..|.++
T Consensus 88 ~~~~~--~~~~--~---~~~~m~~----~e~~~~f~~~Cr-CG~~f~i~~~~l~~~~~v~C~sCSl~~~v~ 146 (155)
T 2l6l_A 88 RNVGP--VDAQ--V---YLEEMSW----NEGDHSFYLSCR-CGGKYSVSKDEAEEVSLISCDTCSLIIELL 146 (155)
T ss_dssp HTTCS--SSEE--E---ETTTSEE----ETTTTEEEEECS-SSCEEEEETTHHHHCCEEECSSSSCEEEEE
T ss_pred CCCCC--CCCE--E---EHHHHCC----CCCCCEEEECCC-CCCEEEECHHHHCCCCEEECCCCCEEEEEE
T ss_conf 23443--1101--0---1877351----567767977289-998688629996899799899985078999
No 2
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=1.00 E-value=1 Score=137.17 Aligned_cols=69 Identities=36% Similarity=0.692 Sum_probs=65.3
Q ss_pred CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCC
Q ss_conf 768300126788999999999999999980999999988579999999999994178401120100043
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSK 132 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYrkLal~~HPDKn~~~~a~~af~~I~eAy~vLsD~~kR~~YD~~~~~ 132 (689)
..|||+||||+++|+.++||++||+|++++|||+++.+.|+++|++|++||++|+||.+|..||+++..
T Consensus 27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 95 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH 95 (329)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 469799839699999999999999999987889899847999999999999985413100233511124
No 3
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=1.00 E-value=1 Score=130.93 Aligned_cols=75 Identities=31% Similarity=0.586 Sum_probs=68.4
Q ss_pred CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCC
Q ss_conf 68768300126788999999999999999980999999-9885799999999999941784011201000435699
Q 005584 62 NGEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNK-CVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVAP 136 (689)
Q Consensus 62 ~~~~D~Y~ILgv~~~a~~~eIKkaYrkLal~~HPDKn~-~~~a~~af~~I~eAy~vLsD~~kR~~YD~~~~~~~~~ 136 (689)
....|||+||||+++|+..+||++||+|++++||||++ .+.++++|+.|++||++|+||.+|..||+.+..+...
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~ 93 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 93 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-------
T ss_pred CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
T ss_conf 9999989980989999999999999999998786989997579999999999999971768889887641123346
No 4
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=128.02 Aligned_cols=73 Identities=27% Similarity=0.439 Sum_probs=67.7
Q ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCC
Q ss_conf 8768300126788999999999999999980999999-988579999999999994178401120100043569
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNK-CVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVA 135 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYrkLal~~HPDKn~-~~~a~~af~~I~eAy~vLsD~~kR~~YD~~~~~~~~ 135 (689)
...|||+||||+++++..+||++||+|++++||||++ .+.+++.|+.|++||++|+||.+|..||..+..+..
T Consensus 18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 79999998499999899999999999999888398999679999999999999998898899999986311358
No 5
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=127.47 Aligned_cols=73 Identities=36% Similarity=0.627 Sum_probs=68.1
Q ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCC
Q ss_conf 8768300126788999999999999999980999999988579999999999994178401120100043569
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVA 135 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYrkLal~~HPDKn~~~~a~~af~~I~eAy~vLsD~~kR~~YD~~~~~~~~ 135 (689)
...|||+||||+++++..+||++||+|++++|||++..+.+.+.|+.|++||++|+||.+|..||..+.....
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 77 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFT 77 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHT
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
T ss_conf 8879999859699989999999999999988829898858999999999999997899999999985730112
No 6
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=1.00 E-value=1 Score=127.06 Aligned_cols=72 Identities=32% Similarity=0.603 Sum_probs=66.4
Q ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCC
Q ss_conf 68300126788999999999999999980999999-9885799999999999941784011201000435699
Q 005584 65 IDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNK-CVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVAP 136 (689)
Q Consensus 65 ~D~Y~ILgv~~~a~~~eIKkaYrkLal~~HPDKn~-~~~a~~af~~I~eAy~vLsD~~kR~~YD~~~~~~~~~ 136 (689)
.|||+||||+++|+..+||++||+|++++||||++ .+.+.++|+.|++||++|+||.+|..||..+..+...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~ 74 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 74 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCT
T ss_pred CCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC
T ss_conf 7879986999998999999999999998795989997589999999999999967999999998752325565
No 7
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=126.27 Aligned_cols=71 Identities=41% Similarity=0.622 Sum_probs=67.0
Q ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
Q ss_conf 87683001267889999999999999999809999999885799999999999941784011201000435
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQ 133 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYrkLal~~HPDKn~~~~a~~af~~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (689)
...|||+||||+++++..+||++||+|++++|||++..+.+++.|+.|++||++|+||.+|..||..+...
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
T ss_conf 89799999196999999999999999999988698987559999999999999987999999998727778
No 8
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=1.00 E-value=1 Score=126.03 Aligned_cols=72 Identities=42% Similarity=0.668 Sum_probs=67.6
Q ss_pred CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCC
Q ss_conf 768300126788999999999999999980999999988579999999999994178401120100043569
Q 005584 64 EIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQVA 135 (689)
Q Consensus 64 ~~D~Y~ILgv~~~a~~~eIKkaYrkLal~~HPDKn~~~~a~~af~~I~eAy~vLsD~~kR~~YD~~~~~~~~ 135 (689)
..|||+||||+++++..+||++||+|++++|||++..+++.+.|+.|++||++|+||.+|..||..+..+..
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCC
T ss_conf 988898859999989999999999999998809998804999999999999998899999999987630115
No 9
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=1.00 E-value=1 Score=125.44 Aligned_cols=70 Identities=37% Similarity=0.692 Sum_probs=64.6
Q ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-------CCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCC
Q ss_conf 87683001267889999999999999999809999999-------88579999999999994178401120100043
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKC-------VGADGAFKLVSEAWTLLSDSGKRSSYDLKRSK 132 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYrkLal~~HPDKn~~-------~~a~~af~~I~eAy~vLsD~~kR~~YD~~~~~ 132 (689)
...|||+||||+++++..+||++||+|++++|||+++. ..+.+.|+.|++||++|+||.+|..||..+..
T Consensus 14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 99985787099999799999999999999888098977787143699999999999999998899999999987517
No 10
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=125.34 Aligned_cols=71 Identities=42% Similarity=0.700 Sum_probs=66.8
Q ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCC
Q ss_conf 87683001267889999999999999999809999999885799999999999941784011201000435
Q 005584 63 GEIDYYSVLGLKPSANKEAVKKQYRKMAVLLHPDKNKCVGADGAFKLVSEAWTLLSDSGKRSSYDLKRSKQ 133 (689)
Q Consensus 63 ~~~D~Y~ILgv~~~a~~~eIKkaYrkLal~~HPDKn~~~~a~~af~~I~eAy~vLsD~~kR~~YD~~~~~~ 133 (689)
...|||.||||+++++..+||++||+|++++|||++..+++.+.|+.|++||++|+||.+|..||..+...
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
T ss_conf 99899998498999899999999999999988198998339999999999999988999999998737656
Done!