Query 005586
Match_columns 689
No_of_seqs 468 out of 4750
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 18:16:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005586.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2093-2097//hhsearch_pdb/005586hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 404.3 20.4 266 409-687 41-325 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 402.6 17.4 266 409-687 13-295 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 399.9 18.6 258 410-679 27-304 (308)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 394.7 20.7 259 409-681 36-300 (307)
5 4b9d_A Serine/threonine-protei 1.0 1 1 393.5 16.9 259 409-682 24-284 (350)
6 4ase_A Vascular endothelial gr 1.0 1 1 393.3 16.3 271 399-679 54-345 (353)
7 4fih_A Serine/threonine-protei 1.0 1 1 391.4 16.8 255 409-681 74-330 (346)
8 4fie_A Serine/threonine-protei 1.0 1 1 391.3 17.9 256 408-680 150-406 (423)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 383.4 16.0 258 409-687 58-326 (336)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 379.2 13.9 253 409-678 32-294 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=404.26 Aligned_cols=266 Identities=23% Similarity=0.389 Sum_probs=220.1
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCE
Q ss_conf 05884542154885209999955------993999999024687627999999999985148995114866897189981
Q 005586 409 QCFSEVNLLGKGNFSSVYKGTLR------DGTLVAIRSINVTSCKSEEAEFVKGLYLLTSLRHENIIRLRGFCCSRGRGE 482 (689)
Q Consensus 409 ~~f~~~~~lg~G~~g~Vy~~~~~------~g~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 482 (689)
++|...+.||+|+||.||+|+++ +++.||||+++... ....++|.+|++++++++|||||+++|+|. +...
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~-~~~~~~f~~E~~il~~l~HpnIV~l~g~~~--~~~~ 117 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS-ESARQDFQREAELLTMLQHQHIVRFFGVCT--EGRP 117 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCS-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEC--SSSS
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCC-HHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--ECCE
T ss_conf 9928877971477848998998786657789699999977579-799999999999998589989996989999--8998
Q ss_pred EEEEEECCCCCCHHHHHHHCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEC
Q ss_conf 8999972899998888600179-----------99878999999999999999755307999999636258799866545
Q 005586 483 CFLIYDFAPKGKLSKYLDQEEG-----------SSNVLDWSTRVSIIIGIAKGIGYLHSSEVNKPAIVHRNLSVEKVLID 551 (689)
Q Consensus 483 ~~lv~e~~~~gsL~~~l~~~~~-----------~~~~l~~~~~~~ia~~ia~gL~~LH~~~~~~~~ivH~dlk~~Nill~ 551 (689)
.++||||+++|+|.++++.... ...+++|.+++.|+.|++.||+|||+.+ |+||||||+|||++
T Consensus 118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~-----iiHRDLKp~NILl~ 192 (329)
T 4aoj_A 118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLH-----FVHRDLATRNCLVG 192 (329)
T ss_dssp EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTT-----CCCSCCCGGGEEEE
T ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC-----EECCCCCHHHEEEC
T ss_conf 9999982799939999986075410012211245788999999999999999999984088-----42266667648988
Q ss_pred CCCCEEEECCCCCCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q ss_conf 999807803565334568711-34514788878888102235888986640208899999991-9988521477887422
Q 005586 552 QQFNPLIADCGLHKLLADDIV-FSVLKTSAAMGYLAPEYVTTGRFTERSDIFAFGVIILQILT-GSLVLTSSMRLAAESA 629 (689)
Q Consensus 552 ~~~~~kl~Dfgla~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvil~ellt-G~~p~~~~~~~~~~~~ 629 (689)
+++.+||+|||+++.+..... .......||+.|||||++.+..++.++|||||||++|||+| |+.||.........
T Consensus 193 ~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~-- 270 (329)
T 4aoj_A 193 QGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAI-- 270 (329)
T ss_dssp TTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHH--
T ss_pred CCCCEEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH--
T ss_conf 999689766603336567875300476455656658265447999966300105789999982899999998999999--
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 2567640014899998999999999998111799999999999999986087542344
Q 005586 630 TFENFIDRNLKGKFSESEAAKLGKMALVCTHEDPENRPTMEAVIEELTVAAPVMATFL 687 (689)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~~~ 687 (689)
..+........+..+++++.+++.+||+.||++||+|.||+++|+.+....+.++
T Consensus 271 ---~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~pp~~l 325 (329)
T 4aoj_A 271 ---DCITQGRELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPPVYL 325 (329)
T ss_dssp ---HHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSCC---
T ss_pred ---HHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf ---9998089899864463999999999747596579299999999998745885103
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=402.64 Aligned_cols=266 Identities=23% Similarity=0.400 Sum_probs=218.6
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCE
Q ss_conf 05884542154885209999955------993999999024687627999999999985148995114866897189981
Q 005586 409 QCFSEVNLLGKGNFSSVYKGTLR------DGTLVAIRSINVTSCKSEEAEFVKGLYLLTSLRHENIIRLRGFCCSRGRGE 482 (689)
Q Consensus 409 ~~f~~~~~lg~G~~g~Vy~~~~~------~g~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~ 482 (689)
++|...+.||+|+||.||+|++. ++..||||+++... ....++|.+|++++++++|||||+++|+|. +.+.
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~-~~~~~~f~~E~~il~~l~HpnIV~l~g~~~--~~~~ 89 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS-DNARKDFHREAELLTNLQHEHIVKFYGVCV--EGDP 89 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEC--SSSS
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCC-HHHHHHHHHHHHHHHHCCCCCCCCEEEEEE--ECCE
T ss_conf 8929824982078829999998776667788799999967778-589999999999998589988862879995--6998
Q ss_pred EEEEEECCCCCCHHHHHHHCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCC
Q ss_conf 899997289999888860017---------99987899999999999999975530799999963625879986654599
Q 005586 483 CFLIYDFAPKGKLSKYLDQEE---------GSSNVLDWSTRVSIIIGIAKGIGYLHSSEVNKPAIVHRNLSVEKVLIDQQ 553 (689)
Q Consensus 483 ~~lv~e~~~~gsL~~~l~~~~---------~~~~~l~~~~~~~ia~~ia~gL~~LH~~~~~~~~ivH~dlk~~Nill~~~ 553 (689)
.++||||+++|+|.++++... .....++|.+++.|+.|++.||+|||+.+ |+||||||+|||++++
T Consensus 90 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~-----iiHRDlKp~NILl~~~ 164 (299)
T 4asz_A 90 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQH-----FVHRDLATRNCLVGEN 164 (299)
T ss_dssp EEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTT-----CCCSCCSGGGEEECGG
T ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCHHHEEECCC
T ss_conf 99999858999689999860864211123577788999999999999999999997599-----0467657763898799
Q ss_pred CCEEEECCCCCCCCCCCCEEEE-ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q ss_conf 9807803565334568711345-14788878888102235888986640208899999991-998852147788742225
Q 005586 554 FNPLIADCGLHKLLADDIVFSV-LKTSAAMGYLAPEYVTTGRFTERSDIFAFGVIILQILT-GSLVLTSSMRLAAESATF 631 (689)
Q Consensus 554 ~~~kl~Dfgla~~~~~~~~~~~-~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvil~ellt-G~~p~~~~~~~~~~~~~~ 631 (689)
+.+||+|||+|+.......... ....||+.|||||++.++.|+.++|||||||++|||+| |+.||........
T Consensus 165 ~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~----- 239 (299)
T 4asz_A 165 LLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEV----- 239 (299)
T ss_dssp GCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHH-----
T ss_pred CCEEECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH-----
T ss_conf 868988730010067887416647513470103889870799970366778899999998089999999899999-----
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 67640014899998999999999998111799999999999999986087542344
Q 005586 632 ENFIDRNLKGKFSESEAAKLGKMALVCTHEDPENRPTMEAVIEELTVAAPVMATFL 687 (689)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~~~~~~ 687 (689)
...+........+..++.++.+++.+||+.||++||+|.++++.|+..+...+.++
T Consensus 240 ~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p~~l 295 (299)
T 4asz_A 240 IECITQGRVLQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASPVYL 295 (299)
T ss_dssp HHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99998089889974143999999999768796689299999999987776397122
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=399.94 Aligned_cols=258 Identities=23% Similarity=0.386 Sum_probs=214.2
Q ss_pred CCCCCCCCCCCCCCEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEE
Q ss_conf 5884542154885209999955------9939999990246876279999999999851489951148668971899818
Q 005586 410 CFSEVNLLGKGNFSSVYKGTLR------DGTLVAIRSINVTSCKSEEAEFVKGLYLLTSLRHENIIRLRGFCCSRGRGEC 483 (689)
Q Consensus 410 ~f~~~~~lg~G~~g~Vy~~~~~------~g~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~~ 483 (689)
++...+.||+|+||.||+|++. +++.||||+++........++|.+|+.++++++|||||+++|+|. +....
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~--~~~~~ 104 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVT--KDQPL 104 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEEC--SSSSC
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE--ECCEE
T ss_conf 8858669135888489999985776588886999999880149689999999999998589989877364998--89988
Q ss_pred EEEEECCCCCCHHHHHHHCCCC------------CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEEC
Q ss_conf 9999728999988886001799------------9878999999999999999755307999999636258799866545
Q 005586 484 FLIYDFAPKGKLSKYLDQEEGS------------SNVLDWSTRVSIIIGIAKGIGYLHSSEVNKPAIVHRNLSVEKVLID 551 (689)
Q Consensus 484 ~lv~e~~~~gsL~~~l~~~~~~------------~~~l~~~~~~~ia~~ia~gL~~LH~~~~~~~~ivH~dlk~~Nill~ 551 (689)
++||||+++|+|.++|...... ...++|..+..|+.|+|.||+|||+.+ |+||||||+|||++
T Consensus 105 ~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~-----iiHRDLK~~NILl~ 179 (308)
T 4gt4_A 105 SMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHH-----VVHKDLATRNVLVY 179 (308)
T ss_dssp EEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTT-----CCCSCCSGGGEEEC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCCCCEEEC
T ss_conf 9999818999499999862765433332211112468999999999999999999998689-----97787362306887
Q ss_pred CCCCEEEECCCCCCCCCCCCEE-EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q ss_conf 9998078035653345687113-4514788878888102235888986640208899999991-9988521477887422
Q 005586 552 QQFNPLIADCGLHKLLADDIVF-SVLKTSAAMGYLAPEYVTTGRFTERSDIFAFGVIILQILT-GSLVLTSSMRLAAESA 629 (689)
Q Consensus 552 ~~~~~kl~Dfgla~~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvil~ellt-G~~p~~~~~~~~~~~~ 629 (689)
+++.+||+|||+++.+...... ......||++|+|||++.++.++.++|||||||++|||+| |+.||.+......
T Consensus 180 ~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~--- 256 (308)
T 4gt4_A 180 DKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDV--- 256 (308)
T ss_dssp GGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHH---
T ss_pred CCCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHH---
T ss_conf 99978988760202336777404734512577656989982799996300015799999999689999999899999---
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 25676400148999989999999999981117999999999999999860
Q 005586 630 TFENFIDRNLKGKFSESEAAKLGKMALVCTHEDPENRPTMEAVIEELTVA 679 (689)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~ 679 (689)
...+........+..++..+.+++..||+.||++||+|.||+++|+..
T Consensus 257 --~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 257 --VEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp --HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred --HHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf --999981998999620369999999997587965792999999999853
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=394.74 Aligned_cols=259 Identities=19% Similarity=0.367 Sum_probs=208.4
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEE
Q ss_conf 05884542154885209999955993999999024687-62799999999998514899511486689718998189999
Q 005586 409 QCFSEVNLLGKGNFSSVYKGTLRDGTLVAIRSINVTSC-KSEEAEFVKGLYLLTSLRHENIIRLRGFCCSRGRGECFLIY 487 (689)
Q Consensus 409 ~~f~~~~~lg~G~~g~Vy~~~~~~g~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~~~lv~ 487 (689)
+++...+.||+|+||.||+|++++ .||||+++.... ....+.|.+|+.++++++|||||+++|++.+ +..++||
T Consensus 36 ~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~---~~~~iVm 110 (307)
T 3omv_A 36 SEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK---DNLAIVT 110 (307)
T ss_dssp TSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS---SSCEEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC---CEEEEEE
T ss_conf 994984498208886899999899--68999997268999999999999999985899887469999978---9589999
Q ss_pred ECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCC
Q ss_conf 72899998888600179998789999999999999997553079999996362587998665459998078035653345
Q 005586 488 DFAPKGKLSKYLDQEEGSSNVLDWSTRVSIIIGIAKGIGYLHSSEVNKPAIVHRNLSVEKVLIDQQFNPLIADCGLHKLL 567 (689)
Q Consensus 488 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~ia~~ia~gL~~LH~~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgla~~~ 567 (689)
||+++|+|.++++.... .++|.++..|+.|+|.||+|||+.+ |+||||||+|||+++++.+||+|||+|+..
T Consensus 111 Ey~~gGsL~~~l~~~~~---~l~~~~~~~i~~qia~gL~yLH~~~-----IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 182 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQET---KFQMFQLIDIARQTAQGMDYLHAKN-----IIHRDMKSNNIFLHEGLTVKIGDFGLATVK 182 (307)
T ss_dssp ECCSSCBHHHHHHTSCC---CCCHHHHHHHHHHHHHHHHHHHHTT-----CBCSCCCSSSEEEETTEEEEECCCSSCBC-
T ss_pred ECCCCCCHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCHHHEEECCCCCEEEEECCCCEEC
T ss_conf 74899878898752489---9999999999999999999997799-----527855789978889990899441575424
Q ss_pred CCCC-EEEEECCCCCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHCCCCCCC
Q ss_conf 6871-134514788878888102235---88898664020889999999199885214778874222567-640014899
Q 005586 568 ADDI-VFSVLKTSAAMGYLAPEYVTT---GRFTERSDIFAFGVIILQILTGSLVLTSSMRLAAESATFEN-FIDRNLKGK 642 (689)
Q Consensus 568 ~~~~-~~~~~~~~~t~~y~aPE~~~~---~~~~~~sDv~S~Gvil~elltG~~p~~~~~~~~~~~~~~~~-~~~~~~~~~ 642 (689)
.... ........||+.|||||++.+ +.|+.++|||||||++|||+||+.||............... ...+. ...
T Consensus 183 ~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~-~~~ 261 (307)
T 3omv_A 183 SRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPD-LSK 261 (307)
T ss_dssp -----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCC-STT
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC-CCC
T ss_conf 6677640315644687724987861468998786877572899999999788998999969999999965888887-200
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 998999999999998111799999999999999986087
Q 005586 643 FSESEAAKLGKMALVCTHEDPENRPTMEAVIEELTVAAP 681 (689)
Q Consensus 643 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~ 681 (689)
.+..++..+.+++.+||+.||++||+|.+|+++|+....
T Consensus 262 ~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 262 LYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp SCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHC
T ss_conf 354456999999999757797689098999999999745
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=393.49 Aligned_cols=259 Identities=18% Similarity=0.358 Sum_probs=216.1
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEC-CCCEEEEEEECCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 05884542154885209999955-993999999024687-6279999999999851489951148668971899818999
Q 005586 409 QCFSEVNLLGKGNFSSVYKGTLR-DGTLVAIRSINVTSC-KSEEAEFVKGLYLLTSLRHENIIRLRGFCCSRGRGECFLI 486 (689)
Q Consensus 409 ~~f~~~~~lg~G~~g~Vy~~~~~-~g~~vaiK~~~~~~~-~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~~~lv 486 (689)
++|+..+.||+|+||.||+|+.+ +|+.||+|++..... ......+.+|+.++++++|||||++++++.+ .+..|+|
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~--~~~~yiV 101 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEE--NGSLYIV 101 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE--TTEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--CCEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998--9999999
Q ss_pred EECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf 97289999888860017999878999999999999999755307999999636258799866545999807803565334
Q 005586 487 YDFAPKGKLSKYLDQEEGSSNVLDWSTRVSIIIGIAKGIGYLHSSEVNKPAIVHRNLSVEKVLIDQQFNPLIADCGLHKL 566 (689)
Q Consensus 487 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~ia~~ia~gL~~LH~~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgla~~ 566 (689)
|||+++|+|.+++..... ..+++..+..|+.|++.||+|||+.+ |+||||||+|||+++++.+||+|||+|+.
T Consensus 102 mEy~~gg~L~~~i~~~~~--~~~~e~~~~~~~~qi~~aL~ylH~~~-----IiHRDlKp~NILl~~~g~vKl~DFGla~~ 174 (350)
T 4b9d_A 102 MDYCEGGDLFKRINAQKG--VLFQEDQILDWFVQICLALKHVHDRK-----ILHRDIKSQNIFLTKDGTVQLGDFGIARV 174 (350)
T ss_dssp EECCTTCBHHHHHHHTTT--CCCCHHHHHHHHHHHHHHHHHHHHTT-----CEETTCCGGGEEECTTCCEEECSTTEESC
T ss_pred EECCCCCCHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHCC-----EEECCCCHHHEEECCCCCEEECCCCCCEE
T ss_conf 948899839999997389--99978999999999999999999899-----15135978997987899989764652144
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 56871134514788878888102235888986640208899999991998852147788742225676400148999989
Q 005586 567 LADDIVFSVLKTSAAMGYLAPEYVTTGRFTERSDIFAFGVIILQILTGSLVLTSSMRLAAESATFENFIDRNLKGKFSES 646 (689)
Q Consensus 567 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (689)
+..... ......||+.|+|||++.+..|+.++||||+||++|||+||+.||......... ..+..... ...+..
T Consensus 175 ~~~~~~-~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~----~~i~~~~~-~~~~~~ 248 (350)
T 4b9d_A 175 LNSTVE-LARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLV----LKIISGSF-PPVSLH 248 (350)
T ss_dssp CCHHHH-HHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH----HHHHHTCC-CCCCTT
T ss_pred ECCCCC-CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH----HHHHCCCC-CCCCCC
T ss_conf 068854-101457883603999987999895999999999999999787998996999999----99980899-999755
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999999999981117999999999999999860875
Q 005586 647 EAAKLGKMALVCTHEDPENRPTMEAVIEELTVAAPV 682 (689)
Q Consensus 647 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~~ 682 (689)
.+.++.+++.+||+.||++||++.|+++|.|.....
T Consensus 249 ~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~~ 284 (350)
T 4b9d_A 249 YSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKRI 284 (350)
T ss_dssp SCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHTTG
T ss_pred CCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHHCCC
T ss_conf 799999999998558966790899996399761678
No 6
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=393.31 Aligned_cols=271 Identities=23% Similarity=0.383 Sum_probs=222.3
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECC------CCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-CCCEEE
Q ss_conf 2778999983058845421548852099999559------939999990246876279999999999851489-951148
Q 005586 399 LNLEEVESATQCFSEVNLLGKGNFSSVYKGTLRD------GTLVAIRSINVTSCKSEEAEFVKGLYLLTSLRH-ENIIRL 471 (689)
Q Consensus 399 ~~~~~~~~~~~~f~~~~~lg~G~~g~Vy~~~~~~------g~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h-~niv~l 471 (689)
+..++++...++|+..+.||+|+||.||+|.+.. ++.||+|++...........|.+|+.++.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEECCCCCEEEEEEECCCCCCHHHHHHHCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 668971899818999972899998888600179------------99878999999999999999755307999999636
Q 005586 472 RGFCCSRGRGECFLIYDFAPKGKLSKYLDQEEG------------SSNVLDWSTRVSIIIGIAKGIGYLHSSEVNKPAIV 539 (689)
Q Consensus 472 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~------------~~~~l~~~~~~~ia~~ia~gL~~LH~~~~~~~~iv 539 (689)
+|+|.+. ....++|||||++|+|.++|+.... ....+++..+..|+.|+|.||+|||+.+ |+
T Consensus 134 ~g~~~~~-~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~-----ii 207 (353)
T 4ase_A 134 LGACTKP-GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRK-----CI 207 (353)
T ss_dssp EEEECCT-TSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTT-----CC
T ss_pred EEEEEEC-CCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----EE
T ss_conf 8999946-97799999838989799999743566654333410110356899999999999999987676278-----43
Q ss_pred ECCCCCCCEEECCCCCEEEECCCCCCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCC
Q ss_conf 258799866545999807803565334568711-34514788878888102235888986640208899999991-9988
Q 005586 540 HRNLSVEKVLIDQQFNPLIADCGLHKLLADDIV-FSVLKTSAAMGYLAPEYVTTGRFTERSDIFAFGVIILQILT-GSLV 617 (689)
Q Consensus 540 H~dlk~~Nill~~~~~~kl~Dfgla~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvil~ellt-G~~p 617 (689)
||||||+|||+++++.+||+|||+|+.+..+.. .......||+.|||||++.+..|+.++|||||||++|||+| |+.|
T Consensus 208 HRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~P 287 (353)
T 4ase_A 208 HRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP 287 (353)
T ss_dssp CSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred CCCCCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCC
T ss_conf 57467211305799978979654322245688720325401466656989994699997553740689999998189999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 52147788742225676400148999989999999999981117999999999999999860
Q 005586 618 LTSSMRLAAESATFENFIDRNLKGKFSESEAAKLGKMALVCTHEDPENRPTMEAVIEELTVA 679 (689)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~ 679 (689)
|.+.... ..+...+....+...+..++.++.+++..||+.||++||||.+++++|...
T Consensus 288 f~~~~~~----~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~l 345 (353)
T 4ase_A 288 YPGVKID----EEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL 345 (353)
T ss_dssp STTCCCS----HHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred CCCCCHH----HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 9998989----999999973898888865789999999997686966793999999999999
No 7
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=391.43 Aligned_cols=255 Identities=16% Similarity=0.311 Sum_probs=213.2
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEE
Q ss_conf 05884542154885209999955-99399999902468762799999999998514899511486689718998189999
Q 005586 409 QCFSEVNLLGKGNFSSVYKGTLR-DGTLVAIRSINVTSCKSEEAEFVKGLYLLTSLRHENIIRLRGFCCSRGRGECFLIY 487 (689)
Q Consensus 409 ~~f~~~~~lg~G~~g~Vy~~~~~-~g~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~~~lv~ 487 (689)
+.|+..+.||+|+||.||+|+.+ +|+.||+|++...... ....+.+|+.++++++|||||++++++.+ .+..|+||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~-~~~~~~~Ei~il~~l~HpnIV~l~~~~~~--~~~~~ivm 150 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ-RRELLFNEVVIMRDYQHENVVEMYNSYLV--GDELWVVM 150 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS-SGGGGHHHHHHHHHCCCTTBCCEEEEEEE--TTEEEEEE
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHH-HHHHHHHHHHHHHHCCCCCCCCEEEEEEE--CCEEEEEE
T ss_conf 7538707960272829999999899989999998527656-89999999999986799899919999998--99999999
Q ss_pred ECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCCC
Q ss_conf 72899998888600179998789999999999999997553079999996362587998665459998078035653345
Q 005586 488 DFAPKGKLSKYLDQEEGSSNVLDWSTRVSIIIGIAKGIGYLHSSEVNKPAIVHRNLSVEKVLIDQQFNPLIADCGLHKLL 567 (689)
Q Consensus 488 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~ia~~ia~gL~~LH~~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgla~~~ 567 (689)
||+++|+|.+++... .+++..+..|+.|++.||+|||+.+ |+||||||+|||+++++.+||+|||+|+.+
T Consensus 151 Ey~~gg~L~~~l~~~-----~l~e~~~~~~~~qi~~aL~ylH~~~-----IiHRDlKp~NILl~~~g~vKl~DFGla~~~ 220 (346)
T 4fih_A 151 EFLEGGALTDIVTHT-----RMNEEQIAAVCLAVLQALSVLHAQG-----VIHRDIKSDSILLTHDGRVKLSDFGFCAQV 220 (346)
T ss_dssp CCCTTEEHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHHHHTT-----EECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred ECCCCCCHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCHHHEEECCCCCEEEECCCCCEEC
T ss_conf 698998089998718-----9899999999999999999999888-----355627889978879998899027575366
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC-CCCCCCHH
Q ss_conf 68711345147888788881022358889866402088999999919988521477887422256764001-48999989
Q 005586 568 ADDIVFSVLKTSAAMGYLAPEYVTTGRFTERSDIFAFGVIILQILTGSLVLTSSMRLAAESATFENFIDRN-LKGKFSES 646 (689)
Q Consensus 568 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 646 (689)
..... ......||+.|+|||++.+..|+.++||||+||++|||++|+.||.+....... ..+.... ........
T Consensus 221 ~~~~~-~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~----~~i~~~~~~~~~~~~~ 295 (346)
T 4fih_A 221 SKEVP-RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAM----KMIRDNLPPRLKNLHK 295 (346)
T ss_dssp CSSSC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHH----HHHHHSSCCCCSCGGG
T ss_pred CCCCC-CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH----HHHHCCCCCCCCCCCC
T ss_conf 78877-534656275827999977999996899999999999999787998985999999----9997179998875022
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999999998111799999999999999986087
Q 005586 647 EAAKLGKMALVCTHEDPENRPTMEAVIEELTVAAP 681 (689)
Q Consensus 647 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~~ 681 (689)
.+.++.+++.+||+.||++||++.|+++|.|....
T Consensus 296 ~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~ 330 (346)
T 4fih_A 296 VSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKA 330 (346)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGC
T ss_pred CCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCC
T ss_conf 99999999999867995689099999609865689
No 8
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=391.26 Aligned_cols=256 Identities=15% Similarity=0.309 Sum_probs=213.2
Q ss_pred HCCCCCCCCCCCCCCCEEEEEEEC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 305884542154885209999955-9939999990246876279999999999851489951148668971899818999
Q 005586 408 TQCFSEVNLLGKGNFSSVYKGTLR-DGTLVAIRSINVTSCKSEEAEFVKGLYLLTSLRHENIIRLRGFCCSRGRGECFLI 486 (689)
Q Consensus 408 ~~~f~~~~~lg~G~~g~Vy~~~~~-~g~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~~~lv 486 (689)
.+.|+..+.||+|+||.||+|+.+ +|+.||+|++..... .....+.+|+.+|++++|||||++++++.. .+..|+|
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~-~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~--~~~~~iV 226 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ-QRRELLFNEVVIMRDYQHENVVEMYNSYLV--GDELWVV 226 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTC-SSGGGHHHHHHHHHHCCCTTBCCEEEEEEE--TTEEEEE
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--CCEEEEE
T ss_conf 6843861696248184899999999998999999862554-689999999999985799898716899998--9999999
Q ss_pred EECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCCCEEEECCCCCCC
Q ss_conf 97289999888860017999878999999999999999755307999999636258799866545999807803565334
Q 005586 487 YDFAPKGKLSKYLDQEEGSSNVLDWSTRVSIIIGIAKGIGYLHSSEVNKPAIVHRNLSVEKVLIDQQFNPLIADCGLHKL 566 (689)
Q Consensus 487 ~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~ia~~ia~gL~~LH~~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgla~~ 566 (689)
||||++|+|.+++.... +++..+..|+.|++.||+|||+.+ |+||||||+|||++.++.+||+|||+|+.
T Consensus 227 mEy~~gG~L~~~i~~~~-----l~e~~~~~~~~qil~aL~ylH~~~-----IiHRDiKp~NILl~~~g~vKl~DFGla~~ 296 (423)
T 4fie_A 227 MEFLEGGALTDIVTHTR-----MNEEQIAAVCLAVLQALSVLHAQG-----VIHRDIKSDSILLTHDGRVKLSDFGFCAQ 296 (423)
T ss_dssp EECCTTEEHHHHHHHSC-----CCHHHHHHHHHHHHHHHHHHHHTT-----EECCCCSTTTEEECTTCCEEECCCTTCEE
T ss_pred EECCCCCCHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHCC-----EECCCCCHHHEEECCCCCEEEECCCCCEE
T ss_conf 96989982898876169-----899999999999999999999889-----04465787778985899989803726547
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 56871134514788878888102235888986640208899999991998852147788742225676400148999989
Q 005586 567 LADDIVFSVLKTSAAMGYLAPEYVTTGRFTERSDIFAFGVIILQILTGSLVLTSSMRLAAESATFENFIDRNLKGKFSES 646 (689)
Q Consensus 567 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (689)
+..... ......||+.|||||++.+..|+.++||||+||++|||++|+.||.+............ ...+ .......
T Consensus 297 ~~~~~~-~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~-~~~~--~~~~~~~ 372 (423)
T 4fie_A 297 VSKEVP-RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRD-NLPP--RLKNLHK 372 (423)
T ss_dssp CCSSCC-CBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHH-SCCC--CCSCTTS
T ss_pred CCCCCC-CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC-CCCC--CCCCCCC
T ss_conf 778876-43466647472799997799999689999999999999978799898699999999972-7998--8765012
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 9999999999811179999999999999998608
Q 005586 647 EAAKLGKMALVCTHEDPENRPTMEAVIEELTVAA 680 (689)
Q Consensus 647 ~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~ 680 (689)
.+.++.+++.+||+.||++||++.|+++|.|...
T Consensus 373 ~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~ 406 (423)
T 4fie_A 373 VSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAK 406 (423)
T ss_dssp SCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGG
T ss_pred CCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCC
T ss_conf 9999999999986789568909999960987568
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=383.39 Aligned_cols=258 Identities=17% Similarity=0.206 Sum_probs=209.6
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEC-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEE
Q ss_conf 05884542154885209999955-99399999902468762799999999998514899511486689718998189999
Q 005586 409 QCFSEVNLLGKGNFSSVYKGTLR-DGTLVAIRSINVTSCKSEEAEFVKGLYLLTSLRHENIIRLRGFCCSRGRGECFLIY 487 (689)
Q Consensus 409 ~~f~~~~~lg~G~~g~Vy~~~~~-~g~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~~~lv~ 487 (689)
+.|...+.||+|+||.||+|+++ +|+.||+|+++.... ..+|+.++++++|||||++++++.+ ....|+||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~------~~~E~~il~~l~HpnIV~l~~~~~~--~~~~~ivm 129 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF------RVEELVACAGLSSPRIVPLYGAVRE--GPWVNIFM 129 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC------CTHHHHTTTTCCCTTBCCEEEEEEE--TTEEEEEE
T ss_pred HHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH------HHHHHHHHHHCCCCCCCCEEEEEEE--CCEEEEEE
T ss_conf 351768685138780999999889998999999788886------9999999985799899939999998--99999999
Q ss_pred ECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCC-CEEEECCCCCCC
Q ss_conf 7289999888860017999878999999999999999755307999999636258799866545999-807803565334
Q 005586 488 DFAPKGKLSKYLDQEEGSSNVLDWSTRVSIIIGIAKGIGYLHSSEVNKPAIVHRNLSVEKVLIDQQF-NPLIADCGLHKL 566 (689)
Q Consensus 488 e~~~~gsL~~~l~~~~~~~~~l~~~~~~~ia~~ia~gL~~LH~~~~~~~~ivH~dlk~~Nill~~~~-~~kl~Dfgla~~ 566 (689)
||+++|+|.+++.... .+++..+..|+.|++.||+|||+.+ |+||||||+|||++.++ .+||+|||+|+.
T Consensus 130 Ey~~gg~L~~~l~~~~----~l~e~~~~~~~~qi~~aL~ylH~~~-----IiHRDlKp~NILl~~~g~~vKl~DFGla~~ 200 (336)
T 4g3f_A 130 ELLEGGSLGQLIKQMG----CLPEDRALYYLGQALEGLEYLHTRR-----ILHGDVKADNVLLSSDGSRAALCDFGHALC 200 (336)
T ss_dssp CCCTTCBHHHHHHHHS----SCCHHHHHHHHHHHHHHHHHHHTTT-----EECSCCCGGGEEECTTSCCEEECCCTTCEE
T ss_pred ECCCCCCHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHCC-----CEECCCCHHHEEEECCCCEEEEEECCCCEE
T ss_conf 6659986999998769----9999999999999999999999889-----042616778879958999799962787768
Q ss_pred CCCCCEE----EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC-CCC
Q ss_conf 5687113----45147888788881022358889866402088999999919988521477887422256764001-489
Q 005586 567 LADDIVF----SVLKTSAAMGYLAPEYVTTGRFTERSDIFAFGVIILQILTGSLVLTSSMRLAAESATFENFIDRN-LKG 641 (689)
Q Consensus 567 ~~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~-~~~ 641 (689)
+..+... ......||+.|||||++.+..|+.++||||+||++|||+||+.||........ +..+.... ...
T Consensus 201 ~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~----~~~i~~~~~~~~ 276 (336)
T 4g3f_A 201 LQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL----CLKIASEPPPIR 276 (336)
T ss_dssp C------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC----HHHHHHSCCGGG
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH----HHHHHCCCCCCH
T ss_conf 5678765402217854558020089998899989089999999999999978699899899999----999980899800
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHC----CCCCCCC
Q ss_conf 999899999999999811179999999999999998608----7542344
Q 005586 642 KFSESEAAKLGKMALVCTHEDPENRPTMEAVIEELTVAA----PVMATFL 687 (689)
Q Consensus 642 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~evl~~L~~~~----~~~~~~~ 687 (689)
.++...+..+.+++.+||++||.+|||+.|++++|..+. ....+|+
T Consensus 277 ~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~ 326 (336)
T 4g3f_A 277 EIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWK 326 (336)
T ss_dssp GSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSS
T ss_pred HCCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 25866799999999997628976895999999999999754432169876
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=379.22 Aligned_cols=253 Identities=21% Similarity=0.271 Sum_probs=211.4
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEC-CCCEEEEEEECCCCC--CHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEE
Q ss_conf 05884542154885209999955-993999999024687--627999999999985148995114866897189981899
Q 005586 409 QCFSEVNLLGKGNFSSVYKGTLR-DGTLVAIRSINVTSC--KSEEAEFVKGLYLLTSLRHENIIRLRGFCCSRGRGECFL 485 (689)
Q Consensus 409 ~~f~~~~~lg~G~~g~Vy~~~~~-~g~~vaiK~~~~~~~--~~~~~~~~~e~~~l~~l~h~niv~l~~~~~~~~~~~~~l 485 (689)
++|+..+.||+|+||.||+|+.+ +++.||+|++.+... ......+.+|++++++++|||||++++++ .+.+..|+
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~--~~~~~~yi 109 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTF--QDDEKLYF 109 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEE--ECSSEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE--EECCEEEE
T ss_conf 2368988983164849999999999989999998888877978999999999999867998989199999--73898999
Q ss_pred EEECCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCEEECCCCCEEEECCCCCC
Q ss_conf 99728999988886001799987899999999999999975530799999963625879986654599980780356533
Q 005586 486 IYDFAPKGKLSKYLDQEEGSSNVLDWSTRVSIIIGIAKGIGYLHSSEVNKPAIVHRNLSVEKVLIDQQFNPLIADCGLHK 565 (689)
Q Consensus 486 v~e~~~~gsL~~~l~~~~~~~~~l~~~~~~~ia~~ia~gL~~LH~~~~~~~~ivH~dlk~~Nill~~~~~~kl~Dfgla~ 565 (689)
||||+++|+|.+++..... +++..+..++.|++.||+|||+.+ |+||||||+|||+++++.+||+|||+|+
T Consensus 110 vmEy~~gG~L~~~i~~~~~----l~e~~~~~~~~qi~~al~ylH~~~-----IiHRDlKPeNILl~~~g~vKl~DFGla~ 180 (311)
T 4aw0_A 110 GLSYAKNGELLKYIRKIGS----FDETCTRFYTAEIVSALEYLHGKG-----IIHRDLKPENILLNEDMHIQITDFGTAK 180 (311)
T ss_dssp EECCCTTEEHHHHHHHHSS----CCHHHHHHHHHHHHHHHHHHHHTT-----EECSCCSGGGEEECTTSCEEECCCTTCE
T ss_pred EEECCCCCCHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCCHHHEEECCCCCEEEEECCCCE
T ss_conf 9964899899999987499----999999999999999999999887-----8268787899698589888998768750
Q ss_pred CCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 4568711-345147888788881022358889866402088999999919988521477887422256764001489999
Q 005586 566 LLADDIV-FSVLKTSAAMGYLAPEYVTTGRFTERSDIFAFGVIILQILTGSLVLTSSMRLAAESATFENFIDRNLKGKFS 644 (689)
Q Consensus 566 ~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (689)
.+..... .......||+.|+|||++.+..|+.++||||+||++|||+||+.||......... ..+.... ..++
T Consensus 181 ~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~----~~i~~~~--~~~p 254 (311)
T 4aw0_A 181 VLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIF----AKIIKLE--YDFP 254 (311)
T ss_dssp ECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH----HHHHHTC--CCCC
T ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH----HHHHCCC--CCCC
T ss_conf 257787765436755680307998976899996898998999999997498998997999999----9997199--9999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHH------HHHHHH
Q ss_conf 8999999999998111799999999999------999986
Q 005586 645 ESEAAKLGKMALVCTHEDPENRPTMEAV------IEELTV 678 (689)
Q Consensus 645 ~~~~~~~~~l~~~Cl~~dP~~RPs~~ev------l~~L~~ 678 (689)
...+.++.+++.+||+.||++||++.|+ ++|.|.
T Consensus 255 ~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F 294 (311)
T 4aw0_A 255 EKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFF 294 (311)
T ss_dssp TTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGG
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHHHCCCHHHHCCCCC
T ss_conf 6569999999999762897578096797587798779875
Done!