Query 005587
Match_columns 689
No_of_seqs 463 out of 5640
Neff 8.4
Searched_HMMs 29240
Date Tue Mar 26 18:33:01 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005587.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2093-2097//hhsearch_pdb/005587hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9d_A Serine/threonine-protei 1.0 1 1 280.6 12.5 175 509-688 24-200 (350)
2 4fie_A Serine/threonine-protei 1.0 1 1 275.1 14.2 171 508-688 150-322 (423)
3 4asz_A BDNF/NT-3 growth factor 1.0 1 1 274.2 11.4 174 509-687 13-204 (299)
4 4fih_A Serine/threonine-protei 1.0 1 1 273.3 13.5 170 508-687 73-244 (346)
5 4aoj_A High affinity nerve gro 1.0 1 1 273.2 14.7 175 509-688 41-235 (329)
6 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 272.9 13.3 173 509-688 32-209 (311)
7 3omv_A RAF proto-oncogene seri 1.0 1 1 271.8 14.3 170 508-686 35-207 (307)
8 4gt4_A Tyrosine-protein kinase 1.0 1 1 270.7 11.5 174 510-687 27-221 (308)
9 3ubd_A Ribosomal protein S6 ki 1.0 1 1 267.7 7.1 173 509-688 24-201 (304)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 266.6 13.3 166 509-688 58-231 (336)
No 1
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=280.65 Aligned_cols=175 Identities=21% Similarity=0.373 Sum_probs=153.9
Q ss_pred CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEE
Q ss_conf 5977444471028738999993-899699999933545885669999999999813899872000179995996999981
Q 005587 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE 587 (689)
Q Consensus 509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E 587 (689)
++|.+.+.||+|+||+||+|+. .+|+.||||++............+.+|+.++++++|||||++++++.+.+..|+|||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 25588479702779399999988999899999986587897999999999999987799898919999998999999994
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 36889988998319545789999999999999999999999499998198044689858669994999861477655699
Q 005587 588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667 (689)
Q Consensus 588 y~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~ 667 (689)
||+||+|.+++.... ...+++.....|+.|++.||.|||+. +|+||||||+|||++.++.+||+|||+|+.+...
T Consensus 104 y~~gg~L~~~i~~~~--~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQK--GVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp CCTTCBHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred CCCCCCHHHHHHHCC--CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCHHHEEECCCCCEEECCCCCCEEECCC
T ss_conf 889983999999738--99997899999999999999999989---9151359789979878999897646521440688
Q ss_pred C-CCEEECCCCEEEECCCCCCC
Q ss_conf 8-42011562349921102337
Q 005587 668 S-VSQVSHNLTIMRAGGVTHRN 688 (689)
Q Consensus 668 ~-~~~~~~~~~~~~ape~~~~~ 688 (689)
. ......+|..|+|||++.+.
T Consensus 179 ~~~~~~~~GT~~YmAPE~l~~~ 200 (350)
T 4b9d_A 179 VELARACIGTPYYLSPEICENK 200 (350)
T ss_dssp HHHHHHHHSCCTTCCHHHHTTC
T ss_pred CCCCCCCCCCCCCCCHHHHCCC
T ss_conf 5410145788360399998799
No 2
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=275.07 Aligned_cols=171 Identities=26% Similarity=0.353 Sum_probs=149.9
Q ss_pred CCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEE
Q ss_conf 15977444471028738999993-89969999993354588566999999999981389987200017999599699998
Q 005587 508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY 586 (689)
Q Consensus 508 ~~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~ 586 (689)
.+.|+..+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|+.+|++++|||||++++++.+.+..|+||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~--~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVm 227 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 227 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTC--SSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCH--HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 6843861696248184899999999998999999862554--68999999999998579989871689999899999999
Q ss_pred ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCC
Q ss_conf 13688998899831954578999999999999999999999949999819804468985866999499986147765569
Q 005587 587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666 (689)
Q Consensus 587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~ 666 (689)
|||+||+|.+++.. ..+++.....|+.|++.||.|||+. +||||||||+|||++.++.+||+|||+|+.+..
T Consensus 228 Ey~~gG~L~~~i~~-----~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~ 299 (423)
T 4fie_A 228 EFLEGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 299 (423)
T ss_dssp ECCTTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCS
T ss_pred ECCCCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf 69899828988761-----6989999999999999999999988---904465787778985899989803726547778
Q ss_pred C-CCCEEECCCCEEEECCCCCCC
Q ss_conf 9-842011562349921102337
Q 005587 667 G-SVSQVSHNLTIMRAGGVTHRN 688 (689)
Q Consensus 667 ~-~~~~~~~~~~~~~ape~~~~~ 688 (689)
. .......++.+|+|||++.+.
T Consensus 300 ~~~~~~~~~GTp~YmAPEvl~~~ 322 (423)
T 4fie_A 300 EVPRRKSLVGTPYWMAPELISRL 322 (423)
T ss_dssp SCCCBCCCEECTTTCCHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 87643466647472799997799
No 3
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=274.17 Aligned_cols=174 Identities=23% Similarity=0.383 Sum_probs=149.1
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEE
Q ss_conf 59774444710287389999938------996999999335458856699999999998138998720001799959969
Q 005587 509 NSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR 582 (689)
Q Consensus 509 ~~f~~~~~lG~G~~g~Vy~~~~~------~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~ 582 (689)
++|.+.+.||+|+||.||+|++. ++..||||+++.. .....++|.+|+.++++++|||||+++|+|.+.+..
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 90 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA--SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL 90 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC--CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCC--CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEE
T ss_conf 892982498207882999999877666778879999996777--858999999999999858998886287999569989
Q ss_pred EEEEECCCCCCHHHHHHCCC---------CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCE
Q ss_conf 99981368899889983195---------457899999999999999999999994999981980446898586699949
Q 005587 583 LLIYEYCSNGTLQDMLHSDD---------ELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAV 653 (689)
Q Consensus 583 ~lV~Ey~~~GsL~~~l~~~~---------~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ 653 (689)
++|||||++|+|.++++... .....++|..+++|+.|+|.||.|||+. +|+||||||+|||++.++.+
T Consensus 91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~ 167 (299)
T 4asz_A 91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLV 167 (299)
T ss_dssp EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCE
T ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCE
T ss_conf 999985899968999986086421112357778899999999999999999999759---90467657763898799868
Q ss_pred EEEEECCCCCCCCCCCCEE---ECCCCEEEECCCCCC
Q ss_conf 9986147765569984201---156234992110233
Q 005587 654 SVSDCGLAPLISSGSVSQV---SHNLTIMRAGGVTHR 687 (689)
Q Consensus 654 ki~DFGla~~~~~~~~~~~---~~~~~~~~ape~~~~ 687 (689)
||+|||+|+.......... ..++..|+|||++.+
T Consensus 168 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~ 204 (299)
T 4asz_A 168 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMY 204 (299)
T ss_dssp EECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHH
T ss_pred EECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCC
T ss_conf 9887300100678874166475134701038898707
No 4
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=273.26 Aligned_cols=170 Identities=26% Similarity=0.361 Sum_probs=149.3
Q ss_pred CCCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEE
Q ss_conf 15977444471028738999993-89969999993354588566999999999981389987200017999599699998
Q 005587 508 TNSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY 586 (689)
Q Consensus 508 ~~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~ 586 (689)
.+.|+..+.||+|+||.||+|+. .+|+.||||++..... ...+.+.+|+.++++++|||||++++++.+.+..|+||
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~--~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivm 150 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ--QRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM 150 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGC--SSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCH--HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 5753870796027282999999989998999999852765--68999999999998679989991999999899999999
Q ss_pred ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCC
Q ss_conf 13688998899831954578999999999999999999999949999819804468985866999499986147765569
Q 005587 587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666 (689)
Q Consensus 587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~ 666 (689)
|||+||+|.+++.. ..+++.....|+.|++.||.|||+. +||||||||+|||++.++.+||+|||+|+.+..
T Consensus 151 Ey~~gg~L~~~l~~-----~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 222 (346)
T 4fih_A 151 EFLEGGALTDIVTH-----TRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 222 (346)
T ss_dssp CCCTTEEHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred ECCCCCCHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf 69899808999871-----8989999999999999999999988---835562788997887999889902757536678
Q ss_pred C-CCCEEECCCCEEEECCCCCC
Q ss_conf 9-84201156234992110233
Q 005587 667 G-SVSQVSHNLTIMRAGGVTHR 687 (689)
Q Consensus 667 ~-~~~~~~~~~~~~~ape~~~~ 687 (689)
. .......+|..|+|||++.+
T Consensus 223 ~~~~~~~~~GTp~YmAPEvl~~ 244 (346)
T 4fih_A 223 EVPRRKSLVGTPYWMAPELISR 244 (346)
T ss_dssp SSCCBCCCCSCGGGCCHHHHTT
T ss_pred CCCCCCCCCCCCCCCCHHHHCC
T ss_conf 8775346562758279999779
No 5
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=273.23 Aligned_cols=175 Identities=24% Similarity=0.353 Sum_probs=149.3
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEE
Q ss_conf 59774444710287389999938------996999999335458856699999999998138998720001799959969
Q 005587 509 NSFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQR 582 (689)
Q Consensus 509 ~~f~~~~~lG~G~~g~Vy~~~~~------~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~ 582 (689)
++|...+.||+|+||.||+|++. ++..||||+++.. .....++|.+|+.++++++|||||+++|+|.+.+..
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~--~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~ 118 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA--SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPL 118 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC--SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCC--CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEE
T ss_conf 992887797147784899899878665778969999997757--979999999999999858998999698999989989
Q ss_pred EEEEECCCCCCHHHHHHCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCC
Q ss_conf 999813688998899831954-----------578999999999999999999999949999819804468985866999
Q 005587 583 LLIYEYCSNGTLQDMLHSDDE-----------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL 651 (689)
Q Consensus 583 ~lV~Ey~~~GsL~~~l~~~~~-----------~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~ 651 (689)
++|||||++|+|.++++.... ....++|..++.|+.|||+||.|||+. +||||||||+|||++.++
T Consensus 119 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~ 195 (329)
T 4aoj_A 119 LMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGL 195 (329)
T ss_dssp EEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTT
T ss_pred EEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CEECCCCCHHHEEECCCC
T ss_conf 99998279993999998607541001221124578899999999999999999998408---842266667648988999
Q ss_pred CEEEEEECCCCCCCCCCCC---EEECCCCEEEECCCCCCC
Q ss_conf 4999861477655699842---011562349921102337
Q 005587 652 AVSVSDCGLAPLISSGSVS---QVSHNLTIMRAGGVTHRN 688 (689)
Q Consensus 652 ~~ki~DFGla~~~~~~~~~---~~~~~~~~~~ape~~~~~ 688 (689)
.+||+|||+|+.+...... ....++..|+|||++.+.
T Consensus 196 ~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~ 235 (329)
T 4aoj_A 196 VVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYR 235 (329)
T ss_dssp EEEECCCC----------------CCCCGGGCCHHHHTTC
T ss_pred CEEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCC
T ss_conf 6897666033365678753004764556566582654479
No 6
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=272.91 Aligned_cols=173 Identities=23% Similarity=0.309 Sum_probs=150.4
Q ss_pred CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCC-HHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEE
Q ss_conf 5977444471028738999993-89969999993354588-566999999999981389987200017999599699998
Q 005587 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASS-QQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIY 586 (689)
Q Consensus 509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~-~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~ 586 (689)
++|++.+.||+|+||+||+|+. .+++.||||.+.+.... ......+.+|++++++++|||||++++++.+.+..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred ECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCC
Q ss_conf 13688998899831954578999999999999999999999949999819804468985866999499986147765569
Q 005587 587 EYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISS 666 (689)
Q Consensus 587 Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~ 666 (689)
|||+||+|.+++.. ...+++.....|+.|++.||.|||+. +|+||||||+|||++.++.+||+|||+|+.+..
T Consensus 112 Ey~~gG~L~~~i~~----~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~ 184 (311)
T 4aw0_A 112 SYAKNGELLKYIRK----IGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSP 184 (311)
T ss_dssp CCCTTEEHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred ECCCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEECCC
T ss_conf 64899899999987----49999999999999999999999988---782687878996985898889987687502577
Q ss_pred CCC---CEEECCCCEEEECCCCCCC
Q ss_conf 984---2011562349921102337
Q 005587 667 GSV---SQVSHNLTIMRAGGVTHRN 688 (689)
Q Consensus 667 ~~~---~~~~~~~~~~~ape~~~~~ 688 (689)
... .....+|..|+|||++.++
T Consensus 185 ~~~~~~~~~~~GTp~YmAPEvl~~~ 209 (311)
T 4aw0_A 185 ESKQARANSFVGTAQYVSPELLTEK 209 (311)
T ss_dssp TTTCCCBCCCCSCGGGCCHHHHHHS
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 8776543675568030799897689
No 7
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=271.84 Aligned_cols=170 Identities=27% Similarity=0.430 Sum_probs=146.4
Q ss_pred CCCCCCCCEEEECCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEE
Q ss_conf 15977444471028738999993899699999933545885669999999999813899872000179995996999981
Q 005587 508 TNSFSQENLIGAGMLGSVYRAQLPDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE 587 (689)
Q Consensus 508 ~~~f~~~~~lG~G~~g~Vy~~~~~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E 587 (689)
.+++...+.||+|+||+||+|++.+ .||||.++.........++|.+|+.++++++|||||+++|+|.+ +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEECC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEEE
T ss_conf 7994984498208886899999899--68999997268999999999999999985899887469999978-95899997
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 36889988998319545789999999999999999999999499998198044689858669994999861477655699
Q 005587 588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLISSG 667 (689)
Q Consensus 588 y~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~~~~ 667 (689)
||+||+|.++++.. ...++|..++.|+.|+|+||.|||+. +||||||||+|||+++++.+||+|||+|+.....
T Consensus 112 y~~gGsL~~~l~~~---~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 112 WCEGSSLYKHLHVQ---ETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp CCSSCBHHHHHHTS---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred CCCCCCHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 48998788987524---89999999999999999999999779---9527855789978889990899441575424667
Q ss_pred CC---CEEECCCCEEEECCCCC
Q ss_conf 84---20115623499211023
Q 005587 668 SV---SQVSHNLTIMRAGGVTH 686 (689)
Q Consensus 668 ~~---~~~~~~~~~~~ape~~~ 686 (689)
.. .....++..|+|||++.
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~ 207 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIR 207 (307)
T ss_dssp --------CCCCTTSCCHHHHH
T ss_pred CCCEEECCCCCCCCCCCHHHHH
T ss_conf 7640315644687724987861
No 8
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=270.72 Aligned_cols=174 Identities=25% Similarity=0.351 Sum_probs=146.2
Q ss_pred CCCCCCEEEECCCEEEEEEEEC------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEE
Q ss_conf 9774444710287389999938------9969999993354588566999999999981389987200017999599699
Q 005587 510 SFSQENLIGAGMLGSVYRAQLP------DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRL 583 (689)
Q Consensus 510 ~f~~~~~lG~G~~g~Vy~~~~~------~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~ 583 (689)
+++..+.||+|+||+||+|++. +++.||||++..... ....++|.+|+.++++++|||||+++|+|.+.+..+
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~-~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAE-GPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CC-C-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEE
T ss_conf 8858669135888489999985776588886999999880149-689999999999998589989877364998899889
Q ss_pred EEEECCCCCCHHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCC
Q ss_conf 99813688998899831954------------578999999999999999999999949999819804468985866999
Q 005587 584 LIYEYCSNGTLQDMLHSDDE------------LKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL 651 (689)
Q Consensus 584 lV~Ey~~~GsL~~~l~~~~~------------~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~ 651 (689)
+|||||++|+|.++++.... ....++|..+++|+.|||+||.|||+. +||||||||+|||+++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEECCCC
T ss_conf 99981899949999986276543333221111246899999999999999999999868---997787362306887999
Q ss_pred CEEEEEECCCCCCCCCCCC---EEECCCCEEEECCCCCC
Q ss_conf 4999861477655699842---01156234992110233
Q 005587 652 AVSVSDCGLAPLISSGSVS---QVSHNLTIMRAGGVTHR 687 (689)
Q Consensus 652 ~~ki~DFGla~~~~~~~~~---~~~~~~~~~~ape~~~~ 687 (689)
.+||+|||+|+.+...+.. ....++..|+|||++.+
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~ 221 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMY 221 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHH
T ss_pred CEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHC
T ss_conf 789887602023367774047345125776569899827
No 9
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=1.00 E-value=1 Score=267.73 Aligned_cols=173 Identities=23% Similarity=0.254 Sum_probs=149.2
Q ss_pred CCCCCCCEEEECCCEEEEEEEEC----CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEE
Q ss_conf 59774444710287389999938----99699999933545885669999999999813899872000179995996999
Q 005587 509 NSFSQENLIGAGMLGSVYRAQLP----DGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLL 584 (689)
Q Consensus 509 ~~f~~~~~lG~G~~g~Vy~~~~~----~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~l 584 (689)
++|++.+.||+|+||+||+|+.. +++.||||.+............+.+|+.++++++|||||++++++.+.+..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEE
T ss_conf 56589889721888399999985588789799999981577684789999999999987799799909999998999999
Q ss_pred EEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCCCEEEEEECCCCCC
Q ss_conf 98136889988998319545789999999999999999999999499998198044689858669994999861477655
Q 005587 585 IYEYCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDLAVSVSDCGLAPLI 664 (689)
Q Consensus 585 V~Ey~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~~~ki~DFGla~~~ 664 (689)
|||||+||+|.+++.. ...+++.....|+.|++.||.|||+. +|+||||||+|||++.++.+||+|||+|+..
T Consensus 104 vmEy~~gg~L~~~l~~----~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~ 176 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSK----EVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKES 176 (304)
T ss_dssp EECCCTTCEEHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC-
T ss_pred EEECCCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEECCCCCCEEC
T ss_conf 9975799888999975----59999999999999999999999977---9958888789957868998876236634332
Q ss_pred CCCC-CCEEECCCCEEEECCCCCCC
Q ss_conf 6998-42011562349921102337
Q 005587 665 SSGS-VSQVSHNLTIMRAGGVTHRN 688 (689)
Q Consensus 665 ~~~~-~~~~~~~~~~~~ape~~~~~ 688 (689)
.... ......+|..|+|||++.+.
T Consensus 177 ~~~~~~~~~~~GT~~YmAPE~~~~~ 201 (304)
T 3ubd_A 177 IDHEKKAYSFCGTVEYMAPEVVNRR 201 (304)
T ss_dssp ----CCCCSCCCCGGGCCHHHHHTS
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 6887630454418150799996568
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=266.59 Aligned_cols=166 Identities=23% Similarity=0.255 Sum_probs=143.7
Q ss_pred CCCCCCCEEEECCCEEEEEEEE-CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECEEEEECCEEEEEEE
Q ss_conf 5977444471028738999993-899699999933545885669999999999813899872000179995996999981
Q 005587 509 NSFSQENLIGAGMLGSVYRAQL-PDGKLLAVKKLDKRASSQQKDDEFLELVNNIDRIRHANIVELKGYCAEHGQRLLIYE 587 (689)
Q Consensus 509 ~~f~~~~~lG~G~~g~Vy~~~~-~~g~~vAVK~i~~~~~~~~~~~~~~~e~~~l~~l~Hpniv~l~~~~~~~~~~~lV~E 587 (689)
+.|...++||+|+||.||+|+. .+|+.||||++..... ..+|+.++++++|||||++++++.+.+..|+|||
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE 130 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFME 130 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred HHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH-------HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 351768685138780999999889998999999788886-------9999999985799899939999998999999996
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEECCCC-CEEEEEECCCCCCCC
Q ss_conf 3688998899831954578999999999999999999999949999819804468985866999-499986147765569
Q 005587 588 YCSNGTLQDMLHSDDELKNNLSWNTRIRMALGAARALEYLHEICQPPIVHRNFKSANILLDDDL-AVSVSDCGLAPLISS 666 (689)
Q Consensus 588 y~~~GsL~~~l~~~~~~~~~l~~~~~~~i~~~ia~aL~yLH~~~~~~IiHrDlkp~NILld~~~-~~ki~DFGla~~~~~ 666 (689)
||+||+|.++++. ...+++.....|+.|++.||.|||+. +||||||||+|||++.++ .+||+|||+|+.+..
T Consensus 131 y~~gg~L~~~l~~----~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~ 203 (336)
T 4g3f_A 131 LLEGGSLGQLIKQ----MGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQP 203 (336)
T ss_dssp CCTTCBHHHHHHH----HSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC--
T ss_pred CCCCCCHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCEECCCCHHHEEEECCCCEEEEEECCCCEECCC
T ss_conf 6599869999987----69999999999999999999999988---9042616778879958999799962787768567
Q ss_pred CCCCE------EECCCCEEEECCCCCCC
Q ss_conf 98420------11562349921102337
Q 005587 667 GSVSQ------VSHNLTIMRAGGVTHRN 688 (689)
Q Consensus 667 ~~~~~------~~~~~~~~~ape~~~~~ 688 (689)
..... ...+|..|+|||++.+.
T Consensus 204 ~~~~~~~~~~~~~~GT~~YmAPE~~~~~ 231 (336)
T 4g3f_A 204 DGLGKSLLTGDYIPGTETHMAPEVVMGK 231 (336)
T ss_dssp ----------CCCCCCGGGCCHHHHTTC
T ss_pred CCCCCCEECCCCCCCCCCCCCHHHHCCC
T ss_conf 8765402217854558020089998899
Done!