Query 005588
Match_columns 689
No_of_seqs 453 out of 2374
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 01:49:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005588.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005588hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4271 Rho-GTPase activating 100.0 3E-50 6.4E-55 452.7 22.8 565 97-678 286-892 (1100)
2 cd04372 RhoGAP_chimaerin RhoGA 100.0 6.7E-41 1.4E-45 334.9 19.8 189 166-372 1-194 (194)
3 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 6.3E-41 1.4E-45 334.6 18.3 192 165-376 1-192 (192)
4 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.2E-40 2.7E-45 335.2 20.0 197 163-375 2-202 (203)
5 cd04390 RhoGAP_ARHGAP22_24_25 100.0 2.3E-40 5E-45 332.3 19.1 191 164-372 1-199 (199)
6 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 4.7E-40 1E-44 334.0 20.1 200 165-376 1-209 (216)
7 cd04407 RhoGAP_myosin_IXB RhoG 100.0 5.6E-40 1.2E-44 326.1 19.6 185 166-367 1-186 (186)
8 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 7.2E-40 1.6E-44 333.3 19.4 210 163-376 2-218 (220)
9 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 5.9E-40 1.3E-44 324.9 17.0 176 166-374 1-181 (182)
10 KOG1451 Oligophrenin-1 and rel 100.0 3.1E-38 6.8E-43 341.6 31.1 304 14-376 260-571 (812)
11 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 1.7E-39 3.7E-44 324.9 18.0 190 164-367 1-195 (195)
12 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 2E-39 4.3E-44 328.8 18.4 192 166-376 1-211 (213)
13 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 2.7E-39 5.9E-44 321.7 18.0 184 164-367 1-188 (188)
14 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 3.5E-39 7.7E-44 320.7 18.5 183 166-367 1-187 (187)
15 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 5.1E-39 1.1E-43 321.5 19.3 190 162-372 2-195 (195)
16 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 6.1E-39 1.3E-43 321.3 19.7 190 165-372 1-196 (196)
17 cd04406 RhoGAP_myosin_IXA RhoG 100.0 5.2E-39 1.1E-43 319.1 18.0 183 166-365 1-184 (186)
18 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 7.7E-39 1.7E-43 321.4 18.6 186 166-367 1-200 (200)
19 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 2E-38 4.4E-43 318.9 19.9 195 165-376 1-199 (202)
20 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 2.2E-38 4.9E-43 323.5 18.5 188 165-372 1-225 (225)
21 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 3.1E-38 6.8E-43 318.2 19.2 187 177-376 6-204 (206)
22 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 2.8E-38 6E-43 315.4 17.6 185 166-372 1-192 (192)
23 cd04377 RhoGAP_myosin_IX RhoGA 100.0 4.4E-38 9.5E-43 312.6 18.8 185 166-367 1-186 (186)
24 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 3.6E-38 7.8E-43 317.3 18.0 187 166-367 1-203 (203)
25 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 3.4E-38 7.4E-43 314.4 17.2 177 165-374 1-189 (190)
26 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 5.8E-38 1.3E-42 311.4 18.6 161 166-327 1-163 (185)
27 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 6.2E-38 1.3E-42 317.3 18.9 187 166-367 1-211 (211)
28 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 1.7E-37 3.6E-42 309.2 18.7 184 164-367 1-189 (189)
29 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 3.4E-37 7.4E-42 308.4 20.1 163 166-329 1-167 (196)
30 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 2.6E-37 5.6E-42 312.0 18.5 186 166-376 1-200 (208)
31 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 4.3E-37 9.4E-42 309.9 19.9 195 166-368 1-206 (207)
32 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 3.3E-36 7.1E-41 298.7 18.8 180 167-368 2-184 (184)
33 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 6.1E-36 1.3E-40 298.7 19.1 177 177-370 14-191 (193)
34 KOG4407 Predicted Rho GTPase-a 100.0 2.8E-37 6E-42 353.6 10.0 339 18-376 922-1358(1973)
35 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 4.4E-36 9.5E-41 298.4 17.2 178 166-367 1-187 (187)
36 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 5.9E-36 1.3E-40 302.9 17.5 189 166-374 1-210 (212)
37 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 1.8E-35 3.8E-40 297.4 18.0 171 178-367 26-203 (203)
38 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 4.2E-35 9.2E-40 292.7 17.8 177 170-368 5-184 (200)
39 KOG1450 Predicted Rho GTPase-a 100.0 2.8E-32 6.1E-37 305.2 19.0 320 34-373 270-649 (650)
40 smart00324 RhoGAP GTPase-activ 100.0 6.8E-32 1.5E-36 264.3 18.0 170 179-367 2-173 (174)
41 KOG1117 Rho- and Arf-GTPase ac 100.0 3.7E-32 8.1E-37 303.9 17.0 323 17-376 490-900 (1186)
42 KOG4270 GTPase-activator prote 100.0 1.6E-30 3.5E-35 290.6 28.4 295 33-378 49-349 (577)
43 KOG2200 Tumour suppressor prot 100.0 2.6E-31 5.7E-36 289.7 15.3 209 162-376 297-514 (674)
44 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 1.6E-30 3.5E-35 264.9 15.1 142 179-327 49-195 (220)
45 cd00159 RhoGAP RhoGAP: GTPase- 100.0 9.8E-30 2.1E-34 246.4 18.5 168 181-367 1-169 (169)
46 KOG4269 Rac GTPase-activating 100.0 4.3E-30 9.4E-35 289.0 12.5 186 159-377 893-1088(1112)
47 KOG4406 CDC42 Rho GTPase-activ 100.0 3.7E-29 7.9E-34 264.8 14.2 202 157-378 245-451 (467)
48 PF00620 RhoGAP: RhoGAP domain 100.0 3.6E-29 7.9E-34 238.9 9.5 145 181-326 1-147 (151)
49 KOG2710 Rho GTPase-activating 99.9 1.2E-27 2.6E-32 258.6 15.4 206 160-376 61-295 (412)
50 KOG4724 Predicted Rho GTPase-a 99.9 1E-27 2.2E-32 264.4 8.0 241 159-422 76-316 (741)
51 KOG1453 Chimaerin and related 99.9 8.3E-25 1.8E-29 261.6 11.3 162 165-327 602-771 (918)
52 KOG3564 GTPase-activating prot 99.9 1.7E-23 3.6E-28 223.8 15.9 181 179-376 361-546 (604)
53 KOG4271 Rho-GTPase activating 99.8 8.2E-19 1.8E-23 199.7 8.5 161 162-323 914-1076(1100)
54 KOG1452 Predicted Rho GTPase-a 99.7 1.8E-17 3.8E-22 170.4 11.5 163 164-327 183-353 (442)
55 cd01233 Unc104 Unc-104 pleckst 99.7 7.6E-17 1.7E-21 144.7 11.8 92 19-124 2-98 (100)
56 cd04405 RhoGAP_BRCC3-like RhoG 99.7 2.7E-16 5.8E-21 158.5 12.8 185 164-376 20-232 (235)
57 cd01251 PH_centaurin_alpha Cen 99.7 2.3E-16 5E-21 142.4 11.2 91 21-125 1-101 (103)
58 cd01264 PH_melted Melted pleck 99.7 3.8E-16 8.3E-21 139.9 10.1 91 21-124 2-101 (101)
59 cd01260 PH_CNK Connector enhan 99.6 1.5E-15 3.2E-20 134.9 11.0 92 21-123 2-96 (96)
60 cd01265 PH_PARIS-1 PARIS-1 ple 99.6 2.2E-15 4.7E-20 134.1 10.8 88 22-123 2-93 (95)
61 cd01238 PH_Tec Tec pleckstrin 99.6 1.9E-15 4.2E-20 137.1 10.0 94 20-123 1-106 (106)
62 cd01252 PH_cytohesin Cytohesin 99.6 5.2E-15 1.1E-19 138.0 12.1 99 20-129 1-118 (125)
63 cd01235 PH_SETbf Set binding f 99.6 3.9E-15 8.4E-20 132.9 10.5 90 21-124 1-101 (101)
64 cd01247 PH_GPBP Goodpasture an 99.6 1.2E-14 2.5E-19 128.5 10.6 89 22-122 2-90 (91)
65 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.6 1.4E-14 3.1E-19 144.5 11.2 144 182-327 8-166 (198)
66 cd01241 PH_Akt Akt pleckstrin 99.5 3.6E-14 7.7E-19 127.9 11.1 97 19-123 1-101 (102)
67 cd01236 PH_outspread Outspread 99.5 2.1E-14 4.7E-19 129.6 9.3 90 21-122 1-102 (104)
68 cd01266 PH_Gab Gab (Grb2-assoc 99.5 8.8E-14 1.9E-18 126.6 10.2 88 22-123 2-107 (108)
69 cd01257 PH_IRS Insulin recepto 99.5 9.7E-14 2.1E-18 124.8 10.3 91 19-122 2-100 (101)
70 cd01246 PH_oxysterol_bp Oxyste 99.5 1.6E-13 3.6E-18 119.3 10.4 91 21-123 1-91 (91)
71 cd01250 PH_centaurin Centaurin 99.5 1.8E-13 3.8E-18 119.8 9.6 90 21-122 1-93 (94)
72 PF14389 Lzipper-MIP1: Leucine 99.4 1E-13 2.2E-18 121.5 5.1 65 614-678 1-66 (88)
73 cd01245 PH_RasGAP_CG5898 RAS G 99.4 6.2E-13 1.3E-17 118.8 8.6 88 22-122 2-97 (98)
74 cd01263 PH_anillin Anillin Ple 99.4 1E-12 2.2E-17 121.9 10.0 98 20-123 2-122 (122)
75 cd01244 PH_RasGAP_CG9209 RAS_G 99.4 1.2E-12 2.6E-17 117.1 9.6 77 34-123 18-98 (98)
76 PF00169 PH: PH domain; Inter 99.4 4.4E-12 9.4E-17 111.1 12.8 101 19-124 1-103 (104)
77 cd01230 PH_EFA6 EFA6 Pleckstri 99.3 1.6E-11 3.5E-16 113.2 11.1 101 21-125 2-112 (117)
78 cd01253 PH_beta_spectrin Beta- 99.3 1.1E-11 2.4E-16 111.6 9.4 94 22-122 2-103 (104)
79 KOG0930 Guanine nucleotide exc 99.3 1.3E-11 2.9E-16 125.7 9.2 101 19-130 260-381 (395)
80 PF15413 PH_11: Pleckstrin hom 99.2 3.8E-11 8.2E-16 110.2 9.6 97 21-123 1-112 (112)
81 KOG4370 Ral-GTPase effector RL 99.2 2.6E-11 5.5E-16 129.6 8.0 185 164-381 50-280 (514)
82 cd01237 Unc112 Unc-112 pleckst 99.2 1.7E-10 3.6E-15 103.8 10.0 90 30-124 13-103 (106)
83 KOG3565 Cdc42-interacting prot 99.1 6.7E-11 1.5E-15 136.4 7.9 146 179-326 217-366 (640)
84 PF15409 PH_8: Pleckstrin homo 99.1 3.6E-10 7.9E-15 98.9 10.0 86 23-123 1-88 (89)
85 cd01219 PH_FGD FGD (faciogenit 99.1 5.1E-10 1.1E-14 100.8 11.0 98 19-125 2-100 (101)
86 cd01254 PH_PLD Phospholipase D 99.1 3.6E-10 7.9E-15 105.1 10.2 76 36-123 32-121 (121)
87 PF15410 PH_9: Pleckstrin homo 99.1 1E-09 2.2E-14 101.8 11.1 103 20-124 1-118 (119)
88 smart00233 PH Pleckstrin homol 99.0 2.6E-09 5.6E-14 91.8 11.8 97 19-124 1-101 (102)
89 KOG0690 Serine/threonine prote 98.8 3.6E-09 7.9E-14 111.1 6.2 108 14-127 10-119 (516)
90 cd00821 PH Pleckstrin homology 98.8 1.5E-08 3.2E-13 86.2 8.7 93 21-122 1-95 (96)
91 cd01249 PH_oligophrenin Oligop 98.8 2.7E-08 5.9E-13 89.3 10.1 97 21-121 1-102 (104)
92 cd01256 PH_dynamin Dynamin ple 98.8 2.4E-08 5.2E-13 87.8 8.9 99 19-123 1-104 (110)
93 cd00900 PH-like Pleckstrin hom 98.8 4.6E-08 1E-12 83.8 10.5 93 22-123 2-99 (99)
94 cd01234 PH_CADPS CADPS (Ca2+-d 98.7 1.9E-08 4.1E-13 89.1 4.6 98 20-127 3-113 (117)
95 KOG4724 Predicted Rho GTPase-a 98.7 1.8E-08 3.9E-13 113.2 5.3 169 158-326 409-589 (741)
96 cd01220 PH_CDEP Chondrocyte-de 98.6 3.7E-07 8.1E-12 82.0 11.0 95 19-125 2-98 (99)
97 cd01243 PH_MRCK MRCK (myotonic 98.6 5.7E-07 1.2E-11 82.4 11.9 104 20-123 3-118 (122)
98 KOG1090 Predicted dual-specifi 98.6 1.8E-08 4E-13 116.3 2.7 95 16-124 1631-1731(1732)
99 cd01259 PH_Apbb1ip Apbb1ip (Am 98.6 1.3E-07 2.8E-12 85.4 7.5 101 21-124 2-108 (114)
100 cd01242 PH_ROK Rok (Rho- assoc 98.4 2.7E-06 5.8E-11 77.0 11.7 103 21-125 2-111 (112)
101 KOG3640 Actin binding protein 98.4 4.9E-07 1.1E-11 105.1 6.4 104 16-125 987-1107(1116)
102 PF14593 PH_3: PH domain; PDB: 98.2 7.1E-06 1.5E-10 74.3 10.0 92 15-126 9-101 (104)
103 PF08101 DUF1708: Domain of un 98.2 8.7E-06 1.9E-10 90.3 12.0 146 181-328 9-169 (420)
104 KOG2059 Ras GTPase-activating 98.0 1.7E-05 3.7E-10 90.5 8.1 114 16-144 562-683 (800)
105 KOG3751 Growth factor receptor 97.9 2E-05 4.2E-10 87.4 7.8 106 17-125 315-425 (622)
106 KOG0932 Guanine nucleotide exc 97.8 7.2E-06 1.6E-10 91.1 1.8 123 11-136 498-631 (774)
107 cd01239 PH_PKD Protein kinase 97.7 0.0001 2.3E-09 67.2 7.6 90 20-123 1-117 (117)
108 PLN00188 enhanced disease resi 97.7 0.00018 3.9E-09 83.6 10.4 104 17-127 2-112 (719)
109 cd01218 PH_phafin2 Phafin2 Pl 97.7 0.00038 8.2E-09 63.2 10.3 98 18-126 3-100 (104)
110 cd01258 PH_syntrophin Syntroph 97.6 0.00019 4.2E-09 65.4 7.3 96 22-122 2-107 (108)
111 cd01261 PH_SOS Son of Sevenles 97.6 0.0006 1.3E-08 62.7 10.4 103 17-126 2-111 (112)
112 PTZ00267 NIMA-related protein 97.5 0.00023 4.9E-09 80.9 8.4 101 16-125 374-477 (478)
113 KOG0521 Putative GTPase activa 97.4 0.00018 3.9E-09 85.8 5.5 98 18-127 273-371 (785)
114 KOG0248 Cytoplasmic protein Ma 96.9 0.00058 1.3E-08 77.9 3.1 96 17-125 247-342 (936)
115 cd01262 PH_PDK1 3-Phosphoinosi 96.9 0.0063 1.4E-07 53.5 8.7 86 19-124 1-88 (89)
116 KOG3723 PH domain protein Melt 96.7 0.00094 2E-08 74.9 2.7 97 19-127 735-839 (851)
117 PF12814 Mcp5_PH: Meiotic cell 96.6 0.027 5.9E-07 52.6 11.7 99 24-125 14-122 (123)
118 cd01222 PH_clg Clg (common-sit 96.5 0.027 5.8E-07 50.6 10.5 93 18-124 3-95 (97)
119 KOG3543 Ca2+-dependent activat 96.5 0.00057 1.2E-08 77.0 -0.5 102 16-127 461-568 (1218)
120 PLN02866 phospholipase D 96.5 0.014 3E-07 70.9 10.7 88 35-128 216-311 (1068)
121 PTZ00283 serine/threonine prot 96.5 0.009 1.9E-07 68.5 8.9 37 87-125 454-490 (496)
122 PF15408 PH_7: Pleckstrin homo 96.4 0.001 2.2E-08 57.4 0.7 93 22-122 1-95 (104)
123 KOG1453 Chimaerin and related 96.3 0.0019 4.2E-08 79.0 2.5 161 165-326 462-668 (918)
124 KOG1739 Serine/threonine prote 96.3 0.0041 8.9E-08 68.8 4.6 95 18-125 23-117 (611)
125 KOG3531 Rho guanine nucleotide 96.2 0.0018 3.8E-08 75.6 1.4 94 21-124 926-1019(1036)
126 cd01240 PH_beta-ARK Beta adren 96.0 0.011 2.3E-07 53.7 4.9 94 18-125 2-99 (116)
127 cd01224 PH_Collybistin Collybi 94.9 0.38 8.3E-06 44.1 11.1 100 19-122 2-105 (109)
128 PF15406 PH_6: Pleckstrin homo 94.9 0.05 1.1E-06 49.4 5.3 69 40-121 42-110 (112)
129 KOG4424 Predicted Rho/Rac guan 94.8 0.033 7.1E-07 63.3 4.8 105 14-127 267-372 (623)
130 cd01228 PH_BCR-related BCR (br 94.8 0.13 2.8E-06 45.8 7.4 89 19-124 3-94 (96)
131 cd01221 PH_ephexin Ephexin Ple 94.0 0.65 1.4E-05 43.7 10.9 79 37-121 27-119 (125)
132 PF15404 PH_4: Pleckstrin homo 94.0 0.31 6.6E-06 48.8 9.1 34 21-56 1-34 (185)
133 cd01232 PH_TRIO Trio pleckstri 93.9 1.3 2.8E-05 41.0 12.5 87 38-125 25-113 (114)
134 KOG1449 Predicted Rho GTPase-a 93.6 0.016 3.4E-07 65.7 -0.9 72 294-376 1-74 (670)
135 KOG1449 Predicted Rho GTPase-a 92.7 0.037 8E-07 62.8 0.4 175 163-376 207-390 (670)
136 KOG1117 Rho- and Arf-GTPase ac 92.2 0.1 2.2E-06 61.6 3.1 95 16-125 84-178 (1186)
137 KOG1737 Oxysterol-binding prot 91.2 0.13 2.9E-06 61.3 2.8 90 20-123 78-167 (799)
138 cd01227 PH_Dbs Dbs (DBL's big 90.4 2.8 6.2E-05 39.8 10.4 87 38-125 30-116 (133)
139 cd01226 PH_exo84 Exocyst compl 90.2 2.2 4.9E-05 38.6 9.0 79 38-124 20-98 (100)
140 cd01231 PH_Lnk LNK-family Plec 89.7 1.8 4E-05 39.0 7.9 82 34-122 18-106 (107)
141 KOG3549 Syntrophins (type gamm 89.6 0.61 1.3E-05 50.3 5.8 105 14-124 276-386 (505)
142 PF15405 PH_5: Pleckstrin homo 88.7 1.1 2.4E-05 42.6 6.4 35 89-123 100-134 (135)
143 cd01223 PH_Vav Vav pleckstrin 88.6 2.8 6.1E-05 38.9 8.6 87 37-126 20-113 (116)
144 KOG1738 Membrane-associated gu 87.1 0.09 2E-06 60.5 -2.5 56 19-78 562-618 (638)
145 PF07820 TraC: TraC-like prote 87.0 1.1 2.3E-05 39.8 4.5 49 623-679 4-59 (92)
146 cd01225 PH_Cool_Pix Cool (clon 86.4 4.4 9.6E-05 37.3 8.4 82 37-124 28-109 (111)
147 KOG2391 Vacuolar sorting prote 86.4 12 0.00026 40.8 12.8 64 586-649 211-282 (365)
148 PF15411 PH_10: Pleckstrin hom 84.1 13 0.00028 34.5 10.6 86 35-120 19-116 (116)
149 KOG4047 Docking protein 1 (p62 83.9 0.53 1.2E-05 52.7 1.7 103 17-124 6-117 (429)
150 KOG3551 Syntrophins (type beta 82.0 0.87 1.9E-05 49.8 2.3 107 17-127 290-404 (506)
151 KOG0517 Beta-spectrin [Cytoske 80.4 0.034 7.3E-07 69.8 -10.0 105 15-125 2295-2410(2473)
152 KOG0248 Cytoplasmic protein Ma 76.8 1.1 2.4E-05 52.2 1.1 90 19-124 259-348 (936)
153 PRK13848 conjugal transfer pro 76.7 4.9 0.00011 35.6 4.8 46 626-679 8-60 (98)
154 cd01248 PH_PLC Phospholipase C 75.1 22 0.00049 32.4 9.2 35 88-122 79-114 (115)
155 KOG0804 Cytoplasmic Zn-finger 74.7 9.6 0.00021 42.8 7.6 73 585-658 347-419 (493)
156 KOG4807 F-actin binding protei 73.3 0.053 1.1E-06 58.8 -9.8 82 34-124 32-114 (593)
157 KOG4236 Serine/threonine prote 73.0 2.9 6.3E-05 48.0 3.2 94 15-124 409-523 (888)
158 PF10186 Atg14: UV radiation r 71.5 23 0.0005 37.3 9.6 47 581-627 62-108 (302)
159 KOG3520 Predicted guanine nucl 70.5 6.2 0.00013 49.1 5.4 47 84-130 681-727 (1167)
160 KOG3727 Mitogen inducible gene 69.8 0.68 1.5E-05 52.8 -2.6 83 34-124 372-458 (664)
161 PF09726 Macoilin: Transmembra 69.5 2.7E+02 0.0058 33.9 24.2 47 603-649 467-523 (697)
162 cd01255 PH_TIAM TIAM Pleckstri 67.2 40 0.00087 32.5 8.9 104 19-125 28-155 (160)
163 KOG1264 Phospholipase C [Lipid 61.3 7.1 0.00015 46.7 3.3 55 73-127 856-913 (1267)
164 PF06698 DUF1192: Protein of u 60.6 23 0.00049 29.1 5.2 32 618-649 25-56 (59)
165 PRK10884 SH3 domain-containing 59.4 42 0.00092 34.3 8.2 62 584-649 95-160 (206)
166 PF00038 Filament: Intermediat 56.4 76 0.0017 33.9 10.1 63 581-643 74-139 (312)
167 KOG0705 GTPase-activating prot 56.0 8.9 0.00019 44.3 2.9 35 89-125 446-480 (749)
168 PF08826 DMPK_coil: DMPK coile 54.1 56 0.0012 27.0 6.5 29 611-639 29-57 (61)
169 KOG0577 Serine/threonine prote 52.1 57 0.0012 38.6 8.4 58 242-314 218-275 (948)
170 KOG4424 Predicted Rho/Rac guan 50.6 21 0.00045 41.5 4.7 84 34-125 510-596 (623)
171 PRK13729 conjugal transfer pil 49.9 61 0.0013 37.2 8.2 59 572-637 56-120 (475)
172 PF08549 SWI-SNF_Ssr4: Fungal 49.6 52 0.0011 39.1 7.8 88 585-679 355-457 (669)
173 COG1579 Zn-ribbon protein, pos 48.5 91 0.002 32.7 8.7 70 582-651 10-82 (239)
174 PF09726 Macoilin: Transmembra 47.5 65 0.0014 39.0 8.5 73 579-651 422-511 (697)
175 PF06005 DUF904: Protein of un 44.2 1.1E+02 0.0023 26.1 7.0 55 593-647 8-66 (72)
176 PF05565 Sipho_Gp157: Siphovir 44.1 1.2E+02 0.0027 29.6 8.5 63 578-640 22-87 (162)
177 KOG3523 Putative guanine nucle 44.1 35 0.00076 39.9 5.2 81 35-121 497-591 (695)
178 KOG2129 Uncharacterized conser 44.1 1E+02 0.0022 34.7 8.4 69 584-652 210-316 (552)
179 KOG2077 JNK/SAPK-associated pr 41.5 69 0.0015 37.3 6.9 52 586-637 319-373 (832)
180 COG1579 Zn-ribbon protein, pos 41.0 1.3E+02 0.0028 31.6 8.5 35 605-639 87-121 (239)
181 PRK11637 AmiB activator; Provi 40.5 2.1E+02 0.0046 32.3 10.9 32 608-639 220-251 (428)
182 PF00038 Filament: Intermediat 40.0 1.3E+02 0.0028 32.2 8.7 67 584-650 49-125 (312)
183 TIGR03752 conj_TIGR03752 integ 39.8 1.3E+02 0.0029 34.5 8.9 56 593-648 70-136 (472)
184 PF10506 MCC-bdg_PDZ: PDZ doma 39.1 1E+02 0.0022 26.0 5.9 27 593-619 2-28 (67)
185 KOG3915 Transcription regulato 39.0 1.3E+02 0.0028 34.4 8.3 22 588-610 502-523 (641)
186 KOG3433 Protein involved in me 38.9 1.2E+02 0.0026 30.4 7.4 63 583-648 75-140 (203)
187 TIGR02231 conserved hypothetic 37.6 91 0.002 36.2 7.6 35 613-647 137-171 (525)
188 PF08438 MMR_HSR1_C: GTPase of 37.4 19 0.00041 33.2 1.5 53 627-679 11-78 (109)
189 PF03962 Mnd1: Mnd1 family; I 37.3 1.1E+02 0.0023 30.9 7.0 53 581-638 75-127 (188)
190 KOG4270 GTPase-activator prote 37.1 26 0.00057 41.1 2.9 154 157-324 31-195 (577)
191 PRK11637 AmiB activator; Provi 36.9 1.7E+02 0.0038 33.0 9.5 7 655-661 304-310 (428)
192 PF12325 TMF_TATA_bd: TATA ele 36.7 1.1E+02 0.0025 28.6 6.6 48 583-638 38-85 (120)
193 PF09304 Cortex-I_coil: Cortex 35.7 2.5E+02 0.0053 25.9 8.2 15 585-599 5-19 (107)
194 COG5509 Uncharacterized small 35.4 72 0.0016 26.2 4.2 31 619-649 30-60 (65)
195 KOG4140 Nuclear protein Ataxin 35.3 2.6E+02 0.0057 32.2 10.0 40 599-647 274-314 (659)
196 PF14197 Cep57_CLD_2: Centroso 34.5 2.1E+02 0.0045 24.2 7.2 54 585-638 1-64 (69)
197 PF06705 SF-assemblin: SF-asse 33.9 2.5E+02 0.0054 29.3 9.4 46 606-651 106-151 (247)
198 COG4942 Membrane-bound metallo 33.7 2.1E+02 0.0046 32.4 9.2 54 594-647 201-257 (420)
199 cd00089 HR1 Protein kinase C-r 33.7 52 0.0011 27.6 3.5 32 622-653 3-34 (72)
200 PF15277 Sec3-PIP2_bind: Exocy 33.2 3.4E+02 0.0075 24.0 9.2 79 37-124 3-88 (91)
201 PF11083 Streptin-Immun: Lanti 33.1 1.8E+02 0.004 26.3 6.9 61 584-644 1-75 (99)
202 PF08458 PH_2: Plant pleckstri 32.9 3.1E+02 0.0067 25.4 8.5 38 87-127 69-106 (110)
203 PF06637 PV-1: PV-1 protein (P 32.1 4.7E+02 0.01 29.3 11.1 97 580-679 302-425 (442)
204 PF04714 BCL_N: BCL7, N-termin 31.8 27 0.00058 27.7 1.3 21 34-54 27-47 (52)
205 PF12709 Kinetocho_Slk19: Cent 31.7 1.1E+02 0.0024 27.1 5.2 33 610-642 45-77 (87)
206 cd04769 HTH_MerR2 Helix-Turn-H 31.6 1.1E+02 0.0025 27.9 5.7 42 610-651 75-116 (116)
207 KOG4095 Uncharacterized conser 31.5 16 0.00034 35.3 -0.0 25 34-58 28-52 (165)
208 PF11180 DUF2968: Protein of u 31.3 2.5E+02 0.0054 28.5 8.3 37 579-615 102-138 (192)
209 PF11559 ADIP: Afadin- and alp 30.6 1.7E+02 0.0037 28.0 7.0 17 584-600 68-84 (151)
210 PF03938 OmpH: Outer membrane 30.5 1.9E+02 0.0041 27.6 7.3 32 612-643 78-109 (158)
211 PF02050 FliJ: Flagellar FliJ 30.0 3.5E+02 0.0076 23.6 8.6 70 580-649 17-94 (123)
212 PF12240 Angiomotin_C: Angiomo 29.9 76 0.0017 32.4 4.5 31 606-636 13-43 (205)
213 COG3750 Uncharacterized protei 29.7 98 0.0021 26.8 4.4 40 583-622 22-68 (85)
214 PRK10361 DNA recombination pro 29.4 2E+02 0.0044 33.2 8.3 51 587-637 65-115 (475)
215 PF12210 Hrs_helical: Hepatocy 28.8 1.7E+02 0.0037 26.4 5.9 39 607-649 43-81 (96)
216 PF03245 Phage_lysis: Bacterio 28.1 4.5E+02 0.0098 24.6 9.1 75 608-683 12-102 (125)
217 PRK09343 prefoldin subunit bet 28.1 1.6E+02 0.0035 27.4 6.1 41 610-650 74-115 (121)
218 TIGR01000 bacteriocin_acc bact 28.0 2.5E+02 0.0053 32.0 8.8 44 609-652 160-203 (457)
219 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.8 2.8E+02 0.0062 26.0 7.8 28 608-635 85-112 (132)
220 KOG4673 Transcription factor T 27.8 1.9E+02 0.0041 34.7 7.6 54 593-647 541-596 (961)
221 TIGR03752 conj_TIGR03752 integ 27.7 1.8E+02 0.0039 33.5 7.4 56 583-638 64-133 (472)
222 KOG0993 Rab5 GTPase effector R 27.4 74 0.0016 35.6 4.2 41 614-654 420-467 (542)
223 KOG3647 Predicted coiled-coil 27.2 2.4E+02 0.0053 30.0 7.7 38 586-627 120-157 (338)
224 PF11285 DUF3086: Protein of u 26.7 75 0.0016 33.5 3.9 24 617-640 7-33 (283)
225 PF07352 Phage_Mu_Gam: Bacteri 26.7 3.3E+02 0.0071 26.1 8.2 82 605-688 23-108 (149)
226 PF10186 Atg14: UV radiation r 26.0 3.8E+02 0.0083 28.0 9.4 39 582-620 70-108 (302)
227 PRK00409 recombination and DNA 25.5 2.2E+02 0.0047 35.1 8.2 46 579-624 517-565 (782)
228 KOG4466 Component of histone d 25.4 1.1E+02 0.0025 32.5 5.0 36 589-627 101-136 (291)
229 PF15463 ECM11: Extracellular 25.2 2.2E+02 0.0047 27.2 6.6 63 567-636 67-134 (139)
230 PF07888 CALCOCO1: Calcium bin 25.1 1E+02 0.0022 36.1 5.0 94 579-672 217-327 (546)
231 TIGR02338 gimC_beta prefoldin, 25.0 1.9E+02 0.0041 26.3 5.9 39 609-647 69-108 (110)
232 PF10234 Cluap1: Clusterin-ass 24.7 2.8E+02 0.0062 29.6 7.9 40 582-621 169-208 (267)
233 PF08597 eIF3_subunit: Transla 24.5 47 0.001 34.7 2.1 54 633-686 99-157 (245)
234 PF10168 Nup88: Nuclear pore c 24.3 2.7E+02 0.0058 34.0 8.5 17 583-599 552-568 (717)
235 PF10828 DUF2570: Protein of u 24.3 3.5E+02 0.0077 24.6 7.5 37 584-620 27-63 (110)
236 cd07666 BAR_SNX7 The Bin/Amphi 24.3 2.6E+02 0.0056 29.4 7.4 41 587-635 148-191 (243)
237 PF04282 DUF438: Family of unk 24.1 2.8E+02 0.0061 23.6 6.2 57 237-293 1-57 (71)
238 PF12711 Kinesin-relat_1: Kine 23.4 2.9E+02 0.0062 24.5 6.3 40 597-637 45-86 (86)
239 KOG1060 Vesicle coat complex A 23.4 1.5E+03 0.032 28.1 17.5 135 163-301 320-479 (968)
240 PRK10947 global DNA-binding tr 23.3 1.7E+02 0.0037 28.0 5.4 49 581-629 20-68 (135)
241 PRK11091 aerobic respiration c 23.3 3.8E+02 0.0082 32.4 9.8 47 605-651 112-161 (779)
242 cd00584 Prefoldin_alpha Prefol 23.0 1.3E+02 0.0028 27.9 4.6 30 610-639 90-119 (129)
243 KOG1170 Diacylglycerol kinase 22.9 3.9 8.4E-05 48.8 -6.8 89 20-125 3-95 (1099)
244 PF13747 DUF4164: Domain of un 22.6 4.3E+02 0.0094 23.3 7.4 56 580-636 6-61 (89)
245 KOG0592 3-phosphoinositide-dep 22.2 77 0.0017 37.0 3.3 71 38-124 466-537 (604)
246 PTZ00464 SNF-7-like protein; P 22.1 8.7E+02 0.019 25.0 10.7 21 579-599 15-35 (211)
247 TIGR00293 prefoldin, archaeal 21.9 1.4E+02 0.0031 27.5 4.6 30 610-639 89-118 (126)
248 PRK11239 hypothetical protein; 21.8 1.1E+02 0.0023 31.5 3.9 24 616-639 185-208 (215)
249 PF05508 Ran-binding: RanGTP-b 21.8 4.1E+02 0.009 28.9 8.4 50 585-635 45-105 (302)
250 TIGR01069 mutS2 MutS2 family p 21.6 3.5E+02 0.0077 33.2 9.0 65 581-645 514-581 (771)
251 PF05700 BCAS2: Breast carcino 21.6 5.6E+02 0.012 26.3 9.2 31 611-641 179-209 (221)
252 KOG0241 Kinesin-like protein [ 21.5 2E+02 0.0042 35.9 6.4 18 546-564 519-536 (1714)
253 PF02841 GBP_C: Guanylate-bind 21.4 3.1E+02 0.0066 29.4 7.6 27 608-634 230-256 (297)
254 KOG3915 Transcription regulato 20.9 2.7E+02 0.0058 31.9 6.9 22 623-644 550-572 (641)
255 PF03471 CorC_HlyC: Transporte 20.8 94 0.002 26.4 2.8 45 198-247 4-48 (81)
256 PRK00409 recombination and DNA 20.7 3.3E+02 0.0071 33.6 8.5 61 580-640 514-574 (782)
257 PF08781 DP: Transcription fac 20.7 2.2E+02 0.0049 27.5 5.6 24 583-609 2-25 (142)
258 PRK03947 prefoldin subunit alp 20.6 1.5E+02 0.0033 27.9 4.6 29 611-639 98-126 (140)
259 cd04776 HTH_GnyR Helix-Turn-He 20.5 4.3E+02 0.0093 24.3 7.4 41 609-649 75-115 (118)
260 PF05615 THOC7: Tho complex su 20.3 6.4E+02 0.014 23.6 8.8 66 577-645 41-112 (139)
261 COG5374 Uncharacterized conser 20.2 2.5E+02 0.0055 28.2 5.9 52 584-643 138-189 (192)
262 PRK09039 hypothetical protein; 20.0 4.8E+02 0.01 28.8 8.9 18 662-679 233-250 (343)
No 1
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-50 Score=452.68 Aligned_cols=565 Identities=31% Similarity=0.355 Sum_probs=470.5
Q ss_pred CCCCcEEEEEecChHHHHHHHHHHHHHHhhCCcc-hhccCccccccCCCCccccCc-cccccCCCCCCCcccccchHHHh
Q 005588 97 GRDGRAFTLKAETSEDLYEWKTALELALAQAPSA-ALVMGHNGIFRNDTNDTIEGS-FHQWRDKRPVKSLVVGRPILLAL 174 (689)
Q Consensus 97 ~~~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~~-~~~~g~~~~f~~~~~~~~~~~-~~~~k~~~~~~~~vFG~pL~~ll 174 (689)
..+.+.+...+++.++..+|-.++..+..+||.. +.+++|.|+|+.++..+..+. +..+++..++.+.+||+|..-.+
T Consensus 286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l 365 (1100)
T KOG4271|consen 286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL 365 (1100)
T ss_pred hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence 3457788899999999999999999999999999 899999999999988877664 77788889999999999999999
Q ss_pred hhCCCCcHHHHHHHHHHHhcCCCcCC---eeecCC-CHHHHHHHHHHhh-cCCccC--CCCCCcc--cchhhHH--HHhh
Q 005588 175 EDIDGGPSFLEKALRFLEKFGTKVEG---ILRQAA-DVEEVDRRVQEYE-QGKTEF--SADEDAH--VIGDCVK--HVLR 243 (689)
Q Consensus 175 ~~~~~VP~iL~~~i~~Le~~Gl~~EG---IFR~sG-~~~~v~~L~~~ld-~g~~~~--~~~~Dvh--~VAslLK--~fLR 243 (689)
+..++-|.+..+.+.+|..+|+..|| |-|+++ ++..|+.-...|+ .|...+ ....+|| .|...++ .-||
T Consensus 366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr 445 (1100)
T KOG4271|consen 366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR 445 (1100)
T ss_pred hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence 99999999999999999999999999 999999 7888887777775 565433 3345898 6888888 8899
Q ss_pred hCCCCCCChhhHHHHHHH--HhcCCHHHHHHHHHHHHhcc--CChhHHH----HHHHHHHHHHHhhcccCCCCCCcc-ch
Q 005588 244 ELPSSPVPASCCTALLEA--YKIDRKEARISAMRSAILET--FPEPNRR----LLQRILRMMHTISSHAHENRMTPS-AV 314 (689)
Q Consensus 244 eLPePLlp~~ly~~~i~~--~~~~~~e~ri~~l~~lIl~~--LP~~N~~----lL~~Ll~~L~~Va~~s~~NkMta~-NL 314 (689)
.++..+.|..+|..+..+ +...-.+.++..++..|++. .|.+|+. ++.+|+.+++.+..++..|.|++. ..
T Consensus 446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s 525 (1100)
T KOG4271|consen 446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS 525 (1100)
T ss_pred hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence 999999999999887777 55555678999999999888 8999888 899999999999999999999999 99
Q ss_pred hhhhcc-cccC-CCCCCCCccccc-cCCCCCchHH----HHHHHHHHH-HHHHHHHHHHHhccccCCCCCcccccCCCCC
Q 005588 315 AACMAP-LLLR-PLLAGECELEDD-FDMNGDNSAQ----LLAAANAAN-NAQAIIATLLEEYENIFDDESLHRCSISADS 386 (689)
Q Consensus 315 AivfaP-~Llr-~~~~~~~~le~~-~~~~g~~~~~----l~~~~~~~~-~~~~iVe~LIen~~~IF~~~~~~~~~~s~~~ 386 (689)
+.|.+| .|++ |-..+.|.++.. |+..|+...+ ++.+...++ .++.+|-.+++.|..||.+..+..+..+..+
T Consensus 526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s 605 (1100)
T KOG4271|consen 526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS 605 (1100)
T ss_pred HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence 999999 5777 666889999887 9999999998 888887777 5999999999999999999988777776665
Q ss_pred CCCCCCC--CCCCccccccccCCCCCCCCCCCCCCCCCCcccccCCCCcccCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 005588 387 HVDNSGS--EDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNA 464 (689)
Q Consensus 387 ~~~~s~~--e~ssd~~~~~~~d~s~~s~e~e~~~~~d~~~e~~~~~~~se~s~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 464 (689)
.+..+.. .++.+.+.+...-..-.+..++++-....++.........|.+..+.+|.+.|.+++.+|++.+++++-.+
T Consensus 606 ~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~s~~~dn~~~a~~~tee~~~~Sp~~s~~~~~~~~~d~d~ds~p~~Sp 685 (1100)
T KOG4271|consen 606 EIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEGSHMSDNAAEACSTTEEVFNFSPRDSSPYCNSNLQDSDEDSPPSYSP 685 (1100)
T ss_pred ccccccccCCCchhccccccccccccchhhccccccCCccccccccCchhhcCCChhhcccccCCCccccCCCCCCCcCC
Confidence 5553332 44444444444444444444444444444444446677788888899999999999999999999998888
Q ss_pred ccccCCCCCCCCCCCCCCChhHHhhhhcccCCCCccccccccccCCCCccccccccccccCCCCCCCC-CCCCCcccCcC
Q 005588 465 SAESSKLPIDPIQIGDPGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLS-VSGLESSAEKP 543 (689)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 543 (689)
..+.++++..+...|.+.+.+ .+...++....+.+++..+|+....|+.|.+ ++.....+.|+
T Consensus 686 ~~e~t~lsst~k~~S~~~~d~----------------g~~~~~i~~~~~n~~~~r~i~~Vs~pi~Pk~vs~dvt~~a~kp 749 (1100)
T KOG4271|consen 686 FREDTSLSSTSKDHSKLSMDL----------------GGNDVGISFTMNNFESKRNINKVSPPIKPKAVSPDVTFDATKP 749 (1100)
T ss_pred ccCcccccCCccccccccccc----------------cCCCCCcccccchhHhhhhcccCCCCCCCCcCCCCcccccccC
Confidence 888888877765444332211 1223345556677788888888888887776 56677788888
Q ss_pred CC-CCCCCCCCCCcccccccCcccCCCCcccCCCChhHHHHHhH-----hhhhhHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 005588 544 VG-KGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQR-----LEITKNDLRHRIAKEARGNAILQASLERRKQ 617 (689)
Q Consensus 544 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (689)
.. -+.++...++|...|||+.+.|++.+|++|.+++|++.||| ++.+|.|+|+||+||+|+|+.||||+||||+
T Consensus 750 ~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k~~~~~QaSder~nk 829 (1100)
T KOG4271|consen 750 DLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYASPEDAVVKPRNEEENIYSVKDDSQQRIIKEIKNNNKLQASDERRNK 829 (1100)
T ss_pred cccccccccccCccccccCCCCCcccCCchhcccCcchhhhcccccccceeecchhhhhHHHHHhhcchhhhhhhhhccc
Confidence 44 44466677888899999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh--ccCCCcccCCCccCCccccchhHHHHHH
Q 005588 618 ALHERRLALE-QDVSRLQEQLQAERDLRAALEVG--LSMSSGQFSSSRGMDSKVCTDHKRFVSF 678 (689)
Q Consensus 618 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g--l~~~~~~~~~~~~~d~~~~~~lee~~~~ 678 (689)
++|+||++|| +++.|||+++|++|+.|.|...| |..+.|+.. ...-|+||+|+||++.+.
T Consensus 830 s~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~d-~~~~~sktskkl~k~k~a 892 (1100)
T KOG4271|consen 830 SDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGSD-LSAGPSKTSKKLEKNKLA 892 (1100)
T ss_pred ccccccccccHhhhhhhhhccccchhHHHHHHhccCccccccccc-cccCcccchHHHhhhccc
Confidence 9999999999 89999999999999999999999 888999874 678899999999998753
No 2
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=6.7e-41 Score=334.91 Aligned_cols=189 Identities=20% Similarity=0.376 Sum_probs=168.8
Q ss_pred cccchHHHhhhCC-CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcC-C-ccCC--CCCCcccchhhHHH
Q 005588 166 VGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDCVKH 240 (689)
Q Consensus 166 FG~pL~~ll~~~~-~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~-~~~~--~~~Dvh~VAslLK~ 240 (689)
||+||..++++.+ .||.+|.+|+.||+++|+.+|||||++|+..+|+++++.|+++ . .++. ...|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 9999999999854 6999999999999999999999999999999999999999974 3 3332 23589999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcc
Q 005588 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (689)
Q Consensus 241 fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP 320 (689)
|||+||+||||.++|+.|+++.+..+..+++..++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||||
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P 159 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEAL-MLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence 99999999999999999999999888899999999976 59999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005588 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (689)
Q Consensus 321 ~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF 372 (689)
+|+|++... ..+.+......+.+|++||+||+.||
T Consensus 160 ~Ll~~~~~~-----------------~~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 160 TLMRPPEDS-----------------ALTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred ccCCCCCcc-----------------HHHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 999987311 02233445667899999999999998
No 3
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.3e-41 Score=334.59 Aligned_cols=192 Identities=23% Similarity=0.423 Sum_probs=176.0
Q ss_pred ccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhHHHHhhh
Q 005588 165 VVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRE 244 (689)
Q Consensus 165 vFG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslLK~fLRe 244 (689)
+||+||..+++ ++.||.+|.+|+.||+++|+.+|||||++|+..+++++++.+++|.......+|+|+||++||.|||+
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre 79 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN 79 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence 69999999999 67899999999999999999999999999999999999999999986656789999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccC
Q 005588 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (689)
Q Consensus 245 LPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr 324 (689)
||+||+|.+.|+.|+.++...+.+.++..++.++ .+||+.|+.+|+||+.||++|+.+++.|+||++|||+||||+|||
T Consensus 80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~ 158 (192)
T cd04402 80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQRLL-DKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW 158 (192)
T ss_pred CCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence 9999999999999999998888899999999976 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
++..+ ...+.....+..+|++||+||+.||+++.
T Consensus 159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~~ 192 (192)
T cd04402 159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGEDI 192 (192)
T ss_pred CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCCC
Confidence 87321 01234456688999999999999999863
No 4
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-40 Score=335.21 Aligned_cols=197 Identities=22% Similarity=0.348 Sum_probs=174.8
Q ss_pred CcccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccC---CCCCCcccchhhH
Q 005588 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCV 238 (689)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~Dvh~VAslL 238 (689)
+++||+||..++++ +..||.+|.+|+.||+++|+.+|||||++|+..+++.+++.++.|.... ....|+|+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 56999999999986 4579999999999999999999999999999999999999999996432 3457999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhh
Q 005588 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (689)
Q Consensus 239 K~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivf 318 (689)
|.|||+||+||||.++|+.|+.+.+..+..+++..++.+| .+||+.|+.+|+||+.||++|++|++.|+|+++|||+||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f 160 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRIL-NKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence 9999999999999999999999998888889999999976 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 005588 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (689)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~ 375 (689)
||+|+|++..+. . .+.+.....+.+.+|++||+||+.||+++
T Consensus 161 aP~ll~~~~~~~--------------~-~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 161 APNLLWAKNEGS--------------L-AEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred ccccCCCCCCCh--------------h-hhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 999999874211 0 11122334568899999999999999986
No 5
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=2.3e-40 Score=332.26 Aligned_cols=191 Identities=23% Similarity=0.421 Sum_probs=168.9
Q ss_pred cccccchHHHhhhC-----CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhh
Q 005588 164 LVVGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDC 237 (689)
Q Consensus 164 ~vFG~pL~~ll~~~-----~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAsl 237 (689)
.|||+||++++... ..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|. ..+....|+|+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 38999999998642 249999999999999999999999999999999999999999996 345567899999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhc--CCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchh
Q 005588 238 VKHVLRELPSSPVPASCCTALLEAYKI--DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (689)
Q Consensus 238 LK~fLReLPePLlp~~ly~~~i~~~~~--~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLA 315 (689)
||.|||+||+||+|.++|+.|+.+.+. .+...++..++.+| .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQV-SILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999988764 34567788999866 699999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005588 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (689)
Q Consensus 316 ivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF 372 (689)
+||||+|||+... + ..+.+..+..++.+|++||+||+.||
T Consensus 160 ivf~P~llr~~~~------~-----------~~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKVE------D-----------PATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCCC------C-----------HHHHHhccHHHHHHHHHHHHhhhhcC
Confidence 9999999998732 1 12334556678899999999999998
No 6
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.7e-40 Score=334.04 Aligned_cols=200 Identities=25% Similarity=0.326 Sum_probs=176.2
Q ss_pred ccccchHHHhhhC------CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC---ccCCCCCCcccch
Q 005588 165 VVGRPILLALEDI------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---TEFSADEDAHVIG 235 (689)
Q Consensus 165 vFG~pL~~ll~~~------~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~---~~~~~~~Dvh~VA 235 (689)
|||+||+.++.+. ..||.+|.+|+.||+++|+.+|||||++|+..+|+++++.++.+. .......|+|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 7999999999863 369999999999999999999999999999999999999999863 2234567999999
Q ss_pred hhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchh
Q 005588 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (689)
Q Consensus 236 slLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLA 315 (689)
++||.|||+||+||||.++|+.|+.+....+..+++.+++.++ .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLV-LLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 9999999999999999999999999988888888999999866 699999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 316 ivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
+||||+||++...+.. ........+..+..++.+|++||+|++.||..+.
T Consensus 160 ivfaP~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p~ 209 (216)
T cd04391 160 MIMAPNLFPPRGKHSK-----------DNESLQEEVNMAAGCANIMRLLIRYQDLLWTVPS 209 (216)
T ss_pred HHhccccCCCCCCCCC-----------cchhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCH
Confidence 9999999998743221 1123345566677789999999999999999865
No 7
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=5.6e-40 Score=326.09 Aligned_cols=185 Identities=24% Similarity=0.345 Sum_probs=167.8
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhh
Q 005588 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (689)
Q Consensus 166 FG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLRe 244 (689)
||+||+.++.+...||.+|.+|++||+++|+.+|||||++|+..+++++++.|+.|. .......|+|+||++||.|||+
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe 80 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE 80 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence 999999999888899999999999999999999999999999999999999999885 3334678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccC
Q 005588 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (689)
Q Consensus 245 LPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr 324 (689)
||+||||+++|+.|+.+....+..+++.+++.+| .+||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||
T Consensus 81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVL-EQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 9999999999999999998888888999999966 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
++... + .++.+....+.+.+|++||+.
T Consensus 160 ~~~~~-----d-----------~~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDSS-----D-----------PLTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCCC-----C-----------HHHHHHhhhhhHHHHHHHhhC
Confidence 86321 1 134566777889999999973
No 8
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.2e-40 Score=333.25 Aligned_cols=210 Identities=21% Similarity=0.353 Sum_probs=175.3
Q ss_pred CcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHH
Q 005588 163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKH 240 (689)
Q Consensus 163 ~~vFG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~ 240 (689)
++|||+||..++++. ..||.+|.+|+.||+.+|+.+|||||++|+..+++.|++.++.+. .......++|+||++||.
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~ 81 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ 81 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence 469999999898864 569999999999999999999999999999999999999999863 444567899999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcc
Q 005588 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (689)
Q Consensus 241 fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP 320 (689)
|||+||+||||+++|+.|+.+.+..+.++++.+++.++ .+||+.|+.+|++|+.||++|+.|++.||||+.|||+||||
T Consensus 82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAI-LLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 99999999999999999999988888889999999977 59999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccc---cc--CCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588 321 LLLRPLLAGECELED---DF--DMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 321 ~Llr~~~~~~~~le~---~~--~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
+||+........+.. .+ ...|... ...+.....+..+|.+||+||+.||.-+.
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e~~~~~~~v~~lI~~~~~lf~vp~ 218 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKKSLGKPD---QKELSENKAAHQCLAYMIEECNTLFMVPK 218 (220)
T ss_pred hhcCCCCCCcccccchhhhccccccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999986432111000 00 0111111 11234445577899999999999997543
No 9
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=5.9e-40 Score=324.95 Aligned_cols=176 Identities=21% Similarity=0.355 Sum_probs=165.2
Q ss_pred cccchHHHhhhC-----CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhHHH
Q 005588 166 VGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (689)
Q Consensus 166 FG~pL~~ll~~~-----~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslLK~ 240 (689)
||+||..++++. ..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|......++|+|+||++||.
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~ 80 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ 80 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence 999999999874 259999999999999999999999999999999999999999997666667899999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcc
Q 005588 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (689)
Q Consensus 241 fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP 320 (689)
|||+||+||||.++|+.|+++....+..+++..++.++ .+||+.|+.+|+||+.||++|+.|++.||||++|||+||||
T Consensus 81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLL-KELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999999998888899999999966 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005588 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (689)
Q Consensus 321 ~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~ 374 (689)
+|+++ +.+++.||+||+.||++
T Consensus 160 ~l~~~--------------------------------~~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQIS--------------------------------NRLLYALLTHCQELFGN 181 (182)
T ss_pred cccCc--------------------------------HHHHHHHHHHHHHHcCC
Confidence 99864 26799999999999986
No 10
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-38 Score=341.64 Aligned_cols=304 Identities=23% Similarity=0.340 Sum_probs=239.4
Q ss_pred CCCCceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCC--CCCCceeeeeeCcEEcCCCcceeeccCCcceE
Q 005588 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGIDLNNSGSVVVREDKKLLT 91 (689)
Q Consensus 14 ~~~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~--p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~F 91 (689)
..+...+++||||.+.|....++|.|+||+....+-.+-.-+-+.. .+.+...++.+..|.-....+ -+|+|||
T Consensus 260 k~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktdS----IdKRFCF 335 (812)
T KOG1451|consen 260 KRPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTDS----IDKRFCF 335 (812)
T ss_pred cCCCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcccc----cccceee
Confidence 3556679999999999988889999999999886433333322222 223344445555554444332 4789999
Q ss_pred EEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhCCcchhccCccccccCCCCccccCccccccCCCCCCCcccccchH
Q 005588 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPIL 171 (689)
Q Consensus 92 vI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~~~~~~g~~~~f~~~~~~~~~~~~~~~k~~~~~~~~vFG~pL~ 171 (689)
.+....++ -+.++||-+++++..||.|+..+ .+++....+-...+. ..|.
T Consensus 336 Dve~~erp-gviTmQALSE~drrlWmeAMDG~-------------ep~Y~s~~~~~~~~~----------------~qLd 385 (812)
T KOG1451|consen 336 DVEVEERP-GVITMQALSEKDRRLWMEAMDGA-------------EPSYTSGENCSTYKQ----------------TQLD 385 (812)
T ss_pred eeeecccC-CeeehHhhhhhHHHHHHHHhcCC-------------CccccCccccchhhh----------------hhhh
Confidence 99875554 47999999999999999998644 222222211000000 0111
Q ss_pred HHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhc----CCc--cCCCCCCcccchhhHHHHhhhC
Q 005588 172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQ----GKT--EFSADEDAHVIGDCVKHVLREL 245 (689)
Q Consensus 172 ~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~----g~~--~~~~~~Dvh~VAslLK~fLReL 245 (689)
++ -=.||.+||.+|+..|++++|+||..|...+|++|+..+-. ++. .....+|+-+|.+.||.|||.|
T Consensus 386 ~i------GF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnL 459 (812)
T KOG1451|consen 386 DI------GFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNL 459 (812)
T ss_pred hh------hHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhC
Confidence 11 13589999999999999999999999999999999886533 222 2335789999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCC
Q 005588 246 PSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (689)
Q Consensus 246 PePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~ 325 (689)
|+||+++.+...|+.+++..+.+.|+.+|+.++ ++||..||.+|..|++||.+|+.|+..|.||..||++||||+|+|+
T Consensus 460 pEPLMTY~LHk~FI~AAKsdnq~yRv~aIHsLV-HkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRp 538 (812)
T KOG1451|consen 460 PEPLMTYELHKVFINAAKSDNQTYRVDAIHSLV-HKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRP 538 (812)
T ss_pred CchhhHHHHHHHHHHHHhccchhhhHHHHHHHH-HhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCc
Confidence 999999999999999999999999999999977 6999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588 326 LLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 326 ~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
. ...+||++.++.++-||+.||+||+.||...+
T Consensus 539 Q------------------EETVAAiMdIKFQNIVVEILIEnyeKIF~t~P 571 (812)
T KOG1451|consen 539 Q------------------EETVAAIMDIKFQNIVVEILIENYEKIFKTKP 571 (812)
T ss_pred h------------------HHHHHHHHcchhhhhhHHHHHhhhHHHhcCCC
Confidence 7 23578888888888899999999999998765
No 11
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.7e-39 Score=324.88 Aligned_cols=190 Identities=22% Similarity=0.304 Sum_probs=165.7
Q ss_pred cccccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccCC----CCCCcccchhhH
Q 005588 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS----ADEDAHVIGDCV 238 (689)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~----~~~Dvh~VAslL 238 (689)
++||+||..++.+ +..||.+|.+|++||+++|+ +|||||++|+..+++++++.|++|..... ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 4899999999876 45799999999999999999 69999999999999999999999863222 346999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhh
Q 005588 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (689)
Q Consensus 239 K~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivf 318 (689)
|.|||+||+||||+++|+.|+++....+..+++..++.+| .+||+.|+.+|+||+.||++|+.|++.||||+.|||+||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVI-QQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 9999999999999999999999999888899999999977 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
||+|||++..... .+ +-.++.+.....+.||+|||+|
T Consensus 159 ~P~L~~~~~~~~~------~~------~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 159 APNLLRSKQIESA------CF------SGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhcCCCCccccc------cc------hHHHHHHHHhhhhhheehhhcC
Confidence 9999998732110 00 1123455566677899999986
No 12
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2e-39 Score=328.75 Aligned_cols=192 Identities=18% Similarity=0.323 Sum_probs=168.4
Q ss_pred cccchHHHhhhCC------------CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc--CCCCCCc
Q 005588 166 VGRPILLALEDID------------GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDA 231 (689)
Q Consensus 166 FG~pL~~ll~~~~------------~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~Dv 231 (689)
||+||..++++.+ .||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 9999999998843 3999999999999999999999999999999999999999998532 3456799
Q ss_pred ccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccC-----C
Q 005588 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----E 306 (689)
Q Consensus 232 h~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~-----~ 306 (689)
|+||++||.|||+||+||||.++|+.|+.+.+..+.++++..++.++ .+||+.|+.+|++|+.||++|+.++. .
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~-~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVY-CLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999999999888888999998865 69999999999999999999998765 5
Q ss_pred CCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588 307 NRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 307 NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
||||+.|||+||||+|||++.... ..+......+.+|++||+||+.||+.+.
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~------------------~~~~~~~~~~~vv~~LI~n~~~if~vp~ 211 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNP------------------NTGDEYFLAIEAVNYLIENNEEFCEVPD 211 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCc------------------chHHHHHHHHHHHHHHHHhHHHHhcCCC
Confidence 999999999999999999874221 0112233467899999999999998754
No 13
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=2.7e-39 Score=321.75 Aligned_cols=184 Identities=20% Similarity=0.379 Sum_probs=165.6
Q ss_pred cccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc---CCCCCCcccchhhHH
Q 005588 164 LVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVK 239 (689)
Q Consensus 164 ~vFG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~Dvh~VAslLK 239 (689)
++||+||+.++++. ..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|... .....|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 48999999999874 57999999999999999999999999999999999999999998643 234689999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhc
Q 005588 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (689)
Q Consensus 240 ~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfa 319 (689)
.|||+||+||||.++|+.|+++.+..+..+++..++.+| .+||+.|+.+|+||+.||++|++|++.||||++|||+|||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREIL-STLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence 999999999999999999999999988899999999977 6999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 320 P~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
|+|+|.+... +.+....+++++++.||.|
T Consensus 160 P~L~~~p~~~-------------------~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 160 PTLMPVPEGQ-------------------DQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ccccCCCCCc-------------------cHHHHHHHHHHHHHHHhcC
Confidence 9999976321 1234456788899999875
No 14
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.5e-39 Score=320.71 Aligned_cols=183 Identities=27% Similarity=0.401 Sum_probs=163.4
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc-C--CCCCCcccchhhHHHH
Q 005588 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-F--SADEDAHVIGDCVKHV 241 (689)
Q Consensus 166 FG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~--~~~~Dvh~VAslLK~f 241 (689)
||+||..++++. ..||.+|.+|+.||+++|+.+|||||++|+...+++++..++.|... + ....|+|+||++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 999999999874 46999999999999999999999999999999999999999998632 2 3457999999999999
Q ss_pred hhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhccc
Q 005588 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (689)
Q Consensus 242 LReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~ 321 (689)
||+||+||||+++|+.|+++.+..+..+++..++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||||+
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ 159 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLI-KSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence 9999999999999999999999988899999999976 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 322 LLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 322 Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
|||++... ...+....+++.+|++||+|
T Consensus 160 ll~~~~~~------------------~~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 160 LLRPEQET------------------GNIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccCCCCcc------------------hHHHHHhHHHHHHHHHHhhC
Confidence 99987321 01122344678999999985
No 15
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.1e-39 Score=321.50 Aligned_cols=190 Identities=26% Similarity=0.445 Sum_probs=169.1
Q ss_pred CCcccccchHHHhhhC---CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc-cCCCCCCcccchhh
Q 005588 162 KSLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDC 237 (689)
Q Consensus 162 ~~~vFG~pL~~ll~~~---~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~Dvh~VAsl 237 (689)
++.+||+||+.++++. ..||.+|.+|+.||+++|+++|||||++|+..+++++++.+++|.. .+....|+|+||++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 5789999999999864 5699999999999999999999999999999999999999999963 34333499999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhh
Q 005588 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (689)
Q Consensus 238 LK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAiv 317 (689)
||.|||+||+||+|.+.|+.|+.+.+.. ...++..++.++ .+||+.|+.+|.+|+.||++|+.|++.|+|++.|||+|
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~-~~~~~~~~~~~i-~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQLL-QTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 9999999999999999999999987654 678899999977 58999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005588 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (689)
Q Consensus 318 faP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF 372 (689)
|||+|+|++... . .+...+.++.+|++||+||+.||
T Consensus 160 faP~l~~~~~~~-~------------------~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAKDAS-M------------------SLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCCCcc-c------------------CHHHHHHHHHHHHHHHHhHHhhC
Confidence 999999987321 0 13345667889999999999998
No 16
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.1e-39 Score=321.27 Aligned_cols=190 Identities=21% Similarity=0.361 Sum_probs=169.1
Q ss_pred ccccchHHHhhhC--CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccC----CCCCCcccchhhH
Q 005588 165 VVGRPILLALEDI--DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF----SADEDAHVIGDCV 238 (689)
Q Consensus 165 vFG~pL~~ll~~~--~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~----~~~~Dvh~VAslL 238 (689)
.||+||+..+... ..||.+|.+|+.+|+++|+.+|||||++|+..+++++++.+++|.... ....|+|+||++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 5999999877653 569999999999999999999999999999999999999999996432 2346999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhh
Q 005588 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (689)
Q Consensus 239 K~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivf 318 (689)
|.|||+||+||||.+.|+.|+.+.+..+..+++..++.++ .+||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLI-HSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 9999999999999999999999988888899999999976 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005588 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (689)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF 372 (689)
||+|+|++..+ ...........+.+|+.||+||+.||
T Consensus 160 aP~l~r~~~~~-----------------~~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDDN-----------------METMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCCC-----------------HHHHHHhHHHHHHHHHHHHHhCcccC
Confidence 99999987321 01223345567899999999999998
No 17
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=5.2e-39 Score=319.12 Aligned_cols=183 Identities=21% Similarity=0.329 Sum_probs=164.9
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhh
Q 005588 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (689)
Q Consensus 166 FG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLRe 244 (689)
||+||+.++..++.||.+|.+|+.||+.+|+.+|||||++|+..+|+++++.|+.|. ......+|+|+||++||.|||+
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe 80 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD 80 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence 999999999877889999999999999999999999999999999999999999875 3445678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccC
Q 005588 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (689)
Q Consensus 245 LPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr 324 (689)
||+||||.++|+.|+.+....+..+++..++.+| ..||+.|+.+|++|+.||++|+.|++.|+||++|||+||||+|||
T Consensus 81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYSVI-DQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 9999999999999999998888888999999866 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 005588 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLL 365 (689)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LI 365 (689)
++... + .++.++...+...+|++||
T Consensus 160 ~p~~~-----d-----------~~~~~~~~~~~~~~~~~~~ 184 (186)
T cd04406 160 CPDTT-----D-----------PLQSVQDISKTTTCVELIV 184 (186)
T ss_pred CCCCC-----C-----------HHHHHHHHhhccchhhhhc
Confidence 87321 1 1334556667788899887
No 18
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.7e-39 Score=321.43 Aligned_cols=186 Identities=20% Similarity=0.342 Sum_probs=163.8
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc-cCCCCCCcccchhhHHHHhh
Q 005588 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (689)
Q Consensus 166 FG~pL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~Dvh~VAslLK~fLR 243 (689)
||+||..++++ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|.. ......|||+||++||.|||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR 80 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK 80 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence 99999999987 56799999999999999999999999999999999999999999863 33457899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC------------CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCc
Q 005588 244 ELPSSPVPASCCTALLEAYKID------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (689)
Q Consensus 244 eLPePLlp~~ly~~~i~~~~~~------------~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta 311 (689)
+||+||||+++|+.|+++.+.. ...+++.+++.+| ..||+.|+.+|+||+.||++|+.|++.|+|++
T Consensus 81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELL-GRLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999876531 2457899999977 69999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 312 ~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
.|||+||||+|||++.... ..++++....+.+.+|++||.|
T Consensus 160 ~NLAivf~P~Ll~~~~~~~---------------~~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGGD---------------VSMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCCc---------------hHHHHHhccchHHHHHHHHhhC
Confidence 9999999999999984321 1234455667788999999986
No 19
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2e-38 Score=318.87 Aligned_cols=195 Identities=24% Similarity=0.328 Sum_probs=168.1
Q ss_pred ccccchHHHhhh----CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhHHH
Q 005588 165 VVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (689)
Q Consensus 165 vFG~pL~~ll~~----~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslLK~ 240 (689)
|||+||..++.. .+.||.+|.+|+.||++ |+.+|||||++|+..+++++++.|++|.... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence 799999988754 46799999999999986 6999999999999999999999999986443 35789999999999
Q ss_pred HhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcc
Q 005588 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (689)
Q Consensus 241 fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP 320 (689)
|||+||+||||.++|+.|+.+....+.++++.+++.++ .+||+.|+.+|+||+.||++|++|++.||||+.|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLT-CLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 99999999999999999999988888888888888755 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 321 ~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
+|||+..... .|. .. +......++.+|++||+||+.||--++
T Consensus 158 ~L~~~~~~~~-------~~s----~~---~~~~~~~~~~vv~~lI~~~~~i~~vp~ 199 (202)
T cd04394 158 NLFQSEEGGE-------KMS----SS---TEKRLRLQAAVVQTLIDNASNIGIVPD 199 (202)
T ss_pred eeecCCCccc-------ccc----hh---HHHhHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999863211 111 00 112234567999999999999997654
No 20
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.2e-38 Score=323.53 Aligned_cols=188 Identities=21% Similarity=0.279 Sum_probs=161.7
Q ss_pred ccccchHHHhhhC----------------CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC----cc
Q 005588 165 VVGRPILLALEDI----------------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TE 224 (689)
Q Consensus 165 vFG~pL~~ll~~~----------------~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~----~~ 224 (689)
||||||++.++.. +.||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.+. ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 7999999888642 358999999999999999999999999999999999999999863 22
Q ss_pred CCCCCCcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhc-----------------CCHHHHHHHHHHHHhccCChhHH
Q 005588 225 FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKI-----------------DRKEARISAMRSAILETFPEPNR 287 (689)
Q Consensus 225 ~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~-----------------~~~e~ri~~l~~lIl~~LP~~N~ 287 (689)
....+++|+||++||.|||+||+||||.++|+.|+.+... .+..+++..++.++ .+||+.|+
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~ 159 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLI-TRLPNLNR 159 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHH-HHCCHHHH
Confidence 3366899999999999999999999999999999987643 35678899999976 69999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 288 RLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 288 ~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
.+|+||+.||++|++|++.||||++|||+||||+||+++... |. .......+.+|++||+|
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~---------~~----------~~~~~~~~~~ve~lI~~ 220 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE---------MD----------PKEYKLSRLVVEFLIEH 220 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc---------cC----------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987311 10 11223467899999999
Q ss_pred ccccC
Q 005588 368 YENIF 372 (689)
Q Consensus 368 ~~~IF 372 (689)
++++.
T Consensus 221 ~~~~~ 225 (225)
T cd04396 221 QDKFL 225 (225)
T ss_pred HHhhC
Confidence 98863
No 21
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.1e-38 Score=318.21 Aligned_cols=187 Identities=24% Similarity=0.429 Sum_probs=164.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhhCCCCCCChhhH
Q 005588 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (689)
Q Consensus 177 ~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLReLPePLlp~~ly 255 (689)
...||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|. ..+....|+|+||++||.|||+||+||+|+++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 4579999999999999999999999999999999999999999996 345567899999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccC-----------CCCCCccchhhhhcccccC
Q 005588 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----------ENRMTPSAVAACMAPLLLR 324 (689)
Q Consensus 256 ~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~-----------~NkMta~NLAivfaP~Llr 324 (689)
+.|+.+.... .++++.+++.+| .+||+.|+.+|+||+.||++|+.|++ .||||+.|||+||||+|||
T Consensus 86 ~~~i~~~~~~-~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 86 TAFIGTALLE-PDEQLEALQLLI-YLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999998765 678899999966 69999999999999999999999986 7999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
++..+...+++ ..+.+.....++.||++||+||+.||..++
T Consensus 164 ~~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 204 (206)
T cd04376 164 KQKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVSP 204 (206)
T ss_pred CCCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence 98544332221 123345556678999999999999999865
No 22
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.8e-38 Score=315.35 Aligned_cols=185 Identities=24% Similarity=0.406 Sum_probs=166.2
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc--cC----CCCCCcccchhhH
Q 005588 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EF----SADEDAHVIGDCV 238 (689)
Q Consensus 166 FG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~--~~----~~~~Dvh~VAslL 238 (689)
||+||..++.+. ..||.+|.+|+.||+++|+.+|||||++|+..+++++++.+++|.. .+ ....|||+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 999999999864 5699999999999999999999999999999999999999999852 22 1246999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhh
Q 005588 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (689)
Q Consensus 239 K~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivf 318 (689)
|.|||+||+||||.++|+.|+.+.+..+..+++..++.++ ++||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 159 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLI-NDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence 9999999999999999999999999888889999999976 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 005588 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (689)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF 372 (689)
||+|||++..+ +........++++||+||+.||
T Consensus 160 ~P~l~~~~~~~---------------------~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 160 GPTLMNAAPDN---------------------AADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhhCCCCccc---------------------hhhHHHHHHHHHHHHHHHHHhC
Confidence 99999987310 1123446789999999999998
No 23
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=4.4e-38 Score=312.63 Aligned_cols=185 Identities=25% Similarity=0.375 Sum_probs=168.3
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhh
Q 005588 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (689)
Q Consensus 166 FG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLRe 244 (689)
||+||..++.++..||.+|.+|++||+.+|+.+|||||++|+..+++++++.+++|. ......+|+|+||++||+|||+
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~ 80 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE 80 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence 999999999888889999999999999999999999999999999999999999984 3345678999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccC
Q 005588 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (689)
Q Consensus 245 LPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr 324 (689)
||+||||+++|+.|+.+....+..+++..++.+| .+||+.|+.+|+||+.||++|+.|++.|+|++.|||+||||+|+|
T Consensus 81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 81 LPEPLMTFELYENFLRAMELEEKQERVRALYSVL-EQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 9999999999999999998888889999999866 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 325 ~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
++...+ .+.+++...+...+|++||+.
T Consensus 160 ~~~~~~----------------~~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDTAD----------------PLQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCCCC----------------HHHHHHHHHHHHHHHHHHhhC
Confidence 873211 134567778889999999974
No 24
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=3.6e-38 Score=317.34 Aligned_cols=187 Identities=20% Similarity=0.302 Sum_probs=163.0
Q ss_pred cccchHHHhhh-CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhh
Q 005588 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLR 243 (689)
Q Consensus 166 FG~pL~~ll~~-~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLR 243 (689)
||+||..++.+ ++.||.+|.+|+.||+++|+.+|||||++|+..+++++++.|+.|. .......|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR 80 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR 80 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999987 4679999999999999999999999999999999999999999986 334557899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC--------------CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCC
Q 005588 244 ELPSSPVPASCCTALLEAYKID--------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (689)
Q Consensus 244 eLPePLlp~~ly~~~i~~~~~~--------------~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkM 309 (689)
+||+||||+++|+.|+.+.+.. +...++..++.+| .+||+.|+.+|+||+.||++|++|++.|||
T Consensus 81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLL-RQLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999987531 2245788999866 699999999999999999999999999999
Q ss_pred CccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 310 ta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
++.|||+||||+|||++.... ...++++....+...+|++||.|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~~--------------~~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGDA--------------DVSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCCc--------------chhHHHHHhhhhhHHHHHHHhhC
Confidence 999999999999999984211 01133455667788999999986
No 25
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.4e-38 Score=314.38 Aligned_cols=177 Identities=21% Similarity=0.369 Sum_probs=161.7
Q ss_pred ccccchHHHhhh------CCCCcHHHHHHHHHHHhcC-CCcCCeeecCCCHHHHHHHHHHhhcCC-ccC---CCCCCccc
Q 005588 165 VVGRPILLALED------IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGK-TEF---SADEDAHV 233 (689)
Q Consensus 165 vFG~pL~~ll~~------~~~VP~iL~~~i~~Le~~G-l~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~---~~~~Dvh~ 233 (689)
|||+||..+++. +..||.+|.+|+.||+++| +.+|||||++|+...++++++.|+.|. ..+ ....|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999999975 3469999999999999986 799999999999999999999999984 222 24579999
Q ss_pred chhhHHHHhhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCcc
Q 005588 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (689)
Q Consensus 234 VAslLK~fLReLPePLlp~~ly~~~i~~~~~~-~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~ 312 (689)
||++||.|||+||+||+|.++|+.|+.+.+.. +..+++..++.+| .+||+.|+.+|++|+.||++|+.|++.|+||++
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 159 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLV-SQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR 159 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999988776 7788999999976 699999999999999999999999999999999
Q ss_pred chhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005588 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (689)
Q Consensus 313 NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~ 374 (689)
|||+||||+|++|. .++..||++|+.||++
T Consensus 160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999874 4789999999999986
No 26
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.8e-38 Score=311.44 Aligned_cols=161 Identities=27% Similarity=0.509 Sum_probs=151.7
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc-cC-CCCCCcccchhhHHHHhh
Q 005588 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EF-SADEDAHVIGDCVKHVLR 243 (689)
Q Consensus 166 FG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~-~~~~Dvh~VAslLK~fLR 243 (689)
||+||..++..+..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|.. .+ ..+.|+|+||++||+|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 9999999999888999999999999999999999999999999999999999999853 33 245799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhccccc
Q 005588 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (689)
Q Consensus 244 eLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Ll 323 (689)
+||+||||+++|+.|+++....+..+++..++.+| ++||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+||
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~ 159 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELL-KKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM 159 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence 99999999999999999999888889999999976 69999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 005588 324 RPLL 327 (689)
Q Consensus 324 r~~~ 327 (689)
|+..
T Consensus 160 ~~~~ 163 (185)
T cd04373 160 RPDF 163 (185)
T ss_pred CCCC
Confidence 9873
No 27
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=6.2e-38 Score=317.34 Aligned_cols=187 Identities=21% Similarity=0.314 Sum_probs=159.7
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc-cCCCCCCcccchhhHHHHhh
Q 005588 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (689)
Q Consensus 166 FG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~Dvh~VAslLK~fLR 243 (689)
||+||..++.+. ++||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|.. ......|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR 80 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR 80 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence 999999999874 5799999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC---C-------------------HHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhh
Q 005588 244 ELPSSPVPASCCTALLEAYKID---R-------------------KEARISAMRSAILETFPEPNRRLLQRILRMMHTIS 301 (689)
Q Consensus 244 eLPePLlp~~ly~~~i~~~~~~---~-------------------~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va 301 (689)
+||+||||+++|+.|+.+.+.. + ...++.+++.+| ++||++|+.+|+||+.||++|+
T Consensus 81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLL-RQLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886421 0 013467888866 6999999999999999999999
Q ss_pred cccCCCCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 302 SHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 302 ~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
+|++.|+||+.|||+||||+||||...+. ...++.+......+.||++||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~~--------------~~~~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPTDA--------------TVSLSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCCCc--------------chhHHHHhhhhhHHHHHHHHhhC
Confidence 99999999999999999999999873211 01123345566788999999974
No 28
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=1.7e-37 Score=309.21 Aligned_cols=184 Identities=26% Similarity=0.425 Sum_probs=163.2
Q ss_pred cccccchHHHhhh---CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc-cCCCCCCcccchhhHH
Q 005588 164 LVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVK 239 (689)
Q Consensus 164 ~vFG~pL~~ll~~---~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~~~~Dvh~VAslLK 239 (689)
++||+||..++.+ .++||.+|.+|+.||+++|+.+|||||++|+...++++++.+++|.. .+..+.|||+||++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 4899999999886 35799999999999999999999999999999999999999999974 4455689999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhh
Q 005588 240 HVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (689)
Q Consensus 240 ~fLReLPePLlp~~ly~~~i~~~~~~-~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivf 318 (689)
.|||+||+||||.+.|+.|+++++.. +..+++..++.+| .+||+.|+.+|.+|+.||++|++|++.|+||+.|||+||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li-~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLL-QQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 99999999999999999999987654 6677889999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
||+|||.+.. .+ .+.....++.|+++||+|
T Consensus 160 ~P~l~~~~~~----~~---------------~~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYTD----VE---------------DMKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCCC----cc---------------cHHHHHHHHHHHHHHhcC
Confidence 9999998731 11 123345578899999987
No 29
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=3.4e-37 Score=308.39 Aligned_cols=163 Identities=19% Similarity=0.308 Sum_probs=151.9
Q ss_pred cccchHHHhhhCC-CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc---CCCCCCcccchhhHHHH
Q 005588 166 VGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHV 241 (689)
Q Consensus 166 FG~pL~~ll~~~~-~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~Dvh~VAslLK~f 241 (689)
||+||..++.+.+ .||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|... .....|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 9999999998754 5999999999999999999999999999999999999999998532 34568999999999999
Q ss_pred hhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhccc
Q 005588 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (689)
Q Consensus 242 LReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~ 321 (689)
||+||+||||+++|+.|+++....+...++.+++.++ .+||+.|+.+|++|+.||++|+++++.|||++.|||+||||+
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 159 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLL-LSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT 159 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence 9999999999999999999999888889999999966 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 005588 322 LLRPLLAG 329 (689)
Q Consensus 322 Llr~~~~~ 329 (689)
|||++...
T Consensus 160 Llr~~~~~ 167 (196)
T cd04387 160 LLRPSEKE 167 (196)
T ss_pred cCCCCccc
Confidence 99998543
No 30
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.6e-37 Score=312.01 Aligned_cols=186 Identities=23% Similarity=0.381 Sum_probs=157.7
Q ss_pred cccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc-cCC-CCCCcccchhhHHHHhh
Q 005588 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFS-ADEDAHVIGDCVKHVLR 243 (689)
Q Consensus 166 FG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~-~~~-~~~Dvh~VAslLK~fLR 243 (689)
||.||.+ ++++ +|.+|++||++ |+.+|||||++|+..+++++++.|++|.. .+. ..+|+|+||++||.|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 7888843 3455 78899999998 99999999999999999999999999964 333 35799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHh------------cCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCc
Q 005588 244 ELPSSPVPASCCTALLEAYK------------IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (689)
Q Consensus 244 eLPePLlp~~ly~~~i~~~~------------~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta 311 (689)
+||+||||.++|+.|+.+.+ ..+.+.++.+++.++ .+||+.|+.+|+||+.||++|++|++.||||+
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 152 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLL-LLLPEENRNLLKLILDLLYQTAKHEDKNKMSA 152 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 99999999999999987664 234567788999866 69999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 312 ~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
.|||+||||+|+||+..+ ...+ ......++.||++||+||+.||+.+.
T Consensus 153 ~NLAivf~P~Ll~~~~~~--------------~~~~---~~~~~~~~~iv~~lI~~~~~iF~~~~ 200 (208)
T cd04392 153 DNLALLFTPHLICPRNLT--------------PEDL---HENAQKLNSIVTFMIKHSQKLFKAPA 200 (208)
T ss_pred HHHHHHhCcccCCCCCCC--------------HHHH---HHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 999999999999986321 1111 12335678999999999999999875
No 31
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.3e-37 Score=309.94 Aligned_cols=195 Identities=22% Similarity=0.318 Sum_probs=160.6
Q ss_pred cccchHHHhhhC---CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC--ccCC--CCCCcccchhhH
Q 005588 166 VGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDCV 238 (689)
Q Consensus 166 FG~pL~~ll~~~---~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~--~~~~--~~~Dvh~VAslL 238 (689)
||+||..++.+. ..||.+|.+|+.||+.+|+.+|||||++|+..+++.+++.|+++. ..+. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 999999999873 469999999999999999999999999999999999999999874 2222 234899999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCC---HHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchh
Q 005588 239 KHVLRELPSSPVPASCCTALLEAYKIDR---KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (689)
Q Consensus 239 K~fLReLPePLlp~~ly~~~i~~~~~~~---~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLA 315 (689)
|.|||+||+||||.++|+.|+++..... ...++..++.+| ++||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li-~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSII-DCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999876543 234466788766 699999999999999999999999999999999999
Q ss_pred hhhcccccCCCCCCCC-ccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 005588 316 ACMAPLLLRPLLAGEC-ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (689)
Q Consensus 316 ivfaP~Llr~~~~~~~-~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~ 368 (689)
+||||+||+++..+.. .+....+|....+ ....+...++.+||+-|
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 206 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVST-------VDFKQHIEVLHYLLQIW 206 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccch-------hhHHHHHHHHHHHHHhc
Confidence 9999999999864432 1111222322222 23345678999999866
No 32
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.3e-36 Score=298.72 Aligned_cols=180 Identities=21% Similarity=0.392 Sum_probs=162.0
Q ss_pred ccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc---CCCCCCcccchhhHHHHhh
Q 005588 167 GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHVLR 243 (689)
Q Consensus 167 G~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~---~~~~~Dvh~VAslLK~fLR 243 (689)
|.+|+...-...+||.+|.+|+.||+++|+.+|||||++|+...++++++.|+.+... .....|||+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 7778777777789999999999999999999999999999999999999999886422 2457899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhccccc
Q 005588 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (689)
Q Consensus 244 eLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Ll 323 (689)
+||+||||.++|+.|+.+.+..+..+++..++.+| ..||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+||
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll 160 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELI-RRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF 160 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence 99999999999999999999888899999999977 59999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 005588 324 RPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (689)
Q Consensus 324 r~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~ 368 (689)
|++.. ..........||+.||+||
T Consensus 161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence 98731 0123346789999999998
No 33
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=6.1e-36 Score=298.71 Aligned_cols=177 Identities=21% Similarity=0.321 Sum_probs=157.9
Q ss_pred CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhhCCCCCCChhhH
Q 005588 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (689)
Q Consensus 177 ~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLReLPePLlp~~ly 255 (689)
...||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|. .......|+|+||++||.|||+||+||||+++|
T Consensus 14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y 93 (193)
T cd04382 14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW 93 (193)
T ss_pred CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 3469999999999999999999999999999999999999999885 334556799999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCcccc
Q 005588 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELED 335 (689)
Q Consensus 256 ~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~ 335 (689)
+.|+++.+..+.+.++..++.++ ..||+.|+.+|+||+.||++|+. ++.||||+.|||+||||+||+++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~----- 166 (193)
T cd04382 94 KEFMEAAEILDEDNSRAALYQAI-SELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP----- 166 (193)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc-----
Confidence 99999999988899999999976 69999999999999999999999 999999999999999999999873211
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005588 336 DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYEN 370 (689)
Q Consensus 336 ~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~ 370 (689)
..++++..+..++.+|+.||++-+.
T Consensus 167 ----------~~~~~~~~~~~~~~vve~Li~~~~~ 191 (193)
T cd04382 167 ----------DPMTILQDTVRQPRVVERLLEIPSD 191 (193)
T ss_pred ----------cHHHHHHHhHHHHHHHHHHHhCCcc
Confidence 1244566677788999999998654
No 34
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=2.8e-37 Score=353.60 Aligned_cols=339 Identities=18% Similarity=0.252 Sum_probs=244.6
Q ss_pred ceEEEEeeeee----ecC----CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeee-----eeCcEEcCCCccee--
Q 005588 18 TVFKSGPLFIS----SKG----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL-----TLGGIDLNNSGSVV-- 82 (689)
Q Consensus 18 ~V~KeG~L~l~----KkG----~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l-----~L~~I~L~~~~sv~-- 82 (689)
...++||||+. |+| .....|+.-|.+|.++.|+.|++.....++..+...- .-..+.+..|...+
T Consensus 922 d~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y 1001 (1973)
T KOG4407|consen 922 DSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY 1001 (1973)
T ss_pred hhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh
Confidence 36789999965 444 4578899999999999999999876533322111100 00112222222211
Q ss_pred eccCCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhCCcchhccCc-------------ccc----------
Q 005588 83 VREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGH-------------NGI---------- 139 (689)
Q Consensus 83 ~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~~~~~~g~-------------~~~---------- 139 (689)
....++..|.++. -+...+.|+|++.++|-.|+..+++......-...|++. +++
T Consensus 1002 setkrn~vfRLTt--~d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst~~s 1079 (1973)
T KOG4407|consen 1002 SETKRNQVFRLTT--NDLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPSTVPS 1079 (1973)
T ss_pred hhhhhhhHHHhHH--HHHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCCCcc
Confidence 1123445566654 134679999999999999999997665321111112210 000
Q ss_pred -----------ccCCCCc------------cccCcc------ccccCCCCC-----------------------CCcccc
Q 005588 140 -----------FRNDTND------------TIEGSF------HQWRDKRPV-----------------------KSLVVG 167 (689)
Q Consensus 140 -----------f~~~~~~------------~~~~~~------~~~k~~~~~-----------------------~~~vFG 167 (689)
|.-.... ..+... ..||+-.+. +-.+||
T Consensus 1080 sl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~~~G 1159 (1973)
T KOG4407|consen 1080 SLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQPVLG 1159 (1973)
T ss_pred hhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCcccc
Confidence 1100000 001111 223321100 124999
Q ss_pred cchHHHhh--hCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc------cCCCCCCcccchhhHH
Q 005588 168 RPILLALE--DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT------EFSADEDAHVIGDCVK 239 (689)
Q Consensus 168 ~pL~~ll~--~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~------~~~~~~Dvh~VAslLK 239 (689)
|+|..--- -.+-||.+|..|+..++.+||.+.||||++||...|..|.+.++.+.+ .+..+.|+++|.+|||
T Consensus 1160 Vrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSSLLK 1239 (1973)
T KOG4407|consen 1160 VRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSSLLK 1239 (1973)
T ss_pred cccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHHHHH
Confidence 99954221 134599999999999999999999999999999999999999999842 2345679999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhc
Q 005588 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (689)
Q Consensus 240 ~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfa 319 (689)
.|||.||+||||..+|..||++-+..+.-+|+..||.|| +.||.++|.+|++|+.||.+|+.|+++|||-+.||||+||
T Consensus 1240 ~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~-~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi~FG 1318 (1973)
T KOG4407|consen 1240 MFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLL-RKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAIMFG 1318 (1973)
T ss_pred HHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHHHhcccccccccccceeEEec
Confidence 999999999999999999999999999999999999966 7999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 320 P~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
|+|+|++. |+.+ .+..++...+.||+.||.+|+++|++.-
T Consensus 1319 PsiVRts~--------------Dnm~---tmVthM~dQckIVEtLI~~~dwfF~esg 1358 (1973)
T KOG4407|consen 1319 PSIVRTSD--------------DNMA---TMVTHMSDQCKIVETLIHYNDWFFDESG 1358 (1973)
T ss_pred cceeccCC--------------ccHH---HHhhcchhhhhHHHHHHhhhhheeccCC
Confidence 99999872 1222 2345556789999999999999999854
No 35
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.4e-36 Score=298.44 Aligned_cols=178 Identities=21% Similarity=0.245 Sum_probs=153.0
Q ss_pred cccchHHHhhhC------CCCcHHHHHHHHHHHh-cCCCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhH
Q 005588 166 VGRPILLALEDI------DGGPSFLEKALRFLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (689)
Q Consensus 166 FG~pL~~ll~~~------~~VP~iL~~~i~~Le~-~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslL 238 (689)
||+||++++.+. ..||.+|.+|+.+|.+ +|+.+|||||++|+..+++++++.+++|...+....|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 999999998652 3599999999999865 899999999999999999999999999987666678999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhccc--CCCCCCccchhh
Q 005588 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHA--HENRMTPSAVAA 316 (689)
Q Consensus 239 K~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s--~~NkMta~NLAi 316 (689)
|.|||+||+||||.++|+.++.+... ...++.+| .+||+.|+.+|.||+.||+.|++++ +.||||++|||+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~------~~~~~~li-~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAi 153 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASED------PDKAVEIV-QKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAM 153 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcC------HHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Confidence 99999999999999999999886432 23456655 6999999999999999999999754 789999999999
Q ss_pred hhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 317 vfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
||||+|||++..++ ...+.++.+...+|+.||+|
T Consensus 154 vf~P~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 154 VFAPNILRCTSDDP-----------------RVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HHccccCCCCCCCH-----------------HHHHHccHHHHHHHHHHhcC
Confidence 99999999873211 22345566788999999987
No 36
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.9e-36 Score=302.94 Aligned_cols=189 Identities=16% Similarity=0.240 Sum_probs=161.5
Q ss_pred cccchHHHhhhC-CCCcHHHHHHHHHHHhcC--CCcC----CeeecCCCHHHHHHHHHHhhcCCccC-----CCCCCccc
Q 005588 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFG--TKVE----GILRQAADVEEVDRRVQEYEQGKTEF-----SADEDAHV 233 (689)
Q Consensus 166 FG~pL~~ll~~~-~~VP~iL~~~i~~Le~~G--l~~E----GIFR~sG~~~~v~~L~~~ld~g~~~~-----~~~~Dvh~ 233 (689)
||+||..++... ..||.+|.+|+.||+++| +..+ ||||++|+.+.+++|++.|++|.... ...+|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 999999999875 469999999999999965 3333 99999999999999999999985332 34689999
Q ss_pred chhhHHHHhhhCCCCCCChhhHHHHHHHHhc------CCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCC
Q 005588 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKI------DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (689)
Q Consensus 234 VAslLK~fLReLPePLlp~~ly~~~i~~~~~------~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~N 307 (689)
||++||.|||+||+||||+++|+.|+++... .+.++++.+++.++ .+||+.|+.+|++|+.||.+|+.++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l-~~LP~~n~~~L~~li~hL~rv~~~~~~~ 159 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTL-SQLPKSHIATLDAIITHFYRLIEITKMG 159 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887532 46789999999966 6999999999999999999999987666
Q ss_pred ---CCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Q 005588 308 ---RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (689)
Q Consensus 308 ---kMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~ 374 (689)
||+++|||+||||+|+|+...... . ....+...+|++||+||+.||++
T Consensus 160 ~~~kM~~~nLa~vfgp~llr~~~~~~~------~-------------~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 160 ESEEEYADKLATSLSREILRPIIESLL------T-------------IGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred cccccCHHHHHHHhhhhhcCCCccccc------c-------------cccHHHHHHHHHHHHhHHHhccc
Confidence 699999999999999998742210 0 11245678999999999999986
No 37
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-35 Score=297.40 Aligned_cols=171 Identities=24% Similarity=0.406 Sum_probs=150.1
Q ss_pred CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHH-hhcC-----CccCCC-CCCcccchhhHHHHhhhCCCCCC
Q 005588 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQG-----KTEFSA-DEDAHVIGDCVKHVLRELPSSPV 250 (689)
Q Consensus 178 ~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~-ld~g-----~~~~~~-~~Dvh~VAslLK~fLReLPePLl 250 (689)
+..|.||.+|+.||+++|+.+|||||++|+..+|+++++. ++.+ ..++.. .+|+|+||++||.|||+||+|||
T Consensus 26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi 105 (203)
T cd04374 26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLM 105 (203)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcC
Confidence 3456689999999999999999999999999999999875 5654 233333 57999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCC
Q 005588 251 PASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGE 330 (689)
Q Consensus 251 p~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~ 330 (689)
|+++|+.|+.+.+..+.+.++..++.+| .+||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||+...
T Consensus 106 ~~~~y~~~i~~~~~~~~~~ri~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~-- 182 (203)
T cd04374 106 TYELHNDFINAAKSENLESRVNAIHSLV-HKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEE-- 182 (203)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCc--
Confidence 9999999999999988899999999976 6999999999999999999999999999999999999999999998721
Q ss_pred CccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 331 CELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 331 ~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
+ .+++......+.+|++||+|
T Consensus 183 ------------~----~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 183 ------------T----VAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred ------------c----HHHHHHhHHHHHHhhhHhcC
Confidence 0 22345566778899999987
No 38
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=4.2e-35 Score=292.69 Aligned_cols=177 Identities=19% Similarity=0.279 Sum_probs=150.1
Q ss_pred hHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhhCCCC
Q 005588 170 ILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSS 248 (689)
Q Consensus 170 L~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLReLPeP 248 (689)
|.+.+...+.+|.+|.+|+.+|+++|+++|||||++|+.. +.++++.|+.+. ......+|+|+||++||.|||+||+|
T Consensus 5 ~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPeP 83 (200)
T cd04388 5 LTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNP 83 (200)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCc
Confidence 3344444578999999999999999999999999999875 778999999853 33345789999999999999999999
Q ss_pred CCChhhHHHHHHHHh-cCCHHHHHHHHHHHHh-ccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCC
Q 005588 249 PVPASCCTALLEAYK-IDRKEARISAMRSAIL-ETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (689)
Q Consensus 249 Llp~~ly~~~i~~~~-~~~~e~ri~~l~~lIl-~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~ 326 (689)
|||+++|+.|+++.+ ..+.++++..++.+|. ..||+.|+.+|+||+.||++|++|+..|+||++|||+||||+|||++
T Consensus 84 Lip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~ 163 (200)
T cd04388 84 VIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQ 163 (200)
T ss_pred cCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCC
Confidence 999999999999874 5567788999998662 27999999999999999999999999999999999999999999997
Q ss_pred CCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 005588 327 LAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (689)
Q Consensus 327 ~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~ 368 (689)
.... ....+...+|++||.++
T Consensus 164 ~~~~---------------------~~~~~~~~vvE~Li~~~ 184 (200)
T cd04388 164 PASS---------------------DSPEFHIRIIEVLITSE 184 (200)
T ss_pred cccc---------------------cchhhHHHHHHHHHHHH
Confidence 4311 11234678999999863
No 39
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-32 Score=305.22 Aligned_cols=320 Identities=19% Similarity=0.300 Sum_probs=234.7
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCC---CceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecCh
Q 005588 34 WKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (689)
Q Consensus 34 ~k~WkKRWFVL~~~~L~YYKd~~~~~p~~---~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSe 110 (689)
...|..-|..+.++.++||.+.+.+..-+ ...-........+...............+++......+..|+++-.++
T Consensus 270 ~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne 349 (650)
T KOG1450|consen 270 STVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNE 349 (650)
T ss_pred CcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCC
Confidence 34499999999999999998876554322 111111111122222111111111222344444344567899999999
Q ss_pred HHHHHHHHHHHHHHhhCCcchhccCccccccC--CC--------------------------Ccc---ccCc--------
Q 005588 111 EDLYEWKTALELALAQAPSAALVMGHNGIFRN--DT--------------------------NDT---IEGS-------- 151 (689)
Q Consensus 111 eE~~eWi~AL~~ai~~aP~~~~~~g~~~~f~~--~~--------------------------~~~---~~~~-------- 151 (689)
.....|..++..++...|+++..-.+ |.-+. +. +.. +.+.
T Consensus 350 t~~~d~~~~~~~~~~~~~~~~s~~s~-g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~ 428 (650)
T KOG1450|consen 350 TSFEDWSSNLPEVINELPNSASPNSQ-GDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDP 428 (650)
T ss_pred ccccchhhcchhhhhccCCCCCCCCC-CCCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccch
Confidence 99999999999999866553322111 10000 00 000 0000
Q ss_pred -------------cccccCCC-CCCCcccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHH
Q 005588 152 -------------FHQWRDKR-PVKSLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQ 216 (689)
Q Consensus 152 -------------~~~~k~~~-~~~~~vFG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~ 216 (689)
....+.++ +...+|||++|..+|++. +.||.+|.+|+..|+..|++.+||||++|+...|++|+.
T Consensus 429 ~~~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~ 508 (650)
T KOG1450|consen 429 QKKLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLRE 508 (650)
T ss_pred HHHHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHH
Confidence 00012222 223689999999999985 569999999999999999999999999999999999999
Q ss_pred HhhcCC-ccC--CCCCCcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHH
Q 005588 217 EYEQGK-TEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRI 293 (689)
Q Consensus 217 ~ld~g~-~~~--~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~L 293 (689)
+++... ..+ ..+.|+|+|+++||.|||+||+||+|..++..|..+........+...+..+| ..||.+|+.||+||
T Consensus 509 ~~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li-~~lP~~n~~Tlr~l 587 (650)
T KOG1450|consen 509 QSDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELI-GLLPDANYQTLRYL 587 (650)
T ss_pred hcCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHH-hhCCCcchhHHHHH
Confidence 999543 333 33479999999999999999999999999999999999999899999999987 59999999999999
Q ss_pred HHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 005588 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD 373 (689)
Q Consensus 294 l~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~ 373 (689)
+.||++|..|++.|||+.+||||||||+|+.+.... ...+........||+.||+++..+|+
T Consensus 588 v~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~------------------~~~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 588 VRHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQET------------------SSEAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred HHHHHHHHhccccccccccceEEEeccccccccccc------------------cchhhHHhHHHHHHHHHHHhhHhhcc
Confidence 999999999999999999999999999999965211 01233456678999999999999997
No 40
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.98 E-value=6.8e-32 Score=264.30 Aligned_cols=170 Identities=29% Similarity=0.488 Sum_probs=154.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccC--CCCCCcccchhhHHHHhhhCCCCCCChhhHH
Q 005588 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (689)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~--~~~~Dvh~VAslLK~fLReLPePLlp~~ly~ 256 (689)
.||.+|.+|+.||+++|+.+|||||++|+..+++++++.+++|.... ...+|+|+||++||.|||+||+||||.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999987544 6789999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccc
Q 005588 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDD 336 (689)
Q Consensus 257 ~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~ 336 (689)
.|+.+....+..+++..++.++ .+||+.|+.+|.+|+.||+.|+.|++.|+|++.|||+||||+|+|++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~------- 153 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELI-SLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGE------- 153 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCccc-------
Confidence 9999998888889999999966 69999999999999999999999999999999999999999999987321
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 337 FDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 337 ~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
........+...+|++||+|
T Consensus 154 -----------~~~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 154 -----------VASLKDIRHQNTVVETLIEN 173 (174)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhc
Confidence 11234556788999999987
No 41
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.98 E-value=3.7e-32 Score=303.91 Aligned_cols=323 Identities=19% Similarity=0.331 Sum_probs=240.1
Q ss_pred CceEEEEeeeeeecCC--------CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee--cc-
Q 005588 17 NTVFKSGPLFISSKGI--------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--RE- 85 (689)
Q Consensus 17 ~~V~KeG~L~l~KkG~--------~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~--~~- 85 (689)
..+...|+||..-... .+.--.++||||-|+.|+||.+.....|.+ .|.+....++.+ .+
T Consensus 490 ~s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~---------lI~~~Eivclav~~pd~ 560 (1186)
T KOG1117|consen 490 QSTFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNG---------LININEIVCLAVHPPDT 560 (1186)
T ss_pred ccccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCc---------eeeccceEEEeecCCCC
Confidence 4456669999552211 134467999999999999999988877443 344443322211 11
Q ss_pred --CCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhCCcchh--------ccC-------------ccccccC
Q 005588 86 --DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAAL--------VMG-------------HNGIFRN 142 (689)
Q Consensus 86 --~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~~~~--------~~g-------------~~~~f~~ 142 (689)
...++|++..-...+|.|+|-+++.++...|..+|.++. .|..+. ..| ++|+|..
T Consensus 561 ~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhf--vp~~~e~l~a~~~~llg~l~~kd~~~~~~~r~gwfsl 638 (1186)
T KOG1117|consen 561 YPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKHF--VPLFAENLLAADYDLLGRLFYKDCHALDQARKGWFSL 638 (1186)
T ss_pred CCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHhc--CchHHHHhccchhhhhhhhhhcChhhhhhccccceec
Confidence 123556665555678999999999999999999998875 333221 111 3677776
Q ss_pred CCCcc--------cc---------------CccccccCCCCCCCcccccch----------------------------H
Q 005588 143 DTNDT--------IE---------------GSFHQWRDKRPVKSLVVGRPI----------------------------L 171 (689)
Q Consensus 143 ~~~~~--------~~---------------~~~~~~k~~~~~~~~vFG~pL----------------------------~ 171 (689)
+.+.. .+ ++..+.-++.++--..=|+.| .
T Consensus 639 ~gssl~~~~~~~~ve~d~~hlrrlqElsi~s~~~n~~K~~~l~lve~grTLYI~g~~rldft~W~~AIekaa~~~gt~Lq 718 (1186)
T KOG1117|consen 639 DGSSLHFCLQMQPVEEDRMHLRRLQELSISSMVQNGEKLDVLVLVEKGRTLYIQGETRLDFTVWHTAIEKAAGTDGTALQ 718 (1186)
T ss_pred CCCeeEEecCCCcCchhHHHHHHHHHHhhhhccCCcccccceEEEeeccEEEEecCCcchHHHHHHHHHHHhcCCcchhh
Confidence 55431 11 112221111111111112222 1
Q ss_pred HHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccC---CCCCCcccchhhHHHHhhhCCCC
Q 005588 172 LALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVKHVLRELPSS 248 (689)
Q Consensus 172 ~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~---~~~~Dvh~VAslLK~fLReLPeP 248 (689)
+..-..+.||.||..||.|+.++|+..|||||++|...++.+|...|-+....+ ..+.-+.+|+++||+|||+|++|
T Consensus 719 eqqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Flrdlddp 798 (1186)
T KOG1117|consen 719 EQQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDDP 798 (1186)
T ss_pred hhhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCcc
Confidence 111114679999999999999999999999999999999999999998764322 34567899999999999999999
Q ss_pred CCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCC
Q 005588 249 PVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLA 328 (689)
Q Consensus 249 Llp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~ 328 (689)
|+|.++|..|+++....+.++++..+..+| ..||..||.+|..||.||++|..+++.|+|+++|||+||||+||.....
T Consensus 799 Lft~~~~~~w~eaae~~d~~Er~~rY~~lI-~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdgq 877 (1186)
T KOG1117|consen 799 LFTKELYPYWIEAAETQDDKERIKRYGALI-RSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDGQ 877 (1186)
T ss_pred ccchhhhhhHHHhhhccchHHHHHHHHHHH-hhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCCC
Confidence 999999999999999999999999999987 5999999999999999999999999999999999999999999986511
Q ss_pred CCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588 329 GECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 329 ~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
..+..+|++-||.+|..+|.-+.
T Consensus 878 -------------------------dehevnVledLingYvvVF~v~e 900 (1186)
T KOG1117|consen 878 -------------------------DEHEVNVLEDLINGYVVVFEVDE 900 (1186)
T ss_pred -------------------------chhhhhHHHHHhcCceEEEEecH
Confidence 13467899999999999998654
No 42
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-30 Score=290.65 Aligned_cols=295 Identities=18% Similarity=0.176 Sum_probs=211.9
Q ss_pred CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecChHH
Q 005588 33 GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSED 112 (689)
Q Consensus 33 ~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE 112 (689)
..|.|.+|++....-.++||.+.+.....+.. .+.+..+..... .... +-+.|. ..
T Consensus 49 ~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~~~~--e~e~--~~~kie----------------~~ 104 (577)
T KOG4270|consen 49 EEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLF----RLPGAKIDTLKE--EEEE--CGMKIE----------------QP 104 (577)
T ss_pred HHHHHHhhhhhcchhhhhhhhhhhhhhhcccc----ccCcchhhhhhc--hHHh--hcCccc----------------cC
Confidence 36789999999999999999887766533221 111111111000 0011 112221 11
Q ss_pred HHHHHHHHHHHHhhCCcchhccCccccccCCCCccccCccccccCCCCCCCcccccchHHHhhh----CCCCcHHHHHHH
Q 005588 113 LYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALED----IDGGPSFLEKAL 188 (689)
Q Consensus 113 ~~eWi~AL~~ai~~aP~~~~~~g~~~~f~~~~~~~~~~~~~~~k~~~~~~~~vFG~pL~~ll~~----~~~VP~iL~~~i 188 (689)
.+.|..+.-...+.- |.-..|+... +-.....+........||||++..+-.. .+.||.++..+.
T Consensus 105 ~d~~~~~~~~f~~~~-------~~~~f~~~~~----e~q~~~~rrals~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~ 173 (577)
T KOG4270|consen 105 TDQRHADHVTFDRKE-------GEYLFLGLPV----EFQPDYHRRALSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQ 173 (577)
T ss_pred cchhhhhhhhhhhhc-------chhhhccchh----hhccccccccccchhhhhcchHHhhhcccccCCCcchhhhHhhh
Confidence 233655544443311 1000233221 1111223444555678999999776543 334799999888
Q ss_pred H-HHHh-cCCCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCC
Q 005588 189 R-FLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDR 266 (689)
Q Consensus 189 ~-~Le~-~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~ 266 (689)
. +|+. +|++.|||||++|...+++.++++||.|.+......|||+||++||.|||+||+|++++.+|++|+.+....+
T Consensus 174 ~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~~ 253 (577)
T KOG4270|consen 174 SGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCEN 253 (577)
T ss_pred hhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccC
Confidence 8 6664 8999999999999999999999999999644333789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHH
Q 005588 267 KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQ 346 (689)
Q Consensus 267 ~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~ 346 (689)
.+++...++.++ .+||+.|+.+|+|+|+||+.|++++++||||++||||||||+|+|+.. ....
T Consensus 254 e~~~~q~lr~~~-~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~---------------p~~~ 317 (577)
T KOG4270|consen 254 EDEKVQLLRQCL-QKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKD---------------PLTA 317 (577)
T ss_pred HHHHHHHHHHHH-HhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCC---------------hHHH
Confidence 999999999955 799999999999999999999999999999999999999999999872 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCcc
Q 005588 347 LLAAANAANNAQAIIATLLEEYENIFDDESLH 378 (689)
Q Consensus 347 l~~~~~~~~~~~~iVe~LIen~~~IF~~~~~~ 378 (689)
++.+.+..+.+..+|+..|++++..|+...-.
T Consensus 318 l~~avqvs~~~~~lie~~l~~~~~~~~g~~~~ 349 (577)
T KOG4270|consen 318 LMYAVQVSNFLKGLIEKTLEERDTSFPGELEF 349 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Confidence 44445555566677788888888888776643
No 43
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.97 E-value=2.6e-31 Score=289.71 Aligned_cols=209 Identities=24% Similarity=0.333 Sum_probs=175.6
Q ss_pred CCcccccchHHHhhhCC-CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc---cCCCCCCcccchhh
Q 005588 162 KSLVVGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EFSADEDAHVIGDC 237 (689)
Q Consensus 162 ~~~vFG~pL~~ll~~~~-~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~~~~~Dvh~VAsl 237 (689)
.+.||||||..++++.+ .||.+|.++++||+++|++++||||++|...+|+.|++.++..-. ..++....|+||++
T Consensus 297 d~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl 376 (674)
T KOG2200|consen 297 DGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL 376 (674)
T ss_pred CCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence 35799999999999744 599999999999999999999999999999999999999887432 23456779999999
Q ss_pred HHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhh
Q 005588 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (689)
Q Consensus 238 LK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAiv 317 (689)
||.|||+||+||||.++.+.|+.+++..+..+++.+++.+|+ .||.+||.+|+.|+.||.+|+.+.+.|+||+.|||+|
T Consensus 377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvc 455 (674)
T KOG2200|consen 377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVC 455 (674)
T ss_pred HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhh
Confidence 999999999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCCccccccCC-----CCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588 318 MAPLLLRPLLAGECELEDDFDM-----NGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 318 faP~Llr~~~~~~~~le~~~~~-----~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
|||+||........ ..+..+ .|... ...+..+.-+..++..||.+++.+|.-+.
T Consensus 456 mAPsLF~l~~~~~d--~spr~~~~k~~~g~p~---~kel~~a~aaa~~l~~mI~y~k~Lf~VP~ 514 (674)
T KOG2200|consen 456 MAPSLFHLNALKLD--SSPRVRQKKSETGKPD---QKELNEALAAAQGLAHMIKYQKLLFTVPS 514 (674)
T ss_pred hcchHHhhccCCCC--CCccccccccccCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 99999986532211 000000 01110 11233444567899999999999998765
No 44
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.97 E-value=1.6e-30 Score=264.95 Aligned_cols=142 Identities=18% Similarity=0.283 Sum_probs=128.2
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHH----HHHHHHHhhcCCccCCCCCCcccchhhHHHHhhhCCCCCCChhh
Q 005588 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEE----VDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASC 254 (689)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~----v~~L~~~ld~g~~~~~~~~Dvh~VAslLK~fLReLPePLlp~~l 254 (689)
.||.+|.+|++||+++|+.+|||||++|+... ++++++.+|+|.... ...|+|+||++||.|||+||+||||+++
T Consensus 49 ~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~ 127 (220)
T cd04380 49 SIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSL 127 (220)
T ss_pred ccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHH
Confidence 48999999999999999999999999999999 999999999985433 6789999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-cCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCC
Q 005588 255 CTALLEAYKIDRKEARISAMRSAILE-TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (689)
Q Consensus 255 y~~~i~~~~~~~~e~ri~~l~~lIl~-~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~ 327 (689)
|+.|+++... +. ..++. +++ +||+.|+.+|.||+.||++|+.+++.|+|++.|||+||||+|+|++.
T Consensus 128 y~~~~~~~~~-~~----~~~~~-ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~ 195 (220)
T cd04380 128 YERLLEAVAN-NE----EDKRQ-VIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPP 195 (220)
T ss_pred HHHHHHHhcC-cH----HHHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence 9999998622 21 23455 346 99999999999999999999999999999999999999999999884
No 45
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.97 E-value=9.8e-30 Score=246.37 Aligned_cols=168 Identities=31% Similarity=0.529 Sum_probs=152.3
Q ss_pred cHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc-CCCCCCcccchhhHHHHhhhCCCCCCChhhHHHHH
Q 005588 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALL 259 (689)
Q Consensus 181 P~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~-~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~i 259 (689)
|.+|.+|+.||+++|+.++||||++|+..+++++++.++.|... .....|+|++|++||.|||+||+||||.+.|+.|+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999754 56788999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccccCC
Q 005588 260 EAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDM 339 (689)
Q Consensus 260 ~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~ 339 (689)
.+....+...++..++.++ ..||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+|++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i-~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~---------- 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELL-KSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---------- 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence 9999888899999999976 59999999999999999999999999999999999999999999987321
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 340 NGDNSAQLLAAANAANNAQAIIATLLEE 367 (689)
Q Consensus 340 ~g~~~~~l~~~~~~~~~~~~iVe~LIen 367 (689)
............+|++||.|
T Consensus 150 --------~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 --------DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred --------HHHHHHhHHHHHHHHHHHhC
Confidence 11233455678899999975
No 46
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.96 E-value=4.3e-30 Score=288.97 Aligned_cols=186 Identities=21% Similarity=0.379 Sum_probs=164.0
Q ss_pred CCCCCcccccchHHHhh-----hCCCCcHHHHHHHHHHH-hcCCCcCCeeecCCCHHHHHHHHHHhhcC-Ccc---CCCC
Q 005588 159 RPVKSLVVGRPILLALE-----DIDGGPSFLEKALRFLE-KFGTKVEGILRQAADVEEVDRRVQEYEQG-KTE---FSAD 228 (689)
Q Consensus 159 ~~~~~~vFG~pL~~ll~-----~~~~VP~iL~~~i~~Le-~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~~~---~~~~ 228 (689)
...++.|||.|+..-+. ...++|.+|.+|++||+ .+|++.|||||++|.+..|+.|++.||.+ ..+ ...+
T Consensus 893 ~~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E 972 (1112)
T KOG4269|consen 893 SVKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSE 972 (1112)
T ss_pred cceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhcccc
Confidence 34468899987744332 23479999999999999 59999999999999999999999999998 322 2456
Q ss_pred CCcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCC
Q 005588 229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENR 308 (689)
Q Consensus 229 ~Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~Nk 308 (689)
.|||+|||+||+|||+||+|||+.++|..|.......+...+...+..+| ..||++|+.+|.+|+.||.+|+.++.+||
T Consensus 973 ~dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li-~slP~aNl~l~~~LlehL~RI~e~ekvNK 1051 (1112)
T KOG4269|consen 973 MDVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLI-SSLPPANLALFLFLLEHLKRIAEKEKVNK 1051 (1112)
T ss_pred ccHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHH-HhCCChhHHHHHHHHHHHHHHHhhccccc
Confidence 79999999999999999999999999999999999999999999999977 48999999999999999999999999999
Q ss_pred CCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCc
Q 005588 309 MTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (689)
Q Consensus 309 Mta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (689)
|+++||||||+|+|.+|. .+...+|.+|+.||.+-..
T Consensus 1052 MnlrNlciVFsPTLniPs--------------------------------e~~~~li~n~d~if~dv~~ 1088 (1112)
T KOG4269|consen 1052 MNLRNLCIVFSPTLNIPS--------------------------------EIESKLILNYDHIFTDVMR 1088 (1112)
T ss_pred ccccceeeeecccccCcH--------------------------------HhhhhhccchhhhhccchH
Confidence 999999999999999986 2356678889999988653
No 47
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.96 E-value=3.7e-29 Score=264.78 Aligned_cols=202 Identities=24% Similarity=0.338 Sum_probs=175.8
Q ss_pred CCCCCCCcccccchHHHhhh---CCCCcHHHHHHHHHHHhcC-CCcCCeeecCCCHHHHHHHHHHhhcCCccCCCC-CCc
Q 005588 157 DKRPVKSLVVGRPILLALED---IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDA 231 (689)
Q Consensus 157 ~~~~~~~~vFG~pL~~ll~~---~~~VP~iL~~~i~~Le~~G-l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~-~Dv 231 (689)
.+.+++++.||+||..+.+. +..+|.+|..|+.+|..+| +.+|||||++++...+.++.+.+++|..+..+. -|+
T Consensus 245 pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~ 324 (467)
T KOG4406|consen 245 PRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL 324 (467)
T ss_pred CCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence 35678899999999888765 4679999999999999999 999999999999999999999999997554444 459
Q ss_pred ccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCc
Q 005588 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (689)
Q Consensus 232 h~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta 311 (689)
|..|.+||.|||+||+||+++++|..+...... +...+...+++++-.+||+.|+.++++++.||.+|+.|+..|+||+
T Consensus 325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~-~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~ 403 (467)
T KOG4406|consen 325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNV-DKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTA 403 (467)
T ss_pred hhhHHHHHHHHhcCCcccchhhhhhhhhccccc-hHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhcc
Confidence 999999999999999999999999988776554 3477888899988667999999999999999999999999999999
Q ss_pred cchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcc
Q 005588 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLH 378 (689)
Q Consensus 312 ~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~~~ 378 (689)
.|||+||||+|+|+..... .+.+.+.++.++++||+||..||..+...
T Consensus 404 sNLa~vfGpnl~w~~~~s~-------------------tl~q~npin~F~~~li~~~~~~f~~~~~~ 451 (467)
T KOG4406|consen 404 SNLAVVFGPNLLWAQDESL-------------------TLKQINPINKFTKFLIEHYKKLFTTPENA 451 (467)
T ss_pred ccceeeecccccccccccc-------------------cHHHhccHHHHHHHHHHhhhhccCCCCCc
Confidence 9999999999999873211 12345678999999999999999988743
No 48
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.96 E-value=3.6e-29 Score=238.90 Aligned_cols=145 Identities=30% Similarity=0.529 Sum_probs=136.3
Q ss_pred cHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCcc--CCCCCCcccchhhHHHHhhhCCCCCCChhhHHHH
Q 005588 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (689)
Q Consensus 181 P~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~--~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~ 258 (689)
|.+|..|+.||+++|+.++||||++|+..+++++++.++.|... .....|+|+||++||.||++||+||+|.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999999755 6788999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCC
Q 005588 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (689)
Q Consensus 259 i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~ 326 (689)
+.+.+..+..+++..++.++ .+||+.|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l-~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~ 147 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLL-QSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP 147 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred hhhhccchhhHHHHHHHHhh-hccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence 99888889999999999966 69999999999999999999999999999999999999999999987
No 49
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=1.2e-27 Score=258.58 Aligned_cols=206 Identities=21% Similarity=0.382 Sum_probs=170.1
Q ss_pred CCCCcccccchHHHhhh-------------CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcC-----
Q 005588 160 PVKSLVVGRPILLALED-------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG----- 221 (689)
Q Consensus 160 ~~~~~vFG~pL~~ll~~-------------~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g----- 221 (689)
.....+||+++...+.. ...||.+|.+|+.||.++|+.+.||||++|+.++|++|.+.|+++
T Consensus 61 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~ 140 (412)
T KOG2710|consen 61 VLDGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGI 140 (412)
T ss_pred ccceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCccccc
Confidence 34456777777555432 134899999999999999999999999999999999999999997
Q ss_pred CccCCCCCCcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhh
Q 005588 222 KTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTIS 301 (689)
Q Consensus 222 ~~~~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va 301 (689)
+...++.+++|+||++||.|||+||+||||.++|+.|+..+....+.+++..++.++. .||+.|+.+|.+|+.||+.|+
T Consensus 141 ~~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~~-llp~~nr~~l~~ll~fL~~~a 219 (412)
T KOG2710|consen 141 DVNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLIY-LLPKCNRDTLEVLLGFLSVVA 219 (412)
T ss_pred cccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHHH-hcCccchhHHHHHHhhhhhhh
Confidence 3556678899999999999999999999999999999999999988899999998775 999999999999999999999
Q ss_pred cccCCC-----------CCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccc
Q 005588 302 SHAHEN-----------RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYEN 370 (689)
Q Consensus 302 ~~s~~N-----------kMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~ 370 (689)
.|++.| +|++.|||+||+|+|+....... ...++.+-. .......+..++++||+||+.
T Consensus 220 ~~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k~~~~~----~~~s~~~~~------~~s~~~~i~~~~~~~~~N~e~ 289 (412)
T KOG2710|consen 220 SHAEDNIGKDGQEVNGNKMTSENLATIFGPNILYKLKGSH----KELSVTGVA------NESESEAIVNFAQMMIENLEA 289 (412)
T ss_pred cccccccccccccccCcccchhhhhhhhcchhhhcccCCC----ccccccccc------chhhHHHHHHHHHHhhhhHHH
Confidence 999999 99999999999999999532111 111111111 011223467889999999999
Q ss_pred cCCCCC
Q 005588 371 IFDDES 376 (689)
Q Consensus 371 IF~~~~ 376 (689)
+|..++
T Consensus 290 ~f~ip~ 295 (412)
T KOG2710|consen 290 LFQIPP 295 (412)
T ss_pred hhcCCc
Confidence 999554
No 50
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.94 E-value=1e-27 Score=264.44 Aligned_cols=241 Identities=18% Similarity=0.186 Sum_probs=215.6
Q ss_pred CCCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhH
Q 005588 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (689)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslL 238 (689)
.+.++.+||.||..+|.+.+ +|..+..++-+|...|.-++||||..++.+.++++++.++.|..+-.....+|++|.++
T Consensus 76 ~~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~ 154 (741)
T KOG4724|consen 76 NTADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVD 154 (741)
T ss_pred CCCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhh
Confidence 45678899999999999977 99999999999999999999999999999999999999999977777788999999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhh
Q 005588 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (689)
Q Consensus 239 K~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivf 318 (689)
|.|||.+|..+|...+|+.|+-+....+.+++|.+|+++. .+||..|..+|++|+..| .|..++..|.|+..|||+|+
T Consensus 155 kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~~-d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv 232 (741)
T KOG4724|consen 155 KDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQG-DRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCV 232 (741)
T ss_pred hchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHHH-hhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHh
Confidence 9999999999999999999999999999999999999955 799999999999999999 99999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccccCCCCCCCCCCCCCCCCc
Q 005588 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSD 398 (689)
Q Consensus 319 aP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~~~~~~~s~~~~~~~s~~e~ssd 398 (689)
+|+++++......+++..++ +++.-+++|||+||-.|||++.... +..++......|+.+|
T Consensus 233 ~p~~l~~~~~~s~e~~k~ln----------------~kv~~l~~flI~nclrifGe~i~~~---fr~~s~~s~~~e~~sd 293 (741)
T KOG4724|consen 233 NPIKLKVLTRTSSEFGKGLN----------------GKVPPLPIFLIVNCLRIFGEDIEGI---FRKSSKQSTFKELKSD 293 (741)
T ss_pred cchhcccccccChhhhcccc----------------CCCCCceeeehhhhHHhhcccccce---eecccccccchhhhhh
Confidence 99999998765555544332 2355679999999999999999654 4455667778899999
Q ss_pred cccccccCCCCCCCCCCCCCCCCC
Q 005588 399 EENLDMKNNGYHDAQNEVDPESDD 422 (689)
Q Consensus 399 ~~~~~~~d~s~~s~e~e~~~~~d~ 422 (689)
-+.++. |+.||+.+++++.+.|.
T Consensus 294 ~s~~q~-Ds~yds~~~~~~~~~~~ 316 (741)
T KOG4724|consen 294 LSKGQV-DSHYDSTHVLASILKEY 316 (741)
T ss_pred hccccc-cccccccchhhhhhhhh
Confidence 999998 99999999988876654
No 51
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.91 E-value=8.3e-25 Score=261.57 Aligned_cols=162 Identities=26% Similarity=0.430 Sum_probs=150.2
Q ss_pred ccccchHHHhh-hCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHh
Q 005588 165 VVGRPILLALE-DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVL 242 (689)
Q Consensus 165 vFG~pL~~ll~-~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fL 242 (689)
.||+.|..++. ....||.++.+|+.+|+.+|+.+|||||++|...+++.|...|+.|. .+.....|+|+|++|||.||
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL 681 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence 99999999998 56689999999999999999999999999999999999999999986 56667899999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhcCCHH------HHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhh
Q 005588 243 RELPSSPVPASCCTALLEAYKIDRKE------ARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (689)
Q Consensus 243 ReLPePLlp~~ly~~~i~~~~~~~~e------~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAi 316 (689)
|+||+|||++.+|+.|+.+.+..... +++..+..++ ..||+.|+.+|++|+.||.+|+.+++.|+|++.|||+
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai 760 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVL-EQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI 760 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHHHH-HhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence 99999999999999999998883333 4888899865 6999999999999999999999999999999999999
Q ss_pred hhcccccCCCC
Q 005588 317 CMAPLLLRPLL 327 (689)
Q Consensus 317 vfaP~Llr~~~ 327 (689)
||||+|+|++.
T Consensus 761 vF~Ptllr~~d 771 (918)
T KOG1453|consen 761 VFAPTLLRPPD 771 (918)
T ss_pred cccCcccCCCC
Confidence 99999999984
No 52
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.90 E-value=1.7e-23 Score=223.85 Aligned_cols=181 Identities=22% Similarity=0.347 Sum_probs=153.5
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC-ccCCCCCCcccchhhHHHHhhhCCCCCCChhhHHH
Q 005588 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTA 257 (689)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~-~~~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~ 257 (689)
-||.+|..|+..|+.+|+.++||||++|....+++|+..|-+|+ .......|+|+||++||.|||+|.+||||+.+..+
T Consensus 361 MIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~rd 440 (604)
T KOG3564|consen 361 MIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRRD 440 (604)
T ss_pred cchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHHH
Confidence 48999999999999999999999999999999999999999997 44556789999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCcccccc
Q 005588 258 LLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDF 337 (689)
Q Consensus 258 ~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~ 337 (689)
|+++....+...-+.++-..|. .||..||.+|.|||-|+++||+ +..|||+..|||.+|||+++..+..++ +
T Consensus 441 f~eAa~~tD~dn~~~aly~aV~-ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~p----d-- 512 (604)
T KOG3564|consen 441 FMEAAEITDEDNSILALYQAVG-ELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNP----D-- 512 (604)
T ss_pred HHHHhcCCCchhHHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCc----c--
Confidence 9999999998888888888786 8999999999999999999998 889999999999999999998653221 0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHH----HhccccCCCCC
Q 005588 338 DMNGDNSAQLLAAANAANNAQAIIATLL----EEYENIFDDES 376 (689)
Q Consensus 338 ~~~g~~~~~l~~~~~~~~~~~~iVe~LI----en~~~IF~~~~ 376 (689)
...+......+.++|+.|+ ++|.++.+-++
T Consensus 513 ---------~~~~l~dv~~q~rvmkaLlelp~~yWsqfl~v~~ 546 (604)
T KOG3564|consen 513 ---------QVTMLQDVKTQPRVMKALLELPLEYWSQFLGVEP 546 (604)
T ss_pred ---------HhHHHHhhhhhHHHHHHHHhCCHHHHHHhhcccc
Confidence 1223444455556666665 45555555444
No 53
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.76 E-value=8.2e-19 Score=199.72 Aligned_cols=161 Identities=23% Similarity=0.398 Sum_probs=147.6
Q ss_pred CCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcC-CccC-CCCCCcccchhhHH
Q 005588 162 KSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF-SADEDAHVIGDCVK 239 (689)
Q Consensus 162 ~~~vFG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g-~~~~-~~~~Dvh~VAslLK 239 (689)
....||+||..+......||.++++|+.||++.|+.+|||||++|+......++++|.+. ..+. .-+..+|+||+.+|
T Consensus 914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlk 993 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALK 993 (1100)
T ss_pred hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcch
Confidence 457999999888888889999999999999999999999999999999999999999873 3332 23567999999999
Q ss_pred HHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhc
Q 005588 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (689)
Q Consensus 240 ~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfa 319 (689)
.||..||+||+|+.+...|.+++.+.+...++..++..+ ..||+.|+.+++|++.||.+|+....+|.||..||+|||+
T Consensus 994 sffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~-a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~ 1072 (1100)
T KOG4271|consen 994 SFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREAS-AKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFP 1072 (1100)
T ss_pred hhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHh-hhcCchHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999866 6999999999999999999999999999999999999998
Q ss_pred cccc
Q 005588 320 PLLL 323 (689)
Q Consensus 320 P~Ll 323 (689)
|.|+
T Consensus 1073 ~~~~ 1076 (1100)
T KOG4271|consen 1073 TLLM 1076 (1100)
T ss_pred chHH
Confidence 8776
No 54
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.72 E-value=1.8e-17 Score=170.42 Aligned_cols=163 Identities=21% Similarity=0.273 Sum_probs=137.8
Q ss_pred cccccchHHHhhhC-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCccC--C--CCCCcccchhhH
Q 005588 164 LVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--S--ADEDAHVIGDCV 238 (689)
Q Consensus 164 ~vFG~pL~~ll~~~-~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~~~--~--~~~Dvh~VAslL 238 (689)
.+||.+|+.++++. ..-|+++.+|+..|+++|++.-|+|+++|++.+-+-|+..|+...-.+ - ..-|.++|++++
T Consensus 183 gvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~~ 262 (442)
T KOG1452|consen 183 GVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGDS 262 (442)
T ss_pred cccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeeccc
Confidence 49999999999874 568999999999999999999999999999999999999998864222 2 235889999999
Q ss_pred HHHhhhCCCCCCChhhHHHHHHHHhc---CCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchh
Q 005588 239 KHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (689)
Q Consensus 239 K~fLReLPePLlp~~ly~~~i~~~~~---~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLA 315 (689)
|.||||||+|||+...|+..++++.. .+.+-....+-. |+.-||..++..|..++.||..|..++..|+||+..||
T Consensus 263 kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~-iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~Ls 341 (442)
T KOG1452|consen 263 KDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLA-IIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRLS 341 (442)
T ss_pred HhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHH-HHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHHH
Confidence 99999999999999999888877542 222333334444 34589999999999999999999999999999999999
Q ss_pred hhhcccccCCCC
Q 005588 316 ACMAPLLLRPLL 327 (689)
Q Consensus 316 ivfaP~Llr~~~ 327 (689)
.||||.||....
T Consensus 342 ~i~~P~L~~~~~ 353 (442)
T KOG1452|consen 342 LIFAPLLFFCLD 353 (442)
T ss_pred HHhhhhHHHhhc
Confidence 999999987653
No 55
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.71 E-value=7.6e-17 Score=144.70 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=71.9
Q ss_pred eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-----CCcceEEE
Q 005588 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-----DKKLLTVL 93 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~-----~kk~~FvI 93 (689)
|+|+|||+ |+|+..++|++|||||+++.|+||+++.+.. +.+.|+|..+....... .++++|.|
T Consensus 2 v~k~G~L~--Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~---------~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I 70 (100)
T cd01233 2 VSKKGYLN--FPEETNSGWTRRFVVVRRPYLHIYRSDKDPV---------ERGVINLSTARVEHSEDQAAMVKGPNTFAV 70 (100)
T ss_pred cceeEEEE--eeCCCCCCcEEEEEEEECCEEEEEccCCCcc---------EeeEEEecccEEEEccchhhhcCCCcEEEE
Confidence 78999665 8888889999999999999999999987755 45556666432221111 24577877
Q ss_pred EeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 94 FPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
.+ +.|+|+|+|+|++|+.+||.+|+..+
T Consensus 71 ~t---~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 71 CT---KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EC---CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 54 47999999999999999999998765
No 56
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.68 E-value=2.7e-16 Score=158.52 Aligned_cols=185 Identities=16% Similarity=0.200 Sum_probs=143.6
Q ss_pred cccccchHHHhhh-CCCCcHHHHHHH--HHHHhcCCCc--CCeeecCCCHHHHHHHHHHhhcCCc--cCCCCCCcc----
Q 005588 164 LVVGRPILLALED-IDGGPSFLEKAL--RFLEKFGTKV--EGILRQAADVEEVDRRVQEYEQGKT--EFSADEDAH---- 232 (689)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~iL~~~i--~~Le~~Gl~~--EGIFR~sG~~~~v~~L~~~ld~g~~--~~~~~~Dvh---- 232 (689)
++||+|+.+-+.+ ....|..+.... +++..+.++. -|+||+++-..-+...++.++.-.. ........+
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 4899998655544 444677776555 5555554444 6999999988889899888876421 111111112
Q ss_pred -------cchhhHHHHhhhCCCCCCChhhHHHHHHHHh---cCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhc
Q 005588 233 -------VIGDCVKHVLRELPSSPVPASCCTALLEAYK---IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS 302 (689)
Q Consensus 233 -------~VAslLK~fLReLPePLlp~~ly~~~i~~~~---~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~ 302 (689)
+||.+++.||++||+||+|..+|+.|+.++. ....+..+++++.+++ .||++||..|+.|+.||+.|+.
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~ 178 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK 178 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999998888876 3447899999998876 9999999999999999999999
Q ss_pred cc-------CCCCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 005588 303 HA-------HENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (689)
Q Consensus 303 ~s-------~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~ 375 (689)
+. ..|+| |++..|+|++++++. +. ..++..+|.|||+|+..||.-+
T Consensus 179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~-----l~-------------------~~~~~~LV~Fmmd~~~~ifkvP 231 (235)
T cd04405 179 NDMPRLHKEIENRM---LVKQTFSRAILCSKD-----LD-------------------EGLADLLVLFLMDHHQDIFKVP 231 (235)
T ss_pred cCccccccccchHH---HHHHHhhhHhcCccc-----cC-------------------HHHHHHHHHHHHHcchhhhcCC
Confidence 94 25777 999999999999872 11 1235689999999999999865
Q ss_pred C
Q 005588 376 S 376 (689)
Q Consensus 376 ~ 376 (689)
.
T Consensus 232 ~ 232 (235)
T cd04405 232 G 232 (235)
T ss_pred c
Confidence 4
No 57
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.68 E-value=2.3e-16 Score=142.43 Aligned_cols=91 Identities=29% Similarity=0.472 Sum_probs=67.6
Q ss_pred EEEeeeeeecCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc---eee------ccCCcce
Q 005588 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS---VVV------REDKKLL 90 (689)
Q Consensus 21 KeG~L~l~KkG~~-~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~s---v~~------~~~kk~~ 90 (689)
|+||| .|+|+. .++|++|||||+++.|+||+++.+..|. |.|+|..+.. |.. .....++
T Consensus 1 KeG~L--~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~---------G~I~L~~~~~~~~v~~~~~~~~~~~~~~~ 69 (103)
T cd01251 1 KEGFM--EKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAK---------GEVFLGSQEDGYEVREGLPPGTQGNHWYG 69 (103)
T ss_pred CceeE--EecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcC---------cEEEeeccccceeEeccCCccccccccce
Confidence 68955 588875 6999999999999999999998876643 3444443221 110 1122236
Q ss_pred EEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 91 FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
|.|.. ++|+|+|+|+|++|+.+||+||+.++.
T Consensus 70 F~i~t---~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 70 VTLVT---PERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEEEe---CCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 76654 389999999999999999999999985
No 58
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.66 E-value=3.8e-16 Score=139.88 Aligned_cols=91 Identities=27% Similarity=0.402 Sum_probs=73.8
Q ss_pred EEEeeeeeecCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC------CcceE
Q 005588 21 KSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLLT 91 (689)
Q Consensus 21 KeG~L~l~KkG~---~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~------kk~~F 91 (689)
.+| |+.|+|+ .+|+|++|||+|+++.|+|||+...+.| ..+.|+|+.+.+|....+ +++||
T Consensus 2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~--------~~g~IdL~~~~sVk~~~~~~~~~~~~~~F 71 (101)
T cd01264 2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDP--------DDCSIDLSKIRSVKAVAKKRRDRSLPKAF 71 (101)
T ss_pred cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCC--------CCceEEcccceEEeeccccccccccCcEE
Confidence 479 7778888 7899999999999999999998866542 236688888888765432 23788
Q ss_pred EEEeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 92 vI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
.|.. +.|+|||+|+|++++++||++|+.|+
T Consensus 72 ei~t---p~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 72 EIFT---ADKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEc---CCceEEEEeCCHHHHHHHHHHHHhhC
Confidence 8865 37999999999999999999998764
No 59
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.63 E-value=1.5e-15 Score=134.85 Aligned_cols=92 Identities=27% Similarity=0.370 Sum_probs=68.3
Q ss_pred EEEeeeeeec-CC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEeCC
Q 005588 21 KSGPLFISSK-GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG 97 (689)
Q Consensus 21 KeG~L~l~Kk-G~-~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-~~~kk~~FvI~~~~ 97 (689)
++|||+++.+ ++ ..+.|++|||||+++.|+||+++.+..+ .+.|+|..+..... ...++++|.|..
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~---------~~~I~L~~~~v~~~~~~~k~~~F~I~~-- 70 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKA---------EGLIFLSGFTIESAKEVKKKYAFKVCH-- 70 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCcc---------ceEEEccCCEEEEchhcCCceEEEECC--
Confidence 6898885533 22 4679999999999999999999887653 34455555433222 244667788763
Q ss_pred CCCcEEEEEecChHHHHHHHHHHHHH
Q 005588 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 98 ~~~rty~fqAdSeeE~~eWi~AL~~a 123 (689)
++.++|+|+|+|++++++||.+|+.|
T Consensus 71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 34599999999999999999999864
No 60
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.62 E-value=2.2e-15 Score=134.07 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=67.4
Q ss_pred EEeeeeeecCC--CCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCC
Q 005588 22 SGPLFISSKGI--GWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (689)
Q Consensus 22 eG~L~l~KkG~--~~k~WkKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~ 97 (689)
+|||+ |.|+ .+++|++|||||++ +.|+||+++.+.. ++|.|+|..+..+.....+++.|.|.+
T Consensus 2 ~GyL~--K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~---------p~G~I~L~~~~~~~~~~~~~~~F~i~t-- 68 (95)
T cd01265 2 CGYLH--KIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK---------PLGRVDLSGAAFTYDPREEKGRFEIHS-- 68 (95)
T ss_pred cccEE--EecCCCCCcCceeEEEEEcCCCcEEEEECCCCccc---------ccceEECCccEEEcCCCCCCCEEEEEc--
Confidence 59666 5543 48999999999984 5899999988765 566777777544333333456676654
Q ss_pred CCCcEEEEEecChHHHHHHHHHHHHH
Q 005588 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 98 ~~~rty~fqAdSeeE~~eWi~AL~~a 123 (689)
++|+|+|+|+|+++|++||.+|+.+
T Consensus 69 -~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 -NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 4799999999999999999999875
No 61
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.62 E-value=1.9e-15 Score=137.09 Aligned_cols=94 Identities=23% Similarity=0.251 Sum_probs=68.3
Q ss_pred EEEEeeeeeecC---CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---c------CC
Q 005588 20 FKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---E------DK 87 (689)
Q Consensus 20 ~KeG~L~l~KkG---~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---~------~k 87 (689)
+|+||||++.+| .++++|++|||||++++|+||+++.+... .+.|.|+|..+..+... . .+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~-------~~kG~I~L~~~~~ve~~~~~~~~~~~~~~ 73 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRG-------SKKGSIDLSKIKCVETVKPEKNPPIPERF 73 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccccc-------CcceeEECCcceEEEEecCCcCccccccc
Confidence 589988855333 23569999999999999999999765311 14556777665544321 1 23
Q ss_pred cceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHH
Q 005588 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 88 k~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~a 123 (689)
+++|.|.+ ..++|||+|+|++|+++||.||+++
T Consensus 74 ~~~F~i~t---~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 74 KYPFQVVH---DEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred CccEEEEe---CCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 56787765 3689999999999999999999864
No 62
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.61 E-value=5.2e-15 Score=138.03 Aligned_cols=99 Identities=27% Similarity=0.491 Sum_probs=74.2
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEeCCC
Q 005588 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDGR 98 (689)
Q Consensus 20 ~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-~~~kk~~FvI~~~~~ 98 (689)
.|+|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.+.|+|..+..... ...+++||.|.....
T Consensus 1 ~k~G~L~--K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~---------~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~ 69 (125)
T cd01252 1 DREGWLL--KQGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENVSIREVEDPSKPFCFELFSPSD 69 (125)
T ss_pred CcEEEEE--EeCCCCCCeEeEEEEEECCEEEEEcCCCCCC---------ceEEEECCCcEEEEcccCCCCeeEEEECCcc
Confidence 3789666 8887889999999999999999999987655 455566665433222 234667776654221
Q ss_pred ------------------CCcEEEEEecChHHHHHHHHHHHHHHhhCCc
Q 005588 99 ------------------DGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (689)
Q Consensus 99 ------------------~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~ 129 (689)
..++|+|+|+|++|+.+||+||+.++...|.
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~~ 118 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNPF 118 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCch
Confidence 2378999999999999999999999975543
No 63
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.60 E-value=3.9e-15 Score=132.87 Aligned_cols=90 Identities=27% Similarity=0.490 Sum_probs=67.2
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---------cCCcc
Q 005588 21 KSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---------EDKKL 89 (689)
Q Consensus 21 KeG~L~l~KkG~~~k~WkKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---------~~kk~ 89 (689)
.+|||+ |+|...++|++|||||++ +.|+||+++.+..| .+.|+|..+..+... ....+
T Consensus 1 ~~G~L~--K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~---------~g~I~L~~~~~v~~~~~~~~~~~~~~~~~ 69 (101)
T cd01235 1 CEGYLY--KRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAE---------KGCIDLAEVKSVNLAQPGMGAPKHTSRKG 69 (101)
T ss_pred CeEEEE--EcCCCCCCccceEEEEECCCCEEEEecCCCCCcc---------ceEEEcceeEEEeecCCCCCCCCCCCCce
Confidence 479555 888889999999999994 49999999877663 344555554443221 12345
Q ss_pred eEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 90 ~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
+|.+.. +.|+|+|+|++++++.+||.+|+.+|
T Consensus 70 ~f~i~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 70 FFDLKT---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEEEe---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 566544 47999999999999999999999874
No 64
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.57 E-value=1.2e-14 Score=128.47 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=69.1
Q ss_pred EEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCc
Q 005588 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGR 101 (689)
Q Consensus 22 eG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~r 101 (689)
+|| +.|+|...++|++|||||+++.|.||+++.+..+. +.|.|+|..+..+.. ..++..|.|... .++
T Consensus 2 ~G~--L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~-------~~G~I~L~~~~i~~~-~~~~~~F~i~~~--~~r 69 (91)
T cd01247 2 NGV--LSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHG-------CRGSIFLKKAIIAAH-EFDENRFDISVN--ENV 69 (91)
T ss_pred ceE--EEEeccccCCCceEEEEEECCEEEEEecCccCcCC-------CcEEEECcccEEEcC-CCCCCEEEEEeC--CCe
Confidence 694 45999999999999999999999999998764321 456677777544332 334567777542 359
Q ss_pred EEEEEecChHHHHHHHHHHHH
Q 005588 102 AFTLKAETSEDLYEWKTALEL 122 (689)
Q Consensus 102 ty~fqAdSeeE~~eWi~AL~~ 122 (689)
+|+|.|++++|+++||.||++
T Consensus 70 ~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 70 VWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEEEeCCHHHHHHHHHHHhh
Confidence 999999999999999999985
No 65
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.56 E-value=1.4e-14 Score=144.51 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhcCCCcCCe---eecCCCHHHHHHHHH-HhhcCC--ccC-------CCCCCcccchhhHHHHhhhCCCC
Q 005588 182 SFLEKALRFLEKFGTKVEGI---LRQAADVEEVDRRVQ-EYEQGK--TEF-------SADEDAHVIGDCVKHVLRELPSS 248 (689)
Q Consensus 182 ~iL~~~i~~Le~~Gl~~EGI---FR~sG~~~~v~~L~~-~ld~g~--~~~-------~~~~Dvh~VAslLK~fLReLPeP 248 (689)
.+|..|...|+.+|+++++| ||.+++...++.+.. .|+.+. ... ....|||+|+++||.|||.||.+
T Consensus 8 ~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~ 87 (198)
T cd04401 8 GLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGS 87 (198)
T ss_pred HHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCC
Confidence 47888999999999999999 999999999998855 455442 111 23479999999999999999999
Q ss_pred CCCh-hhHHHHHHHHhcCCHHHHHHHHHHHHhccC-ChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCC
Q 005588 249 PVPA-SCCTALLEAYKIDRKEARISAMRSAILETF-PEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (689)
Q Consensus 249 Llp~-~ly~~~i~~~~~~~~e~ri~~l~~lIl~~L-P~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~ 326 (689)
+|+. +.|..|...-+..+ .-..+++.+|-..+ |+.|..++..++.+|..|+.|+..|+|+..||+.+|||.+|..+
T Consensus 88 ~v~~~~~Y~~F~~~E~~~~--~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~~ 165 (198)
T cd04401 88 KVIWWEVYEEFKARERRSN--YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGKP 165 (198)
T ss_pred ccCCHHHHHHHHHHHHhcC--CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCCC
Confidence 9999 99999998643322 22337777664333 78899999999999999999999999999999999999999877
Q ss_pred C
Q 005588 327 L 327 (689)
Q Consensus 327 ~ 327 (689)
.
T Consensus 166 ~ 166 (198)
T cd04401 166 T 166 (198)
T ss_pred C
Confidence 4
No 66
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.54 E-value=3.6e-14 Score=127.94 Aligned_cols=97 Identities=22% Similarity=0.316 Sum_probs=70.2
Q ss_pred eEEEEeeeeeecCCCCCCcEEEEEEEe-CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCC
Q 005588 19 VFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WkKRWFVL~-~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~ 97 (689)
|+|+||| .|+|+..+.|++|||+|+ ++.|+||++++..... ..++++++.+..|..+.....+.+.|.|....
T Consensus 1 v~k~G~L--~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 1 VVKEGWL--HKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CcEEEEE--EeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence 5799955 489999999999999999 7889999887643321 23467777776655444444555678776211
Q ss_pred ---CCCcEEEEEecChHHHHHHHHHHHHH
Q 005588 98 ---RDGRAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 98 ---~~~rty~fqAdSeeE~~eWi~AL~~a 123 (689)
...| +|+|+|++|+++||.||+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 2234 45799999999999999876
No 67
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.54 E-value=2.1e-14 Score=129.59 Aligned_cols=90 Identities=30% Similarity=0.531 Sum_probs=66.3
Q ss_pred EEEeeeeeecC-------CCCCCcEEEEEEEe-CCeEEEEcCCC-CCCCCCCceeeeeeCcEEcCCCcceeecc---CCc
Q 005588 21 KSGPLFISSKG-------IGWKSWKKRWFILT-RTSLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKK 88 (689)
Q Consensus 21 KeG~L~l~KkG-------~~~k~WkKRWFVL~-~~~L~YYKd~~-~~~p~~~~e~~l~L~~I~L~~~~sv~~~~---~kk 88 (689)
++|||++.--| ..+|+||||||||+ ++.|+||++.. ... +.|.|+|+.|..|.... .+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~---------p~G~IdL~~~~~V~~~~~~~~~~ 71 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTL---------PQGTIDMNQCTDVVDAEARTGQK 71 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcc---------cceEEEccceEEEeecccccCCc
Confidence 47988755333 24799999999998 56888887663 444 45668888877765432 234
Q ss_pred ceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHH
Q 005588 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (689)
Q Consensus 89 ~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ 122 (689)
++|.|.+ +.|+|||.|+|++|+++|+.+|..
T Consensus 72 ~~f~I~t---p~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 72 FSICILT---PDKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred cEEEEEC---CCceEEEEeCCHHHHHHHHHHHHh
Confidence 6777754 389999999999999999999863
No 68
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.50 E-value=8.8e-14 Score=126.58 Aligned_cols=88 Identities=19% Similarity=0.145 Sum_probs=63.3
Q ss_pred EEeeeeeecCC----CCCCcEEEEEEEeCCe-------EEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----cc
Q 005588 22 SGPLFISSKGI----GWKSWKKRWFILTRTS-------LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RE 85 (689)
Q Consensus 22 eG~L~l~KkG~----~~k~WkKRWFVL~~~~-------L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-----~~ 85 (689)
+|||. |+|. ..++|++|||||+++. |.||+++.... +.+.|+|..+..+.. ..
T Consensus 2 eGwL~--K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k---------~~g~I~L~~~~~v~~~~~~~~~ 70 (108)
T cd01266 2 EGWLK--KSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFK---------LEFVIDLESCSQVDPGLLCTAG 70 (108)
T ss_pred ceeee--eCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCc---------cceEEECCccEEEccccccccc
Confidence 79555 6665 3469999999999876 59999987765 445566666444321 11
Q ss_pred --CCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHH
Q 005588 86 --DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 86 --~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~a 123 (689)
...+.|.+.. +.|+|+|.|+|++||++||.+|+++
T Consensus 71 ~~~~~~~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 71 NCIFGYGFDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred CcccceEEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 1224465543 4799999999999999999999864
No 69
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.50 E-value=9.7e-14 Score=124.79 Aligned_cols=91 Identities=29% Similarity=0.399 Sum_probs=68.6
Q ss_pred eEEEEeeeeeecCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--Ccce
Q 005588 19 VFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLL 90 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~------~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~--kk~~ 90 (689)
|+|+|||. |+ +.|+||||||++. .|.||++++.....+ ..+.+.|+|..|..+....+ ++++
T Consensus 2 v~k~GyL~--K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~----~~p~~vI~L~~c~~v~~~~d~k~~~~ 71 (101)
T cd01257 2 VRKSGYLR--KQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKG----SAPKRVIPLESCFNINKRADAKHRHL 71 (101)
T ss_pred ccEEEEEe--Ee----cCcEeEEEEEecCCCCCCceEEEECChhhccccC----CCceEEEEccceEEEeeccccccCeE
Confidence 78999665 54 6899999999987 799999987532111 11567788888877654322 3467
Q ss_pred EEEEeCCCCCcEEEEEecChHHHHHHHHHHHH
Q 005588 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (689)
Q Consensus 91 FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ 122 (689)
|.|.+ +.++|+|.|+|++|+++|+.+|..
T Consensus 72 f~i~t---~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 72 IALYT---RDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence 77754 368999999999999999999864
No 70
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.49 E-value=1.6e-13 Score=119.29 Aligned_cols=91 Identities=27% Similarity=0.419 Sum_probs=66.7
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCC
Q 005588 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (689)
Q Consensus 21 KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~ 100 (689)
++|||+ |++...+.|++|||+|+++.|+||+++..... .+.+.|.|..+. +......+++|.|.. +++
T Consensus 1 ~~G~L~--k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~-------~~~~~i~l~~~~-~~~~~~~~~~F~i~~--~~~ 68 (91)
T cd01246 1 VEGWLL--KWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRG-------KPRGTILLSGAV-ISEDDSDDKCFTIDT--GGD 68 (91)
T ss_pred CeEEEE--EecccCCCceeeEEEEECCEEEEEecCccCCC-------CceEEEEeceEE-EEECCCCCcEEEEEc--CCC
Confidence 479665 76766789999999999999999999876510 033445555543 222233456777754 345
Q ss_pred cEEEEEecChHHHHHHHHHHHHH
Q 005588 101 RAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 101 rty~fqAdSeeE~~eWi~AL~~a 123 (689)
++|+|+|+|.+|+.+|+.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 71
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.47 E-value=1.8e-13 Score=119.82 Aligned_cols=90 Identities=22% Similarity=0.445 Sum_probs=63.1
Q ss_pred EEEeeeeeecCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc--CCcceEEEEeCC
Q 005588 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--DKKLLTVLFPDG 97 (689)
Q Consensus 21 KeG~L~l~KkG~~-~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~--~kk~~FvI~~~~ 97 (689)
|+|||+ |++.. .+.|++|||+|+++.|+||+++..... . +.+.|++..+....... .++++|.|...
T Consensus 1 k~G~L~--kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~~--~-----~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~- 70 (94)
T cd01250 1 KQGYLY--KRSSKSNKEWKKRWFVLKNGQLTYHHRLKDYDN--A-----HVKEIDLRRCTVRHNGKQPDRRFCFEVISP- 70 (94)
T ss_pred CcceEE--EECCCcCCCceEEEEEEeCCeEEEEcCCccccc--c-----cceEEeccceEEecCccccCCceEEEEEcC-
Confidence 589776 55433 788999999999999999999875311 1 12234444322211112 25678888652
Q ss_pred CCCcEEEEEecChHHHHHHHHHHHH
Q 005588 98 RDGRAFTLKAETSEDLYEWKTALEL 122 (689)
Q Consensus 98 ~~~rty~fqAdSeeE~~eWi~AL~~ 122 (689)
.++|+|+|+|.+++.+|+.||+.
T Consensus 71 --~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 71 --TKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred --CcEEEEECCCHHHHHHHHHHHhc
Confidence 49999999999999999999975
No 72
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.43 E-value=1e-13 Score=121.46 Aligned_cols=65 Identities=51% Similarity=0.622 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccc-CCCccCCccccchhHHHHHH
Q 005588 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKVCTDHKRFVSF 678 (689)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~-~~~~~~d~~~~~~lee~~~~ 678 (689)
|||+++|++|.+|||||.+||+|||.|+++|.|||.||+.+.|.+ ++|.+|+.++++.|+|||..
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~l 66 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALL 66 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999888 78899999999999999963
No 73
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.41 E-value=6.2e-13 Score=118.76 Aligned_cols=88 Identities=17% Similarity=0.259 Sum_probs=67.0
Q ss_pred EEeeeeeecCCC-CCCcEEEEEEEeC----CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc---CCcceEEE
Q 005588 22 SGPLFISSKGIG-WKSWKKRWFILTR----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKKLLTVL 93 (689)
Q Consensus 22 eG~L~l~KkG~~-~k~WkKRWFVL~~----~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~---~kk~~FvI 93 (689)
.|||. |+|+. .|.||+|||+|.+ +.|+||++..++. +++.|++..+....+.+ .+++||.+
T Consensus 2 ~G~l~--K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~---------p~gli~l~~~~V~~v~ds~~~r~~cFel 70 (98)
T cd01245 2 KGNLL--KRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK---------PIGLIDLSDAYLYPVHDSLFGRPNCFQI 70 (98)
T ss_pred CCccc--cCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC---------ccceeeccccEEEEccccccCCCeEEEE
Confidence 48554 88877 9999999999987 8999999998877 45557777763222222 56689988
Q ss_pred EeCCCCCcEEEEEecChHHHHHHHHHHHH
Q 005588 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (689)
Q Consensus 94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~ 122 (689)
..... ..+|+++|++ +|+++||.+|++
T Consensus 71 ~~~~~-~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 71 VERAL-PTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ecCCC-CeEEEEeCCH-HHHHHHHHHHhc
Confidence 75211 2699999999 999999999985
No 74
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.41 E-value=1e-12 Score=121.93 Aligned_cols=98 Identities=21% Similarity=0.250 Sum_probs=70.1
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee------ccCCcceEEE
Q 005588 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------REDKKLLTVL 93 (689)
Q Consensus 20 ~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~------~~~kk~~FvI 93 (689)
...|||.+....++.++|++|||||+|+.|+||+.+.+.. .. .+++.|+|..|..... .-.+++.|.|
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-~~-----~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i 75 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEK-RK-----GPTGLIDLSTCTSSEGASAVRDICARPNTFHL 75 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccc-cC-----CceEEEEhhhCcccccccCChhhcCCCCeEEE
Confidence 4579998766666799999999999999999999877632 11 2677788877666433 2335566666
Q ss_pred EeCCCC----------------Cc-EEEEEecChHHHHHHHHHHHHH
Q 005588 94 FPDGRD----------------GR-AFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 94 ~~~~~~----------------~r-ty~fqAdSeeE~~eWi~AL~~a 123 (689)
....+. .+ -|+|.|+|.+|+++|+.||+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 76 DVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred EEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 431111 12 2679999999999999999853
No 75
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.40 E-value=1.2e-12 Score=117.10 Aligned_cols=77 Identities=22% Similarity=0.233 Sum_probs=58.5
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCcceEEEEeCCCCCcEEEEEecC
Q 005588 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLFPDGRDGRAFTLKAET 109 (689)
Q Consensus 34 ~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~----~kk~~FvI~~~~~~~rty~fqAdS 109 (689)
.++||+|||+|+++.|+||+++.. . +.+.|+|.....|.... .+.++|.|.. +.++|||+|+|
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~~-~---------~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt---~~r~~yi~a~s 84 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQC-K---------KSALIKLAAIKGTEPLSDKSFVNVDIITIVC---EDDTMQLQFEA 84 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCCC-c---------eeeeEEccceEEEEEcCCcccCCCceEEEEe---CCCeEEEECCC
Confidence 478999999999999999997653 2 45667777766543322 2235666644 26899999999
Q ss_pred hHHHHHHHHHHHHH
Q 005588 110 SEDLYEWKTALELA 123 (689)
Q Consensus 110 eeE~~eWi~AL~~a 123 (689)
+.|+++||.||+++
T Consensus 85 ~~E~~~Wi~al~k~ 98 (98)
T cd01244 85 PVEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999863
No 76
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.39 E-value=4.4e-12 Score=111.06 Aligned_cols=101 Identities=23% Similarity=0.420 Sum_probs=69.9
Q ss_pred eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee--eccCCcceEEEEeC
Q 005588 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLTVLFPD 96 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~--~~~~kk~~FvI~~~ 96 (689)
++++|||+ +++...+.|++|||||+++.|+||+++.... ...+...+++..+.+....... .....+++|.|...
T Consensus 1 ~~~~G~L~--~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 1 CIKEGWLL--KKSSSRKKWKKRYFVLRDSYLLYYKSSKDKS-DSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEE--EEESSSSSEEEEEEEEETTEEEEESSTTTTT-ESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred CEEEEEEE--EECCCCCCeEEEEEEEECCEEEEEecCcccc-ceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence 58999777 5556678999999999999999999987411 1122233344443333221110 11245578888763
Q ss_pred CCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 97 GRDGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 97 ~~~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
.+++|+|+|+|++++..|+.+|+.++
T Consensus 78 --~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 --NGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp --TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 34699999999999999999999886
No 77
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.30 E-value=1.6e-11 Score=113.23 Aligned_cols=101 Identities=21% Similarity=0.256 Sum_probs=68.4
Q ss_pred EEEeeeee-------ecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcce
Q 005588 21 KSGPLFIS-------SKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLL 90 (689)
Q Consensus 21 KeG~L~l~-------KkG-~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~--~~kk~~ 90 (689)
|+|+|..+ ||. .+.+.|+++||||+|+.|++|||+...... . ...-....|.|..+...... ..+++.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~-~-~~~~~~~~Isi~~a~~~ia~dy~Kr~~V 79 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKS-L-SETELKNAISIHHALATRASDYSKKPHV 79 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccc-c-ccccccceEEeccceeEeeccccCCCcE
Confidence 68877744 111 125789999999999999999998642211 0 00001234666665532222 334455
Q ss_pred EEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 91 FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
|.|. .++++.|+|||.+.+||+.||.+|+.+++
T Consensus 80 F~L~--~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 80 FRLR--TADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred EEEE--cCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5554 46789999999999999999999999875
No 78
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.29 E-value=1.1e-11 Score=111.65 Aligned_cols=94 Identities=29% Similarity=0.411 Sum_probs=62.4
Q ss_pred EEeeeeee------cCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceEEE
Q 005588 22 SGPLFISS------KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTVL 93 (689)
Q Consensus 22 eG~L~l~K------kG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~--~~kk~~FvI 93 (689)
+|+|..+. +....+.|++|||||+++.|+||+++........+.. .|++..+...... ..++++|.|
T Consensus 2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~-----~i~l~~~~i~~~~~~~k~~~~F~l 76 (104)
T cd01253 2 EGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEP-----PVDLTGAQCEVASDYTKKKHVFRL 76 (104)
T ss_pred CceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCC-----cEeccCCEEEecCCcccCceEEEE
Confidence 57666331 1224788999999999999999998764421111111 2344322221111 244577777
Q ss_pred EeCCCCCcEEEEEecChHHHHHHHHHHHH
Q 005588 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (689)
Q Consensus 94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~ 122 (689)
.. +++++|+|+|+++++|..|+.+|+.
T Consensus 77 ~~--~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 77 RL--PDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred Ee--cCCCEEEEECCCHHHHHHHHHHHhc
Confidence 63 4689999999999999999999975
No 79
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.3e-11 Score=125.73 Aligned_cols=101 Identities=31% Similarity=0.486 Sum_probs=74.6
Q ss_pred eEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-cCCcceEEEEe-
Q 005588 19 VFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVLFP- 95 (689)
Q Consensus 19 V~KeG~L~l~KkG~-~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-~~kk~~FvI~~- 95 (689)
..++|||+ |.|+ +.+.||+|||+|+.++||||.--.+..|+| .|++.+...-.+. ..+++||.+..
T Consensus 260 pdREGWLl--Klgg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrG---------IIpLeNlsir~VedP~kP~cfEly~p 328 (395)
T KOG0930|consen 260 PDREGWLL--KLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRG---------IIPLENLSIREVEDPKKPNCFELYIP 328 (395)
T ss_pred ccccceee--eecCCcccchhheeEEeecceeeeeeeccCCCCCc---------ceeccccceeeccCCCCCCeEEEecC
Confidence 46789777 4444 789999999999999999998877777544 4555554332222 45668887753
Q ss_pred CC-----------CCCc-------EEEEEecChHHHHHHHHHHHHHHhhCCcc
Q 005588 96 DG-----------RDGR-------AFTLKAETSEDLYEWKTALELALAQAPSA 130 (689)
Q Consensus 96 ~~-----------~~~r-------ty~fqAdSeeE~~eWi~AL~~ai~~aP~~ 130 (689)
.. .+|| +|.++|.+.+|+.+||.+|+.+++..|-.
T Consensus 329 s~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pfy 381 (395)
T KOG0930|consen 329 SNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPFY 381 (395)
T ss_pred CCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcHH
Confidence 21 1232 79999999999999999999999876654
No 80
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.23 E-value=3.8e-11 Score=110.17 Aligned_cols=97 Identities=32% Similarity=0.526 Sum_probs=49.7
Q ss_pred EEEeeeeeecCCC-CCCcEEEEEEEe-CCeEEEEcCCCCCCCCC--C--ceeeeeeCcEEcCCCcc-ee--------ecc
Q 005588 21 KSGPLFISSKGIG-WKSWKKRWFILT-RTSLVFFKNDPSALPQR--G--GEVNLTLGGIDLNNSGS-VV--------VRE 85 (689)
Q Consensus 21 KeG~L~l~KkG~~-~k~WkKRWFVL~-~~~L~YYKd~~~~~p~~--~--~e~~l~L~~I~L~~~~s-v~--------~~~ 85 (689)
|+|||| |++.. .+.|++|||+|. ++.|.|||.+....... + ....+..+.+....... .. ...
T Consensus 1 k~G~l~--K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLY--KWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEE--E--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEE--EecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 689776 88876 899999999999 99999999933221000 0 00000001111111000 00 001
Q ss_pred CCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHH
Q 005588 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 86 ~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~a 123 (689)
.. ..+.+.+ +.++|+|.|++.+|+.+|+.||+.|
T Consensus 79 ~~-~~~~i~T---~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HL-KVFSIFT---PTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SS-EEEEEE----SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CC-CCcEEEC---CCcEEEEEECCHHHHHHHHHHHHhC
Confidence 11 2233322 3799999999999999999999875
No 81
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.20 E-value=2.6e-11 Score=129.59 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=146.3
Q ss_pred cccccchHHHhhh-----CCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCC----------------
Q 005588 164 LVVGRPILLALED-----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---------------- 222 (689)
Q Consensus 164 ~vFG~pL~~ll~~-----~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~---------------- 222 (689)
++-|.++...+.. ....|.++...+.+.+.+|+.++||+|.++..++.++++..-..|+
T Consensus 50 ~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~ 129 (514)
T KOG4370|consen 50 RVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKR 129 (514)
T ss_pred hhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHH
Confidence 3555555333321 2347899999999999999999999999988866655554332211
Q ss_pred -------------------------ccCCCCCCcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHH
Q 005588 223 -------------------------TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSA 277 (689)
Q Consensus 223 -------------------------~~~~~~~Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~l 277 (689)
......+.|.+||+|||.|||+||+||++.++...|..++.......+.+.++.+
T Consensus 130 ~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~l 209 (514)
T KOG4370|consen 130 FLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFL 209 (514)
T ss_pred hhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHH
Confidence 0011245788999999999999999999999999999999888888888999986
Q ss_pred HhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccccCCCCCchHHHHHHHHHHHHH
Q 005588 278 ILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNA 357 (689)
Q Consensus 278 Il~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~~~g~~~~~l~~~~~~~~~~ 357 (689)
+ ..||..||.++.||+-|+..|....-.|||++.||+|+..|++=-.
T Consensus 210 l-k~Lp~cNyll~swl~lH~d~vi~~e~~~Kln~q~i~i~lspt~q~s-------------------------------- 256 (514)
T KOG4370|consen 210 L-KILPKCNYLLYSWLNLHKDKVIEEEYCLKLNKQQIFINLSPTEQES-------------------------------- 256 (514)
T ss_pred H-HhccccchHHHHHHHHHHHHHHHHHHHhhcchhheeeecchHHHHH--------------------------------
Confidence 5 6999999999999999999999999999999999999988876432
Q ss_pred HHHHHHHHHhccccCCCCCccccc
Q 005588 358 QAIIATLLEEYENIFDDESLHRCS 381 (689)
Q Consensus 358 ~~iVe~LIen~~~IF~~~~~~~~~ 381 (689)
+.++..|.-|+..||++.-+..|.
T Consensus 257 ~r~l~al~~h~q~lf~~v~l~~~~ 280 (514)
T KOG4370|consen 257 KRGLQALGLHLQTLFEMVRLMVCF 280 (514)
T ss_pred HHHHHHHHHHHHHHHhhheeeeee
Confidence 245777788888889887654433
No 82
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.16 E-value=1.7e-10 Score=103.77 Aligned_cols=90 Identities=22% Similarity=0.403 Sum_probs=66.3
Q ss_pred cCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE-eCCCCCcEEEEEec
Q 005588 30 KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF-PDGRDGRAFTLKAE 108 (689)
Q Consensus 30 kG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~-~~~~~~rty~fqAd 108 (689)
+...+++||+|||+|+++.|+|||++.+.. +.+.+.+.+.++.+.....+ ..+++++.+. +...+.++|+|.|+
T Consensus 13 ~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~cd 87 (106)
T cd01237 13 KKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLRCD 87 (106)
T ss_pred chhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEECC
Confidence 344578899999999999999999987643 45555666667766654322 2345655554 32334489999999
Q ss_pred ChHHHHHHHHHHHHHH
Q 005588 109 TSEDLYEWKTALELAL 124 (689)
Q Consensus 109 SeeE~~eWi~AL~~ai 124 (689)
|++++.+||.|++.|.
T Consensus 88 sEeqya~Wmaa~rlas 103 (106)
T cd01237 88 NEKQYAKWMAACRLAS 103 (106)
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999999774
No 83
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.13 E-value=6.7e-11 Score=136.43 Aligned_cols=146 Identities=22% Similarity=0.287 Sum_probs=129.9
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCeee-cCCCHHHHHHHHHHhhcCCcc--CCCCCCcccchhhHHHHhhhCCCC-CCChhh
Q 005588 179 GGPSFLEKALRFLEKFGTKVEGILR-QAADVEEVDRRVQEYEQGKTE--FSADEDAHVIGDCVKHVLRELPSS-PVPASC 254 (689)
Q Consensus 179 ~VP~iL~~~i~~Le~~Gl~~EGIFR-~sG~~~~v~~L~~~ld~g~~~--~~~~~Dvh~VAslLK~fLReLPeP-Llp~~l 254 (689)
.||.++..|+.+++.+|+..+|||| +++....|..++.++.+|... ...+.+... |.++|.|+|.|.+| +|+++.
T Consensus 217 ~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~ 295 (640)
T KOG3565|consen 217 FIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFED 295 (640)
T ss_pred cccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcccc
Confidence 4999999999999999999999999 899999999999999998421 122334455 99999999999999 999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCCC
Q 005588 255 CTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (689)
Q Consensus 255 y~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~ 326 (689)
|..|+.+....+.-+.+..++.++. .+|..+..++.+|+.|+...++.+..|.|++.|+|+||||.++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 296 FGQPHDCAARDNLLSRALHVRKLLK-SLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred ccchhhhhhhcCchhhhhhhhhhhh-ccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 9999999888777777788888774 8999999999999999999999999999999999999999997654
No 84
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.12 E-value=3.6e-10 Score=98.94 Aligned_cols=86 Identities=27% Similarity=0.479 Sum_probs=61.6
Q ss_pred EeeeeeecCCCCCCcEEEEEEE--eCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCC
Q 005588 23 GPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (689)
Q Consensus 23 G~L~l~KkG~~~k~WkKRWFVL--~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~ 100 (689)
|||.+ |+....++|++||||| ..+.|.||+++.+.. .-|.|+|..+. +.. ..+...+.|.. ..
T Consensus 1 G~llK-krr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~---------~rGsi~v~~a~-is~-~~~~~~I~ids---g~ 65 (89)
T PF15409_consen 1 GWLLK-KRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK---------LRGSIDVSLAV-ISA-NKKSRRIDIDS---GD 65 (89)
T ss_pred Cccee-eccccCCCceeEEEEEEcCCcEEEEEecCCCCe---------eEeEEEccceE-EEe-cCCCCEEEEEc---CC
Confidence 66653 3344578999999999 889999999876542 33456666542 222 23444555543 36
Q ss_pred cEEEEEecChHHHHHHHHHHHHH
Q 005588 101 RAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 101 rty~fqAdSeeE~~eWi~AL~~a 123 (689)
.+|+|.|.++++.+.|+.||+.|
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 89999999999999999999875
No 85
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.11 E-value=5.1e-10 Score=100.77 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=69.0
Q ss_pred eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEeCC
Q 005588 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG 97 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-~~~kk~~FvI~~~~ 97 (689)
.+|+| |+.|.+...+.|+.|||.|-++.|.|++...... +.. ....+.|++........ ....++.|.|...
T Consensus 2 ~ikeG--~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~---~~~-y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~~- 74 (101)
T cd01219 2 LLKEG--SVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIG---GSK-FKVRARIDVSGMQVCEGDNLERPHSFLVSGK- 74 (101)
T ss_pred cccce--EEEEEecCCCCceeEEEEEeCCEEEEEEcccccC---CCc-EEEEEEEecccEEEEeCCCCCcCceEEEecC-
Confidence 57999 5558888788999999999999999998543211 111 11233455544322111 1235677888653
Q ss_pred CCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 98 ~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
.++|+|+|+|++|+.+||.||+.++.
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 59999999999999999999999985
No 86
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.11 E-value=3.6e-10 Score=105.06 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=57.7
Q ss_pred CcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--------------cCCcceEEEEeCCCCCc
Q 005588 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------------EDKKLLTVLFPDGRDGR 101 (689)
Q Consensus 36 ~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~--------------~~kk~~FvI~~~~~~~r 101 (689)
+|++|||+|++..|.||+++.++. +++.|.++....+... ..+++.|.|.. ..|
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~---------~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R 99 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQ---------ILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNR 99 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCc---------eeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCc
Confidence 699999999999999999988765 4444555443333221 24456677754 489
Q ss_pred EEEEEecChHHHHHHHHHHHHH
Q 005588 102 AFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 102 ty~fqAdSeeE~~eWi~AL~~a 123 (689)
+|.|.|+|+.++.+|+++|+.|
T Consensus 100 ~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 100 SLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EEEEEeCCHHHHHHHHHHHHhC
Confidence 9999999999999999999864
No 87
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.07 E-value=1e-09 Score=101.75 Aligned_cols=103 Identities=24% Similarity=0.399 Sum_probs=60.1
Q ss_pred EEEEeeeee-------ec-CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCC-----CceeeeeeCcEEcCCCcceeec--
Q 005588 20 FKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQR-----GGEVNLTLGGIDLNNSGSVVVR-- 84 (689)
Q Consensus 20 ~KeG~L~l~-------Kk-G~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~-----~~e~~l~L~~I~L~~~~sv~~~-- 84 (689)
.|+|||+.+ |+ +.+.++|+..|+||+|+.|++||+........ ..+..-+...|.|..+.+....
T Consensus 1 ~keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 1 YKEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp --EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred CceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 479988754 11 12467899999999999999999943211100 1111123445777766554333
Q ss_pred cCCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 85 ~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
.++++.|.+.+ .+|..|+|||.|.++|.+||++|+.+.
T Consensus 81 ~Kr~~VFrL~~--~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 TKRKNVFRLRT--ADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccCCeEEEEEe--CCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 33556777764 579999999999999999999999874
No 88
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.04 E-value=2.6e-09 Score=91.76 Aligned_cols=97 Identities=33% Similarity=0.512 Sum_probs=68.5
Q ss_pred eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCcceEEEE
Q 005588 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLF 94 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~----~kk~~FvI~ 94 (689)
++++|||+....+ ....|++|||+|.++.|.||++...... .. ....|+|..+....... ..+++|.+.
T Consensus 1 ~~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~~-----~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~ 73 (102)
T smart00233 1 VIKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-YK-----PKGSIDLSGITVREAPDPDSAKKPHCFEIK 73 (102)
T ss_pred CceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-CC-----CceEEECCcCEEEeCCCCccCCCceEEEEE
Confidence 3689977744432 4678999999999999999998865321 11 23446666553222222 245778776
Q ss_pred eCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 95 PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 95 ~~~~~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
.. ++..|+|+|+|..++..|+.+|+.++
T Consensus 74 ~~--~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 74 TA--DRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ec--CCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 53 33599999999999999999999875
No 89
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.84 E-value=3.6e-09 Score=111.07 Aligned_cols=108 Identities=17% Similarity=0.315 Sum_probs=85.1
Q ss_pred CCCCceEEEEeeeeeecCCCCCCcEEEEEEEe-CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 005588 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (689)
Q Consensus 14 ~~~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~-~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~Fv 92 (689)
.....|+|+| |+.|+|...++|+.|||+|. ++.|.-|+.++....+.. .+|..+.+..|..+.....++..|+
T Consensus 10 ~~~~~vvkEg--WlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p----~pLNnF~v~~cq~m~~erPrPntFi 83 (516)
T KOG0690|consen 10 MSQEDVVKEG--WLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTP----EPLNNFMVRDCQTMKTERPRPNTFI 83 (516)
T ss_pred cchhhhHHhh--hHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCCc----ccccchhhhhhhhhhccCCCCceEE
Confidence 4456799999 55599999999999999997 479999998766542222 3788888888888777777777777
Q ss_pred E-EeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588 93 L-FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (689)
Q Consensus 93 I-~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a 127 (689)
| +..++.-...+|++++++++++|+.||+.+....
T Consensus 84 iRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l 119 (516)
T KOG0690|consen 84 IRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRL 119 (516)
T ss_pred EEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence 7 3455556678899999999999999999887644
No 90
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.83 E-value=1.5e-08 Score=86.22 Aligned_cols=93 Identities=31% Similarity=0.538 Sum_probs=63.4
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--CcceEEEEeCCC
Q 005588 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLLTVLFPDGR 98 (689)
Q Consensus 21 KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~--kk~~FvI~~~~~ 98 (689)
++|||+....+. ...|++|||+|.++.|.+|+...... ... +.+.|++..+........ ..++|.|...
T Consensus 1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~-----~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~-- 71 (96)
T cd00821 1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK-SYK-----PKGSIPLSGAEVEESPDDSGRKNCFEIRTP-- 71 (96)
T ss_pred CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc-CCC-----CcceEEcCCCEEEECCCcCCCCcEEEEecC--
Confidence 468666433332 47899999999999999998876531 011 234455555322222222 4678888763
Q ss_pred CCcEEEEEecChHHHHHHHHHHHH
Q 005588 99 DGRAFTLKAETSEDLYEWKTALEL 122 (689)
Q Consensus 99 ~~rty~fqAdSeeE~~eWi~AL~~ 122 (689)
+++.|+|+|+|..++..|+.+|+.
T Consensus 72 ~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 72 DGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHhc
Confidence 249999999999999999999975
No 91
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.81 E-value=2.7e-08 Score=89.30 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=62.0
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeCC--eEE--EEcCCCCCCCCCCceeeeeeCcEEcCCCcc-eeeccCCcceEEEEe
Q 005588 21 KSGPLFISSKGIGWKSWKKRWFILTRT--SLV--FFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVREDKKLLTVLFP 95 (689)
Q Consensus 21 KeG~L~l~KkG~~~k~WkKRWFVL~~~--~L~--YYKd~~~~~p~~~~e~~l~L~~I~L~~~~s-v~~~~~kk~~FvI~~ 95 (689)
|+||||++.+++....|.++||...+. .+. -+...... +.++. + .....+.|..|.. .....++++||.|+.
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~-~~~g~-v-~~~e~~~l~sc~~r~~~~~dRRFCFei~~ 77 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKT-DMKGA-V-AQDETLTLKSCSRRKTESIDKRFCFDVEV 77 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEeccccccc-ccCcc-c-ccceEEeeeeccccccCCccceeeEeeee
Confidence 589999998877777899999999874 321 22222111 11111 0 0111233333332 123357899999977
Q ss_pred CCCCCcEEEEEecChHHHHHHHHHHH
Q 005588 96 DGRDGRAFTLKAETSEDLYEWKTALE 121 (689)
Q Consensus 96 ~~~~~rty~fqAdSeeE~~eWi~AL~ 121 (689)
..++ .+++|||+++.++..||.|+.
T Consensus 78 ~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 78 EEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred cCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 5444 479999999999999999985
No 92
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.80 E-value=2.4e-08 Score=87.78 Aligned_cols=99 Identities=32% Similarity=0.451 Sum_probs=71.8
Q ss_pred eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe-CC
Q 005588 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DG 97 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~-~~ 97 (689)
|++.|||-+..-|.....=|.|||||+..+|+||++..+..+++. ++|.++.+.....- --.+++||.+.. ..
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyi----lpLdnLk~Rdve~g--f~sk~~~FeLfnpd~ 74 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYM----LPLDGLKLRDIEGG--FMSRNHKFALFYPDG 74 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccce----eeccccEEEeeccc--ccCCCcEEEEEcCcc
Confidence 578898877766655555699999999999999999988875543 35666555543321 134668888863 21
Q ss_pred ----CCCcEEEEEecChHHHHHHHHHHHHH
Q 005588 98 ----RDGRAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 98 ----~~~rty~fqAdSeeE~~eWi~AL~~a 123 (689)
++-++.-|.|+|.++++.|...+-+|
T Consensus 75 rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 75 RNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 13467889999999999999887554
No 93
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.79 E-value=4.6e-08 Score=83.80 Aligned_cols=93 Identities=29% Similarity=0.482 Sum_probs=63.2
Q ss_pred EEeeeeeecCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc---CCcceEEEEeC
Q 005588 22 SGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKKLLTVLFPD 96 (689)
Q Consensus 22 eG~L~l~KkG~--~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~---~kk~~FvI~~~ 96 (689)
+|||.+..... ....|++|||+|.+..|.||+.+....... +.+++.... +.... ...++|.+...
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~--------~~~~l~~~~-v~~~~~~~~~~~~F~i~~~ 72 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP--------GSIPLSEIS-VEEDPDGSDDPNCFAIVTK 72 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC--------CEEEccceE-EEECCCCCCCCceEEEECC
Confidence 58665333332 247899999999999999999987654321 123333322 21211 35678888753
Q ss_pred CCCCcEEEEEecChHHHHHHHHHHHHH
Q 005588 97 GRDGRAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 97 ~~~~rty~fqAdSeeE~~eWi~AL~~a 123 (689)
....+.|+|+|++.+++..|+.+|+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 73 DRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 223789999999999999999999853
No 94
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.68 E-value=1.9e-08 Score=89.15 Aligned_cols=98 Identities=18% Similarity=0.370 Sum_probs=66.9
Q ss_pred EEEEeeeeeecCC-CCCCcEEEEEEEeCC-----eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-------ccC
Q 005588 20 FKSGPLFISSKGI-GWKSWKKRWFILTRT-----SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------RED 86 (689)
Q Consensus 20 ~KeG~L~l~KkG~-~~k~WkKRWFVL~~~-----~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~-------~~~ 86 (689)
.++|||| +.|+ .+|.||||||+|.+- .+.-|+.++. .+...+.|.+..+.-+..... -..
T Consensus 3 k~sGyL~--k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks-----~P~e~~qldGyTvDy~~~~~~~~~~~~~~~g 75 (117)
T cd01234 3 KHCGYLY--AIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKA-----EPTEFIQLDGYTVDYMPESDPDPNSELSLQG 75 (117)
T ss_pred ceeEEEE--eccchhhhhhheeEEEEEchhHHHHHHHhhhhhcC-----CchhheeecceEEeccCCCCCCccccccccc
Confidence 4899777 7776 799999999999974 3444554432 233345677777766544221 123
Q ss_pred CcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (689)
Q Consensus 87 kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a 127 (689)
.+++|--.- .|....|..+++.|+.-|++|+=+|..++
T Consensus 76 g~~ff~avk---egd~~~fa~~de~~r~lwvqa~yratgqs 113 (117)
T cd01234 76 GRHFFNAVK---EGDELKFATDDENERHLWVQAMYRATGQS 113 (117)
T ss_pred chhhhheec---cCcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence 445554332 37899999999999999999999887543
No 95
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.67 E-value=1.8e-08 Score=113.24 Aligned_cols=169 Identities=15% Similarity=0.170 Sum_probs=141.2
Q ss_pred CCCCCCcccccchHHHhhhCCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHH----HHHHhh-cCCccCCCCCCcc
Q 005588 158 KRPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDR----RVQEYE-QGKTEFSADEDAH 232 (689)
Q Consensus 158 ~~~~~~~vFG~pL~~ll~~~~~VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~----L~~~ld-~g~~~~~~~~Dvh 232 (689)
...+...-||+||+..|.+.+.+|..+......|...+..++++||..-...-+.+ ....+. .|.....+...+|
T Consensus 409 e~~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~ 488 (741)
T KOG4724|consen 409 ESELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVH 488 (741)
T ss_pred hhhhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCch
Confidence 34455678999999999999999999988888999999999999998544333222 222222 3666666777999
Q ss_pred cchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHH-------HHhccCChhHHHHHHHHHHHHHHhhcccC
Q 005588 233 VIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS-------AILETFPEPNRRLLQRILRMMHTISSHAH 305 (689)
Q Consensus 233 ~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~-------lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~ 305 (689)
++++++|.|+|.+|..++..+.+.+++++.....++++.++++. ....+.|..+..+....+.-.+.+..++.
T Consensus 489 taasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse 568 (741)
T KOG4724|consen 489 TAASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSE 568 (741)
T ss_pred HHHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceecccccc
Confidence 99999999999999999999999999999999998999999997 13358899989888888888888999999
Q ss_pred CCCCCccchhhhhcccccCCC
Q 005588 306 ENRMTPSAVAACMAPLLLRPL 326 (689)
Q Consensus 306 ~NkMta~NLAivfaP~Llr~~ 326 (689)
.+.|+..|++.|..|+++...
T Consensus 569 ~~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 569 ETSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred cccccccccCCCCCccccchh
Confidence 999999999999999998744
No 96
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.61 E-value=3.7e-07 Score=82.02 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=59.9
Q ss_pred eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc--CCcceEEEEeC
Q 005588 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--DKKLLTVLFPD 96 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~--~kk~~FvI~~~ 96 (689)
.+++|+|. |.+. ...|+|+||.+.+..||+.+.... ..... ..+.|++.......... ..+++|.|..
T Consensus 2 ~ikEG~L~--K~~~-k~~~~R~~FLFnD~LlY~~~~~~~-----~~~y~-~~~~i~L~~~~V~~~~~~~~~~~~F~I~~- 71 (99)
T cd01220 2 FIRQGCLL--KLSK-KGLQQRMFFLFSDLLLYTSKSPTD-----QNSFR-ILGHLPLRGMLTEESEHEWGVPHCFTIFG- 71 (99)
T ss_pred eeeEEEEE--EEeC-CCCceEEEEEccceEEEEEeecCC-----CceEE-EEEEEEcCceEEeeccCCcCCceeEEEEc-
Confidence 58999665 4443 345777666666655555443211 11111 23445555443211222 3457888875
Q ss_pred CCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 97 ~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
.++.|.|+|.|++|+.+||.+|+.+|.
T Consensus 72 --~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 72 --GQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred --CCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 379999999999999999999999985
No 97
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.59 E-value=5.7e-07 Score=82.38 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=74.2
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCC--CCceeeeee--CcEEcCCCcc--ee--eccCCcceE
Q 005588 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ--RGGEVNLTL--GGIDLNNSGS--VV--VREDKKLLT 91 (689)
Q Consensus 20 ~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~--~~~e~~l~L--~~I~L~~~~s--v~--~~~~kk~~F 91 (689)
..+|||.+.+.++..++|+++|+||.+..|++|..+.+...+ ......+++ +.+.+...+. +. ...+-+++|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 468988888887777899999999999999999877654332 223344455 3455544333 21 224455778
Q ss_pred EEEe----CCCCCcEEEEEecChHHHHHHHHHHHHH
Q 005588 92 VLFP----DGRDGRAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 92 vI~~----~~~~~rty~fqAdSeeE~~eWi~AL~~a 123 (689)
.|+. ...++.+.+|-|+++.|.+.|+.||...
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 7765 2335689999999999999999999865
No 98
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.59 E-value=1.8e-08 Score=116.32 Aligned_cols=95 Identities=26% Similarity=0.493 Sum_probs=76.5
Q ss_pred CCceEEEEeeeeeecCCCCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee---c-cCCcc
Q 005588 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---R-EDKKL 89 (689)
Q Consensus 16 ~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~--~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~---~-~~kk~ 89 (689)
..+.+.+|||| |+|...|.||.|||||.. ..|+||.+-.++.| -|.|++....+|.. + .+.+-
T Consensus 1631 teNr~~eG~Ly--KrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~p---------kG~IdLaevesv~~~~~k~vdekg 1699 (1732)
T KOG1090|consen 1631 TENRIPEGYLY--KRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKP---------KGCIDLAEVESVALIGPKTVDEKG 1699 (1732)
T ss_pred ccccCcccchh--hcchhhcccccceeEecCCccceeeecccccccc---------cchhhhhhhhhhcccCccccCccc
Confidence 44456699888 999999999999999986 59999999888874 45677777666544 1 34556
Q ss_pred eEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 90 ~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
+|.+.. ..|+|.|+|.+....++|+..|+.++
T Consensus 1700 ffdlkt---t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1700 FFDLKT---TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred eeeeeh---hhHHHHHHhccchHHHHHHHHHHHhh
Confidence 777765 37999999999999999999999876
No 99
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.59 E-value=1.3e-07 Score=85.44 Aligned_cols=101 Identities=24% Similarity=0.323 Sum_probs=62.6
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc--EEcCCCcceeeccCCcceEEEEeCCC
Q 005588 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG--IDLNNSGSVVVREDKKLLTVLFPDGR 98 (689)
Q Consensus 21 KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~--I~L~~~~sv~~~~~kk~~FvI~~~~~ 98 (689)
.+|+||++.-| .|+|||+||+|++.-|+|+...+...++... .-..+.+ |-........-.....++|++.+...
T Consensus 2 ~~g~LylK~~g--kKsWKk~~f~LR~SGLYy~~Kgksk~srdL~-cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~ 78 (114)
T cd01259 2 MEGPLYLKADG--KKSWKKYYFVLRSSGLYYFPKEKTKNTRDLA-CLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGD 78 (114)
T ss_pred ccceEEEccCC--CccceEEEEEEeCCeeEEccCCCcCCHHHHH-HHHhcccCcEEEEechhhccCCCCCceEEEecccc
Confidence 47999977655 5899999999999999888554433322100 0000111 11111111112234558999976221
Q ss_pred ----CCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 99 ----DGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 99 ----~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
..-.-+|||+++..+..|+.|||-+.
T Consensus 79 q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 79 QSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred CcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 23468899999999999999999664
No 100
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.43 E-value=2.7e-06 Score=76.96 Aligned_cols=103 Identities=13% Similarity=0.271 Sum_probs=71.5
Q ss_pred EEEeeeeeecCCC--CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeC-cEEcCCCcc--ee--eccCCcceEEE
Q 005588 21 KSGPLFISSKGIG--WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG-GIDLNNSGS--VV--VREDKKLLTVL 93 (689)
Q Consensus 21 KeG~L~l~KkG~~--~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~-~I~L~~~~s--v~--~~~~kk~~FvI 93 (689)
.+|||-+.+.++. .++|++.|+||.+..|++|..+.+...+. +...+.++ .+++...++ |. ...+-++.|.|
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~-p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENST-PSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCC-cEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 5897766677554 46899999999999999998876653222 33333333 244343333 21 22445577888
Q ss_pred EeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
+.. +.+++.+|-|+++.|.+.|+.+|.+-|.
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 763 4469999999999999999999998763
No 101
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.36 E-value=4.9e-07 Score=105.08 Aligned_cols=104 Identities=25% Similarity=0.387 Sum_probs=77.7
Q ss_pred CCceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC------Ccc
Q 005588 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKL 89 (689)
Q Consensus 16 ~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~------kk~ 89 (689)
+-.|..-|||++..-+.++..|+||||+|.|+.+.|||.+.+.+.+ + +++.|+|+.|+.-....- +.+
T Consensus 987 ~idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK-~-----Pig~IDLt~CTsq~ie~a~rdicar~n 1060 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRK-V-----PIGQIDLTKCTSQSIEEARRDICARPN 1060 (1116)
T ss_pred ccceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhccc-C-----cceeeehhhhhccccccchhhhccCCc
Confidence 3457778999999888888999999999999999999998887632 2 678899999888433221 122
Q ss_pred eEEEE-e----CCC-----CCc-EEEEEecChHHHHHHHHHHHHHHh
Q 005588 90 LTVLF-P----DGR-----DGR-AFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 90 ~FvI~-~----~~~-----~~r-ty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
-|-|. . .++ ..| ...|.|+|.++++.|+.+|..++-
T Consensus 1061 tFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1061 TFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred eeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 23333 1 011 112 678999999999999999999874
No 102
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.25 E-value=7.1e-06 Score=74.31 Aligned_cols=92 Identities=24% Similarity=0.296 Sum_probs=59.8
Q ss_pred CCCceEEEEeeeeeecCCCCCCcEEEEEEEeCC-eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 005588 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (689)
Q Consensus 15 ~~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~-~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI 93 (689)
++..++++|++. |+.+.+ +++|||+|+++ .|+|+..... . .-|.|.++....+... ..+.|++.
T Consensus 9 ~ge~Il~~g~v~--K~kgl~--~kkR~liLTd~PrL~Yvdp~~~-~---------~KGeI~~~~~l~v~~k-~~~~F~I~ 73 (104)
T PF14593_consen 9 PGELILKQGYVK--KRKGLF--AKKRQLILTDGPRLFYVDPKKM-V---------LKGEIPWSKELSVEVK-SFKTFFIH 73 (104)
T ss_dssp -T--EEEEEEEE--EEETTE--EEEEEEEEETTTEEEEEETTTT-E---------EEEEE--STT-EEEEC-SSSEEEEE
T ss_pred CCCeEEEEEEEE--EeeceE--EEEEEEEEccCCEEEEEECCCC-e---------ECcEEecCCceEEEEc-cCCEEEEE
Confidence 367899999665 444333 89999999987 7766644322 1 3366888877666553 33456676
Q ss_pred EeCCCCCcEEEEEecChHHHHHHHHHHHHHHhh
Q 005588 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (689)
Q Consensus 94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~ 126 (689)
++ +|+|+|.. .......|+++|+.+..+
T Consensus 74 tp----~RtY~l~d-~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 74 TP----KRTYYLED-PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp ET----TEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred CC----CcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 76 89999988 555688899999998753
No 103
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.21 E-value=8.7e-06 Score=90.30 Aligned_cols=146 Identities=12% Similarity=0.168 Sum_probs=117.7
Q ss_pred cHHHHHHHHHHHhcCCCcCCee---ecCCCHHHHHHHHHHh-hcCCcc----------CCCCCCcccchhhHHHHhhhCC
Q 005588 181 PSFLEKALRFLEKFGTKVEGIL---RQAADVEEVDRRVQEY-EQGKTE----------FSADEDAHVIGDCVKHVLRELP 246 (689)
Q Consensus 181 P~iL~~~i~~Le~~Gl~~EGIF---R~sG~~~~v~~L~~~l-d~g~~~----------~~~~~Dvh~VAslLK~fLReLP 246 (689)
=.+|..|...|..+|+++++|| |..-+...++.+...| ..+... .....++|+++++||-.+..||
T Consensus 9 ~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RLp 88 (420)
T PF08101_consen 9 KDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRLP 88 (420)
T ss_pred HHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHcC
Confidence 3478888999999999999998 7777888888877755 333211 1234699999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHHhhcccCCCCCCccchhhhhcccccCC
Q 005588 247 SSPVPASCCTALLEAYKIDRKEARISAMRSAILETFP-EPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (689)
Q Consensus 247 ePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP-~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NLAivfaP~Llr~ 325 (689)
..+|+.+.|..|...-+..+ --..++..+|...|| +.|..++.-++.+|..|+.|+..|.|+..-|+-.+|+-+|-.
T Consensus 89 ~gvVgW~~Y~~Fk~~E~~~~--yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~~ 166 (420)
T PF08101_consen 89 GGVVGWDSYEEFKRREREAG--YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFGH 166 (420)
T ss_pred CCccccHHHHHHHHHHhhcC--CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCCC
Confidence 99999999999987643322 234566666666674 667889999999999999999999999999999999999987
Q ss_pred CCC
Q 005588 326 LLA 328 (689)
Q Consensus 326 ~~~ 328 (689)
...
T Consensus 167 ~~~ 169 (420)
T PF08101_consen 167 PDF 169 (420)
T ss_pred CCc
Confidence 643
No 104
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.96 E-value=1.7e-05 Score=90.46 Aligned_cols=114 Identities=26% Similarity=0.361 Sum_probs=76.2
Q ss_pred CCceEEEEeeeeeecCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec----cCCc
Q 005588 16 SNTVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR----EDKK 88 (689)
Q Consensus 16 ~~~V~KeG~L~l~KkG~---~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~----~~kk 88 (689)
...|.|+|.++.+-+|. +.+++|||||.|++..|.|.|++... +...|++.+...|..- .+.+
T Consensus 562 ~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q----------~~~~Ipl~nI~avEklee~sF~~k 631 (800)
T KOG2059|consen 562 EPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ----------PIYTIPLSNIRAVEKLEEKSFKMK 631 (800)
T ss_pred CCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC----------cccceeHHHHHHHHHhhhhccCCC
Confidence 34566666555443332 24678999999999999999997654 3556777776664321 2333
Q ss_pred ce-EEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhCCcchhccCccccccCCC
Q 005588 89 LL-TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDT 144 (689)
Q Consensus 89 ~~-FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~~~~~~g~~~~f~~~~ 144 (689)
++ .+|.. .|+.||||.+..|..+|+++|+++...+++.- ..-|.|.|+.+.
T Consensus 632 nv~qVV~~----drtly~Q~~n~vEandWldaL~kvs~~N~~rL-as~HPgaF~s~~ 683 (800)
T KOG2059|consen 632 NVFQVVHT----DRTLYVQAKNCVEANDWLDALRKVSCCNQNRL-ASYHPGAFRSDS 683 (800)
T ss_pred ceEEEEec----CcceeEecCCchHHHHHHHHHHHHhccCcchh-hhcCCcccccCc
Confidence 44 45544 38999999999999999999999875433211 112456676654
No 105
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.94 E-value=2e-05 Score=87.37 Aligned_cols=106 Identities=23% Similarity=0.274 Sum_probs=65.8
Q ss_pred CceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeC--cEEcCCCcceeeccCCcceEEEE
Q 005588 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG--GIDLNNSGSVVVREDKKLLTVLF 94 (689)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~--~I~L~~~~sv~~~~~kk~~FvI~ 94 (689)
+...++||||++..| +|+|||.||||+..-|||+...+...|+...-+. .++ .|...-.....-+....++|.|.
T Consensus 315 ~~pei~GfL~~K~dg--kKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~-~~~~snVYt~i~~rKkyksPTd~~f~~K 391 (622)
T KOG3751|consen 315 SPPEIQGFLYLKEDG--KKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLA-DLHSSNVYTGIGGRKKYKSPTDYGFCIK 391 (622)
T ss_pred CCccccceeeecccc--cccceeEEEEEecCcceEccCCCCCCchhhHHHH-hcccCceEEeecchhccCCCCCceEEee
Confidence 446789999966555 6899999999999999998666555543211000 011 11111111111112334777776
Q ss_pred eCCC---CCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 95 PDGR---DGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 95 ~~~~---~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
+..- ..-.-+|||+++..+..|+.|||-+..
T Consensus 392 ~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky 425 (622)
T KOG3751|consen 392 PNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY 425 (622)
T ss_pred eccccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence 6221 123568999999999999999997653
No 106
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=7.2e-06 Score=91.11 Aligned_cols=123 Identities=22% Similarity=0.297 Sum_probs=74.4
Q ss_pred CCCCCCCceEEEEeeeee-------ecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc-EEcCCCcce
Q 005588 11 PRPGASNTVFKSGPLFIS-------SKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGSV 81 (689)
Q Consensus 11 ~~~~~~~~V~KeG~L~l~-------KkG-~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~-I~L~~~~sv 81 (689)
..+.++-.+.|.|+|-.+ ||. .++++||.-|.||+|-.||+-|++-... +.-.. -.|.. |.+...-..
T Consensus 498 v~~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~--kalse-~~lknavsvHHALAt 574 (774)
T KOG0932|consen 498 VPPDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPG--KALSE-SDLKNAVSVHHALAT 574 (774)
T ss_pred CCCCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcc--cchhh-hhhhhhhhhhhhhcC
Confidence 333456778999977533 221 2367899999999999999988754221 10000 01111 222221111
Q ss_pred eeccCCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh--hCCcchhccCc
Q 005588 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA--QAPSAALVMGH 136 (689)
Q Consensus 82 ~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~--~aP~~~~~~g~ 136 (689)
...+.+|..||+..++.+.|+|+|||.+.++|+.||..|.-+.+ .||.-+...|.
T Consensus 575 ~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~fSaPpfPaaV~S 631 (774)
T KOG0932|consen 575 PATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAAFSAPPFPAAVGS 631 (774)
T ss_pred CCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHhccCCCCcccccc
Confidence 12233444455555566899999999999999999999998764 44544433333
No 107
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.73 E-value=0.0001 Score=67.21 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=61.2
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-------cCCcceEE
Q 005588 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------EDKKLLTV 92 (689)
Q Consensus 20 ~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-------~~kk~~Fv 92 (689)
+||||+- --...-+.|||+|++|+...|.+|+++...+ ....|+|.....|... ....+||.
T Consensus 1 lkEGWmV--HyT~~d~~rKRhYWrLDsK~Itlf~~e~~sk---------yyKeIPLsEIl~V~~~~~~~~~~~~~~hcFE 69 (117)
T cd01239 1 LKEGWMV--HYTSSDNRRKKHYWRLDSKAITLYQEESGSR---------YYKEIPLAEILSVSSNNGDSVLAKHPPHCFE 69 (117)
T ss_pred CccceEE--EEecCccceeeeEEEecCCeEEEEEcCCCCe---------eeEEeehHHheEEeccCCCcCCCCCCCcEEE
Confidence 4799663 2223346799999999999999999987665 3444555444443221 34568999
Q ss_pred EEeCCCCCcEEEEEecC--------------------hHHHHHHHHHHHHH
Q 005588 93 LFPDGRDGRAFTLKAET--------------------SEDLYEWKTALELA 123 (689)
Q Consensus 93 I~~~~~~~rty~fqAdS--------------------eeE~~eWi~AL~~a 123 (689)
|.+ ...+||...+. ....+-|-+||++|
T Consensus 70 i~T---~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 70 IRT---TTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEe---cCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 976 37899997752 23458888888764
No 108
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.67 E-value=0.00018 Score=83.58 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=72.8
Q ss_pred CceEEEEeeeeeecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC----CcceE
Q 005588 17 NTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED----KKLLT 91 (689)
Q Consensus 17 ~~V~KeG~L~l~KkG-~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~----kk~~F 91 (689)
..+.++||||.-... .+..--++|||||.+..|.|||.++... .++++...+..++-|..... .+.+|
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-------~~pirs~~id~~~rVed~Gr~~~~g~~~y 74 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-------QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 74 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-------cccceeeccCCCceEeecCceEEcCceEE
Confidence 457899999966443 3344569999999999999999976543 23455555555444433221 23456
Q ss_pred EEEe--CCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588 92 VLFP--DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (689)
Q Consensus 92 vI~~--~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a 127 (689)
++.. .....+...|.|-+.+|...|+.||+.|+.++
T Consensus 75 vl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 75 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred EEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 6654 33345678999999999999999999999865
No 109
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.67 E-value=0.00038 Score=63.20 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=61.4
Q ss_pred ceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCC
Q 005588 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (689)
Q Consensus 18 ~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~ 97 (689)
..+++|-|. |-. ++.-+.|||.|-++.|+|-+-.... .+......++|.++.+.+... ....+..|.|..
T Consensus 3 ~li~eG~L~--K~~--rk~~~~R~ffLFnD~LvY~~~~~~~-~~~~~~~~i~L~~~~v~~~~d---~~~~~n~f~I~~-- 72 (104)
T cd01218 3 VLVGEGVLT--KMC--RKKPKQRQFFLFNDILVYGNIVISK-KKYNKQHILPLEGVQVESIED---DGIERNGWIIKT-- 72 (104)
T ss_pred EEEecCcEE--Eee--cCCCceEEEEEecCEEEEEEeecCC-ceeeEeeEEEccceEEEecCC---cccccceEEEec--
Confidence 468899665 333 4557889999999999885321110 000111223444444332211 112345566654
Q ss_pred CCCcEEEEEecChHHHHHHHHHHHHHHhh
Q 005588 98 RDGRAFTLKAETSEDLYEWKTALELALAQ 126 (689)
Q Consensus 98 ~~~rty~fqAdSeeE~~eWi~AL~~ai~~ 126 (689)
..+.|.++|+|++|..+|+.+|..|+.+
T Consensus 73 -~~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 73 -PTKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred -CCeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999864
No 110
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.59 E-value=0.00019 Score=65.36 Aligned_cols=96 Identities=20% Similarity=0.308 Sum_probs=61.0
Q ss_pred EEeeeeeecC--CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcC-------CCcc-eeeccCCcceE
Q 005588 22 SGPLFISSKG--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLN-------NSGS-VVVREDKKLLT 91 (689)
Q Consensus 22 eG~L~l~KkG--~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~-------~~~s-v~~~~~kk~~F 91 (689)
-|||.-+-.+ ...+.|+.+|++|++..|++|+..+.... ...-++...+|. .... ......+.+||
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e----~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F 77 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVE----DWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCF 77 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHH----HHhChhhhChhHHhhhheeccCCccCcCCCCceEE
Confidence 4855422222 24689999999999999999998876432 111122222222 1010 00012555788
Q ss_pred EEEeCCCCCcEEEEEecChHHHHHHHHHHHH
Q 005588 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (689)
Q Consensus 92 vI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ 122 (689)
.+...+. -..++|..++..|+..|..||.+
T Consensus 78 ~irtg~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 78 LIRTGTQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred EEEcCCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 8876432 38999999999999999999864
No 111
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.58 E-value=0.0006 Score=62.69 Aligned_cols=103 Identities=19% Similarity=0.277 Sum_probs=65.2
Q ss_pred CceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCC-CC--Cceee----eeeCcEEcCCCcceeeccCCcc
Q 005588 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-QR--GGEVN----LTLGGIDLNNSGSVVVREDKKL 89 (689)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p-~~--~~e~~----l~L~~I~L~~~~sv~~~~~kk~ 89 (689)
+..+++|-| .|-+...+.++.|+|-|-++.|+|-|....... .| +.... +++..+.+.+... ...-++
T Consensus 2 ~elI~EG~L--~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~kn 76 (112)
T cd01261 2 NEFIMEGTL--TRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKN 76 (112)
T ss_pred ccccccCcE--EEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCc
Confidence 356789944 455544567899999999999999886443111 11 11111 2333333332111 012246
Q ss_pred eEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhh
Q 005588 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (689)
Q Consensus 90 ~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~ 126 (689)
.|.|... +++.|.|+|.|+++..+||++|..++.+
T Consensus 77 aF~I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 77 AFEIILK--DGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred eEEEEcC--CCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 6777642 3679999999999999999999988754
No 112
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.51 E-value=0.00023 Score=80.91 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=62.2
Q ss_pred CCceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEE-cCCCCCCCCCCceeeeeeCcEEcCCCcceee--ccCCcceEE
Q 005588 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFF-KNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTV 92 (689)
Q Consensus 16 ~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YY-Kd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~--~~~kk~~Fv 92 (689)
.+.+.+.||++ +.+...+ |++|||.+.++.+... +..+........ .+...++..+..+.. ...+.++|+
T Consensus 374 ~sDv~~~G~l~--k~~~~~~-wk~ry~~l~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~v~pv~~~~~~~~~~~~~ 446 (478)
T PTZ00267 374 TSDVTHGGYLY--KYSSDMR-WKKRYFYIGNGQLRISLSENPENDGVAPK----SVNLETVNDVFPVPEVYSQKHPNQLV 446 (478)
T ss_pred cCCcccceEEe--ccCCCcc-hhhheEEecCCceEEEeccccccCCCCCc----cccHHHhcccccccHHhcCCCCceEE
Confidence 34678899666 6665444 9999999998655544 323221111111 111222333322211 123467777
Q ss_pred EEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 93 I~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
+.. +.++.++|.|++++++++||.+|+.++.
T Consensus 447 i~~--~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 447 LWF--NNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred EEe--cCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 743 4588999999999999999999999873
No 113
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.38 E-value=0.00018 Score=85.85 Aligned_cols=98 Identities=21% Similarity=0.377 Sum_probs=70.0
Q ss_pred ceEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeC
Q 005588 18 TVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (689)
Q Consensus 18 ~V~KeG~L~l~KkG~-~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~ 96 (689)
.....|+|| ++.. ..+.|+||||-..++.+.|++.-..... .+..+|..+.+..+.. ..++++||.|+.
T Consensus 273 ~~~~~~~l~--~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~~---~~drr~CF~iiS- 342 (785)
T KOG0521|consen 273 GYRMEGYLR--KKASNASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDAE---QRDRRFCFEIIS- 342 (785)
T ss_pred hhhhhhhhh--hhcccchhhHHhhhhhhhccccccccccccccc----cccccchhccccCCcc---cccceeeEEEec-
Confidence 345556555 5543 4889999999999999999876554331 2223444444444322 236889999876
Q ss_pred CCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588 97 GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (689)
Q Consensus 97 ~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a 127 (689)
..++|.|||+++.+...||.+|+..+..+
T Consensus 343 --~tks~~lQAes~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 343 --PTKSYLLQAESEKDCQDWISALQNSILSA 371 (785)
T ss_pred --CCcceEEecCchhHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999644
No 114
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=96.90 E-value=0.00058 Score=77.87 Aligned_cols=96 Identities=16% Similarity=0.253 Sum_probs=66.2
Q ss_pred CceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeC
Q 005588 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (689)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~ 96 (689)
....|+| |.++-+...+.|+|||||++.+.+.||+.+.+........+.+.-+.+.+.. .....|.+..
T Consensus 247 e~~ekSg--y~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~--------~~s~~fqli~- 315 (936)
T KOG0248|consen 247 ETMEKSG--YWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ--------GAAYAFQLIT- 315 (936)
T ss_pred chhhccc--chhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc--------chhHHhhhhh-
Confidence 6678999 6567777789999999999999999999887755332222222222222222 2222333322
Q ss_pred CCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 97 ~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
....|+|-++++--..+|++.|+.+|.
T Consensus 316 --~t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 316 --STDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred --hceeEEEeccChhhhhhhHHHHHHHHH
Confidence 257899999999999999999998885
No 115
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.88 E-value=0.0063 Score=53.48 Aligned_cols=86 Identities=22% Similarity=0.329 Sum_probs=56.4
Q ss_pred eEEEEeeeeeecCCCCCCcEEEEEEEeCC-eEEEEcCCCCCCCCCCceeeeeeCcEEcCC-CcceeeccCCcceEEEEeC
Q 005588 19 VFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVVREDKKLLTVLFPD 96 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~-~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~-~~sv~~~~~kk~~FvI~~~ 96 (689)
+.+.|.++ |+.+. .+++|=++|++. .|+|+ |+.... .-|.|+++. +..+... ..+.|++.++
T Consensus 1 Il~~g~v~--Kr~gl--f~kkR~LiLTd~PrL~yv-dp~~~~---------~KgeIp~s~~~l~v~~~-~~~~F~I~Tp- 64 (89)
T cd01262 1 ILKIGAVK--KRKGL--FAKKRQLILTNGPRLIYV-DPVKKV---------VKGEIPWSDVELRVEVK-NSSHFFVHTP- 64 (89)
T ss_pred Cceeeeee--ehhcc--ccceeeEEEecCceEEEE-cCCcCe---------EEeEecccccceEEEEe-cCccEEEECC-
Confidence 45778554 44432 579999999976 55555 443222 235577777 4444333 3356677676
Q ss_pred CCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 97 GRDGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 97 ~~~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
+|+|+|. +-......|+.+|..+.
T Consensus 65 ---~rty~le-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 65 ---NKVYSFE-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred ---CceEEEE-CCCCCHHHHHHHHHHHh
Confidence 8999995 55688999999998763
No 116
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=96.69 E-value=0.00094 Score=74.89 Aligned_cols=97 Identities=29% Similarity=0.402 Sum_probs=65.4
Q ss_pred eEEEEeeeeeecCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC------Ccce
Q 005588 19 VFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLL 90 (689)
Q Consensus 19 V~KeG~L~l~KkG~--~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~------kk~~ 90 (689)
...+|-|- .|||. .++.|+.|||.|.|..|.|-|....... .-..|++....+|..-.. -+..
T Consensus 735 p~iEGQLK-EKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS--------~~~~IDl~~IRSVk~v~~kr~~rslpKA 805 (851)
T KOG3723|consen 735 PLIEGQLK-EKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDS--------DDCPIDLSKIRSVKAVAKKRRDRSLPKA 805 (851)
T ss_pred chhcchhh-hhccchhhhhhhccceEEecchhhhcccCCCCCCC--------CCCCccHHHhhhHHHHHhhhhhcccchh
Confidence 36677331 23332 3688999999999999999776543321 113366766666542111 1135
Q ss_pred EEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (689)
Q Consensus 91 FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a 127 (689)
|.|++. ..+|.|+|.+++-.++|+++|+=|++.|
T Consensus 806 FEIFTA---D~T~ILKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 806 FEIFTA---DKTYILKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred hheeec---CceEEeecccccCHHHHHHHHHHHHHHH
Confidence 666552 6789999999999999999999988754
No 117
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.63 E-value=0.027 Score=52.61 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=55.4
Q ss_pred eeeeeecCC---CCCCcEEEEEEEeC--CeEEEEcCCCCCCCCC-CceeeeeeCcEEcCCCcceeecc----CCcceEEE
Q 005588 24 PLFISSKGI---GWKSWKKRWFILTR--TSLVFFKNDPSALPQR-GGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVL 93 (689)
Q Consensus 24 ~L~l~KkG~---~~k~WkKRWFVL~~--~~L~YYKd~~~~~p~~-~~e~~l~L~~I~L~~~~sv~~~~----~kk~~FvI 93 (689)
|||+-.+++ .....++|||.|.. .+|+|+..++...... ...-.+.+..+.-.......+.. +..++|+|
T Consensus 14 ~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i 93 (123)
T PF12814_consen 14 WLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIII 93 (123)
T ss_pred EEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEE
Confidence 666432222 23578999999997 4777776544322111 11111222222211111111111 12234444
Q ss_pred EeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
.. ++|+.-|-|.+.++.+-|+++|+..++
T Consensus 94 ~t---~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 94 VT---PDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred Ec---CCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 43 479999999999999999999998764
No 118
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.53 E-value=0.027 Score=50.59 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=58.9
Q ss_pred ceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCC
Q 005588 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (689)
Q Consensus 18 ~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~ 97 (689)
..+++|.|...+. =+.|++-|=...|.|-|-..+.. .-.-.+.+..+.+... ....++.|.+....
T Consensus 3 eLlleg~l~~~~~------~~eR~vFLFe~~ll~~K~~~~~y---~~K~~i~~~~l~i~e~-----~~~d~~~F~v~~~~ 68 (97)
T cd01222 3 DLLLEGRFREHGG------GKPRLLFLFQTMLLIAKPRGDKY---QFKAYIPCKNLMLVEH-----LPGEPLCFRVIPFD 68 (97)
T ss_pred ceeeeceEEeecC------CCceEEEEecccEEEEEecCCee---EEEEEEEecceEEecC-----CCCCCcEEEEEecC
Confidence 4577886642221 24588888888888877544321 1111122333333321 12336889887754
Q ss_pred CCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 98 ~~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
.+.+.|.|+|.|.++...|+++|+.++
T Consensus 69 ~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 69 DPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 555799999999999999999999886
No 119
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=96.50 E-value=0.00057 Score=76.99 Aligned_cols=102 Identities=21% Similarity=0.433 Sum_probs=66.4
Q ss_pred CCceEEEEeeeeeecCCCCCCcEEEEEEEeCC-----eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-CCcc
Q 005588 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-----SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-DKKL 89 (689)
Q Consensus 16 ~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~-----~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~-~kk~ 89 (689)
+...-.+||||.-.+. .||.||||||||..- .+.-|+.++. .| ..-+.|.|+.+.-......-. .+.|
T Consensus 461 p~nmkhsgylyaig~n-vwkrwkkrffvlvqvsqytfamcsyrekka-ep----qel~qldgytvdytdp~pglqgg~~f 534 (1218)
T KOG3543|consen 461 PPNMKHSGYLYAIGRN-VWKRWKKRFFVLVQVSQYTFAMCSYREKKA-EP----QELIQLDGYTVDYTDPSPGLQGGKHF 534 (1218)
T ss_pred CCccccceeehhhhhH-HHHHhHhhEEEEEEhhhhhhHhhhhhhccc-Ch----HHHhhccCeeeccCCCCCccccchHH
Confidence 3445678999955444 389999999999864 3334444332 22 223456666654422211112 3334
Q ss_pred eEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (689)
Q Consensus 90 ~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a 127 (689)
|..+.- |.+..|..+++.++.-|++|+-+|..++
T Consensus 535 fnavke----gdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 535 FNAVKE----GDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred HHHhcc----CceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 445543 7899999999999999999999998765
No 120
>PLN02866 phospholipase D
Probab=96.47 E-value=0.014 Score=70.92 Aligned_cols=88 Identities=19% Similarity=0.319 Sum_probs=56.5
Q ss_pred CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCC--Ccceee------ccCCcceEEEEeCCCCCcEEEEE
Q 005588 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN--SGSVVV------REDKKLLTVLFPDGRDGRAFTLK 106 (689)
Q Consensus 35 k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~--~~sv~~------~~~kk~~FvI~~~~~~~rty~fq 106 (689)
.+|.||||||+.+.|.|.+++.+..+.. +-+.......+. ...+.. ....++-|.|+. .+|.+.|.
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~~---v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~---~~r~l~l~ 289 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKPLD---IIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTC---GNRSIRLR 289 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCceeE---EEEEecccccccCCCcceeecccccccCCCcceEEEec---CceEEEEE
Confidence 4699999999999999998876654211 111000000011 111111 122345676765 47999999
Q ss_pred ecChHHHHHHHHHHHHHHhhCC
Q 005588 107 AETSEDLYEWKTALELALAQAP 128 (689)
Q Consensus 107 AdSeeE~~eWi~AL~~ai~~aP 128 (689)
|.+...+..|+.+|+.+..+.|
T Consensus 290 ~~s~~~~~~w~~ai~~~~~~~~ 311 (1068)
T PLN02866 290 TKSSAKVKDWVAAINDAGLRPP 311 (1068)
T ss_pred ECCHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999985544
No 121
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.46 E-value=0.009 Score=68.49 Aligned_cols=37 Identities=14% Similarity=0.287 Sum_probs=31.3
Q ss_pred CcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 87 kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
.++.|.+.. ++|+.|.|+|.+.++++.||.+|++++.
T Consensus 454 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 454 AAHVFAVAF--KTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCcEEEEEe--cCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 456666654 5699999999999999999999999974
No 122
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.43 E-value=0.001 Score=57.45 Aligned_cols=93 Identities=10% Similarity=0.090 Sum_probs=58.2
Q ss_pred EEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceee--eeeCcEEcCCCcceeeccCCcceEEEEeCCCC
Q 005588 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVN--LTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (689)
Q Consensus 22 eG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~--l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~ 99 (689)
+||||...+|. -+|||.+|++..|.+|.++.... ..++. ..+-.+++.+-....+ .-.-..|-|-..+++
T Consensus 1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG~~---L~sF~L~~s~~s~Pm~~~~~A~~-N~Gi~A~G~L~~~~~ 72 (104)
T PF15408_consen 1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGGQY---LCSFQLSSSVVSHPMVNFSQAVP-NLGINAFGFLMYSPS 72 (104)
T ss_pred CCeEEEeccch----HHHHHHhhhhceeEEecccCCce---eeeeehhhhhhhcccccccccCC-CCCeeEEEEEEecCC
Confidence 69999888886 58899999999999998765432 11111 1111233322111000 001123444334567
Q ss_pred CcEEEEEecChHHHHHHHHHHHH
Q 005588 100 GRAFTLKAETSEDLYEWKTALEL 122 (689)
Q Consensus 100 ~rty~fqAdSeeE~~eWi~AL~~ 122 (689)
++..-+.|++.+.|+.|++++.+
T Consensus 73 ~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 73 RRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred cchhhhhhhHHHHHHHHHHHhcC
Confidence 88888999999999999999874
No 123
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.31 E-value=0.0019 Score=78.96 Aligned_cols=161 Identities=15% Similarity=0.230 Sum_probs=124.2
Q ss_pred ccccchHHH---hhhCCCCcHHHHH-HHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhcCCc---cC----CCCCCccc
Q 005588 165 VVGRPILLA---LEDIDGGPSFLEK-ALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EF----SADEDAHV 233 (689)
Q Consensus 165 vFG~pL~~l---l~~~~~VP~iL~~-~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~g~~---~~----~~~~Dvh~ 233 (689)
++|+++..+ .......|.++.. +.......|....|+||.++....+...+..++.... .+ ....++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 888888666 2223457888888 7777777899999999999998888888888876421 11 11335667
Q ss_pred chhhHHHHhhhC--CCCCCChhhHHHHH----------------HHHhcCCHHHHH-------HHHHHHHhc----cCCh
Q 005588 234 IGDCVKHVLREL--PSSPVPASCCTALL----------------EAYKIDRKEARI-------SAMRSAILE----TFPE 284 (689)
Q Consensus 234 VAslLK~fLReL--PePLlp~~ly~~~i----------------~~~~~~~~e~ri-------~~l~~lIl~----~LP~ 284 (689)
..+.++.|+|.+ |.+......|.-++ .........+++ ..+.. +.. .+|.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~-~~~~e~~~vP~ 620 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSE-LARYEPSTVPF 620 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHH-hhccCCCCCCH
Confidence 777999999999 99988888888777 334444445555 56665 345 8999
Q ss_pred hHHHHHHHHHHHHHHhhcccCCC-CCCc-cchhhhhcc----cccCCC
Q 005588 285 PNRRLLQRILRMMHTISSHAHEN-RMTP-SAVAACMAP----LLLRPL 326 (689)
Q Consensus 285 ~N~~lL~~Ll~~L~~Va~~s~~N-kMta-~NLAivfaP----~Llr~~ 326 (689)
....+|.++..++.+|.....+| -|+. .||..+|++ +++...
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 99999999999999999998888 8888 999999999 555543
No 124
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=96.30 E-value=0.0041 Score=68.85 Aligned_cols=95 Identities=20% Similarity=0.334 Sum_probs=65.8
Q ss_pred ceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCC
Q 005588 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (689)
Q Consensus 18 ~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~ 97 (689)
-+...| ++.|.......|+-|||+|..+.|.||+++..+.. | ..|.|.+.....-....+...|++.+
T Consensus 23 w~e~~G--~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~h--G-----cRgsi~l~ka~i~ahEfDe~rfdIsv--- 90 (611)
T KOG1739|consen 23 WVERCG--VLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEH--G-----CRGSICLSKAVITAHEFDECRFDISV--- 90 (611)
T ss_pred chhhcc--eeeeeecccccccceEEEEcccchhhhhhhhhhhc--c-----cceeeEeccCCcccccchhheeeeEe---
Confidence 345556 44466666778999999999999999999877652 2 23345555433322223333444443
Q ss_pred CCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 98 ~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
+..++++.|.+...++.|+.+|...-.
T Consensus 91 -n~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 91 -NDNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred -ccceeeehhcCcHHHHHHHHHHHHHhh
Confidence 268999999999999999999998765
No 125
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=96.22 E-value=0.0018 Score=75.59 Aligned_cols=94 Identities=22% Similarity=0.326 Sum_probs=66.5
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCC
Q 005588 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (689)
Q Consensus 21 KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~ 100 (689)
.+|||+ .|-..-..|+|-|.|.+.-+|+|||+..+..+. .+++|-++.+..... ...-.|-+.|.+... .
T Consensus 926 Lsg~Ll--rkfknssgwqkLwvvft~fcl~fyKS~qD~~~l----aslPlLgysvs~P~~-~d~i~K~~vfkl~fk---~ 995 (1036)
T KOG3531|consen 926 LSGYLL--RKFKNSSGWQKLWVVFTNFCLFFYKSHQDSEPL----ASLPLLGYSVSIPAE-PDPIQKDYVFKLKFK---S 995 (1036)
T ss_pred hhHHHH--HHhhccccceeeeeeecceeeEeeccccccccc----ccccccccccCCCCC-CCCcchhheeeeehh---h
Confidence 346555 332234479999999999999999998887642 344566666654222 111235577777653 6
Q ss_pred cEEEEEecChHHHHHHHHHHHHHH
Q 005588 101 RAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 101 rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
.+|+|.|++.-..++|+..|+.+-
T Consensus 996 hvyffraes~yt~~rw~evi~~a~ 1019 (1036)
T KOG3531|consen 996 HVYFFRAESYYTFERWMEVITDAP 1019 (1036)
T ss_pred hHHHHhhhhhhhhhhHHHHhhcCC
Confidence 899999999999999999998664
No 126
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.00 E-value=0.011 Score=53.66 Aligned_cols=94 Identities=21% Similarity=0.310 Sum_probs=62.7
Q ss_pred ceEEEEeeeeeecCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceEEE
Q 005588 18 TVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVL 93 (689)
Q Consensus 18 ~V~KeG~L~l~KkG~-~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---~~kk~~FvI 93 (689)
.++..| |+.|-|+ ....|++|||-|-++.|-+|....... ++ -|.+.....|.+. -....|-++
T Consensus 2 DcIvhG--yi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~----~e------Li~M~~i~~V~~e~~~iK~~~CI~i 69 (116)
T cd01240 2 DCIVHG--YIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANK----PE------LITMDQIEDVSVEFQQIKEENCILL 69 (116)
T ss_pred ceEEee--ehhhhCCHHHHHHHHHHheeCcceeeecccccccC----Cc------EEEeehhhhcchhheeeccCceEEE
Confidence 467889 4446654 467899999999999999975443322 11 1333332222211 122345666
Q ss_pred EeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 94 ~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
... +++.+++.++++.+..+|..-|+.+..
T Consensus 70 k~k--~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 70 KIR--DEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred EEc--CCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 553 478899999999999999999998864
No 127
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.90 E-value=0.38 Score=44.09 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=56.3
Q ss_pred eEEEEeeeeeecCCCCCCc-EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceEEEE
Q 005588 19 VFKSGPLFISSKGIGWKSW-KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVLF 94 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~W-kKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~---~~kk~~FvI~ 94 (689)
.+.+|=|.... . .+.| +.|+|-|-++.|+|-|...-..+...-...+.+..+.+.+...-... ..-+..|.|.
T Consensus 2 li~~Gel~~~s--~-~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 2 LFLQGEATRQK--Q-NKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred ceEeeeEEEEe--c-ccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 46778554333 1 1223 57899999999999885432111111112223333333332210000 0113556666
Q ss_pred eCCCCCcEEEEEecChHHHHHHHHHHHH
Q 005588 95 PDGRDGRAFTLKAETSEDLYEWKTALEL 122 (689)
Q Consensus 95 ~~~~~~rty~fqAdSeeE~~eWi~AL~~ 122 (689)
.. ..+..|.|+|.|+++...||.||..
T Consensus 79 ~~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SE-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred Ec-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 53 3357899999999999999999875
No 128
>PF15406 PH_6: Pleckstrin homology domain
Probab=94.89 E-value=0.05 Score=49.44 Aligned_cols=69 Identities=20% Similarity=0.350 Sum_probs=47.3
Q ss_pred EEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecChHHHHHHHHH
Q 005588 40 RWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTA 119 (689)
Q Consensus 40 RWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~A 119 (689)
-|..-+|.-|.||....+.. .+-|.|.|.....+......+|.|.+ .|..+.|+|.+..||+.||.+
T Consensus 42 AwAsqTGKGLLF~~K~~dka--------~P~GiinLadase~~~~g~~kF~f~~-----~G~khtF~A~s~aERD~Wv~~ 108 (112)
T PF15406_consen 42 AWASQTGKGLLFFSKAEDKA--------SPSGIINLADASEPEKDGSNKFHFKI-----KGHKHTFEAASAAERDNWVAQ 108 (112)
T ss_pred hhhhccCceEEEEecccccc--------CCcceEehhhccccccCCCceEEEEe-----CCceeeeecCCHHHhccHHHH
Confidence 46666776666665322222 14566888776665554445544444 389999999999999999999
Q ss_pred HH
Q 005588 120 LE 121 (689)
Q Consensus 120 L~ 121 (689)
|.
T Consensus 109 lk 110 (112)
T PF15406_consen 109 LK 110 (112)
T ss_pred hh
Confidence 86
No 129
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=94.80 E-value=0.033 Score=63.33 Aligned_cols=105 Identities=20% Similarity=0.278 Sum_probs=69.2
Q ss_pred CCCCceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce-eeccCCcceEE
Q 005588 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLTV 92 (689)
Q Consensus 14 ~~~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv-~~~~~kk~~Fv 92 (689)
.+++.++|+|.|+ |-.....+-..||++|-+..+.|-+-.. ..+ +..+.. -..+.+..+... .......+.|+
T Consensus 267 ~PsreLiKEG~l~--Kis~k~~~~qeRylfLFNd~~lyc~~r~-~~~--~~k~~~-r~~~s~~~~~v~~~~~~~~~~tF~ 340 (623)
T KOG4424|consen 267 SPSRELIKEGQLQ--KISAKNGTTQERYLFLFNDILLYCKPRK-RLP--GSKYEV-RARCSISHMQVQEDDNEELPHTFI 340 (623)
T ss_pred CcHHHHhhcccee--eeeccCCCcceeEEEEehhHHHhhhhhh-hcc--cceecc-ceeeccCcchhcccccccCCceEE
Confidence 4677899999666 6665566789999999999888876654 222 111111 011222221111 11123456788
Q ss_pred EEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (689)
Q Consensus 93 I~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a 127 (689)
++. ..|..-|+|.|.++..+|+++|+.+|..+
T Consensus 341 ~~G---~~r~vel~a~t~~ek~eWv~~I~~~Id~~ 372 (623)
T KOG4424|consen 341 LTG---KKRGVELQARTEQEKKEWVQAIQDAIDKH 372 (623)
T ss_pred Eec---ccceEEeecCchhhHHHHHHHHHHHHHHH
Confidence 875 36899999999999999999999999643
No 130
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.76 E-value=0.13 Score=45.83 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=56.2
Q ss_pred eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCC---CCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe
Q 005588 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP---SALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~---~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~ 95 (689)
.+++|+|....+|. =|.|=|-|-++.|+|-+-.. ....+.....-++|..+.+.... |.+
T Consensus 3 Lv~eg~lvel~~~~----rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~-----------~~~-- 65 (96)
T cd01228 3 LVKDSFLVELVEGS----RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP-----------FRI-- 65 (96)
T ss_pred ccccceeeeehhCC----CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecchh-----------hhc--
Confidence 57889776444443 36777778888888776532 11122223334455544443321 222
Q ss_pred CCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 96 DGRDGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 96 ~~~~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
..+++++|+|.|.|..|+.+||.+|+...
T Consensus 66 ~~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 66 HNKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred cccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 13468999999999999999999998653
No 131
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.04 E-value=0.65 Score=43.67 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=48.7
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceeee----eeCcEEcCCCcceee-------ccCCcceEEEEe-CC--CCCcE
Q 005588 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGSVVV-------REDKKLLTVLFP-DG--RDGRA 102 (689)
Q Consensus 37 WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l----~L~~I~L~~~~sv~~-------~~~kk~~FvI~~-~~--~~~rt 102 (689)
-+.+|+.|-++.|.|-|-+. +..+.+ +...+.+..+..... ....++.|.++. .. ...+.
T Consensus 27 ~~~vylfLFnDlLl~tkkK~------~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~e 100 (125)
T cd01221 27 ARTIYLFLFNDLLLITKKKL------GSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAE 100 (125)
T ss_pred CCcEEEEEecceEEEEEecC------CCeEEEEeeccccceEEeecccccccccccccccCCCceEEEEeeccCCCCEEE
Confidence 46789999999998887543 222332 233344443222100 013456777763 22 22357
Q ss_pred EEEEecChHHHHHHHHHHH
Q 005588 103 FTLKAETSEDLYEWKTALE 121 (689)
Q Consensus 103 y~fqAdSeeE~~eWi~AL~ 121 (689)
+.|+|+|+.|+.+||.||.
T Consensus 101 l~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 101 LLLSADSQSDRERWLSALA 119 (125)
T ss_pred EEEECCCHHHHHHHHHhcC
Confidence 9999999999999999984
No 132
>PF15404 PH_4: Pleckstrin homology domain
Probab=93.97 E-value=0.31 Score=48.85 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=27.0
Q ss_pred EEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCC
Q 005588 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP 56 (689)
Q Consensus 21 KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~ 56 (689)
++|+||.+.+. ...|+++|+||..+.|+.|..-.
T Consensus 1 ~sG~LY~K~~k--hs~F~~~~vvL~~G~Li~f~~~~ 34 (185)
T PF15404_consen 1 MSGYLYQKPRK--HSTFKKYFVVLIPGFLILFQLFK 34 (185)
T ss_pred CCceeeecCCC--CCCceEEEEEEeCCEEEEEEEEe
Confidence 46999954433 46899999999999999998743
No 133
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.92 E-value=1.3 Score=41.01 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=52.2
Q ss_pred EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCC--CcEEEEEecChHHHHH
Q 005588 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD--GRAFTLKAETSEDLYE 115 (689)
Q Consensus 38 kKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~--~rty~fqAdSeeE~~e 115 (689)
+.|-+-|-...|+|-|-..... ..+...-..-..|.++...-........+.|.+...+++ ..+|.+||.|.+..+.
T Consensus 25 ~eR~vFLFe~~lvfsk~~~~~~-~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~ 103 (114)
T cd01232 25 RERRVFLFEQSIIFAKEVKKKK-QFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQE 103 (114)
T ss_pred ceeEEEEeeceEEEEEEeccCC-CCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHH
Confidence 5566666677777776543321 111111112233333332221122344577888765553 5799999999999999
Q ss_pred HHHHHHHHHh
Q 005588 116 WKTALELALA 125 (689)
Q Consensus 116 Wi~AL~~ai~ 125 (689)
|+..|+.++.
T Consensus 104 W~~~I~~il~ 113 (114)
T cd01232 104 WVKKIREILQ 113 (114)
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 134
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=93.55 E-value=0.016 Score=65.67 Aligned_cols=72 Identities=22% Similarity=0.298 Sum_probs=50.2
Q ss_pred HHHHHHhhcccCCCCCCccchhhhhcccccCCCCCCCCccccccC--CCCCchHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 005588 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFD--MNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (689)
Q Consensus 294 l~~L~~Va~~s~~NkMta~NLAivfaP~Llr~~~~~~~~le~~~~--~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~I 371 (689)
++||..|+.++....|.+.|||+||+|+|+|.+. ++.-.. ..|+ ++..+.....-++++++.|-+.|
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrske-----ies~lcs~~~Gd------aAf~avq~qsvV~EfilnhvDvl 69 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKE-----IESSLCSHLWGD------AAFSAVQAQSVVSEFILNHVDVL 69 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHH-----HHHhhhcccccc------HHHHHHHhhhhhhhhccccccee
Confidence 3689999999999999999999999999999763 222111 0122 12222222334678999999999
Q ss_pred CCCCC
Q 005588 372 FDDES 376 (689)
Q Consensus 372 F~~~~ 376 (689)
|..-.
T Consensus 70 F~~~a 74 (670)
T KOG1449|consen 70 FLPTA 74 (670)
T ss_pred cCCcC
Confidence 98654
No 135
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=92.68 E-value=0.037 Score=62.78 Aligned_cols=175 Identities=19% Similarity=0.190 Sum_probs=113.3
Q ss_pred CcccccchHHHhh-hCCCCcH-HHHHHHHHHHh---cC--CCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccch
Q 005588 163 SLVVGRPILLALE-DIDGGPS-FLEKALRFLEK---FG--TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIG 235 (689)
Q Consensus 163 ~~vFG~pL~~ll~-~~~~VP~-iL~~~i~~Le~---~G--l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VA 235 (689)
...||.-|....- -++.||. .+.+||..+.. ++ +...|.|++..+.... .+...|....|+.++.
T Consensus 207 ~~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S 278 (670)
T KOG1449|consen 207 NLNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVES 278 (670)
T ss_pred CccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeec
Confidence 3455554433322 2456888 77788776665 22 3445677766543221 2234556678999999
Q ss_pred hhHHHHhhhCCCCCCChhhHHHHHHHHhcCC-HHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccch
Q 005588 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDR-KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (689)
Q Consensus 236 slLK~fLReLPePLlp~~ly~~~i~~~~~~~-~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NL 314 (689)
-+++-|.+.+|.|+.. .++...| ..+.+..++- ....+++.|+.+-..|..||.....-. .++
T Consensus 279 ~d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~-~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~ 342 (670)
T KOG1449|consen 279 WDMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRF-SLETMSEAHYRTAKFLSEHFTRLCKSK-------KSL 342 (670)
T ss_pred cccChhhhhcCCCCcc--------cccccccCcccceeeecc-ccccCCcccchHhhhhchhhhhhcccc-------ccc
Confidence 9999999999999544 2222222 3344455443 446899999999999999998877633 899
Q ss_pred hhhhcccccCCCCCCCCcccc-ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 005588 315 AACMAPLLLRPLLAGECELED-DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 315 AivfaP~Llr~~~~~~~~le~-~~~~~g~~~~~l~~~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
+|++.|+++|++.. ++. ++-..++ .+....+..+.|++....|..+.
T Consensus 343 ~I~~~~~~~r~ppt----L~~~~~h~~~~-----------~~~~~~~~~~~~e~s~~~~~~~i 390 (670)
T KOG1449|consen 343 AIVWSPNLFRPPPT----LNGADTHLLSG-----------LNVHTAICDFFIENSESLFVNDI 390 (670)
T ss_pred eeecCCCCCCCCCC----CCchhhhhccc-----------CCcceeecccchhhhhhhhhccc
Confidence 99999999998842 222 1111111 12234567889999999998765
No 136
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=92.16 E-value=0.1 Score=61.62 Aligned_cols=95 Identities=25% Similarity=0.389 Sum_probs=66.6
Q ss_pred CCceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe
Q 005588 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (689)
Q Consensus 16 ~~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~ 95 (689)
...+++.|||-+.+-+ +.....|||..+.+..+.||..+++..++ +.|.+...+.|.. ...+.+-+++
T Consensus 84 isp~~~~gwldk~~pq-g~~~~qkr~vkf~~~s~~yf~~~k~py~k---------~~i~va~is~v~~-~gd~kfevit- 151 (1186)
T KOG1117|consen 84 ISPVIKSGWLDKLSPQ-GEYPFQKRWVKFDGSSLEYFLSPKDPYSK---------GPIPVAAISAVRN-FGDNKFEVIT- 151 (1186)
T ss_pred cCchhhcchhhccCcC-cccccCccceecCCCCccccCCCCCCCCC---------Cceeeehhhhhhh-ccCceEEEEe-
Confidence 3458999965433222 24557999999999999999998876633 3355554443322 2233334444
Q ss_pred CCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 96 ~~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
+.|+|.|.++++.++..|+..++.+..
T Consensus 152 ---n~r~fvfr~e~~~~r~~w~s~l~s~~~ 178 (1186)
T KOG1117|consen 152 ---NQRTFVFRQESEGERFIWVSPLQSALK 178 (1186)
T ss_pred ---cceEEEEecCCcccceeeechhhhcch
Confidence 389999999999999999999998873
No 137
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=91.24 E-value=0.13 Score=61.30 Aligned_cols=90 Identities=23% Similarity=0.361 Sum_probs=58.1
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCC
Q 005588 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (689)
Q Consensus 20 ~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~ 99 (689)
-.+|||+ |.....++|.+|||+|.++.|.||++......... +.+.+.... .......-+... .+.
T Consensus 78 ~~~g~l~--k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~-------~~~~~~~a~---i~~~~~~~~~~~-~~~- 143 (799)
T KOG1737|consen 78 SLEGILL--KWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCG-------GGINLVTAW---IQNGERMDICSV-DGS- 143 (799)
T ss_pred cccceee--ccccccCCcccceEEecCcceeeeccCCccccCCC-------Ccccccccc---cccCCCcccchh-hcc-
Confidence 4568555 77778899999999999999999988765543222 122222110 011111112222 122
Q ss_pred CcEEEEEecChHHHHHHHHHHHHH
Q 005588 100 GRAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 100 ~rty~fqAdSeeE~~eWi~AL~~a 123 (689)
...|+..+-+...+..|+.+++.+
T Consensus 144 ~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 144 CQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred cchhhhhhhHHHhhcchhhhhhhc
Confidence 467889999999999999999876
No 138
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.40 E-value=2.8 Score=39.85 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=50.7
Q ss_pred EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecChHHHHHHH
Q 005588 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (689)
Q Consensus 38 kKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi 117 (689)
+.|..-|-...++|-|-............-..-..|.++...-..........|.+....+ ..+|.++|.|.+..+.|+
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKAAWV 108 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHHHHH
Confidence 4577777777777776543221111111111122233332211111123356788876543 569999999999999999
Q ss_pred HHHHHHHh
Q 005588 118 TALELALA 125 (689)
Q Consensus 118 ~AL~~ai~ 125 (689)
..|+..+.
T Consensus 109 ~~I~~iL~ 116 (133)
T cd01227 109 NEIRKVLT 116 (133)
T ss_pred HHHHHHHH
Confidence 99999984
No 139
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.22 E-value=2.2 Score=38.56 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=44.4
Q ss_pred EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecChHHHHHHH
Q 005588 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (689)
Q Consensus 38 kKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi 117 (689)
++..|-|-+..|+|-.-.... +.......+|..+-+.+... ...-+.+|.|.. ..+.+.+||+|+++..+|+
T Consensus 20 ~rv~~FLfND~Lvva~~~~~~--ky~~~~~~~L~~i~V~ni~D---~~~~kNafki~t---~~~s~i~qaes~~~K~eWl 91 (100)
T cd01226 20 QRVMLFLLNDRLIVGNINAAG--KYVMESTYSLNSVAVVNVKD---RENAKKVLKLLI---FPESRIYQCESARIKTEWF 91 (100)
T ss_pred ceEEEEEeccEEEEEEecccc--eEEEEEEEehHHeEEEecCC---CcCcCceEEEEe---CCccEEEEeCCHHHHHHHH
Confidence 344355555556555332211 11223334444444433211 112234555543 2688999999999999999
Q ss_pred HHHHHHH
Q 005588 118 TALELAL 124 (689)
Q Consensus 118 ~AL~~ai 124 (689)
..|+++.
T Consensus 92 ~~le~a~ 98 (100)
T cd01226 92 EELEQAK 98 (100)
T ss_pred HHHHHHh
Confidence 9999886
No 140
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=89.75 E-value=1.8 Score=39.01 Aligned_cols=82 Identities=17% Similarity=0.303 Sum_probs=49.0
Q ss_pred CCCcEEEEEEEeC----CeEEEEcC--CCCCCCCCCceeeeeeC-cEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEE
Q 005588 34 WKSWKKRWFILTR----TSLVFFKN--DPSALPQRGGEVNLTLG-GIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLK 106 (689)
Q Consensus 34 ~k~WkKRWFVL~~----~~L~YYKd--~~~~~p~~~~e~~l~L~-~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fq 106 (689)
...|+|--.+|+. ..|.||-- ++...|+.+ +... ...+..++.... .++...|++... ++..|.|.
T Consensus 18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~----v~C~~I~EvR~tt~LEm-PD~~nTFvLK~~--~~~eyI~E 90 (107)
T cd01231 18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQ----VACSSISEVRECTRLEM-PDNLYTFVLKVD--DNTDIIFE 90 (107)
T ss_pred ccccceeeEEEEecCCCceEEEEccCCCCCCCCccc----cchhhhhhhhhcccccc-cCcccEEEEEec--CCceEEEE
Confidence 4568887777763 35555544 343333221 1111 122233332222 345567888763 46789999
Q ss_pred ecChHHHHHHHHHHHH
Q 005588 107 AETSEDLYEWKTALEL 122 (689)
Q Consensus 107 AdSeeE~~eWi~AL~~ 122 (689)
|.+..+++.|+..|+.
T Consensus 91 a~d~~q~~SWla~Ir~ 106 (107)
T cd01231 91 VGDEQQLNSWLAELRY 106 (107)
T ss_pred cCCHHHHHHHHHHHhc
Confidence 9999999999999974
No 141
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=89.65 E-value=0.61 Score=50.27 Aligned_cols=105 Identities=15% Similarity=0.261 Sum_probs=67.9
Q ss_pred CCCCceEEEEeeeeeecC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc-----eeeccCC
Q 005588 14 GASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-----VVVREDK 87 (689)
Q Consensus 14 ~~~~~V~KeG~L~l~KkG-~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~s-----v~~~~~k 87 (689)
..+..++..||.--...+ ..+..++.||..|+|.+++.|..++-... .++-....+.+...-. ....+.+
T Consensus 276 ~v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~----dw~rAe~ty~vye~mfki~Kdsd~~D~R 351 (505)
T KOG3549|consen 276 AVGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTA----DWSRAEVTYKVYETMFKIVKDSDTVDSR 351 (505)
T ss_pred CccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchh----hhhhhhhhHHHHHHHHHHhccccccccc
Confidence 356789999944322222 34677799999999999999987654321 1111111111111000 0112457
Q ss_pred cceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 88 k~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
++||.+... .+...||..+...|+..|-++.+.|+
T Consensus 352 ~~CF~~qs~--~ge~~yfsVEl~seLa~wE~sfq~At 386 (505)
T KOG3549|consen 352 QHCFLLQSS--GGEPRYFSVELRSELARWENSFQAAT 386 (505)
T ss_pred cceEEEEcC--CCCceEEEEehhhHHHHHHHHHhhHH
Confidence 799998763 57899999999999999999998876
No 142
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=88.75 E-value=1.1 Score=42.62 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=25.9
Q ss_pred ceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHH
Q 005588 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (689)
Q Consensus 89 ~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~a 123 (689)
+.|.|..-++.+..|+|+|+|..++++|+++|.++
T Consensus 100 yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 100 YPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 56677666667778999999999999999999865
No 143
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.59 E-value=2.8 Score=38.92 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=50.4
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceee----eeeCcEEcCCCc--ceee-ccCCcceEEEEeCCCCCcEEEEEecC
Q 005588 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVN----LTLGGIDLNNSG--SVVV-REDKKLLTVLFPDGRDGRAFTLKAET 109 (689)
Q Consensus 37 WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~----l~L~~I~L~~~~--sv~~-~~~kk~~FvI~~~~~~~rty~fqAdS 109 (689)
=+.||.-|-+..+++-|...... +.++.. +.+..+.|.... .... ...-++.|.+... ..+..|.|+|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Kt 96 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKT 96 (116)
T ss_pred CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCC
Confidence 35888888888787877554321 111111 222333333221 1110 0122355666553 223679999999
Q ss_pred hHHHHHHHHHHHHHHhh
Q 005588 110 SEDLYEWKTALELALAQ 126 (689)
Q Consensus 110 eeE~~eWi~AL~~ai~~ 126 (689)
+++...||.+|..|+..
T Consensus 97 ee~K~kWm~al~~a~sn 113 (116)
T cd01223 97 EHLRKKWLKALEMAMSN 113 (116)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999863
No 144
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=87.09 E-value=0.09 Score=60.49 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=39.8
Q ss_pred eEEEEeeeeeecCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCC
Q 005588 19 VFKSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNS 78 (689)
Q Consensus 19 V~KeG~L~l~KkG~~-~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~ 78 (689)
-..+||||+.|.-+. ...|+|.||||.+..|++|.+..... .+..+.|-.+.|...
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~----~e~~i~l~~~~i~~a 618 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRA----AESVIKLPLFTISVA 618 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhc----hhheeeccchhhhhH
Confidence 456788887776532 46699999999999999999987665 333444555544443
No 145
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=86.97 E-value=1.1 Score=39.76 Aligned_cols=49 Identities=29% Similarity=0.411 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHhhc-cCCCcccCCCccCCccccchhHHHHHHH
Q 005588 623 RLALEQDVSRLQEQLQ------AERDLRAALEVGL-SMSSGQFSSSRGMDSKVCTDHKRFVSFL 679 (689)
Q Consensus 623 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~gl-~~~~~~~~~~~~~d~~~~~~lee~~~~~ 679 (689)
...|+++.++|||||. +||==|.||++|| +|- .-|....+.+||||.-+
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~eie--------I~d~eL~~~FeeIa~RF 59 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLGEIE--------ISDAELQAAFEEIAARF 59 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc--------CCHHHHHHHHHHHHHHH
Confidence 3568888999999985 6999999999999 543 22456678888888653
No 146
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.36 E-value=4.4 Score=37.27 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=56.5
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecChHHHHHH
Q 005588 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (689)
Q Consensus 37 WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eW 116 (689)
=..||++|-.+.|++....+... --.-+..++|.++.++.... ....++.|.|+. +--....+.|.+.+|..+|
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~s-Gf~yqGkLPL~~i~v~~lEd---~e~~~~aFeI~G--~li~~i~v~C~~~~e~~~W 101 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMS-GFIYQGKLPLTGIIVTRLED---TEALKNAFEISG--PLIERIVVVCNNPQDAQEW 101 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCcc-ceEEeeeecccccEEechHh---ccCccceEEEec--cCcCcEEEEeCCHHHHHHH
Confidence 36899999999998887654322 01123446777777775322 134457788863 3345788999999999999
Q ss_pred HHHHHHHH
Q 005588 117 KTALELAL 124 (689)
Q Consensus 117 i~AL~~ai 124 (689)
+..|++-+
T Consensus 102 l~hL~~~~ 109 (111)
T cd01225 102 VELLNANN 109 (111)
T ss_pred HHHHHhhc
Confidence 99998743
No 147
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.36 E-value=12 Score=40.75 Aligned_cols=64 Identities=28% Similarity=0.357 Sum_probs=45.2
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 005588 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHE-------RRLALEQDVSRLQEQLQAE-RDLRAALEV 649 (689)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 649 (689)
=.++....|+.|..+|+-.+-.+|++|.||++.|.+ -+.+|||.+..||++.--= +-.|.|||-
T Consensus 211 visa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~ 282 (365)
T KOG2391|consen 211 VISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK 282 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 356677789999999999999999999999887665 4556666666666554311 222346664
No 148
>PF15411 PH_10: Pleckstrin homology domain
Probab=84.12 E-value=13 Score=34.55 Aligned_cols=86 Identities=21% Similarity=0.221 Sum_probs=58.5
Q ss_pred CCcEEEEEEEeCCeEEEEcCCCCCCCC---------CCceeeeee-CcEEcCCCcceeecc-CCcceEEEEe-CCCCCcE
Q 005588 35 KSWKKRWFILTRTSLVFFKNDPSALPQ---------RGGEVNLTL-GGIDLNNSGSVVVRE-DKKLLTVLFP-DGRDGRA 102 (689)
Q Consensus 35 k~WkKRWFVL~~~~L~YYKd~~~~~p~---------~~~e~~l~L-~~I~L~~~~sv~~~~-~kk~~FvI~~-~~~~~rt 102 (689)
..|+-+.|-|-...|.++|+....... +.....+.| |.|.+.+...+.... ...+.-.|.. ..+.--.
T Consensus 19 ~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g~~~L~i~w~~d~e~~~ 98 (116)
T PF15411_consen 19 DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPGSYSLQISWKGDPELEN 98 (116)
T ss_pred CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCCceEEEEEEcCCCCCce
Confidence 469999999999999999987665432 122333444 447777776655433 2334444444 2334568
Q ss_pred EEEEecChHHHHHHHHHH
Q 005588 103 FTLKAETSEDLYEWKTAL 120 (689)
Q Consensus 103 y~fqAdSeeE~~eWi~AL 120 (689)
|+|...+++.|..|-.+|
T Consensus 99 F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 99 FTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred EEEEeCCHHHHHHHHhhC
Confidence 999999999999998875
No 149
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=83.93 E-value=0.53 Score=52.72 Aligned_cols=103 Identities=15% Similarity=-0.021 Sum_probs=59.3
Q ss_pred CceEEEEeeeeeecCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC---C
Q 005588 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED---K 87 (689)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~------~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~---k 87 (689)
+..+|.|+++++....+.|.|.++|++|..+ .|.+|..++.... +... .+.-+.+.++++.+|..... .
T Consensus 6 ~~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~-~~~~-~~~rR~~~ls~~~S~e~~~~~~~~ 83 (429)
T KOG4047|consen 6 SCLVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESV-RWPY-RCLRRYGYLSNLFSFESGRRCQTG 83 (429)
T ss_pred CcccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCccc-ccch-hcceeeEeeccceeeecccccccC
Confidence 4568999999888888889999999999875 3334433322211 1111 11125577777666543211 1
Q ss_pred cceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 88 k~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
...|+++...... +|-+...-+...|+++|....
T Consensus 84 ~~i~~~f~~~a~e---~~~~~q~l~~~~w~~~i~~~~ 117 (429)
T KOG4047|consen 84 PGITAFFCDRAEE---LFNMLQDLMQANWINAIEEPA 117 (429)
T ss_pred CCceEEEecchHH---HHHHHHHHHhhhhhhhhhhcc
Confidence 1222222211111 566666677888999987654
No 150
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=82.04 E-value=0.87 Score=49.84 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=66.8
Q ss_pred CceEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-------cCCcc
Q 005588 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------EDKKL 89 (689)
Q Consensus 17 ~~V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-------~~kk~ 89 (689)
..|-+-|||--+-.+.+...|+.-+++|+...|.+|.+-+.+.. .+.-+.....|.-..-|... ..-..
T Consensus 290 ~evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~ke----aws~P~~~ypLvaTRLvhsg~~~~s~~~g~~l 365 (506)
T KOG3551|consen 290 SEVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKE----AWSRPRHTYPLVATRLVHSGSGKGSVIKGLTL 365 (506)
T ss_pred cchhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHH----HhcChhhhhhhhhhhheecCCCCCCCcCCceE
Confidence 36777796665555677889999999999999999988665432 11123333332211111110 11113
Q ss_pred eEEEEeCCCCC-cEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588 90 LTVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALAQA 127 (689)
Q Consensus 90 ~FvI~~~~~~~-rty~fqAdSeeE~~eWi~AL~~ai~~a 127 (689)
.|..-+.++.| .+|+|.++|..|+-.|...|-.--++|
T Consensus 366 sFa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch~A 404 (506)
T KOG3551|consen 366 SFATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCHEA 404 (506)
T ss_pred EEEEecccccceEEEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 45554444433 699999999999999998886554433
No 151
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=80.45 E-value=0.034 Score=69.83 Aligned_cols=105 Identities=24% Similarity=0.329 Sum_probs=67.3
Q ss_pred CCCceEEEEeeeeeec------CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc---EEcCCCcc-ee-e
Q 005588 15 ASNTVFKSGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG---IDLNNSGS-VV-V 83 (689)
Q Consensus 15 ~~~~V~KeG~L~l~Kk------G~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~---I~L~~~~s-v~-~ 83 (689)
+......+|+||.+.- ...-+.|.+-||++..+.+.||+|.+.... + +.+..++ ..+..+.. +. .
T Consensus 2295 ~~~w~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a--~--ve~~~r~e~~lel~~a~i~~a~d 2370 (2473)
T KOG0517|consen 2295 NSAWRQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLA--S--VELLVRGEPPLELDMAAIEVASD 2370 (2473)
T ss_pred CcHHHHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccc--c--chhhccCCcchhcchhHHHHHHH
Confidence 3344577899974421 123577999999999999999999765331 1 0111111 11111111 11 1
Q ss_pred ccCCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 84 ~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
..++++.|.+. .++|..|.|+|.++++|+.|+.++....+
T Consensus 2371 y~kkk~v~~l~--~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2371 YHKKKHVFLLQ--LPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred HHHHhHhhhhc--CCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 13455666665 46799999999999999999999887775
No 152
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=76.76 E-value=1.1 Score=52.21 Aligned_cols=90 Identities=6% Similarity=-0.152 Sum_probs=57.1
Q ss_pred eEEEEeeeeeecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCC
Q 005588 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~ 98 (689)
..+.| +++++.+.+|+|+.+||++.++.+.||+++.+.. .+... .-+++.+.-... ..+.. ..++
T Consensus 259 ~s~~k--~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~-s~~~~---~~~~~s~~fqli----~~t~~-~~~~---- 323 (936)
T KOG0248|consen 259 TSRIK--SLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIR-SVTKL---EQQGAAYAFQLI----TSTDK-MNFM---- 323 (936)
T ss_pred hHHHH--HHHhHheeeccceEEEEEcCCCccccccCccccc-cccee---eccchhHHhhhh----hhcee-EEEe----
Confidence 35556 5557777799999999999999999999987543 22111 111222211000 11111 1122
Q ss_pred CCcEEEEEecChHHHHHHHHHHHHHH
Q 005588 99 DGRAFTLKAETSEDLYEWKTALELAL 124 (689)
Q Consensus 99 ~~rty~fqAdSeeE~~eWi~AL~~ai 124 (689)
..+|++-++...-+..|++++....
T Consensus 324 -~~s~~lt~dw~~iL~~~iKv~~~~~ 348 (936)
T KOG0248|consen 324 -TESERTTHDWVTILSAAIKATTLRE 348 (936)
T ss_pred -ccChhhhhhhHHHHHHHHHHHhccc
Confidence 3578999999999999999988754
No 153
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=76.68 E-value=4.9 Score=35.60 Aligned_cols=46 Identities=28% Similarity=0.447 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHhhc-cCCCcccCCCccCCccccchhHHHHHHH
Q 005588 626 LEQDVSRLQEQL------QAERDLRAALEVGL-SMSSGQFSSSRGMDSKVCTDHKRFVSFL 679 (689)
Q Consensus 626 ~~~~~~~~~~~~------~~~~~~~~~~~~gl-~~~~~~~~~~~~~d~~~~~~lee~~~~~ 679 (689)
+...+++||||| ++||==|.||.+|| .|- .-|....+.+||||.-+
T Consensus 8 I~~eI~kLqe~lk~~e~keAERigRiAlKAGLgeie--------I~d~eL~~aFeeiAaRF 60 (98)
T PRK13848 8 IREEIAKLQEQLKQAETREAERIGRIALKAGLGEIE--------IEEAELQAAFEELAKRF 60 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc--------cCHHHHHHHHHHHHHHH
Confidence 455667777776 47999999999999 443 22455678888888653
No 154
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=75.14 E-value=22 Score=32.42 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=26.8
Q ss_pred cceEEEEeCCC-CCcEEEEEecChHHHHHHHHHHHH
Q 005588 88 KLLTVLFPDGR-DGRAFTLKAETSEDLYEWKTALEL 122 (689)
Q Consensus 88 k~~FvI~~~~~-~~rty~fqAdSeeE~~eWi~AL~~ 122 (689)
..||.|..... +-+++.|-|++.++++.|+..|+.
T Consensus 79 ~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 79 ERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 36777765221 257899999999999999999874
No 155
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.70 E-value=9.6 Score=42.81 Aligned_cols=73 Identities=22% Similarity=0.258 Sum_probs=63.6
Q ss_pred hHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccc
Q 005588 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF 658 (689)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~ 658 (689)
..||+.|..+..+|. ||+.=+..|..+|.+|+.+..+-+.|.--|.++|+||+.||++-..|-.++..-.|++
T Consensus 347 sqlen~k~~~e~~~~-e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 347 SQLENQKQYYELLIT-EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred HHHHhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 478888888877775 6777788899999999999988888999999999999999999999999887777765
No 156
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=73.27 E-value=0.053 Score=58.80 Aligned_cols=82 Identities=27% Similarity=0.432 Sum_probs=60.7
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-cCCcceEEEEeCCCCCcEEEEEecChHH
Q 005588 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVLFPDGRDGRAFTLKAETSED 112 (689)
Q Consensus 34 ~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~-~~kk~~FvI~~~~~~~rty~fqAdSeeE 112 (689)
...|++.|||++...+.||.+....... .-.+.|++..|+.|... ...++-|.|-. .+.+|.|.|.+..-
T Consensus 32 t~~~~k~~~~~~~~~~~~~~d~~A~~~~------~L~~~~~LR~C~~v~e~a~q~nY~~~i~~---~~~~~tL~~~~s~I 102 (593)
T KOG4807|consen 32 TSQWKKHWFVLTDSSLKYYRDSTAEEAD------ELDGEIDLRSCTDVTEYAVQRNYGFQIHT---KDAVYTLSAMTSGI 102 (593)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHhcc------cCCccccHHHHHHHHHHHHHhccceeecc---cchhhhhHHHHHHH
Confidence 3459999999999999999986543311 12355888888774322 34455566643 37899999999999
Q ss_pred HHHHHHHHHHHH
Q 005588 113 LYEWKTALELAL 124 (689)
Q Consensus 113 ~~eWi~AL~~ai 124 (689)
+..|+.|+++.+
T Consensus 103 r~~~~~A~~kT~ 114 (593)
T KOG4807|consen 103 RRNWIEALRKTV 114 (593)
T ss_pred HHHHHHHHHhcc
Confidence 999999999776
No 157
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=72.98 E-value=2.9 Score=47.96 Aligned_cols=94 Identities=22% Similarity=0.277 Sum_probs=58.0
Q ss_pred CCCceEEEEeeee-eecCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce--------eecc
Q 005588 15 ASNTVFKSGPLFI-SSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--------VVRE 85 (689)
Q Consensus 15 ~~~~V~KeG~L~l-~KkG~~~k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv--------~~~~ 85 (689)
.+++..|+||+-. ..+- ..-||.|..|+..++..|.+..... --..|+|....+| .+..
T Consensus 409 ksst~~kEGWmvHyt~~d---~lRkrHYWrldsk~itlfqn~s~~r---------yYkeIPLsEIl~v~~~~~~~~vp~~ 476 (888)
T KOG4236|consen 409 KSSTKLKEGWMVHYTSKD---NLRKRHYWRLDSKCITLFQNESTNR---------YYKEIPLSEILSVSSNNGFSLVPAG 476 (888)
T ss_pred cchhhhhcceEEEEechh---hhhhhhhheeccceeEeeecCCCce---------eEEeecHHHhheeeccCCcccCCCC
Confidence 4667889996521 1111 2235667788888888887765432 1222333333332 2334
Q ss_pred CCcceEEEEeCCCCCcEEEEEecC------------hHHHHHHHHHHHHHH
Q 005588 86 DKKLLTVLFPDGRDGRAFTLKAET------------SEDLYEWKTALELAL 124 (689)
Q Consensus 86 ~kk~~FvI~~~~~~~rty~fqAdS------------eeE~~eWi~AL~~ai 124 (689)
...+||.|.+ ..+.||-.++ .+....|-.||+.++
T Consensus 477 ~~phcFEI~T----~~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 477 TNPHCFEIRT----ATTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred CCCceEEEEe----eeEEEEecCCCCCCccccccccchhhccCchhhhhcc
Confidence 5669999987 4466666666 445889999999887
No 158
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=71.52 E-value=23 Score=37.32 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=36.1
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 005588 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALE 627 (689)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (689)
...+++++..-..|+.+|.+--+....++..++.++++|+.||..|.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666777777887788888888888888888888888776
No 159
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=70.53 E-value=6.2 Score=49.14 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=39.3
Q ss_pred ccCCcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhCCcc
Q 005588 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (689)
Q Consensus 84 ~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~aP~~ 130 (689)
..+++-||+|......-..|-+.|.|..|++.||+.|+.++...|..
T Consensus 681 Atd~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~~ 727 (1167)
T KOG3520|consen 681 ATDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPRN 727 (1167)
T ss_pred hccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCcc
Confidence 35788899998754556799999999999999999999999866543
No 160
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=69.75 E-value=0.68 Score=52.80 Aligned_cols=83 Identities=16% Similarity=0.289 Sum_probs=50.2
Q ss_pred CCCcEEEEEEEeC----CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecC
Q 005588 34 WKSWKKRWFILTR----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAET 109 (689)
Q Consensus 34 ~k~WkKRWFVL~~----~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdS 109 (689)
+|..+|.||..+. ..+.||++.. .+-..+.+.++.++.... ....+-..|.+.+..+.-..+++.|++
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~~------ap~~~i~l~gcev~~dV~--~~~~k~~i~l~~~~~~~msEi~LRCd~ 443 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSRG------APAISINLKGCEVTPDVN--LSQQKYAIKLLVPTAEGMSEIWLRCDN 443 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhcC------CCCCchhhcCcccCCccc--cccccceEEEEeecCCccceeEEecCC
Confidence 5566666666555 4555665541 122223445555544322 222233455555544446789999999
Q ss_pred hHHHHHHHHHHHHHH
Q 005588 110 SEDLYEWKTALELAL 124 (689)
Q Consensus 110 eeE~~eWi~AL~~ai 124 (689)
+...-+||.|.+-|.
T Consensus 444 E~QYA~WMAaCrLAS 458 (664)
T KOG3727|consen 444 EQQYARWMAACRLAS 458 (664)
T ss_pred HHHHHHHHHHhhHhh
Confidence 999999999999774
No 161
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=69.53 E-value=2.7e+02 Score=33.89 Aligned_cols=47 Identities=38% Similarity=0.390 Sum_probs=29.6
Q ss_pred hhhhhhhhhHHHHHH---------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Q 005588 603 RGNAILQASLERRKQ---------ALHERRLALEQDVS-RLQEQLQAERDLRAALEV 649 (689)
Q Consensus 603 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 649 (689)
+.|.-||..+-.-.+ +.=||||+-||+-. .|..||++||.-|.+-|.
T Consensus 467 ~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~ 523 (697)
T PF09726_consen 467 QENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEE 523 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456777764322222 33477777777765 677888888877765543
No 162
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=67.21 E-value=40 Score=32.49 Aligned_cols=104 Identities=16% Similarity=0.293 Sum_probs=60.2
Q ss_pred eEEEEeeeeeecCCCCCCcE----EEEEEEeCCeEEEEcCCCCCCCCCCc--------e-------eeeeeCcEEcCCCc
Q 005588 19 VFKSGPLFISSKGIGWKSWK----KRWFILTRTSLVFFKNDPSALPQRGG--------E-------VNLTLGGIDLNNSG 79 (689)
Q Consensus 19 V~KeG~L~l~KkG~~~k~Wk----KRWFVL~~~~L~YYKd~~~~~p~~~~--------e-------~~l~L~~I~L~~~~ 79 (689)
....|..|+.--- ..+.|| -.-||.+.-.+++||+....+.+-++ + .-++.....+....
T Consensus 28 L~h~~v~WLNp~~-slgk~kKe~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n 106 (160)
T cd01255 28 LYHGGVEWLNPSD-SLGKIKKELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASS 106 (160)
T ss_pred hhhcceeeecCCh-hhccccCCceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCC
Confidence 3444555644221 123344 46789999988999886544322111 0 00111111111111
Q ss_pred ceeeccCCcceEEEEe-----CCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 80 SVVVREDKKLLTVLFP-----DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 80 sv~~~~~kk~~FvI~~-----~~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
....+.++.+.++. .+++.++|.||+.+++..+..+..|++.+.
T Consensus 107 --~ad~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilr 155 (160)
T cd01255 107 --AADMESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILR 155 (160)
T ss_pred --CcCcccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHH
Confidence 11234556666654 455788999999999999999999999885
No 163
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=61.29 E-value=7.1 Score=46.74 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=40.3
Q ss_pred EEcCCCcceeeccC---CcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588 73 IDLNNSGSVVVRED---KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (689)
Q Consensus 73 I~L~~~~sv~~~~~---kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a 127 (689)
.++..+..+..... +-+.|.+.+.+...-.|.|.|++.+++.+|+++|+.+...+
T Consensus 856 ~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 856 LDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred ccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 44444444444333 33778887777777889999999999999999999987644
No 164
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=60.57 E-value=23 Score=29.09 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (689)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (689)
.|.+|--.||.+++|++..+.+=+.-|+|-|+
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999999999999999998775
No 165
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.35 E-value=42 Score=34.34 Aligned_cols=62 Identities=16% Similarity=0.262 Sum_probs=32.3
Q ss_pred HhHhhhhhHHHHHHHHH----HhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 584 IQRLEITKNDLRHRIAK----EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (689)
Q Consensus 584 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (689)
+++||..-.+|+.+++. --..++.||-.++.+++...+ |+++-++|++||+.=+.-..+|++
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~----L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVING----LKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444432 123345666666666666544 667777777766554444444433
No 166
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=56.40 E-value=76 Score=33.92 Aligned_cols=63 Identities=30% Similarity=0.436 Sum_probs=47.1
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 005588 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER---RLALEQDVSRLQEQLQAERDL 643 (689)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 643 (689)
+..+..|...-.+++.|+.++.+.+..|+.-+..-++.|++- |..||.-+..|+++|.--+..
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~ 139 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh
Confidence 345666667777888888888888888888888777777764 555888888888888754433
No 167
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=55.97 E-value=8.9 Score=44.34 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=30.1
Q ss_pred ceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 89 ~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
+||+|..- .+.++.|.|.+.+|++.|++||+.-|-
T Consensus 446 e~F~IVs~--tgqtWhFeAtt~EERdaWvQai~sqIl 480 (749)
T KOG0705|consen 446 ECFEIVSN--TGQTWHFEATTYEERDAWVQAIQSQIL 480 (749)
T ss_pred ceEEEecc--ccchhhhhhcchhhHHHHHHHHHHHHH
Confidence 58888753 478999999999999999999998774
No 168
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=54.10 E-value=56 Score=27.00 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 611 SLERRKQALHERRLALEQDVSRLQEQLQA 639 (689)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (689)
.+++|=|+-..|..+|++.|.+|++++-.
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999854
No 169
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.15 E-value=57 Score=38.59 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=34.8
Q ss_pred hhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccCCCCCCccch
Q 005588 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (689)
Q Consensus 242 LReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~~NkMta~NL 314 (689)
|-+=..|||.......+..+++... .+|+..++. .|++.|.....+.-..-+||+.-|
T Consensus 218 LAERkPPlFnMNAMSALYHIAQNes-------------PtLqs~eWS--~~F~~Fvd~CLqKipqeRptse~l 275 (948)
T KOG0577|consen 218 LAERKPPLFNMNAMSALYHIAQNES-------------PTLQSNEWS--DYFRNFVDSCLQKIPQERPTSEEL 275 (948)
T ss_pred hhhcCCCccCchHHHHHHHHHhcCC-------------CCCCCchhH--HHHHHHHHHHHhhCcccCCcHHHH
Confidence 4555678998888888888777654 245544443 234445545555555667776543
No 170
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=50.64 E-value=21 Score=41.46 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=56.1
Q ss_pred CCCcEEEEEEEeC---CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecCh
Q 005588 34 WKSWKKRWFILTR---TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (689)
Q Consensus 34 ~k~WkKRWFVL~~---~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSe 110 (689)
.+.|+.-|+++-. ..++.|..+.+... ...+++.++.+.....+. ..+..++|.++. ....|+|.|+++
T Consensus 510 ~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a----~~~iPl~~~~v~~pe~~~-~~D~~~~~k~~~---s~~~~~~~a~~~ 581 (623)
T KOG4424|consen 510 GKTGILAWSVVPKSDPLVDYSYGSPQDVRA----QATIPLPGVEVTIPEFVR-REDLFHVFKLVQ---SHLSWHLAADDE 581 (623)
T ss_pred CccceeeeeeccCCCCccccccCCcccccc----ccccccCccccCCCcccc-cchhcchhhhhh---hcceeeeccCCH
Confidence 4579999998853 47888877766442 223456666655433221 123334555554 256899999999
Q ss_pred HHHHHHHHHHHHHHh
Q 005588 111 EDLYEWKTALELALA 125 (689)
Q Consensus 111 eE~~eWi~AL~~ai~ 125 (689)
+-.+.|+..+..|+.
T Consensus 582 q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 582 QLQQRWLEVLLLAVS 596 (623)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988874
No 171
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=49.95 E-value=61 Score=37.17 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=42.4
Q ss_pred ccCCCChhHHHHHhHhhhhh---HHHHHHHHHHhhhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 572 ESIDSSGEEELAIQRLEITK---NDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQL 637 (689)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 637 (689)
.-|+-..++-...-+|+..+ .+|+.+|+++ +.+++ ++.+.+.++=..||.++++|++|+
T Consensus 56 ~vV~~~FddkVnqSALteqQ~kasELEKqLaaL-------rqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 56 GVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEI-------RRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred ceecchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665544 7888888876 45555 666677666678999999999998
No 172
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=49.55 E-value=52 Score=39.08 Aligned_cols=88 Identities=28% Similarity=0.337 Sum_probs=57.4
Q ss_pred hHhhhhhH-HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcc-------
Q 005588 585 QRLEITKN-DLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE----VGLS------- 652 (689)
Q Consensus 585 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~gl~------- 652 (689)
-|||--|. |.+.|.+ |-+|-.||.+|+=| +-|.||+|==+-.+.| -++|++||.|.+ +|=.
T Consensus 355 gkLdp~~aeeF~kRV~---~~ia~~~AEIekmK-~~Hak~m~k~k~~s~l---k~AE~~LR~a~~~p~~~G~E~WRlEGr 427 (669)
T PF08549_consen 355 GKLDPGKAEEFRKRVA---KKIADMNAEIEKMK-ARHAKRMAKFKRNSLL---KDAEKELRDAVEDPSETGPEIWRLEGR 427 (669)
T ss_pred cCCCHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHhhccHH---HHHHHHHHhccCCccccCccceeeccc
Confidence 34554443 4677777 56688999999865 5699999755544444 579999999886 3432
Q ss_pred --CCCcccCCC-ccCCccccchhHHHHHHH
Q 005588 653 --MSSGQFSSS-RGMDSKVCTDHKRFVSFL 679 (689)
Q Consensus 653 --~~~~~~~~~-~~~d~~~~~~lee~~~~~ 679 (689)
+...--+.+ ..++.|.|.-++||+.-+
T Consensus 428 l~~~~ee~~~~~~~~~~k~k~~VDDIV~eV 457 (669)
T PF08549_consen 428 LDTPDEEDESPVEQSENKPKYKVDDIVAEV 457 (669)
T ss_pred ccCCccCCCCcccccCccccccHHHHHHHH
Confidence 222221222 235677788899998754
No 173
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=48.46 E-value=91 Score=32.71 Aligned_cols=70 Identities=33% Similarity=0.416 Sum_probs=57.7
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005588 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLA---LEQDVSRLQEQLQAERDLRAALEVGL 651 (689)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~gl 651 (689)
.+||.|..-+..|.+||...-+.=..+|+-+++=++++.+...+ |++.|.+++..+|+.|.-.+-+|.-|
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999877777778888888777666666654 67899999999999999888888765
No 174
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.50 E-value=65 Score=38.95 Aligned_cols=73 Identities=29% Similarity=0.404 Sum_probs=34.9
Q ss_pred hHHHHHhHhhhh-------hHHHHHHHHHHhhhhhhhhhhH-------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 005588 579 EEELAIQRLEIT-------KNDLRHRIAKEARGNAILQASL-------ERRKQALHERRLALEQDV---SRLQEQLQAER 641 (689)
Q Consensus 579 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 641 (689)
--|.+|.||.+. .+||+++|..---+...|...| |.=...+|+-=.+.++|- +-|..+|..||
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777553 5677777642222212222111 111112222223333333 45555666666
Q ss_pred HHHHHHHhhc
Q 005588 642 DLRAALEVGL 651 (689)
Q Consensus 642 ~~~~~~~~gl 651 (689)
..|++||.=|
T Consensus 502 ~~R~~lEkQL 511 (697)
T PF09726_consen 502 RQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 175
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=44.18 E-value=1.1e+02 Score=26.12 Aligned_cols=55 Identities=24% Similarity=0.395 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 005588 593 DLRHRIAKEARGNAILQAS---LERRKQALHERRLALEQDVSRLQEQLQ-AERDLRAAL 647 (689)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 647 (689)
.|..||..=+-..+.||-. |..++.+|.+.+.+|+++..+|++.-. -..-+|+-|
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666644 444556777889999999988875433 233344443
No 176
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=44.12 E-value=1.2e+02 Score=29.59 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=48.3
Q ss_pred hhHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQAS---LERRKQALHERRLALEQDVSRLQEQLQAE 640 (689)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (689)
.++|+...-||.-..++..++.-=|+-=..|+|. +....+.|.+|+-++|.-+.+|++=|+..
T Consensus 22 ~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 22 LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777889998888888875444444445554 45567889999999999999999988754
No 177
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=44.09 E-value=35 Score=39.94 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=46.4
Q ss_pred CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeee----eeCcEEcCCCcc-eee------ccCCcceEEEEe-CCC--CC
Q 005588 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGS-VVV------REDKKLLTVLFP-DGR--DG 100 (689)
Q Consensus 35 k~WkKRWFVL~~~~L~YYKd~~~~~p~~~~e~~l----~L~~I~L~~~~s-v~~------~~~kk~~FvI~~-~~~--~~ 100 (689)
...+.-|+-|-+..|++-|-+.... +.+ +-..+.+..+.. ... ....++.|.++. ... ..
T Consensus 497 ~~~~~vylfLFnD~Llitk~k~~~~------f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~ 570 (695)
T KOG3523|consen 497 RLSKTVYLFLFNDLLLITKKKSEGS------FQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQ 570 (695)
T ss_pred cccceeeeeeecceeeEeeecCCCc------eEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCc
Confidence 3456778778777777776544321 111 111233332221 000 122346787765 221 23
Q ss_pred cEEEEEecChHHHHHHHHHHH
Q 005588 101 RAFTLKAETSEDLYEWKTALE 121 (689)
Q Consensus 101 rty~fqAdSeeE~~eWi~AL~ 121 (689)
..|.|+|++..|+++||.|+.
T Consensus 571 ~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 571 TELLLSAESQSDRQRWISALR 591 (695)
T ss_pred eeeeecCCchHHHHHHHHhcC
Confidence 479999999999999999986
No 178
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.08 E-value=1e+02 Score=34.68 Aligned_cols=69 Identities=29% Similarity=0.325 Sum_probs=44.1
Q ss_pred HhHhhhhhHHHHHHHHHHh------------------------hhhhhhhhhHHHHHHHHHH--------------HHHH
Q 005588 584 IQRLEITKNDLRHRIAKEA------------------------RGNAILQASLERRKQALHE--------------RRLA 625 (689)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~--------------~~~~ 625 (689)
|++||..|.-||.+...+| .-=.+|||.+||=+..|.- --.-
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~ 289 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD 289 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677888888887763322 1223678888875544321 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005588 626 LEQDVSRLQEQLQAERDLRAALEVGLS 652 (689)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~gl~ 652 (689)
.+.+.+|||+.|+.|-..|.||---|+
T Consensus 290 ~reen~rlQrkL~~e~erRealcr~ls 316 (552)
T KOG2129|consen 290 HREENERLQRKLINELERREALCRMLS 316 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345567999999999999988865443
No 179
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=41.55 E-value=69 Score=37.31 Aligned_cols=52 Identities=31% Similarity=0.443 Sum_probs=43.2
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 005588 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQA---LHERRLALEQDVSRLQEQL 637 (689)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 637 (689)
-|-+.||||-.++.+=--+|-|||-.||-|||| |+|+--.||.++.+++..+
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999988888999999999999997 6777777787777776544
No 180
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.01 E-value=1.3e+02 Score=31.57 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=25.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 605 NAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (689)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (689)
++.=+..|++..+.+.+|+.+||-++.+|.+.+++
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~ 121 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEK 121 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888888888888877655443
No 181
>PRK11637 AmiB activator; Provisional
Probab=40.47 E-value=2.1e+02 Score=32.31 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 608 LQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (689)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (689)
+++.|+..++.....-..|+++..+|+.+|.+
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555677777777777664
No 182
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.97 E-value=1.3e+02 Score=32.21 Aligned_cols=67 Identities=25% Similarity=0.346 Sum_probs=52.9
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005588 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALH----------ERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (689)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 650 (689)
-...|..-.+|+..|..-++.||.|+..+..-+.++. ..|..||.++..|+.+|..+.-.|..||.-
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~ 125 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQ 125 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHH
Confidence 3456777778889999999999999987765444444 456788999999999999999998888763
No 183
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.76 E-value=1.3e+02 Score=34.47 Aligned_cols=56 Identities=29% Similarity=0.407 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 593 DLRHRIAKEARGNAILQASLERRKQ-----------ALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (689)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (689)
+++.++++=.+.|..|++..||=++ ||.--|..|+++...|++++|+=+.+-.-|.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555444332 4444445555555555555554444444443
No 184
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=39.08 E-value=1e+02 Score=26.04 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 005588 593 DLRHRIAKEARGNAILQASLERRKQAL 619 (689)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (689)
.|+.+|-+=.--|..|++++|.||+-=
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~s 28 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQS 28 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788777778999999999999743
No 185
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=38.97 E-value=1.3e+02 Score=34.35 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=10.2
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhh
Q 005588 588 EITKNDLRHRIAKEARGNAILQA 610 (689)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~ 610 (689)
|..+++.|.-+ |-|-.||-+|.
T Consensus 502 eTll~niq~ll-kva~dnar~qe 523 (641)
T KOG3915|consen 502 ETLLTNIQGLL-KVAIDNARAQE 523 (641)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444444433 33445665553
No 186
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.92 E-value=1.2e+02 Score=30.44 Aligned_cols=63 Identities=29% Similarity=0.372 Sum_probs=47.8
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER--RL-ALEQDVSRLQEQLQAERDLRAALE 648 (689)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~ 648 (689)
+|+..+..+.+|+...+.=-+--|-|+-+.|.||.-+|++ |. +|++...-|+++|+ ++|.-|.
T Consensus 75 a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e---~lr~el~ 140 (203)
T KOG3433|consen 75 AICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILE---SLRWELA 140 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 6778888888888888776677788999999999988864 44 88888888887443 4555443
No 187
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.60 E-value=91 Score=36.20 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (689)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (689)
..+..+|+.++.+|++....|+++|++=+.-.++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 137 GSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667888999999999999999887644333344
No 188
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=37.43 E-value=19 Score=33.16 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=25.6
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHhhc-cCCCc--ccCCCcc--CCccccchhHHHHHHH
Q 005588 627 EQDVSRLQEQL----------QAERDLRAALEVGL-SMSSG--QFSSSRG--MDSKVCTDHKRFVSFL 679 (689)
Q Consensus 627 ~~~~~~~~~~~----------~~~~~~~~~~~~gl-~~~~~--~~~~~~~--~d~~~~~~lee~~~~~ 679 (689)
+..++||++.. ..|.-||.|-+.|+ ....| .|.+... ++.+.++-||.|..+.
T Consensus 11 ~~ni~kl~~~~~~~~vVp~SA~aEl~Lr~a~k~g~I~Y~pGd~~F~i~~~~~l~~~q~~~Le~I~~~v 78 (109)
T PF08438_consen 11 DENIEKLKEKYPDEPVVPTSAAAELALRKAAKAGLIDYIPGDSDFEITDDDKLSDKQKKALEKIRDNV 78 (109)
T ss_dssp HHHHHHHHHHHTT-EEEEE-HHHHHHHHS-SSS----S----------------------TTHHHHHH
T ss_pred HhHHHHHHHhCCCCceeeccHHHHHHHHHHHHCCCEEeCCCCCceEeecccccCHHHHHHHHHHHHHH
Confidence 56788888854 58999999999999 88888 6777777 8999999999999943
No 189
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.26 E-value=1.1e+02 Score=30.90 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=30.9
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (689)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (689)
...|++++....+|+.+|.++.++... + +.|.. +-++...|++.++.|+.+|+
T Consensus 75 ~~~~~~~~~~i~~l~~~i~~~~~~r~~---~-~eR~~-~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 75 QKEIEELEKKIEELEEKIEEAKKGREE---S-EEREE-LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc---c-HHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666555433321 1 34443 44555677777888887777
No 190
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=37.07 E-value=26 Score=41.07 Aligned_cols=154 Identities=14% Similarity=0.008 Sum_probs=93.9
Q ss_pred CCCCCCCcccccchHHHhhhCCC-----CcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHhhc-C-CccCCCCC
Q 005588 157 DKRPVKSLVVGRPILLALEDIDG-----GPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQ-G-KTEFSADE 229 (689)
Q Consensus 157 ~~~~~~~~vFG~pL~~ll~~~~~-----VP~iL~~~i~~Le~~Gl~~EGIFR~sG~~~~v~~L~~~ld~-g-~~~~~~~~ 229 (689)
...+.+..+|+ -|..+...... .+.-..+|..+....+....|.|+.+|. .+..+++.-+. + ++.+..+.
T Consensus 31 ~~~pl~~~~e~-~l~~~~~~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~e~e~~~~kie~~~d~ 107 (577)
T KOG4270|consen 31 VVFPLRKIIEV-ELPNIRKEEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLFRLPGA--KIDTLKEEEEECGMKIEQPTDQ 107 (577)
T ss_pred ccCcccchhhh-hhhHHHHHHHHHHhhhhhcchhhhhhhhhhhhhhhccccccCcc--hhhhhhchHHhhcCccccCcch
Confidence 33455566777 55554433221 2444578888888889999999999993 34444443333 3 36677778
Q ss_pred CcccchhhHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHH----HHHHHHHHHhccCChhHHHHHHHHHHHHHHhhcccC
Q 005588 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEA----RISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH 305 (689)
Q Consensus 230 Dvh~VAslLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~----ri~~l~~lIl~~LP~~N~~lL~~Ll~~L~~Va~~s~ 305 (689)
..+++.++++.+++.+ +|.++.-|+..+........+. ...+++. ...|..|+ +-+++.||... -
T Consensus 108 ~~~~~~~f~~~~~~~~--f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~---s~~~~~n~--vp~i~~l~~~~----~ 176 (577)
T KOG4270|consen 108 RHADHVTFDRKEGEYL--FLGLPVEFQPDYHRRALSASETVFGVSTEAMQL---SYDPRGNF--VPLILHLLQSG----R 176 (577)
T ss_pred hhhhhhhhhhhcchhh--hccchhhhccccccccccchhhhhcchHHhhhc---ccccCCCc--chhhhHhhhhh----h
Confidence 8999999999999998 7777666655443322211111 2334443 45677777 66666666654 3
Q ss_pred CCCCCccchhhhhcccccC
Q 005588 306 ENRMTPSAVAACMAPLLLR 324 (689)
Q Consensus 306 ~NkMta~NLAivfaP~Llr 324 (689)
.+.|.=-+...+|.++--.
T Consensus 177 l~~e~Gl~eEGlFRi~~~~ 195 (577)
T KOG4270|consen 177 LLLEGGLKEEGLFRINGEA 195 (577)
T ss_pred hhhhcCccccceeccCCCc
Confidence 4445555555666555443
No 191
>PRK11637 AmiB activator; Provisional
Probab=36.86 E-value=1.7e+02 Score=32.99 Aligned_cols=7 Identities=29% Similarity=0.054 Sum_probs=2.9
Q ss_pred CcccCCC
Q 005588 655 SGQFSSS 661 (689)
Q Consensus 655 ~~~~~~~ 661 (689)
.|.|..|
T Consensus 304 ~g~~~~P 310 (428)
T PRK11637 304 RGQAFWP 310 (428)
T ss_pred CCCCccC
Confidence 3444434
No 192
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=36.74 E-value=1.1e+02 Score=28.60 Aligned_cols=48 Identities=35% Similarity=0.507 Sum_probs=29.4
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (689)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (689)
.+.+|+..|..|..-|.+=.+.|..+++ ...+-..|++++..|+...+
T Consensus 38 el~~l~~~r~~l~~Eiv~l~~~~e~~~~--------~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKLMEENEELRA--------LKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777766666666643 33344455566665555443
No 193
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=35.73 E-value=2.5e+02 Score=25.91 Aligned_cols=15 Identities=40% Similarity=0.756 Sum_probs=4.3
Q ss_pred hHhhhhhHHHHHHHH
Q 005588 585 QRLEITKNDLRHRIA 599 (689)
Q Consensus 585 ~~~~~~~~~~~~~~~ 599 (689)
.+||+.++++|++.+
T Consensus 5 ~~l~as~~el~n~La 19 (107)
T PF09304_consen 5 EALEASQNELQNRLA 19 (107)
T ss_dssp ---------HHHHHH
T ss_pred HHHHhhHHHHHHHHH
Confidence 567888888888763
No 194
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=35.41 E-value=72 Score=26.23 Aligned_cols=31 Identities=32% Similarity=0.505 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 619 LHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (689)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (689)
|.||=-+|.-+++||.-||-+-.+-|.|-|+
T Consensus 30 l~eRIalLq~EIeRlkAe~~kK~~srsAAea 60 (65)
T COG5509 30 LEERIALLQAEIERLKAELAKKKASRSAAEA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Confidence 4555556666788888899999999998886
No 195
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=35.25 E-value=2.6e+02 Score=32.18 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=28.6
Q ss_pred HHHhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 599 AKEARGNA-ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (689)
Q Consensus 599 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (689)
|.+-|.|. .+|+.++|| ++|+|...++.|+|+|.+--..+
T Consensus 274 A~~~~~~~~~~~~~~~~r---------~~~~~~~~~~~Q~Q~~~~~~~~~ 314 (659)
T KOG4140|consen 274 APEDNNNRKFLNKRLSER---------EFDPDIHCGVIQLQTKKPCTRSL 314 (659)
T ss_pred chhhhhhHHHHHHHHHHh---------hhhhhhhhhhHhhccCCCcchhH
Confidence 33445443 466766655 78999999999999998765543
No 196
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=34.46 E-value=2.1e+02 Score=24.17 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=33.6
Q ss_pred hHhhhhhHHHHHHHHHHhhhhhhhhhhHHH----H------HHHHHHHHHHHHHHHHHHHHHHH
Q 005588 585 QRLEITKNDLRHRIAKEARGNAILQASLER----R------KQALHERRLALEQDVSRLQEQLQ 638 (689)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 638 (689)
++||+.+..||.|+.-=.+-|.+.|.-+.+ | =...++.=.-|-.+|..|+.+|+
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999997777777776654321 2 22233333345556666666654
No 197
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=33.93 E-value=2.5e+02 Score=29.26 Aligned_cols=46 Identities=28% Similarity=0.383 Sum_probs=30.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005588 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (689)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 651 (689)
+.++.--..|.+.+.+....|..+|..|++.+..||.-|..-|.-+
T Consensus 106 ~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i 151 (247)
T PF06705_consen 106 EEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENI 151 (247)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556666666666777777777777777777776666544
No 198
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.74 E-value=2.1e+02 Score=32.42 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 005588 594 LRHRIAKEARGNAILQASLERRKQALHERRL---ALEQDVSRLQEQLQAERDLRAAL 647 (689)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 647 (689)
|...+.+--|-.+.|+++|+.+.+-|.|.+. +|++.++++..|.-++|.-|+|-
T Consensus 201 l~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~~aa~ 257 (420)
T COG4942 201 LAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAA 257 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667788899999998888888875 79999999998887888777743
No 199
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=33.67 E-value=52 Score=27.60 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 005588 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (689)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~ 653 (689)
+|-.+++-++.|+.+|++|...|.++|.=+.+
T Consensus 3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~ 34 (72)
T cd00089 3 VRSKLQSRLERLEKELSIELKVKEGAENLLRL 34 (72)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568899999999999999999999986543
No 200
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=33.23 E-value=3.4e+02 Score=23.96 Aligned_cols=79 Identities=13% Similarity=0.070 Sum_probs=46.0
Q ss_pred cEEEEEEEe----C-CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCC--cceEEEEeCCCCCcEEEEEecC
Q 005588 37 WKKRWFILT----R-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDK--KLLTVLFPDGRDGRAFTLKAET 109 (689)
Q Consensus 37 WkKRWFVL~----~-~~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~k--k~~FvI~~~~~~~rty~fqAdS 109 (689)
.+.||.+|. + ..+..++-+.... +.+. .-..-+|.....+...... ...|.++. +++|+..|.+
T Consensus 3 kK~r~Lclsv~~~~~~~v~l~k~K~~~~----g~f~-i~ktW~L~eL~~I~~~~~~~~~~~F~l~~----~k~y~W~a~s 73 (91)
T PF15277_consen 3 KKPRYLCLSVTNSPRIQVRLHKVKQNDN----GSFQ-IGKTWDLDELKAIDGINPDKDTPEFDLTF----DKPYYWEASS 73 (91)
T ss_dssp EEEEEEEEEEETTETTEEEEEEEEE-CC----S-EE-EEEEEEGGG--EEEE-SSS--TTEEEEES----SSEEEEEESS
T ss_pred cccEEEEEEEecCCceEEEEEEEEecCC----CcEE-EeeEEehhhceeeeeecCCCCCcCEEEEE----CCCcEEEeCC
Confidence 477887664 1 2366666554332 1111 1122344443333222222 35688887 6899999999
Q ss_pred hHHHHHHHHHHHHHH
Q 005588 110 SEDLYEWKTALELAL 124 (689)
Q Consensus 110 eeE~~eWi~AL~~ai 124 (689)
..|+..++..|-+.-
T Consensus 74 ~~Ek~~Fi~~L~k~~ 88 (91)
T PF15277_consen 74 AKEKNTFIRSLWKLY 88 (91)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987654
No 201
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=33.10 E-value=1.8e+02 Score=26.34 Aligned_cols=61 Identities=26% Similarity=0.260 Sum_probs=48.1
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhhh----hhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 005588 584 IQRLEITKNDLRHRIAKEARGNAILQ----ASLERRKQALHERR----------LALEQDVSRLQEQLQAERDLR 644 (689)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 644 (689)
|.-++.+=+++|.|||.==|-=++|= ++.|.||-|=++.= -.+|+++..||+||-.+.|-=
T Consensus 1 iA~~di~l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~qL~~~ldeY 75 (99)
T PF11083_consen 1 IAELDIKLTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQLGLYLDEY 75 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999987666666776 88999999877753 247889999999998887643
No 202
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=32.89 E-value=3.1e+02 Score=25.44 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=31.8
Q ss_pred CcceEEEEeCCCCCcEEEEEecChHHHHHHHHHHHHHHhhC
Q 005588 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (689)
Q Consensus 87 kk~~FvI~~~~~~~rty~fqAdSeeE~~eWi~AL~~ai~~a 127 (689)
..+.|.+.+. ..+.-|.|++..+.+.|++.|+..+..+
T Consensus 69 ~~~yfgL~T~---~G~vEfec~~~~~~k~W~~gI~~mL~~~ 106 (110)
T PF08458_consen 69 ERRYFGLKTA---QGVVEFECDSQREYKRWVQGIQHMLSQV 106 (110)
T ss_pred eEEEEEEEec---CcEEEEEeCChhhHHHHHHHHHHHHHHh
Confidence 4567877763 7789999999999999999999998654
No 203
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=32.09 E-value=4.7e+02 Score=29.35 Aligned_cols=97 Identities=24% Similarity=0.371 Sum_probs=54.1
Q ss_pred HHHHHhHhhhhhH-----HHHHHHHHHhhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q 005588 580 EELAIQRLEITKN-----DLRHRIAKEARGN-AILQASLERRKQALHERRLALEQDVSRLQEQL----------QAERDL 643 (689)
Q Consensus 580 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~ 643 (689)
.++..|+||..+. +...+..|||-+- |.|||---|.-|-.-|-.-||.++-..|-.+| +-+-+.
T Consensus 302 s~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q~~v 381 (442)
T PF06637_consen 302 SDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQLAV 381 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777665 5556666666543 57888766665433333344444444443333 222222
Q ss_pred H-HHHHhhc----------cCCCcccCCCccCCccccchhHHHHHHH
Q 005588 644 R-AALEVGL----------SMSSGQFSSSRGMDSKVCTDHKRFVSFL 679 (689)
Q Consensus 644 ~-~~~~~gl----------~~~~~~~~~~~~~d~~~~~~lee~~~~~ 679 (689)
+ .||+.-. .-..|+.+.|..||. |-|||+-.-+
T Consensus 382 ~~saLdtCikaKsq~~~p~~r~~~p~pnp~pidp---~~leefkrri 425 (442)
T PF06637_consen 382 KTSALDTCIKAKSQPMTPGPRPVGPVPNPPPIDP---ASLEEFKRRI 425 (442)
T ss_pred hhhHHHHHHHhccCCCCCCCCCCCCCCCCCCCCh---HHHHHHHHHH
Confidence 2 2455321 134578899999996 6688876544
No 204
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=31.79 E-value=27 Score=27.69 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=18.8
Q ss_pred CCCcEEEEEEEeCCeEEEEcC
Q 005588 34 WKSWKKRWFILTRTSLVFFKN 54 (689)
Q Consensus 34 ~k~WkKRWFVL~~~~L~YYKd 54 (689)
...|.|+|..+.+++|.+||=
T Consensus 27 Vr~wEKKWVtv~dtslriyKW 47 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYKW 47 (52)
T ss_pred HHHHhhceEEeccceEEEEEE
Confidence 567999999999999999974
No 205
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=31.68 E-value=1.1e+02 Score=27.13 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (689)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (689)
+.-++|=..|+..-.+|.++|.+|+-||..||.
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888999999999999999999999986
No 206
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=31.62 E-value=1.1e+02 Score=27.91 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005588 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (689)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 651 (689)
...+.++..|.+++..|++..++||++++.=..+.+.++.+|
T Consensus 75 ~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (116)
T cd04769 75 LPWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKDAL 116 (116)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 455778899999999999999999999888777777776654
No 207
>KOG4095 consensus Uncharacterized conserved protein (tumor-specific protein BCL7 in humans) [General function prediction only]
Probab=31.53 E-value=16 Score=35.29 Aligned_cols=25 Identities=32% Similarity=0.694 Sum_probs=20.7
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCC
Q 005588 34 WKSWKKRWFILTRTSLVFFKNDPSA 58 (689)
Q Consensus 34 ~k~WkKRWFVL~~~~L~YYKd~~~~ 58 (689)
++.|.|+|+.+.++.|.+||=-+-+
T Consensus 28 VRrWEKKwVtvgDTslRIyKWVPVt 52 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYKWVPVT 52 (165)
T ss_pred HHHHhhheEeecccceEEEEeeecc
Confidence 5679999999999999999864433
No 208
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=31.27 E-value=2.5e+02 Score=28.52 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=27.9
Q ss_pred hHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHH
Q 005588 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERR 615 (689)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (689)
+.|..--+||+-|.-+...|+.--.-=+-||+-|..+
T Consensus 102 ~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~ 138 (192)
T PF11180_consen 102 DVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIA 138 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777899999999999976554455688877653
No 209
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=30.63 E-value=1.7e+02 Score=27.97 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=7.1
Q ss_pred HhHhhhhhHHHHHHHHH
Q 005588 584 IQRLEITKNDLRHRIAK 600 (689)
Q Consensus 584 ~~~~~~~~~~~~~~~~~ 600 (689)
|.+|+..-..|+.+++.
T Consensus 68 ~~~l~~~~~rL~~~~~~ 84 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEE 84 (151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 210
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=30.48 E-value=1.9e+02 Score=27.56 Aligned_cols=32 Identities=31% Similarity=0.398 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 612 LERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (689)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (689)
.++|.+.|..++..|.+....++.+++.++.-
T Consensus 78 ~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~ 109 (158)
T PF03938_consen 78 RQKRQQELQQKEQELQQFQQQAQQQLQQEEQE 109 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888888888888887753
No 211
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=29.98 E-value=3.5e+02 Score=23.63 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=42.8
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHh--------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 580 EELAIQRLEITKNDLRHRIAKEA--------RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (689)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (689)
.+..|..|+..+.+++..+.... ......-..|+.+...+......++++|.++++.|.+-+--+..+|.
T Consensus 17 ~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~ 94 (123)
T PF02050_consen 17 AEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEK 94 (123)
T ss_dssp HHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777766665544 11222334567777777888888888888888888766555555543
No 212
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=29.90 E-value=76 Score=32.36 Aligned_cols=31 Identities=39% Similarity=0.469 Sum_probs=26.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 606 AILQASLERRKQALHERRLALEQDVSRLQEQ 636 (689)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (689)
+.|||--|||-+.=+--|.-|||++..|+-|
T Consensus 13 ~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~q 43 (205)
T PF12240_consen 13 AQLQAACEKREQLERRLRTRLERELESLRAQ 43 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999998888899999999776544
No 213
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.68 E-value=98 Score=26.84 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=29.4
Q ss_pred HHhHhhhhhHHHHHHH---HHHhhhhh----hhhhhHHHHHHHHHHH
Q 005588 583 AIQRLEITKNDLRHRI---AKEARGNA----ILQASLERRKQALHER 622 (689)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~ 622 (689)
-|+|||.-|..+...| -.||||+- ++-.=+.-||+.-+||
T Consensus 22 rIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er 68 (85)
T COG3750 22 RIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAER 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHH
Confidence 4899999999999887 56899884 4445555666665555
No 214
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.36 E-value=2e+02 Score=33.23 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=28.0
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (689)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (689)
++.....+|.++..-.-.++.|++.||...++..|++..|++--.+|..|.
T Consensus 65 ~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F 115 (475)
T PRK10361 65 LNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQF 115 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444445566666666666666666666665555555543
No 215
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=28.81 E-value=1.7e+02 Score=26.36 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (689)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (689)
.+++.|=+|.+.+.|+|.-.| .||+-|-.=|+-|+||.+
T Consensus 43 ~mH~~LL~~i~~~ee~R~~~E----~lQdkL~qi~eAR~AlDa 81 (96)
T PF12210_consen 43 AMHPQLLKYIQEQEEKRVYYE----GLQDKLAQIKEARAALDA 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 356778889999999998776 589999899999999976
No 216
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=28.13 E-value=4.5e+02 Score=24.62 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=49.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhh---ccC----CC-cccCCCccCCccccch
Q 005588 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAER--------DLRAALEVG---LSM----SS-GQFSSSRGMDSKVCTD 671 (689)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g---l~~----~~-~~~~~~~~~d~~~~~~ 671 (689)
+++.|+....++.. +....++|+.|-.+.++|. .||+.|-+| |.+ +. +..+.+.++|.-+.++
T Consensus 12 ~~~~~~~~~~~i~~-~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~~RL~v~a~C~~~~~~~~a~~~~d~~~a~ 90 (125)
T PF03245_consen 12 AQAALEAANAAIED-MQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGNKRLRVKATCPAVPETTSAGGVGDAARAR 90 (125)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCceEEEeccCCCCCCCCCCCCCCCccccc
Confidence 34444444444333 5567788888888888886 489999999 211 12 3556788999889999
Q ss_pred hHHHHHHHhhhc
Q 005588 672 HKRFVSFLFLDL 683 (689)
Q Consensus 672 lee~~~~~~~~~ 683 (689)
|-+-|---+++|
T Consensus 91 L~~~a~~~~~~l 102 (125)
T PF03245_consen 91 LDPAAARNYFRL 102 (125)
T ss_pred CCHHHHHHHHHH
Confidence 876665544443
No 217
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.10 E-value=1.6e+02 Score=27.38 Aligned_cols=41 Identities=27% Similarity=0.390 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 005588 610 ASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVG 650 (689)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g 650 (689)
+.|+.|++.+..+--.||+.-.+|++++.. +..||.+|..|
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 568999999999999999999999999974 67788888764
No 218
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=28.00 E-value=2.5e+02 Score=32.05 Aligned_cols=44 Identities=20% Similarity=0.371 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 005588 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (689)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~ 652 (689)
++.++.|.+.+.....++.+.++.++++++.=+.+..+++.|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 203 (457)
T TIGR01000 160 NDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTK 203 (457)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55566777888888888888888888888888888888888864
No 219
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.84 E-value=2.8e+02 Score=26.01 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 608 LQASLERRKQALHERRLALEQDVSRLQE 635 (689)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (689)
.++.|+.-+....++|..||++++.++.
T Consensus 85 a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 85 AKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555544443
No 220
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=27.76 E-value=1.9e+02 Score=34.68 Aligned_cols=54 Identities=28% Similarity=0.279 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 005588 593 DLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQ--LQAERDLRAAL 647 (689)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 647 (689)
.+|.+|+.----|+.+||++.--+..||- |-+|+||-+|-|++ .|.=-|||.+|
T Consensus 541 ~sr~~~~~le~~~~a~qat~d~a~~Dlqk-~nrlkQdear~~~~~lvqqv~dLR~~L 596 (961)
T KOG4673|consen 541 NSRALAAALEAQALAEQATNDEARSDLQK-ENRLKQDEARERESMLVQQVEDLRQTL 596 (961)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666754444578889988877777764 34566776665554 34445666655
No 221
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.67 E-value=1.8e+02 Score=33.45 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=26.6
Q ss_pred HHhHhhhhhHHHHHHHH---HHhhhhhhhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 583 AIQRLEITKNDLRHRIA---KEARGNAILQA-----------SLERRKQALHERRLALEQDVSRLQEQLQ 638 (689)
Q Consensus 583 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (689)
.|-++-.++.+|+.-+. .-.++|..||+ -|+.=.+.|++.+.+|.+++.+||.+|+
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~ 133 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLID 133 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554442 22345555543 3333334455455555555555555443
No 222
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.37 E-value=74 Score=35.64 Aligned_cols=41 Identities=34% Similarity=0.439 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhccCC
Q 005588 614 RRKQALHERRLALE-------QDVSRLQEQLQAERDLRAALEVGLSMS 654 (689)
Q Consensus 614 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~gl~~~ 654 (689)
.|.+.+.-+|.|=| ..+--|||||++||-+++.||--|-.-
T Consensus 420 ~~r~~~~~~l~a~ehv~e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ 467 (542)
T KOG0993|consen 420 QRRTSLQQELDASEHVQEDLVKEIQSLQEQLEKERQSEQELEWQLDDD 467 (542)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444432 344579999999999999999766443
No 223
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.25 E-value=2.4e+02 Score=30.02 Aligned_cols=38 Identities=34% Similarity=0.501 Sum_probs=24.9
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 005588 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALE 627 (689)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (689)
+++.+++.|-+--. .-|.|-+.+||||-.|..-|.-||
T Consensus 120 ~~q~~~~~Lnnvas----dea~L~~Kierrk~ElEr~rkRle 157 (338)
T KOG3647|consen 120 RLQSSRAQLNNVAS----DEAALGSKIERRKAELERTRKRLE 157 (338)
T ss_pred HHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544333 336788999999988877666665
No 224
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.73 E-value=75 Score=33.52 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHH
Q 005588 617 QALHERRLALEQDVSRL---QEQLQAE 640 (689)
Q Consensus 617 ~~~~~~~~~~~~~~~~~---~~~~~~~ 640 (689)
+.|.+||.||+.+|+.| ++|+++|
T Consensus 7 ~eL~qrk~~Lq~eIe~LerR~~ri~~E 33 (283)
T PF11285_consen 7 KELEQRKQALQIEIEQLERRRERIEKE 33 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555533 4444444
No 225
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=26.72 E-value=3.3e+02 Score=26.12 Aligned_cols=82 Identities=20% Similarity=0.283 Sum_probs=33.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH--hhccCCCcccCCCccCCccccchhHHHHHHHh
Q 005588 605 NAILQASLERRKQALHERRLALEQDVSRLQEQLQA--ERDLRAALE--VGLSMSSGQFSSSRGMDSKVCTDHKRFVSFLF 680 (689)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~gl~~~~~~~~~~~~~d~~~~~~lee~~~~~~ 680 (689)
++.++..+.+=++.+...--.|++.++.|+..|+. |.. |..|- -=+.+..|.++.-.+.......+.+.|..+|
T Consensus 23 ~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~-r~e~~k~Ks~~l~~G~v~~R~~~~~~~~~~~~~vl~~L- 100 (149)
T PF07352_consen 23 EAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEAN-RDELTKKKSLKLPFGTVGFRKSTPKVKVRDEEKVLEWL- 100 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT-HHHH-----EE-SS-EE-----------T-HHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHhcccceEEEcCCeeEEEEecCCcccCCCHHHHHHHH-
Confidence 34445555555555555555555555555555543 111 11111 1146778887765555554444777777766
Q ss_pred hhcccccc
Q 005588 681 LDLQLHKY 688 (689)
Q Consensus 681 ~~~~~~~~ 688 (689)
-...|++|
T Consensus 101 k~~gl~~~ 108 (149)
T PF07352_consen 101 KENGLKEF 108 (149)
T ss_dssp HHCT-GCC
T ss_pred HHcCchhh
Confidence 45555554
No 226
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.00 E-value=3.8e+02 Score=27.98 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=18.7
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 005588 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALH 620 (689)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (689)
..+.+|...-..++.+|...-+.-+.+++.|+.|++.|.
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455554444444445555555554443
No 227
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.53 E-value=2.2e+02 Score=35.13 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=30.0
Q ss_pred hHHHHHhHhhhhhHHHHHHH---HHHhhhhhhhhhhHHHHHHHHHHHHH
Q 005588 579 EEELAIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRL 624 (689)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (689)
+=|..|++||..+.+++.+. +++.+.-..+++.|+++++.|.++|.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 565 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEED 565 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999988887765 33444445555566665555555444
No 228
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=25.43 E-value=1.1e+02 Score=32.54 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 005588 589 ITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALE 627 (689)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (689)
++|.+.-.++ +..|.| ||++||.||+-|.|-|+.++
T Consensus 101 aAk~e~E~~~-~lLke~--l~seleeKkrkieeeR~smD 136 (291)
T KOG4466|consen 101 AAKKEYESKK-KLLKEN--LISELEEKKRKIEEERLSMD 136 (291)
T ss_pred HHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHhhhh
Confidence 3444444433 345554 89999999999999998875
No 229
>PF15463 ECM11: Extracellular mutant protein 11
Probab=25.25 E-value=2.2e+02 Score=27.17 Aligned_cols=63 Identities=19% Similarity=0.430 Sum_probs=50.0
Q ss_pred CCCCcccCCCChh-----HHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 567 KTSSVESIDSSGE-----EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQ 636 (689)
Q Consensus 567 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (689)
.++|++.-+.+|+ --..|+||-.++..++.+++ ++.+-+.+|-.||..+...|.+.+.+++..
T Consensus 67 s~ls~~eWe~~Gd~~l~qf~~l~~kl~~~R~~~r~~~~-------~fe~eI~~R~eav~~~~~~l~~kL~~mk~~ 134 (139)
T PF15463_consen 67 SNLSFDEWEEAGDWFLEQFSELMQKLKEARRKLRKKFA-------VFEDEINRRAEAVRAQGEQLDRKLEKMKEG 134 (139)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666665 34578888888888887775 678889999999999999999999998865
No 230
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.11 E-value=1e+02 Score=36.05 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=0.0
Q ss_pred hHHHHHhHhhhhhHHHHHHH---HHHhhhhhhhhhhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 579 EEELAIQRLEITKNDLRHRI---AKEARGNAILQASLERRK--------------QALHERRLALEQDVSRLQEQLQAER 641 (689)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (689)
+-...|..||.....|+.+. .++.-+...+++.+|+-+ +....++..+++++..|.+||+.-+
T Consensus 217 e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~q 296 (546)
T PF07888_consen 217 EARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQ 296 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhccCCCcccCCCccCCccccchh
Q 005588 642 DLRAALEVGLSMSSGQFSSSRGMDSKVCTDH 672 (689)
Q Consensus 642 ~~~~~~~~gl~~~~~~~~~~~~~d~~~~~~l 672 (689)
+.-.|-+--..+-...++.-..+=++|-|||
T Consensus 297 e~lqaSqq~~~~L~~EL~~~~~~RDrt~aeL 327 (546)
T PF07888_consen 297 EQLQASQQEAELLRKELSDAVNVRDRTMAEL 327 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 231
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.99 E-value=1.9e+02 Score=26.32 Aligned_cols=39 Identities=31% Similarity=0.483 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 005588 609 QASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAAL 647 (689)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 647 (689)
-+.|+.|.+.+.++.-+||+....|++++.. ++.+|.+|
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888888888888888888888764 55566655
No 232
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.69 E-value=2.8e+02 Score=29.58 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=27.6
Q ss_pred HHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 005588 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE 621 (689)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (689)
.+|+.+...-..++..|..=....+.|.+.+||||+.|.-
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER 208 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELER 208 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666667778899999999887643
No 233
>PF08597 eIF3_subunit: Translation initiation factor eIF3 subunit; InterPro: IPR013906 This shows protein subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae (Baker's yeast) protein Q05775 from SWISSPROT has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p []. ; PDB: 3BPJ_D 2KRB_B.
Probab=24.48 E-value=47 Score=34.67 Aligned_cols=54 Identities=26% Similarity=0.318 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHh-h-c---cCCCcccCCCccCCccccchhHHHHHHHhhhcccc
Q 005588 633 LQEQLQAERDLRAALEV-G-L---SMSSGQFSSSRGMDSKVCTDHKRFVSFLFLDLQLH 686 (689)
Q Consensus 633 ~~~~~~~~~~~~~~~~~-g-l---~~~~~~~~~~~~~d~~~~~~lee~~~~~~~~~~~~ 686 (689)
.+++||.|-||+.|-+. | + .-..+....-.+|..+|++|.++++.-|.--|.-|
T Consensus 99 r~q~~~eeaDl~~A~dLFGg~~~~~~~~~~~~~l~~~~pkTk~DF~~~~~~l~~kl~~~ 157 (245)
T PF08597_consen 99 RQQRLQEEADLANAKDLFGGVPADPTKDDDSDSLDSFNPKTKEDFEEFAEALAKKLTSF 157 (245)
T ss_dssp -------------------------------SSTTT----SHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhhhHHHHHHHhcccccccccCCCcccccccCCCCHHHHHHHHHHHHHHHHcc
Confidence 45669999999988774 1 1 01223344556788999999999998876555443
No 234
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.33 E-value=2.7e+02 Score=34.00 Aligned_cols=17 Identities=12% Similarity=0.575 Sum_probs=13.3
Q ss_pred HHhHhhhhhHHHHHHHH
Q 005588 583 AIQRLEITKNDLRHRIA 599 (689)
Q Consensus 583 ~~~~~~~~~~~~~~~~~ 599 (689)
-|+|++.++.++|.|+.
T Consensus 552 Yi~~~~~ar~ei~~rv~ 568 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVK 568 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47788888888888873
No 235
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=24.30 E-value=3.5e+02 Score=24.62 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=26.9
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 005588 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALH 620 (689)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (689)
|.+|.+....+..-|......|..|++.+..=.+++.
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~ 63 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVE 63 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777667777888888889999887775544443
No 236
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.27 E-value=2.6e+02 Score=29.45 Aligned_cols=41 Identities=24% Similarity=0.414 Sum_probs=24.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHH
Q 005588 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHER---RLALEQDVSRLQE 635 (689)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 635 (689)
.++.|+-|..|. .+|+.+|+..++|--. |..|+++|..|++
T Consensus 148 ~~slK~vlk~R~--------~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~ 191 (243)
T cd07666 148 SETLMGVIKRRD--------QIQAELDSKVEALANKKADRDLLKEEIEKLED 191 (243)
T ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 355666666664 5677777776666432 2456666666655
No 237
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=24.07 E-value=2.8e+02 Score=23.63 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=45.1
Q ss_pred hHHHHhhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHhccCChhHHHHHHHH
Q 005588 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRI 293 (689)
Q Consensus 237 lLK~fLReLPePLlp~~ly~~~i~~~~~~~~e~ri~~l~~lIl~~LP~~N~~lL~~L 293 (689)
+||.+|+.|-..--+...-..|...+..-+..+-..+=+.||.+.+|+....-|..+
T Consensus 1 ~LK~ii~~Lh~G~~~e~vk~~F~~~~~~Vs~~EI~~~Eq~Li~eG~~~eeiq~LCdv 57 (71)
T PF04282_consen 1 ILKEIIKRLHEGEDPEEVKEEFKKLFSDVSASEISAAEQELIQEGMPVEEIQKLCDV 57 (71)
T ss_pred CHHHHHHHHhCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCHHHHHHHhHH
Confidence 578889998888777777788888888888888888888888889998875554443
No 238
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=23.43 E-value=2.9e+02 Score=24.52 Aligned_cols=40 Identities=33% Similarity=0.390 Sum_probs=25.9
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 005588 597 RIAKEARGNAILQASLERRKQALHE--RRLALEQDVSRLQEQL 637 (689)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 637 (689)
++++=|-+|--|+..+. |=+.+++ -|-+|=+.|+.|++||
T Consensus 45 evtr~A~EN~rL~ee~r-rl~~f~~~gerE~l~~eis~L~~~l 86 (86)
T PF12711_consen 45 EVTRFAMENIRLREELR-RLQSFYVEGEREMLLQEISELRDQL 86 (86)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHhhC
Confidence 44666677777777663 4455555 5667777777777764
No 239
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.37 E-value=1.5e+03 Score=28.15 Aligned_cols=135 Identities=10% Similarity=0.176 Sum_probs=82.1
Q ss_pred CcccccchHHHhhhCCCCcHHHHHHHHHHHhc--C---CCcCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhh
Q 005588 163 SLVVGRPILLALEDIDGGPSFLEKALRFLEKF--G---TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDC 237 (689)
Q Consensus 163 ~~vFG~pL~~ll~~~~~VP~iL~~~i~~Le~~--G---l~~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAsl 237 (689)
...|-.+|-.++.....+=.++.++|..+... + ++.+-.|-.+-+...++.++-.+-.. +....+++.|--=
T Consensus 320 ~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~---La~esni~~ILrE 396 (968)
T KOG1060|consen 320 VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSN---LANESNISEILRE 396 (968)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHH---HhhhccHHHHHHH
Confidence 34455566566655566777888888777642 2 44566777888888888887655432 1112233333333
Q ss_pred HHHHhhhCCCC-----------------CCChhhHHHHHHHHhcCCH---HHHHHHHHHHHhccCChhHHHHHHHHHHHH
Q 005588 238 VKHVLRELPSS-----------------PVPASCCTALLEAYKIDRK---EARISAMRSAILETFPEPNRRLLQRILRMM 297 (689)
Q Consensus 238 LK~fLReLPeP-----------------Llp~~ly~~~i~~~~~~~~---e~ri~~l~~lIl~~LP~~N~~lL~~Ll~~L 297 (689)
|+.|.+.-+.. =++..+..-++......+. .+.+..||.+| +.=|..|..+|.+|.++|
T Consensus 397 ~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll-q~~p~~h~~ii~~La~ll 475 (968)
T KOG1060|consen 397 LQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL-QKDPAEHLEILFQLARLL 475 (968)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhChHHHHHHHHHHHHHh
Confidence 34444443321 1333455555555554442 45577888866 789999999999999988
Q ss_pred HHhh
Q 005588 298 HTIS 301 (689)
Q Consensus 298 ~~Va 301 (689)
..+.
T Consensus 476 dti~ 479 (968)
T KOG1060|consen 476 DTIL 479 (968)
T ss_pred hhhh
Confidence 6543
No 240
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=23.33 E-value=1.7e+02 Score=28.01 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=30.6
Q ss_pred HHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 005588 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQD 629 (689)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (689)
|+.++-||.+..-|..-|.+--...+..|+..+.|..+|.+-|..|+++
T Consensus 20 e~~~e~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~m~~~ 68 (135)
T PRK10947 20 ECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIAD 68 (135)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455666666666666665555555666666666666666666666654
No 241
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=23.33 E-value=3.8e+02 Score=32.42 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=26.6
Q ss_pred hhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 005588 605 NAILQASLERRKQALHERR---LALEQDVSRLQEQLQAERDLRAALEVGL 651 (689)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~gl 651 (689)
++.|+..++.|+++..+++ ..|++++.+.++..++=+..+.-|+.-+
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~il 161 (779)
T PRK11091 112 IAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLLRSFL 161 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777666554 4577777766554433333333333333
No 242
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.99 E-value=1.3e+02 Score=27.86 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 610 ASLERRKQALHERRLALEQDVSRLQEQLQA 639 (689)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (689)
..++||.+.|.++...|+++..++++|+..
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~ 119 (129)
T cd00584 90 EFLDKKIEELTKQIEKLQKELAKLKDQINT 119 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888764
No 243
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=22.85 E-value=3.9 Score=48.76 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=54.6
Q ss_pred EEEEeeeeeecCCCCCCcEEEEEEEeCCe-EEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC---CcceEEEEe
Q 005588 20 FKSGPLFISSKGIGWKSWKKRWFILTRTS-LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED---KKLLTVLFP 95 (689)
Q Consensus 20 ~KeG~L~l~KkG~~~k~WkKRWFVL~~~~-L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~---kk~~FvI~~ 95 (689)
++.| ...+...-+..|+.|++.+++.. ++|-+..+... ...++++... +..... ...|.+|++
T Consensus 3 ~~rg--l~~~~~ne~Ea~k~r~~~~k~~~~~~vakTa~g~~----------~~~~d~t~a~-~~eSs~~n~~~sf~vi~~ 69 (1099)
T KOG1170|consen 3 VTRG--LDNDVDNEREAWKQSILRAKDRMPEKVAKTASGPL----------FALLDLTSAH-VAESSTNNPRPSFCVITP 69 (1099)
T ss_pred cccc--cccccccHHHHHHHHHHHHHHHHHHHHHhccCCcc----------HHHHhccccc-ccccccCCCCCCeeEecc
Confidence 4455 22233444667999999998875 66666554321 1223333322 111122 223335554
Q ss_pred CCCCCcEEEEEecChHHHHHHHHHHHHHHh
Q 005588 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (689)
Q Consensus 96 ~~~~~rty~fqAdSeeE~~eWi~AL~~ai~ 125 (689)
.+...++|++..+|..|+.+++...+
T Consensus 70 ----~rk~r~~adn~ke~e~wi~~~kt~q~ 95 (1099)
T KOG1170|consen 70 ----VRKHRLCADNRKEMEKWINQSKTPQH 95 (1099)
T ss_pred ----cHHhhhhccchhHHHHhhccccchhh
Confidence 78999999999999999999998764
No 244
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.59 E-value=4.3e+02 Score=23.34 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=34.8
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQ 636 (689)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (689)
-+.+++||+..=.-|...|..-.-....- ..++.+=|.|+..|--|.|......-.
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar 61 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEAR 61 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 45677777777777766664222111111 567777788888888887777655443
No 245
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=22.25 E-value=77 Score=37.01 Aligned_cols=71 Identities=18% Similarity=0.329 Sum_probs=44.1
Q ss_pred EEEEEEEeCC-eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEeCCCCCcEEEEEecChHHHHHH
Q 005588 38 KKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (689)
Q Consensus 38 kKRWFVL~~~-~L~YYKd~~~~~p~~~~e~~l~L~~I~L~~~~sv~~~~~kk~~FvI~~~~~~~rty~fqAdSeeE~~eW 116 (689)
++|.|+|+.+ .++|+. +.... .-+.|.+..+..+.. ...+.+|+.++ .++|+|.- -......|
T Consensus 466 rkr~lllTn~~rll~~~-~~~~~---------lk~eip~~~~~~~e~-~n~~~~~i~TP----~k~~~l~d-~~~~as~w 529 (604)
T KOG0592|consen 466 RKRMLLLTNGPRLLYVD-PQNLV---------LKGEIPWSPDLRVEL-KNSSTFFIHTP----NKVYYLED-PEQRASVW 529 (604)
T ss_pred ceeEEEecCCCeEEEEe-cccce---------eccccccCcccceee-ccCcceEEECC----ccceeccC-cccchhHH
Confidence 6799999864 666665 22221 122355555333322 34446677776 68888865 45677889
Q ss_pred HHHHHHHH
Q 005588 117 KTALELAL 124 (689)
Q Consensus 117 i~AL~~ai 124 (689)
..+|..+-
T Consensus 530 ~~ai~~~~ 537 (604)
T KOG0592|consen 530 CKAIETVR 537 (604)
T ss_pred HHhhhhhh
Confidence 99999883
No 246
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.13 E-value=8.7e+02 Score=24.96 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=16.3
Q ss_pred hHHHHHhHhhhhhHHHHHHHH
Q 005588 579 EEELAIQRLEITKNDLRHRIA 599 (689)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~ 599 (689)
....+|.+|+..-..|+.||.
T Consensus 15 t~~d~~~~l~~r~~~l~kKi~ 35 (211)
T PTZ00464 15 TLEDASKRIGGRSEVVDARIN 35 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 356677889888888888884
No 247
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.86 E-value=1.4e+02 Score=27.47 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 610 ASLERRKQALHERRLALEQDVSRLQEQLQA 639 (689)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (689)
.-|++|+..|.+....|+++++.+++|+..
T Consensus 89 ~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 89 EFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888888887754
No 248
>PRK11239 hypothetical protein; Provisional
Probab=21.83 E-value=1.1e+02 Score=31.55 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 616 KQALHERRLALEQDVSRLQEQLQA 639 (689)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~ 639 (689)
..+|.+|=-+||++|+.|+.||+.
T Consensus 185 ~~~Le~rv~~Le~eva~L~~~l~~ 208 (215)
T PRK11239 185 DGDLQARVEALEIEVAELKQRLDS 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788888899999999988875
No 249
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=21.80 E-value=4.1e+02 Score=28.88 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=37.5
Q ss_pred hHhhhhhHHHHHHHH-----------HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 585 QRLEITKNDLRHRIA-----------KEARGNAILQASLERRKQALHERRLALEQDVSRLQE 635 (689)
Q Consensus 585 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (689)
.+||..+..|++||. .-||||..|++-++= -+.||.-=..|.+.++.+-+
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L-~~~L~~eI~~f~~~l~~~~~ 105 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPL-TKDLRREIDSFDERLEEAAE 105 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 899999999999992 568999999998864 34555555556666655555
No 250
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.63 E-value=3.5e+02 Score=33.24 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHhHhhhhhHHHHHHH---HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 581 ELAIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (689)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (689)
|..|++||..+.+++.+. .++.+....++..||++.+.|.++|..+.++..+=.+++-++-.-.+
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~ 581 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEV 581 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 251
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=21.59 E-value=5.6e+02 Score=26.31 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 611 SLERRKQALHERRLALEQDVSRLQEQLQAER 641 (689)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (689)
.||++=+.+..+-+.+|..+.+|+.|+..-|
T Consensus 179 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777766554443
No 252
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=21.52 E-value=2e+02 Score=35.93 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=11.9
Q ss_pred CCCCCCCCCCcccccccCc
Q 005588 546 KGTSSNFSAKRSAFWGRSN 564 (689)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~ 564 (689)
.+....-|+-| -+||-++
T Consensus 519 ~~~t~L~~GdR-iLwGnnH 536 (1714)
T KOG0241|consen 519 CSTTQLWHGDR-ILWGNNH 536 (1714)
T ss_pred ccccccccCce-EEecccc
Confidence 33344567777 8999765
No 253
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=21.43 E-value=3.1e+02 Score=29.43 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 608 LQASLERRKQALHERRLALEQDVSRLQ 634 (689)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (689)
+++.++.+++.+++++.-|.+-+..-+
T Consensus 230 ~~~~le~~~~~~ee~~~~L~ekme~e~ 256 (297)
T PF02841_consen 230 QEQMLEQQERSYEEHIKQLKEKMEEER 256 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444444444333333
No 254
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=20.89 E-value=2.7e+02 Score=31.89 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=9.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHH
Q 005588 623 RLALEQDVS-RLQEQLQAERDLR 644 (689)
Q Consensus 623 ~~~~~~~~~-~~~~~~~~~~~~~ 644 (689)
-||.|++.- .+|.+|.|||..|
T Consensus 550 ql~~ErklR~~~qkr~kkEkk~k 572 (641)
T KOG3915|consen 550 QLAMERKLRAIVQKRLKKEKKAK 572 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 3455555554433
No 255
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=20.76 E-value=94 Score=26.42 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=33.1
Q ss_pred cCCeeecCCCHHHHHHHHHHhhcCCccCCCCCCcccchhhHHHHhhhCCC
Q 005588 198 VEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPS 247 (689)
Q Consensus 198 ~EGIFR~sG~~~~v~~L~~~ld~g~~~~~~~~Dvh~VAslLK~fLReLPe 247 (689)
.+|-|+++|+.. +..+.+.+.- .++. .+.++||+++-..|..+|.
T Consensus 4 ~~~~~~v~G~~~-l~~l~~~~~~---~l~~-~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 4 DDGTYIVSGSTP-LDDLNELLGL---DLPE-EDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TTSEEEEETTSB-HHHHHHHHTS----TTT-TTTSBHHHHHHHHHTSS--
T ss_pred cCCEEEEEecCC-HHHHHHHHCc---CCCc-cchhhHHHHHHHHcCCCCC
Confidence 468899999875 6677777763 3433 5888999999999999986
No 256
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.74 E-value=3.3e+02 Score=33.56 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=30.3
Q ss_pred HHHHHhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAE 640 (689)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (689)
++..+++|=..-.+.+..+.++...=+.+.+.+++.++.|.+.+..|++...++.+++++|
T Consensus 514 ~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 574 (782)
T PRK00409 514 DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444333333334444444444445555556666666666666666555555544433
No 257
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=20.70 E-value=2.2e+02 Score=27.49 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=18.2
Q ss_pred HHhHhhhhhHHHHHHHHHHhhhhhhhh
Q 005588 583 AIQRLEITKNDLRHRIAKEARGNAILQ 609 (689)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (689)
+|++||..|..++.||.+ -++.||
T Consensus 2 ~~~~Le~ek~~~~~rI~~---K~~~Lq 25 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKK---KKEQLQ 25 (142)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 589999999999999873 344444
No 258
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.56 E-value=1.5e+02 Score=27.88 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 611 SLERRKQALHERRLALEQDVSRLQEQLQA 639 (689)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (689)
-|++|++.|.+....|+++.+.+++|+++
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQ 126 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666665543
No 259
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.53 E-value=4.3e+02 Score=24.32 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005588 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (689)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (689)
.+.++.+.+.|.+++..|++..++||+.++.=.++.+..+.
T Consensus 75 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~ 115 (118)
T cd04776 75 RKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRE 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788889999999999999998888765555444443
No 260
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=20.34 E-value=6.4e+02 Score=23.64 Aligned_cols=66 Identities=18% Similarity=0.338 Sum_probs=45.2
Q ss_pred ChhHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 577 SGEEELAIQRLEITKNDLRHRIAKEARGNAILQA------SLERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (689)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (689)
..+.+...+++-.....++..|. |...++++ +.+.-++.+...-.+..++++.|+.+|...|..|.
T Consensus 41 ~e~~~~~~e~~l~~l~~~e~~~~---k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~ 112 (139)
T PF05615_consen 41 SEESQFLYERLLKELAQFEFSIL---KSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQ 112 (139)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888877777777775 33344443 33333444555555777889999999999998887
No 261
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=20.15 E-value=2.5e+02 Score=28.19 Aligned_cols=52 Identities=29% Similarity=0.309 Sum_probs=36.6
Q ss_pred HhHhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005588 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (689)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (689)
|.++|+..++|+.++.+-.+.=.-||-..|.+++-+.+ -.++.+|.|+|-.+
T Consensus 138 ~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~--------~ne~~~~v~~e~sk 189 (192)
T COG5374 138 IDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDK--------YNELREQVQKESSK 189 (192)
T ss_pred hhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHhh
Confidence 45678888888888887777777777777777765543 35677777777543
No 262
>PRK09039 hypothetical protein; Validated
Probab=20.04 E-value=4.8e+02 Score=28.76 Aligned_cols=18 Identities=6% Similarity=0.147 Sum_probs=9.1
Q ss_pred ccCCccccchhHHHHHHH
Q 005588 662 RGMDSKVCTDHKRFVSFL 679 (689)
Q Consensus 662 ~~~d~~~~~~lee~~~~~ 679 (689)
..+....++.|.+||..|
T Consensus 233 a~L~~~~~~~L~~ia~~l 250 (343)
T PRK09039 233 AELNPEGQAEIAKLAAAL 250 (343)
T ss_pred cccCHHHHHHHHHHHHHH
Confidence 344445555555555544
Done!