Query 005588
Match_columns 689
No_of_seqs 309 out of 2374
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 18:49:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005588.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2093-2097//hhsearch_pdb/005588hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 1.0 1 1 315.1 14.8 204 153-375 7-214 (214)
2 3msx_B RHO GTPase-activating p 1.0 1 1 314.9 14.6 196 159-372 6-201 (201)
3 3fk2_A Glucocorticoid receptor 1.0 1 1 314.0 14.8 196 160-374 48-245 (246)
4 2ee4_A RHO GTPase activating p 1.0 1 1 313.2 14.7 199 160-377 7-207 (209)
5 3iug_A RHO/CDC42/RAC GTPase-ac 1.0 1 1 313.1 15.2 210 154-377 10-224 (229)
6 1f7c_A Rhogap protein; GTPase 1.0 1 1 311.3 14.2 211 109-377 1-221 (231)
7 1ow3_A RHO-GTPase-activating p 1.0 1 1 307.2 14.2 198 158-376 37-238 (242)
8 1tx4_A P50-rhogap; complex (GT 1.0 1 1 305.2 14.1 193 159-372 2-198 (198)
9 3cxl_A N-chimerin; SH2, RHO-GA 1.0 1 1 302.2 14.3 192 163-372 267-463 (463)
10 2osa_A N-chimaerin; RHO-GAP, G 1.0 1 1 301.7 16.7 192 163-372 6-202 (202)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=1.00 E-value=1 Score=315.09 Aligned_cols=204 Identities=25% Similarity=0.380 Sum_probs=178.1
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCC---C
Q ss_conf 556678988885025565777420-799858999999999950997579142499999999999996308766799---8
Q 005588 153 HQWRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSA---D 228 (689)
Q Consensus 153 ~~~k~~~~~~~~vFGvpL~~ll~~-~~~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~~~~---~ 228 (689)
..++.++..+..+||+||..++++ ...||.+|.+|+.+|+++|+.+|||||++|+...++++++.+|+|...... .
T Consensus 7 ~~l~~~~~~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~ 86 (214)
T 3byi_A 7 KTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQW 86 (214)
T ss_dssp HHHHHHTSCCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGG
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 46876388768823886799997769998969999999999828987882323787999999999982579978884555
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88012045688876209999999565999999981199999999999988536995679999999999999632657788
Q 005588 229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENR 308 (689)
Q Consensus 229 ~Dvh~vA~lLK~fLReLPePLlp~~ly~~ll~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~Nk 308 (689)
.|+|+||++||.|||+||+||+|.++|+.|+.+....+.++++..++.++ .+||++|+.+|+||+.||++|+.|++.||
T Consensus 87 ~dvh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~Nk 165 (214)
T 3byi_A 87 EDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLV-QKLPPPNRDTMKVLFGHLTKIVAKASKNL 165 (214)
T ss_dssp CSHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 53489989999999858988899999999999986699999999999999-96899999999999999999997356779
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9922113330233257897898765443377899669999999997899999999997343237888
Q 005588 309 MTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (689)
Q Consensus 309 Mt~~NLAivfaP~Llrp~~~~~~~led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF~~~ 375 (689)
|++.|||+||||+|+|++.... + .+.....++.+|++||+||+.||+++
T Consensus 166 M~~~NLa~vf~P~Ll~~~~~~~-----------~-------~~~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 166 MSTQSLGIVFGPTLLRAENETG-----------N-------MAIHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp CCHHHHHHHHHHHHHCCTTSSS-----------C-------HHHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred CCHHHHHHHHCCCCCCCCCCCH-----------H-------HHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9879869986450378887537-----------7-------99987999999999999799856999
No 2
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=1.00 E-value=1 Score=314.89 Aligned_cols=196 Identities=24% Similarity=0.394 Sum_probs=175.9
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 98888502556577742079985899999999995099757914249999999999999630876679988801204568
Q 005588 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (689)
Q Consensus 159 ~~~~~~vFGvpL~~ll~~~~~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~~~~~~Dvh~vA~lL 238 (689)
.+.++.+||+||..++++ ++||.+|.+|+.+|+++|+.+|||||++|+...++++++.+|.|....+..+|+|++|++|
T Consensus 6 ~~~~~~vFG~~L~~~~~~-~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~lL 84 (201)
T 3msx_B 6 SPMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVL 84 (201)
T ss_dssp ----CCCTTSCHHHHSGG-GCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHHHH
T ss_pred CCCCCCEECCCHHHHHCC-CCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 999988428769999608-9989799999999998499889806639789999999999616998888855377899999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
Q ss_conf 88762099999995659999999811999999999999885369956799999999999996326577889922113330
Q 005588 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (689)
Q Consensus 239 K~fLReLPePLlp~~ly~~ll~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivf 318 (689)
|.|||+||+||+|.++|+.|+.+....+.++++..++.++ .+||++|+.+|+||+.||++|+.|++.|||++.|||+||
T Consensus 85 K~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf 163 (201)
T 3msx_B 85 KDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLL-DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 163 (201)
T ss_dssp HHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 9999958987789999999999873356799999999999-989999999999999999999965364789803655553
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 233257897898765443377899669999999997899999999997343237
Q 005588 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (689)
Q Consensus 319 aP~Llrp~~~~~~~led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF 372 (689)
||+|+|++...... .......+++.+|++||+||+.||
T Consensus 164 ~P~ll~~~~~~~~~----------------~~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 164 APSILWPPASSSPE----------------LENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHCCCCTTSCHH----------------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCCCCCCCHH----------------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 16201789777767----------------899999999999999997458429
No 3
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=314.01 Aligned_cols=196 Identities=23% Similarity=0.431 Sum_probs=175.5
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCC--CCCCCCCCHHH
Q ss_conf 8888502556577742079985899999999995099757914249999999999999630876679--98880120456
Q 005588 160 PVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS--ADEDAHVIGDC 237 (689)
Q Consensus 160 ~~~~~vFGvpL~~ll~~~~~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~~~--~~~Dvh~vA~l 237 (689)
..+..+||+||..++...+.||.+|.+|+.+|+++|+.+|||||++|+...++.+++.||.|..... .++|||+||++
T Consensus 48 ~~~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~l 127 (246)
T 3fk2_A 48 TWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGA 127 (246)
T ss_dssp -CCCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHH
T ss_pred CCCCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 66788538778999628999892999999999982998788367478477999999999659997855466769999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 88876209999999565999999981199999999999988536995679999999999999632657788992211333
Q 005588 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (689)
Q Consensus 238 LK~fLReLPePLlp~~ly~~ll~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAiv 317 (689)
||.|||+||+||+|.++|+.|+.+....+.++++..++.++ .+||++|+.+|+||+.||++|+.+++.|+|++.|||+|
T Consensus 128 LK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAiv 206 (246)
T 3fk2_A 128 MKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVL-KKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSIC 206 (246)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999858986688999999998852487799999999999-97899999999999999999986357668965775787
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 023325789789876544337789966999999999789999999999734323788
Q 005588 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (689)
Q Consensus 318 faP~Llrp~~~~~~~led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF~~ 374 (689)
|||+|+||.... + .+......++.+|++||+||+.||.+
T Consensus 207 f~P~Llrp~~~~---~---------------~~~~~~~~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 207 FWPTLMRPDFST---M---------------DALTATRTYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHCCCSSS---S---------------CHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred HCCCCCCCCCCC---H---------------HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 406203889754---7---------------79998899999999999967986389
No 4
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=1.00 E-value=1 Score=313.20 Aligned_cols=199 Identities=22% Similarity=0.376 Sum_probs=175.6
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCC--CCCCCCCCHHH
Q ss_conf 8888502556577742079985899999999995099757914249999999999999630876679--98880120456
Q 005588 160 PVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS--ADEDAHVIGDC 237 (689)
Q Consensus 160 ~~~~~vFGvpL~~ll~~~~~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~~~--~~~Dvh~vA~l 237 (689)
..+..+||+||..++.+...||.+|.+|+.+|+++|+.+|||||++|+...++++++.|++|..... .++|+|+||++
T Consensus 7 ~~~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~l 86 (209)
T 2ee4_A 7 GWESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGA 86 (209)
T ss_dssp SSCCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHH
T ss_pred CCCCCEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999608868999736999892999999999981998787310689899999999998558998855678889999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 88876209999999565999999981199999999999988536995679999999999999632657788992211333
Q 005588 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (689)
Q Consensus 238 LK~fLReLPePLlp~~ly~~ll~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAiv 317 (689)
||.|||+||+||+|.++|+.|+.+.+..+..+++..++.++ .+||++|+.+|+||+.||++|+.+++.|||++.|||+|
T Consensus 87 LK~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaiv 165 (209)
T 2ee4_A 87 LKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIV-KKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSIC 165 (209)
T ss_dssp HHHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHT-TTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999849986679999999999982899899999999999-97899999999999999999985644427987887887
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 023325789789876544337789966999999999789999999999734323788876
Q 005588 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (689)
Q Consensus 318 faP~Llrp~~~~~~~led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (689)
|||+|+|++..+...+.+ +...+.+|++||+||+.||++++.
T Consensus 166 f~P~L~~~~~~~~~~l~~------------------~~~~~~vve~LI~~~~~iF~~~~~ 207 (209)
T 2ee4_A 166 FWPTLMRPDFENREFLST------------------TKIHQSVVETFIQQCQFFFYNGEI 207 (209)
T ss_dssp HHHHHSCCCCCSSCCSCC------------------CTTHHHHHHHHHHTHHHHTTCCCC
T ss_pred HCCCCCCCCCCCHHHHHH------------------HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 336111889866889997------------------699999999999856987199987
No 5
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=1.00 E-value=1 Score=313.14 Aligned_cols=210 Identities=20% Similarity=0.272 Sum_probs=179.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCC----C
Q ss_conf 56678988885025565777420-799858999999999950997579142499999999999996308766799----8
Q 005588 154 QWRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSA----D 228 (689)
Q Consensus 154 ~~k~~~~~~~~vFGvpL~~ll~~-~~~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~~~~----~ 228 (689)
.|++++..+.++||+||..++.+ ...||.+|.+|+.+|+++|+ +|||||++|+...++++++.|+.|...... .
T Consensus 10 ~~~~~~~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~ 88 (229)
T 3iug_A 10 GRENLYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYV 88 (229)
T ss_dssp --------CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTT
T ss_pred CCCCCCCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 66788889989689665999976699889799999999998099-88874368869999999999855898886501033
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88012045688876209999999565999999981199999999999988536995679999999999999632657788
Q 005588 229 EDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENR 308 (689)
Q Consensus 229 ~Dvh~vA~lLK~fLReLPePLlp~~ly~~ll~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~Nk 308 (689)
+|+|+||++||.|||+||+||+|.++|+.|+.+....+.++++..++.++ .+||++|+.+|+||+.||++|+.+++.||
T Consensus 89 ~dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~Nk 167 (229)
T 3iug_A 89 QDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVI-QQLPPPHYRTLEFLMRHLSLLADYCSITN 167 (229)
T ss_dssp TCHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 42288999999999978997759899999999997488899999999999-97999999999999999999996647357
Q ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 992211333023325789789876544337789966999999999789999999999734323788876
Q 005588 309 MTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (689)
Q Consensus 309 Mt~~NLAivfaP~Llrp~~~~~~~led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (689)
|++.|||+||||+|+|++...... . ...++......++.+|++||+||+.||+++..
T Consensus 168 M~~~NLAivf~P~Ll~~~~~~~~~------~------~~~~~~~~~~~~~~vve~LI~~~~~iF~~~~~ 224 (229)
T 3iug_A 168 MHAKNLAIVWAPNLLRSKQIESAC------F------SGTAAFMEVRIQSVVVEFILNHVDVLFSGRIS 224 (229)
T ss_dssp CCHHHHHHHHHHHHCCC-------------------------------CHHHHHHHHHTHHHHTC----
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCC------C------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 982787998713402778633122------3------21788887899999999999867880798377
No 6
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=1.00 E-value=1 Score=311.30 Aligned_cols=211 Identities=23% Similarity=0.330 Sum_probs=180.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC----CCCHHH
Q ss_conf 8578999999999998407750000276665447888644575455667898888502556577742079----985899
Q 005588 109 TSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILLALEDID----GGPSFL 184 (689)
Q Consensus 109 seeEl~eWI~aIr~al~~sp~~a~~~g~~~~f~~~~~~~~e~~~~~~k~~~~~~~~vFGvpL~~ll~~~~----~VP~iI 184 (689)
+++|+..|+.++... .++||+||...+++.. .+|.+|
T Consensus 1 ~e~~~~~W~~~m~~~---------------------------------------~pvfgvpl~~~~~~~~~l~~~~p~iv 41 (231)
T 1f7c_A 1 SEEDRRLWMEAMDGR---------------------------------------EPVYNSNKDNQSEGTAQLDSIGFSII 41 (231)
T ss_dssp ---------------------------------------------------------------------CCSSHHHHHHH
T ss_pred CHHHHHHHHHHCCCC---------------------------------------CCCCCCCCHHCCCCCCCCCCCCCCHH
T ss_conf 967899999970899---------------------------------------98437860002444321577676099
Q ss_pred HHHHHHHHHCCCCCCCEEECCCCHHHHHHHHH-HHHCCC---CCCC--CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99999999509975791424999999999999-963087---6679--98880120456888762099999995659999
Q 005588 185 EKALRFLEKFGTKVEGILRQAADVEEVDRRVQ-EYEQGK---TEFS--ADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (689)
Q Consensus 185 ~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~-~ld~g~---~~~~--~~~Dvh~vA~lLK~fLReLPePLlp~~ly~~l 258 (689)
.+|+.+|+++|+.+|||||++|+..+|+++++ .+|.|. .++. ..+|+|+||++||.|||+||+||+|.++|+.|
T Consensus 42 ~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~ 121 (231)
T 1f7c_A 42 KKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSF 121 (231)
T ss_dssp HHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 99999999848997871553784999999999986747776668422333669999999999998789877899999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99981199999999999988536995679999999999999632657788992211333023325789789876544337
Q 005588 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFD 338 (689)
Q Consensus 259 l~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAivfaP~Llrp~~~~~~~led~~~ 338 (689)
+.+.+..+.++++..++.++ .+||++|+.+|+||+.||++|+.|++.|||++.|||+||||+|+|++..+...+
T Consensus 122 ~~~~~~~~~~~r~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~----- 195 (231)
T 1f7c_A 122 IKAAKLENQESRVSEIHSLV-HRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVANLGVVFGPTLLRPQEETVAAI----- 195 (231)
T ss_dssp HHHHTCSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCC---CCSGG-----
T ss_pred HHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHH-----
T ss_conf 99985289999999999999-979999999999999999999963777789889999996242078886668899-----
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 789966999999999789999999999734323788876
Q 005588 339 MNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (689)
Q Consensus 339 ~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (689)
.....++.+|++||+||+.||++...
T Consensus 196 -------------~~~~~~~~vve~LI~~~~~iF~~~~~ 221 (231)
T 1f7c_A 196 -------------MDIKFQNIVIEILIENHEKIFNTVPE 221 (231)
T ss_dssp -------------GGHHHHHHHHHHHHHTHHHHHHSCCC
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf -------------87799999999999979986799999
No 7
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=1.00 E-value=1 Score=307.16 Aligned_cols=198 Identities=23% Similarity=0.337 Sum_probs=173.1
Q ss_pred CCCCCCCCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCC-CCCCCCC
Q ss_conf 898888502556577742079---985899999999995099757914249999999999999630876679-9888012
Q 005588 158 KRPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS-ADEDAHV 233 (689)
Q Consensus 158 ~~~~~~~vFGvpL~~ll~~~~---~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~~~-~~~Dvh~ 233 (689)
+++.+..+||++|+.++++.+ .||.+|.+|+.+|+++|+.+|||||++|+...++++++.||+|....+ ...|+|+
T Consensus 37 ~~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~ 116 (242)
T 1ow3_A 37 RPPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHL 116 (242)
T ss_dssp --CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHH
T ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 89998882597599997605998888999999999999819997862564786999999999984689877221566279
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 04568887620999999956599999998119999999999998853699567999999999999963265778899221
Q 005588 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSA 313 (689)
Q Consensus 234 vA~lLK~fLReLPePLlp~~ly~~ll~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~N 313 (689)
+|++||.|||+||+||+|.++|+.|+.+... +.++++..++.++ .+||++|+.+|+||+.||++|+.|++.|||++.|
T Consensus 117 va~lLK~flReLPePLl~~~ly~~~~~~~~~-~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 194 (242)
T 1ow3_A 117 PAVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTN 194 (242)
T ss_dssp HHHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 9999999998579877789999999999868-9899999999999-9789999999999999999999612767899888
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 133302332578978987654433778996699999999978999999999973432378887
Q 005588 314 VAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (689)
Q Consensus 314 LAivfaP~Llrp~~~~~~~led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (689)
||+||||+|+|++.. . ..+.....++.+|++||+||+.||++..
T Consensus 195 LAivf~P~Ll~~~~~---------------~----~~~~~~~~~~~~v~~LI~~~~~iF~~~~ 238 (242)
T 1ow3_A 195 LAVVFGPNLLWAKDA---------------A----ITLKAINPINTFTKFLLDHQGELFPSPD 238 (242)
T ss_dssp HHHHHHHHHCCCSSH---------------H----HHHHTHHHHHHHHHHHHHTHHHHC----
T ss_pred HHHHHCCHHCCCCCC---------------C----CCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 598520200787985---------------3----1099999999999999997999859999
No 8
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=1.00 E-value=1 Score=305.20 Aligned_cols=193 Identities=24% Similarity=0.361 Sum_probs=170.1
Q ss_pred CCCCCCCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCC
Q ss_conf 98888502556577742079---9858999999999950997579142499999999999996308766-7998880120
Q 005588 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVI 234 (689)
Q Consensus 159 ~~~~~~vFGvpL~~ll~~~~---~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~~~-~~~~~Dvh~v 234 (689)
++.+..+||+||..++++.+ .||.+|.+|+.+|+++|+.+|||||++|+...++++++.||+|... +....|+|++
T Consensus 2 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~ 81 (198)
T 1tx4_A 2 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP 81 (198)
T ss_dssp -CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 99998813886899996489989889899999999998099878734217859999999999827999881104662289
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 45688876209999999565999999981199999999999988536995679999999999999632657788992211
Q 005588 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (689)
Q Consensus 235 A~lLK~fLReLPePLlp~~ly~~ll~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NL 314 (689)
|++||.|||+||+||+|.++|+.|+.+... +.++++..++.++ .+||++|+.+|+||+.||++|+.|++.|||++.||
T Consensus 82 a~lLK~flreLpePLi~~~l~~~~~~~~~~-~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL 159 (198)
T 1tx4_A 82 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159 (198)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 999999999789867799999999999868-9899999999999-97899999999999999999986268888988987
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3330233257897898765443377899669999999997899999999997343237
Q 005588 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (689)
Q Consensus 315 AivfaP~Llrp~~~~~~~led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF 372 (689)
|+||||+|+|++.. . ........++.+|++||+||+.||
T Consensus 160 a~vf~P~Ll~~~~~---------------~----~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 160 AVVFGPNLLWAKDA---------------A----ITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHHCCCSSH---------------H----HHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHCCCCCCCCCC---------------C----CCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 85641441578986---------------2----169999999999999998489749
No 9
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=1.00 E-value=1 Score=302.17 Aligned_cols=192 Identities=18% Similarity=0.321 Sum_probs=169.9
Q ss_pred CCCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCCC--CCCC--CCCCCCCCHHH
Q ss_conf 85025565777420-7998589999999999509975791424999999999999963087--6679--98880120456
Q 005588 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDC 237 (689)
Q Consensus 163 ~~vFGvpL~~ll~~-~~~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g~--~~~~--~~~Dvh~vA~l 237 (689)
..+||+||..++++ ...||.+|.+|+.+|+++|+.+|||||++|+...|++|++.||++. .++. ...|+|+||++
T Consensus 267 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~l 346 (463)
T 3cxl_A 267 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 346 (463)
T ss_dssp CCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred CCCCCCCCCHHHHCCCCCCCEEHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
T ss_conf 32234653100003699788628998999985078878625725989999999999983587677552347880011357
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 88876209999999565999999981199999999999988536995679999999999999632657788992211333
Q 005588 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (689)
Q Consensus 238 LK~fLReLPePLlp~~ly~~ll~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAiv 317 (689)
||.|||+||+||||.++|+.|+.+....+.++++..++.++ ..||++|+.+|.||+.||++|+.+++.|+|++.|||+|
T Consensus 347 LK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAiv 425 (463)
T 3cxl_A 347 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 425 (463)
T ss_dssp HHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999856787788899999999984599999999999999-85899999999999999999985356558998997998
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 0233257897898765443377899669999999997899999999997343237
Q 005588 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (689)
Q Consensus 318 faP~Llrp~~~~~~~led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF 372 (689)
|||+|+|++..+.. +++.....++.+|++||+||+.||
T Consensus 426 f~P~Ll~~~~~~~~-----------------~~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 426 FGPTLMRSPELDAM-----------------AALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHCCCCCSCTT-----------------GGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred HHCCCCCCCCCCHH-----------------HHHHHHHHHHHHHHHHHHCHHHCC
T ss_conf 60502688986678-----------------899878999999999985546219
No 10
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=301.74 Aligned_cols=192 Identities=18% Similarity=0.333 Sum_probs=171.0
Q ss_pred CCCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHCC-C-CCCC--CCCCCCCCHHH
Q ss_conf 85025565777420-799858999999999950997579142499999999999996308-7-6679--98880120456
Q 005588 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDC 237 (689)
Q Consensus 163 ~~vFGvpL~~ll~~-~~~VP~iI~~~l~~L~~~Gl~~eGIFR~sg~~~~i~~L~~~ld~g-~-~~~~--~~~Dvh~vA~l 237 (689)
.++||+||..++++ ...+|.+|.+|+.+|+++|+.+|||||++|+...++++++.||++ . .++. ...|+|++|++
T Consensus 6 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~l 85 (202)
T 2osa_A 6 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 85 (202)
T ss_dssp -CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 88667886999977599989499999999998488867823306849999999999983897567774444567899999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 88876209999999565999999981199999999999988536995679999999999999632657788992211333
Q 005588 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (689)
Q Consensus 238 LK~fLReLPePLlp~~ly~~ll~~~~~~~~~~ki~~i~~lil~~LP~~n~~lL~~Ll~~L~~Va~~s~~NkMt~~NLAiv 317 (689)
||.|||+||+||+|.++|+.|+.+.+..+.++++..++.++ .+||++|+.+|+||+.||++|+.|++.|||++.|||+|
T Consensus 86 LK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v 164 (202)
T 2osa_A 86 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 164 (202)
T ss_dssp HHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 99999968974479999999999983699999999999999-97899999999999999999864165778998999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 0233257897898765443377899669999999997899999999997343237
Q 005588 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (689)
Q Consensus 318 faP~Llrp~~~~~~~led~~~~~g~~~~ql~aa~~~~~~~~~iVe~LIen~~~IF 372 (689)
|||+|+|++... . ++.......++.+|++||+||+.||
T Consensus 165 f~P~Ll~~~~~~--------------~---~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 165 FGPTLMRSPELD--------------A---MAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HCCCCCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 713427999846--------------8---8999979999999999997151049
Done!