BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005589
         (689 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O94481|TFC5_SCHPO Transcription factor TFIIIB component B'' OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=bdp1 PE=3 SV=2
          Length = 520

 Score = 71.2 bits (173), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 43/55 (78%)

Query: 578 RWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEAL 632
           +W+  +TE FY+A+ Q+GTD ++I  +FP R R+Q+KLK+K+EER +P R+ +AL
Sbjct: 380 KWNAMDTEKFYKALSQWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQAL 434


>sp|P46678|TFC5_YEAST Transcription factor TFIIIB component B'' OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=BDP1 PE=1
           SV=1
          Length = 594

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 69/124 (55%), Gaps = 4/124 (3%)

Query: 536 NEDETFASEQDNGSFGDPATDRV--QPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQ 593
           +E+        N S  +   ++V   P  + +NY S+ + + T  W+ +E   FY+A+  
Sbjct: 375 DEETMVVDRHKNASIENEYKEKVDENPFANLYNYGSYGRGSYTDPWTVEEMIKFYKALSM 434

Query: 594 FGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRAKDHSHFEQVIEQLQQFA 653
           +GTD ++I QL+P R+R+QVK K+  EE++ P+ +  AL  R+K   +F++   ++++  
Sbjct: 435 WGTDFNLISQLYPYRSRKQVKAKFVNEEKKRPILIELAL--RSKLPPNFDEYCCEIKKNI 492

Query: 654 AQAA 657
              A
Sbjct: 493 GTVA 496


>sp|Q571C7|BDP1_MOUSE Transcription factor TFIIIB component B'' homolog OS=Mus musculus
           GN=Bdp1 PE=2 SV=2
          Length = 2467

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 567 YQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPL 626
           Y SF K   +  WS +ET++F+ AI   GTD SMI QLFP R R ++K K+K+EE+ +  
Sbjct: 293 YSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGW 352

Query: 627 RLTEALT-NRAKDHSHFEQVIEQL 649
           R+ +A    R  D   F  +++++
Sbjct: 353 RIDKAFQEKRPFDFDFFAHLLQKV 376


>sp|A6H8Y1|BDP1_HUMAN Transcription factor TFIIIB component B'' homolog OS=Homo sapiens
           GN=BDP1 PE=1 SV=3
          Length = 2624

 Score = 66.6 bits (161), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 567 YQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPL 626
           Y SF K   +  WS +ET++F+ AI   GTD SMI QLFP R R ++K K+K+EE+ +  
Sbjct: 291 YSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGW 350

Query: 627 RLTEALT-NRAKDHSHFEQVIEQL 649
           R+ +A    R  D   F  +++++
Sbjct: 351 RIDKAFQEKRPFDFDFFAHLLQKV 374


>sp|Q59E36|RCOR_DROME REST corepressor OS=Drosophila melanogaster GN=CoRest PE=1 SV=1
          Length = 657

 Score = 37.4 bits (85), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 78/201 (38%), Gaps = 39/201 (19%)

Query: 439 SENGKTVRKRKKANEASDTD--KNPPKKFSHSTRRKRRIVNKELLQTPEDEIDPQK---V 493
           SENG  V     +NE SD D    P +    +T   RR  N+  +  PE    P K   +
Sbjct: 247 SENGSEV----GSNEESDNDDKSKPLQTADANTAIGRRTGNRRPISGPEGNRKPPKGMYI 302

Query: 494 PMKDLILLAEYKE---RLASKEAKATGTPL-KN-QSAEHSSREEDYHNEDETFASEQDNG 548
              DL  LA        LA +E K T     KN Q  E   +E +  N D+  +      
Sbjct: 303 NHDDLTALASCGNPSLYLAERERKLTALMAEKNRQVMEQLDKECETINVDDVLSK----- 357

Query: 549 SFGDPA---TDRVQPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLF 605
               PA   T+  QPR+             + RW   E ++   AIR++G +   I ++ 
Sbjct: 358 ----PAAANTESAQPRI-------------SARWLPDEIQVALLAIREYGKNFPTIAKVV 400

Query: 606 PGRTRQQVKLKYKKEEREHPL 626
             +T   V+  Y    R + L
Sbjct: 401 ATKTEAHVRTFYLNNRRRYNL 421


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.125    0.344 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 257,586,670
Number of Sequences: 539616
Number of extensions: 11133912
Number of successful extensions: 38526
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 713
Number of HSP's that attempted gapping in prelim test: 36852
Number of HSP's gapped (non-prelim): 1980
length of query: 689
length of database: 191,569,459
effective HSP length: 124
effective length of query: 565
effective length of database: 124,657,075
effective search space: 70431247375
effective search space used: 70431247375
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)