Query 005589
Match_columns 689
No_of_seqs 129 out of 211
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 01:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5118 BDP1 Transcription ini 99.9 6E-26 1.3E-30 237.0 10.3 97 550-646 339-436 (507)
2 KOG2009 Transcription initiati 99.9 5.5E-24 1.2E-28 231.2 14.8 238 407-658 244-497 (584)
3 PF00249 Myb_DNA-binding: Myb- 98.6 8.3E-08 1.8E-12 73.5 5.2 43 577-619 2-46 (48)
4 smart00717 SANT SANT SWI3, AD 98.3 1.4E-06 3.1E-11 62.9 6.1 44 577-620 2-46 (49)
5 cd00167 SANT 'SWI3, ADA2, N-Co 98.2 3.4E-06 7.3E-11 60.4 5.9 42 578-619 1-43 (45)
6 PF13921 Myb_DNA-bind_6: Myb-l 97.5 0.0002 4.3E-09 56.5 5.6 41 579-619 1-41 (60)
7 TIGR01557 myb_SHAQKYF myb-like 95.7 0.03 6.4E-07 46.1 6.0 44 575-618 2-51 (57)
8 PLN03212 Transcription repress 95.3 0.035 7.7E-07 57.4 6.1 49 574-622 76-124 (249)
9 PLN03091 hypothetical protein; 94.7 0.064 1.4E-06 59.4 6.5 48 575-622 66-113 (459)
10 KOG1194 Predicted DNA-binding 94.3 0.067 1.5E-06 59.5 5.6 44 575-618 186-229 (534)
11 KOG2009 Transcription initiati 93.6 0.34 7.4E-06 55.3 9.6 80 555-635 245-324 (584)
12 KOG0048 Transcription factor, 92.7 0.26 5.6E-06 49.5 6.3 50 574-623 60-109 (238)
13 PLN03212 Transcription repress 92.3 0.25 5.4E-06 51.4 5.7 45 574-618 23-69 (249)
14 KOG4329 DNA-binding protein [G 92.1 0.19 4.2E-06 55.0 4.7 44 575-618 276-320 (445)
15 PLN03091 hypothetical protein; 90.3 0.45 9.7E-06 53.0 5.6 79 570-648 8-114 (459)
16 KOG4167 Predicted DNA-binding 90.1 0.84 1.8E-05 53.7 7.6 46 573-618 616-661 (907)
17 KOG4468 Polycomb-group transcr 82.7 1.3 2.8E-05 51.2 4.0 47 576-622 88-138 (782)
18 KOG3554 Histone deacetylase co 80.1 1.7 3.8E-05 49.2 3.7 42 577-618 286-328 (693)
19 PF00191 Annexin: Annexin; In 73.3 3.2 6.9E-05 33.1 2.6 53 583-635 2-54 (66)
20 KOG0049 Transcription factor, 72.3 6.3 0.00014 46.5 5.6 47 574-620 358-405 (939)
21 COG5259 RSC8 RSC chromatin rem 71.7 5.5 0.00012 45.2 4.8 45 575-619 278-322 (531)
22 KOG1279 Chromatin remodeling f 67.4 10 0.00023 43.2 5.9 56 574-629 251-306 (506)
23 PF13837 Myb_DNA-bind_4: Myb/S 48.7 15 0.00032 30.6 2.4 48 577-624 2-67 (90)
24 KOG2656 DNA methyltransferase 46.8 8.9 0.00019 42.8 1.1 46 577-622 131-182 (445)
25 PLN03162 golden-2 like transcr 39.8 68 0.0015 36.2 6.3 45 569-615 230-281 (526)
26 KOG0048 Transcription factor, 35.9 41 0.00088 34.1 3.7 46 577-622 10-57 (238)
27 KOG0049 Transcription factor, 31.5 42 0.00091 40.1 3.3 43 573-615 409-452 (939)
28 KOG0051 RNA polymerase I termi 31.1 57 0.0012 38.3 4.2 56 564-619 424-505 (607)
29 KOG0819 Annexin [Intracellular 30.9 1.6E+02 0.0035 32.4 7.3 57 581-637 174-231 (321)
30 PLN03142 Probable chromatin-re 29.8 1.3E+02 0.0029 37.3 7.1 42 576-617 824-866 (1033)
No 1
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=99.93 E-value=6e-26 Score=237.04 Aligned_cols=97 Identities=36% Similarity=0.629 Sum_probs=89.2
Q ss_pred CCCCCcccccCCccccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHhhChHHHH
Q 005589 550 FGDPATDRVQPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLT 629 (689)
Q Consensus 550 ~dd~E~~~I~~~t~lvNs~Sy~Kr~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEERkNP~rV~ 629 (689)
.+.+|++...+..+++||+||+++.+..+|+.+|+++||+||+||||||+||++|||+|.|+|||.||++|||+||.||+
T Consensus 339 ~ee~E~veen~~ar~vts~t~g~~~~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn 418 (507)
T COG5118 339 VEEMEVVEENPFARIVTSSTFGKKKGALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERIN 418 (507)
T ss_pred HHHHHHhhccchhheeecccccCCCCCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHH
Confidence 45677888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC-CChhHHHHHH
Q 005589 630 EALTNRA-KDHSHFEQVI 646 (689)
Q Consensus 630 ~AL~~R~-~D~s~Fe~vI 646 (689)
.||+.+. +|+.+|..+.
T Consensus 419 ~aL~~kkp~d~~eY~k~~ 436 (507)
T COG5118 419 EALNEKKPFDQVEYNKLR 436 (507)
T ss_pred HHHhccCCCCHHHHhhHH
Confidence 9999775 5877766543
No 2
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=99.91 E-value=5.5e-24 Score=231.24 Aligned_cols=238 Identities=26% Similarity=0.382 Sum_probs=182.7
Q ss_pred CCCCCcCCCCCCCccccccccccCCCCccchhcccCcchhhhhhcccCccCCCCCCCCCChhhHhhhhhhhhhhhcCCCC
Q 005589 407 NAVDEDEGDVGGNSAEKTSEKKRAPRKSKETVSENGKTVRKRKKANEASDTDKNPPKKFSHSTRRKRRIVNKELLQTPED 486 (689)
Q Consensus 407 n~vd~ee~n~d~~~Ve~~s~k~r~~~~SKk~~~k~~ktsRkRK~a~~d~ekte~PpKKFsh~sRrkrr~~dK~LLE~Pdd 486 (689)
+.+..+...|+++.+.+..+++-...+|++ .++++|+..+.-.+.+.--.+.+.|+.|+.+ .+.+..+..++.
T Consensus 244 ~~~~iek~~~~g~~~~~~~~~~~~t~ss~~------~~~~~r~~~~~n~~~sk~~k~~p~~~rr~~k-~lEke~~~~~~~ 316 (584)
T KOG2009|consen 244 AVVLIEKDEREGNNAKYKRERETPTWSSKQ------ATRFKRSLIKPNKSFSKMEKEAPKESRRHTK-SLEKEARDEGDL 316 (584)
T ss_pred hHHHHHHhhhccchhhHhhhccCCcchhhh------hcccchhhcccchhhhhhhhhhhhhhhHHHH-Hhhccchhhhhh
Confidence 347788888999999999999999999988 8888887655555544444555677778777 788888888887
Q ss_pred CCCCCCCChHHHhhhhHHHHHhhhhhhccCCCCCCCCc-------cccccccccccccccccccccCC-CCCCCCCcccc
Q 005589 487 EIDPQKVPMKDLILLAEYKERLASKEAKATGTPLKNQS-------AEHSSREEDYHNEDETFASEQDN-GSFGDPATDRV 558 (689)
Q Consensus 487 EID~~~LpirDLilLae~rEr~a~Keak~Sgtss~NQs-------~~d~~~~~g~~~e~e~~~~Eq~~-~~~dd~E~~~I 558 (689)
.+. .|+-..+-.+++++++++....+.++ ++|+ ....+|.-.+..+.-.. .... ..+...++..+
T Consensus 317 ~~~--s~~~~~~~~~~elke~~e~~~~k~~~---sd~s~~~~~~~~~~~~g~~~~~ee~~~~--Dr~~~~s~~veE~e~v 389 (584)
T KOG2009|consen 317 KNK--SLLYPKMFELAELKESLEVEARKDAE---SDRSASEILRAELENPGKRRRDEESMVV--DRHKNDSSVVEENEVV 389 (584)
T ss_pred hhh--hccchhHHHHHHHHHHHHHHHhccCC---cchhhHHHHhhcccCCcceeeccchhhc--cccccccchhhhhhcc
Confidence 777 77788899999999999988877764 3332 22223333333332111 1122 23445666666
Q ss_pred cCCc--cccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHhhChHHHHHHHhcCC
Q 005589 559 QPRV--HFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRA 636 (689)
Q Consensus 559 ~~~t--~lvNs~Sy~Kr~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEERkNP~rV~~AL~~R~ 636 (689)
+++. +.+||+||+|+....+|+..||++||++|++||++|+||++|||+|+|+|||.||++||++||.+|..||+.+.
T Consensus 390 k~ts~~~~vn~~t~sk~~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r~p~~l~~al~~kk 469 (584)
T KOG2009|consen 390 KSTSLARPVNYATYSKKLETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKRNPLKLNTALRSKK 469 (584)
T ss_pred cccccccccchhhccCccccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhccchhhhhHHhhcC
Confidence 6654 78999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C-ChhHHH-----HHHHHHHHHHHHHHh
Q 005589 637 K-DHSHFE-----QVIEQLQQFAAQAAQ 658 (689)
Q Consensus 637 ~-D~s~Fe-----~vIEkLq~~aaqAee 658 (689)
+ |...+. .++..+.+...+|..
T Consensus 470 ~~~~d~~d~~y~~~v~~~~~e~v~~a~~ 497 (584)
T KOG2009|consen 470 PLDGDAYDDKYDVKVVKKADEEVIKADD 497 (584)
T ss_pred ccccccccchhhhhhhhhhHHHHHhccc
Confidence 5 655555 566677766666543
No 3
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.58 E-value=8.3e-08 Score=73.47 Aligned_cols=43 Identities=33% Similarity=0.716 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCC-HHHHHhhCC-CCCHHHHHHHhHH
Q 005589 577 VRWSKQETELFYEAIRQFGTD-LSMIQQLFP-GRTRQQVKLKYKK 619 (689)
Q Consensus 577 ~RWSkEETekFYeALs~fGTD-FsLIs~LFP-gRTRrQIK~KFkr 619 (689)
.+||.+|.++|.+++.+||++ |..|+..|| +||..||+.+|.+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 589999999999999999999 999999999 9999999999975
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.34 E-value=1.4e-06 Score=62.93 Aligned_cols=44 Identities=27% Similarity=0.649 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHhc-CCHHHHHhhCCCCCHHHHHHHhHHH
Q 005589 577 VRWSKQETELFYEAIRQFG-TDLSMIQQLFPGRTRQQVKLKYKKE 620 (689)
Q Consensus 577 ~RWSkEETekFYeALs~fG-TDFsLIs~LFPgRTRrQIK~KFkrE 620 (689)
..||.+|..+|..++.++| .+|..|+..||+||..+|+.+|..-
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~ 46 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNL 46 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5799999999999999999 9999999999999999999999864
No 5
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.22 E-value=3.4e-06 Score=60.37 Aligned_cols=42 Identities=31% Similarity=0.763 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHhc-CCHHHHHhhCCCCCHHHHHHHhHH
Q 005589 578 RWSKQETELFYEAIRQFG-TDLSMIQQLFPGRTRQQVKLKYKK 619 (689)
Q Consensus 578 RWSkEETekFYeALs~fG-TDFsLIs~LFPgRTRrQIK~KFkr 619 (689)
.||.+|..+|++++.++| .+|..|+..||+||..||+++|..
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHH
Confidence 599999999999999999 999999999999999999999975
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.52 E-value=0.0002 Score=56.45 Aligned_cols=41 Identities=29% Similarity=0.677 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHH
Q 005589 579 WSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKK 619 (689)
Q Consensus 579 WSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkr 619 (689)
||++|.++.-++...+|.++..|+.+||+||..||+.+|..
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999988999999999998
No 7
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=95.72 E-value=0.03 Score=46.11 Aligned_cols=44 Identities=30% Similarity=0.545 Sum_probs=37.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC-CH---HHHHhhC-CCC-CHHHHHHHhH
Q 005589 575 PTVRWSKQETELFYEAIRQFGT-DL---SMIQQLF-PGR-TRQQVKLKYK 618 (689)
Q Consensus 575 k~~RWSkEETekFYeALs~fGT-DF---sLIs~LF-PgR-TRrQIK~KFk 618 (689)
++.+||.+|-.+|-+||..+|- |. .-|..++ ..+ |+.||+.-+.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~Q 51 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQ 51 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHH
Confidence 4678999999999999999998 88 8887754 456 9999997654
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.27 E-value=0.035 Score=57.44 Aligned_cols=49 Identities=24% Similarity=0.366 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHh
Q 005589 574 TPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEER 622 (689)
Q Consensus 574 ~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEER 622 (689)
.....||.+|-++-.+....||.-...|+++||+||-.|||+.|+.=.|
T Consensus 76 I~kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~Lr 124 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLR 124 (249)
T ss_pred cccCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999999999999999999999999975433
No 9
>PLN03091 hypothetical protein; Provisional
Probab=94.70 E-value=0.064 Score=59.43 Aligned_cols=48 Identities=27% Similarity=0.365 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHh
Q 005589 575 PTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEER 622 (689)
Q Consensus 575 k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEER 622 (689)
+...||++|-++..+....||.-+..|+.+|||||..|||+.|+.=-|
T Consensus 66 kKgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLK 113 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK 113 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999999999975433
No 10
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=94.29 E-value=0.067 Score=59.52 Aligned_cols=44 Identities=27% Similarity=0.481 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhH
Q 005589 575 PTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYK 618 (689)
Q Consensus 575 k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFk 618 (689)
....|+.+|..+|-+|.++||++|.-|.+++|+|+-..|..-|-
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy 229 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYY 229 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHH
Confidence 46799999999999999999999999999999999999986653
No 11
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=93.65 E-value=0.34 Score=55.33 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=70.3
Q ss_pred cccccCCccccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHhhChHHHHHHHhc
Q 005589 555 TDRVQPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTN 634 (689)
Q Consensus 555 ~~~I~~~t~lvNs~Sy~Kr~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEERkNP~rV~~AL~~ 634 (689)
.+.|....+--|...|.+...+..|+...+-.||..+..-+++|++|.+.+|-+.|+.+| +|.+|.+.++..+..+|..
T Consensus 245 ~~~iek~~~~g~~~~~~~~~~~~t~ss~~~~~~~r~~~~~n~~~sk~~k~~p~~~rr~~k-~lEke~~~~~~~~~~s~~~ 323 (584)
T KOG2009|consen 245 VVLIEKDEREGNNAKYKRERETPTWSSKQATRFKRSLIKPNKSFSKMEKEAPKESRRHTK-SLEKEARDEGDLKNKSLLY 323 (584)
T ss_pred HHHHHHhhhccchhhHhhhccCCcchhhhhcccchhhcccchhhhhhhhhhhhhhhHHHH-Hhhccchhhhhhhhhhccc
Confidence 444555555667788887788999999999999999999999999999999999999999 9999999999999988865
Q ss_pred C
Q 005589 635 R 635 (689)
Q Consensus 635 R 635 (689)
.
T Consensus 324 ~ 324 (584)
T KOG2009|consen 324 P 324 (584)
T ss_pred h
Confidence 3
No 12
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=92.71 E-value=0.26 Score=49.46 Aligned_cols=50 Identities=24% Similarity=0.394 Sum_probs=44.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHhh
Q 005589 574 TPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEERE 623 (689)
Q Consensus 574 ~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEERk 623 (689)
.+...||.+|...-+++=+.+|--.++|++++||||-..||+-++--.|+
T Consensus 60 ikrg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkk 109 (238)
T KOG0048|consen 60 LKRGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKK 109 (238)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999988655544
No 13
>PLN03212 Transcription repressor MYB5; Provisional
Probab=92.26 E-value=0.25 Score=51.40 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=40.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC-CHHHHHhhC-CCCCHHHHHHHhH
Q 005589 574 TPTVRWSKQETELFYEAIRQFGT-DLSMIQQLF-PGRTRQQVKLKYK 618 (689)
Q Consensus 574 ~k~~RWSkEETekFYeALs~fGT-DFsLIs~LF-PgRTRrQIK~KFk 618 (689)
.+..+|+++|-++..+++..+|+ +...|++.+ |+||.+|++..|.
T Consensus 23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~ 69 (249)
T PLN03212 23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWM 69 (249)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHH
Confidence 45678999999999999999996 799999987 6999999999887
No 14
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=92.06 E-value=0.19 Score=54.99 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCHHHHHhh-CCCCCHHHHHHHhH
Q 005589 575 PTVRWSKQETELFYEAIRQFGTDLSMIQQL-FPGRTRQQVKLKYK 618 (689)
Q Consensus 575 k~~RWSkEETekFYeALs~fGTDFsLIs~L-FPgRTRrQIK~KFk 618 (689)
.-.-|+.+|...|-++|+.||-||.||++. .+.|+-.++-.-|-
T Consensus 276 ~l~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYY 320 (445)
T KOG4329|consen 276 DLSGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYY 320 (445)
T ss_pred ccccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHH
Confidence 346899999999999999999999999997 88999998876653
No 15
>PLN03091 hypothetical protein; Provisional
Probab=90.33 E-value=0.45 Score=53.04 Aligned_cols=79 Identities=16% Similarity=0.339 Sum_probs=58.8
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcC-CHHHHHhhC-CCCCHHHHHHHhHH-------------HHh-----------h
Q 005589 570 FMKKTPTVRWSKQETELFYEAIRQFGT-DLSMIQQLF-PGRTRQQVKLKYKK-------------EER-----------E 623 (689)
Q Consensus 570 y~Kr~k~~RWSkEETekFYeALs~fGT-DFsLIs~LF-PgRTRrQIK~KFkr-------------EER-----------k 623 (689)
|..+.+..+|+.+|=++..+++..||+ +...|++++ |+||.+|++..|.+ ||- .
T Consensus 8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn 87 (459)
T PLN03091 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN 87 (459)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence 334556779999999999999999997 799999876 59999999998873 222 3
Q ss_pred ChHHHHHHHhcCCCC--hhHHHHHHHH
Q 005589 624 HPLRLTEALTNRAKD--HSHFEQVIEQ 648 (689)
Q Consensus 624 NP~rV~~AL~~R~~D--~s~Fe~vIEk 648 (689)
++..|-..|.+|... -..|..+|++
T Consensus 88 KWskIAk~LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 88 RWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred chHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 556677777777642 2246666655
No 16
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=90.11 E-value=0.84 Score=53.66 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=42.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhH
Q 005589 573 KTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYK 618 (689)
Q Consensus 573 r~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFk 618 (689)
-.....|+..|..+|-+||-++--||.+|++|++++|-+|+-.-|-
T Consensus 616 Y~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYY 661 (907)
T KOG4167|consen 616 YAGSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYY 661 (907)
T ss_pred ecCcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHH
Confidence 3567899999999999999999999999999999999999987664
No 17
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=82.68 E-value=1.3 Score=51.21 Aligned_cols=47 Identities=30% Similarity=0.513 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCHHHHHh-hCC---CCCHHHHHHHhHHHHh
Q 005589 576 TVRWSKQETELFYEAIRQFGTDLSMIQQ-LFP---GRTRQQVKLKYKKEER 622 (689)
Q Consensus 576 ~~RWSkEETekFYeALs~fGTDFsLIs~-LFP---gRTRrQIK~KFkrEER 622 (689)
...|+..|-+-||.||++||-||+-|-. +.. ..||-|.|.||..--+
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~ 138 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHY 138 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHH
Confidence 3589999999999999999999998722 232 3466677777655433
No 18
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=80.06 E-value=1.7 Score=49.17 Aligned_cols=42 Identities=31% Similarity=0.599 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHh-hCCCCCHHHHHHHhH
Q 005589 577 VRWSKQETELFYEAIRQFGTDLSMIQQ-LFPGRTRQQVKLKYK 618 (689)
Q Consensus 577 ~RWSkEETekFYeALs~fGTDFsLIs~-LFPgRTRrQIK~KFk 618 (689)
.-||..|..+|-+||..||-||.=|.+ ++|=++-+.|-.-|-
T Consensus 286 EEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYY 328 (693)
T KOG3554|consen 286 EEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYY 328 (693)
T ss_pred hhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHH
Confidence 679999999999999999999999988 789988888866553
No 19
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=73.29 E-value=3.2 Score=33.10 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHhhChHHHHHHHhcC
Q 005589 583 ETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNR 635 (689)
Q Consensus 583 ETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEERkNP~rV~~AL~~R 635 (689)
+.+.++.|+..||||-..|-.+|-+|+..|++.=+..=++.+..-|..+|...
T Consensus 2 DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e 54 (66)
T PF00191_consen 2 DAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKE 54 (66)
T ss_dssp HHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHH
T ss_pred HHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHh
Confidence 56789999999999999999999999988877766666666667777777653
No 20
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=72.32 E-value=6.3 Score=46.47 Aligned_cols=47 Identities=28% Similarity=0.555 Sum_probs=41.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC-CHHHHHhhCCCCCHHHHHHHhHHH
Q 005589 574 TPTVRWSKQETELFYEAIRQFGT-DLSMIQQLFPGRTRQQVKLKYKKE 620 (689)
Q Consensus 574 ~k~~RWSkEETekFYeALs~fGT-DFsLIs~LFPgRTRrQIK~KFkrE 620 (689)
.+-.+|+.+|-.+.+.|++.||- |.-.|.++||+|+-.|++..|.+=
T Consensus 358 ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 358 VKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNV 405 (939)
T ss_pred ccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHH
Confidence 45689999999999999999986 556788899999999999999863
No 21
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=71.69 E-value=5.5 Score=45.23 Aligned_cols=45 Identities=27% Similarity=0.493 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHH
Q 005589 575 PTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKK 619 (689)
Q Consensus 575 k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkr 619 (689)
..+.||.+|+.+.-+|+.|||-|+.-|+.-.-+||-.|+=.||.+
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~ 322 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQ 322 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHc
Confidence 345899999999999999999999999999999999999988853
No 22
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=67.39 E-value=10 Score=43.16 Aligned_cols=56 Identities=27% Similarity=0.456 Sum_probs=49.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHhhChHHHH
Q 005589 574 TPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLT 629 (689)
Q Consensus 574 ~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEERkNP~rV~ 629 (689)
.-..-||.+||-+.-+|+.|||-|...|+.---.||+.|+=.||.+.-...+-+-.
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LPieD~~l~~ 306 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLPIEDPYLAK 306 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcCccchhhhh
Confidence 45679999999999999999999999999999999999999999887666655444
No 23
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=48.66 E-value=15 Score=30.64 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHH------hcC--------CHHHHHhh----CCCCCHHHHHHHhHHHHhhC
Q 005589 577 VRWSKQETELFYEAIRQ------FGT--------DLSMIQQL----FPGRTRQQVKLKYKKEEREH 624 (689)
Q Consensus 577 ~RWSkEETekFYeALs~------fGT--------DFsLIs~L----FPgRTRrQIK~KFkrEERkN 624 (689)
..|+.+||..|...... |+. -|..|+.. -..||-.||+.||+.=.+.+
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 57999999999887665 321 35555553 34789999999998765554
No 24
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=46.81 E-value=8.9 Score=42.83 Aligned_cols=46 Identities=26% Similarity=0.507 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHhh-----CCC-CCHHHHHHHhHHHHh
Q 005589 577 VRWSKQETELFYEAIRQFGTDLSMIQQL-----FPG-RTRQQVKLKYKKEER 622 (689)
Q Consensus 577 ~RWSkEETekFYeALs~fGTDFsLIs~L-----FPg-RTRrQIK~KFkrEER 622 (689)
..||++||+..|+.-+.|-.-|-+|+-- |+. ||-..||.+|--=.|
T Consensus 131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r 182 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCR 182 (445)
T ss_pred ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHH
Confidence 6899999999999999999999999875 886 999999999965443
No 25
>PLN03162 golden-2 like transcription factor; Provisional
Probab=39.76 E-value=68 Score=36.21 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=36.0
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCC-------HHHHHhhCCCCCHHHHHH
Q 005589 569 SFMKKTPTVRWSKQETELFYEAIRQFGTD-------LSMIQQLFPGRTRQQVKL 615 (689)
Q Consensus 569 Sy~Kr~k~~RWSkEETekFYeALs~fGTD-------FsLIs~LFPgRTRrQIK~ 615 (689)
.-.+|+.+-+|+.+=-++|-+|+.+.|.| ..||. +++-||.+||.
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMn--V~GLTRenVKS 281 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMG--VQCLTRHNIAS 281 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcC--CCCcCHHHHHH
Confidence 34466788999999999999999999966 34443 77888888874
No 26
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=35.91 E-value=41 Score=34.09 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCC-HHHHHhhCC-CCCHHHHHHHhHHHHh
Q 005589 577 VRWSKQETELFYEAIRQFGTD-LSMIQQLFP-GRTRQQVKLKYKKEER 622 (689)
Q Consensus 577 ~RWSkEETekFYeALs~fGTD-FsLIs~LFP-gRTRrQIK~KFkrEER 622 (689)
..|+.||=++.=+-++.||.- ...|++.++ +|+-|+++..+.+.-|
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLr 57 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLR 57 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccC
Confidence 799999999999999999998 999999999 9999999998766543
No 27
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=31.54 E-value=42 Score=40.09 Aligned_cols=43 Identities=23% Similarity=0.476 Sum_probs=36.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcC-CHHHHHhhCCCCCHHHHHH
Q 005589 573 KTPTVRWSKQETELFYEAIRQFGT-DLSMIQQLFPGRTRQQVKL 615 (689)
Q Consensus 573 r~k~~RWSkEETekFYeALs~fGT-DFsLIs~LFPgRTRrQIK~ 615 (689)
+.+..+|+-.|-++...++.+||. .+.-|+.++|++|++|+.+
T Consensus 409 s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~r 452 (939)
T KOG0049|consen 409 SAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRR 452 (939)
T ss_pred hhccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHH
Confidence 357789999999999999999997 5677888999999988764
No 28
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=31.09 E-value=57 Score=38.35 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=45.0
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHH-------Hh-------------------cCCHHHHHhhCCCCCHHHHHHHh
Q 005589 564 FFNYQSFMKKTPTVRWSKQETELFYEAIR-------QF-------------------GTDLSMIQQLFPGRTRQQVKLKY 617 (689)
Q Consensus 564 lvNs~Sy~Kr~k~~RWSkEETekFYeALs-------~f-------------------GTDFsLIs~LFPgRTRrQIK~KF 617 (689)
..+|...+.+..+.+||.+|+++..+.+. ++ +...++|+.+.-.|+|-|++-||
T Consensus 424 wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw 503 (607)
T KOG0051|consen 424 WRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKW 503 (607)
T ss_pred HHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHH
Confidence 45566666556788999999999998874 44 45678999999999999999998
Q ss_pred HH
Q 005589 618 KK 619 (689)
Q Consensus 618 kr 619 (689)
.+
T Consensus 504 ~k 505 (607)
T KOG0051|consen 504 YK 505 (607)
T ss_pred HH
Confidence 54
No 29
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.85 E-value=1.6e+02 Score=32.41 Aligned_cols=57 Identities=21% Similarity=0.421 Sum_probs=50.9
Q ss_pred HHHHHHHHHH-HHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHhhChHHHHHHHhcCCC
Q 005589 581 KQETELFYEA-IRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRAK 637 (689)
Q Consensus 581 kEETekFYeA-Ls~fGTDFsLIs~LFPgRTRrQIK~KFkrEERkNP~rV~~AL~~R~~ 637 (689)
..|....|+| -..||||=...-.+|-.|+..||+.=|....+....-|..+|....-
T Consensus 174 ~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~ 231 (321)
T KOG0819|consen 174 KQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFS 231 (321)
T ss_pred HHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccC
Confidence 5677888887 46799999999999999999999999999999999999999987644
No 30
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=29.81 E-value=1.3e+02 Score=37.31 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCHHHHHhhCCCCCHHHHHHHh
Q 005589 576 TVRWSKQETELFYEAIRQFG-TDLSMIQQLFPGRTRQQVKLKY 617 (689)
Q Consensus 576 ~~RWSkEETekFYeALs~fG-TDFsLIs~LFPgRTRrQIK~KF 617 (689)
-..|+..|-..|-.|+..|| .|+..|+..+.++|..+|+.-.
T Consensus 824 f~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~ 866 (1033)
T PLN03142 824 FSTWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYA 866 (1033)
T ss_pred cCcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHH
Confidence 35799999999999999999 5799999999999999998643
Done!