Query 005589
Match_columns 689
No_of_seqs 130 out of 211
Neff 2.7
Searched_HMMs 29240
Date Tue Mar 26 19:04:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005589.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2093-2097//hhsearch_pdb/005589hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iw5_B Protein corest, REST co 1.0 1 1 59.9 6.0 51 573-623 130-180 (235)
2 2cu7_A KIAA1915 protein; nucle 1.0 1 1 59.5 7.0 52 572-623 5-56 (72)
3 2ltp_A Nuclear receptor corepr 1.0 1 1 57.3 0.0 50 574-623 14-63 (89)
4 2yqk_A Arginine-glutamic acid 1.0 1 1 55.8 6.9 48 572-619 5-53 (63)
5 2eqr_A N-COR1, N-COR, nuclear 1.0 1 1 55.8 6.9 53 568-620 4-56 (61)
6 2yus_A SWI/SNF-related matrix- 1.0 1 1 54.9 6.3 48 572-619 14-61 (79)
7 2xag_B REST corepressor 1; ami 1.0 1 1 54.5 6.5 48 574-621 378-425 (482)
8 2crg_A Metastasis associated p 1.0 1 1 52.6 6.5 47 573-619 5-52 (70)
9 1guu_A C-MYB, MYB proto-oncoge 1.0 1 1 51.2 6.5 46 575-620 2-48 (52)
10 2cqr_A RSGI RUH-043, DNAJ homo 1.0 1 1 51.0 5.4 46 575-620 17-66 (73)
No 1
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=1.00 E-value=1 Score=59.93 Aligned_cols=51 Identities=27% Similarity=0.472 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 799999998999999999997169899898529999989999984999833
Q 005589 573 KTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEERE 623 (689)
Q Consensus 573 r~k~~RWSkEETekFYeALs~fGTDFsLIsqLFP~RTRkQIK~KFkrEERk 623 (689)
.....+|+.+|..+|.+||+.||-||..|+.+.++||-.|||+-|..--|+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 766799898999999999999886899999775999999999999999998
No 2
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=1.00 E-value=1 Score=59.52 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=45.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 7799999998999999999997169899898529999989999984999833
Q 005589 572 KKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEERE 623 (689)
Q Consensus 572 Kr~k~~RWSkEETekFYeALs~fGTDFsLIsqLFP~RTRkQIK~KFkrEERk 623 (689)
.......|+.+|-++|.+++.+||.++..|+.+||+||..|||+.|..=-++
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 8867899799999999999999882999999885999999999999999988
No 3
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=57.34 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999998999999999997169899898529999989999984999833
Q 005589 574 TPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEERE 623 (689)
Q Consensus 574 ~k~~RWSkEETekFYeALs~fGTDFsLIsqLFP~RTRkQIK~KFkrEERk 623 (689)
.....||.+|-++|.+++..||.++..|+.+||+||.+|||+.|..-.|+
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
No 4
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=55.79 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=43.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH-HCCCCCHHHHHHHHHH
Q ss_conf 77999999989999999999971698998985-2999998999998499
Q 005589 572 KKTPTVRWSKQETELFYEAIRQFGTDLSMIQQ-LFPGRTRQQVKLKYKK 619 (689)
Q Consensus 572 Kr~k~~RWSkEETekFYeALs~fGTDFsLIsq-LFP~RTRkQIK~KFkr 619 (689)
.+.....||.+|..+|.+||.+||-||..|++ ++|.||..||..-|-.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHC
T ss_conf 8757898699999999999999684399999998599769998998705
No 5
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=55.75 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 34447799999998999999999997169899898529999989999984999
Q 005589 568 QSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKE 620 (689)
Q Consensus 568 ~SY~Kr~k~~RWSkEETekFYeALs~fGTDFsLIsqLFP~RTRkQIK~KFkrE 620 (689)
.+...+.....||.+|-.+|.++|.+||-+|..|+.++|+||..||..-|-.-
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 43333425899899999999999999687799999784999899999999885
No 6
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=54.93 Aligned_cols=48 Identities=23% Similarity=0.443 Sum_probs=43.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 779999999899999999999716989989852999998999998499
Q 005589 572 KKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKK 619 (689)
Q Consensus 572 Kr~k~~RWSkEETekFYeALs~fGTDFsLIsqLFP~RTRkQIK~KFkr 619 (689)
.......|+.+|..+|.++|.+||.+...|+.++|+||.+||+..|.+
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~ 61 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR 61 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 554589969999999999999949789999988389999999999998
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=1.00 E-value=1 Score=54.49 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 999999989999999999971698998985299999899999849998
Q 005589 574 TPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEE 621 (689)
Q Consensus 574 ~k~~RWSkEETekFYeALs~fGTDFsLIsqLFP~RTRkQIK~KFkrEE 621 (689)
..+.+|+.+|..+|.+||..||.||..|+.+.+.||-.|||+-|.+--
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 568999989999999999997868999997837998999999999999
No 8
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=1.00 E-value=1 Score=52.59 Aligned_cols=47 Identities=28% Similarity=0.491 Sum_probs=42.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH-HCCCCCHHHHHHHHHH
Q ss_conf 7999999989999999999971698998985-2999998999998499
Q 005589 573 KTPTVRWSKQETELFYEAIRQFGTDLSMIQQ-LFPGRTRQQVKLKYKK 619 (689)
Q Consensus 573 r~k~~RWSkEETekFYeALs~fGTDFsLIsq-LFP~RTRkQIK~KFkr 619 (689)
+.....||.+|..+|-+||.+||-||..|+. ++|+||-.||..-|=.
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 447899899999999999999696499999999599979999999871
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=1.00 E-value=1 Score=51.22 Aligned_cols=46 Identities=30% Similarity=0.566 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9999998999999999997169-899898529999989999984999
Q 005589 575 PTVRWSKQETELFYEAIRQFGT-DLSMIQQLFPGRTRQQVKLKYKKE 620 (689)
Q Consensus 575 k~~RWSkEETekFYeALs~fGT-DFsLIsqLFP~RTRkQIK~KFkrE 620 (689)
+..+||.+|-.++.+++..||+ +...|+..||+||.+||+..|..=
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 98999999999999999981899989999883799999999999987
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=1.00 E-value=1 Score=51.00 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHC----CCHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 999999899999999999716----9899898529999989999984999
Q 005589 575 PTVRWSKQETELFYEAIRQFG----TDLSMIQQLFPGRTRQQVKLKYKKE 620 (689)
Q Consensus 575 k~~RWSkEETekFYeALs~fG----TDFsLIsqLFP~RTRkQIK~KFkrE 620 (689)
....||.+|-.+|-+||.+|| .....|+.++|+||.+|||..|+.=
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 66 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 78998999999999999985998875599999981899999999999999
Done!