Query 005591
Match_columns 689
No_of_seqs 436 out of 4066
Neff 8.8
Searched_HMMs 29240
Date Wed Mar 27 00:53:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m3/005591.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H3_6-6//hhsearch_pdb/005591hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2c2a_A Sensor histidine kinase 1.0 1 1 262.3 31.3 230 391-641 12-249 (258)
2 1gkz_A [3-methyl-2-oxobutanoat 1.0 1 1 250.4 23.6 228 394-644 116-377 (388)
3 4ew8_A Sensor protein DIVL; si 1.0 1 1 248.3 29.9 233 385-644 26-260 (268)
4 2btz_A Pyruvate dehydrogenase 1.0 1 1 242.1 23.7 221 401-644 97-354 (394)
5 2q8g_A [pyruvate dehydrogenase 1.0 1 1 237.7 25.2 221 399-643 106-366 (407)
6 3jz3_A Sensor protein QSEC; he 1.0 1 1 236.1 13.3 217 399-643 2-220 (222)
7 2e0a_A Pyruvate dehydrogenase 1.0 1 1 235.5 29.9 219 401-643 97-353 (394)
8 3a0r_A Sensor protein; four he 1.0 1 1 234.5 23.5 214 397-641 130-346 (349)
9 1y8o_A [pyruvate dehydrogenase 1.0 1 1 231.3 24.2 219 401-643 120-377 (419)
10 3d36_A Sporulation kinase B; G 1.0 1 1 227.1 22.4 217 396-644 11-229 (244)
No 1
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=1.00 E-value=1 Score=262.32 Aligned_cols=230 Identities=29% Similarity=0.477 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999999999997530699999999998428---9999999999999999999999999999973420698323
Q 005591 391 EAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET---DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLEL 467 (689)
Q Consensus 391 ~~~~a~~~~~~~~~~isHelr~PL~~I~~~~~lL~~~---~~~~e~~~~l~~i~~~~~~l~~li~~ll~~sr~~~~~~~l 467 (689)
++++..+.+.+|++.++||+||||++|.++++++.+. ...++.+++++.+.+.+.++..++++++++++.+.+...+
T Consensus 12 ~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~ 91 (258)
T 2c2a_A 12 RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQI 91 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999998700341587899999999998422478999999999999999999999999999998852788667
Q ss_pred CCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCC----CEEEEEEEEC
Q ss_conf 320011999999999998864540794589995899981588169899999999999994258999----1899998606
Q 005591 468 DNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG----YVSIIASVAK 543 (689)
Q Consensus 468 ~~~~~~L~~li~~~~~~~~~~~~~~~i~i~~~i~~~lp~~v~~D~~~l~qil~nLi~NAik~~~~g----~i~i~~~~~~ 543 (689)
..+++++.++++++...+...+..+++.+.++.....+..+.+|+.++.+++.||+.||+||++.+ .+.+.+...+
T Consensus 92 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~ 171 (258)
T 2c2a_A 92 NREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKD 171 (258)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEET
T ss_pred CCCEECHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC
T ss_conf 66135599999999999999999769679850488988258749999999999999989852747898636999995479
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHCCEEEE
Q ss_conf 988889999986766789913999999764989997993444107833589999-8999662489999999994999999
Q 005591 544 PESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC-QTPRAGLGLAICRRFVNLMGGHIWL 622 (689)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~-~~~g~GLGL~i~k~iv~~~gG~I~i 622 (689)
+ .+.+.|+|+|+||+++..+++|+||++.+.... ...|+||||++|+++++.|||+|++
T Consensus 172 ~--------------------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v 231 (258)
T 2c2a_A 172 G--------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWV 231 (258)
T ss_dssp T--------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEE
T ss_pred C--------------------EEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 8--------------------69999996589889789886626651578887779997615799999999986998999
Q ss_pred EEECCCCCEEEEEEEEECC
Q ss_conf 9606998279999998247
Q 005591 623 DSEGLDKGSTVTFLVKLGI 641 (689)
Q Consensus 623 ~s~~~g~Gt~~~i~lpl~~ 641 (689)
+|. +|.||+|++.||...
T Consensus 232 ~s~-~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 232 ESE-VGKGSRFFVWIPKDR 249 (258)
T ss_dssp EEE-TTTEEEEEEEEECCC
T ss_pred EEC-CCCCCEEEEEEECCC
T ss_conf 863-899828999960787
No 2
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=1.00 E-value=1 Score=250.42 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9999999999999997530699999-999998428999999999999999999999999999997342069832332001
Q 005591 394 KAIHARNDFRAVMNHEMRTLMHAII-ALSSLLLETDLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPF 472 (689)
Q Consensus 394 ~a~~~~~~~~~~isHelr~PL~~I~-~~~~lL~~~~~~~e~~~~l~~i~~~~~~l~~li~~ll~~sr~~~~~~~l~~~~~ 472 (689)
+.++.+.++++.++|++++||+.|. ++.+++.....+++.+++++.+.++..++..++++++++++.+.+...+...++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCC
T ss_conf 89999999999999874328999999999998622682889999999999899999999999987245898201023788
Q ss_pred EHHHHHHHHHHHHHHHHHCC---CCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCC---------CEEEEEE
Q ss_conf 19999999999988645407---94589995899981588169899999999999994258999---------1899998
Q 005591 473 NLQIVLREVIKLIKPVASCK---KLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEG---------YVSIIAS 540 (689)
Q Consensus 473 ~L~~li~~~~~~~~~~~~~~---~i~i~~~i~~~lp~~v~~D~~~l~qil~nLi~NAik~~~~g---------~i~i~~~ 540 (689)
++.+++++++..++..+..+ .+.+.+..+.+ ..+.+|+.++.+|+.||+.||+||+..| .|.+.+.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~--~~~~~~~~~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~ 273 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA--ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIA 273 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT--CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC--CCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
T ss_conf 8999999999999999998518997079970478--71565489999999999999999855015677888998899999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCC---------------------CC
Q ss_conf 606988889999986766789913999999764989997993444107833589999---------------------89
Q 005591 541 VAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSC---------------------QT 599 (689)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~---------------------~~ 599 (689)
..++ ++.|.|+|+|+||+++.++++|++|++++.... ..
T Consensus 274 ~~~~--------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (388)
T 1gkz_A 274 NNDV--------------------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPM 333 (388)
T ss_dssp ECSS--------------------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CC
T ss_pred ECCC--------------------EEEEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf 4798--------------------79999998078869789887638445057886554432210000012455678986
Q ss_pred CCCCCHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf 996624899999999949999999606998279999998247889
Q 005591 600 PRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNN 644 (689)
Q Consensus 600 ~g~GLGL~i~k~iv~~~gG~I~i~s~~~g~Gt~~~i~lpl~~~~~ 644 (689)
.|+|+||++||.+++.|||+|+++|. +|.||+|++.||......
T Consensus 334 ~G~GLGL~i~r~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~~~ 377 (388)
T 1gkz_A 334 HGFGFGLPTSRAYAEYLGGSLQLQSL-QGIGTDVYLRLRHIDGRE 377 (388)
T ss_dssp SCSSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEECSSSCC
T ss_pred CCCCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCCCC
T ss_conf 87267899999999996997899963-898479999953899888
No 3
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=1.00 E-value=1 Score=248.32 Aligned_cols=233 Identities=27% Similarity=0.376 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999999997530699999999998428-999999999999999999999999999997342069
Q 005591 385 LDSARREAEKAIHARNDFRAVMNHEMRTLMHAIIALSSLLLET-DLTPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDG 463 (689)
Q Consensus 385 l~~a~~~~~~a~~~~~~~~~~isHelr~PL~~I~~~~~lL~~~-~~~~e~~~~l~~i~~~~~~l~~li~~ll~~sr~~~~ 463 (689)
+.+..+++++..+.+..|++.++||+|+||+.|.++++++.+. ..+++.+++++.+....+++..++++++++++.+.+
T Consensus 26 l~~~~~~l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~ 105 (268)
T 4ew8_A 26 LADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAG 105 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999988987528999999999986266898899999999999999999999999999986447
Q ss_pred CCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEEE
Q ss_conf 832332001199999999999886454079458999589998158816989999999999999425899-9189999860
Q 005591 464 SLELDNGPFNLQIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKE-GYVSIIASVA 542 (689)
Q Consensus 464 ~~~l~~~~~~L~~li~~~~~~~~~~~~~~~i~i~~~i~~~lp~~v~~D~~~l~qil~nLi~NAik~~~~-g~i~i~~~~~ 542 (689)
.......++++..+++++...+...+..+++.+.++.+.+.+. +.+|+..+.+++.||+.||++|++. +.+.+.+...
T Consensus 106 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~~-v~~d~~~l~~il~nLl~NA~~~~~~~~~I~i~~~~~ 184 (268)
T 4ew8_A 106 EMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVGL-IRGDGKRLAQTLDHLVENALRQTPPGGRVTLSARRA 184 (268)
T ss_dssp CCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSCE-EEECHHHHHHHHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCE-EECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 7612666336999999999998765420382499981887826-856999999999999999997189997799999966
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEE
Q ss_conf 69888899999867667899139999997649899979934441078335899998999662489999999994999999
Q 005591 543 KPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWL 622 (689)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GLGL~i~k~iv~~~gG~I~i 622 (689)
++ .+.|.|+|+|+||+++..+++|++|++.+. .|+|+||++|+++++.|||+|++
T Consensus 185 ~~--------------------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~-----~g~GlGL~i~~~~~~~~gG~i~i 239 (268)
T 4ew8_A 185 LG--------------------EVRLDVSDTGRGVPFHVQAHIFDRFVGRDR-----GGPGLGLALVKALVELHGGWVAL 239 (268)
T ss_dssp SS--------------------EEEEEEEESSCCCCHHHHTTTTSTTCCCSS-----CCCTTHHHHHHHHHHHTTCEEEE
T ss_pred CC--------------------EEEEEEECCCCCCCHHHHHHHHHHHHCCCC-----CCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 98--------------------799999738999898999988889866899-----99843399999999983998999
Q ss_pred EEECCCCCEEEEEEEEECCCCC
Q ss_conf 9606998279999998247889
Q 005591 623 DSEGLDKGSTVTFLVKLGICNN 644 (689)
Q Consensus 623 ~s~~~g~Gt~~~i~lpl~~~~~ 644 (689)
++. +|.|++|++.||....+.
T Consensus 240 ~s~-~~~Gt~~~i~lP~~~~~~ 260 (268)
T 4ew8_A 240 ESE-PGNGSTFTCHLPETQQPG 260 (268)
T ss_dssp EEC-TTSCEEEEEEEECCC---
T ss_pred EEC-CCCCEEEEEEECCCCCCC
T ss_conf 966-999779999936888988
No 4
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=1.00 E-value=1 Score=242.10 Aligned_cols=221 Identities=16% Similarity=0.179 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHC-----HHHHHHHHHHHHHCCCCCHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHC-CCCCCC
Q ss_conf 999999997530-----69999999999842899999----999999--999999999999999999734206-983233
Q 005591 401 DFRAVMNHEMRT-----LMHAIIALSSLLLETDLTPE----QRVMIE--TVLKSSNLLTTLVDDVLDLSRLED-GSLELD 468 (689)
Q Consensus 401 ~~~~~isHelr~-----PL~~I~~~~~lL~~~~~~~e----~~~~l~--~i~~~~~~l~~li~~ll~~sr~~~-~~~~l~ 468 (689)
+++..++||+|| |++.|.++++++.+...++. ...+++ .+.+.+.++ ++++++++++.+. +.....
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCC
T ss_conf 9999999999850220179999999999876057866689999999999985327999--99999998522246788764
Q ss_pred C----EEEEHHHHHHHHHHHHHHHHHC-----CCCEEEEEE--CCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCC---
Q ss_conf 2----0011999999999998864540-----794589995--8999815881698999999999999942589991---
Q 005591 469 N----GPFNLQIVLREVIKLIKPVASC-----KKLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 534 (689)
Q Consensus 469 ~----~~~~L~~li~~~~~~~~~~~~~-----~~i~i~~~i--~~~lp~~v~~D~~~l~qil~nLi~NAik~~~~g~--- 534 (689)
. +++++.+++++++..++..+.. +++.+.+.. .+..+..+.+|+.++.+++.||+.||+||+..|+
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 254 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFELFKNAMRATVESHESS 254 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 02026887899999999999999999961789976999722678887738995589999999999999999765025667
Q ss_pred -----EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCC------CCCCCCCC
Q ss_conf -----8999986069888899999867667899139999997649899979934441078335899------99899966
Q 005591 535 -----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------SCQTPRAG 603 (689)
Q Consensus 535 -----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~~~~g~G 603 (689)
|.+.+...++ .+.|.|+|+|+||+++.++++|++|++++.. .....|+|
T Consensus 255 ~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~G 314 (394)
T 2btz_A 255 LILPPIKVMVALGEE--------------------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFG 314 (394)
T ss_dssp SCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------C
T ss_pred CCCCCEEEEEEECCC--------------------EEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 889987999980798--------------------799999967999797999898563566789877666779878744
Q ss_pred CHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEECCCCC
Q ss_conf 24899999999949999999606998279999998247889
Q 005591 604 LGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICNN 644 (689)
Q Consensus 604 LGL~i~k~iv~~~gG~I~i~s~~~g~Gt~~~i~lpl~~~~~ 644 (689)
+||++||.+++.|||+|+++|. +|.||+|++.||......
T Consensus 315 LGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~~~ 354 (394)
T 2btz_A 315 YGLPISRLYAKYFQGDLQLFSM-EGFGTDAVIYLKALSTDS 354 (394)
T ss_dssp CHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSTTTC
T ss_pred CCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCCCC
T ss_conf 7899999999995997899962-798569999963898777
No 5
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=1.00 E-value=1 Score=237.74 Aligned_cols=221 Identities=17% Similarity=0.217 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHC-----HHHHHHHHHHHHHCCCCC----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC----C
Q ss_conf 99999999997530-----699999999998428999----999999999--99999999999999999734206----9
Q 005591 399 RNDFRAVMNHEMRT-----LMHAIIALSSLLLETDLT----PEQRVMIET--VLKSSNLLTTLVDDVLDLSRLED----G 463 (689)
Q Consensus 399 ~~~~~~~isHelr~-----PL~~I~~~~~lL~~~~~~----~e~~~~l~~--i~~~~~~l~~li~~ll~~sr~~~----~ 463 (689)
...|.+.+ ||+|| ||+.|.++++++.....+ ++.+.+++. +.+.+.++ ++++++++++.+. +
T Consensus 106 ~~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~ 182 (407)
T 2q8g_A 106 IYDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPS 182 (407)
T ss_dssp HHHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC--------
T ss_pred HHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCC
T ss_conf 99999999-999864110259999999999876356866789999999999999999999--999999984543356788
Q ss_pred ---CCCCCCEEEEHHHHHHHHHHHHHHHHHCC-----CCEEEEEE--CCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ---83233200119999999999988645407-----94589995--899981588169899999999999994258999
Q 005591 464 ---SLELDNGPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEG 533 (689)
Q Consensus 464 ---~~~l~~~~~~L~~li~~~~~~~~~~~~~~-----~i~i~~~i--~~~lp~~v~~D~~~l~qil~nLi~NAik~~~~g 533 (689)
.......++++.+++++++..++..+..+ ++.+.++. .+..+..+.+|+.++.+++.||+.||+||+..+
T Consensus 183 ~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~ 262 (407)
T 2q8g_A 183 HRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELFKNAMRATMEH 262 (407)
T ss_dssp --CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 84622544577889999999999999999985178995699996347889872799759999999999999999987611
Q ss_pred --------CEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCC-------CCC
Q ss_conf --------18999986069888899999867667899139999997649899979934441078335899-------998
Q 005591 534 --------YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS-------SCQ 598 (689)
Q Consensus 534 --------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~-------~~~ 598 (689)
.|.+.+...++ .+.|.|+|+|+||+++.++++|++|++++.. ...
T Consensus 263 ~~~~~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~ 322 (407)
T 2q8g_A 263 HANRGVYPPIQVHVTLGNE--------------------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVP 322 (407)
T ss_dssp STTTCCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCC
T ss_pred CCCCCCCCCEEEEEEECCC--------------------EEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 5667889977999996898--------------------79999996689889799998847555078887766667798
Q ss_pred CCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEECCCC
Q ss_conf 999662489999999994999999960699827999999824788
Q 005591 599 TPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 643 (689)
Q Consensus 599 ~~g~GLGL~i~k~iv~~~gG~I~i~s~~~g~Gt~~~i~lpl~~~~ 643 (689)
..|+|+||++||.+++.|||+|+++|. +|.||+|++.||.....
T Consensus 323 ~~G~GLGL~Ivr~i~~~~gG~i~v~s~-~g~Gt~f~i~LP~~~~~ 366 (407)
T 2q8g_A 323 LAGFGYGLPISRLYAQYFQGDLKLYSL-EGYGTDAVIYIKALSTD 366 (407)
T ss_dssp SSCTTCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSGGG
T ss_pred CCCCCCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCCC
T ss_conf 787077889999999982997999974-89856999997789987
No 6
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=1.00 E-value=1 Score=236.11 Aligned_cols=217 Identities=22% Similarity=0.285 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHH
Q ss_conf 99999999997530699999999998428999-99999999999999999999999999734206983233200119999
Q 005591 399 RNDFRAVMNHEMRTLMHAIIALSSLLLETDLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQIV 477 (689)
Q Consensus 399 ~~~~~~~isHelr~PL~~I~~~~~lL~~~~~~-~e~~~~l~~i~~~~~~l~~li~~ll~~sr~~~~~~~l~~~~~~L~~l 477 (689)
+.+|++.++||+||||++|.++++++.....+ ++.+++++.+.+.++++..++++++++++.+.+.......++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 77899997687447599999999998643588478999999999999999999999998997413587667355779999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCE-EEEEEEECCCCCCCCCCCCCC
Q ss_conf 9999999886454079458999589998158816989999999999999425899918-999986069888899999867
Q 005591 478 LREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTKEGYV-SIIASVAKPESLSDWRPPEFY 556 (689)
Q Consensus 478 i~~~~~~~~~~~~~~~i~i~~~i~~~lp~~v~~D~~~l~qil~nLi~NAik~~~~g~i-~i~~~~~~~~~~~~~~~~~~~ 556 (689)
+++++..+...+..+++.+.++.+...+ .+.+|+..+.+++.||+.||++|++.+.. .+.+ ...
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~il~nLl~NAi~~~~~~~~i~i~~--~~~------------ 146 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI-KRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTL--NAD------------ 146 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC-EEEECHHHHHHHHHHHHHHHHHTCCTTCEEEEEE--CSS------------
T ss_pred HHHHHHHHHHHHHHHCCEEEEEECCCCE-EEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEE--CCC------------
T ss_conf 9999998777899708758986088650-7736899999999999999987398998699997--267------------
Q ss_pred CCCCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEE
Q ss_conf 66789913999999764989997993444107833589999899966248999999999499999996069982799999
Q 005591 557 PVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFL 636 (689)
Q Consensus 557 ~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GLGL~i~k~iv~~~gG~I~i~s~~~g~Gt~~~i~ 636 (689)
.+.|+|+|+||+++..+++|++|++.+.. ...|+|+||++|+++++.|||+|+++|. +|+||+|++.
T Consensus 147 ----------~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--~~~g~GlGL~i~~~i~~~~gG~i~i~s~-~~~Gt~v~~~ 213 (222)
T 3jz3_A 147 ----------NFIVRDNGPGVTPEALARIGERFYRPPGQ--TATGSGLGLSIVQRIAKLHGMNVEFGNA-EQGGFEAKVS 213 (222)
T ss_dssp ----------EEEEECSCC----------------------------CTHHHHHHHHHHTTCEEECCBC-TTSSBEEEEE
T ss_pred ----------EEEEEECCCCCCHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHHHHCCCEEEEECC-CCCCEEEEEE
T ss_conf ----------38998789997999999998632508999--9995463599999999984998999728-9995799996
Q ss_pred EEECCCC
Q ss_conf 9824788
Q 005591 637 VKLGICN 643 (689)
Q Consensus 637 lpl~~~~ 643 (689)
+|....+
T Consensus 214 ~P~~~~~ 220 (222)
T 3jz3_A 214 WLEHHHH 220 (222)
T ss_dssp CCCC---
T ss_pred ECCCCCC
T ss_conf 3677998
No 7
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=1.00 E-value=1 Score=235.48 Aligned_cols=219 Identities=16% Similarity=0.185 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHC-----HHHHHHHHHHHHHCCC----CCHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHCCCCCCC
Q ss_conf 999999997530-----6999999999984289----9999999999--999999999999999999-734206983233
Q 005591 401 DFRAVMNHEMRT-----LMHAIIALSSLLLETD----LTPEQRVMIE--TVLKSSNLLTTLVDDVLD-LSRLEDGSLELD 468 (689)
Q Consensus 401 ~~~~~isHelr~-----PL~~I~~~~~lL~~~~----~~~e~~~~l~--~i~~~~~~l~~li~~ll~-~sr~~~~~~~l~ 468 (689)
.++..++||+|| |++.|.++++++.... ..++.+.+++ .+.+.+.++ +++++++ +++. .+..+..
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCC-CCCCCCC
T ss_conf 9999999999863100078999999999866435755689999999999999899999--999999986144-6788873
Q ss_pred C----EEEEHHHHHHHHHHHHHHHHHCC-----CCEEEEEE--CCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCC---
Q ss_conf 2----00119999999999988645407-----94589995--8999815881698999999999999942589991---
Q 005591 469 N----GPFNLQIVLREVIKLIKPVASCK-----KLSMTLIM--APELPTYAVGDEKRLMQTILNIVGNAVKFTKEGY--- 534 (689)
Q Consensus 469 ~----~~~~L~~li~~~~~~~~~~~~~~-----~i~i~~~i--~~~lp~~v~~D~~~l~qil~nLi~NAik~~~~g~--- 534 (689)
. .++++.+++++++..++..+..+ ++.+.+++ .+..+..+.+|+.++.+++.||+.||+||+..++
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~~~~~~~~~ 253 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHQENQ 253 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 03015777799999999999999999851899966999722577898727997489999999999999999987315666
Q ss_pred -----EEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCC------CC-CCCCC
Q ss_conf -----8999986069888899999867667899139999997649899979934441078335899------99-89996
Q 005591 535 -----VSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------SC-QTPRA 602 (689)
Q Consensus 535 -----i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~-~~~g~ 602 (689)
|.+.+...++ .+.|.|+|+|+||+++.++++|++|++++.. .. ...|+
T Consensus 254 ~~~~~I~I~~~~~~~--------------------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~ 313 (394)
T 2e0a_A 254 PSLTPIEVIVVLGKE--------------------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGF 313 (394)
T ss_dssp SSCCCEEEEEEECSS--------------------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCS
T ss_pred CCCCCEEEEEEECCC--------------------EEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 889987999995798--------------------799999967999597898787576762789877676777897872
Q ss_pred CCHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEECCCC
Q ss_conf 62489999999994999999960699827999999824788
Q 005591 603 GLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 643 (689)
Q Consensus 603 GLGL~i~k~iv~~~gG~I~i~s~~~g~Gt~~~i~lpl~~~~ 643 (689)
|+||++||.+++.|||+|+++|. +|.|++|++.||.....
T Consensus 314 GLGL~i~~~i~~~~gG~i~v~s~-~g~Gt~f~i~lP~~~~~ 353 (394)
T 2e0a_A 314 GYGLPISRLYAKYFQGDLNLYSL-SGYGTDAIIYLKALSSE 353 (394)
T ss_dssp SCHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESSGGG
T ss_pred CCCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCCC
T ss_conf 26899999999994997999954-89637999996799987
No 8
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=234.46 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHH
Q ss_conf 999999999999753069999999999842899-9999999999999999999999999997342069832332001199
Q 005591 397 HARNDFRAVMNHEMRTLMHAIIALSSLLLETDL-TPEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNLQ 475 (689)
Q Consensus 397 ~~~~~~~~~isHelr~PL~~I~~~~~lL~~~~~-~~e~~~~l~~i~~~~~~l~~li~~ll~~sr~~~~~~~l~~~~~~L~ 475 (689)
+.++.|++.++||++|||+.|.++++++.+... +++.+++++.+...++++..++++++++++. ...+...++++.
T Consensus 130 ~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~ 206 (349)
T 3a0r_A 130 SILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLN 206 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCHH
T ss_conf 99999998878876464999999999998630691899999999999999999999999998377---555677425799
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 99999999988645407945899958999815881698999999999999942589-99189999860698888999998
Q 005591 476 IVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPESLSDWRPPE 554 (689)
Q Consensus 476 ~li~~~~~~~~~~~~~~~i~i~~~i~~~lp~~v~~D~~~l~qil~nLi~NAik~~~-~g~i~i~~~~~~~~~~~~~~~~~ 554 (689)
++++++...+...+..+++.+.++.++..+ .+.+|+..+.+++.||+.||+||++ .|.+.+.+...++
T Consensus 207 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~d~~~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~---------- 275 (349)
T 3a0r_A 207 ELIREVYVLFEEKIRKMNIDFCFETDNEDL-RVEADRTRIKQVLINLVQNAIEATGENGKIKITSEDMYT---------- 275 (349)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCEEEESCSCC-EEEECHHHHHHHHHHHHTHHHHTTCTTCCEEEEEEEETT----------
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCC-EEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC----------
T ss_conf 999999999999999769689995488884-598689999999999999999865579779999995598----------
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHCCEEEEEEECCCCCEEE
Q ss_conf 676678991399999976498999799344410783358999989996624899999999-9499999996069982799
Q 005591 555 FYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVN-LMGGHIWLDSEGLDKGSTV 633 (689)
Q Consensus 555 ~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GLGL~i~k~iv~-~~gG~I~i~s~~~g~Gt~~ 633 (689)
.+.+.|+|+|+||+++..+++|+||++++. .|+|+||++|+++++ .|||.+++++. + +|++|
T Consensus 276 ----------~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~-----~g~GlGL~i~~~~v~~~~gg~i~~~~~-~-~Gt~f 338 (349)
T 3a0r_A 276 ----------KVRVSVWNSGPPIPEELKEKIFSPFFTTKT-----QGTGLGLSICRKIIEDEHGGKIWTENR-E-NGVVF 338 (349)
T ss_dssp ----------EEEEEEEEESCCCCGGGGTTTSSSCCCC-----------CCCTHHHHHHHHTTCSBCCEEEC-S-SEEEE
T ss_pred ----------EEEEEEEECCCCCCHHHHHHCCCCCCCCCC-----CCCCCHHHHHHHHHHHHCCCEEEEEEC-C-CCEEE
T ss_conf ----------899999989999796799553888730799-----983110999999999718977999807-9-94799
Q ss_pred EEEEEECC
Q ss_conf 99998247
Q 005591 634 TFLVKLGI 641 (689)
Q Consensus 634 ~i~lpl~~ 641 (689)
++.||...
T Consensus 339 ~i~lP~~~ 346 (349)
T 3a0r_A 339 IFEIPKTP 346 (349)
T ss_dssp EEEEESCT
T ss_pred EEEECCCC
T ss_conf 99932897
No 9
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=1.00 E-value=1 Score=231.32 Aligned_cols=219 Identities=17% Similarity=0.221 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHCHHH-----HHHHHHHHHHCCCCC----HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-CCCCCCC
Q ss_conf 999999997530699-----999999998428999----9999999999999--999999999999973420-6983233
Q 005591 401 DFRAVMNHEMRTLMH-----AIIALSSLLLETDLT----PEQRVMIETVLKS--SNLLTTLVDDVLDLSRLE-DGSLELD 468 (689)
Q Consensus 401 ~~~~~isHelr~PL~-----~I~~~~~lL~~~~~~----~e~~~~l~~i~~~--~~~l~~li~~ll~~sr~~-~~~~~l~ 468 (689)
+|.. ++||+||||+ .|.++++++.....+ ++...+++.+... +.++ ++++++..++.. .+..+..
T Consensus 120 ~f~~-~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~~ 196 (419)
T 1y8o_A 120 NFLQ-VLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPKH 196 (419)
T ss_dssp HHHH-HHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTTS
T ss_pred HHHH-HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCC
T ss_conf 9999-99998541166699999999999987466866689999999999998888999--99999998602246778775
Q ss_pred ----CEEEEHHHHHHHHHHHHHHHHHC-----CCCEEEEEEC--CCCCCEEECCHHHHHHHHHHHHHHHHHCCCCC----
Q ss_conf ----20011999999999998864540-----7945899958--99981588169899999999999994258999----
Q 005591 469 ----NGPFNLQIVLREVIKLIKPVASC-----KKLSMTLIMA--PELPTYAVGDEKRLMQTILNIVGNAVKFTKEG---- 533 (689)
Q Consensus 469 ----~~~~~L~~li~~~~~~~~~~~~~-----~~i~i~~~i~--~~lp~~v~~D~~~l~qil~nLi~NAik~~~~g---- 533 (689)
.+++++.+++++++..++..+.. +++.+.+... +..+..+.+|+.++.+|+.||+.||+||+..+
T Consensus 197 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~L~~vl~NLl~NAik~~~~~~~~~ 276 (419)
T 1y8o_A 197 IGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDR 276 (419)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 45226768899999999999999999850889967999630477899848997399999999999999999987513566
Q ss_pred -----CEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCC------C-CCCCC
Q ss_conf -----18999986069888899999867667899139999997649899979934441078335899------9-98999
Q 005591 534 -----YVSIIASVAKPESLSDWRPPEFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGS------S-CQTPR 601 (689)
Q Consensus 534 -----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~-~~~~g 601 (689)
.|.+.+...++ .+.|.|+|+|+||+++.++++|++|++++.. . ....|
T Consensus 277 ~~~~~~I~I~~~~~~~--------------------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G 336 (419)
T 1y8o_A 277 KEGYPAVKTLVTLGKE--------------------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAG 336 (419)
T ss_dssp SSCCCCEEEEEEECSS--------------------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC--
T ss_pred CCCCCCEEEEEEECCC--------------------EEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7789978999995798--------------------79999997999979899998837334168887766667788687
Q ss_pred CCCHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEEEEECCCC
Q ss_conf 662489999999994999999960699827999999824788
Q 005591 602 AGLGLAICRRFVNLMGGHIWLDSEGLDKGSTVTFLVKLGICN 643 (689)
Q Consensus 602 ~GLGL~i~k~iv~~~gG~I~i~s~~~g~Gt~~~i~lpl~~~~ 643 (689)
+|+||++||.+++.|||+|+++|. +|.||+|++.||.....
T Consensus 337 ~GLGL~I~k~iv~~~gG~I~v~s~-~g~Gt~f~i~LP~~~~~ 377 (419)
T 1y8o_A 337 FGYGLPISRLYARYFQGDLKLYSM-EGVGTDAVIYLKALSSE 377 (419)
T ss_dssp CTTHHHHHHHHHHHTTCEEEEEEE-TTTEEEEEEEEESCGGG
T ss_pred EECCHHHHHHHHHHHCCEEEEEEC-CCCCEEEEEEECCCCCC
T ss_conf 405899999999996997999964-89977999996588877
No 10
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=1.00 E-value=1 Score=227.05 Aligned_cols=217 Identities=21% Similarity=0.432 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEH
Q ss_conf 99999999999997530699999999998428999-99999999999999999999999999734206983233200119
Q 005591 396 IHARNDFRAVMNHEMRTLMHAIIALSSLLLETDLT-PEQRVMIETVLKSSNLLTTLVDDVLDLSRLEDGSLELDNGPFNL 474 (689)
Q Consensus 396 ~~~~~~~~~~isHelr~PL~~I~~~~~lL~~~~~~-~e~~~~l~~i~~~~~~l~~li~~ll~~sr~~~~~~~l~~~~~~L 474 (689)
.+.++.|++.++||+|+||+.|.++++++.+...+ ++.+++++.+.+..+++..++++++++++.... ...++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHH
T ss_conf 999999999866975467999999999987063580679999999999999999999999998731568----8631257
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCC
Q ss_conf 999999999988645407945899958999815881698999999999999942589-9918999986069888899999
Q 005591 475 QIVLREVIKLIKPVASCKKLSMTLIMAPELPTYAVGDEKRLMQTILNIVGNAVKFTK-EGYVSIIASVAKPESLSDWRPP 553 (689)
Q Consensus 475 ~~li~~~~~~~~~~~~~~~i~i~~~i~~~lp~~v~~D~~~l~qil~nLi~NAik~~~-~g~i~i~~~~~~~~~~~~~~~~ 553 (689)
..+++++...+...+..+++.+.+..++ ..+.+|+..+.+++.||+.||++|++ ++.+.+.+...++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~--------- 154 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP---FSVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNG--------- 154 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC---CEEEECHHHHHHHHHHHHHHHHHTCTTCEEEEEEEEEETT---------
T ss_pred HHHHHHHHHHHHHHHHHCCEEEECCCCC---CEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECC---------
T ss_conf 9999999999999987427287236887---3689679999999999999999964679818999998599---------
Q ss_pred CCCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCEEE
Q ss_conf 86766789913999999764989997993444107833589999899966248999999999499999996069982799
Q 005591 554 EFYPVSTDGHFYLRVQVNDSGCGVPPQDIPLLFTKFAQSRGSSCQTPRAGLGLAICRRFVNLMGGHIWLDSEGLDKGSTV 633 (689)
Q Consensus 554 ~~~~~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~g~GLGL~i~k~iv~~~gG~I~i~s~~~g~Gt~~ 633 (689)
++.|.|+|+|+|++++..+++|++|++++. ..|.|+||++|+++++.|||++++++. ++.|++|
T Consensus 155 -----------~~~i~i~D~G~gi~~~~~~~if~~~~~~~~----~~g~GlGL~i~~~i~~~~gG~i~~~~~-~~~G~~~ 218 (244)
T 3d36_A 155 -----------RVLIRIADTGVGMTKEQLERLGEPYFTTKG----VKGTGLGMMVVYRIIESMNGTIRIESE-IHKGTTV 218 (244)
T ss_dssp -----------EEEEEEEECSSCCCHHHHHHTTSTTCCSSG----GGCCSCHHHHHHHHHHHTTCEEEEEEE-TTTEEEE
T ss_pred -----------EEEEEEEECCCCCCHHHHHHHHCCCCCCCC----CCCCCHHHHHHHHHHHHCCCEEEEEEC-CCCCEEE
T ss_conf -----------899999725899798999988563302789----887652599999999985998999966-9991799
Q ss_pred EEEEEECCCCC
Q ss_conf 99998247889
Q 005591 634 TFLVKLGICNN 644 (689)
Q Consensus 634 ~i~lpl~~~~~ 644 (689)
++.||+...+.
T Consensus 219 ~i~lP~~~~~~ 229 (244)
T 3d36_A 219 SIYLPLASSPS 229 (244)
T ss_dssp EEEEECCC---
T ss_pred EEEECCCCCCC
T ss_conf 99951899987
Done!