Query 005592
Match_columns 689
No_of_seqs 525 out of 3365
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 01:53:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1.4E-34 2.9E-39 316.6 26.5 334 135-568 24-364 (493)
2 KOG4277 Uncharacterized conser 100.0 1.7E-31 3.8E-36 268.2 22.0 278 151-506 41-329 (468)
3 TIGR01130 ER_PDI_fam protein d 100.0 1.7E-26 3.7E-31 258.8 27.8 332 137-566 2-343 (462)
4 PTZ00102 disulphide isomerase; 99.9 1.6E-24 3.4E-29 244.6 27.6 318 137-567 33-355 (477)
5 KOG0713 Molecular chaperone (D 99.9 5.5E-24 1.2E-28 220.3 7.4 134 35-181 14-153 (336)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.8 1.6E-20 3.4E-25 171.0 7.2 100 137-249 10-113 (113)
7 KOG0912 Thiol-disulfide isomer 99.8 5.5E-19 1.2E-23 179.3 18.4 214 141-378 1-222 (375)
8 COG0484 DnaJ DnaJ-class molecu 99.8 1.8E-20 4E-25 199.3 7.9 70 36-105 3-75 (371)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.4E-19 3E-24 161.1 6.5 100 137-249 2-101 (101)
10 PF01216 Calsequestrin: Calseq 99.8 7E-17 1.5E-21 167.4 26.4 333 123-549 25-369 (383)
11 cd03007 PDI_a_ERp29_N PDIa fam 99.8 3.1E-19 6.8E-24 162.1 6.0 103 138-252 3-115 (116)
12 KOG0191 Thioredoxin/protein di 99.8 8.2E-18 1.8E-22 185.1 17.7 211 139-366 32-254 (383)
13 KOG0712 Molecular chaperone (D 99.8 8.2E-19 1.8E-23 184.3 7.4 70 36-105 3-72 (337)
14 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 1.2E-18 2.7E-23 155.7 6.1 101 137-249 2-104 (104)
15 cd02996 PDI_a_ERp44 PDIa famil 99.7 1.3E-18 2.8E-23 156.9 6.2 101 137-249 2-108 (108)
16 PF00085 Thioredoxin: Thioredo 99.7 1E-17 2.3E-22 148.2 5.9 102 138-252 1-103 (103)
17 cd03002 PDI_a_MPD1_like PDI fa 99.7 2.7E-17 5.8E-22 148.0 7.2 105 138-249 2-108 (109)
18 cd02994 PDI_a_TMX PDIa family, 99.7 4.5E-17 9.7E-22 144.8 7.0 98 137-250 2-100 (101)
19 PRK14288 chaperone protein Dna 99.7 4.5E-17 9.8E-22 177.7 6.4 69 36-104 2-73 (369)
20 cd02993 PDI_a_APS_reductase PD 99.7 5.8E-17 1.3E-21 146.6 5.8 102 137-249 2-109 (109)
21 cd03001 PDI_a_P5 PDIa family, 99.7 1.1E-16 2.3E-21 142.3 7.1 100 138-249 2-102 (103)
22 cd03065 PDI_b_Calsequestrin_N 99.7 1.6E-16 3.5E-21 145.9 8.1 102 137-252 10-118 (120)
23 PRK14296 chaperone protein Dna 99.7 9.8E-17 2.1E-21 175.1 6.6 69 36-104 3-73 (372)
24 KOG0190 Protein disulfide isom 99.6 1.6E-16 3.5E-21 175.0 7.0 104 136-252 366-472 (493)
25 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 3E-16 6.5E-21 139.4 7.3 100 138-249 2-104 (104)
26 cd03005 PDI_a_ERp46 PDIa famil 99.6 2.3E-16 5E-21 139.9 5.4 98 138-249 2-102 (102)
27 KOG1731 FAD-dependent sulfhydr 99.6 6.9E-16 1.5E-20 169.1 10.1 223 137-373 40-285 (606)
28 cd02963 TRX_DnaJ TRX domain, D 99.6 3E-16 6.4E-21 142.6 5.7 100 139-251 7-110 (111)
29 PTZ00443 Thioredoxin domain-co 99.6 2.6E-16 5.7E-21 159.6 5.8 104 136-252 30-138 (224)
30 PTZ00037 DnaJ_C chaperone prot 99.6 3.3E-16 7.1E-21 172.8 6.1 68 36-104 27-94 (421)
31 PRK14279 chaperone protein Dna 99.6 4.5E-16 9.8E-21 171.0 5.8 67 36-102 8-77 (392)
32 PRK14286 chaperone protein Dna 99.6 5.8E-16 1.2E-20 169.2 6.2 68 37-104 4-74 (372)
33 PRK14287 chaperone protein Dna 99.6 7.6E-16 1.6E-20 168.2 6.4 69 36-104 3-73 (371)
34 PRK14298 chaperone protein Dna 99.6 1.2E-15 2.7E-20 166.8 6.3 69 36-104 4-74 (377)
35 PRK14276 chaperone protein Dna 99.6 1.4E-15 3E-20 166.8 6.6 68 37-104 4-73 (380)
36 KOG0721 Molecular chaperone (D 99.6 4.7E-15 1E-19 144.8 9.3 95 9-103 69-168 (230)
37 TIGR01126 pdi_dom protein disu 99.6 2.8E-15 6.1E-20 132.5 7.1 99 141-252 1-101 (102)
38 PRK14282 chaperone protein Dna 99.6 1.7E-15 3.6E-20 165.6 6.9 69 36-104 3-75 (369)
39 cd02999 PDI_a_ERp44_like PDIa 99.6 1.6E-15 3.4E-20 135.3 5.4 84 151-249 16-100 (100)
40 PRK14283 chaperone protein Dna 99.6 1.5E-15 3.3E-20 166.5 6.4 69 36-104 4-74 (378)
41 cd02998 PDI_a_ERp38 PDIa famil 99.6 3.7E-15 8.1E-20 132.4 7.3 101 138-249 2-105 (105)
42 PRK14285 chaperone protein Dna 99.6 1.8E-15 3.8E-20 165.0 6.3 68 37-104 3-73 (365)
43 cd02956 ybbN ybbN protein fami 99.6 2.9E-15 6.4E-20 131.7 6.5 93 144-249 1-95 (96)
44 cd02997 PDI_a_PDIR PDIa family 99.6 2.5E-15 5.5E-20 133.6 6.1 101 138-249 2-104 (104)
45 PRK14278 chaperone protein Dna 99.6 2.3E-15 4.9E-20 164.9 6.8 66 37-102 3-70 (378)
46 PRK14299 chaperone protein Dna 99.6 2.2E-15 4.8E-20 159.5 6.5 67 37-103 4-72 (291)
47 PRK14280 chaperone protein Dna 99.6 2.5E-15 5.4E-20 164.5 6.5 68 37-104 4-73 (376)
48 PRK14291 chaperone protein Dna 99.6 2.7E-15 5.9E-20 164.6 6.7 69 36-104 2-72 (382)
49 PRK14277 chaperone protein Dna 99.6 2.6E-15 5.7E-20 164.9 6.4 68 37-104 5-75 (386)
50 PRK14294 chaperone protein Dna 99.6 2.7E-15 5.8E-20 163.8 6.3 69 36-104 3-74 (366)
51 KOG0910 Thioredoxin-like prote 99.6 2.7E-15 5.8E-20 140.2 5.3 103 137-252 44-147 (150)
52 KOG0716 Molecular chaperone (D 99.6 2.6E-15 5.6E-20 151.3 5.4 70 36-105 30-102 (279)
53 KOG0717 Molecular chaperone (D 99.6 9.3E-16 2E-20 163.6 2.2 68 36-103 7-78 (508)
54 PRK14297 chaperone protein Dna 99.6 3.2E-15 6.9E-20 164.0 6.1 68 37-104 4-74 (380)
55 PRK14301 chaperone protein Dna 99.5 3.3E-15 7.2E-20 163.3 6.1 69 36-104 3-74 (373)
56 PF00226 DnaJ: DnaJ domain; I 99.5 3.9E-15 8.4E-20 121.6 4.9 60 38-97 1-64 (64)
57 PRK14284 chaperone protein Dna 99.5 3.7E-15 8E-20 164.0 6.3 68 37-104 1-71 (391)
58 TIGR00424 APS_reduc 5'-adenyly 99.5 4.2E-15 9E-20 164.9 6.5 104 137-251 352-461 (463)
59 cd02992 PDI_a_QSOX PDIa family 99.5 9.5E-15 2.1E-19 133.4 7.4 102 138-246 3-109 (114)
60 PRK14295 chaperone protein Dna 99.5 5.6E-15 1.2E-19 162.3 6.3 69 36-104 8-83 (389)
61 PRK14281 chaperone protein Dna 99.5 5.9E-15 1.3E-19 162.6 6.3 68 37-104 3-73 (397)
62 PRK09381 trxA thioredoxin; Pro 99.5 1.4E-14 3E-19 130.6 7.4 103 137-252 4-107 (109)
63 PRK10767 chaperone protein Dna 99.5 8.6E-15 1.9E-19 160.3 6.4 69 36-104 3-74 (371)
64 COG3118 Thioredoxin domain-con 99.5 1E-14 2.2E-19 149.9 6.4 103 137-252 24-129 (304)
65 cd02961 PDI_a_family Protein D 99.5 8.5E-15 1.8E-19 128.1 4.9 98 140-249 2-101 (101)
66 cd03000 PDI_a_TMX3 PDIa family 99.5 2.7E-14 5.8E-19 127.9 7.9 94 144-252 7-103 (104)
67 PLN02309 5'-adenylylsulfate re 99.5 1.1E-14 2.3E-19 161.5 6.3 104 137-252 346-456 (457)
68 KOG0718 Molecular chaperone (D 99.5 1E-14 2.2E-19 155.7 5.0 69 37-105 9-83 (546)
69 TIGR02187 GlrX_arch Glutaredox 99.5 4E-13 8.7E-18 136.4 16.3 188 153-362 19-214 (215)
70 PRK14300 chaperone protein Dna 99.5 1.5E-14 3.2E-19 158.2 6.3 68 37-104 3-72 (372)
71 PTZ00341 Ring-infected erythro 99.5 1.6E-14 3.4E-19 166.6 6.4 70 36-105 572-643 (1136)
72 PRK14290 chaperone protein Dna 99.5 1.9E-14 4.1E-19 157.2 6.7 68 37-104 3-74 (365)
73 TIGR02349 DnaJ_bact chaperone 99.5 2E-14 4.3E-19 156.6 6.3 67 38-104 1-69 (354)
74 KOG0715 Molecular chaperone (D 99.5 2E-14 4.3E-19 151.2 6.1 68 36-103 42-111 (288)
75 PRK14293 chaperone protein Dna 99.5 2.6E-14 5.7E-19 156.5 6.7 68 37-104 3-72 (374)
76 PRK14292 chaperone protein Dna 99.5 2.5E-14 5.4E-19 156.7 6.4 67 37-103 2-70 (371)
77 KOG0691 Molecular chaperone (D 99.5 2.4E-14 5.1E-19 149.5 5.5 68 36-103 4-74 (296)
78 PRK14289 chaperone protein Dna 99.5 2.7E-14 5.8E-19 157.1 6.2 69 36-104 4-75 (386)
79 PHA02278 thioredoxin-like prot 99.5 2.6E-14 5.5E-19 128.1 4.4 96 143-248 4-100 (103)
80 PRK10266 curved DNA-binding pr 99.5 4.2E-14 9.1E-19 150.9 6.0 66 37-102 4-71 (306)
81 KOG0719 Molecular chaperone (D 99.5 4.6E-14 9.9E-19 138.9 5.1 68 36-103 13-85 (264)
82 KOG0722 Molecular chaperone (D 99.5 7.2E-14 1.6E-18 138.7 6.5 92 11-102 7-100 (329)
83 PRK10996 thioredoxin 2; Provis 99.5 6.3E-14 1.4E-18 132.6 5.4 103 137-252 36-138 (139)
84 cd02985 TRX_CDSP32 TRX family, 99.4 8.4E-14 1.8E-18 124.7 5.3 96 143-250 3-100 (103)
85 KOG0624 dsRNA-activated protei 99.4 1.8E-13 3.9E-18 141.8 7.2 65 36-100 393-463 (504)
86 PF13848 Thioredoxin_6: Thiore 99.4 1.5E-11 3.3E-16 120.5 20.3 151 294-500 10-162 (184)
87 cd02962 TMX2 TMX2 family; comp 99.4 1.1E-13 2.3E-18 132.5 4.6 89 137-228 29-120 (152)
88 TIGR01068 thioredoxin thioredo 99.4 2.8E-13 6.1E-18 119.1 6.1 99 141-252 1-100 (101)
89 smart00271 DnaJ DnaJ molecular 99.4 3.4E-13 7.4E-18 108.4 5.7 55 37-91 1-59 (60)
90 cd06257 DnaJ DnaJ domain or J- 99.4 4.1E-13 9E-18 105.9 5.8 52 38-89 1-55 (55)
91 PTZ00102 disulphide isomerase; 99.4 3.8E-13 8.2E-18 152.1 7.5 105 136-252 357-464 (477)
92 PHA03102 Small T antigen; Revi 99.4 2.9E-13 6.3E-18 128.4 5.4 67 37-104 5-73 (153)
93 cd02948 TRX_NDPK TRX domain, T 99.4 3.4E-13 7.4E-18 120.5 4.9 96 141-251 5-101 (102)
94 cd02954 DIM1 Dim1 family; Dim1 99.4 1.4E-13 3.1E-18 124.8 2.1 76 144-228 3-80 (114)
95 cd02965 HyaE HyaE family; HyaE 99.4 6.2E-13 1.4E-17 119.9 6.1 96 138-246 12-109 (111)
96 KOG0191 Thioredoxin/protein di 99.4 8.8E-13 1.9E-17 145.3 8.5 105 137-253 145-252 (383)
97 cd02957 Phd_like Phosducin (Ph 99.4 4.3E-13 9.3E-18 122.2 4.1 83 135-228 3-88 (113)
98 cd02953 DsbDgamma DsbD gamma f 99.3 1.1E-12 2.3E-17 117.4 5.8 96 144-249 2-103 (104)
99 TIGR03835 termin_org_DnaJ term 99.3 1.5E-12 3.3E-17 147.5 6.6 67 37-103 2-70 (871)
100 cd02989 Phd_like_TxnDC9 Phosdu 99.3 3.8E-12 8.1E-17 116.1 6.4 82 137-228 5-87 (113)
101 TIGR01130 ER_PDI_fam protein d 99.3 4.2E-12 9.2E-17 142.4 7.2 104 136-252 346-453 (462)
102 cd02950 TxlA TRX-like protein 99.3 6.7E-12 1.5E-16 119.2 7.5 103 143-256 10-113 (142)
103 cd02947 TRX_family TRX family; 99.3 9.9E-12 2.1E-16 106.3 6.5 92 144-249 1-92 (93)
104 COG2214 CbpA DnaJ-class molecu 99.2 8.2E-12 1.8E-16 125.5 6.2 65 36-100 5-73 (237)
105 cd02984 TRX_PICOT TRX domain, 99.2 5.2E-12 1.1E-16 111.0 4.1 93 143-249 2-96 (97)
106 PTZ00051 thioredoxin; Provisio 99.2 9.2E-12 2E-16 109.7 4.5 92 139-245 3-95 (98)
107 cd02949 TRX_NTR TRX domain, no 99.2 2.3E-11 4.9E-16 107.6 6.2 86 151-249 11-96 (97)
108 PLN00410 U5 snRNP protein, DIM 99.2 2.5E-11 5.5E-16 114.3 4.7 97 143-251 11-118 (142)
109 KOG0907 Thioredoxin [Posttrans 99.1 7E-11 1.5E-15 106.3 6.4 84 152-250 20-103 (106)
110 cd02975 PfPDO_like_N Pyrococcu 99.1 6.8E-11 1.5E-15 107.8 6.1 95 146-252 15-109 (113)
111 COG5407 SEC63 Preprotein trans 99.1 7.6E-11 1.6E-15 125.6 6.9 93 11-103 69-172 (610)
112 PRK01356 hscB co-chaperone Hsc 99.1 7.7E-11 1.7E-15 114.4 6.5 62 37-98 2-71 (166)
113 cd02982 PDI_b'_family Protein 99.1 1.4E-10 3.1E-15 103.0 6.6 88 152-252 11-102 (103)
114 cd02987 Phd_like_Phd Phosducin 99.1 6.8E-11 1.5E-15 116.2 5.0 81 137-228 63-147 (175)
115 TIGR01295 PedC_BrcD bacterioci 99.1 1.1E-10 2.4E-15 108.0 6.0 104 138-249 8-120 (122)
116 PRK05014 hscB co-chaperone Hsc 99.1 1.1E-10 2.5E-15 113.9 6.2 62 37-98 1-72 (171)
117 PRK03578 hscB co-chaperone Hsc 99.0 3.6E-10 7.7E-15 110.7 6.9 64 35-98 4-77 (176)
118 KOG0720 Molecular chaperone (D 99.0 2E-10 4.3E-15 123.5 5.3 65 36-100 234-300 (490)
119 PTZ00100 DnaJ chaperone protei 99.0 2.7E-10 5.8E-15 102.9 5.0 52 36-88 64-115 (116)
120 cd02986 DLP Dim1 family, Dim1- 99.0 1.6E-10 3.4E-15 104.4 3.1 76 144-228 3-80 (114)
121 PRK00294 hscB co-chaperone Hsc 99.0 4.9E-10 1.1E-14 109.3 6.8 63 36-98 3-75 (173)
122 TIGR00411 redox_disulf_1 small 99.0 1.4E-09 3.1E-14 92.3 8.1 80 156-252 2-81 (82)
123 cd02988 Phd_like_VIAF Phosduci 99.0 4.1E-10 8.9E-15 112.2 5.2 97 137-250 83-189 (192)
124 KOG0714 Molecular chaperone (D 99.0 3.4E-10 7.3E-15 119.1 4.3 69 36-104 2-74 (306)
125 cd02951 SoxW SoxW family; SoxW 98.9 7.9E-10 1.7E-14 102.2 5.3 96 148-252 8-118 (125)
126 cd02983 P5_C P5 family, C-term 98.9 1.5E-08 3.1E-13 94.9 12.9 118 366-559 2-125 (130)
127 PHA02624 large T antigen; Prov 98.9 1.7E-09 3.6E-14 122.1 5.5 60 36-96 10-71 (647)
128 KOG0550 Molecular chaperone (D 98.9 1.3E-09 2.9E-14 116.0 4.0 66 36-101 372-441 (486)
129 KOG0908 Thioredoxin-like prote 98.8 3.7E-09 8E-14 105.8 6.1 100 138-252 3-105 (288)
130 PRK09430 djlA Dna-J like membr 98.8 2E-09 4.3E-14 112.6 4.4 53 37-89 200-262 (267)
131 PTZ00062 glutaredoxin; Provisi 98.8 2.4E-08 5.2E-13 100.2 11.0 88 143-253 6-94 (204)
132 cd02952 TRP14_like Human TRX-r 98.8 2.4E-09 5.1E-14 98.3 3.0 80 143-228 9-102 (119)
133 PF13848 Thioredoxin_6: Thiore 98.7 3.4E-07 7.4E-12 89.7 16.1 168 171-361 8-183 (184)
134 TIGR02187 GlrX_arch Glutaredox 98.6 6.7E-08 1.5E-12 98.2 8.2 81 154-251 134-214 (215)
135 KOG0913 Thiol-disulfide isomer 98.6 1.1E-08 2.3E-13 101.9 2.1 101 136-252 24-125 (248)
136 PHA02125 thioredoxin-like prot 98.6 3.9E-08 8.5E-13 82.8 5.0 69 157-247 2-71 (75)
137 cd02959 ERp19 Endoplasmic reti 98.6 3.1E-08 6.7E-13 91.0 4.2 90 151-249 17-109 (117)
138 TIGR00412 redox_disulf_2 small 98.6 5.9E-08 1.3E-12 82.1 4.9 73 157-249 2-75 (76)
139 PRK00293 dipZ thiol:disulfide 98.6 5.5E-08 1.2E-12 112.4 6.3 101 143-252 460-569 (571)
140 KOG1150 Predicted molecular ch 98.6 6.9E-08 1.5E-12 93.4 5.5 63 34-96 50-116 (250)
141 PF13098 Thioredoxin_2: Thiore 98.5 7.9E-08 1.7E-12 86.7 4.5 89 151-249 3-112 (112)
142 PRK01773 hscB co-chaperone Hsc 98.5 1.5E-07 3.3E-12 92.0 6.3 61 37-97 2-72 (173)
143 PRK03147 thiol-disulfide oxido 98.4 5.6E-07 1.2E-11 87.6 7.8 92 152-252 60-171 (173)
144 TIGR00714 hscB Fe-S protein as 98.4 4.8E-07 1E-11 87.3 6.0 51 49-99 3-61 (157)
145 TIGR02740 TraF-like TraF-like 98.3 8.7E-07 1.9E-11 93.1 7.5 90 152-252 165-263 (271)
146 KOG0914 Thioredoxin-like prote 98.3 3.3E-07 7.1E-12 90.2 3.7 84 142-228 131-217 (265)
147 cd02973 TRX_GRX_like Thioredox 98.3 7.9E-07 1.7E-11 72.7 5.3 57 156-222 2-58 (67)
148 cd02955 SSP411 TRX domain, SSP 98.3 5.5E-07 1.2E-11 83.5 4.0 79 146-227 8-91 (124)
149 COG5269 ZUO1 Ribosome-associat 98.2 8.4E-07 1.8E-11 89.6 4.5 66 36-101 42-115 (379)
150 cd02967 mauD Methylamine utili 98.2 2.7E-06 5.8E-11 76.9 7.4 56 152-207 20-75 (114)
151 cd03011 TlpA_like_ScsD_MtbDsbE 98.2 2.2E-06 4.7E-11 78.5 6.6 96 141-247 8-120 (123)
152 TIGR02738 TrbB type-F conjugat 98.2 3.8E-06 8.2E-11 80.8 7.6 94 151-252 48-152 (153)
153 cd03009 TryX_like_TryX_NRX Try 98.2 2.9E-06 6.4E-11 78.9 6.4 70 152-227 17-110 (131)
154 PRK14018 trifunctional thiored 98.1 5.2E-06 1.1E-10 94.1 8.3 91 151-251 54-171 (521)
155 cd02966 TlpA_like_family TlpA- 98.1 3.6E-06 7.8E-11 74.6 5.3 69 152-226 18-107 (116)
156 cd02964 TryX_like_family Trypa 98.1 5E-06 1.1E-10 77.6 6.3 76 152-227 16-110 (132)
157 cd03010 TlpA_like_DsbE TlpA-li 98.1 4E-06 8.6E-11 77.5 5.1 82 152-245 24-126 (127)
158 cd03026 AhpF_NTD_C TRX-GRX-lik 98.1 9.3E-06 2E-10 70.9 6.8 77 152-246 11-87 (89)
159 PRK11509 hydrogenase-1 operon 98.0 1.5E-05 3.3E-10 74.3 7.3 100 140-252 21-123 (132)
160 KOG1789 Endocytosis protein RM 98.0 6.4E-06 1.4E-10 95.7 5.0 54 36-89 1280-1337(2235)
161 TIGR00385 dsbE periplasmic pro 97.9 1.6E-05 3.6E-10 77.9 5.9 95 151-252 61-170 (173)
162 cd02958 UAS UAS family; UAS is 97.9 2.3E-05 5E-10 71.3 6.2 98 145-252 5-110 (114)
163 cd03007 PDI_a_ERp29_N PDIa fam 97.9 0.00011 2.4E-09 67.1 10.4 98 262-363 6-115 (116)
164 KOG0568 Molecular chaperone (D 97.9 1.8E-05 4E-10 78.3 5.3 53 37-89 47-102 (342)
165 PRK15412 thiol:disulfide inter 97.8 3.4E-05 7.4E-10 76.5 7.2 94 152-252 67-175 (185)
166 cd03008 TryX_like_RdCVF Trypar 97.8 2.5E-05 5.4E-10 74.5 5.4 76 152-227 24-123 (146)
167 PF13905 Thioredoxin_8: Thiore 97.8 2.9E-05 6.2E-10 67.8 4.8 74 153-226 1-92 (95)
168 cd03065 PDI_b_Calsequestrin_N 97.8 0.00024 5.2E-09 65.5 10.6 94 262-362 14-117 (120)
169 PRK13728 conjugal transfer pro 97.7 5.9E-05 1.3E-09 74.3 6.7 88 157-252 73-170 (181)
170 PF00085 Thioredoxin: Thioredo 97.7 8.5E-05 1.8E-09 65.2 7.0 96 262-363 4-103 (103)
171 PF13899 Thioredoxin_7: Thiore 97.7 3.4E-05 7.3E-10 66.0 3.8 64 151-224 15-81 (82)
172 cd01659 TRX_superfamily Thiore 97.7 6.4E-05 1.4E-09 58.2 5.0 63 157-226 1-63 (69)
173 PLN02919 haloacid dehalogenase 97.7 7.9E-05 1.7E-09 92.2 7.8 98 152-253 419-536 (1057)
174 COG4232 Thiol:disulfide interc 97.6 6.8E-05 1.5E-09 84.6 6.2 99 145-252 464-567 (569)
175 cd03004 PDI_a_ERdj5_C PDIa fam 97.6 0.00026 5.7E-09 62.8 8.5 80 279-360 20-104 (104)
176 cd03002 PDI_a_MPD1_like PDI fa 97.5 0.00041 8.9E-09 61.9 8.6 92 268-361 10-109 (109)
177 cd03012 TlpA_like_DipZ_like Tl 97.5 0.00023 4.9E-09 65.8 7.0 74 152-225 22-114 (126)
178 cd02981 PDI_b_family Protein D 97.5 0.00059 1.3E-08 59.8 9.1 91 264-363 6-97 (97)
179 PLN02399 phospholipid hydroper 97.5 0.00052 1.1E-08 70.6 9.7 98 152-252 98-233 (236)
180 cd03003 PDI_a_ERdj5_N PDIa fam 97.5 0.00057 1.2E-08 60.5 8.7 78 279-359 19-100 (101)
181 cd03006 PDI_a_EFP1_N PDIa fami 97.5 0.00046 1E-08 63.0 8.2 81 277-360 28-113 (113)
182 smart00594 UAS UAS domain. 97.5 0.00031 6.7E-09 64.9 7.1 92 151-249 25-121 (122)
183 TIGR02196 GlrX_YruB Glutaredox 97.4 0.0003 6.5E-09 57.6 5.9 71 157-249 2-73 (74)
184 TIGR02661 MauD methylamine deh 97.4 0.00058 1.3E-08 68.0 8.7 92 152-250 73-176 (189)
185 cd03066 PDI_b_Calsequestrin_mi 97.4 0.0012 2.6E-08 58.9 9.9 95 262-364 5-101 (102)
186 cd02996 PDI_a_ERp44 PDIa famil 97.4 0.00093 2E-08 59.9 8.7 93 262-360 6-108 (108)
187 cd03069 PDI_b_ERp57 PDIb famil 97.3 0.0015 3.2E-08 58.7 9.3 93 262-363 5-103 (104)
188 cd03001 PDI_a_P5 PDIa family, 97.3 0.0014 3E-08 57.7 8.8 67 292-360 36-102 (103)
189 KOG0723 Molecular chaperone (D 97.2 0.00051 1.1E-08 60.5 5.4 49 41-90 60-108 (112)
190 cd02993 PDI_a_APS_reductase PD 97.2 0.0012 2.5E-08 59.6 7.8 92 268-360 11-109 (109)
191 COG0526 TrxA Thiol-disulfide i 97.2 0.00052 1.1E-08 59.9 4.8 68 153-227 32-100 (127)
192 PTZ00056 glutathione peroxidas 97.2 0.002 4.2E-08 64.8 9.4 57 152-208 38-103 (199)
193 cd00340 GSH_Peroxidase Glutath 97.2 0.001 2.2E-08 63.6 7.1 42 152-194 21-63 (152)
194 PLN02412 probable glutathione 97.1 0.0022 4.8E-08 62.5 9.3 43 152-194 28-71 (167)
195 cd02960 AGR Anterior Gradient 97.1 0.00033 7.1E-09 65.4 3.2 73 145-227 11-90 (130)
196 TIGR02540 gpx7 putative glutat 97.1 0.0021 4.6E-08 61.5 8.7 42 152-193 21-63 (153)
197 TIGR00424 APS_reduc 5'-adenyly 97.1 0.0022 4.8E-08 72.1 9.6 100 262-362 356-461 (463)
198 cd02981 PDI_b_family Protein D 97.1 0.0014 3.1E-08 57.3 6.5 87 146-251 10-96 (97)
199 PRK11509 hydrogenase-1 operon 97.0 0.0061 1.3E-07 57.0 10.6 96 268-369 27-129 (132)
200 PF07912 ERp29_N: ERp29, N-ter 97.0 0.0015 3.2E-08 59.6 6.2 106 138-252 6-118 (126)
201 TIGR01126 pdi_dom protein disu 97.0 0.0046 1E-07 54.0 9.4 83 278-363 13-101 (102)
202 TIGR03143 AhpF_homolog putativ 97.0 0.015 3.3E-07 67.5 15.8 184 152-360 365-554 (555)
203 PF13192 Thioredoxin_3: Thiore 96.9 0.0013 2.8E-08 55.5 4.7 73 158-250 3-76 (76)
204 TIGR02200 GlrX_actino Glutared 96.9 0.00092 2E-08 55.6 3.5 58 157-227 2-61 (77)
205 cd02965 HyaE HyaE family; HyaE 96.9 0.0089 1.9E-07 54.3 10.0 83 268-356 20-108 (111)
206 PF08534 Redoxin: Redoxin; In 96.8 0.0018 3.9E-08 61.1 5.4 76 152-227 27-125 (146)
207 cd02999 PDI_a_ERp44_like PDIa 96.8 0.0032 6.9E-08 56.0 6.5 79 278-360 18-100 (100)
208 COG3118 Thioredoxin domain-con 96.8 0.0035 7.6E-08 65.6 7.7 97 262-363 28-129 (304)
209 cd02956 ybbN ybbN protein fami 96.8 0.0069 1.5E-07 52.7 8.5 81 278-361 12-96 (96)
210 cd02995 PDI_a_PDI_a'_C PDIa fa 96.7 0.0064 1.4E-07 53.4 7.8 66 292-360 36-104 (104)
211 cd03073 PDI_b'_ERp72_ERp57 PDI 96.7 0.014 3E-07 53.1 10.2 91 396-548 16-111 (111)
212 cd02969 PRX_like1 Peroxiredoxi 96.7 0.0067 1.5E-07 59.1 8.7 96 152-252 24-151 (171)
213 cd02998 PDI_a_ERp38 PDIa famil 96.7 0.0074 1.6E-07 53.0 7.8 81 278-360 18-105 (105)
214 PF02114 Phosducin: Phosducin; 96.7 0.0015 3.2E-08 68.5 3.7 104 137-252 126-237 (265)
215 PLN02309 5'-adenylylsulfate re 96.6 0.0069 1.5E-07 68.2 9.1 99 262-362 350-455 (457)
216 cd02961 PDI_a_family Protein D 96.6 0.0075 1.6E-07 51.9 7.4 67 292-360 33-101 (101)
217 KOG4277 Uncharacterized conser 96.6 0.016 3.4E-07 60.3 10.4 107 268-376 34-144 (468)
218 KOG0910 Thioredoxin-like prote 96.6 0.0072 1.6E-07 57.3 7.4 80 280-362 64-146 (150)
219 cd02963 TRX_DnaJ TRX domain, D 96.5 0.014 3E-07 52.8 8.4 82 278-362 24-110 (111)
220 cd02953 DsbDgamma DsbD gamma f 96.5 0.01 2.2E-07 52.6 7.4 62 299-360 39-103 (104)
221 PF13728 TraF: F plasmid trans 96.4 0.002 4.4E-08 65.5 3.2 86 152-247 119-212 (215)
222 cd03005 PDI_a_ERp46 PDIa famil 96.4 0.011 2.5E-07 51.7 7.6 66 292-360 34-102 (102)
223 TIGR01068 thioredoxin thioredo 96.4 0.018 3.9E-07 50.0 8.7 68 293-363 33-100 (101)
224 cd02982 PDI_b'_family Protein 96.4 0.01 2.3E-07 52.2 7.2 82 279-362 13-101 (103)
225 cd03067 PDI_b_PDIR_N PDIb fami 96.4 0.0035 7.5E-08 55.1 3.8 98 142-251 8-110 (112)
226 cd02997 PDI_a_PDIR PDIa family 96.4 0.015 3.2E-07 51.1 8.1 67 293-360 36-104 (104)
227 cd03068 PDI_b_ERp72 PDIb famil 96.4 0.023 5E-07 51.3 9.3 95 262-363 5-107 (107)
228 cd02950 TxlA TRX-like protein 96.3 0.018 3.8E-07 54.7 8.4 86 277-362 19-108 (142)
229 cd02994 PDI_a_TMX PDIa family, 96.3 0.019 4.2E-07 50.4 8.2 78 280-361 19-100 (101)
230 TIGR02180 GRX_euk Glutaredoxin 96.3 0.0031 6.7E-08 53.4 2.9 57 157-221 1-59 (84)
231 PRK09381 trxA thioredoxin; Pro 96.3 0.021 4.6E-07 51.0 8.5 83 278-363 21-107 (109)
232 cd03072 PDI_b'_ERp44 PDIb' fam 96.1 0.014 3E-07 53.1 6.6 102 138-252 1-107 (111)
233 PF00578 AhpC-TSA: AhpC/TSA fa 96.1 0.0061 1.3E-07 55.4 4.1 55 152-206 24-80 (124)
234 PRK10996 thioredoxin 2; Provis 96.1 0.024 5.2E-07 53.5 8.1 82 278-362 52-137 (139)
235 cd03072 PDI_b'_ERp44 PDIb' fam 96.0 0.056 1.2E-06 49.1 9.8 91 397-549 19-109 (111)
236 cd02983 P5_C P5 family, C-term 95.9 0.035 7.6E-07 52.0 8.5 84 278-363 20-114 (130)
237 cd03017 PRX_BCP Peroxiredoxin 95.9 0.019 4E-07 53.5 6.6 55 153-207 23-79 (140)
238 KOG2603 Oligosaccharyltransfer 95.9 0.035 7.6E-07 58.4 9.0 108 136-252 40-165 (331)
239 PHA02278 thioredoxin-like prot 95.9 0.032 7E-07 50.0 7.7 81 278-359 14-100 (103)
240 PTZ00443 Thioredoxin domain-co 95.9 0.028 6E-07 57.6 8.0 68 292-363 70-138 (224)
241 cd02991 UAS_ETEA UAS family, E 95.8 0.013 2.7E-07 53.8 4.7 94 151-252 15-112 (116)
242 TIGR02739 TraF type-F conjugat 95.7 0.02 4.3E-07 59.7 6.2 91 152-252 149-247 (256)
243 cd03000 PDI_a_TMX3 PDIa family 95.7 0.056 1.2E-06 48.0 8.3 67 292-362 33-102 (104)
244 cd02989 Phd_like_TxnDC9 Phosdu 95.6 0.071 1.5E-06 48.5 8.8 66 292-360 40-112 (113)
245 KOG3192 Mitochondrial J-type c 95.5 0.011 2.5E-07 55.8 3.4 65 36-100 7-83 (168)
246 PF06110 DUF953: Eukaryotic pr 95.5 0.0078 1.7E-07 55.4 2.2 76 151-226 17-99 (119)
247 PTZ00256 glutathione peroxidas 95.5 0.078 1.7E-06 52.5 9.5 42 153-194 40-83 (183)
248 TIGR01626 ytfJ_HI0045 conserve 95.5 0.036 7.7E-07 55.0 6.9 93 152-247 58-174 (184)
249 cd02949 TRX_NTR TRX domain, no 95.4 0.056 1.2E-06 47.4 7.4 82 277-361 12-97 (97)
250 PRK09437 bcp thioredoxin-depen 95.4 0.038 8.2E-07 52.7 6.8 56 152-207 29-86 (154)
251 PRK13703 conjugal pilus assemb 95.4 0.029 6.2E-07 58.2 6.1 93 152-252 142-240 (248)
252 KOG2501 Thioredoxin, nucleored 95.3 0.032 6.9E-07 53.5 5.8 70 152-227 32-126 (157)
253 cd03015 PRX_Typ2cys Peroxiredo 95.3 0.071 1.5E-06 52.1 8.4 43 153-195 29-73 (173)
254 cd02975 PfPDO_like_N Pyrococcu 95.3 0.14 3E-06 46.6 9.5 67 293-362 41-108 (113)
255 cd02948 TRX_NDPK TRX domain, T 95.2 0.096 2.1E-06 46.5 8.2 89 266-362 8-101 (102)
256 cd02954 DIM1 Dim1 family; Dim1 95.2 0.05 1.1E-06 49.7 6.4 62 278-341 14-79 (114)
257 PRK10606 btuE putative glutath 95.2 0.041 8.9E-07 54.6 6.2 42 152-194 24-66 (183)
258 KOG0912 Thiol-disulfide isomer 95.1 0.082 1.8E-06 55.4 8.4 116 292-424 31-153 (375)
259 PRK00522 tpx lipid hydroperoxi 95.1 0.038 8.3E-07 53.8 5.7 55 152-207 43-98 (167)
260 cd02985 TRX_CDSP32 TRX family, 95.0 0.15 3.2E-06 45.4 8.9 90 268-361 6-100 (103)
261 cd02987 Phd_like_Phd Phosducin 95.0 0.1 2.2E-06 51.4 8.6 80 279-362 84-173 (175)
262 cd02970 PRX_like2 Peroxiredoxi 95.0 0.044 9.6E-07 51.4 5.6 55 153-207 23-79 (149)
263 TIGR03143 AhpF_homolog putativ 94.9 0.053 1.2E-06 63.1 7.1 79 153-249 475-554 (555)
264 KOG0907 Thioredoxin [Posttrans 94.8 0.15 3.3E-06 46.0 8.4 80 278-362 21-104 (106)
265 KOG3425 Uncharacterized conser 94.8 0.018 4E-07 52.2 2.4 80 144-225 13-104 (128)
266 cd02957 Phd_like Phosducin (Ph 94.8 0.088 1.9E-06 47.6 6.9 59 279-341 25-87 (113)
267 TIGR03137 AhpC peroxiredoxin. 94.7 0.084 1.8E-06 52.4 7.2 43 152-194 30-74 (187)
268 PRK11200 grxA glutaredoxin 1; 94.7 0.039 8.4E-07 47.3 4.1 80 156-252 2-82 (85)
269 PF07912 ERp29_N: ERp29, N-ter 94.6 0.16 3.4E-06 46.7 7.9 62 304-365 52-120 (126)
270 cd03014 PRX_Atyp2cys Peroxired 94.6 0.063 1.4E-06 50.4 5.7 55 152-207 25-80 (143)
271 cd02984 TRX_PICOT TRX domain, 94.6 0.16 3.5E-06 43.9 7.8 88 268-360 5-96 (97)
272 PRK15317 alkyl hydroperoxide r 94.5 0.085 1.9E-06 60.8 7.6 83 152-252 115-197 (517)
273 cd02986 DLP Dim1 family, Dim1- 94.4 0.2 4.3E-06 45.7 8.1 69 277-347 13-85 (114)
274 cd02947 TRX_family TRX family; 94.3 0.21 4.5E-06 41.8 7.8 78 279-360 11-92 (93)
275 cd02968 SCO SCO (an acronym fo 94.3 0.064 1.4E-06 50.0 4.9 43 152-194 21-68 (142)
276 cd03018 PRX_AhpE_like Peroxire 94.2 0.077 1.7E-06 50.0 5.4 54 154-207 29-84 (149)
277 cd02976 NrdH NrdH-redoxin (Nrd 94.0 0.082 1.8E-06 42.8 4.4 54 157-222 2-56 (73)
278 cd02971 PRX_family Peroxiredox 93.9 0.12 2.7E-06 47.9 6.0 55 152-206 21-77 (140)
279 PRK10382 alkyl hydroperoxide r 93.7 0.32 6.9E-06 48.5 8.8 97 152-252 30-155 (187)
280 PLN00410 U5 snRNP protein, DIM 93.6 0.39 8.5E-06 45.6 8.7 91 268-362 14-118 (142)
281 cd02951 SoxW SoxW family; SoxW 93.6 0.21 4.6E-06 45.7 6.9 43 320-362 74-117 (125)
282 cd03020 DsbA_DsbC_DsbG DsbA fa 93.4 0.12 2.6E-06 51.6 5.2 26 152-177 76-101 (197)
283 KOG0911 Glutaredoxin-related p 93.4 0.58 1.3E-05 47.3 9.9 68 151-228 15-82 (227)
284 cd02066 GRX_family Glutaredoxi 93.1 0.1 2.2E-06 41.9 3.5 53 157-221 2-55 (72)
285 cd03073 PDI_b'_ERp72_ERp57 PDI 93.0 0.21 4.6E-06 45.4 5.8 100 140-252 3-110 (111)
286 KOG1672 ATP binding protein [P 93.0 0.06 1.3E-06 53.0 2.3 76 143-228 74-149 (211)
287 PRK10877 protein disulfide iso 92.9 0.3 6.5E-06 50.3 7.4 88 151-252 105-230 (232)
288 cd03419 GRX_GRXh_1_2_like Glut 92.8 0.088 1.9E-06 44.2 2.9 58 157-226 2-61 (82)
289 COG1076 DjlA DnaJ-domain-conta 92.7 0.058 1.3E-06 53.1 1.8 51 37-87 113-173 (174)
290 cd02972 DsbA_family DsbA famil 92.5 0.17 3.6E-06 43.1 4.3 30 157-186 1-30 (98)
291 PF00462 Glutaredoxin: Glutare 92.2 0.16 3.6E-06 40.2 3.5 54 157-222 1-55 (60)
292 cd03074 PDI_b'_Calsequestrin_C 92.1 1.4 3.1E-05 39.5 9.4 97 397-548 22-120 (120)
293 PF07449 HyaE: Hydrogenase-1 e 92.0 0.14 3E-06 46.2 3.1 81 138-227 11-93 (107)
294 TIGR00411 redox_disulf_1 small 91.9 0.88 1.9E-05 37.9 7.9 63 293-362 18-80 (82)
295 cd02988 Phd_like_VIAF Phosduci 91.8 0.8 1.7E-05 45.8 8.7 79 278-362 102-190 (192)
296 PRK15000 peroxidase; Provision 91.8 0.76 1.6E-05 46.2 8.6 98 152-252 33-161 (200)
297 PF14595 Thioredoxin_9: Thiore 91.8 0.087 1.9E-06 49.2 1.7 67 153-226 41-107 (129)
298 KOG2640 Thioredoxin [Function 91.6 0.15 3.3E-06 53.7 3.4 87 152-252 75-161 (319)
299 cd02962 TMX2 TMX2 family; comp 91.5 0.45 9.7E-06 45.8 6.2 71 268-341 38-119 (152)
300 TIGR03140 AhpF alkyl hydropero 91.4 0.52 1.1E-05 54.4 7.9 83 152-252 116-198 (515)
301 COG2143 Thioredoxin-related pr 91.4 0.29 6.3E-06 46.7 4.7 88 149-245 38-141 (182)
302 PF03190 Thioredox_DsbH: Prote 91.2 0.34 7.4E-06 47.0 5.1 71 151-227 35-113 (163)
303 cd02992 PDI_a_QSOX PDIa family 91.0 0.61 1.3E-05 42.3 6.4 63 279-341 20-89 (114)
304 KOG0431 Auxilin-like protein a 90.7 0.43 9.3E-06 53.9 6.1 32 40-71 391-422 (453)
305 PRK13190 putative peroxiredoxi 90.6 0.98 2.1E-05 45.4 8.1 95 156-252 31-153 (202)
306 cd03023 DsbA_Com1_like DsbA fa 90.6 0.25 5.4E-06 46.3 3.6 31 152-182 4-34 (154)
307 cd03071 PDI_b'_NRX PDIb' famil 90.5 3.5 7.5E-05 37.0 10.2 96 397-548 16-115 (116)
308 PTZ00253 tryparedoxin peroxida 90.2 1.1 2.4E-05 44.9 8.0 43 153-195 36-80 (199)
309 PF01216 Calsequestrin: Calseq 90.1 1.9 4.2E-05 46.4 9.9 66 306-375 90-155 (383)
310 TIGR02183 GRXA Glutaredoxin, G 90.0 0.35 7.6E-06 41.6 3.7 79 157-252 2-81 (86)
311 PTZ00051 thioredoxin; Provisio 90.0 0.97 2.1E-05 39.1 6.6 81 268-356 11-95 (98)
312 TIGR02190 GlrX-dom Glutaredoxi 89.8 0.46 1E-05 40.1 4.2 57 154-222 7-63 (79)
313 TIGR01295 PedC_BrcD bacterioci 89.7 1.7 3.6E-05 40.1 8.2 80 278-360 23-120 (122)
314 PRK15317 alkyl hydroperoxide r 89.0 8.2 0.00018 44.5 15.1 173 154-362 19-196 (517)
315 PTZ00062 glutaredoxin; Provisi 88.9 6.9 0.00015 39.6 12.5 74 279-365 18-95 (204)
316 cd03019 DsbA_DsbA DsbA family, 88.8 0.45 9.9E-06 46.0 3.9 38 152-189 14-51 (178)
317 PF02114 Phosducin: Phosducin; 88.3 1.3 2.9E-05 46.6 7.2 68 294-365 166-239 (265)
318 cd03066 PDI_b_Calsequestrin_mi 88.1 1.8 3.8E-05 38.4 6.9 92 142-252 7-100 (102)
319 PRK10329 glutaredoxin-like pro 87.9 0.78 1.7E-05 39.1 4.3 74 157-252 3-76 (81)
320 COG1076 DjlA DnaJ-domain-conta 87.6 0.3 6.4E-06 48.1 1.7 61 38-98 2-72 (174)
321 PRK13599 putative peroxiredoxi 87.5 1.4 3.1E-05 44.8 6.7 96 155-252 31-155 (215)
322 KOG3414 Component of the U4/U6 87.5 0.87 1.9E-05 41.9 4.5 72 147-227 15-88 (142)
323 cd03016 PRX_1cys Peroxiredoxin 87.4 1.5 3.2E-05 44.1 6.7 41 155-195 28-69 (203)
324 TIGR03140 AhpF alkyl hydropero 87.3 16 0.00034 42.2 16.0 171 154-361 20-196 (515)
325 cd02952 TRP14_like Human TRX-r 86.9 3.2 6.9E-05 38.3 8.0 49 292-340 46-100 (119)
326 cd03069 PDI_b_ERp57 PDIb famil 86.3 1.8 3.9E-05 38.6 6.0 92 144-252 9-103 (104)
327 PF03656 Pam16: Pam16; InterP 86.2 1.2 2.7E-05 41.4 4.9 53 38-91 59-111 (127)
328 cd03067 PDI_b_PDIR_N PDIb fami 85.4 3.5 7.5E-05 36.7 6.9 83 277-361 19-109 (112)
329 cd02958 UAS UAS family; UAS is 84.8 8 0.00017 34.7 9.6 45 318-362 64-109 (114)
330 TIGR02194 GlrX_NrdH Glutaredox 84.5 1.2 2.6E-05 36.7 3.7 53 158-222 2-54 (72)
331 PF07449 HyaE: Hydrogenase-1 e 83.9 3.4 7.5E-05 37.3 6.5 69 268-341 19-93 (107)
332 PF11009 DUF2847: Protein of u 83.5 0.63 1.4E-05 41.9 1.6 80 143-228 7-90 (105)
333 TIGR02181 GRX_bact Glutaredoxi 83.4 1 2.2E-05 37.7 2.8 52 158-221 2-54 (79)
334 cd03418 GRX_GRXb_1_3_like Glut 83.2 1.7 3.7E-05 35.7 4.1 53 157-221 2-56 (75)
335 cd03027 GRX_DEP Glutaredoxin ( 83.2 1.9 4.1E-05 35.5 4.4 53 157-221 3-56 (73)
336 cd03029 GRX_hybridPRX5 Glutare 83.1 1.7 3.6E-05 35.7 4.0 69 157-249 3-71 (72)
337 KOG3171 Conserved phosducin-li 82.9 1 2.3E-05 45.1 3.0 84 134-228 136-223 (273)
338 KOG3170 Conserved phosducin-li 81.6 1.5 3.3E-05 43.6 3.6 103 137-252 92-200 (240)
339 PTZ00137 2-Cys peroxiredoxin; 81.6 3 6.5E-05 43.8 6.1 43 153-195 98-142 (261)
340 TIGR02740 TraF-like TraF-like 81.1 7.5 0.00016 41.0 9.0 69 292-362 184-262 (271)
341 PRK00293 dipZ thiol:disulfide 79.5 6.4 0.00014 46.1 8.5 57 306-362 508-568 (571)
342 PRK03147 thiol-disulfide oxido 79.3 8.2 0.00018 37.0 8.0 43 320-362 128-170 (173)
343 PRK10954 periplasmic protein d 78.5 1.7 3.7E-05 43.8 3.0 41 153-193 37-80 (207)
344 PF13462 Thioredoxin_4: Thiore 78.5 1.6 3.4E-05 41.4 2.6 42 152-193 11-54 (162)
345 TIGR02189 GlrX-like_plant Glut 77.5 2.6 5.6E-05 37.4 3.5 56 157-226 10-69 (99)
346 PRK10638 glutaredoxin 3; Provi 76.7 3.8 8.2E-05 34.7 4.2 54 157-222 4-58 (83)
347 PHA03050 glutaredoxin; Provisi 76.5 2.1 4.5E-05 38.7 2.6 56 157-221 15-74 (108)
348 cd03028 GRX_PICOT_like Glutare 74.9 3.8 8.3E-05 35.5 3.8 50 163-226 21-71 (90)
349 COG0695 GrxC Glutaredoxin and 72.9 5.3 0.00012 33.9 4.1 53 157-222 3-59 (80)
350 PF05768 DUF836: Glutaredoxin- 72.0 4.3 9.3E-05 34.4 3.3 80 157-250 2-81 (81)
351 PRK13189 peroxiredoxin; Provis 71.2 4.8 0.0001 41.2 4.1 42 155-196 38-80 (222)
352 smart00594 UAS UAS domain. 70.8 24 0.00053 32.2 8.4 49 312-360 68-121 (122)
353 PRK13191 putative peroxiredoxi 70.8 6.2 0.00014 40.1 4.8 41 156-196 37-78 (215)
354 PRK11657 dsbG disulfide isomer 69.2 13 0.00028 38.8 6.9 27 152-178 116-142 (251)
355 PF13098 Thioredoxin_2: Thiore 68.0 6.7 0.00015 34.7 3.9 41 320-360 72-112 (112)
356 TIGR00365 monothiol glutaredox 67.3 9.9 0.00022 33.5 4.8 47 163-221 25-72 (97)
357 PF11009 DUF2847: Protein of u 65.4 25 0.00054 31.7 6.9 93 262-356 4-104 (105)
358 cd03011 TlpA_like_ScsD_MtbDsbE 64.9 33 0.00071 30.7 7.9 38 320-358 83-120 (123)
359 cd03013 PRX5_like Peroxiredoxi 60.6 17 0.00036 34.8 5.4 54 154-207 30-87 (155)
360 PRK14018 trifunctional thiored 60.5 31 0.00068 39.9 8.3 42 320-361 129-170 (521)
361 PF02966 DIM1: Mitosis protein 60.1 7.4 0.00016 36.4 2.6 66 151-226 18-84 (133)
362 cd03009 TryX_like_TryX_NRX Try 59.3 26 0.00056 32.0 6.2 23 320-342 89-111 (131)
363 KOG0908 Thioredoxin-like prote 58.1 42 0.00092 34.9 7.8 70 289-363 36-105 (288)
364 KOG1731 FAD-dependent sulfhydr 58.1 21 0.00045 41.2 6.2 54 288-341 71-127 (606)
365 PF13728 TraF: F plasmid trans 57.2 59 0.0013 33.1 8.9 65 292-358 138-212 (215)
366 KOG0914 Thioredoxin-like prote 56.7 19 0.00041 36.6 5.0 62 278-341 145-216 (265)
367 cd02973 TRX_GRX_like Thioredox 56.1 30 0.00066 27.4 5.4 40 294-336 19-58 (67)
368 PRK10824 glutaredoxin-4; Provi 55.0 14 0.0003 33.9 3.5 28 163-196 28-55 (115)
369 KOG0724 Zuotin and related mol 54.4 11 0.00024 40.8 3.4 52 49-100 4-62 (335)
370 PRK12759 bifunctional gluaredo 53.6 14 0.00031 41.4 4.1 60 157-222 4-66 (410)
371 TIGR00412 redox_disulf_2 small 53.5 37 0.0008 28.2 5.7 58 293-360 17-75 (76)
372 PF11833 DUF3353: Protein of u 52.1 22 0.00048 35.7 4.7 38 46-88 1-38 (194)
373 KOG3171 Conserved phosducin-li 51.1 47 0.001 33.7 6.7 82 280-365 162-252 (273)
374 PF13446 RPT: A repeated domai 51.0 15 0.00032 29.5 2.8 44 38-89 6-49 (62)
375 cd03026 AhpF_NTD_C TRX-GRX-lik 49.9 94 0.002 26.8 7.8 68 279-354 13-84 (89)
376 cd02959 ERp19 Endoplasmic reti 48.6 20 0.00044 32.6 3.6 65 277-342 18-88 (117)
377 KOG3414 Component of the U4/U6 47.4 1.5E+02 0.0033 27.7 8.8 70 268-341 14-88 (142)
378 cd03068 PDI_b_ERp72 PDIb famil 46.3 30 0.00065 31.0 4.2 92 144-251 9-106 (107)
379 cd03010 TlpA_like_DsbE TlpA-li 45.5 54 0.0012 29.6 6.0 37 320-356 90-126 (127)
380 cd02966 TlpA_like_family TlpA- 44.9 82 0.0018 26.7 6.9 23 320-342 87-109 (116)
381 cd02955 SSP411 TRX domain, SSP 44.4 1.4E+02 0.0031 27.5 8.6 18 325-342 75-92 (124)
382 cd02964 TryX_like_family Trypa 44.1 57 0.0012 29.9 5.9 22 320-341 89-110 (132)
383 PF13905 Thioredoxin_8: Thiore 42.8 1.1E+02 0.0024 25.8 7.2 60 278-341 34-93 (95)
384 COG2143 Thioredoxin-related pr 41.8 49 0.0011 32.1 5.0 37 320-356 105-141 (182)
385 PF15096 G6B: G6B family 41.0 28 0.00061 34.3 3.3 26 614-639 135-160 (224)
386 TIGR02738 TrbB type-F conjugat 39.7 1.5E+02 0.0032 28.5 8.2 69 292-362 68-151 (153)
387 PF13743 Thioredoxin_5: Thiore 38.9 14 0.0003 36.3 1.0 28 159-186 2-29 (176)
388 KOG1752 Glutaredoxin and relat 38.5 45 0.00098 30.0 4.1 34 157-194 16-49 (104)
389 PF08082 PRO8NT: PRO8NT (NUC06 38.4 28 0.00061 33.1 2.8 21 668-688 123-143 (152)
390 KOG2603 Oligosaccharyltransfer 37.9 3.5E+02 0.0076 29.2 11.0 99 262-363 45-165 (331)
391 PF03988 DUF347: Repeat of Unk 36.4 55 0.0012 25.8 3.8 39 596-635 13-55 (55)
392 cd02991 UAS_ETEA UAS family, E 36.1 2.8E+02 0.006 25.2 9.0 42 320-361 66-110 (116)
393 PLN02919 haloacid dehalogenase 35.6 1.3E+02 0.0028 38.1 8.9 85 278-363 420-535 (1057)
394 COG4232 Thiol:disulfide interc 35.5 53 0.0012 38.2 5.0 56 308-363 510-567 (569)
395 TIGR02739 TraF type-F conjugat 35.3 1.9E+02 0.0041 30.4 8.7 66 292-359 168-243 (256)
396 PF14687 DUF4460: Domain of un 32.1 66 0.0014 29.4 4.1 44 47-90 4-54 (112)
397 PF11522 Pik1: Yeast phosphati 30.4 82 0.0018 24.7 3.7 32 591-622 8-49 (51)
398 COG3019 Predicted metal-bindin 30.4 1.2E+02 0.0026 28.9 5.5 78 154-252 25-103 (149)
399 PF13192 Thioredoxin_3: Thiore 27.4 3.5E+02 0.0076 22.2 8.1 37 319-361 39-76 (76)
400 TIGR00385 dsbE periplasmic pro 26.4 90 0.0019 30.2 4.3 43 320-362 127-169 (173)
401 COG1225 Bcp Peroxiredoxin [Pos 26.4 1.5E+02 0.0032 28.8 5.6 56 152-207 29-86 (157)
402 cd02967 mauD Methylamine utili 25.3 1.8E+02 0.0039 25.3 5.8 42 293-334 40-82 (114)
403 KOG3170 Conserved phosducin-li 23.5 4.7E+02 0.01 26.6 8.5 88 356-492 81-168 (240)
404 KOG2501 Thioredoxin, nucleored 23.4 1.8E+02 0.0039 28.2 5.6 36 307-342 92-127 (157)
405 PRK13703 conjugal pilus assemb 23.4 3.4E+02 0.0073 28.4 8.0 66 292-359 161-236 (248)
406 PF13462 Thioredoxin_4: Thiore 23.3 93 0.002 29.1 3.7 35 202-251 128-162 (162)
407 cd03070 PDI_b_ERp44 PDIb famil 23.2 5.1E+02 0.011 22.7 8.1 67 279-352 18-85 (91)
408 KOG1672 ATP binding protein [P 23.1 2.1E+02 0.0046 28.8 6.1 62 278-342 85-149 (211)
409 PHA02125 thioredoxin-like prot 22.2 1.9E+02 0.0041 23.7 4.9 17 319-335 35-51 (75)
410 PF13743 Thioredoxin_5: Thiore 22.0 56 0.0012 32.0 1.9 19 201-225 138-156 (176)
411 PRK15412 thiol:disulfide inter 21.4 1.5E+02 0.0032 29.1 4.8 43 320-362 132-174 (185)
412 TIGR02742 TrbC_Ftype type-F co 21.3 1.6E+02 0.0034 27.6 4.7 43 319-361 60-112 (130)
413 PF15179 Myc_target_1: Myc tar 21.2 1.1E+02 0.0024 30.3 3.6 21 613-633 33-53 (197)
414 PF07315 DUF1462: Protein of u 21.1 2E+02 0.0044 25.2 4.8 30 444-473 32-67 (93)
415 PF09673 TrbC_Ftype: Type-F co 21.0 5E+02 0.011 23.5 7.8 21 319-339 60-80 (113)
416 PF12725 DUF3810: Protein of u 20.7 2.9E+02 0.0062 29.9 7.2 61 30-90 75-149 (318)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-34 Score=316.60 Aligned_cols=334 Identities=19% Similarity=0.274 Sum_probs=253.2
Q ss_pred cceeEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc---cceeeeecchhhhhhHHHhhCCCCcc
Q 005592 135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQI 211 (689)
Q Consensus 135 ~~~V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~---~~vg~Vdc~~~~~~~~L~~k~~~~~~ 211 (689)
...|++||.+||+..|..+..+||+|||||||||++++|+|+++|+.|+.. +.+|+|||+++ ..+|.+++
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~---~~~~~~y~---- 96 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE---SDLASKYE---- 96 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh---hhhHhhhc----
Confidence 346899999999999999999999999999999999999999999999874 58999999966 45999998
Q ss_pred cccccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHHhccCCcceecccchhhhhhhhhcCCCcEEEEEEeCCCCC
Q 005592 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER 291 (689)
Q Consensus 212 f~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~k~~Vl~f~~~~~~ 291 (689)
|+|||||++|++|.. ...|+|+|++++|+.|++++ .+|+...+.+.+.+..|+.+. +.+.+.+|.+...
T Consensus 97 --v~gyPTlkiFrnG~~----~~~Y~G~r~adgIv~wl~kq--~gPa~~~l~~~~~a~~~l~~~--~~~vig~F~d~~~- 165 (493)
T KOG0190|consen 97 --VRGYPTLKIFRNGRS----AQDYNGPREADGIVKWLKKQ--SGPASKTLKTVDEAEEFLSKK--DVVVIGFFKDLES- 165 (493)
T ss_pred --CCCCCeEEEEecCCc----ceeccCcccHHHHHHHHHhc--cCCCceecccHHHHHhhccCC--ceEEEEEeccccc-
Confidence 889999999999963 57999999999999999998 688887777666688888763 2333445543221
Q ss_pred CcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCC--CCEEEEEeCCCCCceeecCCCChHHHHHHHHhcCCCCCc
Q 005592 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELP 369 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~--~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~~k~~~lp 369 (689)
........|...++.+.|++.. ..++.+++++.. .+.+++++..+...+.|.|.++.+.|.+||..+++|++.
T Consensus 166 ~~~~~~~~a~~l~~d~~F~~ts-----~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~ 240 (493)
T KOG0190|consen 166 LAESFFDAASKLRDDYKFAHTS-----DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVT 240 (493)
T ss_pred chHHHHHHHHhccccceeeccC-----cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccc
Confidence 2222333444556677777321 356888888853 566999999888877788999999999999999999999
Q ss_pred cccccchhhhccCccCccCCCCCCcccEEEEEecC-CchhHHHHHHHHHHHHHhhccccccccccccccchHHHHHcCCC
Q 005592 370 QLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNK 448 (689)
Q Consensus 370 ~lts~~~~~~~c~~~~~~~~~k~~~~~lCVIl~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~k~~ 448 (689)
.+|..+.....- ..- .+-++++.. .....+.+++.++++|+ +|++
T Consensus 241 ~ft~~~~~~~~~------~~~-----~~~~~~~~~~~~~~~e~~~~~~~~vAk----------------------~f~~- 286 (493)
T KOG0190|consen 241 EFTVANNAKIYS------SFV-----KLGLDFFVFFKCNRFEELRKKFEEVAK----------------------KFKG- 286 (493)
T ss_pred eecccccceeec------ccc-----ccceeEEeccccccHHHHHHHHHHHHH----------------------hccc-
Confidence 999987654221 111 244555554 23367888888888877 7887
Q ss_pred cEEEEEEeCcchHHHHHHhcccCCcccccCCcCCCCCCC-eEEEEEeecCCCcccceeecccCccccccccccCCccccc
Q 005592 449 RLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVP-RLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQL 527 (689)
Q Consensus 449 ~l~F~wvd~~~q~~f~~~f~~~~~~~~~c~~~~~~~~~P-~lvI~~~rrn~~~~~~k~~~~~w~~l~~~~~~~~~~~~~~ 527 (689)
.++|+++|.+..+..++.|-+.+. ..| .++++ +..+ -||. + ++++.
T Consensus 287 ~l~Fi~~d~e~~~~~~~~~Gl~~~------------~~~~~~v~~----~~~~--~Ky~------~---~~e~~------ 333 (493)
T KOG0190|consen 287 KLRFILIDPESFARVLEFFGLEEE------------QLPIRAVIL----NEDG--SKYP------L---EEEEL------ 333 (493)
T ss_pred ceEEEEEChHHhhHHHHhcCcccc------------cCCeeEEee----cccc--cccc------C---ccccc------
Confidence 599999999888888888844322 124 55555 5555 4665 3 44322
Q ss_pred hhccCCCCchHHHHHHHHHHhcCCCCCCCCcccCCCCCCCC
Q 005592 528 VVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVP 568 (689)
Q Consensus 528 ~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~p~l~~ 568 (689)
+...|+.|+.+++. ++..+.++++++|+=++
T Consensus 334 --------~~~~ie~f~~~~l~--Gk~~p~~kSqpiPe~~~ 364 (493)
T KOG0190|consen 334 --------DQENIESFVKDFLD--GKVKPHLKSQPIPEDND 364 (493)
T ss_pred --------cHHHHHHHHHHHhc--CccccccccCCCCcccc
Confidence 22469999999999 67777779999999776
No 2
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.98 E-value=1.7e-31 Score=268.18 Aligned_cols=278 Identities=19% Similarity=0.281 Sum_probs=197.0
Q ss_pred CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc---cceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCC
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~---~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~ 227 (689)
.++..|+|.||||||+||+++.|+|.++.-+|+.. +++|++||+ ....+|.+++ |+|||||++|+++.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT---~f~aiAnefg------iqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDAT---RFPAIANEFG------IQGYPTIKFFKGDH 111 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccc---cchhhHhhhc------cCCCceEEEecCCe
Confidence 46789999999999999999999999999999875 499999999 5555899988 88999999999985
Q ss_pred CCCCCccccccccCHHHHHHHHHHHhccCCcceecccchhhhhhhhhcCCCcEEEEEEeCCCCCCcHHH-HHHHHhcccC
Q 005592 228 KSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFV-RQISRNYWAY 306 (689)
Q Consensus 228 ~~~~~~~~Y~G~rs~~~Iv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~k~~Vl~f~~~~~~~~~~~-~~~A~~~~~~ 306 (689)
...|.|+|+.++|++|+.+- ..|-...+.... ..|..-...+.|.+|||+... .|+. .+.-.+ .+.
T Consensus 112 -----a~dYRG~R~Kd~iieFAhR~--a~aiI~pi~enQ--~~fehlq~Rhq~ffVf~Gtge---~PL~d~fidAA-Se~ 178 (468)
T KOG4277|consen 112 -----AIDYRGGREKDAIIEFAHRC--AAAIIEPINENQ--IEFEHLQARHQPFFVFFGTGE---GPLFDAFIDAA-SEK 178 (468)
T ss_pred -----eeecCCCccHHHHHHHHHhc--ccceeeecChhH--HHHHHHhhccCceEEEEeCCC---CcHHHHHHHHh-hhh
Confidence 57999999999999999886 233333343322 223332335679999998432 3333 331111 124
Q ss_pred ceEEEEEecccccHHHHhhcC-CCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHhcCCCCCccccccchhhhccCccC
Q 005592 307 ASFAFVLWREEESSIWWNTFE-VESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDARG 385 (689)
Q Consensus 307 ~~f~~V~~~~~~s~~l~~~f~-V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~~k~~~lp~lts~~~~~~~c~~~~ 385 (689)
...+++... +++++-.++ .+..|+|.+||+.+-. +.++ .+.++|.+||+.+++|.+-..++....+.+-
T Consensus 179 ~~~a~FfSa---seeVaPe~~~~kempaV~VFKDetf~-i~de--~dd~dLseWinRERf~~fLa~dgflL~EiG~---- 248 (468)
T KOG4277|consen 179 FSVARFFSA---SEEVAPEENDAKEMPAVAVFKDETFE-IEDE--GDDEDLSEWINRERFPGFLAADGFLLAEIGA---- 248 (468)
T ss_pred eeeeeeecc---ccccCCcccchhhccceEEEccceeE-EEec--CchhHHHHHHhHhhccchhhcccchHHHhCc----
Confidence 444444432 233444443 3458999999985422 2223 3567899999999999998888887776443
Q ss_pred ccCCCCCCcccEEEEEecCC------chhHHHHHHHHHHHHHhhccccccccccccccchHHHHHcCCCcEEEEEEeCcc
Q 005592 386 YSRAGSDTTIWYCVILAGRL------SPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEA 459 (689)
Q Consensus 386 ~~~~~k~~~~~lCVIl~~~~------~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~k~~~l~F~wvd~~~ 459 (689)
++| |+++++... +.++.++....+++++.++.+-+ +- .+++|+|+||
T Consensus 249 ---sGK-----LVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pd----------------fh-~dFQF~hlDG-- 301 (468)
T KOG4277|consen 249 ---SGK-----LVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPD----------------FH-NDFQFAHLDG-- 301 (468)
T ss_pred ---CCc-----eEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChh----------------hh-hhceeeccch--
Confidence 455 877777542 34566677777777775554311 11 4599999999
Q ss_pred hHHHHHHhcccCCcccccCCcCCCCCCCeEEEEEeecCCCcccceee
Q 005592 460 QDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIE 506 (689)
Q Consensus 460 q~~f~~~f~~~~~~~~~c~~~~~~~~~P~lvI~~~rrn~~~~~~k~~ 506 (689)
.++++.++|.+.+ .|++||+ |.+. +.|-
T Consensus 302 -nD~~nqilM~als------------~P~l~i~----Ntsn--qeYf 329 (468)
T KOG4277|consen 302 -NDLANQILMAALS------------EPHLFIF----NTSN--QEYF 329 (468)
T ss_pred -hHHHHHHHHHhhc------------CCeEEEE----ecCc--hhee
Confidence 8999999888753 5999999 9988 5664
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.95 E-value=1.7e-26 Score=258.75 Aligned_cols=332 Identities=16% Similarity=0.218 Sum_probs=233.7
Q ss_pred eeEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc---cceeeeecchhhhhhHHHhhCCCCcccc
Q 005592 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFF 213 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~---~~vg~Vdc~~~~~~~~L~~k~~~~~~f~ 213 (689)
.|..||.++|++.+.++++++|.||||||++|+++.|+|.++|+.+++. +.++.|||+++. .+|++++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~---~l~~~~~------ 72 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK---DLAQKYG------ 72 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH---HHHHhCC------
Confidence 3688999999999988889999999999999999999999999998754 699999999654 4899998
Q ss_pred cccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHHhccCCcceecccchhhhhhhhhcCCCcEEEEEE-eCCCCCC
Q 005592 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFF-SKTGERA 292 (689)
Q Consensus 214 V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~k~~Vl~f-~~~~~~~ 292 (689)
|.+|||+++|.+|.. ....|.|.++.+.|++|+.+.+ .|....+++.+.++.|+.. +.+.+|+| .+..+..
T Consensus 73 i~~~Pt~~~~~~g~~---~~~~~~g~~~~~~l~~~i~~~~--~~~~~~i~~~~~~~~~~~~---~~~~vi~~~~~~~~~~ 144 (462)
T TIGR01130 73 VSGYPTLKIFRNGED---SVSDYNGPRDADGIVKYMKKQS--GPAVKEIETVADLEAFLAD---DDVVVIGFFKDLDSEL 144 (462)
T ss_pred CccccEEEEEeCCcc---ceeEecCCCCHHHHHHHHHHhc--CCCceeecCHHHHHHHHhc---CCcEEEEEECCCCcHH
Confidence 889999999998863 1468999999999999999882 3444446655557888875 23445554 4322223
Q ss_pred cHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCc--eeecCCC--ChHHHHHHHHhcCCCCC
Q 005592 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSF--NNSRLSEVMEQNKLQEL 368 (689)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p--~~y~g~~--~~~~L~~fI~~~k~~~l 368 (689)
...+..+|..+.....| ++... ...+.+++++. .+.+++|+...... ..|.|+. +.+.|.+||..+++|.+
T Consensus 145 ~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v 219 (462)
T TIGR01130 145 NDTFLSVAEKLRDVYFF-FAHSS---DVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLV 219 (462)
T ss_pred HHHHHHHHHHhhhccce-EEecC---CHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCce
Confidence 34455577766555442 22211 23566777764 46666665543332 3467765 45799999999999999
Q ss_pred ccccccchhhhccCccCccCCCCCCcccEEEEEecCC-c-hhHHHHHHHHHHHHHhhccccccccccccccchHHHHHcC
Q 005592 369 PQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-S-PELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFR 446 (689)
Q Consensus 369 p~lts~~~~~~~c~~~~~~~~~k~~~~~lCVIl~~~~-~-~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~k 446 (689)
++++..+.... +.. . .++++++... + ..++.+.+.++++++ +++
T Consensus 220 ~~~~~~~~~~~-~~~-----~------~~~~l~~~~~~~~~~~~~~~~~~~~~a~----------------------~~~ 265 (462)
T TIGR01130 220 GEFTQETAAKY-FES-----G------PLVVLYYNVDESLDPFEELRNRFLEAAK----------------------KFR 265 (462)
T ss_pred EeeCCcchhhH-hCC-----C------CceeEEEEecCCchHHHHHHHHHHHHHH----------------------HCC
Confidence 99988876542 211 0 2444444322 2 224677777777766 677
Q ss_pred CCcEEEEEEeCcchHHHHHHhcccCCcccccCCcCCCCCCCeEEEEEeecCCCcccceeecccCccccccccccCCcccc
Q 005592 447 NKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQ 526 (689)
Q Consensus 447 ~~~l~F~wvd~~~q~~f~~~f~~~~~~~~~c~~~~~~~~~P~lvI~~~rrn~~~~~~k~~~~~w~~l~~~~~~~~~~~~~ 526 (689)
+..+.|+|+|+.....++..|.... .++|.++|+ |.++ ..+|. + +++
T Consensus 266 ~~~i~f~~~d~~~~~~~~~~~~~~~------------~~~P~~vi~----~~~~-~~~y~------~---~~~------- 312 (462)
T TIGR01130 266 GKFVNFAVADEEDFGRELEYFGLKA------------EKFPAVAIQ----DLEG-NKKYP------M---DQE------- 312 (462)
T ss_pred CCeEEEEEecHHHhHHHHHHcCCCc------------cCCceEEEE----eCCc-ccccC------C---CcC-------
Confidence 6579999999988888888773322 146999998 6654 12343 2 211
Q ss_pred chhccCCCCchHHHHHHHHHHhcCCCCCCCCcccCCCCCC
Q 005592 527 LVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPEL 566 (689)
Q Consensus 527 ~~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~p~l 566 (689)
..+.+.|..||.+++. ++..+.+.++++|+-
T Consensus 313 -------~~~~~~i~~fi~~~~~--g~~~~~~~se~~p~~ 343 (462)
T TIGR01130 313 -------EFSSENLEAFVKDFLD--GKLKPYLKSEPIPED 343 (462)
T ss_pred -------CCCHHHHHHHHHHHhc--CCCCeeeccCCCCcc
Confidence 1256899999999998 555566678888765
No 4
>PTZ00102 disulphide isomerase; Provisional
Probab=99.93 E-value=1.6e-24 Score=244.58 Aligned_cols=318 Identities=15% Similarity=0.223 Sum_probs=219.3
Q ss_pred eeEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhc---ccceeeeecchhhhhhHHHhhCCCCcccc
Q 005592 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF 213 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~---~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~ 213 (689)
.|..|+.++|+..+..++++||.||||||+||+++.|+|.++|+.+.. .+.++.|||+++. .+|++++
T Consensus 33 ~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~---~l~~~~~------ 103 (477)
T PTZ00102 33 HVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM---ELAQEFG------ 103 (477)
T ss_pred CcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH---HHHHhcC------
Confidence 468899999999998888999999999999999999999999998864 3699999999654 4899988
Q ss_pred cccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHHhccCCcceecccchhhhhhhhhcCCCcEEEE-EEeCCCCCC
Q 005592 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTGERA 292 (689)
Q Consensus 214 V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~k~~Vl-~f~~~~~~~ 292 (689)
|++|||+++|.+|.. ..|.|.++.++|++|+.+. ..|....+++.+....+... ..+.++ .+.+..+..
T Consensus 104 i~~~Pt~~~~~~g~~-----~~y~g~~~~~~l~~~l~~~--~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 173 (477)
T PTZ00102 104 VRGYPTIKFFNKGNP-----VNYSGGRTADGIVSWIKKL--TGPAVTEVESASEIKLIAKK---IFVAFYGEYTSKDSEL 173 (477)
T ss_pred CCcccEEEEEECCce-----EEecCCCCHHHHHHHHHHh--hCCCceeecCHHHHHHhhcc---CcEEEEEEeccCCcHH
Confidence 889999999999853 4899999999999999998 34555556554433443322 224344 344332222
Q ss_pred cHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHhcCCCCCcccc
Q 005592 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLR 372 (689)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~~k~~~lp~lt 372 (689)
...+..+|..+++...|..+. +. ..+.+++++..+.... +.+..+.+.|.+||..+.+|.+.+++
T Consensus 174 ~~~f~~~a~~~~~~~~F~~~~--~~------------~~~~~~~~~~~~~~~~-~~~~~~~~~l~~fI~~~~~P~~~~~~ 238 (477)
T PTZ00102 174 YKKFEEVADKHREHAKFFVKK--HE------------GKNKIYVLHKDEEGVE-LFMGKTKEELEEFVSTESFPLFAEIN 238 (477)
T ss_pred HHHHHHHHHhccccceEEEEc--CC------------CCCcEEEEecCCCCcc-cCCCCCHHHHHHHHHHcCCCceeecC
Confidence 233445777777666665432 11 2467788876554443 33445889999999999999999999
Q ss_pred ccchhhhccCccCccCCCCCCcccEEEEEecCCchhHHHHHHHHHHHHHhhccccccccccccccchHHHHHcCCCcEEE
Q 005592 373 SVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTF 452 (689)
Q Consensus 373 s~~~~~~~c~~~~~~~~~k~~~~~lCVIl~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~k~~~l~F 452 (689)
..+.....- .+ +.++++.....+.+...+.++++|+ +++++ +.|
T Consensus 239 ~~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~~~A~----------------------~~~~~-~~f 282 (477)
T PTZ00102 239 AENYRRYIS-------SG------KDLVWFCGTTEDYDKYKSVVRKVAR----------------------KLREK-YAF 282 (477)
T ss_pred ccchHHHhc-------CC------ccEEEEecCHHHHHHHHHHHHHHHH----------------------hccCc-eEE
Confidence 998765221 11 2233333333445667777877776 67665 899
Q ss_pred EEEeCcchHH-HHHHhcccCCcccccCCcCCCCCCCeEEEEEeecCCCcccceeecccCccccccccccCCccccchhcc
Q 005592 453 AWLDGEAQDR-YCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRY 531 (689)
Q Consensus 453 ~wvd~~~q~~-f~~~f~~~~~~~~~c~~~~~~~~~P~lvI~~~rrn~~~~~~k~~~~~w~~l~~~~~~~~~~~~~~~~~~ 531 (689)
+|+|+..... +++.|... ..|.+++. +..+ +|. + +++ .
T Consensus 283 ~~vd~~~~~~~~~~~~gi~--------------~~P~~~i~----~~~~---~y~------~---~~~-~---------- 321 (477)
T PTZ00102 283 VWLDTEQFGSHAKEHLLIE--------------EFPGLAYQ----SPAG---RYL------L---PPA-K---------- 321 (477)
T ss_pred EEEechhcchhHHHhcCcc--------------cCceEEEE----cCCc---ccC------C---Ccc-c----------
Confidence 9999976554 55555222 24887776 4333 332 1 211 0
Q ss_pred CCCCchHHHHHHHHHHhcCCCCCCCCcccCCCCCCC
Q 005592 532 NGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELV 567 (689)
Q Consensus 532 ~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~p~l~ 567 (689)
.+..+.+.|..||.+++. ++....+.++++|+-.
T Consensus 322 ~~~~~~~~l~~Fv~~~~~--gk~~~~~~se~~p~~~ 355 (477)
T PTZ00102 322 ESFDSVEALIEFFKDVEA--GKVEKSIKSEPIPEEQ 355 (477)
T ss_pred cccCCHHHHHHHHHHHhC--CCCCcccccCCCCCCC
Confidence 011256899999999998 5666666788887643
No 5
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=5.5e-24 Score=220.25 Aligned_cols=134 Identities=17% Similarity=0.130 Sum_probs=99.3
Q ss_pred CccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHHHHcCChhhhhhhhccCCchhhhhh-hh
Q 005592 35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHIL-EK 110 (689)
Q Consensus 35 ~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~~~~~-~~ 110 (689)
...|||++|||+++|+..|||+||||||++||||+|| .++++|++|+.|||||+||++|+.||.||+.++.+.. ..
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~ 93 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDG 93 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccccc
Confidence 3689999999999999999999999999999999998 4778999999999999999999999999988876432 11
Q ss_pred hccc--cCccccccccCCCCCCCCCCcceeEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHH
Q 005592 111 VREQ--YGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL 181 (689)
Q Consensus 111 ~~~~--~~~~~f~~~~f~~~~~~~~~~~~V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~ 181 (689)
.++. ++.+.++..+||+..++.. +... .....|++.++.-.|.||-...+.|....+-
T Consensus 94 ~~g~~~~~~f~~~f~dfg~~~~g~~-------~~e~------~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~ 153 (336)
T KOG0713|consen 94 EGGGGGNDIFSAFFGDFGVTVGGNP-------LEEA------LPKGSDVSSDLEKQLEHFYMGNFVEEVREKG 153 (336)
T ss_pred ccCCcccchHHHhhcccccccCCCc-------ccCC------CCCCceEEeehhhchhhhhcccHHHHHhccC
Confidence 1111 3445544445544333211 1111 2334577777778888998888777765543
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.82 E-value=1.6e-20 Score=170.97 Aligned_cols=100 Identities=8% Similarity=-0.015 Sum_probs=89.9
Q ss_pred eeEEecCCCCccc---cCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHH-hhCCCCccc
Q 005592 137 AFNVVTSEDFPSI---FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLA-ERKPIGQIF 212 (689)
Q Consensus 137 ~V~~Lt~~nF~~~---I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~-~k~~~~~~f 212 (689)
.|++|+.+||++. +.+++++||.||||||++|+.+.|.|+++|+.+++.+.+++|||+++.. +| ++++
T Consensus 10 ~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~---l~~~~~~----- 81 (113)
T cd03006 10 PVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG---KCRKQKH----- 81 (113)
T ss_pred CeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH---HHHHhcC-----
Confidence 6899999999987 4789999999999999999999999999999998888999999996554 78 5777
Q ss_pred ccccccEEEEcCCCCCCCCCccccccccCHHHHHHHH
Q 005592 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 213 ~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
|++||||++|++|.. ...|.|.++.+.|+.|+
T Consensus 82 -I~~~PTl~lf~~g~~----~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 82 -FFYFPVIHLYYRSRG----PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred -CcccCEEEEEECCcc----ceEEeCCCCHHHHHhhC
Confidence 889999999998864 57899999999999884
No 7
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.81 E-value=5.5e-19 Score=179.28 Aligned_cols=214 Identities=15% Similarity=0.231 Sum_probs=149.1
Q ss_pred ecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHh-----cccceeeeecchhhhhhHHHhhCCCCcccccc
Q 005592 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-----GIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (689)
Q Consensus 141 Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~-----~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~ 215 (689)
|+.+|++.++++.+.+||.|||+||..++.+.|+|+++|..++ +.+..|+|||+ .+..|+.+|. |+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd---~e~~ia~ky~------I~ 71 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD---KEDDIADKYH------IN 71 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc---hhhHHhhhhc------cc
Confidence 4678999999999999999999999999999999999999885 34578999999 5556899887 99
Q ss_pred cccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHHhccCCcceecccchhhhhhhhhc-CCCcEEEEEEeCCCCCCcH
Q 005592 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKT-GPHKVKVIFFSKTGERASP 294 (689)
Q Consensus 216 gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~-~~~k~~Vl~f~~~~~~~~~ 294 (689)
.|||+++|.+|.. -..+|.|.|++++|.+|+++++. -|-.. ..+ ++++-+-. +.....+.+|.++.....-
T Consensus 72 KyPTlKvfrnG~~---~~rEYRg~RsVeaL~efi~kq~s-~~i~E-f~s---l~~l~n~~~p~K~~vIgyF~~kdspey~ 143 (375)
T KOG0912|consen 72 KYPTLKVFRNGEM---MKREYRGQRSVEALIEFIEKQLS-DPINE-FES---LDQLQNLDIPSKRTVIGYFPSKDSPEYD 143 (375)
T ss_pred cCceeeeeeccch---hhhhhccchhHHHHHHHHHHHhc-cHHHH-HHh---HHHHHhhhccccceEEEEeccCCCchHH
Confidence 9999999999975 25699999999999999999832 22111 111 22222221 1233455566544322233
Q ss_pred HHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCce-eecCCC-ChHHHHHHHHhcCCCCCcccc
Q 005592 295 FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSF-NNSRLSEVMEQNKLQELPQLR 372 (689)
Q Consensus 295 ~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~-~y~g~~-~~~~L~~fI~~~k~~~lp~lt 372 (689)
.++.+|.-+++...|.- ..++ +...-.-...+ +++|.+....+. .|.|.+ +...|..||...-.|+|-++|
T Consensus 144 ~~~kva~~lr~dc~f~V-~~gD-----~~~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiT 216 (375)
T KOG0912|consen 144 NLRKVASLLRDDCVFLV-GFGD-----LLKPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREIT 216 (375)
T ss_pred HHHHHHHHHhhccEEEe-eccc-----cccCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhh
Confidence 44667777777765432 2222 11111111122 555655444432 588987 678899999999999999999
Q ss_pred ccchhh
Q 005592 373 SVTSME 378 (689)
Q Consensus 373 s~~~~~ 378 (689)
-+|.-+
T Consensus 217 FeN~EE 222 (375)
T KOG0912|consen 217 FENAEE 222 (375)
T ss_pred hccHHH
Confidence 999765
No 8
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.8e-20 Score=199.33 Aligned_cols=70 Identities=30% Similarity=0.517 Sum_probs=66.0
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHHHHcCChhhhhhhhccCCchhh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~~ 105 (689)
..|||+||||+++||.+|||+|||+||++||||+|+ .++++|++|++|||||+||++|+.||+||..+..
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 469999999999999999999999999999999988 4788999999999999999999999999998754
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.78 E-value=1.4e-19 Score=161.14 Aligned_cols=100 Identities=23% Similarity=0.532 Sum_probs=90.4
Q ss_pred eeEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCccccccc
Q 005592 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~g 216 (689)
.|..||.++|+..+..+++|+|.||+|||++|+++.|.|+++|+.+++.+.+++|||++++. +|++++ |++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~---~~~~~~------v~~ 72 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM---LCRSQG------VNS 72 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH---HHHHcC------CCc
Confidence 36889999999999777999999999999999999999999999999888999999996544 889988 889
Q ss_pred ccEEEEcCCCCCCCCCccccccccCHHHHHHHH
Q 005592 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 217 yPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
|||+++|++|.. ...|.|.++.++|++|+
T Consensus 73 ~Pt~~~~~~g~~----~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 73 YPSLYVFPSGMN----PEKYYGDRSKESLVKFA 101 (101)
T ss_pred cCEEEEEcCCCC----cccCCCCCCHHHHHhhC
Confidence 999999998864 56899999999999884
No 10
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.78 E-value=7e-17 Score=167.44 Aligned_cols=333 Identities=16% Similarity=0.251 Sum_probs=205.6
Q ss_pred ccCCCCCCCCCCcceeEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHH-------HHHHHHHhccc-ceeeeecc
Q 005592 123 IDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW-------KTIAALLEGIA-NTGMVELG 194 (689)
Q Consensus 123 ~~f~~~~~~~~~~~~V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w-------~~~A~~L~~~~-~vg~Vdc~ 194 (689)
..||.|.|.+ .|..||.+||.+++.+.+...|.||.|-- .-+.....| +-+|+.|+..+ ++|.||..
T Consensus 25 LefP~YDGkD----RVi~LneKNfk~~lKkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~ 99 (383)
T PF01216_consen 25 LEFPEYDGKD----RVIDLNEKNFKRALKKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSK 99 (383)
T ss_dssp -SSSS-SSS------CEEE-TTTHHHHHHH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETT
T ss_pred cCCccCCCcc----ceEEcchhHHHHHHHhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccH
Confidence 3466676642 58999999999999999999999999974 333333333 33456666654 99999999
Q ss_pred hhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHHhccCCcceecccchhhhhhhhh
Q 005592 195 DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAK 274 (689)
Q Consensus 195 ~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~v~~lP~~~~it~~~~~~~Fl~~ 274 (689)
++. .||+++| +...++|.+|+.|. .++|.|.++++.|+.|+...+. -| +.+|+.......|-.-
T Consensus 100 Kd~---klAKKLg------v~E~~SiyVfkd~~-----~IEydG~~saDtLVeFl~dl~e-dP-VeiIn~~~e~~~Fe~i 163 (383)
T PF01216_consen 100 KDA---KLAKKLG------VEEEGSIYVFKDGE-----VIEYDGERSADTLVEFLLDLLE-DP-VEIINNKHELKAFERI 163 (383)
T ss_dssp TTH---HHHHHHT--------STTEEEEEETTE-----EEEE-S--SHHHHHHHHHHHHS-SS-EEEE-SHHHHHHHHH-
T ss_pred HHH---HHHHhcC------ccccCcEEEEECCc-----EEEecCccCHHHHHHHHHHhcc-cc-hhhhcChhhhhhhhhc
Confidence 544 4999999 77999999999995 4899999999999999999843 23 4446655445566543
Q ss_pred cCCCcEEEEEEeCCCCCCcH-HHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCC-CC
Q 005592 275 TGPHKVKVIFFSKTGERASP-FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FN 352 (689)
Q Consensus 275 ~~~~k~~Vl~f~~~~~~~~~-~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~-~~ 352 (689)
. ..++||.|.+..+.... .+..+|..|..++.|..+. ...++++++++ .-.|-+|.++..+|+...|. .+
T Consensus 164 e--d~~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFfAtf-----d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~ 235 (383)
T PF01216_consen 164 E--DDIKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFFATF-----DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYT 235 (383)
T ss_dssp ---SS-EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEEEE------SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--
T ss_pred c--cceeEEEEeCCCCcHHHHHHHHHHHhhcCceeEEEEe-----cchhhhhcCcc-ccceeeeccccCCCccCCCCCCC
Confidence 2 24777765433222112 2244888899999987775 45699999996 77899999999999987655 57
Q ss_pred hHHHHHHHHhcCCCCCccccccchhhhccCccCccCCCCCCcccEEEEEecC-CchhHHHHHHHHHHHHHhhcccccccc
Q 005592 353 NSRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNA 431 (689)
Q Consensus 353 ~~~L~~fI~~~k~~~lp~lts~~~~~~~c~~~~~~~~~k~~~~~lCVIl~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~ 431 (689)
...|.+||+.|+-|++-+|+..++++.=-.. .....++++.. .+++--++.+.|+++|+
T Consensus 236 e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd----------~~g~hIvaFaee~dpdG~efleilk~va~---------- 295 (383)
T PF01216_consen 236 EEELVEFIEEHKRPTLRKLRPEDMFETWEDD----------IDGIHIVAFAEEEDPDGFEFLEILKQVAR---------- 295 (383)
T ss_dssp HHHHHHHHHHT-S-SEEE--GGGHHHHHHSS----------SSSEEEEEE--TTSHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHhchhHhhhCChhhhhhhhccc----------CCCceEEEEecCCCCchHHHHHHHHHHHH----------
Confidence 7889999999999999999999988732211 11234555654 46666677788888877
Q ss_pred ccccccchHHHHHcCC-CcEEEEEEeCcchHHHHHHhcccCCcccccCCcCCCCCCCeEEEEEeecCCCcccceeecccC
Q 005592 432 ADTDQSLAPAAVAFRN-KRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPR 510 (689)
Q Consensus 432 ~~~~~~~~~~A~~~k~-~~l~F~wvd~~~q~~f~~~f~~~~~~~~~c~~~~~~~~~P~lvI~~~rrn~~~~~~k~~~~~w 510 (689)
.+.. ..++++|||-+.-+=++.+.-+. .|- +. .-|+|=|+ |.+. .... |
T Consensus 296 ------------~nt~np~LsivwIDPD~fPllv~yWE~t------F~I--dl-~~PqIGvV----nvtd--adsv---W 345 (383)
T PF01216_consen 296 ------------DNTDNPDLSIVWIDPDDFPLLVPYWEKT------FGI--DL-SRPQIGVV----NVTD--ADSV---W 345 (383)
T ss_dssp ------------HCTT-TT--EEEE-GGG-HHHHHHHHHH------HTT---T-TS-EEEEE----ETTT--SEEE---E
T ss_pred ------------hcCcCCceeEEEECCCCCchhHHHHHhh------cCc--cc-cCCceeEE----eccc--cccc---h
Confidence 3332 35999999997766555554111 000 11 12999999 8876 3444 7
Q ss_pred ccccccccccCCccccchhccCCCCchHHHHHHHHHHhc
Q 005592 511 NIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ 549 (689)
Q Consensus 511 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 549 (689)
+ -|++++. --+.++++.||+++|.
T Consensus 346 --~-dm~d~~d------------~pt~~~LedWieDVls 369 (383)
T PF01216_consen 346 --M-DMDDDDD------------LPTAEELEDWIEDVLS 369 (383)
T ss_dssp --C--STTTSS---------------HHHHHHHHHHHHC
T ss_pred --h-ccCCccc------------CCcHHHHHHHHHHHhc
Confidence 3 1132211 1157999999999997
No 11
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.77 E-value=3.1e-19 Score=162.09 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=86.3
Q ss_pred eEEecCCCCccccCCCCCEEEEEEc--CCCc---CCcCchHHHHHHHHHHhcccceeeeecchh--hhhhHHHhhCCCCc
Q 005592 138 FNVVTSEDFPSIFHDSKPWLIQVYS--DGSY---LCGQFSGAWKTIAALLEGIANTGMVELGDI--RLATHLAERKPIGQ 210 (689)
Q Consensus 138 V~~Lt~~nF~~~I~~~~~~LV~FYa--pwC~---~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~--~~~~~L~~k~~~~~ 210 (689)
+++||..||++.|.+++.+||+||| |||+ ||++|+|+|.++|.. +.||+|||++. .....||++++
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~--- 75 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYK--- 75 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhC---
Confidence 6889999999999999999999999 9999 888888888877654 68999999421 02345999998
Q ss_pred ccccc--cccEEEEcCCCCCCCCCccccccc-cCHHHHHHHHHHH
Q 005592 211 IFFRR--GLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWFATA 252 (689)
Q Consensus 211 ~f~V~--gyPTL~~f~~g~~~~~~~~~Y~G~-rs~~~Iv~fv~k~ 252 (689)
|+ |||||++|++|... .+..|.|+ |++++|++|++++
T Consensus 76 ---I~~~gyPTl~lF~~g~~~--~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 ---LDKESYPVIYLFHGGDFE--NPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred ---CCcCCCCEEEEEeCCCcC--CCccCCCCcccHHHHHHHHHhc
Confidence 88 99999999998421 35789996 9999999999875
No 12
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.2e-18 Score=185.12 Aligned_cols=211 Identities=17% Similarity=0.311 Sum_probs=154.3
Q ss_pred EEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccc
Q 005592 139 NVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (689)
Q Consensus 139 ~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gy 217 (689)
..++..+|...+ ....+|+|+||+|||+||+.+.|+|+++++.|++.+.+|.|||++++. +|++++ |+||
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~---~~~~y~------i~gf 102 (383)
T KOG0191|consen 32 SELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKD---LCEKYG------IQGF 102 (383)
T ss_pred hhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHH---HHHhcC------CccC
Confidence 344455565555 789999999999999999999999999999999988999999996554 899998 8899
Q ss_pred cEEEEcCCCCCCCCCccccccccCHHHHHHHHHHHhccCC-----c-ceecccchhhhhhhhhcCCCcEEEEEEeC---C
Q 005592 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLP-----R-IFYYTKESMGKNFLAKTGPHKVKVIFFSK---T 288 (689)
Q Consensus 218 PTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~v~~lP-----~-~~~it~~~~~~~Fl~~~~~~k~~Vl~f~~---~ 288 (689)
|||++|.+| . .+..|.|.++.+.+.+|+.+.+.... . ...++..+ ...+... .++.+.|.||.+ +
T Consensus 103 Ptl~~f~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~-~~~~~lv~f~aPwc~~ 176 (383)
T KOG0191|consen 103 PTLKVFRPG-K---KPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDN-FDETVKD-SDADWLVEFYAPWCGH 176 (383)
T ss_pred cEEEEEcCC-C---ceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccc-hhhhhhc-cCcceEEEEeccccHH
Confidence 999999999 3 47899999999999999988743221 1 11122222 2222222 233466666543 3
Q ss_pred CCCCcHHHHHHHHhcc--cCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHhcCCC
Q 005592 289 GERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQ 366 (689)
Q Consensus 289 ~~~~~~~~~~~A~~~~--~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~~k~~ 366 (689)
+....+.+..++..+. ..+.++.+... ....++++++|..+|++++|+++......|.|..+.+.|..|+....-.
T Consensus 177 ck~l~~~~~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 177 CKKLAPEWEKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred hhhcChHHHHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 3445677777777664 34444444321 2467999999999999999998766233467888999999999876544
No 13
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=8.2e-19 Score=184.33 Aligned_cols=70 Identities=34% Similarity=0.583 Sum_probs=67.1
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCChhhhhhhhccCCchhh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~~ 105 (689)
.+.+|+||||+++||.+|||+|||+||++||||||+.+.++|++|.+|||+|+||++|+.||+||+++..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~ 72 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQ 72 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence 4589999999999999999999999999999999999999999999999999999999999999988753
No 14
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.75 E-value=1.2e-18 Score=155.71 Aligned_cols=101 Identities=21% Similarity=0.452 Sum_probs=89.4
Q ss_pred eeEEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccc
Q 005592 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~ 215 (689)
.|..||.++|++.| +.+++++|.|||+||++|+++.|.|+++++.+.+.+.+++|||+++. .+|++++ |+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------i~ 72 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE---SLCQQAN------IR 72 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH---HHHHHcC------CC
Confidence 46789999999988 56779999999999999999999999999999888899999999654 4889988 88
Q ss_pred cccEEEEcCCCCCCCCCccccccccC-HHHHHHHH
Q 005592 216 GLPSLVAFPPGCKSSDCMTRFEGELS-VDAVTDWF 249 (689)
Q Consensus 216 gyPTL~~f~~g~~~~~~~~~Y~G~rs-~~~Iv~fv 249 (689)
++||+++|.+|.. ....|.|.++ .++|.+|+
T Consensus 73 ~~Pt~~~~~~g~~---~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 73 AYPTIRLYPGNAS---KYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cccEEEEEcCCCC---CceEccCCCCCHHHHHhhC
Confidence 9999999999843 3678999987 99999885
No 15
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.75 E-value=1.3e-18 Score=156.92 Aligned_cols=101 Identities=20% Similarity=0.305 Sum_probs=89.3
Q ss_pred eeEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhc------ccceeeeecchhhhhhHHHhhCCCCc
Q 005592 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG------IANTGMVELGDIRLATHLAERKPIGQ 210 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~------~~~vg~Vdc~~~~~~~~L~~k~~~~~ 210 (689)
.|.+|+.++|+..++.+++++|.||||||++|+++.|.|+++|+.+++ .+.+++|||+++. .+|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~---~l~~~~~--- 75 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES---DIADRYR--- 75 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH---HHHHhCC---
Confidence 578999999999888888999999999999999999999999998753 3589999999654 4899988
Q ss_pred ccccccccEEEEcCCCCCCCCCccccccccCHHHHHHHH
Q 005592 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 211 ~f~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
|+++||+++|++|.. ....|.|.++.++|++|+
T Consensus 76 ---v~~~Ptl~~~~~g~~---~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 ---INKYPTLKLFRNGMM---MKREYRGQRSVEALAEFV 108 (108)
T ss_pred ---CCcCCEEEEEeCCcC---cceecCCCCCHHHHHhhC
Confidence 889999999999864 257899999999999985
No 16
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.70 E-value=1e-17 Score=148.23 Aligned_cols=102 Identities=17% Similarity=0.370 Sum_probs=92.8
Q ss_pred eEEecCCCCccccCC-CCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCccccccc
Q 005592 138 FNVVTSEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (689)
Q Consensus 138 V~~Lt~~nF~~~I~~-~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~g 216 (689)
|..+|.++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||++++. +|++++ |++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~~~------v~~ 71 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE---LCKKYG------VKS 71 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH---HHHHTT------CSS
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch---hhhccC------CCC
Confidence 578999999999964 9999999999999999999999999999998878999999996644 899998 889
Q ss_pred ccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 217 yPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
+||+++|.+|.. ...|.|.++.+.|.+|++++
T Consensus 72 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 72 VPTIIFFKNGKE----VKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp SSEEEEEETTEE----EEEEESSSSHHHHHHHHHHH
T ss_pred CCEEEEEECCcE----EEEEECCCCHHHHHHHHHcC
Confidence 999999999975 45899999999999999864
No 17
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.69 E-value=2.7e-17 Score=147.98 Aligned_cols=105 Identities=20% Similarity=0.391 Sum_probs=90.0
Q ss_pred eEEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCccccccc
Q 005592 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (689)
Q Consensus 138 V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~g 216 (689)
|..|+.++|+..| +.+.+++|.||||||++|+++.|.|+++|+.+.+.+.++.|||+++. ...+|++++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~------i~~ 74 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYG------VQG 74 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcC------CCc
Confidence 6789999999998 56788999999999999999999999999999887899999999621 234889888 889
Q ss_pred ccEEEEcCCCCCC-CCCccccccccCHHHHHHHH
Q 005592 217 LPSLVAFPPGCKS-SDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 217 yPTL~~f~~g~~~-~~~~~~Y~G~rs~~~Iv~fv 249 (689)
+||+++|.+|... ......|.|.++.++|++|+
T Consensus 75 ~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 75 FPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 9999999998620 01357899999999999997
No 18
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.68 E-value=4.5e-17 Score=144.81 Aligned_cols=98 Identities=17% Similarity=0.378 Sum_probs=85.5
Q ss_pred eeEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhCCCCcccccc
Q 005592 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~ 215 (689)
.|..||.++|++++.. .|||.||||||++|+.+.|.|+++++.+++. +.+++|||+++.. +|++++ |+
T Consensus 2 ~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~---~~~~~~------i~ 70 (101)
T cd02994 2 NVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG---LSGRFF------VT 70 (101)
T ss_pred ceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh---HHHHcC------Cc
Confidence 4789999999988854 3899999999999999999999999988654 6999999996554 888888 88
Q ss_pred cccEEEEcCCCCCCCCCccccccccCHHHHHHHHH
Q 005592 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250 (689)
Q Consensus 216 gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~ 250 (689)
++||+++|++|. ...|.|.++.++|++|+.
T Consensus 71 ~~Pt~~~~~~g~-----~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 71 ALPTIYHAKDGV-----FRRYQGPRDKEDLISFIE 100 (101)
T ss_pred ccCEEEEeCCCC-----EEEecCCCCHHHHHHHHh
Confidence 999999998884 357899999999999985
No 19
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=4.5e-17 Score=177.68 Aligned_cols=69 Identities=28% Similarity=0.428 Sum_probs=64.1
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|||+||||+++||.+|||+|||+||++||||+|+ .++++|++|++||++|+||++|+.||+||..+.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~ 73 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccccc
Confidence 369999999999999999999999999999999986 267889999999999999999999999998754
No 20
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.67 E-value=5.8e-17 Score=146.64 Aligned_cols=102 Identities=14% Similarity=0.316 Sum_probs=86.8
Q ss_pred eeEEecCCCCccccC---CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhh-CCCCcc
Q 005592 137 AFNVVTSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAER-KPIGQI 211 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I~---~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k-~~~~~~ 211 (689)
.|.+++.++|+.++. +++++||.||+|||++|+++.|.|.++|+.+++. +.+++|||+.+ ...+|.+ ++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~---- 75 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQ---- 75 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcC----
Confidence 478999999999883 5789999999999999999999999999999875 68999999952 1236764 66
Q ss_pred cccccccEEEEcCCCCCCCCCccccccc-cCHHHHHHHH
Q 005592 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF 249 (689)
Q Consensus 212 f~V~gyPTL~~f~~g~~~~~~~~~Y~G~-rs~~~Iv~fv 249 (689)
|+++||+++|.+|.. ....|.|. |+.++|+.|+
T Consensus 76 --v~~~Pti~~f~~~~~---~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 76 --LKSFPTILFFPKNSR---QPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred --CCcCCEEEEEcCCCC---CceeccCCCCCHHHHHhhC
Confidence 889999999998865 36789995 9999999985
No 21
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.66 E-value=1.1e-16 Score=142.31 Aligned_cols=100 Identities=23% Similarity=0.434 Sum_probs=89.1
Q ss_pred eEEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCccccccc
Q 005592 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (689)
Q Consensus 138 V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~g 216 (689)
|..++.++|++.+ +.+.+++|.||++||++|+++.|.|.++++.+.+.+.++.+||+++.. +|++++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~------i~~ 72 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS---LAQQYG------VRG 72 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH---HHHHCC------CCc
Confidence 6789999999988 556679999999999999999999999999998888999999996544 888888 889
Q ss_pred ccEEEEcCCCCCCCCCccccccccCHHHHHHHH
Q 005592 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 217 yPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
+||+++|.+|.. ....|.|.++.++|++|+
T Consensus 73 ~P~~~~~~~~~~---~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 73 FPTIKVFGAGKN---SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred cCEEEEECCCCc---ceeecCCCCCHHHHHHHh
Confidence 999999998843 367899999999999997
No 22
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.66 E-value=1.6e-16 Score=145.88 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=86.9
Q ss_pred eeEEecCCCCcccc-CCCCCEEEEEEcCCCc--CCc--CchHHHHHHHHHH--hcccceeeeecchhhhhhHHHhhCCCC
Q 005592 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSY--LCG--QFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIG 209 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~--~Ck--~l~p~w~~~A~~L--~~~~~vg~Vdc~~~~~~~~L~~k~~~~ 209 (689)
.|..||.+||++.| +++.+++|.|+++||+ ||+ .++|...++|.++ ++.++|++|||++++. ||++++
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~---La~~~~-- 84 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK---VAKKLG-- 84 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH---HHHHcC--
Confidence 57999999999999 5666777788888886 599 7888888888777 6667999999996654 999999
Q ss_pred cccccccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 210 ~~f~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
|+++|||++|++|.. ..|.|.++.+.|++|+.+.
T Consensus 85 ----I~~iPTl~lfk~G~~-----v~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 85 ----LDEEDSIYVFKDDEV-----IEYDGEFAADTLVEFLLDL 118 (120)
T ss_pred ----CccccEEEEEECCEE-----EEeeCCCCHHHHHHHHHHH
Confidence 889999999999964 3599999999999999865
No 23
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=9.8e-17 Score=175.13 Aligned_cols=69 Identities=20% Similarity=0.418 Sum_probs=64.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|||++|||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+||++|+.||+||..+.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~ 73 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAF 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhh
Confidence 369999999999999999999999999999999985 477899999999999999999999999998653
No 24
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.6e-16 Score=174.95 Aligned_cols=104 Identities=16% Similarity=0.343 Sum_probs=90.9
Q ss_pred ceeEEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc--cceeeeecchhhhhhHHHhhCCCCccc
Q 005592 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLATHLAERKPIGQIF 212 (689)
Q Consensus 136 ~~V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~--~~vg~Vdc~~~~~~~~L~~k~~~~~~f 212 (689)
+.|.+|..+||+.++ +..+-+||+|||||||||++++|+|+++|+.+++. +.||++|.+.|.. ....
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~-----~~~~----- 435 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV-----PSLK----- 435 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC-----cccc-----
Confidence 358999999999999 78899999999999999999999999999999875 4899999995543 1122
Q ss_pred ccccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 213 ~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
|.+||||++|+.|.+. .+..|.|+|+.+++..|+.+.
T Consensus 436 -~~~fPTI~~~pag~k~--~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 436 -VDGFPTILFFPAGHKS--NPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred -ccccceEEEecCCCCC--CCcccCCCcchHHHHhhhccC
Confidence 7799999999999864 688999999999999998766
No 25
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.64 E-value=3e-16 Score=139.42 Aligned_cols=100 Identities=19% Similarity=0.396 Sum_probs=86.6
Q ss_pred eEEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhc--ccceeeeecchhhhhhHHHhhCCCCccccc
Q 005592 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFR 214 (689)
Q Consensus 138 V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~--~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V 214 (689)
|..||.++|++.+ +.+++++|.||+|||++|+.+.|.|+++++.+++ .+.+++|||+++ .+|..++ +
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~------~ 71 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFV------V 71 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhcc------C
Confidence 6789999999998 5568999999999999999999999999999987 368999999954 2566666 7
Q ss_pred ccccEEEEcCCCCCCCCCccccccccCHHHHHHHH
Q 005592 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 215 ~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
.++||+++|++|... ....|.|.++.++|++|+
T Consensus 72 ~~~Pt~~~~~~~~~~--~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 72 DGFPTILFFPAGDKS--NPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCCEEEEEcCCCcC--CceEccCCcCHHHHHhhC
Confidence 899999999998731 357899999999999985
No 26
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.63 E-value=2.3e-16 Score=139.92 Aligned_cols=98 Identities=17% Similarity=0.413 Sum_probs=85.7
Q ss_pred eEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhc---ccceeeeecchhhhhhHHHhhCCCCccccc
Q 005592 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFR 214 (689)
Q Consensus 138 V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~---~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V 214 (689)
|..||.++|+..+.++ +++|.|||+||++|+.+.|.|+++++.+++ .+.+++|||+++. .+|++++ |
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------v 71 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR---ELCSEFQ------V 71 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh---hhHhhcC------C
Confidence 5789999999999654 599999999999999999999999999987 5699999999554 4888888 8
Q ss_pred ccccEEEEcCCCCCCCCCccccccccCHHHHHHHH
Q 005592 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 215 ~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
.++||+++|++|.. ...|.|.++.++|.+|+
T Consensus 72 ~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 72 RGYPTLLLFKDGEK----VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CcCCEEEEEeCCCe----eeEeeCCCCHHHHHhhC
Confidence 89999999988863 46799999999999884
No 27
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=6.9e-16 Score=169.11 Aligned_cols=223 Identities=15% Similarity=0.202 Sum_probs=141.0
Q ss_pred eeEEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhc---ccceeeeecchhhhhhHHHhhCCCCccc
Q 005592 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIF 212 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~---~~~vg~Vdc~~~~~~~~L~~k~~~~~~f 212 (689)
.|+.|+..+|+..| .+.+.+||+||++|||||++|+|+|+++|+.+++ ++.|++|||.+..... ||++++
T Consensus 40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~-lCRef~----- 113 (606)
T KOG1731|consen 40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVK-LCREFS----- 113 (606)
T ss_pred CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhh-hHhhcC-----
Confidence 58999999999999 5667999999999999999999999999999975 4699999999654433 999988
Q ss_pred ccccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHHhc---------cCCcceecccchhhhhhhhh--cCCCcEE
Q 005592 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL---------KLPRIFYYTKESMGKNFLAK--TGPHKVK 281 (689)
Q Consensus 213 ~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~v~---------~lP~~~~it~~~~~~~Fl~~--~~~~k~~ 281 (689)
|++||||++|+++.........+.|+-...+|.+.+.+.+. .-|....+++.+.+.+.-++ ...+.+
T Consensus 114 -V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yv- 191 (606)
T KOG1731|consen 114 -VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYV- 191 (606)
T ss_pred -CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhccccccccee-
Confidence 89999999999874421234566787778888888876542 12332233332212221111 112344
Q ss_pred EEEEeCCCCCCcHHHHHHHHhcc--cCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCC---CChHHH
Q 005592 282 VIFFSKTGERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS---FNNSRL 356 (689)
Q Consensus 282 Vl~f~~~~~~~~~~~~~~A~~~~--~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~---~~~~~L 356 (689)
.++|.... ..+....+..+- ..+....+. +.....+.+ +++...|..++|+.+...++.-.+. .-.+.|
T Consensus 192 Aiv~e~~~---s~lg~~~~l~~l~~~~v~vr~~~--d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I 265 (606)
T KOG1731|consen 192 AIVFETEP---SDLGWANLLNDLPSKQVGVRARL--DTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKI 265 (606)
T ss_pred EEEEecCC---cccHHHHHHhhccCCCcceEEEe--cchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHH
Confidence 45554321 222222222221 223333332 222233444 7777899999999887776533222 223566
Q ss_pred HHHHHhc---CCCCCccccc
Q 005592 357 SEVMEQN---KLQELPQLRS 373 (689)
Q Consensus 357 ~~fI~~~---k~~~lp~lts 373 (689)
.++|... ..|+++..+.
T Consensus 266 ~~~lg~~~~a~~pt~~p~~~ 285 (606)
T KOG1731|consen 266 DDLLGDKNEASGPTLHPITA 285 (606)
T ss_pred HHHhcCccccCCCCcCcccc
Confidence 7776433 4466665554
No 28
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.62 E-value=3e-16 Score=142.60 Aligned_cols=100 Identities=22% Similarity=0.372 Sum_probs=85.5
Q ss_pred EEecCCCCcccc-C--CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhCCCCccccc
Q 005592 139 NVVTSEDFPSIF-H--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR 214 (689)
Q Consensus 139 ~~Lt~~nF~~~I-~--~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V 214 (689)
..++.++|.+.+ . .+++|+|.||||||++|+.+.|.|+++++.+.+. +.+++|||++++ .+|++++ |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~---~l~~~~~------V 77 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER---RLARKLG------A 77 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH---HHHHHcC------C
Confidence 567888897655 3 6799999999999999999999999999999864 689999999554 4888888 8
Q ss_pred ccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHH
Q 005592 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (689)
Q Consensus 215 ~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k 251 (689)
+++||+++|.+|.. ...+.|.++.+.|++|+.+
T Consensus 78 ~~~Pt~~i~~~g~~----~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 78 HSVPAIVGIINGQV----TFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ccCCEEEEEECCEE----EEEecCCCCHHHHHHHHhc
Confidence 89999999998853 4556899999999999865
No 29
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.62 E-value=2.6e-16 Score=159.59 Aligned_cols=104 Identities=21% Similarity=0.445 Sum_probs=91.0
Q ss_pred ceeEEecCCCCccccC-----CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCc
Q 005592 136 HAFNVVTSEDFPSIFH-----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQ 210 (689)
Q Consensus 136 ~~V~~Lt~~nF~~~I~-----~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~ 210 (689)
+.|.+||.+||++.+. ..++|+|.||||||++|+++.|+|+++|+++++.+.+++|||+++. .+|++++
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~---~l~~~~~--- 103 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL---NLAKRFA--- 103 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH---HHHHHcC---
Confidence 4689999999999883 2589999999999999999999999999999988899999999654 4889988
Q ss_pred ccccccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 211 ~f~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
|++|||+++|.+|.. ...+.|.++.++|.+|+.+.
T Consensus 104 ---I~~~PTl~~f~~G~~----v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 104 ---IKGYPTLLLFDKGKM----YQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred ---CCcCCEEEEEECCEE----EEeeCCCCCHHHHHHHHHHH
Confidence 889999999998853 23346889999999999876
No 30
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.62 E-value=3.3e-16 Score=172.81 Aligned_cols=68 Identities=28% Similarity=0.488 Sum_probs=64.0
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|||+||||+++||.+|||+|||+||++||||+|+ +.++|++|++||++|+||++|+.||+||..+.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~ 94 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-DPEKFKEISRAYEVLSDPEKRKIYDEYGEEGL 94 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHHHhccHHHHHHHhhhcchhc
Confidence 469999999999999999999999999999999986 57899999999999999999999999998754
No 31
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=4.5e-16 Score=171.05 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=62.8
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHHHHcCChhhhhhhhccCCc
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~ 102 (689)
..|||+||||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 469999999999999999999999999999999987 3568899999999999999999999999864
No 32
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=5.8e-16 Score=169.20 Aligned_cols=68 Identities=32% Similarity=0.544 Sum_probs=63.8
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
.|||++|||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+||.+|+.||+||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGV 74 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhh
Confidence 59999999999999999999999999999999986 356899999999999999999999999998764
No 33
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=7.6e-16 Score=168.20 Aligned_cols=69 Identities=30% Similarity=0.582 Sum_probs=64.2
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|||++|||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+||++|+.||+||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~ 73 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDP 73 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccc
Confidence 359999999999999999999999999999999985 467889999999999999999999999998754
No 34
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.2e-15 Score=166.77 Aligned_cols=69 Identities=29% Similarity=0.508 Sum_probs=64.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|||+||||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+||++|+.||+||.++.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 74 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGI 74 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccc
Confidence 469999999999999999999999999999999985 467899999999999999999999999998753
No 35
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.4e-15 Score=166.79 Aligned_cols=68 Identities=32% Similarity=0.563 Sum_probs=64.1
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
.|||+||||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+||++|+.||+||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~ 73 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGA 73 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccc
Confidence 59999999999999999999999999999999886 467899999999999999999999999998764
No 36
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.7e-15 Score=144.77 Aligned_cols=95 Identities=22% Similarity=0.346 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CCccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHH
Q 005592 9 KVKAYWAPLILFGLGLFYQLVVLPR--SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYA 83 (689)
Q Consensus 9 ~~~~~~~~i~l~~~~~~~~~~~~~~--~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~i~~A 83 (689)
..|.+++-+.+++++++..-+.... ...-|||+||||+++++.+|||+|||+|++++||||++ +.++.|..|++|
T Consensus 69 ~~~~i~lv~~W~v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KA 148 (230)
T KOG0721|consen 69 TKRKVFLVVGWAVIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKA 148 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHH
Confidence 3444444444444444433222211 11469999999999999999999999999999999975 467789999999
Q ss_pred HHHcCChhhhhhhhccCCch
Q 005592 84 YELLTDPLWKRNYDVYGIDE 103 (689)
Q Consensus 84 yevL~d~~~R~~YD~~g~~~ 103 (689)
|+.|+|+..|++|..||..+
T Consensus 149 Y~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 149 YQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HHHhcchhhHHHHHHhCCCC
Confidence 99999999999999999765
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.58 E-value=2.8e-15 Score=132.53 Aligned_cols=99 Identities=23% Similarity=0.389 Sum_probs=88.1
Q ss_pred ecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhc--ccceeeeecchhhhhhHHHhhCCCCccccccccc
Q 005592 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFRRGLP 218 (689)
Q Consensus 141 Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~--~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyP 218 (689)
|+.++|++.+.++++++|.||++||++|+++.|.|+++|+.+++ .+.++.+||+++.. +|++++ |+++|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~~------i~~~P 71 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD---LASRFG------VSGFP 71 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH---HHHhCC------CCcCC
Confidence 56788998888899999999999999999999999999999987 57999999996544 889988 88999
Q ss_pred EEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 219 TL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
++++|.+|.. ...|.|.++.+.|..|+.++
T Consensus 72 ~~~~~~~~~~----~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 72 TIKFFPKGKK----PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred EEEEecCCCc----ceeecCCCCHHHHHHHHHhc
Confidence 9999999863 46899999999999999764
No 38
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.7e-15 Score=165.60 Aligned_cols=69 Identities=29% Similarity=0.583 Sum_probs=63.6
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC----cHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|||+||||+++|+.+|||+|||+||++||||+|+. ++++|++|++||++|+||++|+.||+||..+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 3699999999999999999999999999999999863 46789999999999999999999999997653
No 39
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.58 E-value=1.6e-15 Score=135.35 Aligned_cols=84 Identities=13% Similarity=0.275 Sum_probs=73.7
Q ss_pred CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecc-hhhhhhHHHhhCCCCcccccccccEEEEcCCCCCC
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKS 229 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~-~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~ 229 (689)
..+++++|.||||||++|+.+.|.|+++++.+.+ +.+++||++ ++. .+|++++ |+++||+++|.+| .
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~---~l~~~~~------V~~~PT~~lf~~g-~- 83 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKP---SLLSRYG------VVGFPTILLFNST-P- 83 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCH---HHHHhcC------CeecCEEEEEcCC-c-
Confidence 3688999999999999999999999999999865 578889987 444 3888888 8899999999988 3
Q ss_pred CCCccccccccCHHHHHHHH
Q 005592 230 SDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 230 ~~~~~~Y~G~rs~~~Iv~fv 249 (689)
...|.|.++.++|++|+
T Consensus 84 ---~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 ---RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred ---eeEecCCCCHHHHHhhC
Confidence 46899999999999985
No 40
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.5e-15 Score=166.45 Aligned_cols=69 Identities=25% Similarity=0.467 Sum_probs=64.6
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|.+|++||++|+|+.+|+.||+||.++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 469999999999999999999999999999999985 577899999999999999999999999998754
No 41
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.57 E-value=3.7e-15 Score=132.45 Aligned_cols=101 Identities=20% Similarity=0.383 Sum_probs=86.8
Q ss_pred eEEecCCCCccccC-CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHh--cccceeeeecchhhhhhHHHhhCCCCccccc
Q 005592 138 FNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (689)
Q Consensus 138 V~~Lt~~nF~~~I~-~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~--~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V 214 (689)
|..|+.++|+..+. .+++++|.||++||++|+++.|.|+++++.++ +.+.++.+||..+ ...+|++++ |
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~------i 73 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYG------V 73 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCC------C
Confidence 57889999999884 56699999999999999999999999999997 3468999999961 334889988 8
Q ss_pred ccccEEEEcCCCCCCCCCccccccccCHHHHHHHH
Q 005592 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 215 ~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
+++||+++|.+|.. ....|.|.++.+.|.+|+
T Consensus 74 ~~~P~~~~~~~~~~---~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 74 SGFPTLKFFPKGST---EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCcCEEEEEeCCCC---CccccCCccCHHHHHhhC
Confidence 89999999998853 357899999999999985
No 42
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=1.8e-15 Score=164.99 Aligned_cols=68 Identities=26% Similarity=0.435 Sum_probs=63.5
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
.|||++|||+++||.+|||+|||+|+++||||+|+. ++++|++|++||++|+|+.+|+.||+||..+.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~ 73 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAF 73 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchh
Confidence 599999999999999999999999999999999863 56789999999999999999999999998754
No 43
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.57 E-value=2.9e-15 Score=131.73 Aligned_cols=93 Identities=14% Similarity=0.267 Sum_probs=80.8
Q ss_pred CCCcccc-CC-CCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEE
Q 005592 144 EDFPSIF-HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (689)
Q Consensus 144 ~nF~~~I-~~-~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~ 221 (689)
++|++.| ++ +++++|.||+|||++|+.+.|.|++++..+.+.+.+++|||+++. .+|++++ |.++||++
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~------i~~~Pt~~ 71 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP---QIAQQFG------VQALPTVY 71 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH---HHHHHcC------CCCCCEEE
Confidence 3677777 44 679999999999999999999999999999877789999999554 4899988 88999999
Q ss_pred EcCCCCCCCCCccccccccCHHHHHHHH
Q 005592 222 AFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
+|.+|.. ...|.|.++.+.|.+|+
T Consensus 72 ~~~~g~~----~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 72 LFAAGQP----VDGFQGAQPEEQLRQML 95 (96)
T ss_pred EEeCCEE----eeeecCCCCHHHHHHHh
Confidence 9998754 35689999999999886
No 44
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.57 E-value=2.5e-15 Score=133.56 Aligned_cols=101 Identities=21% Similarity=0.347 Sum_probs=87.4
Q ss_pred eEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHh--cccceeeeecchhhhhhHHHhhCCCCcccccc
Q 005592 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (689)
Q Consensus 138 V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~--~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~ 215 (689)
|..|+..+|+..+.++++++|.||++||++|+++.|.+.++++.+. +.+.++.|||++. ....+|++++ |+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~------i~ 74 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYN------VK 74 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCC------Cc
Confidence 5788999999999777899999999999999999999999999987 5568999999952 1334888888 88
Q ss_pred cccEEEEcCCCCCCCCCccccccccCHHHHHHHH
Q 005592 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 216 gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
++||+++|++|.. ...|.|..+.+.|++|+
T Consensus 75 ~~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 75 GFPTFKYFENGKF----VEKYEGERTAEDIIEFM 104 (104)
T ss_pred cccEEEEEeCCCe----eEEeCCCCCHHHHHhhC
Confidence 9999999998864 46789999999999885
No 45
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.3e-15 Score=164.88 Aligned_cols=66 Identities=29% Similarity=0.430 Sum_probs=62.5
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC--cHHHHHHHHHHHHHcCChhhhhhhhccCCc
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGID 102 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~i~~AyevL~d~~~R~~YD~~g~~ 102 (689)
.|||+||||+++|+.+|||+|||+||++||||+|+. ++++|++|++||++|+||++|+.||+||..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 599999999999999999999999999999999874 567899999999999999999999999975
No 46
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.2e-15 Score=159.50 Aligned_cols=67 Identities=30% Similarity=0.559 Sum_probs=63.4
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCch
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~ 103 (689)
.|||+||||+++||.+|||+|||+||++||||+|+ .++++|++|++||++|+|+.+|+.||+||..+
T Consensus 4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 59999999999999999999999999999999985 46789999999999999999999999999875
No 47
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2.5e-15 Score=164.52 Aligned_cols=68 Identities=29% Similarity=0.518 Sum_probs=64.0
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
.|||+||||+++|+.+|||+|||+|+++||||+|+ .++++|++|++||++|+||.+|+.||+||.++.
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 73 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGP 73 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcccc
Confidence 59999999999999999999999999999999885 577899999999999999999999999998764
No 48
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2.7e-15 Score=164.55 Aligned_cols=69 Identities=26% Similarity=0.516 Sum_probs=64.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|||++|||+++|+.++||+|||+||++||||+|+ .++++|++|++||++|+||.+|+.||+||..+.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 469999999999999999999999999999999986 467899999999999999999999999998653
No 49
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2.6e-15 Score=164.93 Aligned_cols=68 Identities=28% Similarity=0.552 Sum_probs=63.5
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
.|||+||||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+|+.+|+.||+||.++.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~ 75 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAF 75 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccc
Confidence 59999999999999999999999999999999986 356789999999999999999999999998754
No 50
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=2.7e-15 Score=163.83 Aligned_cols=69 Identities=29% Similarity=0.487 Sum_probs=64.1
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|||+||||+++|+.+|||+|||+||++||||+|+. ++++|.+|++||++|+||.+|+.||+||.++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~ 74 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGL 74 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccc
Confidence 4699999999999999999999999999999999863 56789999999999999999999999998764
No 51
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.7e-15 Score=140.23 Aligned_cols=103 Identities=18% Similarity=0.296 Sum_probs=92.8
Q ss_pred eeEEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccc
Q 005592 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~ 215 (689)
.+..++..+|++.| +++.|++|.|||+||+.|+.+.|..++++.+++|.+++++||.+++. +|+.+|+ |+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~---ela~~Y~------I~ 114 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP---ELAEDYE------IS 114 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc---chHhhcc------ee
Confidence 35677888998888 89999999999999999999999999999999999999999999554 4999988 88
Q ss_pred cccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 216 gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
.+||+++|++|.+ ...+.|..+.+.|.+|+.+.
T Consensus 115 avPtvlvfknGe~----~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 115 AVPTVLVFKNGEK----VDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred eeeEEEEEECCEE----eeeecccCCHHHHHHHHHHH
Confidence 9999999999975 35678999999999999887
No 52
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.6e-15 Score=151.33 Aligned_cols=70 Identities=30% Similarity=0.501 Sum_probs=64.9
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhccCCchhh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~~ 105 (689)
..|+|+|||++++|+.++||||||+|+++||||++++ +.++|++||+||++|+||.+|..||.||+.+..
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 4579999999999999999999999999999998763 788999999999999999999999999988754
No 53
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9.3e-16 Score=163.64 Aligned_cols=68 Identities=26% Similarity=0.438 Sum_probs=62.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC----CcHHHHHHHHHHHHHcCChhhhhhhhccCCch
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~----~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~ 103 (689)
...||+||||.++|+..+||++||+||++||||+|| .+.++|+.|+.||+|||||..|+.||.+..+-
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqi 78 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQI 78 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHH
Confidence 458999999999999999999999999999999988 36778999999999999999999999887643
No 54
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.2e-15 Score=164.04 Aligned_cols=68 Identities=28% Similarity=0.553 Sum_probs=63.7
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
.|||++|||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+||.+|+.||+||..+.
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~ 74 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADF 74 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccc
Confidence 59999999999999999999999999999999986 356789999999999999999999999998764
No 55
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.3e-15 Score=163.28 Aligned_cols=69 Identities=25% Similarity=0.450 Sum_probs=63.9
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|||++|||+++|+.++||+|||+||++||||+|+. ++++|++|++||++|+||.+|+.||+||..+.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~ 74 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGV 74 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccccc
Confidence 3699999999999999999999999999999999863 56789999999999999999999999998754
No 56
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.55 E-value=3.9e-15 Score=121.57 Aligned_cols=60 Identities=35% Similarity=0.697 Sum_probs=56.7
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCCcH----HHHHHHHHHHHHcCChhhhhhhh
Q 005592 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRNYD 97 (689)
Q Consensus 38 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~----~~f~~i~~AyevL~d~~~R~~YD 97 (689)
|||+||||+++++.++||++|+++++++|||++++.. +.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999977544 78999999999999999999998
No 57
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.7e-15 Score=163.99 Aligned_cols=68 Identities=31% Similarity=0.539 Sum_probs=63.2
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
.|||+||||+++|+.+|||+|||+||++||||+|+. ++++|++|++||++|+|+++|+.||+||.++.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 389999999999999999999999999999999863 56789999999999999999999999998653
No 58
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.55 E-value=4.2e-15 Score=164.85 Aligned_cols=104 Identities=12% Similarity=0.302 Sum_probs=89.4
Q ss_pred eeEEecCCCCccccC---CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHH-HhhCCCCcc
Q 005592 137 AFNVVTSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHL-AERKPIGQI 211 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I~---~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L-~~k~~~~~~ 211 (689)
.|+.||.+||+++|. .++++||.||||||++|+.+.|.|+++|+++.+. +.|++|||+.+.. .+ +++++
T Consensus 352 ~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~---- 425 (463)
T TIGR00424 352 NVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQ---- 425 (463)
T ss_pred CeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcC----
Confidence 589999999999984 7889999999999999999999999999999875 6899999995532 24 46777
Q ss_pred cccccccEEEEcCCCCCCCCCccccc-cccCHHHHHHHHHH
Q 005592 212 FFRRGLPSLVAFPPGCKSSDCMTRFE-GELSVDAVTDWFAT 251 (689)
Q Consensus 212 f~V~gyPTL~~f~~g~~~~~~~~~Y~-G~rs~~~Iv~fv~k 251 (689)
|++||||++|++|.. .+..|. |.|++++|+.|++.
T Consensus 426 --I~~~PTii~Fk~g~~---~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 426 --LGSFPTILFFPKHSS---RPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred --CCccceEEEEECCCC---CceeCCCCCCCHHHHHHHHHh
Confidence 889999999999864 357897 58999999999864
No 59
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.54 E-value=9.5e-15 Score=133.44 Aligned_cols=102 Identities=25% Similarity=0.415 Sum_probs=83.1
Q ss_pred eEEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhc---ccceeeeecchhhhhhHHHhhCCCCcccc
Q 005592 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF 213 (689)
Q Consensus 138 V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~---~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~ 213 (689)
|.+|+.++|+..| +..++++|.||++||++|+.+.|.|+++++.+++ .+.++.|||+.+. ...+|++++
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~------ 75 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFG------ 75 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCC------
Confidence 6889999999998 4567999999999999999999999999998864 4689999997432 234888888
Q ss_pred cccccEEEEcCCCCCCCCCccccccc-cCHHHHH
Q 005592 214 RRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVT 246 (689)
Q Consensus 214 V~gyPTL~~f~~g~~~~~~~~~Y~G~-rs~~~Iv 246 (689)
|+++||+++|++|.........|.|. |..+.+.
T Consensus 76 i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 76 VTGYPTLRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred CCCCCEEEEECCCCccCCCCCcccCCccCHHHHH
Confidence 88999999999987543334678886 7666653
No 60
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=5.6e-15 Score=162.26 Aligned_cols=69 Identities=23% Similarity=0.468 Sum_probs=63.6
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHHHHcCChhhhhhhhc----cCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDV----YGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~i~~AyevL~d~~~R~~YD~----~g~~~~ 104 (689)
..|||+||||+++|+.+|||+|||+||++||||+|+ .++++|++|++||++|+||.+|+.||+ ||..+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 359999999999999999999999999999999986 356889999999999999999999999 987653
No 61
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=5.9e-15 Score=162.63 Aligned_cols=68 Identities=25% Similarity=0.504 Sum_probs=63.5
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
.|||+||||+++|+.+|||+|||+||++||||+|+. ++++|++|++||++|+|+.+|+.||+||..+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~ 73 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGV 73 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhh
Confidence 599999999999999999999999999999999863 56889999999999999999999999998754
No 62
>PRK09381 trxA thioredoxin; Provisional
Probab=99.53 E-value=1.4e-14 Score=130.63 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=89.9
Q ss_pred eeEEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccc
Q 005592 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~ 215 (689)
.|..++.++|.+.+ +.+++++|.||+|||++|+.+.|.|+++++.+.+.+.++.|||+.+.. ++++++ |+
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~---~~~~~~------v~ 74 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG---TAPKYG------IR 74 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh---HHHhCC------CC
Confidence 47889999999866 678899999999999999999999999999998878999999995543 788887 88
Q ss_pred cccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 216 gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
++||+++|.+|.. ...+.|..+.+.|..|+...
T Consensus 75 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 75 GIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred cCCEEEEEeCCeE----EEEecCCCCHHHHHHHHHHh
Confidence 9999999998864 34678999999999998765
No 63
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=8.6e-15 Score=160.29 Aligned_cols=69 Identities=30% Similarity=0.554 Sum_probs=63.8
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|||+||||+++|+.+|||+|||+||++||||+|+. +.++|.+|++||++|+|+.+|+.||+||..+.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~ 74 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAF 74 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccccc
Confidence 3699999999999999999999999999999999863 56789999999999999999999999998654
No 64
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1e-14 Score=149.88 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=93.9
Q ss_pred eeEEecCCCCcccc--C-CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccc
Q 005592 137 AFNVVTSEDFPSIF--H-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I--~-~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~ 213 (689)
.|..+|..||...| . ...|+||.||+|||++|+++.|..++++.+++|.+.+++|||++++. ++.++|
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~---vAaqfg------ 94 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM---VAAQFG------ 94 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh---HHHHhC------
Confidence 47899999999888 3 45699999999999999999999999999999999999999996555 889988
Q ss_pred cccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 214 V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
|+++||+++|.+|.. ...|.|....+.|..|+.+.
T Consensus 95 iqsIPtV~af~dGqp----VdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 95 VQSIPTVYAFKDGQP----VDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred cCcCCeEEEeeCCcC----ccccCCCCcHHHHHHHHHHh
Confidence 889999999999974 57889999999999999988
No 65
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.52 E-value=8.5e-15 Score=128.08 Aligned_cols=98 Identities=22% Similarity=0.442 Sum_probs=85.6
Q ss_pred EecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHH--hcccceeeeecchhhhhhHHHhhCCCCcccccccc
Q 005592 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (689)
Q Consensus 140 ~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L--~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gy 217 (689)
.||.++|.+.+.+.++++|.||++||++|+.+.|.|+++++.+ ...+.++.|||+++. .+|++++ |+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~------i~~~ 72 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN---DLCSEYG------VRGY 72 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH---HHHHhCC------CCCC
Confidence 4778889999977779999999999999999999999999999 466799999999644 4889988 8899
Q ss_pred cEEEEcCCCCCCCCCccccccccCHHHHHHHH
Q 005592 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 218 PTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
||+++|.++.. ....|.|.++++.|.+|+
T Consensus 73 Pt~~~~~~~~~---~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 73 PTIKLFPNGSK---EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CEEEEEcCCCc---ccccCCCCcCHHHHHhhC
Confidence 99999998843 367899999999999884
No 66
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.52 E-value=2.7e-14 Score=127.92 Aligned_cols=94 Identities=16% Similarity=0.387 Sum_probs=79.2
Q ss_pred CCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhc---ccceeeeecchhhhhhHHHhhCCCCcccccccccEE
Q 005592 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (689)
Q Consensus 144 ~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~---~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL 220 (689)
++|+.. .+++++||.||++||++|+.+.|.|+++++.+++ .+.++.+||+++. .+|++++ |+++||+
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~---~~~~~~~------I~~~Pt~ 76 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS---SIASEFG------VRGYPTI 76 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH---hHHhhcC------CccccEE
Confidence 678764 4567999999999999999999999999999854 2588999999544 4888888 8899999
Q ss_pred EEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
++|.+|. ...|.|.++.+.|.+|+++.
T Consensus 77 ~l~~~~~-----~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 77 KLLKGDL-----AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EEEcCCC-----ceeecCCCCHHHHHHHHHhh
Confidence 9997653 35689999999999999764
No 67
>PLN02309 5'-adenylylsulfate reductase
Probab=99.51 E-value=1.1e-14 Score=161.52 Aligned_cols=104 Identities=14% Similarity=0.387 Sum_probs=90.1
Q ss_pred eeEEecCCCCcccc---CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecc-hhhhhhHHHh-hCCCCc
Q 005592 137 AFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG-DIRLATHLAE-RKPIGQ 210 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I---~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~-~~~~~~~L~~-k~~~~~ 210 (689)
.|..|+.+||++++ +.+++|||.||||||++|+.+.|.|+++|+.+.+. +.|++|||+ .+.. +|. +++
T Consensus 346 ~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~---la~~~~~--- 419 (457)
T PLN02309 346 NVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE---FAKQELQ--- 419 (457)
T ss_pred CcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH---HHHhhCC---
Confidence 58899999999887 47889999999999999999999999999999776 699999999 5443 675 467
Q ss_pred ccccccccEEEEcCCCCCCCCCcccccc-ccCHHHHHHHHHHH
Q 005592 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWFATA 252 (689)
Q Consensus 211 ~f~V~gyPTL~~f~~g~~~~~~~~~Y~G-~rs~~~Iv~fv~k~ 252 (689)
|++||||++|++|.. .+..|.| .|++++|++|++..
T Consensus 420 ---I~~~PTil~f~~g~~---~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 ---LGSFPTILLFPKNSS---RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ---CceeeEEEEEeCCCC---CeeecCCCCcCHHHHHHHHHHh
Confidence 889999999998865 3678985 79999999999763
No 68
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1e-14 Score=155.70 Aligned_cols=69 Identities=29% Similarity=0.484 Sum_probs=64.1
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC------CcHHHHHHHHHHHHHcCChhhhhhhhccCCchhh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI------PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~------~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~~ 105 (689)
.|||.+|||+++||.+|||+|||++++.|||||.. .+++.|+.|.+|||||+||.+|+.||.||..|+.
T Consensus 9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 38999999999999999999999999999999754 3567799999999999999999999999999875
No 69
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.50 E-value=4e-13 Score=136.39 Aligned_cols=188 Identities=11% Similarity=0.094 Sum_probs=123.8
Q ss_pred CCCEEEEEEc---CCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCC
Q 005592 153 SKPWLIQVYS---DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK 228 (689)
Q Consensus 153 ~~~~LV~FYa---pwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~ 228 (689)
+...++.|++ +||++|+.+.|.++++++.+... +.+..||.++++ .++++++ |.++||+++|.+|..
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~---~l~~~~~------V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK---EEAEKYG------VERVPTTIILEEGKD 89 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH---HHHHHcC------CCccCEEEEEeCCee
Confidence 3455777999 99999999999999999988543 345666665444 4899998 889999999999864
Q ss_pred CCCCccccccccCHHHHHHHHHHHhccCCcceecccchhhhhhhhhcCCCcEEEEEE-eCCC-CC--CcHHHHHHHHhcc
Q 005592 229 SSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFF-SKTG-ER--ASPFVRQISRNYW 304 (689)
Q Consensus 229 ~~~~~~~Y~G~rs~~~Iv~fv~k~v~~lP~~~~it~~~~~~~Fl~~~~~~k~~Vl~f-~~~~-~~--~~~~~~~~A~~~~ 304 (689)
....|.|..+.+.+.+|+...+..-+....++... .+.+ ... ++.+.|+.| ...+ .| ..+.+..++..+
T Consensus 90 ---~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~-~~~l-~~~-~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~- 162 (215)
T TIGR02187 90 ---GGIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKT-VELL-QSL-DEPVRIEVFVTPTCPYCPYAVLMAHKFALAN- 162 (215)
T ss_pred ---eEEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHH-HHHH-Hhc-CCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-
Confidence 23478899888999999886631111112232211 2222 222 223445544 3322 22 234445555542
Q ss_pred cCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHh
Q 005592 305 AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 305 ~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~ 362 (689)
..+.+..+... ..+++..+|+|.+.||+++++++. .+.|..+.+.|.+||..
T Consensus 163 ~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 163 DKILGEMIEAN--ENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred CceEEEEEeCC--CCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 34556555432 347899999999999999987542 26788788889888864
No 70
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=1.5e-14 Score=158.21 Aligned_cols=68 Identities=26% Similarity=0.462 Sum_probs=63.5
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
.|||+||||+++||.+|||+|||+|+++||||+++ .++++|.+|++||++|+|+.+|+.||+||.++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 72 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAF 72 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccccc
Confidence 59999999999999999999999999999999885 467799999999999999999999999998653
No 71
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.50 E-value=1.6e-14 Score=166.57 Aligned_cols=70 Identities=26% Similarity=0.409 Sum_probs=65.1
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCchhh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~~ 105 (689)
..+||++|||+++|+..+||+|||+||++||||+++ .+.++|++|++||++|+||.+|+.||.||..+..
T Consensus 572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 579999999999999999999999999999999987 3567899999999999999999999999988743
No 72
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=1.9e-14 Score=157.16 Aligned_cols=68 Identities=31% Similarity=0.557 Sum_probs=63.2
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC----cHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
.|||+||||+++|+.+|||+|||+|+++||||+|+. +.++|++|++||++|+|+.+|+.||.||..+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 599999999999999999999999999999999863 45789999999999999999999999998653
No 73
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.49 E-value=2e-14 Score=156.60 Aligned_cols=67 Identities=31% Similarity=0.566 Sum_probs=62.9
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 38 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
|||++|||+++|+.++||+|||+||++||||+|+ .+.++|++|++||++|+|+.+|+.||.||..+.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~ 69 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGF 69 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccccc
Confidence 7999999999999999999999999999999985 467899999999999999999999999998764
No 74
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2e-14 Score=151.22 Aligned_cols=68 Identities=28% Similarity=0.601 Sum_probs=63.5
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCch
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~ 103 (689)
..|||+||||+++|+..|||+||++|+++||||.|. .+.++|++|.+|||+|+|+++|..||.+|..+
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 349999999999999999999999999999999665 67889999999999999999999999999775
No 75
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.6e-14 Score=156.49 Aligned_cols=68 Identities=26% Similarity=0.515 Sum_probs=63.7
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
.|||+||||+++|+.+|||+|||+|+++||||+|+ .++++|.+|++||++|+||.+|+.||.||..+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~ 72 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGV 72 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccccc
Confidence 59999999999999999999999999999999886 477899999999999999999999999998653
No 76
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.5e-14 Score=156.66 Aligned_cols=67 Identities=27% Similarity=0.517 Sum_probs=63.2
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCch
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~ 103 (689)
.|||++|||+++|+.++||+|||+|+++||||+++ .+.++|.+|++||++|+||.+|+.||.||..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 49999999999999999999999999999999986 46788999999999999999999999999865
No 77
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.4e-14 Score=149.46 Aligned_cols=68 Identities=25% Similarity=0.401 Sum_probs=64.0
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCChhhhhhhhccCCch
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~ 103 (689)
..|||++|||+.+|+..+|++|||+.+++|||||||+ +.++|+.+.+||+||+|+..|..||.+|..+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 4599999999999999999999999999999999984 6788999999999999999999999999775
No 78
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=2.7e-14 Score=157.12 Aligned_cols=69 Identities=25% Similarity=0.495 Sum_probs=63.8
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~---~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||.+|+.||.||..+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 369999999999999999999999999999999986 356789999999999999999999999998653
No 79
>PHA02278 thioredoxin-like protein
Probab=99.47 E-value=2.6e-14 Score=128.12 Aligned_cols=96 Identities=9% Similarity=0.118 Sum_probs=79.1
Q ss_pred CCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhh-hhHHHhhCCCCcccccccccEEE
Q 005592 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (689)
Q Consensus 143 ~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~-~~~L~~k~~~~~~f~V~gyPTL~ 221 (689)
.++|...+.++++++|.||||||++|+.++|.++++++.+.+...+.+||++.++. ...++++++ |++.||++
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~------I~~iPT~i 77 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD------IMSTPVLI 77 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC------CccccEEE
Confidence 35677778888999999999999999999999999998876666899999995421 123888887 89999999
Q ss_pred EcCCCCCCCCCccccccccCHHHHHHH
Q 005592 222 AFPPGCKSSDCMTRFEGELSVDAVTDW 248 (689)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~rs~~~Iv~f 248 (689)
+|++|.. .....|..+.+.|.++
T Consensus 78 ~fk~G~~----v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQL----VKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEE----EEEEeCCCCHHHHHhh
Confidence 9999964 4567888888888765
No 80
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.46 E-value=4.2e-14 Score=150.91 Aligned_cols=66 Identities=24% Similarity=0.471 Sum_probs=62.1
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCc
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~ 102 (689)
.|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|.+|++||++|+|+.+|+.||.||..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~ 71 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQH 71 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 59999999999999999999999999999999885 5778999999999999999999999999854
No 81
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.6e-14 Score=138.93 Aligned_cols=68 Identities=24% Similarity=0.450 Sum_probs=62.9
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC-----CcHHHHHHHHHHHHHcCChhhhhhhhccCCch
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI-----PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~-----~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~ 103 (689)
..|+|+||||.++|+..+||+|||+|+++||||+++ .+.++|++++.||.||+|.++|+.||.-|.-.
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 569999999999999999999999999999999985 46778999999999999999999999988654
No 82
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=7.2e-14 Score=138.66 Aligned_cols=92 Identities=25% Similarity=0.306 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC--cHHHHHHHHHHHHHcC
Q 005592 11 KAYWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLT 88 (689)
Q Consensus 11 ~~~~~~i~l~~~~~~~~~~~~~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~f~~i~~AyevL~ 88 (689)
.++|+.+++++..++..++...-+...|+|+||||+++++..+|.+|||+||+++|||++++ ..+.|..|..||++|.
T Consensus 7 ~rw~Lvl~~Llp~l~vgl~egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilk 86 (329)
T KOG0722|consen 7 ERWCLVLILLLPSLFVGLSEGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILK 86 (329)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhccccccc
Confidence 66777777777777777776677778999999999999999999999999999999998764 4456999999999999
Q ss_pred ChhhhhhhhccCCc
Q 005592 89 DPLWKRNYDVYGID 102 (689)
Q Consensus 89 d~~~R~~YD~~g~~ 102 (689)
|.+.|..||-.-+-
T Consensus 87 d~e~rt~ydyaldh 100 (329)
T KOG0722|consen 87 DNETRTQYDYALDH 100 (329)
T ss_pred chhhHHhHHHHhcC
Confidence 99999999976543
No 83
>PRK10996 thioredoxin 2; Provisional
Probab=99.45 E-value=6.3e-14 Score=132.57 Aligned_cols=103 Identities=20% Similarity=0.334 Sum_probs=91.2
Q ss_pred eeEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCccccccc
Q 005592 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~g 216 (689)
.++.++.++|+..++++++++|.||++||++|+.+.|.++++++.+.+.+.+++||++++.. ++++++ |.+
T Consensus 36 ~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~---l~~~~~------V~~ 106 (139)
T PRK10996 36 EVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE---LSARFR------IRS 106 (139)
T ss_pred CCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH---HHHhcC------CCc
Confidence 46778999999988889999999999999999999999999999998888999999996544 888888 889
Q ss_pred ccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 217 yPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
+||+++|.+|.. ...+.|..+.+.|.+|+.+.
T Consensus 107 ~Ptlii~~~G~~----v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 107 IPTIMIFKNGQV----VDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred cCEEEEEECCEE----EEEEcCCCCHHHHHHHHHHh
Confidence 999999998864 45678999999999999765
No 84
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.44 E-value=8.4e-14 Score=124.75 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=77.7
Q ss_pred CCCCccccC--CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEE
Q 005592 143 SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (689)
Q Consensus 143 ~~nF~~~I~--~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL 220 (689)
.++|++.|. .+++++|.|||+||++|+.+.|.++++++++ +.+.++.||++++.....+|++++ |+++||+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~------V~~~Pt~ 75 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREK------IIEVPHF 75 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcC------CCcCCEE
Confidence 456777783 4889999999999999999999999999998 557899999997654446889988 8899999
Q ss_pred EEcCCCCCCCCCccccccccCHHHHHHHHH
Q 005592 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250 (689)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~ 250 (689)
++|++|.. ...+.|.. .+.|.+-+.
T Consensus 76 ~~~~~G~~----v~~~~G~~-~~~l~~~~~ 100 (103)
T cd02985 76 LFYKDGEK----IHEEEGIG-PDELIGDVL 100 (103)
T ss_pred EEEeCCeE----EEEEeCCC-HHHHHHHHH
Confidence 99998864 46677843 566665544
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.43 E-value=1.8e-13 Score=141.76 Aligned_cols=65 Identities=29% Similarity=0.514 Sum_probs=59.3
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC------CcHHHHHHHHHHHHHcCChhhhhhhhccC
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI------PSTADFLKIQYAYELLTDPLWKRNYDVYG 100 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~------~~~~~f~~i~~AyevL~d~~~R~~YD~~g 100 (689)
..|||+||||.++|+..||.||||++|.+||||.-+ .++.+|..|..|-|||+||++|+.||..-
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 679999999999999999999999999999999654 35567999999999999999999999753
No 86
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.42 E-value=1.5e-11 Score=120.53 Aligned_cols=151 Identities=18% Similarity=0.366 Sum_probs=116.2
Q ss_pred HHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCC-CChHHHHHHHHhcCCCCCcccc
Q 005592 294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVMEQNKLQELPQLR 372 (689)
Q Consensus 294 ~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~-~~~~~L~~fI~~~k~~~lp~lt 372 (689)
-.+..+|..+.+.+.|+.+. ..+++++++++. |+|++|++.+.+++.|.|. ++.+.|.+||..+++|++++++
T Consensus 10 ~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t 83 (184)
T PF13848_consen 10 EIFEEAAEKLKGDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELT 83 (184)
T ss_dssp HHHHHHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEES
T ss_pred HHHHHHHHhCcCCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccccc
Confidence 34566888888888888885 456999999987 9999999988888999998 8999999999999999999999
Q ss_pred ccchhhhccCccCccCCCCCCcccEEEEEecCC-chhHHHHHHHHHHHHHhhccccccccccccccchHHHHHcCCCcEE
Q 005592 373 SVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-SPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLT 451 (689)
Q Consensus 373 s~~~~~~~c~~~~~~~~~k~~~~~lCVIl~~~~-~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~k~~~l~ 451 (689)
..+... +.. .++ ..+++++.+. ....+...+.++.+|+ ++++ ++.
T Consensus 84 ~~n~~~-~~~------~~~----~~~~~~~~~~~~~~~~~~~~~l~~~a~----------------------~~~~-~~~ 129 (184)
T PF13848_consen 84 PENFEK-LFS------SPK----PPVLILFDNKDNESTEAFKKELQDIAK----------------------KFKG-KIN 129 (184)
T ss_dssp TTHHHH-HHS------TSS----EEEEEEEETTTHHHHHHHHHHHHHHHH----------------------CTTT-TSE
T ss_pred hhhHHH-Hhc------CCC----ceEEEEEEcCCchhHHHHHHHHHHHHH----------------------hcCC-eEE
Confidence 988654 331 111 3456666553 4456777777777766 5665 499
Q ss_pred EEEEeCcchHHHHHHhcccCCcccccCCcCCCCCCCeEEEEEeecCCCc
Q 005592 452 FAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTE 500 (689)
Q Consensus 452 F~wvd~~~q~~f~~~f~~~~~~~~~c~~~~~~~~~P~lvI~~~rrn~~~ 500 (689)
|+|+|++..+++++.|...+ .++|.++|+ +++.
T Consensus 130 f~~~d~~~~~~~~~~~~i~~------------~~~P~~vi~----~~~~ 162 (184)
T PF13848_consen 130 FVYVDADDFPRLLKYFGIDE------------DDLPALVIF----DSNK 162 (184)
T ss_dssp EEEEETTTTHHHHHHTTTTT------------SSSSEEEEE----ETTT
T ss_pred EEEeehHHhHHHHHHcCCCC------------ccCCEEEEE----ECCC
Confidence 99999998899999773332 257999999 7555
No 87
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.42 E-value=1.1e-13 Score=132.54 Aligned_cols=89 Identities=16% Similarity=0.370 Sum_probs=74.6
Q ss_pred eeEEecCCCCcccc--CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhCCCCcccc
Q 005592 137 AFNVVTSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFF 213 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I--~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~~~~~~f~ 213 (689)
.|..++.++|++.+ +...+|+|.||+|||++|+.+.|.|+++|+++.+. +.+++|||++++ .+|+++++...+.
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~---~la~~~~V~~~~~ 105 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP---NVAEKFRVSTSPL 105 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH---HHHHHcCceecCC
Confidence 57889999999988 34579999999999999999999999999998754 799999999665 4889988543344
Q ss_pred cccccEEEEcCCCCC
Q 005592 214 RRGLPSLVAFPPGCK 228 (689)
Q Consensus 214 V~gyPTL~~f~~g~~ 228 (689)
|+++||+++|++|..
T Consensus 106 v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 106 SKQLPTIILFQGGKE 120 (152)
T ss_pred cCCCCEEEEEECCEE
Confidence 455999999999864
No 88
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.41 E-value=2.8e-13 Score=119.14 Aligned_cols=99 Identities=19% Similarity=0.296 Sum_probs=84.2
Q ss_pred ecCCCCccccC-CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccE
Q 005592 141 VTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS 219 (689)
Q Consensus 141 Lt~~nF~~~I~-~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPT 219 (689)
++.++|...+. ..++++|.||++||++|+.+.|.++++++.+.+.+.++.|||+++.. ++++++ |.++||
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~---~~~~~~------v~~~P~ 71 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD---IAAKYG------IRSIPT 71 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH---HHHHcC------CCcCCE
Confidence 35567777774 46699999999999999999999999999998778999999996544 788888 889999
Q ss_pred EEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 220 L~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
+++|.+|.. ...+.|..+.+.|.+|+.+.
T Consensus 72 ~~~~~~g~~----~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 72 LLLFKNGKE----VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred EEEEeCCcE----eeeecCCCCHHHHHHHHHhh
Confidence 999988764 35678999999999999765
No 89
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.40 E-value=3.4e-13 Score=108.44 Aligned_cols=55 Identities=31% Similarity=0.585 Sum_probs=51.1
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC----cHHHHHHHHHHHHHcCChh
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPL 91 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~f~~i~~AyevL~d~~ 91 (689)
.|||++|||+++++.++||+||++|++++|||++++ +.+.|.+|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 389999999999999999999999999999999874 6778999999999999985
No 90
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.39 E-value=4.1e-13 Score=105.92 Aligned_cols=52 Identities=37% Similarity=0.636 Sum_probs=49.1
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC---cHHHHHHHHHHHHHcCC
Q 005592 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTD 89 (689)
Q Consensus 38 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~f~~i~~AyevL~d 89 (689)
|||++|||+++++.++||++||+|+++||||++++ +.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999875 67889999999999986
No 91
>PTZ00102 disulphide isomerase; Provisional
Probab=99.39 E-value=3.8e-13 Score=152.08 Aligned_cols=105 Identities=14% Similarity=0.249 Sum_probs=92.3
Q ss_pred ceeEEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhc--ccceeeeecchhhhhhHHHhhCCCCccc
Q 005592 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIF 212 (689)
Q Consensus 136 ~~V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~--~~~vg~Vdc~~~~~~~~L~~k~~~~~~f 212 (689)
..|..|+.++|++.| ++++++||.||||||+||+.+.|.|+++|+.+.. .+.++.|||+.+.. +|++++
T Consensus 357 ~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~---~~~~~~----- 428 (477)
T PTZ00102 357 GPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANET---PLEEFS----- 428 (477)
T ss_pred CCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCcc---chhcCC-----
Confidence 358899999999987 7889999999999999999999999999999865 35899999996554 677777
Q ss_pred ccccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 213 ~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
|+++||+++|++|.. .+..|.|.++.++|.+|+.+.
T Consensus 429 -v~~~Pt~~~~~~~~~---~~~~~~G~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 429 -WSAFPTILFVKAGER---TPIPYEGERTVEGFKEFVNKH 464 (477)
T ss_pred -CcccCeEEEEECCCc---ceeEecCcCCHHHHHHHHHHc
Confidence 889999999998865 356899999999999999987
No 92
>PHA03102 Small T antigen; Reviewed
Probab=99.39 E-value=2.9e-13 Score=128.45 Aligned_cols=67 Identities=10% Similarity=0.134 Sum_probs=62.4
Q ss_pred cCcccccCcCCCC--CHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 37 PSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 37 ~d~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
...|++|||+++| |.++||+|||++++++|||++ ++.++|++|++||++|+|+..|..||.+|.++.
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg-g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~ 73 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG-GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-chhHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence 3578999999999 999999999999999999997 567899999999999999999999999998763
No 93
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.38 E-value=3.4e-13 Score=120.53 Aligned_cols=96 Identities=13% Similarity=0.178 Sum_probs=78.2
Q ss_pred ecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhCCCCcccccccccE
Q 005592 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS 219 (689)
Q Consensus 141 Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPT 219 (689)
-|.++|+..++++++++|.|||+||++|+.+.|.++++++.+.+. +.++.||++ +. .++++++ |+++||
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~---~~~~~~~------v~~~Pt 74 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI---DTLKRYR------GKCEPT 74 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH---HHHHHcC------CCcCcE
Confidence 456788888888899999999999999999999999999998754 589999998 32 3788888 889999
Q ss_pred EEEcCCCCCCCCCccccccccCHHHHHHHHHH
Q 005592 220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (689)
Q Consensus 220 L~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k 251 (689)
+++|.+|.. .....| .+.+.|.+++.+
T Consensus 75 ~~~~~~g~~----~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 75 FLFYKNGEL----VAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEECCEE----EEEEec-CChHHHHHHHhh
Confidence 999998864 233455 477888777653
No 94
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.37 E-value=1.4e-13 Score=124.80 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=67.2
Q ss_pred CCCccccC--CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEE
Q 005592 144 EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (689)
Q Consensus 144 ~nF~~~I~--~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~ 221 (689)
++|+..+. .+++++|.|||+||++|+.+.|.++++|.++.+.+.+++||+++++. ++++++ |++.||++
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~---la~~~~------V~~iPTf~ 73 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD---FNKMYE------LYDPPTVM 73 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH---HHHHcC------CCCCCEEE
Confidence 45666673 67899999999999999999999999999998888999999996654 889988 88999999
Q ss_pred EcCCCCC
Q 005592 222 AFPPGCK 228 (689)
Q Consensus 222 ~f~~g~~ 228 (689)
+|++|..
T Consensus 74 ~fk~G~~ 80 (114)
T cd02954 74 FFFRNKH 80 (114)
T ss_pred EEECCEE
Confidence 9999864
No 95
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.37 E-value=6.2e-13 Score=119.87 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=84.2
Q ss_pred eEEecCCCCccccCCCCCEEEEEEcCC--CcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccc
Q 005592 138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (689)
Q Consensus 138 V~~Lt~~nF~~~I~~~~~~LV~FYapw--C~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~ 215 (689)
...+|..||++.+..+.+.+|.||++| |+.|..+.|.++++|+++.+.+.+++||+++++ .|+.+++ |+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~---~la~~f~------V~ 82 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ---ALAARFG------VL 82 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH---HHHHHcC------CC
Confidence 356899999988888899999999997 999999999999999999988899999999665 4999988 89
Q ss_pred cccEEEEcCCCCCCCCCccccccccCHHHHH
Q 005592 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVT 246 (689)
Q Consensus 216 gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv 246 (689)
++||+++|++|.. ...+.|..+.+.++
T Consensus 83 sIPTli~fkdGk~----v~~~~G~~~~~e~~ 109 (111)
T cd02965 83 RTPALLFFRDGRY----VGVLAGIRDWDEYV 109 (111)
T ss_pred cCCEEEEEECCEE----EEEEeCccCHHHHh
Confidence 9999999999964 45667887776654
No 96
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=8.8e-13 Score=145.33 Aligned_cols=105 Identities=23% Similarity=0.471 Sum_probs=92.2
Q ss_pred eeEEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHh--cccceeeeecchhhhhhHHHhhCCCCcccc
Q 005592 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFF 213 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~--~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~ 213 (689)
+|..++..+|...+ ..+..|||.||+|||+||+.++|+|+++|..++ +.+.++++||+ ....+|.+++
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~---~~~~~~~~~~------ 215 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT---VHKSLASRLE------ 215 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc---hHHHHhhhhc------
Confidence 48999999999888 788899999999999999999999999999996 45699999999 4445888888
Q ss_pred cccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHHh
Q 005592 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (689)
Q Consensus 214 V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~v 253 (689)
|++|||+++|++|.. ....|.|.|+.+.|+.|+.+..
T Consensus 216 v~~~Pt~~~f~~~~~---~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 216 VRGYPTLKLFPPGEE---DIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred ccCCceEEEecCCCc---ccccccccccHHHHHHHHHhhc
Confidence 889999999999864 2456789999999999999873
No 97
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.36 E-value=4.3e-13 Score=122.18 Aligned_cols=83 Identities=14% Similarity=0.211 Sum_probs=72.3
Q ss_pred cceeEEecCCCCccccCC---CCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcc
Q 005592 135 VHAFNVVTSEDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQI 211 (689)
Q Consensus 135 ~~~V~~Lt~~nF~~~I~~---~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~ 211 (689)
+..|..++.++|.+.|.+ +.+++|.||+|||++|+.+.|.++++|+.+.+ +++++||++++ .+|++++
T Consensus 3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~~----~l~~~~~---- 73 (113)
T cd02957 3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEKA----FLVNYLD---- 73 (113)
T ss_pred CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchhh----HHHHhcC----
Confidence 346789999999999843 38999999999999999999999999999854 68999999954 4889988
Q ss_pred cccccccEEEEcCCCCC
Q 005592 212 FFRRGLPSLVAFPPGCK 228 (689)
Q Consensus 212 f~V~gyPTL~~f~~g~~ 228 (689)
|+++||+++|++|..
T Consensus 74 --i~~~Pt~~~f~~G~~ 88 (113)
T cd02957 74 --IKVLPTLLVYKNGEL 88 (113)
T ss_pred --CCcCCEEEEEECCEE
Confidence 889999999999964
No 98
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.34 E-value=1.1e-12 Score=117.41 Aligned_cols=96 Identities=17% Similarity=0.141 Sum_probs=79.0
Q ss_pred CCCccccCCCCCEEEEEEcCCCcCCcCchHHH---HHHHHHHhcccceeeeecchhh-hhhHHHhhCCCCcccccccccE
Q 005592 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPS 219 (689)
Q Consensus 144 ~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w---~~~A~~L~~~~~vg~Vdc~~~~-~~~~L~~k~~~~~~f~V~gyPT 219 (689)
++|.+.+.+++++||.||++||++|+.+.|.+ .++++.+.+.+.++.||++++. ....++++++ |.++||
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~------i~~~Pt 75 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG------VFGPPT 75 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC------CCCCCE
Confidence 35667777889999999999999999999999 6888888776789999998532 1345888888 889999
Q ss_pred EEEcCC--CCCCCCCccccccccCHHHHHHHH
Q 005592 220 LVAFPP--GCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 220 L~~f~~--g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
+++|.+ |. ....+.|.++.+.|.+++
T Consensus 76 i~~~~~~~g~----~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 76 YLFYGPGGEP----EPLRLPGFLTADEFLEAL 103 (104)
T ss_pred EEEECCCCCC----CCcccccccCHHHHHHHh
Confidence 999985 43 356788999999998876
No 99
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.32 E-value=1.5e-12 Score=147.49 Aligned_cols=67 Identities=28% Similarity=0.537 Sum_probs=62.3
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccCCch
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g~~~ 103 (689)
.|||++|||+++|+.++||+|||+|+++||||+++ .+.++|++|++||++|+|+.+|+.||.||..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 59999999999999999999999999999999876 45568999999999999999999999998765
No 100
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.29 E-value=3.8e-12 Score=116.14 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=72.3
Q ss_pred eeEEecC-CCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccc
Q 005592 137 AFNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (689)
Q Consensus 137 ~V~~Lt~-~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~ 215 (689)
.+..++. ++|.+.|.++.+++|.||+|||++|+.+.|.++++++.+.+ +++.+||++++.. ++++++ |+
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~~~~---l~~~~~------v~ 74 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEKAPF---LVEKLN------IK 74 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcccCHH---HHHHCC------Cc
Confidence 4677877 88999998889999999999999999999999999998754 6999999996544 888888 88
Q ss_pred cccEEEEcCCCCC
Q 005592 216 GLPSLVAFPPGCK 228 (689)
Q Consensus 216 gyPTL~~f~~g~~ 228 (689)
++||+++|.+|..
T Consensus 75 ~vPt~l~fk~G~~ 87 (113)
T cd02989 75 VLPTVILFKNGKT 87 (113)
T ss_pred cCCEEEEEECCEE
Confidence 9999999999964
No 101
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.28 E-value=4.2e-12 Score=142.43 Aligned_cols=104 Identities=15% Similarity=0.310 Sum_probs=90.1
Q ss_pred ceeEEecCCCCcccc-CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhc---ccceeeeecchhhhhhHHHhhCCCCcc
Q 005592 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQI 211 (689)
Q Consensus 136 ~~V~~Lt~~nF~~~I-~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~---~~~vg~Vdc~~~~~~~~L~~k~~~~~~ 211 (689)
..|..|+.++|++.+ +.++++||.||+|||++|+.+.|.|+++|+.+.+ .+.++.|||+.+. ++. ++
T Consensus 346 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~-~~---- 416 (462)
T TIGR01130 346 GPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP-FE---- 416 (462)
T ss_pred CccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-CC----
Confidence 357889999999988 6789999999999999999999999999999987 5699999999553 222 55
Q ss_pred cccccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 212 f~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
|+++||+++|++|... .+..|.|.++.++|++|+.+.
T Consensus 417 --i~~~Pt~~~~~~~~~~--~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 417 --VEGFPTIKFVPAGKKS--EPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred --ccccCEEEEEeCCCCc--CceEecCcCCHHHHHHHHHhc
Confidence 8899999999988652 356899999999999999887
No 102
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.28 E-value=6.7e-12 Score=119.18 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=82.2
Q ss_pred CCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEE
Q 005592 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (689)
Q Consensus 143 ~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~ 222 (689)
...|+..+..+++++|.|||+||++|+.+.|.+.++++.+.+.+.|..||++.+. ...++++++ |.++||+++
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~------V~~iPt~v~ 82 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYR------VDGIPHFVF 82 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcC------CCCCCEEEE
Confidence 3456666778899999999999999999999999999998776778877776432 124778887 889999999
Q ss_pred cC-CCCCCCCCccccccccCHHHHHHHHHHHhccC
Q 005592 223 FP-PGCKSSDCMTRFEGELSVDAVTDWFATAILKL 256 (689)
Q Consensus 223 f~-~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~v~~l 256 (689)
|. +|.. ...+.|....+.|.+++.+.+...
T Consensus 83 ~~~~G~~----v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 83 LDREGNE----EGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred ECCCCCE----EEEEeCCCCHHHHHHHHHHHHcCC
Confidence 95 5643 456789999999999998875433
No 103
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.25 E-value=9.9e-12 Score=106.33 Aligned_cols=92 Identities=17% Similarity=0.321 Sum_probs=78.2
Q ss_pred CCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEc
Q 005592 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (689)
Q Consensus 144 ~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f 223 (689)
++|++.+..+++++|.||++||++|+.+.|.++++++. .+.+.++.|||+.+. .++++++ +.++||+++|
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~---~~~~~~~------v~~~P~~~~~ 70 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENP---ELAEEYG------VRSIPTFLFF 70 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCCh---hHHHhcC------cccccEEEEE
Confidence 35777776669999999999999999999999999988 666799999999544 3788888 8899999999
Q ss_pred CCCCCCCCCccccccccCHHHHHHHH
Q 005592 224 PPGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 224 ~~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
.+|.. ...|.|..+.+.|.+|+
T Consensus 71 ~~g~~----~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 71 KNGKE----VDRVVGADPKEELEEFL 92 (93)
T ss_pred ECCEE----EEEEecCCCHHHHHHHh
Confidence 98863 46778888889998886
No 104
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=8.2e-12 Score=125.53 Aligned_cols=65 Identities=34% Similarity=0.620 Sum_probs=60.7
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC----cHHHHHHHHHHHHHcCChhhhhhhhccC
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYG 100 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~f~~i~~AyevL~d~~~R~~YD~~g 100 (689)
..+||+||||+++|+..+|++|||+++++||||+++. +.++|..|++||++|+|+..|+.||.++
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 3599999999999999999999999999999999874 4588999999999999999999999985
No 105
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.24 E-value=5.2e-12 Score=111.01 Aligned_cols=93 Identities=16% Similarity=0.267 Sum_probs=73.5
Q ss_pred CCCCccccCC--CCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEE
Q 005592 143 SEDFPSIFHD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (689)
Q Consensus 143 ~~nF~~~I~~--~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL 220 (689)
.++|++.+.. +++++|.||++||++|+++.|.++++++.+.+.+.+.+||++++. .++++++ |+++||+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~---~~~~~~~------i~~~Pt~ 72 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP---EISEKFE------ITAVPTF 72 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH---HHHHhcC------CccccEE
Confidence 3567777743 499999999999999999999999999998667799999998544 4888888 8899999
Q ss_pred EEcCCCCCCCCCccccccccCHHHHHHHH
Q 005592 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
++|.+|.. ...+.| ...+.|.+.+
T Consensus 73 ~~~~~g~~----~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 73 VFFRNGTI----VDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEECCEE----EEEEeC-CCHHHHHHhh
Confidence 99998753 233455 3466666543
No 106
>PTZ00051 thioredoxin; Provisional
Probab=99.21 E-value=9.2e-12 Score=109.74 Aligned_cols=92 Identities=15% Similarity=0.319 Sum_probs=73.7
Q ss_pred EEec-CCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccc
Q 005592 139 NVVT-SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (689)
Q Consensus 139 ~~Lt-~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gy 217 (689)
.+++ .++|..+++.+++++|.||++||++|+.+.|.|+++++.+.+ +.++.|||+++. .++++++ |.++
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~~~---~~~~~~~------v~~~ 72 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDELS---EVAEKEN------ITSM 72 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcchH---HHHHHCC------Ccee
Confidence 3444 456888788889999999999999999999999999997643 689999999554 4889988 8899
Q ss_pred cEEEEcCCCCCCCCCccccccccCHHHH
Q 005592 218 PSLVAFPPGCKSSDCMTRFEGELSVDAV 245 (689)
Q Consensus 218 PTL~~f~~g~~~~~~~~~Y~G~rs~~~I 245 (689)
||+++|.+|.. ...+.|. ..++|
T Consensus 73 Pt~~~~~~g~~----~~~~~G~-~~~~~ 95 (98)
T PTZ00051 73 PTFKVFKNGSV----VDTLLGA-NDEAL 95 (98)
T ss_pred eEEEEEeCCeE----EEEEeCC-CHHHh
Confidence 99999998864 3456675 34544
No 107
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.20 E-value=2.3e-11 Score=107.58 Aligned_cols=86 Identities=12% Similarity=0.158 Sum_probs=75.7
Q ss_pred CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCC
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~ 230 (689)
+.+++++|.||++||+.|+.+.|.++++++.+.+.+.++.||++++.. ++++++ |.++||+++|.+|..
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~---l~~~~~------v~~vPt~~i~~~g~~-- 79 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE---IAEAAG------IMGTPTVQFFKDKEL-- 79 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH---HHHHCC------CeeccEEEEEECCeE--
Confidence 578899999999999999999999999999998777899999995544 788888 889999999988754
Q ss_pred CCccccccccCHHHHHHHH
Q 005592 231 DCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 231 ~~~~~Y~G~rs~~~Iv~fv 249 (689)
...+.|..+.+.|.+|+
T Consensus 80 --v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 80 --VKEISGVKMKSEYREFI 96 (97)
T ss_pred --EEEEeCCccHHHHHHhh
Confidence 56788999999999886
No 108
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.16 E-value=2.5e-11 Score=114.32 Aligned_cols=97 Identities=11% Similarity=0.063 Sum_probs=75.6
Q ss_pred CCCCcccc--CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEE
Q 005592 143 SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (689)
Q Consensus 143 ~~nF~~~I--~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL 220 (689)
.++|++.| ..+++++|.|||+||++|+.+.|.++++|+++.+.+.|.+||+++++. ++++++ |++.||+
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d---la~~y~------I~~~~t~ 81 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD---FNTMYE------LYDPCTV 81 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH---HHHHcC------ccCCCcE
Confidence 46687877 367899999999999999999999999999998888999999996654 889988 8888776
Q ss_pred E-EcCCCCCCCCCcccccc--------ccCHHHHHHHHHH
Q 005592 221 V-AFPPGCKSSDCMTRFEG--------ELSVDAVTDWFAT 251 (689)
Q Consensus 221 ~-~f~~g~~~~~~~~~Y~G--------~rs~~~Iv~fv~k 251 (689)
+ +|++|... .....| ..+.++|++-+..
T Consensus 82 ~~ffk~g~~~---vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 82 MFFFRNKHIM---IDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred EEEEECCeEE---EEEecccccccccccCCHHHHHHHHHH
Confidence 6 88888631 233356 3455555554443
No 109
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7e-11 Score=106.28 Aligned_cols=84 Identities=13% Similarity=0.202 Sum_probs=69.1
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCC
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~ 231 (689)
.+++++|.|||+|||.|+.++|.+.++|.++.. +.|.+||+++ ...+|++++ |+..||+++|++|..
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~------V~~~PTf~f~k~g~~--- 86 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFN------VKAMPTFVFYKGGEE--- 86 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcC------ceEeeEEEEEECCEE---
Confidence 468999999999999999999999999999988 9999999997 345889988 889999999999875
Q ss_pred CccccccccCHHHHHHHHH
Q 005592 232 CMTRFEGELSVDAVTDWFA 250 (689)
Q Consensus 232 ~~~~Y~G~rs~~~Iv~fv~ 250 (689)
...+-|.- .+.+.+.+.
T Consensus 87 -~~~~vGa~-~~~l~~~i~ 103 (106)
T KOG0907|consen 87 -VDEVVGAN-KAELEKKIA 103 (106)
T ss_pred -EEEEecCC-HHHHHHHHH
Confidence 35555544 235554443
No 110
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.13 E-value=6.8e-11 Score=107.84 Aligned_cols=95 Identities=12% Similarity=0.152 Sum_probs=76.9
Q ss_pred CccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCC
Q 005592 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (689)
Q Consensus 146 F~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~ 225 (689)
|...+.+....+|.||++||++|+.+.|.+++++... +.+.+..||.++++ .++++++ |+++||+++|.+
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~---~l~~~~~------v~~vPt~~i~~~ 84 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK---EKAEKYG------VERVPTTIFLQD 84 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH---HHHHHcC------CCcCCEEEEEeC
Confidence 4444555667889999999999999999999999876 56789999999654 4889988 889999999998
Q ss_pred CCCCCCCccccccccCHHHHHHHHHHH
Q 005592 226 GCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 226 g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
|... ....|.|..+...+.+|+...
T Consensus 85 g~~~--~~~~~~G~~~~~el~~~i~~i 109 (113)
T cd02975 85 GGKD--GGIRYYGLPAGYEFASLIEDI 109 (113)
T ss_pred Ceec--ceEEEEecCchHHHHHHHHHH
Confidence 7542 223688988888999988765
No 111
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.12 E-value=7.6e-11 Score=125.56 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCCccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC--------cHHHHHH
Q 005592 11 KAYWAPLILFGLGLFYQLVVL---PRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--------STADFLK 79 (689)
Q Consensus 11 ~~~~~~i~l~~~~~~~~~~~~---~~~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--------~~~~f~~ 79 (689)
|.+++.+.++++.++.+-+.. .....-|||+||||+.+++..+||++||+|+.++||||-++ .++.+.+
T Consensus 69 R~If~ivgWl~i~~L~~~I~~~k~~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ 148 (610)
T COG5407 69 RKIFTIVGWLVISYLISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKT 148 (610)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHH
Confidence 444444455555555433322 11125699999999999999999999999999999998653 4677999
Q ss_pred HHHHHHHcCChhhhhhhhccCCch
Q 005592 80 IQYAYELLTDPLWKRNYDVYGIDE 103 (689)
Q Consensus 80 i~~AyevL~d~~~R~~YD~~g~~~ 103 (689)
|++||+.|+|...|+.|-.||..+
T Consensus 149 ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 149 ITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred HHHHHHhhhhHHHHHHHHhcCCCC
Confidence 999999999999999999999765
No 112
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.12 E-value=7.7e-11 Score=114.40 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=55.0
Q ss_pred cCcccccCcCCC--CCHHHHHHHHHHHHHhcCCCCCCCcHH------HHHHHHHHHHHcCChhhhhhhhc
Q 005592 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPSTA------DFLKIQYAYELLTDPLWKRNYDV 98 (689)
Q Consensus 37 ~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~~------~f~~i~~AyevL~d~~~R~~YD~ 98 (689)
.|||++|||++. ++..+|+++||+|+++||||++....+ .+..||+||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 489999999997 789999999999999999998764333 36799999999999999999974
No 113
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.10 E-value=1.4e-10 Score=103.02 Aligned_cols=88 Identities=19% Similarity=0.253 Sum_probs=74.2
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccc--cccEEEEcCC--CC
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR--GLPSLVAFPP--GC 227 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~--gyPTL~~f~~--g~ 227 (689)
.+.+++|.||++||++|+.+.|.++++|+++++.+.++.||++++.. +++.++ |. ++|++++|.. |.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~---~~~~~~------i~~~~~P~~~~~~~~~~~ 81 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR---HLEYFG------LKEEDLPVIAIINLSDGK 81 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH---HHHHcC------CChhhCCEEEEEeccccc
Confidence 36799999999999999999999999999999999999999996544 888888 77 9999999998 43
Q ss_pred CCCCCccccccccCHHHHHHHHHHH
Q 005592 228 KSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 228 ~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
+ +....|..+.++|.+|+.+.
T Consensus 82 k----~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 82 K----YLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred c----cCCCccccCHHHHHHHHHhh
Confidence 3 22223456999999998764
No 114
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.10 E-value=6.8e-11 Score=116.16 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=70.1
Q ss_pred eeEEecC-CCCccccCC---CCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCccc
Q 005592 137 AFNVVTS-EDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (689)
Q Consensus 137 ~V~~Lt~-~nF~~~I~~---~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f 212 (689)
.|..++. ++|.+.|.. +.+++|.||+|||+.|+.+.|.++++|..+ +.++|.+||+++. .++.+++
T Consensus 63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-~~vkF~kVd~d~~----~l~~~f~----- 132 (175)
T cd02987 63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-PAVKFCKIRASAT----GASDEFD----- 132 (175)
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-CCeEEEEEeccch----hhHHhCC-----
Confidence 5788998 999999842 349999999999999999999999999987 4579999999943 4788888
Q ss_pred ccccccEEEEcCCCCC
Q 005592 213 FRRGLPSLVAFPPGCK 228 (689)
Q Consensus 213 ~V~gyPTL~~f~~g~~ 228 (689)
|+++|||++|++|..
T Consensus 133 -v~~vPTlllyk~G~~ 147 (175)
T cd02987 133 -TDALPALLVYKGGEL 147 (175)
T ss_pred -CCCCCEEEEEECCEE
Confidence 889999999999864
No 115
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.10 E-value=1.1e-10 Score=107.99 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=80.2
Q ss_pred eEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhh--------hhhHHHhhCCCC
Q 005592 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIG 209 (689)
Q Consensus 138 V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~--------~~~~L~~k~~~~ 209 (689)
+..+|.++|.+.+.+++..+|.||++||++|+.+.|..++++++ ....+..||.+.+. ....+.+++++
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i- 84 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI- 84 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCC-
Confidence 35688888999998899999999999999999999999999987 33578888887432 22345566542
Q ss_pred cccccccccEEEEcCCCCCCCCCcccccc-ccCHHHHHHHH
Q 005592 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWF 249 (689)
Q Consensus 210 ~~f~V~gyPTL~~f~~g~~~~~~~~~Y~G-~rs~~~Iv~fv 249 (689)
...|.+.||+++|.+|.. .....| ..+.++|.+|+
T Consensus 85 -~~~i~~~PT~v~~k~Gk~----v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 85 -PTSFMGTPTFVHITDGKQ----VSVRCGSSTTAQELQDIA 120 (122)
T ss_pred -cccCCCCCEEEEEeCCeE----EEEEeCCCCCHHHHHHHh
Confidence 133778999999999965 244567 56788998885
No 116
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.09 E-value=1.1e-10 Score=113.87 Aligned_cols=62 Identities=15% Similarity=0.303 Sum_probs=54.6
Q ss_pred cCcccccCcCCC--CCHHHHHHHHHHHHHhcCCCCCCC--------cHHHHHHHHHHHHHcCChhhhhhhhc
Q 005592 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (689)
Q Consensus 37 ~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~--------~~~~f~~i~~AyevL~d~~~R~~YD~ 98 (689)
.|||++|||++. ++..+|+++||+|++++|||+... +.+.|..||+||++|+||.+|..|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999996 678999999999999999998542 23468999999999999999999983
No 117
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.03 E-value=3.6e-10 Score=110.74 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=55.1
Q ss_pred CccCcccccCcCCC--CCHHHHHHHHHHHHHhcCCCCCCC--c------HHHHHHHHHHHHHcCChhhhhhhhc
Q 005592 35 FPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--S------TADFLKIQYAYELLTDPLWKRNYDV 98 (689)
Q Consensus 35 ~~~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~--~------~~~f~~i~~AyevL~d~~~R~~YD~ 98 (689)
+..|||++|||++. ++..+|+++||+|+++||||++.. . .+.+..||+||++|+||.+|..|..
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 35799999999986 578999999999999999998652 2 2236899999999999999999984
No 118
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2e-10 Score=123.47 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=60.8
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHHHcCChhhhhhhhccC
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYG 100 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~AyevL~d~~~R~~YD~~g 100 (689)
..|+|.+|||+.++|.++||+.|||+|...|||||. .++|.|+.++.|||+|+|+++|+.||.--
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 569999999999999999999999999999999875 67889999999999999999999999554
No 119
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.02 E-value=2.7e-10 Score=102.90 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=48.5
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcC
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~AyevL~ 88 (689)
..++|++|||+++++.+|||++||+|++++|||++ ++.+.|.+|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999985 67889999999999985
No 120
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.01 E-value=1.6e-10 Score=104.41 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=65.7
Q ss_pred CCCccccC--CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEE
Q 005592 144 EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (689)
Q Consensus 144 ~nF~~~I~--~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~ 221 (689)
+.|++.|. .+++++|.|+|+||+.|+.+.|.++++|+++...+.|.+||.++.+. ++++++ |+..||++
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d---va~~y~------I~amPtfv 73 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV---YTQYFD------ISYIPSTI 73 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH---HHHhcC------ceeCcEEE
Confidence 34556662 58999999999999999999999999999997778999999996554 889988 88999999
Q ss_pred EcCCCCC
Q 005592 222 AFPPGCK 228 (689)
Q Consensus 222 ~f~~g~~ 228 (689)
+|.+|..
T Consensus 74 ffkngkh 80 (114)
T cd02986 74 FFFNGQH 80 (114)
T ss_pred EEECCcE
Confidence 9998863
No 121
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.01 E-value=4.9e-10 Score=109.33 Aligned_cols=63 Identities=16% Similarity=0.354 Sum_probs=55.7
Q ss_pred ccCcccccCcCCC--CCHHHHHHHHHHHHHhcCCCCCCC--------cHHHHHHHHHHHHHcCChhhhhhhhc
Q 005592 36 PPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (689)
Q Consensus 36 ~~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~--------~~~~f~~i~~AyevL~d~~~R~~YD~ 98 (689)
..|||++||+++. .+..+|+++||+|+++||||++.+ +.+.+..||+||++|+||.+|..|+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 4699999999997 557999999999999999998653 23469999999999999999999984
No 122
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.99 E-value=1.4e-09 Score=92.33 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=67.6
Q ss_pred EEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCccc
Q 005592 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (689)
Q Consensus 156 ~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~ 235 (689)
.++.||++||++|+.+.|.++++++++.+.+.+..||+++++. ++++++ |+++||+++ +|. ..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~---~~~~~~------v~~vPt~~~--~g~------~~ 64 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ---KAMEYG------IMAVPAIVI--NGD------VE 64 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH---HHHHcC------CccCCEEEE--CCE------EE
Confidence 4679999999999999999999999988778999999985544 778887 889999986 552 36
Q ss_pred cccccCHHHHHHHHHHH
Q 005592 236 FEGELSVDAVTDWFATA 252 (689)
Q Consensus 236 Y~G~rs~~~Iv~fv~k~ 252 (689)
+.|..+.+.|.+++.+.
T Consensus 65 ~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 65 FIGAPTKEELVEAIKKR 81 (82)
T ss_pred EecCCCHHHHHHHHHhh
Confidence 78998999999988764
No 123
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.98 E-value=4.1e-10 Score=112.17 Aligned_cols=97 Identities=13% Similarity=0.244 Sum_probs=75.5
Q ss_pred eeEEecCCCCcccc-CC--CCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccc
Q 005592 137 AFNVVTSEDFPSIF-HD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I-~~--~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~ 213 (689)
.|..++..+|...| .. +.+++|.||++||+.|+.+.|.|+++|..+. .++|.+||++ . ++.+++
T Consensus 83 ~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad---~---~~~~~~------ 149 (192)
T cd02988 83 EVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIIST---Q---CIPNYP------ 149 (192)
T ss_pred eEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhH---H---hHhhCC------
Confidence 57889999998877 33 3589999999999999999999999999974 5799999988 3 246666
Q ss_pred cccccEEEEcCCCCCCCCCccccc------c-ccCHHHHHHHHH
Q 005592 214 RRGLPSLVAFPPGCKSSDCMTRFE------G-ELSVDAVTDWFA 250 (689)
Q Consensus 214 V~gyPTL~~f~~g~~~~~~~~~Y~------G-~rs~~~Iv~fv~ 250 (689)
|++.|||++|++|.. ...+. | ..+.++|-.++.
T Consensus 150 i~~lPTlliyk~G~~----v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 150 DKNLPTILVYRNGDI----VKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred CCCCCEEEEEECCEE----EEEEeCchhhCCCCCCHHHHHHHHH
Confidence 889999999999964 22332 3 345666655554
No 124
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.4e-10 Score=119.15 Aligned_cols=69 Identities=35% Similarity=0.561 Sum_probs=62.4
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCCc----HHHHHHHHHHHHHcCChhhhhhhhccCCchh
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~i~~AyevL~d~~~R~~YD~~g~~~~ 104 (689)
..|+|++|||.++|+..+|++|||+++++||||+|+.. ..+|.+|.+||++|+|+.+|..||.+|.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~ 74 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGL 74 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccc
Confidence 35999999999999999999999999999999998743 3469999999999999999999999998544
No 125
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.94 E-value=7.9e-10 Score=102.24 Aligned_cols=96 Identities=18% Similarity=0.285 Sum_probs=73.2
Q ss_pred cccCCC-CCEEEEEEcCCCcCCcCchHHHH---HHHHHHhcccceeeeecchhh----------hhhHHHhhCCCCcccc
Q 005592 148 SIFHDS-KPWLIQVYSDGSYLCGQFSGAWK---TIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIFF 213 (689)
Q Consensus 148 ~~I~~~-~~~LV~FYapwC~~Ck~l~p~w~---~~A~~L~~~~~vg~Vdc~~~~----------~~~~L~~k~~~~~~f~ 213 (689)
....++ ++++|.||++||++|+.+.|.+. .+...+...+.+..||.+++. ....++.+++
T Consensus 8 ~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~------ 81 (125)
T cd02951 8 EAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR------ 81 (125)
T ss_pred HHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC------
Confidence 344567 89999999999999999999885 566666655577888877431 1234788887
Q ss_pred cccccEEEEcCCC-CCCCCCccccccccCHHHHHHHHHHH
Q 005592 214 RRGLPSLVAFPPG-CKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 214 V~gyPTL~~f~~g-~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
|+++||+++|.++ .. ....+.|..+.+.+..++...
T Consensus 82 v~~~Pt~~~~~~~gg~---~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 82 VRFTPTVIFLDPEGGK---EIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred CccccEEEEEcCCCCc---eeEEecCCCCHHHHHHHHHHH
Confidence 8899999999875 33 245678988888888887765
No 126
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=98.92 E-value=1.5e-08 Score=94.86 Aligned_cols=118 Identities=23% Similarity=0.289 Sum_probs=86.8
Q ss_pred CCCccccccchhhhccCccCccCCCCCCcccEEEEEecCC-----chhHHHHHHHHHHHHHhhccccccccccccccchH
Q 005592 366 QELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-----SPELNKMRETIRRVQETLLSDDESNAADTDQSLAP 440 (689)
Q Consensus 366 ~~lp~lts~~~~~~~c~~~~~~~~~k~~~~~lCVIl~~~~-----~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~ 440 (689)
|.+.+|++++.++..|-. + .+|||++.+. .++.++.++.|+++|+
T Consensus 2 ~~~~~l~~~~~~~~~C~~-------~----~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk------------------- 51 (130)
T cd02983 2 PEIIELTSEDVFEETCEE-------K----QLCIIAFLPHILDCQASCRNKYLEILKSVAE------------------- 51 (130)
T ss_pred CceEEecCHHHHHhhccC-------C----CeEEEEEcCccccCCHHHHHHHHHHHHHHHH-------------------
Confidence 568899999999989932 2 5999999874 2345667777777766
Q ss_pred HHHHcCCCcEEEEEEeCcchHHHHHHhc-ccCCcccccCCcCCCCCCCeEEEEEeecCCCcccceeecccCccccccccc
Q 005592 441 AAVAFRNKRLTFAWLDGEAQDRYCSFYL-FSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQ 519 (689)
Q Consensus 441 ~A~~~k~~~l~F~wvd~~~q~~f~~~f~-~~~~~~~~c~~~~~~~~~P~lvI~~~rrn~~~~~~k~~~~~w~~l~~~~~~ 519 (689)
+||++++.|+|+|++.|..++++|- ..+ ..|.++++ |... -||. +
T Consensus 52 ---~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~-------------~~P~v~i~----~~~~--~KY~------~------ 97 (130)
T cd02983 52 ---KFKKKPWGWLWTEAGAQLDLEEALNIGGF-------------GYPAMVAI----NFRK--MKFA------T------ 97 (130)
T ss_pred ---HhcCCcEEEEEEeCcccHHHHHHcCCCcc-------------CCCEEEEE----eccc--Cccc------c------
Confidence 8988889999999999999999983 322 35999998 6644 2554 1
Q ss_pred cCCccccchhccCCCCchHHHHHHHHHHhcCCCCCCCCcc
Q 005592 520 EVDPASQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFY 559 (689)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~ 559 (689)
+.|+-+.+.|.+|+.+++. |.....++.
T Consensus 98 -----------~~~~~t~e~i~~Fv~~~l~-Gkl~~~~~~ 125 (130)
T cd02983 98 -----------LKGSFSEDGINEFLRELSY-GRGPTLPVN 125 (130)
T ss_pred -----------ccCccCHHHHHHHHHHHHc-CCcccccCC
Confidence 1222366899999999998 655555533
No 127
>PHA02624 large T antigen; Provisional
Probab=98.87 E-value=1.7e-09 Score=122.11 Aligned_cols=60 Identities=12% Similarity=0.232 Sum_probs=57.0
Q ss_pred ccCcccccCcCCCC--CHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCChhhhhhh
Q 005592 36 PPSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96 (689)
Q Consensus 36 ~~d~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~AyevL~d~~~R~~Y 96 (689)
..++|++|||+++| +.++||+|||+++++||||++ +++++|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 45899999999999 999999999999999999996 6788999999999999999999999
No 128
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.3e-09 Score=115.99 Aligned_cols=66 Identities=26% Similarity=0.428 Sum_probs=60.2
Q ss_pred ccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCC----cHHHHHHHHHHHHHcCChhhhhhhhccCC
Q 005592 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGI 101 (689)
Q Consensus 36 ~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~f~~i~~AyevL~d~~~R~~YD~~g~ 101 (689)
..|||.||||.+.++..|||+|||++++.||||++.+ ++.+|+++.+||.+|+|+.+|..||..-.
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d 441 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD 441 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence 5799999999999999999999999999999998764 35579999999999999999999997643
No 129
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=3.7e-09 Score=105.85 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=77.8
Q ss_pred eEEe-cCCCCccccC--CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCccccc
Q 005592 138 FNVV-TSEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (689)
Q Consensus 138 V~~L-t~~nF~~~I~--~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V 214 (689)
|.++ ++.+|...+. ..+.++|.|||.|||.|++++|+|+.+|..+. ...+.+||.++-+. .|..+| |
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~---taa~~g------V 72 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRG---TAATNG------V 72 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhc---hhhhcC------c
Confidence 3444 4567888883 56799999999999999999999999999983 34789999883332 566667 8
Q ss_pred ccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 215 ~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
+..||+++|.+|.+. ..++|. ++.+|.+-+.++
T Consensus 73 ~amPTFiff~ng~ki----d~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 73 NAMPTFIFFRNGVKI----DQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred ccCceEEEEecCeEe----eeecCC-CHHHHHHHHHHH
Confidence 999999999999763 456664 467777777766
No 130
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.84 E-value=2e-09 Score=112.60 Aligned_cols=53 Identities=26% Similarity=0.439 Sum_probs=48.3
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC----------CcHHHHHHHHHHHHHcCC
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELLTD 89 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~----------~~~~~f~~i~~AyevL~d 89 (689)
.++|++|||++++|.++||+|||+|+++||||++. .++++|++|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999852 145789999999999985
No 131
>PTZ00062 glutaredoxin; Provisional
Probab=98.82 E-value=2.4e-08 Score=100.16 Aligned_cols=88 Identities=9% Similarity=0.067 Sum_probs=72.0
Q ss_pred CCCCccccCC-CCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEE
Q 005592 143 SEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (689)
Q Consensus 143 ~~nF~~~I~~-~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~ 221 (689)
.++|.+.+.+ ....++.|+|+||+.|+.+.|...++++++ +.+.+..||++ ++ |.++||++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~~d-----------~~------V~~vPtfv 67 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVNLA-----------DA------NNEYGVFE 67 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEccc-----------cC------cccceEEE
Confidence 4556667753 477899999999999999999999999987 55799999976 44 88999999
Q ss_pred EcCCCCCCCCCccccccccCHHHHHHHHHHHh
Q 005592 222 AFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (689)
Q Consensus 222 ~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~v 253 (689)
+|.+|.. ...+.|.- +..|..++.+..
T Consensus 68 ~~~~g~~----i~r~~G~~-~~~~~~~~~~~~ 94 (204)
T PTZ00062 68 FYQNSQL----INSLEGCN-TSTLVSFIRGWA 94 (204)
T ss_pred EEECCEE----EeeeeCCC-HHHHHHHHHHHc
Confidence 9999875 35566654 889999998873
No 132
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.80 E-value=2.4e-09 Score=98.35 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=63.6
Q ss_pred CCCCccccCC--CCCEEEEEEc-------CCCcCCcCchHHHHHHHHHHhcccceeeeecchhh----hhhHHHhhCCCC
Q 005592 143 SEDFPSIFHD--SKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIG 209 (689)
Q Consensus 143 ~~nF~~~I~~--~~~~LV~FYa-------pwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~----~~~~L~~k~~~~ 209 (689)
.++|.+.|.. +++++|.||| +||++|+.+.|.+++++..+.+.+.+.+||+++.. ....++.+++
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~-- 86 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK-- 86 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC--
Confidence 3556666743 6899999999 99999999999999999998867899999997532 1123666666
Q ss_pred cccccc-cccEEEEcCCCCC
Q 005592 210 QIFFRR-GLPSLVAFPPGCK 228 (689)
Q Consensus 210 ~~f~V~-gyPTL~~f~~g~~ 228 (689)
|+ ++||+++|..|.+
T Consensus 87 ----I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 87 ----LTTGVPTLLRWKTPQR 102 (119)
T ss_pred ----cccCCCEEEEEcCCce
Confidence 88 9999999977643
No 133
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.73 E-value=3.4e-07 Score=89.67 Aligned_cols=168 Identities=14% Similarity=0.230 Sum_probs=121.0
Q ss_pred chHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCccccccc-cCHHHHHHHH
Q 005592 171 FSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF 249 (689)
Q Consensus 171 l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~Y~G~-rs~~~Iv~fv 249 (689)
....|.++|+.+.+.+.++.+.-. . +|++++ +.. |+|++|+++.. .+..|.|. .+.++|.+|+
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~~~---~---~~~~~~------~~~-p~i~~~k~~~~---~~~~y~~~~~~~~~l~~fI 71 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTFNE---E---LAKKYG------IKE-PTIVVYKKFDE---KPVVYDGDKFTPEELKKFI 71 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE-H---H---HHHHCT------CSS-SEEEEEECTTT---SEEEESSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCcEEEEEcHH---H---HHHHhC------CCC-CcEEEeccCCC---CceecccccCCHHHHHHHH
Confidence 456899999999988888888733 2 778887 667 99999998544 46889998 8999999999
Q ss_pred HHHhccCCcceecccchhhhhhhhhcCCCcEEEEEEeCCCCC----CcHHHHHHHHhcccCceEEEEEecccccHHHHhh
Q 005592 250 ATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER----ASPFVRQISRNYWAYASFAFVLWREEESSIWWNT 325 (689)
Q Consensus 250 ~k~v~~lP~~~~it~~~~~~~Fl~~~~~~k~~Vl~f~~~~~~----~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~ 325 (689)
... .+|....++..+ ...+.... ..+.+++|..+... ....++.+|..+++.+.|+++... ....+++.
T Consensus 72 ~~~--~~P~v~~~t~~n-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~--~~~~~~~~ 144 (184)
T PF13848_consen 72 KKN--SFPLVPELTPEN-FEKLFSSP--KPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDAD--DFPRLLKY 144 (184)
T ss_dssp HHH--SSTSCEEESTTH-HHHHHSTS--SEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETT--TTHHHHHH
T ss_pred HHh--ccccccccchhh-HHHHhcCC--CceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehH--HhHHHHHH
Confidence 988 688877777665 55555432 12355556532111 122345688888888888888644 23668899
Q ss_pred cCCC--CCCEEEEEeCCCCC-ceeecCCCChHHHHHHHH
Q 005592 326 FEVE--SAPAIVFLKDPGVK-PVVYYGSFNNSRLSEVME 361 (689)
Q Consensus 326 f~V~--~~PtIvvfk~~~~~-p~~y~g~~~~~~L~~fI~ 361 (689)
|+++ ..|+++++...... ...+.++++.+.|.+|++
T Consensus 145 ~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 145 FGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp TTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred cCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence 9998 69999999854433 222378889999999986
No 134
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.64 E-value=6.7e-08 Score=98.17 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=66.7
Q ss_pred CCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCc
Q 005592 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM 233 (689)
Q Consensus 154 ~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~ 233 (689)
...++.||++||++|+.+.|.+++++.. .+.+.+..||.++++ .++++++ |.++||++++.+|.
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~---~~~~~~~------V~~vPtl~i~~~~~------ 197 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENP---DLAEKYG------VMSVPKIVINKGVE------ 197 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCH---HHHHHhC------CccCCEEEEecCCE------
Confidence 3455569999999999999999999877 456778899998554 4888888 88999999987652
Q ss_pred cccccccCHHHHHHHHHH
Q 005592 234 TRFEGELSVDAVTDWFAT 251 (689)
Q Consensus 234 ~~Y~G~rs~~~Iv~fv~k 251 (689)
.|.|....+.|++|+.+
T Consensus 198 -~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 -EFVGAYPEEQFLEYILS 214 (215)
T ss_pred -EEECCCCHHHHHHHHHh
Confidence 37899999999999865
No 135
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.64 E-value=1.1e-08 Score=101.93 Aligned_cols=101 Identities=12% Similarity=0.274 Sum_probs=86.7
Q ss_pred ceeEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhccc-ceeeeecchhhhhhHHHhhCCCCccccc
Q 005592 136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFR 214 (689)
Q Consensus 136 ~~V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~~~~~~~~L~~k~~~~~~f~V 214 (689)
+++..++.+|+..++.. -|+|+||||||+.|+.+.|.|...|.--.+.. ++|.||.+.++ +++-+|.|
T Consensus 24 s~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np---------gLsGRF~v 92 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP---------GLSGRFLV 92 (248)
T ss_pred ceeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc---------ccceeeEE
Confidence 36789999999887743 49999999999999999999999998766764 99999999554 44457889
Q ss_pred ccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 215 ~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
...|||.=.++|. ...|.|.|+.+++++|+..+
T Consensus 93 taLptIYHvkDGe-----FrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 93 TALPTIYHVKDGE-----FRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred EecceEEEeeccc-----cccccCcccchhHHHHHHhh
Confidence 9999999999884 67999999999999999754
No 136
>PHA02125 thioredoxin-like protein
Probab=98.63 E-value=3.9e-08 Score=82.82 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=50.8
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCcccc
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~Y 236 (689)
+|.||++||++|+.+.|.+++++ ..+..||++++. .++++++ |+++||++ .|.. ...+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~---~l~~~~~------v~~~PT~~---~g~~----~~~~ 59 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGV---ELTAKHH------IRSLPTLV---NTST----LDRF 59 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCH---HHHHHcC------CceeCeEE---CCEE----EEEE
Confidence 78999999999999999987653 357889988544 4889988 88999997 3432 2356
Q ss_pred cc-ccCHHHHHH
Q 005592 237 EG-ELSVDAVTD 247 (689)
Q Consensus 237 ~G-~rs~~~Iv~ 247 (689)
.| +++..+|.+
T Consensus 60 ~G~~~~~~~l~~ 71 (75)
T PHA02125 60 TGVPRNVAELKE 71 (75)
T ss_pred eCCCCcHHHHHH
Confidence 66 345455544
No 137
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.61 E-value=3.1e-08 Score=90.95 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=58.6
Q ss_pred CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCccccccc--ccEEEEcC-CCC
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG--LPSLVAFP-PGC 227 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~g--yPTL~~f~-~g~ 227 (689)
..++++||.|||+||++|+.+.|.+.+.+........+..||.+.+.. .+...++ +.| +||+++|. +|.
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~------~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFS------PDGGYIPRILFLDPSGD 88 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcc------cCCCccceEEEECCCCC
Confidence 468899999999999999999999999877554334666666664322 1334555 655 99999996 554
Q ss_pred CCCCCccccccccCHHHHHHHH
Q 005592 228 KSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 228 ~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
.. .......|.++.+.+.+++
T Consensus 89 ~~-~~~~~~~~~~~~~~f~~~~ 109 (117)
T cd02959 89 VH-PEIINKKGNPNYKYFYSSA 109 (117)
T ss_pred Cc-hhhccCCCCccccccCCCH
Confidence 31 1112334555444444433
No 138
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.58 E-value=5.9e-08 Score=82.06 Aligned_cols=73 Identities=18% Similarity=0.089 Sum_probs=56.2
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCcccc
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~Y 236 (689)
-|.||++||++|+.+.|.|+++++++...+.+..||-. . .+.+++ |.+.|||++ +|.. .+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~---~---~a~~~~------v~~vPti~i--~G~~------~~ 61 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDM---N---EILEAG------VTATPGVAV--DGEL------VI 61 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH---H---HHHHcC------CCcCCEEEE--CCEE------EE
Confidence 38999999999999999999999998766788777711 2 356677 889999999 6642 26
Q ss_pred ccc-cCHHHHHHHH
Q 005592 237 EGE-LSVDAVTDWF 249 (689)
Q Consensus 237 ~G~-rs~~~Iv~fv 249 (689)
.|. .+.+.|.+++
T Consensus 62 ~G~~~~~~~l~~~l 75 (76)
T TIGR00412 62 MGKIPSKEEIKEIL 75 (76)
T ss_pred EeccCCHHHHHHHh
Confidence 775 4557777664
No 139
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.58 E-value=5.5e-08 Score=112.42 Aligned_cols=101 Identities=16% Similarity=0.234 Sum_probs=77.1
Q ss_pred CCCCccccC----CCCCEEEEEEcCCCcCCcCchHHH---HHHHHHHhcccceeeeecchh-hhhhHHHhhCCCCccccc
Q 005592 143 SEDFPSIFH----DSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDI-RLATHLAERKPIGQIFFR 214 (689)
Q Consensus 143 ~~nF~~~I~----~~~~~LV~FYapwC~~Ck~l~p~w---~~~A~~L~~~~~vg~Vdc~~~-~~~~~L~~k~~~~~~f~V 214 (689)
.++|++.+. ++++++|.|||+||++|+.+++.. .++.+.+++ +.+.+||++++ .....++++++ |
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~------v 532 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYN------V 532 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcC------C
Confidence 456666662 468999999999999999999875 677777764 57889999854 23345888888 8
Q ss_pred ccccEEEEcCC-CCCCCCCccccccccCHHHHHHHHHHH
Q 005592 215 RGLPSLVAFPP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 215 ~gyPTL~~f~~-g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
.++||+++|.+ |... ....+.|..+.+++.+++.+.
T Consensus 533 ~g~Pt~~~~~~~G~~i--~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 533 LGLPTILFFDAQGQEI--PDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCEEEEECCCCCCc--ccccccCCCCHHHHHHHHHHh
Confidence 89999999974 5421 124568999999999998764
No 140
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.9e-08 Score=93.40 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=56.5
Q ss_pred CCccCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCCc----HHHHHHHHHHHHHcCChhhhhhh
Q 005592 34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNY 96 (689)
Q Consensus 34 ~~~~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~i~~AyevL~d~~~R~~Y 96 (689)
.+..|+|+||.|.+..+.++||+.||+|+...|||+|+.+ ...|.-+.+||..|-|+..|..-
T Consensus 50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4578999999999999999999999999999999999854 44599999999999999876654
No 141
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.53 E-value=7.9e-08 Score=86.71 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=59.2
Q ss_pred CCCCCEEEEEEcCCCcCCcCchHHHHHH---HHHHhcccceeeeecchhh-----------------hhhHHHhhCCCCc
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTI---AALLEGIANTGMVELGDIR-----------------LATHLAERKPIGQ 210 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p~w~~~---A~~L~~~~~vg~Vdc~~~~-----------------~~~~L~~k~~~~~ 210 (689)
.++++.+|.|++|||++|+++.++..+. +..++....+..+++.... ....+++.++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 79 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG--- 79 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC---
Confidence 3678999999999999999999888754 3334434567777766332 1234667776
Q ss_pred ccccccccEEEEcC-CCCCCCCCccccccccCHHHHHHHH
Q 005592 211 IFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 211 ~f~V~gyPTL~~f~-~g~~~~~~~~~Y~G~rs~~~Iv~fv 249 (689)
|.++||++++. +|.. ...+.|-.+.++|.+++
T Consensus 80 ---v~gtPt~~~~d~~G~~----v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 80 ---VNGTPTIVFLDKDGKI----VYRIPGYLSPEELLKML 112 (112)
T ss_dssp -----SSSEEEECTTTSCE----EEEEESS--HHHHHHHH
T ss_pred ---CCccCEEEEEcCCCCE----EEEecCCCCHHHHHhhC
Confidence 99999999996 4542 34578999999998764
No 142
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.51 E-value=1.5e-07 Score=91.96 Aligned_cols=61 Identities=10% Similarity=0.146 Sum_probs=53.0
Q ss_pred cCcccccCcCCC--CCHHHHHHHHHHHHHhcCCCCCCC--c------HHHHHHHHHHHHHcCChhhhhhhh
Q 005592 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--S------TADFLKIQYAYELLTDPLWKRNYD 97 (689)
Q Consensus 37 ~d~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~--~------~~~f~~i~~AyevL~d~~~R~~YD 97 (689)
.|||++||+++. .+..+++++||+|.+++|||+... . .+.-..||+||.+|+||.+|+.|=
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL 72 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 489999999987 789999999999999999997542 2 234788999999999999999994
No 143
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.42 E-value=5.6e-07 Score=87.60 Aligned_cols=92 Identities=10% Similarity=0.158 Sum_probs=71.2
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhh-------------------hhHHHhhCCCCcc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------ATHLAERKPIGQI 211 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~-------------------~~~L~~k~~~~~~ 211 (689)
.+++++|.||++||+.|+...|.+.++++++.+. +.+..|+++.... ...+++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---- 135 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYG---- 135 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcC----
Confidence 4678999999999999999999999999999765 5788888864321 122455555
Q ss_pred cccccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 212 f~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
|.++|+++++.++++ ....+.|..+.+.+.+++.+.
T Consensus 136 --v~~~P~~~lid~~g~---i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 136 --VGPLPTTFLIDKDGK---VVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred --CCCcCeEEEECCCCc---EEEEEeCCCCHHHHHHHHHHh
Confidence 889999988865544 245678999999999988754
No 144
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.38 E-value=4.8e-07 Score=87.29 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCC--------cHHHHHHHHHHHHHcCChhhhhhhhcc
Q 005592 49 SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVY 99 (689)
Q Consensus 49 as~~eIk~ayr~l~~~~HPDk~~~--------~~~~f~~i~~AyevL~d~~~R~~YD~~ 99 (689)
.+..+|+++||+|+++||||+.+. +.+.+..||+||++|+||.+|+.|+.-
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 467899999999999999997432 345699999999999999999999853
No 145
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.35 E-value=8.7e-07 Score=93.14 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=66.9
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhh--------hhhHHHhhCCCCcccccccccEEEEc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIGQIFFRRGLPSLVAF 223 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~--------~~~~L~~k~~~~~~f~V~gyPTL~~f 223 (689)
.+++.||.||++||+.|+.+.|.++++++++. +.|..|+.+... ....+++++| |.++||++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g------V~~vPtl~Lv 236 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLK------IRTVPAVFLA 236 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcC------CCcCCeEEEE
Confidence 46799999999999999999999999999874 344444544211 0123667777 8899999999
Q ss_pred CC-CCCCCCCccccccccCHHHHHHHHHHH
Q 005592 224 PP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 224 ~~-g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
.+ |+. ......|..+.+.|.+.+...
T Consensus 237 ~~~~~~---v~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 237 DPDPNQ---FTPIGFGVMSADELVDRILLA 263 (271)
T ss_pred ECCCCE---EEEEEeCCCCHHHHHHHHHHH
Confidence 87 443 123346889999999988765
No 146
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3.3e-07 Score=90.19 Aligned_cols=84 Identities=20% Similarity=0.274 Sum_probs=69.2
Q ss_pred cCCCCcccc--CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhccc-ceeeeecchhhhhhHHHhhCCCCccccccccc
Q 005592 142 TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFRRGLP 218 (689)
Q Consensus 142 t~~nF~~~I--~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyP 218 (689)
+.+.++..+ +....|+|+||+-|.+.|.+++|.|.+++.++.... ++|+||.+ ...+.+.+++++-.-.-+..|
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG---rfpd~a~kfris~s~~srQLP 207 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG---RFPDVAAKFRISLSPGSRQLP 207 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec---cCcChHHheeeccCcccccCC
Confidence 344455555 567899999999999999999999999999997665 99999999 555578898876555566889
Q ss_pred EEEEcCCCCC
Q 005592 219 SLVAFPPGCK 228 (689)
Q Consensus 219 TL~~f~~g~~ 228 (689)
|+++|..|..
T Consensus 208 T~ilFq~gkE 217 (265)
T KOG0914|consen 208 TYILFQKGKE 217 (265)
T ss_pred eEEEEccchh
Confidence 9999999965
No 147
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.33 E-value=7.9e-07 Score=72.73 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=47.2
Q ss_pred EEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEE
Q 005592 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (689)
Q Consensus 156 ~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~ 222 (689)
-++.||++||++|+.+.+.+++++.. .+.+.+..+|.++++ .++++++ |.++|||++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~-~~~i~~~~id~~~~~---~l~~~~~------i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAAL-NPNISAEMIDAAEFP---DLADEYG------VMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHh-CCceEEEEEEcccCH---hHHHHcC------CcccCEEEE
Confidence 36789999999999999999999765 345688999988554 3788888 889999865
No 148
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.29 E-value=5.5e-07 Score=83.48 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=54.6
Q ss_pred CccccCCCCCEEEEEEcCCCcCCcCchH-HHH--HHHHHHhcccceeeeecchhhhhhHHHhhCC--CCcccccccccEE
Q 005592 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSG-AWK--TIAALLEGIANTGMVELGDIRLATHLAERKP--IGQIFFRRGLPSL 220 (689)
Q Consensus 146 F~~~I~~~~~~LV~FYapwC~~Ck~l~p-~w~--~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~--~~~~f~V~gyPTL 220 (689)
|......++++||.||++||+.|+.+.+ +|. ++++.+.....+.+||.++++. +++.+. ..+.|++.|+||+
T Consensus 8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~---~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPD---VDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcH---HHHHHHHHHHHhcCCCCCCEE
Confidence 4444568899999999999999999987 343 4667776666777889876543 322210 0001338899999
Q ss_pred EEcCCCC
Q 005592 221 VAFPPGC 227 (689)
Q Consensus 221 ~~f~~g~ 227 (689)
+++.+..
T Consensus 85 vfl~~~G 91 (124)
T cd02955 85 VFLTPDL 91 (124)
T ss_pred EEECCCC
Confidence 9997654
No 149
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=8.4e-07 Score=89.55 Aligned_cols=66 Identities=24% Similarity=0.231 Sum_probs=58.6
Q ss_pred ccCcccccCcCC---CCCHHHHHHHHHHHHHhcCCCCC-----CCcHHHHHHHHHHHHHcCChhhhhhhhccCC
Q 005592 36 PPSHYDALGIKP---YSSVEQVKEAYEKFSSKWNSGEE-----IPSTADFLKIQYAYELLTDPLWKRNYDVYGI 101 (689)
Q Consensus 36 ~~d~Y~vLgv~~---~as~~eIk~ayr~l~~~~HPDk~-----~~~~~~f~~i~~AyevL~d~~~R~~YD~~g~ 101 (689)
..|+|.+||++. .++..+|.+|.++.+.+||||+. .++.+-|..|+.||++|+|+.+|..||.-..
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 468999999985 67899999999999999999975 4678889999999999999999999996543
No 150
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.25 E-value=2.7e-06 Score=76.87 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=39.6
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCC
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~ 207 (689)
++++++|.||++||++|+...|.++++++.+.+.+.+..|.-+.......++++++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~ 75 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHG 75 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhC
Confidence 46899999999999999999999999988876545444442111123334666666
No 151
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.23 E-value=2.2e-06 Score=78.53 Aligned_cols=96 Identities=18% Similarity=0.118 Sum_probs=62.6
Q ss_pred ecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhh-----------------hhhHHH
Q 005592 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-----------------LATHLA 203 (689)
Q Consensus 141 Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~-----------------~~~~L~ 203 (689)
++.+++......+++++|.||++||++|+.+.|.+.++++.+. .+.|...+++... ....++
T Consensus 8 ~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (123)
T cd03011 8 LDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVIS 86 (123)
T ss_pred CCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHH
Confidence 3333443333355899999999999999999999999887732 1122211110000 112256
Q ss_pred hhCCCCcccccccccEEEEcCCCCCCCCCccccccccCHHHHHH
Q 005592 204 ERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD 247 (689)
Q Consensus 204 ~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~ 247 (689)
+.++ |.++|+++++.+++. ...+.|..+.++|.+
T Consensus 87 ~~~~------i~~~P~~~vid~~gi----~~~~~g~~~~~~~~~ 120 (123)
T cd03011 87 ARWG------VSVTPAIVIVDPGGI----VFVTTGVTSEWGLRL 120 (123)
T ss_pred HhCC------CCcccEEEEEcCCCe----EEEEeccCCHHHHHh
Confidence 6665 889999999987653 345678888888764
No 152
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.20 E-value=3.8e-06 Score=80.80 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=62.0
Q ss_pred CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhh--h-------hHHH-hhCCCCcccccccccEE
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL--A-------THLA-ERKPIGQIFFRRGLPSL 220 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~--~-------~~L~-~k~~~~~~f~V~gyPTL 220 (689)
...+..+|.|||+||++|++..|..+++++++. +.|..|+.++... . .... ..++. +.|.++||.
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~---~~v~~iPTt 122 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPN---PRPVVTPAT 122 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhcc---CCCCCCCeE
Confidence 345566999999999999999999999998873 3455555553210 0 1111 22210 037899999
Q ss_pred EEcCC-CCCCCCCccccccccCHHHHHHHHHHH
Q 005592 221 VAFPP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 221 ~~f~~-g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
+++.. |.. ....+.|..+.+.+.+.+.+.
T Consensus 123 ~LID~~G~~---i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 123 FLVNVNTRK---AYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEeCCCCE---EEEEeecccCHHHHHHHHHHh
Confidence 99965 332 123468999998888776543
No 153
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.18 E-value=2.9e-06 Score=78.85 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=51.3
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc---cceeeeecchhhh---------------------hhHHHhhCC
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRL---------------------ATHLAERKP 207 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~---~~vg~Vdc~~~~~---------------------~~~L~~k~~ 207 (689)
.++++||.||++||+.|+...|.+.++++++... +.|..|+.+.... ...+++.++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4678999999999999999999999999888643 3455555542211 123555555
Q ss_pred CCcccccccccEEEEcCCCC
Q 005592 208 IGQIFFRRGLPSLVAFPPGC 227 (689)
Q Consensus 208 ~~~~f~V~gyPTL~~f~~g~ 227 (689)
|.++||++++..++
T Consensus 97 ------v~~~P~~~lid~~G 110 (131)
T cd03009 97 ------IEGIPTLIILDADG 110 (131)
T ss_pred ------CCCCCEEEEECCCC
Confidence 88999999997443
No 154
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.14 E-value=5.2e-06 Score=94.08 Aligned_cols=91 Identities=20% Similarity=0.090 Sum_probs=65.2
Q ss_pred CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecc-----hh-h-------------------hhhHHHh
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG-----DI-R-------------------LATHLAE 204 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~-----~~-~-------------------~~~~L~~ 204 (689)
..+++++|.|||+||+.|++..|++++++++++.. +.|..|+.. ++ . ....+++
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak 133 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQ 133 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHH
Confidence 46789999999999999999999999999988632 333333321 00 0 1112445
Q ss_pred hCCCCcccccccccEEEEc-CCCCCCCCCccccccccCHHHHHHHHHH
Q 005592 205 RKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (689)
Q Consensus 205 k~~~~~~f~V~gyPTL~~f-~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k 251 (689)
.++ |+++||++++ ++|.. ...+.|..+.+.|..++..
T Consensus 134 ~fg------V~giPTt~IIDkdGkI----V~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 134 SLN------ISVYPSWAIIGKDGDV----QRIVKGSISEAQALALIRN 171 (521)
T ss_pred HcC------CCCcCeEEEEcCCCeE----EEEEeCCCCHHHHHHHHHH
Confidence 555 9999999666 56643 4567899999999999874
No 155
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.11 E-value=3.6e-06 Score=74.57 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=53.1
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHh-cccceeeeecchh--hhh------------------hHHHhhCCCCc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDI--RLA------------------THLAERKPIGQ 210 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~-~~~~vg~Vdc~~~--~~~------------------~~L~~k~~~~~ 210 (689)
.+++++|.||++||++|+...+.+.++.+.+. ..+.+..|+++.+ ... ..+++.++
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 94 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYG--- 94 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcC---
Confidence 36799999999999999999999999999886 3458899998853 111 12444444
Q ss_pred ccccccccEEEEcCCC
Q 005592 211 IFFRRGLPSLVAFPPG 226 (689)
Q Consensus 211 ~f~V~gyPTL~~f~~g 226 (689)
+.++|+++++.++
T Consensus 95 ---~~~~P~~~l~d~~ 107 (116)
T cd02966 95 ---VRGLPTTFLIDRD 107 (116)
T ss_pred ---cCccceEEEECCC
Confidence 8899999888644
No 156
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.11 E-value=5e-06 Score=77.61 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=52.2
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc---cceeeeecchhh-hhhHHHhhCC---------------CCccc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIR-LATHLAERKP---------------IGQIF 212 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~---~~vg~Vdc~~~~-~~~~L~~k~~---------------~~~~f 212 (689)
.+++++|.||++||++|+...|.+.++++.+... +.+..|+++... .....+++++ +.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4689999999999999999999999999988753 356666665332 1111222221 01135
Q ss_pred ccccccEEEEcCCCC
Q 005592 213 FRRGLPSLVAFPPGC 227 (689)
Q Consensus 213 ~V~gyPTL~~f~~g~ 227 (689)
+|.++||++++..++
T Consensus 96 ~v~~iPt~~lid~~G 110 (132)
T cd02964 96 KVEGIPTLVVLKPDG 110 (132)
T ss_pred CCCCCCEEEEECCCC
Confidence 599999999996543
No 157
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.08 E-value=4e-06 Score=77.48 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=54.7
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchh-hhh-------------------hHHHhhCCCCcc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-RLA-------------------THLAERKPIGQI 211 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~-~~~-------------------~~L~~k~~~~~~ 211 (689)
.+++++|.||++||++|+...|.++++++... +.|..|+.+.. ... ..+++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~------ 95 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGID------ 95 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHh------
Confidence 46799999999999999999999999987752 44555543211 011 113344
Q ss_pred cccccccEEEEc-CCCCCCCCCccccccccCHHHH
Q 005592 212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAV 245 (689)
Q Consensus 212 f~V~gyPTL~~f-~~g~~~~~~~~~Y~G~rs~~~I 245 (689)
|+|.++|+.+++ ++|.. ...|.|..+.+.|
T Consensus 96 ~~v~~~P~~~~ld~~G~v----~~~~~G~~~~~~~ 126 (127)
T cd03010 96 LGVYGVPETFLIDGDGII----RYKHVGPLTPEVW 126 (127)
T ss_pred cCCCCCCeEEEECCCceE----EEEEeccCChHhc
Confidence 448899965555 56643 4567788776654
No 158
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.07 E-value=9.3e-06 Score=70.87 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=59.8
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCC
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~ 231 (689)
++.+-+..|++|||++|..+.+.+++++... +.+.+..+|.++. ..++++++ |.++||+++ +|.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~~---~e~a~~~~------V~~vPt~vi--dG~---- 74 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGALF---QDEVEERG------IMSVPAIFL--NGE---- 74 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHhC---HHHHHHcC------CccCCEEEE--CCE----
Confidence 3455788999999999999999999999764 4578999998844 34889988 889999975 664
Q ss_pred CccccccccCHHHHH
Q 005592 232 CMTRFEGELSVDAVT 246 (689)
Q Consensus 232 ~~~~Y~G~rs~~~Iv 246 (689)
..+.|..+.+.++
T Consensus 75 --~~~~G~~~~~e~~ 87 (89)
T cd03026 75 --LFGFGRMTLEEIL 87 (89)
T ss_pred --EEEeCCCCHHHHh
Confidence 3456866666654
No 159
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.00 E-value=1.5e-05 Score=74.28 Aligned_cols=100 Identities=9% Similarity=0.067 Sum_probs=81.1
Q ss_pred EecCCCCccccCCCCCEEEEEEcC--CCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhCCCCccccccc
Q 005592 140 VVTSEDFPSIFHDSKPWLIQVYSD--GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (689)
Q Consensus 140 ~Lt~~nF~~~I~~~~~~LV~FYap--wC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~g 216 (689)
.++..+++..+......++.|-.+ -+..+...+=+.+++++++.+. +++++||+++++. |+.+|| |++
T Consensus 21 ~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~---LA~~fg------V~s 91 (132)
T PRK11509 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA---IGDRFG------VFR 91 (132)
T ss_pred ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH---HHHHcC------Ccc
Confidence 355567777776666666666654 3677888999999999999744 7999999996654 999998 889
Q ss_pred ccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 217 yPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
+|||++|++|.. .....|.++.+.+.+|+.+.
T Consensus 92 iPTLl~FkdGk~----v~~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 92 FPATLVFTGGNY----RGVLNGIHPWAELINLMRGL 123 (132)
T ss_pred CCEEEEEECCEE----EEEEeCcCCHHHHHHHHHHH
Confidence 999999999974 45678999999999999877
No 160
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=6.4e-06 Score=95.65 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=47.4
Q ss_pred ccCcccccCcCCC----CCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCC
Q 005592 36 PPSHYDALGIKPY----SSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTD 89 (689)
Q Consensus 36 ~~d~Y~vLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~AyevL~d 89 (689)
..+-|+||.|+-+ -..+.||++|+|||.+|||||||...++|.++++|||.|+.
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence 3478999998743 34588999999999999999999999999999999999983
No 161
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.90 E-value=1.6e-05 Score=77.86 Aligned_cols=95 Identities=21% Similarity=0.197 Sum_probs=62.6
Q ss_pred CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecch-hhhhhHHHhhCC-------------CCccccccc
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD-IRLATHLAERKP-------------IGQIFFRRG 216 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~-~~~~~~L~~k~~-------------~~~~f~V~g 216 (689)
..+++++|.||++||++|++..|.++++++. + +.+..|+.++ .......+++++ +.+.|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~-~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--G-LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--C-CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 3578999999999999999999999888653 2 4455555321 111111222211 112456889
Q ss_pred ccEEEEc-CCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 217 LPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 217 yPTL~~f-~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
+|+.+++ ++|.. ...+.|..+.+++.+++...
T Consensus 138 ~P~~~~id~~G~i----~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 138 APETFLVDGNGVI----LYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CCeEEEEcCCceE----EEEEeccCCHHHHHHHHHHH
Confidence 9965555 66653 34567989999999988765
No 162
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.88 E-value=2.3e-05 Score=71.31 Aligned_cols=98 Identities=8% Similarity=0.172 Sum_probs=70.1
Q ss_pred CCcccc----CCCCCEEEEEEcCCCcCCcCchH-HHH--HHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccc
Q 005592 145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSG-AWK--TIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (689)
Q Consensus 145 nF~~~I----~~~~~~LV~FYapwC~~Ck~l~p-~w~--~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gy 217 (689)
+|++.+ ..+++++|.||++||..|+.+.. .|. ++.+.++....+.++|.++. ....++..++ +.++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~------~~~~ 77 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYK------VDKY 77 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhC------ccCC
Confidence 344454 36889999999999999999875 453 44556655445555666532 2234788887 8899
Q ss_pred cEEEEcCC-CCCCCCCccccccccCHHHHHHHHHHH
Q 005592 218 PSLVAFPP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 218 PTL~~f~~-g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
|++.++.+ +.. ....+.|..+++.+...+.+.
T Consensus 78 P~~~~i~~~~g~---~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 78 PHIAIIDPRTGE---VLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred CeEEEEeCccCc---EeEEEcCCCCHHHHHHHHHHH
Confidence 99999965 332 245678999999999888765
No 163
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.87 E-value=0.00011 Score=67.13 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=68.2
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEe--CCCCCCcHHHHHHHHhccc---CceEEEEEecc---cccHHHHhhcCCC--CC
Q 005592 262 YTKESMGKNFLAKTGPHKVKVIFFS--KTGERASPFVRQISRNYWA---YASFAFVLWRE---EESSIWWNTFEVE--SA 331 (689)
Q Consensus 262 it~~~~~~~Fl~~~~~~k~~Vl~f~--~~~~~~~~~~~~~A~~~~~---~~~f~~V~~~~---~~s~~l~~~f~V~--~~ 331 (689)
+++.+ +++++.... .+.|-|+. .-+.. .+.++.+|.+|.. .+.++.|...+ .+..+|+++|+|+ ++
T Consensus 6 L~~~n-F~~~v~~~~--~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 6 LDTVT-FYKVIPKFK--YSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred CChhh-HHHHHhcCC--cEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 44444 566775432 25555666 54433 4667777766633 46678886532 2236799999999 89
Q ss_pred CEEEEEeCC-CCCceeecCC-CChHHHHHHHHhc
Q 005592 332 PAIVFLKDP-GVKPVVYYGS-FNNSRLSEVMEQN 363 (689)
Q Consensus 332 PtIvvfk~~-~~~p~~y~g~-~~~~~L~~fI~~~ 363 (689)
|||.+|+++ ...|..|.|. .+.+.|.+||+++
T Consensus 82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999987 3467789996 9999999999875
No 164
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.8e-05 Score=78.27 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=47.7
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHHHHH-HcCC
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYE-LLTD 89 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~--~~~~~f~~i~~Aye-vL~d 89 (689)
..||.+|||..+|+..+++.||.+|++++|||... ..+++|.+|.+||. ||+.
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999999654 56788999999998 7764
No 165
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.85 E-value=3.4e-05 Score=76.51 Aligned_cols=94 Identities=18% Similarity=0.134 Sum_probs=63.1
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhh-hhhHHHhhCCC-------------Ccccccccc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPI-------------GQIFFRRGL 217 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~-~~~~L~~k~~~-------------~~~f~V~gy 217 (689)
.+++++|.||++||++|++..|.+.++++. + +.|..|+.+++. ......++++. .+.|+|.++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~-~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--C-CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 578999999999999999999999888642 2 355556643221 11112222221 114669999
Q ss_pred cEEEEc-CCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 218 PSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 218 PTL~~f-~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
|+.+++ ++|.. ...+.|..+.+.+.+++...
T Consensus 144 P~t~vid~~G~i----~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 144 PETFLIDGNGII----RYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred CeEEEECCCceE----EEEEecCCCHHHHHHHHHHH
Confidence 976666 56643 45678999988888888766
No 166
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.82 E-value=2.5e-05 Score=74.51 Aligned_cols=76 Identities=17% Similarity=0.176 Sum_probs=52.3
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc--------cceeeeecchhhh-hhHHHhhCCC--------------
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--------ANTGMVELGDIRL-ATHLAERKPI-------------- 208 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~--------~~vg~Vdc~~~~~-~~~L~~k~~~-------------- 208 (689)
.+++++|.|+|+||+.|++..|...++.+.+.+. +.+..|+.+++.. .....++.++
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4689999999999999999999999988877532 4666666553221 2223333321
Q ss_pred -CcccccccccEEEEcCCCC
Q 005592 209 -GQIFFRRGLPSLVAFPPGC 227 (689)
Q Consensus 209 -~~~f~V~gyPTL~~f~~g~ 227 (689)
.+.|.|.++||++++.+..
T Consensus 104 l~~~y~v~~iPt~vlId~~G 123 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDG 123 (146)
T ss_pred HHHHcCCCCCCEEEEECCCC
Confidence 1145588999999987543
No 167
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.78 E-value=2.9e-05 Score=67.81 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=50.6
Q ss_pred CCCEEEEEEcCCCcCCcCchHHHHHHHHHHh--cccceeeeecchhhh-hhHHHhhCCC---------------Cccccc
Q 005592 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRL-ATHLAERKPI---------------GQIFFR 214 (689)
Q Consensus 153 ~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~--~~~~vg~Vdc~~~~~-~~~L~~k~~~---------------~~~f~V 214 (689)
+++++|.|||+||++|++..|...++.+.+. ..+.+..|++++... .....++.+. .+.|.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4789999999999999999999999999998 556888888774321 1112222210 125668
Q ss_pred ccccEEEEcCCC
Q 005592 215 RGLPSLVAFPPG 226 (689)
Q Consensus 215 ~gyPTL~~f~~g 226 (689)
+++|+++++.++
T Consensus 81 ~~iP~~~lld~~ 92 (95)
T PF13905_consen 81 NGIPTLVLLDPD 92 (95)
T ss_dssp TSSSEEEEEETT
T ss_pred CcCCEEEEECCC
Confidence 899998888654
No 168
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.75 E-value=0.00024 Score=65.55 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=66.3
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEeCC------CC--CCcHHHHHHHHhc--ccCceEEEEEecccccHHHHhhcCCCCC
Q 005592 262 YTKESMGKNFLAKTGPHKVKVIFFSKT------GE--RASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESA 331 (689)
Q Consensus 262 it~~~~~~~Fl~~~~~~k~~Vl~f~~~------~~--~~~~~~~~~A~~~--~~~~~f~~V~~~~~~s~~l~~~f~V~~~ 331 (689)
+|+.+ +++.+... ..+.|++|... +. .+.|.+..+|..+ ...+.|+.|.... ..+++++|+|.+.
T Consensus 14 lt~~n-F~~~v~~~--~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~i 88 (120)
T cd03065 14 LNEKN-YKQVLKKY--DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDEE 88 (120)
T ss_pred CChhh-HHHHHHhC--CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCccc
Confidence 44444 45555432 34777777431 32 3445566677776 6678888887543 4789999999999
Q ss_pred CEEEEEeCCCCCceeecCCCChHHHHHHHHh
Q 005592 332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 332 PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~ 362 (689)
|||++|+++. ++.|.|..+.+.|.+||.+
T Consensus 89 PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 89 DSIYVFKDDE--VIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred cEEEEEECCE--EEEeeCCCCHHHHHHHHHH
Confidence 9999999764 3458999999999999874
No 169
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.74 E-value=5.9e-05 Score=74.25 Aligned_cols=88 Identities=11% Similarity=0.068 Sum_probs=60.6
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhh----------hhhHHHhhCCCCcccccccccEEEEcCCC
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~----------~~~~L~~k~~~~~~f~V~gyPTL~~f~~g 226 (689)
+|.||++||++|++..|..+++++++. +.|-.|+.++.. ....+...++.- +.++||.+++...
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~----~~~iPttfLId~~ 146 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNI----PVATPTTFLVNVN 146 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCC----CCCCCeEEEEeCC
Confidence 788999999999999999999999974 444445555321 111133444410 2699999999554
Q ss_pred CCCCCCccccccccCHHHHHHHHHHH
Q 005592 227 CKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 227 ~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
.+. ....+.|..+.++|.+.+...
T Consensus 147 G~i--~~~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 147 TLE--ALPLLQGATDAAGFMARMDTV 170 (181)
T ss_pred CcE--EEEEEECCCCHHHHHHHHHHH
Confidence 331 123578999999998877766
No 170
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.72 E-value=8.5e-05 Score=65.19 Aligned_cols=96 Identities=25% Similarity=0.402 Sum_probs=68.1
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEeCC-C---CCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEE
Q 005592 262 YTKESMGKNFLAKTGPHKVKVIFFSKT-G---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (689)
Q Consensus 262 it~~~~~~~Fl~~~~~~k~~Vl~f~~~-~---~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvf 337 (689)
+|.++ +++.+.. .+++.+|+|... + ....+.+..++..+.+.+.|+.|... +...++++|+|...|++++|
T Consensus 4 lt~~~-f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 4 LTDEN-FEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp ESTTT-HHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEEE
T ss_pred CCHHH-HHHHHHc--cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhhhccCCCCCCEEEEE
Confidence 34444 5555554 245666666432 1 22346666788888777788888643 34789999999999999999
Q ss_pred eCCCCCceeecCCCChHHHHHHHHhc
Q 005592 338 KDPGVKPVVYYGSFNNSRLSEVMEQN 363 (689)
Q Consensus 338 k~~~~~p~~y~g~~~~~~L~~fI~~~ 363 (689)
+++... ..|.|..+.+.|.+||++|
T Consensus 79 ~~g~~~-~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEV-KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEE-EEEESSSSHHHHHHHHHHH
T ss_pred ECCcEE-EEEECCCCHHHHHHHHHcC
Confidence 986543 3689999999999999875
No 171
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.69 E-value=3.4e-05 Score=65.97 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=47.0
Q ss_pred CCCCCEEEEEEcCCCcCCcCchHHH---HHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcC
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p~w---~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~ 224 (689)
..++++||.||++||+.|+.+.... .++.+.+........||.++..... .+. ..++|+++++.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~----~~~------~~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA----QFD------RQGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH----HHH------HCSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH----HhC------CccCCEEEEeC
Confidence 4789999999999999999998876 4555556666788888887443321 111 34899999874
No 172
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.68 E-value=6.4e-05 Score=58.21 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=48.2
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCC
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g 226 (689)
++.||++||++|+++.+.+.++ ......+.+..++|+...........++ +.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYG------VGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCC------CccccEEEEEeCC
Confidence 5789999999999999999988 4455567999999995544221113445 7799999999876
No 173
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.66 E-value=7.9e-05 Score=92.19 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=67.5
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecc---h--h-hhhhHHHhhCCC------------Cccc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG---D--I-RLATHLAERKPI------------GQIF 212 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~---~--~-~~~~~L~~k~~~------------~~~f 212 (689)
.+++++|.|||+||+.|++..|.++++++++++. +.|..|.+. + . ........++++ .+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4789999999999999999999999999998764 344444321 1 1 011111122221 1134
Q ss_pred ccccccEEEEc-CCCCCCCCCccccccccCHHHHHHHHHHHh
Q 005592 213 FRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (689)
Q Consensus 213 ~V~gyPTL~~f-~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~v 253 (689)
.|.++||+++| ++|.. ...+.|....+.|.+++...+
T Consensus 499 ~V~~iPt~ilid~~G~i----v~~~~G~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKL----IAQLSGEGHRKDLDDLVEAAL 536 (1057)
T ss_pred CCCccceEEEECCCCeE----EEEEecccCHHHHHHHHHHHH
Confidence 59999999999 56653 345789888899999988763
No 174
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.64 E-value=6.8e-05 Score=84.63 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=70.6
Q ss_pred CCccccCC--CCCEEEEEEcCCCcCCcCchH-HHHHHHHHHhc-ccceeeeecch-hhhhhHHHhhCCCCcccccccccE
Q 005592 145 DFPSIFHD--SKPWLIQVYSDGSYLCGQFSG-AWKTIAALLEG-IANTGMVELGD-IRLATHLAERKPIGQIFFRRGLPS 219 (689)
Q Consensus 145 nF~~~I~~--~~~~LV~FYapwC~~Ck~l~p-~w~~~A~~L~~-~~~vg~Vdc~~-~~~~~~L~~k~~~~~~f~V~gyPT 219 (689)
..++.+.+ ++|++|.|||+||-.||.+++ .+.+.....+- .+..-++|.|+ +....++-++++ +-|.|+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~------~~G~P~ 537 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLG------VFGVPT 537 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcC------CCCCCE
Confidence 44555533 459999999999999999987 34332222222 23777889884 445555667777 889999
Q ss_pred EEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 220 L~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
+++|..+... +..-.|-.+++.+.+++++.
T Consensus 538 ~~ff~~~g~e---~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 538 YLFFGPQGSE---PEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEECCCCCc---CcCCcceecHHHHHHHHHHh
Confidence 9999965542 33368999999999999875
No 175
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.61 E-value=0.00026 Score=62.84 Aligned_cols=80 Identities=14% Similarity=0.115 Sum_probs=58.6
Q ss_pred cEEEEEE-eCC---CCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCC-h
Q 005592 279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN-N 353 (689)
Q Consensus 279 k~~Vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~-~ 353 (689)
++.+|.| .+. +....+.+..++..+...+.|+.|.... ...++++|+|.+.||+++|++++.....|.|..+ .
T Consensus 20 ~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~ 97 (104)
T cd03004 20 EPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDA 97 (104)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCH
Confidence 3555544 432 2234677777888887777888876432 3679999999999999999987566777899876 8
Q ss_pred HHHHHHH
Q 005592 354 SRLSEVM 360 (689)
Q Consensus 354 ~~L~~fI 360 (689)
+.|.+||
T Consensus 98 ~~l~~~i 104 (104)
T cd03004 98 DSILEFI 104 (104)
T ss_pred HHHHhhC
Confidence 8888874
No 176
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.53 E-value=0.00041 Score=61.94 Aligned_cols=92 Identities=11% Similarity=0.142 Sum_probs=64.3
Q ss_pred hhhhhhhcCCCcEEEEEE-eCC---CCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCC--
Q 005592 268 GKNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-- 341 (689)
Q Consensus 268 ~~~Fl~~~~~~k~~Vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~-- 341 (689)
+++.+.. .+++.+|.| .+. +....+.+..++..+...+.|+.+.........++++|+|...|++++|+++.
T Consensus 10 ~~~~i~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 87 (109)
T cd03002 10 FDKVVHN--TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKA 87 (109)
T ss_pred HHHHHhc--CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcc
Confidence 4455443 245555555 332 23345677778888776777777765443346799999999999999999875
Q ss_pred --CCceeecCCCChHHHHHHHH
Q 005592 342 --VKPVVYYGSFNNSRLSEVME 361 (689)
Q Consensus 342 --~~p~~y~g~~~~~~L~~fI~ 361 (689)
..+..|.|..+.+.|.+||.
T Consensus 88 ~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 88 SKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred cccccccccCccCHHHHHHHhC
Confidence 34556899999999999973
No 177
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.52 E-value=0.00023 Score=65.81 Aligned_cols=74 Identities=14% Similarity=0.048 Sum_probs=49.3
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecc------hhhhhhHHHhhCCCC------------ccc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG------DIRLATHLAERKPIG------------QIF 212 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~------~~~~~~~L~~k~~~~------------~~f 212 (689)
.+++++|.||+.||+.|.+..|.++++.++++.. +.+..|++. ........+++.++. +.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 4579999999999999999999999999998754 355556542 111222234444321 135
Q ss_pred ccccccEEEEcCC
Q 005592 213 FRRGLPSLVAFPP 225 (689)
Q Consensus 213 ~V~gyPTL~~f~~ 225 (689)
.+.++|+.+++.+
T Consensus 102 ~v~~~P~~~vid~ 114 (126)
T cd03012 102 GNQYWPALYLIDP 114 (126)
T ss_pred CCCcCCeEEEECC
Confidence 5777777777743
No 178
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.51 E-value=0.00059 Score=59.77 Aligned_cols=91 Identities=21% Similarity=0.325 Sum_probs=62.7
Q ss_pred cchhhhhhhhhcCCCcEEEE-EEeCCCCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCC
Q 005592 264 KESMGKNFLAKTGPHKVKVI-FFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (689)
Q Consensus 264 ~~~~~~~Fl~~~~~~k~~Vl-~f~~~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~ 342 (689)
+.+.++.|+.. +.+.|| +|.+........+..+|..+++.+.|+.+. ...+.+++++. .|++++|++.+.
T Consensus 6 s~~~l~~~~~~---~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~~~ 76 (97)
T cd02981 6 SKEELEKFLDK---DDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTS-----DKEVAKKLKVK-PGSVVLFKPFEE 76 (97)
T ss_pred CHHHHHHHhcc---CCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEC-----hHHHHHHcCCC-CCceEEeCCccc
Confidence 33335566653 234454 554433223455566888888788888875 34577778875 589999998777
Q ss_pred CceeecCCCChHHHHHHHHhc
Q 005592 343 KPVVYYGSFNNSRLSEVMEQN 363 (689)
Q Consensus 343 ~p~~y~g~~~~~~L~~fI~~~ 363 (689)
.++.|.|.++.+.|.+||..|
T Consensus 77 ~~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 77 EPVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred CCccCCCCCCHHHHHHHHHhC
Confidence 788899998889999999753
No 179
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.48 E-value=0.00052 Score=70.65 Aligned_cols=98 Identities=9% Similarity=-0.084 Sum_probs=66.1
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhccc-ceeeeecc--------hhhhhhHHH-hhCCCCcc----------
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--------DIRLATHLA-ERKPIGQI---------- 211 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~--------~~~~~~~L~-~k~~~~~~---------- 211 (689)
.+++++|.||++||+.|....|.+.++.++++..+ .|..|+|+ ........+ +++++.=+
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 46899999999999999999999999999997663 78888874 112223333 34332100
Q ss_pred -----cc-------------cccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 212 -----FF-------------RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 212 -----f~-------------V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
|. |.+.||.+++-...+ ....|.|..+.++|.+.+.+.
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~Gk---Vv~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGK---VVERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCc---EEEEECCCCCHHHHHHHHHHH
Confidence 10 233577777744333 246678888888888877665
No 180
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.47 E-value=0.00057 Score=60.46 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=56.9
Q ss_pred cEEEEEE-eCC---CCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChH
Q 005592 279 KVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (689)
Q Consensus 279 k~~Vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~ 354 (689)
++.+|.| .+. +....+.+..+|..+.+.+.|+.|.... ...++++|+|..+||+++|+++. ....|.|..+.+
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~~ 95 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD--DRMLCRSQGVNSYPSLYVFPSGM-NPEKYYGDRSKE 95 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc--cHHHHHHcCCCccCEEEEEcCCC-CcccCCCCCCHH
Confidence 4555544 432 2334677778888887777788776433 36799999999999999998653 455688998988
Q ss_pred HHHHH
Q 005592 355 RLSEV 359 (689)
Q Consensus 355 ~L~~f 359 (689)
.|.+|
T Consensus 96 ~l~~f 100 (101)
T cd03003 96 SLVKF 100 (101)
T ss_pred HHHhh
Confidence 88876
No 181
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.47 E-value=0.00046 Score=62.97 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=58.8
Q ss_pred CCcEEEEEE-eC---CCCCCcHHHHHHHHhcccCceEEEEEecccccHHHH-hhcCCCCCCEEEEEeCCCCCceeecCCC
Q 005592 277 PHKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWW-NTFEVESAPAIVFLKDPGVKPVVYYGSF 351 (689)
Q Consensus 277 ~~k~~Vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~-~~f~V~~~PtIvvfk~~~~~p~~y~g~~ 351 (689)
.+++.+|.| .+ .+....|.+..+|..|.+.+.|+.|.... ...++ ++|+|.++|||++|+++. .+..|.|..
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~--~~~l~~~~~~I~~~PTl~lf~~g~-~~~~y~G~~ 104 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW--PQGKCRKQKHFFYFPVIHLYYRSR-GPIEYKGPM 104 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC--ChHHHHHhcCCcccCEEEEEECCc-cceEEeCCC
Confidence 345555544 33 23335677888888888777788885322 35677 589999999999998754 577899999
Q ss_pred ChHHHHHHH
Q 005592 352 NNSRLSEVM 360 (689)
Q Consensus 352 ~~~~L~~fI 360 (689)
+.+.|..|+
T Consensus 105 ~~~~i~~~~ 113 (113)
T cd03006 105 RAPYMEKFV 113 (113)
T ss_pred CHHHHHhhC
Confidence 999888773
No 182
>smart00594 UAS UAS domain.
Probab=97.46 E-value=0.00031 Score=64.89 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=63.8
Q ss_pred CCCCCEEEEEEcCCCcCCcCchH-HHH--HHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCC
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSG-AWK--TIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p-~w~--~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~ 227 (689)
..+++.+|.||++||..|+.+.. +|. ++.+.++....+-.+|.+.... ..++..++ +.++|++.++.+..
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg-~~l~~~~~------~~~~P~~~~l~~~~ 97 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG-QRVSQFYK------LDSFPYVAIVDPRT 97 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH-HHHHHhcC------cCCCCEEEEEecCC
Confidence 46789999999999999999875 343 3344555544555667664433 34888888 88999999995442
Q ss_pred -CC-CCCccccccccCHHHHHHHH
Q 005592 228 -KS-SDCMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 228 -~~-~~~~~~Y~G~rs~~~Iv~fv 249 (689)
.. ........|..+++.|+.++
T Consensus 98 g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 98 GQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CceeEEEeccccCCCCHHHHHHhh
Confidence 10 01133568999999998875
No 183
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.43 E-value=0.0003 Score=57.58 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=49.9
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhh-hhHHHhhCCCCcccccccccEEEEcCCCCCCCCCccc
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~-~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~ 235 (689)
+..||++||++|++..+.+++. .+.+..+|.+++.. ...+++.++ +.++|+|++. |. .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~------~~~vP~~~~~--~~-------~ 60 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLG------QRGVPVIVIG--HK-------I 60 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhC------CCcccEEEEC--CE-------E
Confidence 4689999999999988877652 24677888875433 233566677 7799999985 32 2
Q ss_pred cccccCHHHHHHHH
Q 005592 236 FEGELSVDAVTDWF 249 (689)
Q Consensus 236 Y~G~rs~~~Iv~fv 249 (689)
..| .+.+.|.+|+
T Consensus 61 ~~g-~~~~~i~~~i 73 (74)
T TIGR02196 61 IVG-FDPEKLDQLL 73 (74)
T ss_pred Eee-CCHHHHHHHh
Confidence 345 4667777775
No 184
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.40 E-value=0.00058 Score=68.03 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=55.0
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCC-----------cccccccccEE
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIG-----------QIFFRRGLPSL 220 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~-----------~~f~V~gyPTL 220 (689)
.+++++|.||++||+.|+...|...++.+... ..+..|+.+........++++++. +.|++.+.|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 56789999999999999999999998876542 233333333222222334433321 25668899987
Q ss_pred EEcCCCCCCCCCccccccc-cCHHHHHHHHH
Q 005592 221 VAFPPGCKSSDCMTRFEGE-LSVDAVTDWFA 250 (689)
Q Consensus 221 ~~f~~g~~~~~~~~~Y~G~-rs~~~Iv~fv~ 250 (689)
+++-+.+. ..+.|. .+.+.+-+.+.
T Consensus 151 ~lID~~G~-----I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 151 VLLDQDGK-----IRAKGLTNTREHLESLLE 176 (189)
T ss_pred EEECCCCe-----EEEccCCCCHHHHHHHHH
Confidence 77654332 334553 23344444443
No 185
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.40 E-value=0.0012 Score=58.91 Aligned_cols=95 Identities=13% Similarity=0.185 Sum_probs=65.4
Q ss_pred cccchhhhhhhh-hcCCCcEEEEEEeCCCCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCC
Q 005592 262 YTKESMGKNFLA-KTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (689)
Q Consensus 262 it~~~~~~~Fl~-~~~~~k~~Vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~ 340 (689)
+++.+.++.|+. ... .++|.+|.+........+..+|..+++.+.|+... ...+.+.+++. .|+|+++++.
T Consensus 5 i~~~~~~e~~~~~~~~--~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~ 76 (102)
T cd03066 5 INSERELQAFENIEDD--IKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATF-----DSKVAKKLGLK-MNEVDFYEPF 76 (102)
T ss_pred cCCHHHHHHHhcccCC--eEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEEC-----cHHHHHHcCCC-CCcEEEeCCC
Confidence 444444788886 432 34444555433222345566888888888887764 34577888875 7999999886
Q ss_pred CCCceee-cCCCChHHHHHHHHhcC
Q 005592 341 GVKPVVY-YGSFNNSRLSEVMEQNK 364 (689)
Q Consensus 341 ~~~p~~y-~g~~~~~~L~~fI~~~k 364 (689)
++.++.| .|..+.+.|.+||..++
T Consensus 77 ~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 77 MEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCcccCCCCCCHHHHHHHHHHhc
Confidence 7777779 88889999999998765
No 186
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.35 E-value=0.00093 Score=59.88 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=60.6
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEe-CC---CCCCcHHHHHHHHhccc------CceEEEEEecccccHHHHhhcCCCCC
Q 005592 262 YTKESMGKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWA------YASFAFVLWREEESSIWWNTFEVESA 331 (689)
Q Consensus 262 it~~~~~~~Fl~~~~~~k~~Vl~f~-~~---~~~~~~~~~~~A~~~~~------~~~f~~V~~~~~~s~~l~~~f~V~~~ 331 (689)
++.++ +++.++ .+++.+|.|. +- +....+.+..++..+++ .+.|+.|.... ...++++|+|+++
T Consensus 6 l~~~~-f~~~i~---~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~ 79 (108)
T cd02996 6 LTSGN-IDDILQ---SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK--ESDIADRYRINKY 79 (108)
T ss_pred cCHhh-HHHHHh---cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--CHHHHHhCCCCcC
Confidence 44444 455553 2346566553 32 23345666666665432 35566665322 3689999999999
Q ss_pred CEEEEEeCCCCCceeecCCCChHHHHHHH
Q 005592 332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (689)
Q Consensus 332 PtIvvfk~~~~~p~~y~g~~~~~~L~~fI 360 (689)
|++++|+++......|.|..+.+.|.+||
T Consensus 80 Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 80 PTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999998664456688999999998885
No 187
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.30 E-value=0.0015 Score=58.65 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=62.3
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEeCCCCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEE----
Q 005592 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL---- 337 (689)
Q Consensus 262 it~~~~~~~Fl~~~~~~k~~Vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvf---- 337 (689)
+++.+.++.|+... ..++|.||.+........+..+|..+++.+.|+... ...+.+++++ .|++++|
T Consensus 5 i~s~~~l~~f~~~~--~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 5 LRTEAEFEKFLSDD--DASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTS-----DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred cCCHHHHHHHhccC--CcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEC-----hHHHHHhcCC--CCceEEEechh
Confidence 33334467777632 234444555433223445566888888888887764 3457888988 6888888
Q ss_pred --eCCCCCceeecCCCChHHHHHHHHhc
Q 005592 338 --KDPGVKPVVYYGSFNNSRLSEVMEQN 363 (689)
Q Consensus 338 --k~~~~~p~~y~g~~~~~~L~~fI~~~ 363 (689)
+..+...+.|.|+++.+.|.+||..+
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 44556666799999989999999875
No 188
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.28 E-value=0.0014 Score=57.68 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=52.6
Q ss_pred CcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHH
Q 005592 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI 360 (689)
..+.+..++..+...+.|+.+... +...++++|+|.+.|++++|+.+...+..|.|..+.+.|.+|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 36 LAPEWKKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred HhHHHHHHHHHhcCCceEEEEECc--chHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 356666677777667777777532 2467999999999999999987755666789999999999986
No 189
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00051 Score=60.55 Aligned_cols=49 Identities=24% Similarity=0.206 Sum_probs=43.4
Q ss_pred cccCcCCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCCh
Q 005592 41 DALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDP 90 (689)
Q Consensus 41 ~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~AyevL~d~ 90 (689)
.||||+++++.+.||+|+||.....|||+. +..-.-.+||+|+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~G-GSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRG-GSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCC-CCHHHHHHHHHHHHHHhcc
Confidence 399999999999999999999999999987 5555667899999999753
No 190
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.23 E-value=0.0012 Score=59.57 Aligned_cols=92 Identities=10% Similarity=0.117 Sum_probs=59.3
Q ss_pred hhhhhhhcCCCcEEEEEE-eCC---CCCCcHHHHHHHHhcccC-ceEEEEEecccccHHHHh-hcCCCCCCEEEEEeCCC
Q 005592 268 GKNFLAKTGPHKVKVIFF-SKT---GERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIVFLKDPG 341 (689)
Q Consensus 268 ~~~Fl~~~~~~k~~Vl~f-~~~---~~~~~~~~~~~A~~~~~~-~~f~~V~~~~~~s~~l~~-~f~V~~~PtIvvfk~~~ 341 (689)
++........+++.+|.| .+. +....+.+..++..|.+. +.++.|.... +...++. .|+|..+||+++|++++
T Consensus 11 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-~~~~~~~~~~~v~~~Pti~~f~~~~ 89 (109)
T cd02993 11 IEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-EQREFAKEELQLKSFPTILFFPKNS 89 (109)
T ss_pred HHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-cchhhHHhhcCCCcCCEEEEEcCCC
Confidence 444443222345555555 332 233456677788777653 5666665322 1245665 59999999999999877
Q ss_pred CCceeecCC-CChHHHHHHH
Q 005592 342 VKPVVYYGS-FNNSRLSEVM 360 (689)
Q Consensus 342 ~~p~~y~g~-~~~~~L~~fI 360 (689)
..+..|.|+ .+..+|..||
T Consensus 90 ~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 90 RQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCceeccCCCCCHHHHHhhC
Confidence 777789985 7888888875
No 191
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.16 E-value=0.00052 Score=59.90 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=52.5
Q ss_pred CCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecc-hhhhhhHHHhhCCCCcccccccccEEEEcCCCC
Q 005592 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (689)
Q Consensus 153 ~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~-~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~ 227 (689)
..+.+|.||++||++|+.+.|...++++.+...+.+..+|.. .++. +...++. .+..+|++.++.++.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~----~~~~~p~~~~~~~~~ 100 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPD---LAAEFGV----AVRSIPTLLLFKDGK 100 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChH---HHHHHhh----hhccCCeEEEEeCcc
Confidence 778999999999999999999999999998776677777775 3333 3444431 156889999888774
No 192
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.16 E-value=0.002 Score=64.85 Aligned_cols=57 Identities=7% Similarity=0.109 Sum_probs=44.3
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhccc-ceeeeecc--------hhhhhhHHHhhCCC
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG--------DIRLATHLAERKPI 208 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~--------~~~~~~~L~~k~~~ 208 (689)
.++++||.|+|+||+.|.+-.|...++.+++.+.+ .|..|+|+ ........++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~ 103 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI 103 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC
Confidence 46799999999999999999999999999997664 78888873 12234445666653
No 193
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.15 E-value=0.001 Score=63.64 Aligned_cols=42 Identities=7% Similarity=-0.154 Sum_probs=35.4
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~ 194 (689)
.+++++|.||+.||+ |..-.|.+.++.++++.. +.|..|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 468999999999999 999999999999999754 367677663
No 194
>PLN02412 probable glutathione peroxidase
Probab=97.14 E-value=0.0022 Score=62.53 Aligned_cols=43 Identities=9% Similarity=-0.072 Sum_probs=37.5
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhccc-ceeeeecc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG 194 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~ 194 (689)
.+++++|.||++||+.|..-.|...++.+++++.+ .|..|+|+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 35899999999999999999999999999998764 78888874
No 195
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.12 E-value=0.00033 Score=65.37 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=44.4
Q ss_pred CCcccc----CCCCCEEEEEEcCCCcCCcCchHH-H--HHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccc
Q 005592 145 DFPSIF----HDSKPWLIQVYSDGSYLCGQFSGA-W--KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (689)
Q Consensus 145 nF~~~I----~~~~~~LV~FYapwC~~Ck~l~p~-w--~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gy 217 (689)
+|++.+ .++++++|.||++||++|+.+... | .++++.++....+..++.+. ....+.. . ..++
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~--td~~~~~-~-------g~~v 80 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHET--TDKNLSP-D-------GQYV 80 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEecc--CCCCcCc-c-------Cccc
Confidence 555555 478999999999999999999875 3 23344443322233444331 1111111 1 3589
Q ss_pred cEEEEcCCCC
Q 005592 218 PSLVAFPPGC 227 (689)
Q Consensus 218 PTL~~f~~g~ 227 (689)
||++|+.+..
T Consensus 81 PtivFld~~g 90 (130)
T cd02960 81 PRIMFVDPSL 90 (130)
T ss_pred CeEEEECCCC
Confidence 9999996553
No 196
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.10 E-value=0.0021 Score=61.53 Aligned_cols=42 Identities=14% Similarity=-0.063 Sum_probs=36.8
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeec
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL 193 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc 193 (689)
.+++++|.|+++||+.|++-.|.+.++.++++.. +.|..|+|
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 4578999999999999999999999999999765 47888887
No 197
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.06 E-value=0.0022 Score=72.11 Aligned_cols=100 Identities=10% Similarity=0.131 Sum_probs=67.6
Q ss_pred cccchhhhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhcccC-ceEEEEEecccccHHHHhhcCCCCCCEEEE
Q 005592 262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (689)
Q Consensus 262 it~~~~~~~Fl~~~~~~k~~Vl~f-~~---~~~~~~~~~~~~A~~~~~~-~~f~~V~~~~~~s~~l~~~f~V~~~PtIvv 336 (689)
+++.+ ++..+.....+++.+|.| .+ .+....|.+..+|..|.+. +.|+.|..........+++|+|..+|||++
T Consensus 356 L~~~n-f~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 356 LSRPG-IENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred CCHHH-HHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 55554 566664222355555544 33 2333467777788887653 677777643321233457899999999999
Q ss_pred EeCCCCCceeec-CCCChHHHHHHHHh
Q 005592 337 LKDPGVKPVVYY-GSFNNSRLSEVMEQ 362 (689)
Q Consensus 337 fk~~~~~p~~y~-g~~~~~~L~~fI~~ 362 (689)
|+++...++.|. |..+.+.|..||+.
T Consensus 435 Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 435 FPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred EECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999877788897 57899999999975
No 198
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.06 E-value=0.0014 Score=57.28 Aligned_cols=87 Identities=13% Similarity=0.194 Sum_probs=66.8
Q ss_pred CccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCC
Q 005592 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (689)
Q Consensus 146 F~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~ 225 (689)
....+...++++|-|+.++|+ ....+|.++|+.+...+.+|.+.-. . ++++++ + .-|++++|++
T Consensus 10 l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~~---~---~~~~~~------~-~~~~i~l~~~ 73 (97)
T cd02981 10 LEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSDK---E---VAKKLK------V-KPGSVVLFKP 73 (97)
T ss_pred HHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEChH---H---HHHHcC------C-CCCceEEeCC
Confidence 444567889999999999887 5678999999999877788877733 2 555554 4 3489999987
Q ss_pred CCCCCCCccccccccCHHHHHHHHHH
Q 005592 226 GCKSSDCMTRFEGELSVDAVTDWFAT 251 (689)
Q Consensus 226 g~~~~~~~~~Y~G~rs~~~Iv~fv~k 251 (689)
... ....|.|..+.++|.+|+..
T Consensus 74 ~~~---~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 74 FEE---EPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred ccc---CCccCCCCCCHHHHHHHHHh
Confidence 533 35779999999999999863
No 199
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.02 E-value=0.0061 Score=57.03 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=68.4
Q ss_pred hhhhhhhcCCCcEEEEEEeCCCCC------CcHHHHHHHHhccc-CceEEEEEecccccHHHHhhcCCCCCCEEEEEeCC
Q 005592 268 GKNFLAKTGPHKVKVIFFSKTGER------ASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (689)
Q Consensus 268 ~~~Fl~~~~~~k~~Vl~f~~~~~~------~~~~~~~~A~~~~~-~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~ 340 (689)
++.|+...+ ..||||.++..+ ....+..++.+|.+ .+.|+.|.... ...+..+|+|.+.||+++|+++
T Consensus 27 ~~~~~~~~~---~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--~~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 27 LDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--SEAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred HHHHHhCCC---cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--CHHHHHHcCCccCCEEEEEECC
Confidence 788886543 677887543222 24566778888863 37788886433 5789999999999999999986
Q ss_pred CCCceeecCCCChHHHHHHHHhcCCCCCc
Q 005592 341 GVKPVVYYGSFNNSRLSEVMEQNKLQELP 369 (689)
Q Consensus 341 ~~~p~~y~g~~~~~~L~~fI~~~k~~~lp 369 (689)
.. .-...|..+.+.+.+||+...-...|
T Consensus 102 k~-v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 102 NY-RGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred EE-EEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 43 23467888999999999875433333
No 200
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.02 E-value=0.0015 Score=59.65 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=72.4
Q ss_pred eEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHH-HHHhcc--cceeeeecch--hhhhhHHHhhCCCCccc
Q 005592 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIA-ALLEGI--ANTGMVELGD--IRLATHLAERKPIGQIF 212 (689)
Q Consensus 138 V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A-~~L~~~--~~vg~Vdc~~--~~~~~~L~~k~~~~~~f 212 (689)
.+.|+.-+|+++|...+..||.|=.-. .--.-.-+|.++| +..+.. .-||.|...+ ++....|+++|++.
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~--- 80 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID--- 80 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S---
T ss_pred eeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC---
Confidence 378999999999998999999997543 1122345888999 444332 2455554431 22334599999955
Q ss_pred ccccccEEEEcCCCCCCCCCcccc--ccccCHHHHHHHHHHH
Q 005592 213 FRRGLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (689)
Q Consensus 213 ~V~gyPTL~~f~~g~~~~~~~~~Y--~G~rs~~~Iv~fv~k~ 252 (689)
-..||.+++|..+.. .+..| .|+.++++|..|+..+
T Consensus 81 -ke~fPv~~LF~~~~~---~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 81 -KEDFPVIYLFVGDKE---EPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp -CCC-SEEEEEESSTT---SEEEE-TCS-S-HHHHHHHHHHT
T ss_pred -cccCCEEEEecCCCC---CCccCCccCCccHHHHHHHHHhC
Confidence 467999999996544 58888 8999999999999876
No 201
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.01 E-value=0.0046 Score=54.02 Aligned_cols=83 Identities=18% Similarity=0.192 Sum_probs=57.7
Q ss_pred CcEEEEEE-eCCC---CCCcHHHHHHHHhccc--CceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCC
Q 005592 278 HKVKVIFF-SKTG---ERASPFVRQISRNYWA--YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF 351 (689)
Q Consensus 278 ~k~~Vl~f-~~~~---~~~~~~~~~~A~~~~~--~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~ 351 (689)
+++.+|.| .+.+ ....+.+..++..+.. .+.++.+... ....++++|+|...|++++|++++. +..|.|..
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~g~~ 89 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT--AEKDLASRFGVSGFPTIKFFPKGKK-PVDYEGGR 89 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc--chHHHHHhCCCCcCCEEEEecCCCc-ceeecCCC
Confidence 44555555 3322 2234556666776655 3555555422 2478999999999999999998765 67789999
Q ss_pred ChHHHHHHHHhc
Q 005592 352 NNSRLSEVMEQN 363 (689)
Q Consensus 352 ~~~~L~~fI~~~ 363 (689)
+.+.|..||.++
T Consensus 90 ~~~~l~~~i~~~ 101 (102)
T TIGR01126 90 DLEAIVEFVNEK 101 (102)
T ss_pred CHHHHHHHHHhc
Confidence 999999999764
No 202
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.97 E-value=0.015 Score=67.51 Aligned_cols=184 Identities=15% Similarity=0.112 Sum_probs=110.2
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcC-CCCCCC
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP-PGCKSS 230 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~-~g~~~~ 230 (689)
.+.+.|+.|+.+.|..|..+....++++ .|.+.+++-..|..++. .++++++ |...|++.++. +|..
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~~~---~~~~~~~------v~~~P~~~i~~~~~~~-- 432 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGEEP---ESETLPK------ITKLPTVALLDDDGNY-- 432 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccccch---hhHhhcC------CCcCCEEEEEeCCCcc--
Confidence 3455788999999999998888777777 45666677777776433 3778888 88999999995 4432
Q ss_pred CCccccccccCHHHHHHHHHHHhc-cCCcceecccchhhhhhhhhcCCCcEEEEE-EeCCC-CCCc--HHHHHHHHhccc
Q 005592 231 DCMTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVIF-FSKTG-ERAS--PFVRQISRNYWA 305 (689)
Q Consensus 231 ~~~~~Y~G~rs~~~Iv~fv~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~k~~Vl~-f~~~~-~~~~--~~~~~~A~~~~~ 305 (689)
....|.|-..=..+-.|+...+. +.+... ++ ++ ..+.+...+ ..+.+-+ .+..| .|+. ..+..+|... .
T Consensus 433 -~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~-l~-~~-~~~~i~~~~-~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~ 506 (555)
T TIGR03143 433 -TGLKFHGVPSGHELNSFILALYNAAGPGQP-LG-EE-LLEKIKKIT-KPVNIKIGVSLSCTLCPDVVLAAQRIASLN-P 506 (555)
T ss_pred -cceEEEecCccHhHHHHHHHHHHhcCCCCC-CC-HH-HHHHHHhcC-CCeEEEEEECCCCCCcHHHHHHHHHHHHhC-C
Confidence 34788886666666666655422 122222 22 22 222333321 2233333 34433 3433 2223344432 2
Q ss_pred CceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHH
Q 005592 306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (689)
Q Consensus 306 ~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI 360 (689)
.+..-.+.. .+-+++.++|+|.+.|++++ ++. ..+.|..+.+.|.+|+
T Consensus 507 ~i~~~~i~~--~~~~~~~~~~~v~~vP~~~i---~~~--~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 507 NVEAEMIDV--SHFPDLKDEYGIMSVPAIVV---DDQ--QVYFGKKTIEEMLELI 554 (555)
T ss_pred CceEEEEEC--cccHHHHHhCCceecCEEEE---CCE--EEEeeCCCHHHHHHhh
Confidence 344333332 22478999999999999887 222 3467887888887765
No 203
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.92 E-value=0.0013 Score=55.47 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=52.2
Q ss_pred EEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCccccc
Q 005592 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE 237 (689)
Q Consensus 158 V~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~Y~ 237 (689)
|++++++|++|..+...+++++..+. +.+-.++.. ....+ .++| |.+.|++++ +|. ..|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~---~~~~~-~~yg------v~~vPalvI--ng~------~~~~ 62 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIE---DFEEI-EKYG------VMSVPALVI--NGK------VVFV 62 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETT---THHHH-HHTT-------SSSSEEEE--TTE------EEEE
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEcc---CHHHH-HHcC------CCCCCEEEE--CCE------EEEE
Confidence 55689999999999999999998884 445445544 23334 7888 889999954 553 4678
Q ss_pred c-ccCHHHHHHHHH
Q 005592 238 G-ELSVDAVTDWFA 250 (689)
Q Consensus 238 G-~rs~~~Iv~fv~ 250 (689)
| ..+.+.|..|+.
T Consensus 63 G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 63 GRVPSKEELKELLE 76 (76)
T ss_dssp SS--HHHHHHHHHH
T ss_pred ecCCCHHHHHHHhC
Confidence 8 778888888863
No 204
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.88 E-value=0.00092 Score=55.59 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=37.7
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhh--CCCCcccccccccEEEEcCCCC
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAER--KPIGQIFFRRGLPSLVAFPPGC 227 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k--~~~~~~f~V~gyPTL~~f~~g~ 227 (689)
++.|+++||++|+++.+.+.+..- .+-.+|.+++........+ ++ +.++|+| ++.+|.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~------~~~~idi~~~~~~~~~~~~~~~~------~~~vP~i-~~~~g~ 61 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA------AYEWVDIEEDEGAADRVVSVNNG------NMTVPTV-KFADGS 61 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC------ceEEEeCcCCHhHHHHHHHHhCC------CceeCEE-EECCCe
Confidence 578999999999999988766432 3446777644332222122 24 7799998 466653
No 205
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.87 E-value=0.0089 Score=54.30 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=57.5
Q ss_pred hhhhhhhcCCCcEEEEEEeCC----CC--CCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCC
Q 005592 268 GKNFLAKTGPHKVKVIFFSKT----GE--RASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (689)
Q Consensus 268 ~~~Fl~~~~~~k~~Vl~f~~~----~~--~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~ 341 (689)
+++++. .+.+.|++|... .+ ...|.+..+|.+|.+.+.|+.|...+ ...++.+|+|.+.||+++|+++.
T Consensus 20 ~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 20 LDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--EQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred HHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--CHHHHHHcCCCcCCEEEEEECCE
Confidence 556663 334667777533 22 23577888999887777788886443 47899999999999999999753
Q ss_pred CCceeecCCCChHHH
Q 005592 342 VKPVVYYGSFNNSRL 356 (689)
Q Consensus 342 ~~p~~y~g~~~~~~L 356 (689)
......|..+.+.+
T Consensus 95 -~v~~~~G~~~~~e~ 108 (111)
T cd02965 95 -YVGVLAGIRDWDEY 108 (111)
T ss_pred -EEEEEeCccCHHHH
Confidence 22235677666554
No 206
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.82 E-value=0.0018 Score=61.13 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=53.6
Q ss_pred CCCCEEEEEEcC-CCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhCCC------------Ccccccc--
Q 005592 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPI------------GQIFFRR-- 215 (689)
Q Consensus 152 ~~~~~LV~FYap-wC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~~~------------~~~f~V~-- 215 (689)
.+++.+|.||+. ||+.|+.-.|...++++.+... +.+..|+.+.+......+++.+. .+.|.+.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 578899999999 9999999999999998887655 46666665544334444554432 1245566
Q ss_pred -------cccEEEEcCCCC
Q 005592 216 -------GLPSLVAFPPGC 227 (689)
Q Consensus 216 -------gyPTL~~f~~g~ 227 (689)
++|+++++-...
T Consensus 107 ~~~~~~~~~P~~~lId~~G 125 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDG 125 (146)
T ss_dssp CCTTTTSSSSEEEEEETTS
T ss_pred cccccCCeecEEEEEECCC
Confidence 899887775443
No 207
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.80 E-value=0.0032 Score=55.98 Aligned_cols=79 Identities=13% Similarity=0.171 Sum_probs=56.1
Q ss_pred CcEEEEEEe-C---CCCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCCh
Q 005592 278 HKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (689)
Q Consensus 278 ~k~~Vl~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~ 353 (689)
+++.+|.|. + .+....|.+..++..|.+ +.|+.|...+ ....++++|+|..+||+++|+++ ....|.|..+.
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~~ 93 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESS-IKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRTL 93 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCC-CCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCCH
Confidence 456566553 3 233456777778887754 5565553220 24789999999999999999876 55678999999
Q ss_pred HHHHHHH
Q 005592 354 SRLSEVM 360 (689)
Q Consensus 354 ~~L~~fI 360 (689)
+.|.+||
T Consensus 94 ~~l~~f~ 100 (100)
T cd02999 94 DSLAAFY 100 (100)
T ss_pred HHHHhhC
Confidence 9998885
No 208
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0035 Score=65.59 Aligned_cols=97 Identities=18% Similarity=0.288 Sum_probs=70.3
Q ss_pred cccchhhhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEE
Q 005592 262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (689)
Q Consensus 262 it~~~~~~~Fl~~~~~~k~~Vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvf 337 (689)
+|..++....+... ..+|++|.| .+ .|....|.+..++.+|+..+.++.|+.. ..+.+...|+|.+.|||++|
T Consensus 28 vT~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D--~~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 28 VTEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD--AEPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred chHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCC--cchhHHHHhCcCcCCeEEEe
Confidence 45555444444433 344555555 32 3334578888899999999999998632 24789999999999999999
Q ss_pred eCCCCCcee-ecCCCChHHHHHHHHhc
Q 005592 338 KDPGVKPVV-YYGSFNNSRLSEVMEQN 363 (689)
Q Consensus 338 k~~~~~p~~-y~g~~~~~~L~~fI~~~ 363 (689)
+++. |+. |.|....+.|..|+...
T Consensus 105 ~dGq--pVdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 105 KDGQ--PVDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred eCCc--CccccCCCCcHHHHHHHHHHh
Confidence 9863 554 78988899999999864
No 209
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.78 E-value=0.0069 Score=52.73 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=55.7
Q ss_pred CcEEEEEE-eCC---CCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCCh
Q 005592 278 HKVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (689)
Q Consensus 278 ~k~~Vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~ 353 (689)
+++.+|.| .+- +....+.+..++..|.+.+.|+.|.... ...++++|+|.+.|++++|+++ .....+.|..+.
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~~g~~~~ 88 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFAAG-QPVDGFQGAQPE 88 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEeCC-EEeeeecCCCCH
Confidence 34556655 332 2234566666777776666667775432 4789999999999999999854 333357888888
Q ss_pred HHHHHHHH
Q 005592 354 SRLSEVME 361 (689)
Q Consensus 354 ~~L~~fI~ 361 (689)
+.|.+|++
T Consensus 89 ~~l~~~l~ 96 (96)
T cd02956 89 EQLRQMLD 96 (96)
T ss_pred HHHHHHhC
Confidence 99988873
No 210
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=96.71 E-value=0.0064 Score=53.37 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=49.0
Q ss_pred CcHHHHHHHHhcccC--ceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCC-CCceeecCCCChHHHHHHH
Q 005592 292 ASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-VKPVVYYGSFNNSRLSEVM 360 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~--~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~-~~p~~y~g~~~~~~L~~fI 360 (689)
..+.+..++..+... +.|+.+. ++..+++..+++.+.|++++|+.+. ..+..|.|..+...|.+||
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~id---~~~~~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 36 LAPIYEELAEKLKGDDNVVIAKMD---ATANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred HhhHHHHHHHHhcCCCCEEEEEEe---CcchhhhhhccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 456667777777653 4555554 4445688899999999999998876 4556689999999888885
No 211
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.71 E-value=0.014 Score=53.08 Aligned_cols=91 Identities=16% Similarity=0.239 Sum_probs=57.7
Q ss_pred cEEEEEecC----CchhHHHHHHHHHHHHHhhccccccccccccccchHHHHHcCCCcEEEEEEeCcchHHHHHHh-ccc
Q 005592 396 WYCVILAGR----LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFY-LFS 470 (689)
Q Consensus 396 ~lCVIl~~~----~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~k~~~l~F~wvd~~~q~~f~~~f-~~~ 470 (689)
+++++++.. ...+.+.+++.++++|+ +||+.++.|+|+|.+.....++.| +..
T Consensus 16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk----------------------~fk~gki~Fv~~D~~~~~~~l~~fgl~~ 73 (111)
T cd03073 16 PLVVAYYNVDYSKNPKGTNYWRNRVLKVAK----------------------DFPDRKLNFAVADKEDFSHELEEFGLDF 73 (111)
T ss_pred CeEEEEEeccccCChhHHHHHHHHHHHHHH----------------------HCcCCeEEEEEEcHHHHHHHHHHcCCCc
Confidence 365655422 34556778888887776 888334999999998766677777 332
Q ss_pred CCcccccCCcCCCCCCCeEEEEEeecCCCcccceeecccCccccccccccCCccccchhccCCCCchHHHHHHHHHHh
Q 005592 471 ETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEII 548 (689)
Q Consensus 471 ~~~~~~c~~~~~~~~~P~lvI~~~rrn~~~~~~k~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 548 (689)
+. +..|.++|+ |... .||. + +++ ++ +.+.|.+|+++++
T Consensus 74 ~~-----------~~~P~~~i~----~~~~--~KY~------~---~~~-----------~~---t~e~i~~F~~~f~ 111 (111)
T cd03073 74 SG-----------GEKPVVAIR----TAKG--KKYV------M---EEE-----------FS---DVDALEEFLEDFF 111 (111)
T ss_pred cc-----------CCCCEEEEE----eCCC--CccC------C---Ccc-----------cC---CHHHHHHHHHHhC
Confidence 11 126999988 5433 3664 2 221 01 4488999998763
No 212
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=96.71 E-value=0.0067 Score=59.08 Aligned_cols=96 Identities=9% Similarity=0.084 Sum_probs=63.9
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecch--------hhhhhHHHhhCCC------------Cc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAERKPI------------GQ 210 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~--------~~~~~~L~~k~~~------------~~ 210 (689)
.++++||.||++||+.|....+...++.++++.. +.+..|.++. ........+++++ .+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 5678999999999999999999999999998743 5777777652 1111222233222 12
Q ss_pred ccccccccEEEEcCCCCCCCCCccccc-----------cccCHHHHHHHHHHH
Q 005592 211 IFFRRGLPSLVAFPPGCKSSDCMTRFE-----------GELSVDAVTDWFATA 252 (689)
Q Consensus 211 ~f~V~gyPTL~~f~~g~~~~~~~~~Y~-----------G~rs~~~Iv~fv~k~ 252 (689)
.|.|.+.|+++++-++.+ ..|. +..+.+.+.+-+...
T Consensus 104 ~~~v~~~P~~~lid~~G~-----v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 104 AYGAACTPDFFLFDPDGK-----LVYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HcCCCcCCcEEEECCCCe-----EEEeecccCCcccccccccHHHHHHHHHHH
Confidence 455889999999865433 2232 234567777777665
No 213
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=96.65 E-value=0.0074 Score=52.98 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=55.3
Q ss_pred CcEEEEEEe-CC---CCCCcHHHHHHHHhccc--CceEEEEEecccc-cHHHHhhcCCCCCCEEEEEeCCCCCceeecCC
Q 005592 278 HKVKVIFFS-KT---GERASPFVRQISRNYWA--YASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS 350 (689)
Q Consensus 278 ~k~~Vl~f~-~~---~~~~~~~~~~~A~~~~~--~~~f~~V~~~~~~-s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~ 350 (689)
+++.++.|. +. +....+.+..++..+.. .+.|+.+.. .. ...++++|+|.+.|++++|++++.....|.|.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~--~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~ 95 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA--DEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGG 95 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEEC--CCcchhhHHhCCCCCcCEEEEEeCCCCCccccCCc
Confidence 345555553 32 22235667777776652 344555542 23 46799999999999999999876666678899
Q ss_pred CChHHHHHHH
Q 005592 351 FNNSRLSEVM 360 (689)
Q Consensus 351 ~~~~~L~~fI 360 (689)
.+.+.|.+||
T Consensus 96 ~~~~~l~~~i 105 (105)
T cd02998 96 RDLEDLVKFV 105 (105)
T ss_pred cCHHHHHhhC
Confidence 9999898875
No 214
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.65 E-value=0.0015 Score=68.52 Aligned_cols=104 Identities=15% Similarity=0.255 Sum_probs=68.5
Q ss_pred eeEEecC-CCCccccC---CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCccc
Q 005592 137 AFNVVTS-EDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (689)
Q Consensus 137 ~V~~Lt~-~nF~~~I~---~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f 212 (689)
.|..|+. +.|-+.|. ....++|.||-|.+..|..+...+..+|..+ +.++|.+|... ... ++.+++
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-p~vKFvkI~a~---~~~-~~~~f~----- 195 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-PEVKFVKIRAS---KCP-ASENFP----- 195 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--TTSEEEEEEEC---GCC-TTTTS------
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEEehh---ccC-cccCCc-----
Confidence 5778865 67888883 3456788999999999999999999999986 45688888876 211 445666
Q ss_pred ccccccEEEEcCCCCCCCCCc---ccccc-ccCHHHHHHHHHHH
Q 005592 213 FRRGLPSLVAFPPGCKSSDCM---TRFEG-ELSVDAVTDWFATA 252 (689)
Q Consensus 213 ~V~gyPTL~~f~~g~~~~~~~---~~Y~G-~rs~~~Iv~fv~k~ 252 (689)
+...|||++|++|... ... .+.-| ..+..+|-.|+.+.
T Consensus 196 -~~~LPtllvYk~G~l~-~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 196 -DKNLPTLLVYKNGDLI-GNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp -TTC-SEEEEEETTEEE-EEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred -ccCCCEEEEEECCEEE-EeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 8899999999998531 011 11222 56777777777665
No 215
>PLN02309 5'-adenylylsulfate reductase
Probab=96.64 E-value=0.0069 Score=68.17 Aligned_cols=99 Identities=9% Similarity=0.138 Sum_probs=66.2
Q ss_pred cccchhhhhhhhhcCCCcEEEEEE-eC---CCCCCcHHHHHHHHhcccC-ceEEEEEecccccHHHHh-hcCCCCCCEEE
Q 005592 262 YTKESMGKNFLAKTGPHKVKVIFF-SK---TGERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIV 335 (689)
Q Consensus 262 it~~~~~~~Fl~~~~~~k~~Vl~f-~~---~~~~~~~~~~~~A~~~~~~-~~f~~V~~~~~~s~~l~~-~f~V~~~PtIv 335 (689)
++.++ +++.+.....+++.+|.| .+ .|....+.+..+|..|... +.|+.|.... ....+++ +|+|.++|||+
T Consensus 350 Lt~~n-fe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-~~~~la~~~~~I~~~PTil 427 (457)
T PLN02309 350 LSRAG-IENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-DQKEFAKQELQLGSFPTIL 427 (457)
T ss_pred CCHHH-HHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-cchHHHHhhCCCceeeEEE
Confidence 45444 455554223345555544 33 2333456677788877543 6677776431 2356775 69999999999
Q ss_pred EEeCCCCCceeecC-CCChHHHHHHHHh
Q 005592 336 FLKDPGVKPVVYYG-SFNNSRLSEVMEQ 362 (689)
Q Consensus 336 vfk~~~~~p~~y~g-~~~~~~L~~fI~~ 362 (689)
+|+++...++.|.| ..+.+.|..||+.
T Consensus 428 ~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 428 LFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred EEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 99998878888975 6899999999975
No 216
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=96.61 E-value=0.0075 Score=51.94 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=49.2
Q ss_pred CcHHHHHHHHhc--ccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHH
Q 005592 292 ASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (689)
Q Consensus 292 ~~~~~~~~A~~~--~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI 360 (689)
..+.+..++..+ ...+.|+.+.... ...++++|+|...|++++|++++.....|.|..+.+.|.+|+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 33 LAPEYEKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred hhHHHHHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 345566666666 4567777775322 478999999999999999988755556688888888887764
No 217
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.58 E-value=0.016 Score=60.27 Aligned_cols=107 Identities=13% Similarity=0.153 Sum_probs=79.2
Q ss_pred hhhhhhhcCCCcEEEEEEe---CCCCCCcHHHHHHHHhcccCceEEEEEeccccc-HHHHhhcCCCCCCEEEEEeCCCCC
Q 005592 268 GKNFLAKTGPHKVKVIFFS---KTGERASPFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVK 343 (689)
Q Consensus 268 ~~~Fl~~~~~~k~~Vl~f~---~~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s-~~l~~~f~V~~~PtIvvfk~~~~~ 343 (689)
.++|+....+..|+|-|+. .++++..|.|......+++--.-..|..-+|+. +.++.+|+|.++|||.+||.+ .
T Consensus 34 ddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd--~ 111 (468)
T KOG4277|consen 34 DDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD--H 111 (468)
T ss_pred hHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC--e
Confidence 4678777777889888874 467788899877555544433334444445555 789999999999999999863 3
Q ss_pred ceeecCCCChHHHHHHHHhcCCCCCccccccch
Q 005592 344 PVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTS 376 (689)
Q Consensus 344 p~~y~g~~~~~~L~~fI~~~k~~~lp~lts~~~ 376 (689)
.+.|-|..+.++|.+|...-.-+.+-.+.....
T Consensus 112 a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~ 144 (468)
T KOG4277|consen 112 AIDYRGGREKDAIIEFAHRCAAAIIEPINENQI 144 (468)
T ss_pred eeecCCCccHHHHHHHHHhcccceeeecChhHH
Confidence 456899999999999988877777777766443
No 218
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0072 Score=57.31 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=60.6
Q ss_pred EEEEEEeC---CCCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHH
Q 005592 280 VKVIFFSK---TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (689)
Q Consensus 280 ~~Vl~f~~---~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L 356 (689)
|.|-|+.. .++...|.+..++..|.+.+.|+.|++.+ ..+++.+|+|...||+++|+++... ..+.|-.+.+.|
T Consensus 64 VlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~ela~~Y~I~avPtvlvfknGe~~-d~~vG~~~~~~l 140 (150)
T KOG0910|consen 64 VLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPELAEDYEISAVPTVLVFKNGEKV-DRFVGAVPKEQL 140 (150)
T ss_pred EEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccchHhhcceeeeeEEEEEECCEEe-eeecccCCHHHH
Confidence 44445533 23346788888999998899999887533 5789999999999999999986543 346777888888
Q ss_pred HHHHHh
Q 005592 357 SEVMEQ 362 (689)
Q Consensus 357 ~~fI~~ 362 (689)
.+||+.
T Consensus 141 ~~~i~k 146 (150)
T KOG0910|consen 141 RSLIKK 146 (150)
T ss_pred HHHHHH
Confidence 888875
No 219
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=96.46 E-value=0.014 Score=52.82 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=56.3
Q ss_pred CcEEEEEE-eC---CCCCCcHHHHHHHHhccc-CceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCC
Q 005592 278 HKVKVIFF-SK---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (689)
Q Consensus 278 ~k~~Vl~f-~~---~~~~~~~~~~~~A~~~~~-~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~ 352 (689)
+++.+|.| .+ .+....+.+..++..+.+ .+.|+.|.... ...++++|+|.+.||+++|+++ .....+.|..+
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--~~~l~~~~~V~~~Pt~~i~~~g-~~~~~~~G~~~ 100 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--ERRLARKLGAHSVPAIVGIING-QVTFYHDSSFT 100 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--cHHHHHHcCCccCCEEEEEECC-EEEEEecCCCC
Confidence 45666655 33 223345667777777764 36677765322 3679999999999999999865 33334578888
Q ss_pred hHHHHHHHHh
Q 005592 353 NSRLSEVMEQ 362 (689)
Q Consensus 353 ~~~L~~fI~~ 362 (689)
...|.+||.+
T Consensus 101 ~~~l~~~i~~ 110 (111)
T cd02963 101 KQHVVDFVRK 110 (111)
T ss_pred HHHHHHHHhc
Confidence 8999999864
No 220
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.45 E-value=0.01 Score=52.62 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=45.3
Q ss_pred HHHhcccCceEEEEEecccc--cHHHHhhcCCCCCCEEEEEeC-CCCCceeecCCCChHHHHHHH
Q 005592 299 ISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKD-PGVKPVVYYGSFNNSRLSEVM 360 (689)
Q Consensus 299 ~A~~~~~~~~f~~V~~~~~~--s~~l~~~f~V~~~PtIvvfk~-~~~~p~~y~g~~~~~~L~~fI 360 (689)
++..+.+.+.+..+.+.... ...++++|+|.+.|++++|+. ++..+..+.|..+.+.|.+++
T Consensus 39 ~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 39 VQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred HHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 44455545666777654321 357999999999999999986 555666678888988888876
No 221
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.45 E-value=0.002 Score=65.50 Aligned_cols=86 Identities=22% Similarity=0.192 Sum_probs=60.9
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchh--------hhhhHHHhhCCCCcccccccccEEEEc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF 223 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~--------~~~~~L~~k~~~~~~f~V~gyPTL~~f 223 (689)
.++.-||.||.+.|++|+.++|+...+++.+. +.|-.|+.+.. .....+++++| |..+|+++++
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~------v~~~Pal~Lv 190 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLG------VKVTPALFLV 190 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcC------CCcCCEEEEE
Confidence 46788999999999999999999999999873 23444444311 11123667776 8899999999
Q ss_pred CCCCCCCCCccccccccCHHHHHH
Q 005592 224 PPGCKSSDCMTRFEGELSVDAVTD 247 (689)
Q Consensus 224 ~~g~~~~~~~~~Y~G~rs~~~Iv~ 247 (689)
.++... ....-.|..+.++|.+
T Consensus 191 ~~~~~~--~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 191 NPNTKK--WYPVSQGFMSLDELED 212 (215)
T ss_pred ECCCCe--EEEEeeecCCHHHHHH
Confidence 776531 1222368888888875
No 222
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.44 E-value=0.011 Score=51.69 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=48.6
Q ss_pred CcHHHHHHHHhccc---CceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHH
Q 005592 292 ASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (689)
Q Consensus 292 ~~~~~~~~A~~~~~---~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI 360 (689)
..+.+..++..+.. .+.|+.+... ....++++|+|...|++++|+++. ....|.|..+.+.|.+||
T Consensus 34 ~~p~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 34 LAPTWEQLAKKFNNENPSVKIAKVDCT--QHRELCSEFQVRGYPTLLLFKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred hCHHHHHHHHHHhccCCcEEEEEEECC--CChhhHhhcCCCcCCEEEEEeCCC-eeeEeeCCCCHHHHHhhC
Confidence 45667777777765 4566666432 236799999999999999997654 445689999988888875
No 223
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=96.43 E-value=0.018 Score=49.99 Aligned_cols=68 Identities=15% Similarity=0.320 Sum_probs=50.1
Q ss_pred cHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHhc
Q 005592 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (689)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~~ 363 (689)
.+.+..++..+...+.|+.+.... ...++++|+|...|++++|+++. ....+.|..+.+.|.+|++++
T Consensus 33 ~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 33 APILEELAKEYEGKVKFVKLNVDE--NPDIAAKYGIRSIPTLLLFKNGK-EVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCcCCEEEEEeCCc-EeeeecCCCCHHHHHHHHHhh
Confidence 455666776776667788876432 46789999999999999997643 223457888888999998753
No 224
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.41 E-value=0.01 Score=52.20 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=57.3
Q ss_pred cEEEEEEeC-CC---CCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCC--CCCEEEEEeCCCCCceee-cCCC
Q 005592 279 KVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE--SAPAIVFLKDPGVKPVVY-YGSF 351 (689)
Q Consensus 279 k~~Vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~--~~PtIvvfk~~~~~p~~y-~g~~ 351 (689)
++.+++|.. .+ +...+.++.+|.+|++.+.|+.|.... ...+++.|+|. +.|++++++........+ .|.+
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 455666642 22 223566677999998888888886433 35799999999 899999999843222334 3445
Q ss_pred ChHHHHHHHHh
Q 005592 352 NNSRLSEVMEQ 362 (689)
Q Consensus 352 ~~~~L~~fI~~ 362 (689)
+.+.|.+|+..
T Consensus 91 ~~~~l~~fi~~ 101 (103)
T cd02982 91 TAESLEEFVED 101 (103)
T ss_pred CHHHHHHHHHh
Confidence 88999999875
No 225
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.40 E-value=0.0035 Score=55.09 Aligned_cols=98 Identities=13% Similarity=0.237 Sum_probs=73.7
Q ss_pred cCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccc----cc
Q 005592 142 TSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR----GL 217 (689)
Q Consensus 142 t~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~----gy 217 (689)
+..+|.+++....-+||.|...--..-..+ ..+.++|+.++|.+.++-|||.+. ....||+++. |. .-
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~-e~kKLCKKlK------v~~~~kp~ 79 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDS-ESRKLCKKLK------VDPSSKPK 79 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCCh-HHHHHHHHHc------cCCCCCCC
Confidence 346788888888889998887654444444 489999999999999999999942 2345999987 44 33
Q ss_pred c-EEEEcCCCCCCCCCccccccccCHHHHHHHHHH
Q 005592 218 P-SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (689)
Q Consensus 218 P-TL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k 251 (689)
| +|.=|.+|.- ..+|+-..+..+|++|++.
T Consensus 80 ~~~LkHYKdG~f----HkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 80 PVELKHYKDGDF----HTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cchhhcccCCCc----cccccchhhHHHHHHHhhC
Confidence 3 2566777753 4689999999999999863
No 226
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=96.39 E-value=0.015 Score=51.11 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=47.6
Q ss_pred cHHHHHHHHhcc--cCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHH
Q 005592 293 SPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (689)
Q Consensus 293 ~~~~~~~A~~~~--~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI 360 (689)
.+.+..++..+. ..+.|+.+.....+...++++|+|...|++++|+++. ....+.|..+.+.|.+||
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 36 KPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred CHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 455555666665 3455666654433357899999999999999998653 455688988888888774
No 227
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=96.39 E-value=0.023 Score=51.30 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=61.4
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEeCCCCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEE----
Q 005592 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL---- 337 (689)
Q Consensus 262 it~~~~~~~Fl~~~~~~k~~Vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvf---- 337 (689)
+++.+.++.|+... +..++|.+|.+........+..+|..+++.+.|+.+. ...+.+++++. .|.+++|
T Consensus 5 i~s~~ele~f~~~~-~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~-----~~~~~~~~~~~-~~~vvl~rp~~ 77 (107)
T cd03068 5 LQTLKQVQEFLRDG-DDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTF-----DSEIFKSLKVS-PGQLVVFQPEK 77 (107)
T ss_pred cCCHHHHHHHHhcC-CCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEC-----hHHHHHhcCCC-CCceEEECcHH
Confidence 34444467777532 1234444555433223344566888888888887764 34577888885 5778888
Q ss_pred --eCCCCCceeecCC-CChHH-HHHHHHhc
Q 005592 338 --KDPGVKPVVYYGS-FNNSR-LSEVMEQN 363 (689)
Q Consensus 338 --k~~~~~p~~y~g~-~~~~~-L~~fI~~~ 363 (689)
+..+.+.++|.|. .+.+. |.+||+.|
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 5566777789887 67766 99999865
No 228
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=96.29 E-value=0.018 Score=54.72 Aligned_cols=86 Identities=16% Similarity=0.204 Sum_probs=57.8
Q ss_pred CCcEEEEEEeC-C---CCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCC
Q 005592 277 PHKVKVIFFSK-T---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (689)
Q Consensus 277 ~~k~~Vl~f~~-~---~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~ 352 (689)
.+++.||.|.. - |....+.+..++..|...+.|..|.+.......++++|+|...|++++|..++.....+.|..+
T Consensus 19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~ 98 (142)
T cd02950 19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQP 98 (142)
T ss_pred CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCC
Confidence 34566766642 1 2224566666777776667788876543323578899999999999999655543334678888
Q ss_pred hHHHHHHHHh
Q 005592 353 NSRLSEVMEQ 362 (689)
Q Consensus 353 ~~~L~~fI~~ 362 (689)
.+.|.++|..
T Consensus 99 ~~~l~~~l~~ 108 (142)
T cd02950 99 KQVLAQNLDA 108 (142)
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 229
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=96.29 E-value=0.019 Score=50.45 Aligned_cols=78 Identities=18% Similarity=0.080 Sum_probs=54.8
Q ss_pred EEEEEEeCC---CCCCcHHHHHHHHhccc-CceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHH
Q 005592 280 VKVIFFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (689)
Q Consensus 280 ~~Vl~f~~~---~~~~~~~~~~~A~~~~~-~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~ 355 (689)
+.|.|+.+- +....|.+..++..+.. .+.|+.|...+ ...++++|+|.++||+++|+++. ...|.|..+.+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~--~~~~~G~~~~~~ 94 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ--EPGLSGRFFVTALPTIYHAKDGV--FRRYQGPRDKED 94 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC--CHhHHHHcCCcccCEEEEeCCCC--EEEecCCCCHHH
Confidence 555555442 23345666667766543 36667765432 46799999999999999998753 356899999999
Q ss_pred HHHHHH
Q 005592 356 LSEVME 361 (689)
Q Consensus 356 L~~fI~ 361 (689)
|.+||.
T Consensus 95 l~~~i~ 100 (101)
T cd02994 95 LISFIE 100 (101)
T ss_pred HHHHHh
Confidence 999985
No 230
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.28 E-value=0.0031 Score=53.36 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=36.1
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhh--hhHHHhhCCCCcccccccccEEE
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL--ATHLAERKPIGQIFFRRGLPSLV 221 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~--~~~L~~k~~~~~~f~V~gyPTL~ 221 (689)
++.|+++||++|+++.+.+.++. ..+...+..||-+++.. ...+.+..+ +.++|+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g------~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITG------QRTVPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhC------CCCCCeEE
Confidence 47899999999999999888765 22223344444332211 122445556 77999974
No 231
>PRK09381 trxA thioredoxin; Provisional
Probab=96.27 E-value=0.021 Score=50.97 Aligned_cols=83 Identities=13% Similarity=0.251 Sum_probs=58.1
Q ss_pred CcEEEEEE-eCC---CCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCCh
Q 005592 278 HKVKVIFF-SKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (689)
Q Consensus 278 ~k~~Vl~f-~~~---~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~ 353 (689)
+++.+|.| .+. +....+.+..++..|...+.|+.+.... ...+.++|+|...|++++|+++. ....+.|..+.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~ 97 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGE-VAATKVGALSK 97 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC--ChhHHHhCCCCcCCEEEEEeCCe-EEEEecCCCCH
Confidence 34555544 432 2224567777888887777778876433 46789999999999999997543 33346788888
Q ss_pred HHHHHHHHhc
Q 005592 354 SRLSEVMEQN 363 (689)
Q Consensus 354 ~~L~~fI~~~ 363 (689)
+.|..||..+
T Consensus 98 ~~l~~~i~~~ 107 (109)
T PRK09381 98 GQLKEFLDAN 107 (109)
T ss_pred HHHHHHHHHh
Confidence 8999998753
No 232
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.14 E-value=0.014 Score=53.09 Aligned_cols=102 Identities=13% Similarity=0.062 Sum_probs=76.5
Q ss_pred eEEecCCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHH---HhcccceeeeecchhhhhhHHHhhCCCCccccc
Q 005592 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL---LEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (689)
Q Consensus 138 V~~Lt~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~---L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V 214 (689)
|.++|.+|+........+..+.||.+ ..-..+.+.+.++|+. ++|.+.++.+|.++... ..+.+| +
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~---~~~~fg------l 69 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRH---PLLHLG------K 69 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh---HHHHcC------C
Confidence 45688888887778777888788833 2346788899999999 88889999999995433 667777 5
Q ss_pred cc--ccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 215 RG--LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 215 ~g--yPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
++ +|.+.+....... .+..+.+..+.++|.+|+.+.
T Consensus 70 ~~~~~P~i~i~~~~~~~--Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 70 TPADLPVIAIDSFRHMY--LFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred CHhHCCEEEEEcchhcC--cCCCCccccCHHHHHHHHHHH
Confidence 55 8999988754311 122256889999999999876
No 233
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.10 E-value=0.0061 Score=55.45 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=41.7
Q ss_pred CCCCEEEEEEcC-CCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhC
Q 005592 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK 206 (689)
Q Consensus 152 ~~~~~LV~FYap-wC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~ 206 (689)
.+++.+|.||+. ||++|+...+.+.++..+++.. +.+..|..+........+++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 80 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY 80 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh
Confidence 568999999999 9999999999999999998854 377777766443333344443
No 234
>PRK10996 thioredoxin 2; Provisional
Probab=96.07 E-value=0.024 Score=53.55 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=56.1
Q ss_pred CcEEEEEEeC-CC---CCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCCh
Q 005592 278 HKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (689)
Q Consensus 278 ~k~~Vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~ 353 (689)
+++.+|.|.. .+ ....+.+..++.++...+.|+.+... +...++++|+|.+.|++++|+++ .....+.|..+.
T Consensus 52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~~~~~V~~~Ptlii~~~G-~~v~~~~G~~~~ 128 (139)
T PRK10996 52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE--AERELSARFRIRSIPTIMIFKNG-QVVDMLNGAVPK 128 (139)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC--CCHHHHHhcCCCccCEEEEEECC-EEEEEEcCCCCH
Confidence 4565666543 22 11234556677666666667776543 24789999999999999999853 333346888899
Q ss_pred HHHHHHHHh
Q 005592 354 SRLSEVMEQ 362 (689)
Q Consensus 354 ~~L~~fI~~ 362 (689)
+.|.+|+++
T Consensus 129 e~l~~~l~~ 137 (139)
T PRK10996 129 APFDSWLNE 137 (139)
T ss_pred HHHHHHHHH
Confidence 999999875
No 235
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.00 E-value=0.056 Score=49.13 Aligned_cols=91 Identities=12% Similarity=0.191 Sum_probs=60.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHHHHhhccccccccccccccchHHHHHcCCCcEEEEEEeCcchHHHHHHhcccCCcccc
Q 005592 397 YCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFET 476 (689)
Q Consensus 397 lCVIl~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~k~~~l~F~wvd~~~q~~f~~~f~~~~~~~~~ 476 (689)
+.++++ +.++.+..++.++.+|+.+. .+|++ +.|+|+|++.....++.|-.++
T Consensus 19 ~~~l~f--~~~~~~~~~~~~~~vAk~~~-------------------~~kgk-i~Fv~~d~~~~~~~~~~fgl~~----- 71 (111)
T cd03072 19 FLILFH--DKDDLESLKEFKQAVARQLI-------------------SEKGA-INFLTADGDKFRHPLLHLGKTP----- 71 (111)
T ss_pred eEEEEe--cchHHHHHHHHHHHHHHHHH-------------------hcCce-EEEEEEechHhhhHHHHcCCCH-----
Confidence 334455 45567888899988887222 28776 9999999987777777773322
Q ss_pred cCCcCCCCCCCeEEEEEeecCCCcccceeecccCccccccccccCCccccchhccCCCCchHHHHHHHHHHhc
Q 005592 477 CGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQ 549 (689)
Q Consensus 477 c~~~~~~~~~P~lvI~~~rrn~~~~~~k~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 549 (689)
+++|.++|. +... -.||. + + ++ .-+.+.|..|+++++.
T Consensus 72 -------~~~P~i~i~----~~~~-~~Ky~---~--~---~~---------------~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 72 -------ADLPVIAID----SFRH-MYLFP---D--F---ED---------------VYVPGKLKQFVLDLHS 109 (111)
T ss_pred -------hHCCEEEEE----cchh-cCcCC---C--C---cc---------------ccCHHHHHHHHHHHhc
Confidence 246999988 5433 13554 1 1 21 1256899999999997
No 236
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.95 E-value=0.035 Score=51.96 Aligned_cols=84 Identities=12% Similarity=0.168 Sum_probs=60.3
Q ss_pred CcEEEEEEeCCC-C-------CCcHHHHHHHHhcccC-ceEEEEEecccccHHHHhhcCCCC--CCEEEEEeCCCCCcee
Q 005592 278 HKVKVIFFSKTG-E-------RASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVV 346 (689)
Q Consensus 278 ~k~~Vl~f~~~~-~-------~~~~~~~~~A~~~~~~-~~f~~V~~~~~~s~~l~~~f~V~~--~PtIvvfk~~~~~p~~ 346 (689)
+.++||.|-++. + .....++.+|.+|++. +.|+++.... ...+.+.|||.. +|+++++...+.+...
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~ 97 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--QLDLEEALNIGGFGYPAMVAINFRKMKFAT 97 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--cHHHHHHcCCCccCCCEEEEEecccCcccc
Confidence 568898885421 0 1123456689999988 7888887543 345999999964 8999999875433323
Q ss_pred ecCCCChHHHHHHHHhc
Q 005592 347 YYGSFNNSRLSEVMEQN 363 (689)
Q Consensus 347 y~g~~~~~~L~~fI~~~ 363 (689)
+.|+++.+.|.+|++..
T Consensus 98 ~~~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 98 LKGSFSEDGINEFLREL 114 (130)
T ss_pred ccCccCHHHHHHHHHHH
Confidence 67999999999998764
No 237
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=95.92 E-value=0.019 Score=53.53 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=40.1
Q ss_pred CCCEEEEEE-cCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhCC
Q 005592 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (689)
Q Consensus 153 ~~~~LV~FY-apwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~~ 207 (689)
+++++|.|| +.||+.|....|.+.++.+.+... +.+..|..+........+++++
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 678999999 589999999999999999888653 3666666554434444555544
No 238
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.035 Score=58.36 Aligned_cols=108 Identities=12% Similarity=0.177 Sum_probs=78.5
Q ss_pred ceeEEecCCCCccccC---CCCCEEEEEEcC----CCcCCcCchHHHHHHHHHHhcc--------cceeeeecchhhhhh
Q 005592 136 HAFNVVTSEDFPSIFH---DSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGI--------ANTGMVELGDIRLAT 200 (689)
Q Consensus 136 ~~V~~Lt~~nF~~~I~---~~~~~LV~FYap----wC~~Ck~l~p~w~~~A~~L~~~--------~~vg~Vdc~~~~~~~ 200 (689)
+.|..++.++|.+.+. .+-..+|+|.|- .|.-|++...+|.-+|...... +=++.||-++-+.
T Consensus 40 ~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~-- 117 (331)
T KOG2603|consen 40 SGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ-- 117 (331)
T ss_pred CCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH--
Confidence 3689999999999993 455678899875 6999999999999999876321 2478999985443
Q ss_pred HHHhhCCCCcccccccccEEEEcCCCCCCCCCcccc---ccccCHHHHHHHHHHH
Q 005592 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF---EGELSVDAVTDWFATA 252 (689)
Q Consensus 201 ~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~Y---~G~rs~~~Iv~fv~k~ 252 (689)
+-+.++ ++..|+|++|.+..........+ +-...++++.+|+.+.
T Consensus 118 -~Fq~l~------ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 118 -VFQQLN------LNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred -HHHHhc------ccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 667766 88999999996543211112222 2234599999999876
No 239
>PHA02278 thioredoxin-like protein
Probab=95.91 E-value=0.032 Score=50.01 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=52.9
Q ss_pred CcEEEEEEe-C---CCCCCcHHHHHHHHhcccCceEEEEEecccc--cHHHHhhcCCCCCCEEEEEeCCCCCceeecCCC
Q 005592 278 HKVKVIFFS-K---TGERASPFVRQISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF 351 (689)
Q Consensus 278 ~k~~Vl~f~-~---~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~--s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~ 351 (689)
+++.||.|. + .+....|.+..++..+.....|..+.+.... ...+.++|+|.+.||+++||++. ......|..
T Consensus 14 ~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~-~v~~~~G~~ 92 (103)
T PHA02278 14 KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ-LVKKYEDQV 92 (103)
T ss_pred CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE-EEEEEeCCC
Confidence 345566553 3 2233467777777664444567777654321 25799999999999999999853 323357877
Q ss_pred ChHHHHHH
Q 005592 352 NNSRLSEV 359 (689)
Q Consensus 352 ~~~~L~~f 359 (689)
+.+.|.++
T Consensus 93 ~~~~l~~~ 100 (103)
T PHA02278 93 TPMQLQEL 100 (103)
T ss_pred CHHHHHhh
Confidence 77777765
No 240
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=95.85 E-value=0.028 Score=57.58 Aligned_cols=68 Identities=10% Similarity=0.134 Sum_probs=51.6
Q ss_pred CcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceee-cCCCChHHHHHHHHhc
Q 005592 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY-YGSFNNSRLSEVMEQN 363 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y-~g~~~~~~L~~fI~~~ 363 (689)
..|.+..++..+.+.+.|+.+.... ...++++|+|.++||+++|+++. .+.| .|..+.+.|.+|+..+
T Consensus 70 ~~P~~e~la~~~~~~v~~~~VD~~~--~~~l~~~~~I~~~PTl~~f~~G~--~v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 70 MAPAWERLAKALKGQVNVADLDATR--ALNLAKRFAIKGYPTLLLFDKGK--MYQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred HHHHHHHHHHHcCCCeEEEEecCcc--cHHHHHHcCCCcCCEEEEEECCE--EEEeeCCCCCHHHHHHHHHHH
Confidence 4566777888887777777765332 46899999999999999999653 3334 6778999999998765
No 241
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=95.80 E-value=0.013 Score=53.82 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=63.1
Q ss_pred CCCCCEEEEEEcC----CCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCC
Q 005592 151 HDSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (689)
Q Consensus 151 ~~~~~~LV~FYap----wC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g 226 (689)
++.+..+|.||+| ||..|+..- .=+++.+-++....+-..|.+.... ..+|..++ +.+||++.++...
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~~fv~w~~dv~~~eg-~~la~~l~------~~~~P~~~~l~~~ 86 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINTRMLFWACSVAKPEG-YRVSQALR------ERTYPFLAMIMLK 86 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHcCEEEEEEecCChHH-HHHHHHhC------CCCCCEEEEEEec
Confidence 4688999999999 888885532 1123444555555666677664433 33788877 8899999988321
Q ss_pred CCCCCCccccccccCHHHHHHHHHHH
Q 005592 227 CKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 227 ~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
...........|..++++|+..+...
T Consensus 87 ~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 87 DNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred CCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 11111234568999999999998765
No 242
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=95.69 E-value=0.02 Score=59.67 Aligned_cols=91 Identities=13% Similarity=0.102 Sum_probs=63.8
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchh--------hhhhHHHhhCCCCcccccccccEEEEc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF 223 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~--------~~~~~L~~k~~~~~~f~V~gyPTL~~f 223 (689)
.++.-||.||..-|++|++++|+.+.+++.+. +.+-.|+.+.. .....+++++| |..+|++++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~Pal~Lv 220 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLG------VKYFPALYLV 220 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcC------CccCceEEEE
Confidence 45689999999999999999999999999874 23444444422 11123667777 8899999998
Q ss_pred CCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 224 PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 224 ~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
.++... ....=.|..+.++|.+=+...
T Consensus 221 ~~~t~~--~~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 221 NPKSQK--MSPLAYGFISQDELKERILNV 247 (256)
T ss_pred ECCCCc--EEEEeeccCCHHHHHHHHHHH
Confidence 776432 111125889999998766554
No 243
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=95.67 E-value=0.056 Score=47.98 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=48.0
Q ss_pred CcHHHHHHHHhcccC---ceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHh
Q 005592 292 ASPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~---~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~ 362 (689)
..+.+..++..|+.. +.++.+... ....++++|+|.+.|++++|+++ ....+.|..+.+.|.+|+++
T Consensus 33 ~~p~l~~l~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~I~~~Pt~~l~~~~--~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 33 LEPVWNEVGAELKSSGSPVRVGKLDAT--AYSSIASEFGVRGYPTIKLLKGD--LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred hChHHHHHHHHHHhcCCcEEEEEEECc--cCHhHHhhcCCccccEEEEEcCC--CceeecCCCCHHHHHHHHHh
Confidence 456676777776432 444444322 23679999999999999999753 34568898899999999865
No 244
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=95.58 E-value=0.071 Score=48.48 Aligned_cols=66 Identities=9% Similarity=0.201 Sum_probs=44.4
Q ss_pred CcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCcee-----e-c-CCCChHHHHHHH
Q 005592 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV-----Y-Y-GSFNNSRLSEVM 360 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~-----y-~-g~~~~~~L~~fI 360 (689)
..+.+..++.+|. .+.|..|.... ...+.++|+|...||+++|+++...-.. . . ++++.+++..|+
T Consensus 40 ~~p~l~~la~~~~-~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 40 MDKHLEILAKKHL-ETKFIKVNAEK--APFLVEKLNIKVLPTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred HHHHHHHHHHHcC-CCEEEEEEccc--CHHHHHHCCCccCCEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 3566777887775 46777776433 4679999999999999999986422111 1 1 345666666664
No 245
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.011 Score=55.78 Aligned_cols=65 Identities=25% Similarity=0.444 Sum_probs=51.7
Q ss_pred ccCcccccCcC--CCCCHHHHHHHHHHHHHhcCCCCCC--------CcHHHHHHHHHHHHHcCChhhhhhhh--ccC
Q 005592 36 PPSHYDALGIK--PYSSVEQVKEAYEKFSSKWNSGEEI--------PSTADFLKIQYAYELLTDPLWKRNYD--VYG 100 (689)
Q Consensus 36 ~~d~Y~vLgv~--~~as~~eIk~ayr~l~~~~HPDk~~--------~~~~~f~~i~~AyevL~d~~~R~~YD--~~g 100 (689)
+.+||.++|.. ...++.-++.-|.-..++.|||+.. .+.+.-.++++||.+|+||.+|+.|= ..|
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 56899999754 3455666777899999999999632 25677999999999999999999994 455
No 246
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.53 E-value=0.0078 Score=55.36 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=44.0
Q ss_pred CCCCCEEEEEEcC-------CCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEc
Q 005592 151 HDSKPWLIQVYSD-------GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (689)
Q Consensus 151 ~~~~~~LV~FYap-------wC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f 223 (689)
.++++.+|.|++. ||+.|....|..+++-........+..|..+....-.+-...+..+..+.++++|||+-+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~ 96 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW 96 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence 3568899999965 999999999999998777544456666666522111111111111113669999999988
Q ss_pred CCC
Q 005592 224 PPG 226 (689)
Q Consensus 224 ~~g 226 (689)
..+
T Consensus 97 ~~~ 99 (119)
T PF06110_consen 97 ETG 99 (119)
T ss_dssp TSS
T ss_pred CCC
Confidence 765
No 247
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.52 E-value=0.078 Score=52.45 Aligned_cols=42 Identities=5% Similarity=-0.116 Sum_probs=34.2
Q ss_pred CCC-EEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecc
Q 005592 153 SKP-WLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (689)
Q Consensus 153 ~~~-~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~ 194 (689)
+++ +++.|+|.||+.|.+-.|.+.++.+++++. +.|..|+|+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 454 456679999999999999999999999765 477888774
No 248
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=95.48 E-value=0.036 Score=55.00 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=57.2
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHH-Hhc--ccceeeeecchhh-hhhHH--------HhhCC-----------C
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-LEG--IANTGMVELGDIR-LATHL--------AERKP-----------I 208 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~-L~~--~~~vg~Vdc~~~~-~~~~L--------~~k~~-----------~ 208 (689)
.+++++|+|+|.||+.|..-.|...+++.. +.- .-....||.++.. ....+ ...++ +
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 489999999999999999999999998543 211 0123666655321 00111 11122 1
Q ss_pred CcccccccccEE-EEcCCCCCCCCCccccccccCHHHHHH
Q 005592 209 GQIFFRRGLPSL-VAFPPGCKSSDCMTRFEGELSVDAVTD 247 (689)
Q Consensus 209 ~~~f~V~gyPTL-~~f~~g~~~~~~~~~Y~G~rs~~~Iv~ 247 (689)
...|++.++|+- +++-...+ ....+.|..+.+++..
T Consensus 138 ~~~~gv~~~P~T~fVIDk~Gk---Vv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGK---VKFVKEGALSDSDIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCc---EEEEEeCCCCHHHHHH
Confidence 125668899776 55544333 2455689888877766
No 249
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=95.45 E-value=0.056 Score=47.37 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCcEEEEEEeC-CC---CCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCC
Q 005592 277 PHKVKVIFFSK-TG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (689)
Q Consensus 277 ~~k~~Vl~f~~-~~---~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~ 352 (689)
.+++.+++|.. .+ ....+.+..++..+.+.+.+..+... +..++.++++|.+.|++++|+++ .....+.|..+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~~l~~~~~v~~vPt~~i~~~g-~~v~~~~g~~~ 88 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID--EDQEIAEAAGIMGTPTVQFFKDK-ELVKEISGVKM 88 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHHHHCCCeeccEEEEEECC-eEEEEEeCCcc
Confidence 35566666642 22 11245555666666655666666542 24679999999999999999863 33334578778
Q ss_pred hHHHHHHHH
Q 005592 353 NSRLSEVME 361 (689)
Q Consensus 353 ~~~L~~fI~ 361 (689)
.+.|.+|++
T Consensus 89 ~~~~~~~l~ 97 (97)
T cd02949 89 KSEYREFIE 97 (97)
T ss_pred HHHHHHhhC
Confidence 888888763
No 250
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=95.43 E-value=0.038 Score=52.70 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=39.7
Q ss_pred CCCCEEEEEEcC-CCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhCC
Q 005592 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (689)
Q Consensus 152 ~~~~~LV~FYap-wC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~~ 207 (689)
.+++++|.||+. ||+.|....+.+.++.+.++.. +.+..|+.+........+++.+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~ 86 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKEL 86 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 457899999976 6888999999999999988754 3666666654434334445443
No 251
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=95.39 E-value=0.029 Score=58.18 Aligned_cols=93 Identities=15% Similarity=0.055 Sum_probs=61.5
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhh------hhhHHHhhCCCCcccccccccEEEEcCC
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR------LATHLAERKPIGQIFFRRGLPSLVAFPP 225 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~------~~~~L~~k~~~~~~f~V~gyPTL~~f~~ 225 (689)
.++.-||.||...|++|++++|+.+.+++.+.=.+....+|....+ .....++++| |..+|++++..+
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~PAl~Lv~~ 215 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLG------VKYFPALMLVDP 215 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcC------CcccceEEEEEC
Confidence 4568899999999999999999999999987422222333322111 1112445555 889999999977
Q ss_pred CCCCCCCccccccccCHHHHHHHHHHH
Q 005592 226 GCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 226 g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
+... ....=.|..+.++|.+=+...
T Consensus 216 ~t~~--~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 216 KSGS--VRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred CCCc--EEEEeeccCCHHHHHHHHHHH
Confidence 6432 111125888888887765543
No 252
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=95.35 E-value=0.032 Score=53.48 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=49.3
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcc---cceeeeecch--hh--------------------hhhHHHhhC
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGD--IR--------------------LATHLAERK 206 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~---~~vg~Vdc~~--~~--------------------~~~~L~~k~ 206 (689)
.++++.+.|-|-||+.|+.|.|..+++-+.++.. .-|.=|.-+. .. ...+|++
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~-- 109 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE-- 109 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH--
Confidence 4588999999999999999999999998888765 3333333331 11 1122333
Q ss_pred CCCcccccccccEEEEcCCCC
Q 005592 207 PIGQIFFRRGLPSLVAFPPGC 227 (689)
Q Consensus 207 ~~~~~f~V~gyPTL~~f~~g~ 227 (689)
+|+|++.|++++..+..
T Consensus 110 ----ky~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 110 ----KYEVKGIPALVILKPDG 126 (157)
T ss_pred ----hcccCcCceeEEecCCC
Confidence 56699999999887654
No 253
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=95.31 E-value=0.071 Score=52.06 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=35.4
Q ss_pred CCCEEEEEE-cCCCcCCcCchHHHHHHHHHHhcc-cceeeeecch
Q 005592 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD 195 (689)
Q Consensus 153 ~~~~LV~FY-apwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~ 195 (689)
+++++|.|| +.||+.|..-.|.+.++++++... +.+..|.++.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 578999999 899999999999999999999654 3666676653
No 254
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=95.25 E-value=0.14 Score=46.56 Aligned_cols=67 Identities=19% Similarity=0.336 Sum_probs=48.4
Q ss_pred cHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCC-CceeecCCCChHHHHHHHHh
Q 005592 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV-KPVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~-~p~~y~g~~~~~~L~~fI~~ 362 (689)
.+.+..++..+ +.+.|..+... +.+++.++|+|...||+++|++++. ..+.+.|..+...+.+||..
T Consensus 41 ~~~l~~la~~~-~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~ 108 (113)
T cd02975 41 KQLLEELSELS-DKLKLEIYDFD--EDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIED 108 (113)
T ss_pred HHHHHHHHHhc-CceEEEEEeCC--cCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHH
Confidence 46666666655 45667777643 2478999999999999999997543 23357787777888888754
No 255
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.22 E-value=0.096 Score=46.45 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=54.9
Q ss_pred hhhhhhhhhcCCCcEEEEEEe-C---CCCCCcHHHHHHHHhccc-CceEEEEEecccccHHHHhhcCCCCCCEEEEEeCC
Q 005592 266 SMGKNFLAKTGPHKVKVIFFS-K---TGERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (689)
Q Consensus 266 ~~~~~Fl~~~~~~k~~Vl~f~-~---~~~~~~~~~~~~A~~~~~-~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~ 340 (689)
+.++++++ .+++.+|.|. + .+....+.+..++..|.+ .+.|+.+.. +...++++|+|...||+++|+++
T Consensus 8 ~~~~~~i~---~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~---d~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 8 EEWEELLS---NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEA---DTIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred HHHHHHHc---cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeC---CCHHHHHHcCCCcCcEEEEEECC
Confidence 33555554 2456666553 2 222234556666666653 245666643 25678999999999999999865
Q ss_pred CCCceeecCCCChHHHHHHHHh
Q 005592 341 GVKPVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 341 ~~~p~~y~g~~~~~~L~~fI~~ 362 (689)
... ....| .+...|.++|.+
T Consensus 82 ~~~-~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 82 ELV-AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEE-EEEec-CChHHHHHHHhh
Confidence 322 22345 477888888753
No 256
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=95.20 E-value=0.05 Score=49.71 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=46.3
Q ss_pred CcEEEEEEeC----CCCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCC
Q 005592 278 HKVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (689)
Q Consensus 278 ~k~~Vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~ 341 (689)
+++.||.|.. .+....|.+..+|.+|.+.+.|..|.+.. .+++.++|+|.+.||+++||++.
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEECCE
Confidence 4566766642 22334677888898887777888887543 47899999999999999999754
No 257
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=95.16 E-value=0.041 Score=54.60 Aligned_cols=42 Identities=12% Similarity=-0.080 Sum_probs=35.7
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhccc-ceeeeecc
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG 194 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~ 194 (689)
.++++||.|+|.||+.|++ .|.++++.+++++.+ .|..|.|.
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 4689999999999999976 779999999987654 88888884
No 258
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.13 E-value=0.082 Score=55.42 Aligned_cols=116 Identities=13% Similarity=0.188 Sum_probs=77.0
Q ss_pred CcHHHHHHHHhcccC-----ceEEEEEeccccc-HHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHhcCC
Q 005592 292 ASPFVRQISRNYWAY-----ASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKL 365 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~-----~~f~~V~~~~~~s-~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~~k~ 365 (689)
..|++..+|..|+.. +.+|.| +|+. ..|+.+|.|+++||+-+|+.+..-.-.|-|..+.+.|.+||+...-
T Consensus 31 L~piF~EAa~~~~~e~P~~kvvwg~V---Dcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 31 LKPIFEEAAAKFKQEFPEGKVVWGKV---DCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred HhHHHHHHHHHHHHhCCCcceEEEEc---ccchhhHHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHHHHHhc
Confidence 456666666665543 334444 4554 6899999999999999999875443358899999999999998877
Q ss_pred CCCccccccchhhhccCccCccCCCCCCcccEEEEEec-CCchhHHHHHHHHHHHHHhhc
Q 005592 366 QELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMRETIRRVQETLL 424 (689)
Q Consensus 366 ~~lp~lts~~~~~~~c~~~~~~~~~k~~~~~lCVIl~~-~~~~~~~~~~~~lr~~a~~~~ 424 (689)
..+-++.+.+..+.... +.| +..+.++- .++++++ .++++|..+.
T Consensus 108 ~~i~Ef~sl~~l~n~~~------p~K----~~vIgyF~~kdspey~----~~~kva~~lr 153 (375)
T KOG0912|consen 108 DPINEFESLDQLQNLDI------PSK----RTVIGYFPSKDSPEYD----NLRKVASLLR 153 (375)
T ss_pred cHHHHHHhHHHHHhhhc------ccc----ceEEEEeccCCCchHH----HHHHHHHHHh
Confidence 77778877776553331 233 34455554 3455553 4555655433
No 259
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.08 E-value=0.038 Score=53.81 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=41.9
Q ss_pred CCCCEEEEEEcCC-CcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCC
Q 005592 152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (689)
Q Consensus 152 ~~~~~LV~FYapw-C~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~ 207 (689)
.+++++|.||+.| |+.|.+-.|.+.++++++. .+.|..|+++........+++++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~ 98 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEG 98 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCC
Confidence 3568999999999 9999999999999998884 35677777774433444556654
No 260
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=95.04 E-value=0.15 Score=45.39 Aligned_cols=90 Identities=20% Similarity=0.179 Sum_probs=55.8
Q ss_pred hhhhhhhcCCCcEEEEEEe-CC---CCCCcHHHHHHHHhcccCceEEEEEecccc-cHHHHhhcCCCCCCEEEEEeCCCC
Q 005592 268 GKNFLAKTGPHKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGV 342 (689)
Q Consensus 268 ~~~Fl~~~~~~k~~Vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~-s~~l~~~f~V~~~PtIvvfk~~~~ 342 (689)
+++.+... .+++.||.|. +- +....|.+..++..| ..+.|+.|...... ...++++|+|...||+++|+++.
T Consensus 6 ~~~~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~- 82 (103)
T cd02985 6 LDEALKKA-KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGE- 82 (103)
T ss_pred HHHHHHHc-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCe-
Confidence 34444432 2566666553 32 222356677778777 56778777643321 14799999999999999998653
Q ss_pred CceeecCCCChHHHHHHHH
Q 005592 343 KPVVYYGSFNNSRLSEVME 361 (689)
Q Consensus 343 ~p~~y~g~~~~~~L~~fI~ 361 (689)
....+.|. ....|.+-+.
T Consensus 83 ~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 83 KIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred EEEEEeCC-CHHHHHHHHH
Confidence 33446675 5556665553
No 261
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.03 E-value=0.1 Score=51.36 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=52.8
Q ss_pred cEEEEEEe-CCC-CC--CcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCcee--e----c
Q 005592 279 KVKVIFFS-KTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV--Y----Y 348 (689)
Q Consensus 279 k~~Vl~f~-~~~-~~--~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~--y----~ 348 (689)
.++||.|. +.+ .| ..+.+..+|..|. .+.|..|..... .+..+|+|...||+++|+++...-.. + .
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~---~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g 159 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT---GASDEFDTDALPALLVYKGGELIGNFVRVTEDLG 159 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch---hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcC
Confidence 46666553 322 22 3566777888874 578888875432 68999999999999999986422111 1 2
Q ss_pred CCCChHHHHHHHHh
Q 005592 349 GSFNNSRLSEVMEQ 362 (689)
Q Consensus 349 g~~~~~~L~~fI~~ 362 (689)
.+++.+.|..|+..
T Consensus 160 ~~f~~~~le~~L~~ 173 (175)
T cd02987 160 EDFDAEDLESFLVE 173 (175)
T ss_pred CCCCHHHHHHHHHh
Confidence 25677888888765
No 262
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.96 E-value=0.044 Score=51.35 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=38.7
Q ss_pred CCCEEEEE-EcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhCC
Q 005592 153 SKPWLIQV-YSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (689)
Q Consensus 153 ~~~~LV~F-YapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~~ 207 (689)
+++++|.| .+.||+.|+.-.|.+.++.+++... +.+..|+.+........+++.+
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~ 79 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF 79 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC
Confidence 34555555 5999999999999999999998654 4777777774433333444443
No 263
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.88 E-value=0.053 Score=63.06 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=61.3
Q ss_pred CCCEEE-EEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCC
Q 005592 153 SKPWLI-QVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (689)
Q Consensus 153 ~~~~LV-~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~ 231 (689)
+++.-| .|++|+|++|.+..-.++++|.+.. .+..-.||.++. ..++++|+ |.++|++++ +|.
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~---~~~~~~~~------v~~vP~~~i--~~~---- 538 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHF---PDLKDEYG------IMSVPAIVV--DDQ---- 538 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECccc---HHHHHhCC------ceecCEEEE--CCE----
Confidence 455545 5689999999999999999988753 456777888854 45888988 889999876 442
Q ss_pred CccccccccCHHHHHHHH
Q 005592 232 CMTRFEGELSVDAVTDWF 249 (689)
Q Consensus 232 ~~~~Y~G~rs~~~Iv~fv 249 (689)
..|.|..+.++|++++
T Consensus 539 --~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 539 --QVYFGKKTIEEMLELI 554 (555)
T ss_pred --EEEeeCCCHHHHHHhh
Confidence 3568988999999885
No 264
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.15 Score=45.98 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=58.4
Q ss_pred CcEEEEEEeC----CCCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCCh
Q 005592 278 HKVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (689)
Q Consensus 278 ~k~~Vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~ 353 (689)
+++.|+.|.. .+....|.+..+|.+|.+ +.|..|.+.+ ..++++.++|...||+++||++... ..+-|. +.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~-~~~vGa-~~ 95 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEV-DEVVGA-NK 95 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEE-EEEecC-CH
Confidence 5777776642 234467889999999987 8899998655 6789999999999999999986543 223444 44
Q ss_pred HHHHHHHHh
Q 005592 354 SRLSEVMEQ 362 (689)
Q Consensus 354 ~~L~~fI~~ 362 (689)
..|.+.|..
T Consensus 96 ~~l~~~i~~ 104 (106)
T KOG0907|consen 96 AELEKKIAK 104 (106)
T ss_pred HHHHHHHHh
Confidence 467666654
No 265
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.018 Score=52.23 Aligned_cols=80 Identities=13% Similarity=0.068 Sum_probs=54.5
Q ss_pred CCCcccc---CCCCCEEEEEEcC--------CCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCccc
Q 005592 144 EDFPSIF---HDSKPWLIQVYSD--------GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (689)
Q Consensus 144 ~nF~~~I---~~~~~~LV~FYap--------wC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f 212 (689)
+.|++.+ .+++..+|.|++. ||+.|.+.+|...++-+.......|..|+..+.+.=...+. ++.+++
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n--~FR~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPAN--PFRKDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCC--ccccCC
Confidence 3455555 3555599999975 99999999999999877555556888888875433222222 223334
Q ss_pred cc-ccccEEEEcCC
Q 005592 213 FR-RGLPSLVAFPP 225 (689)
Q Consensus 213 ~V-~gyPTL~~f~~ 225 (689)
.+ .++|||+=+.+
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 45 89999987764
No 266
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=94.80 E-value=0.088 Score=47.62 Aligned_cols=59 Identities=12% Similarity=0.203 Sum_probs=41.3
Q ss_pred cEEEEEE-eCCC---CCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCC
Q 005592 279 KVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (689)
Q Consensus 279 k~~Vl~f-~~~~---~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~ 341 (689)
.+.+|.| .+.+ ....+.+..+|..|. .+.|+.|.... . .++++|+|...||+++|+++.
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~--~-~l~~~~~i~~~Pt~~~f~~G~ 87 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEK--A-FLVNYLDIKVLPTLLVYKNGE 87 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchh--h-HHHHhcCCCcCCEEEEEECCE
Confidence 5656555 3322 223566777888774 46788776543 2 799999999999999999864
No 267
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=94.74 E-value=0.084 Score=52.42 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=35.2
Q ss_pred CCCCEEEEEE-cCCCcCCcCchHHHHHHHHHHhccc-ceeeeecc
Q 005592 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELG 194 (689)
Q Consensus 152 ~~~~~LV~FY-apwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~ 194 (689)
.+++++|.|| +.||+.|..-.|.+.++.+++.... .|..|.++
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D 74 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD 74 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3568999999 9999999999999999999886543 66666665
No 268
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.70 E-value=0.039 Score=47.29 Aligned_cols=80 Identities=8% Similarity=0.083 Sum_probs=51.3
Q ss_pred EEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhh-hhHHHhhCCCCcccccccccEEEEcCCCCCCCCCcc
Q 005592 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMT 234 (689)
Q Consensus 156 ~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~-~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~ 234 (689)
-++.|+.|||++|++....+++++.++. .+.+..+|.+++.. ...+.+..+.+ +..+|+|+ .+|..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~----~~~vP~if--i~g~~------ 68 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKP----VETVPQIF--VDQKH------ 68 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCC----CCcCCEEE--ECCEE------
Confidence 4678999999999999999988876653 34666777764321 11243333311 56899975 35531
Q ss_pred ccccccCHHHHHHHHHHH
Q 005592 235 RFEGELSVDAVTDWFATA 252 (689)
Q Consensus 235 ~Y~G~rs~~~Iv~fv~k~ 252 (689)
-| ..++|.++++..
T Consensus 69 --ig--g~~~~~~~~~~~ 82 (85)
T PRK11200 69 --IG--GCTDFEAYVKEN 82 (85)
T ss_pred --Ec--CHHHHHHHHHHh
Confidence 22 347788877654
No 269
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=94.62 E-value=0.16 Score=46.67 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=47.6
Q ss_pred ccCceEEEEEeccc---ccHHHHhhcCCCC--CCEEEEEeCCCCCceee--cCCCChHHHHHHHHhcCC
Q 005592 304 WAYASFAFVLWREE---ESSIWWNTFEVES--APAIVFLKDPGVKPVVY--YGSFNNSRLSEVMEQNKL 365 (689)
Q Consensus 304 ~~~~~f~~V~~~~~---~s~~l~~~f~V~~--~PtIvvfk~~~~~p~~y--~g~~~~~~L~~fI~~~k~ 365 (689)
.+.+.++.|.+.+- +..+|.++|+|.. +|.+++|..+...|+.| +|+++.+.|..|++.|.-
T Consensus 52 ~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 52 SDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp -SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred CCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 35677888887664 3478999999964 89999999888889988 899999999999999843
No 270
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=94.62 E-value=0.063 Score=50.39 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=40.3
Q ss_pred CCCCEEEEEEcCC-CcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCC
Q 005592 152 DSKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (689)
Q Consensus 152 ~~~~~LV~FYapw-C~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~ 207 (689)
.+++.+|.||+.| |++|..-.|.+.++.+++.+ +.|..|+.+.........++++
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~ 80 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADLPFAQKRWCGAEG 80 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCCHHHHHHHHHhcC
Confidence 3578999999998 69999999999999998753 4677777764333233444444
No 271
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=94.55 E-value=0.16 Score=43.94 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=50.3
Q ss_pred hhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCC
Q 005592 268 GKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK 343 (689)
Q Consensus 268 ~~~Fl~~~~~~k~~Vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~ 343 (689)
+++.+.... +++.+|.|. +.+ ....+.+..++..+...+.|..+.. .+..+++++|+|...||+++|+++. .
T Consensus 5 ~~~~~~~~~-~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~--~~~~~~~~~~~i~~~Pt~~~~~~g~-~ 80 (97)
T cd02984 5 FEELLKSDA-SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEA--EELPEISEKFEITAVPTFVFFRNGT-I 80 (97)
T ss_pred HHHHHhhCC-CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcc--ccCHHHHHhcCCccccEEEEEECCE-E
Confidence 344444332 356555553 322 1224455556666544556666543 2346799999999999999998542 2
Q ss_pred ceeecCCCChHHHHHHH
Q 005592 344 PVVYYGSFNNSRLSEVM 360 (689)
Q Consensus 344 p~~y~g~~~~~~L~~fI 360 (689)
-..+.| .+...|.+.|
T Consensus 81 ~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 81 VDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEEeC-CCHHHHHHhh
Confidence 222345 3566666654
No 272
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.53 E-value=0.085 Score=60.78 Aligned_cols=83 Identities=14% Similarity=0.143 Sum_probs=65.9
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCC
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~ 231 (689)
++..-+-.|+++.|++|........++|.. .+.+..-.||+.+++ +++++++ |.++|++++ ++.
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~id~~~~~---~~~~~~~------v~~VP~~~i--~~~---- 178 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMIDGALFQ---DEVEARN------IMAVPTVFL--NGE---- 178 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEEEchhCH---hHHHhcC------CcccCEEEE--CCc----
Confidence 345568899999999999999888888874 556788888888554 4889988 889999965 442
Q ss_pred CccccccccCHHHHHHHHHHH
Q 005592 232 CMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 232 ~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
..|.|..+.++|++.+.+.
T Consensus 179 --~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 179 --EFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred --EEEecCCCHHHHHHHHhcc
Confidence 4578999999999988754
No 273
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=94.41 E-value=0.2 Score=45.71 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=49.9
Q ss_pred CCcEEEEEEeCC--C--CCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceee
Q 005592 277 PHKVKVIFFSKT--G--ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY 347 (689)
Q Consensus 277 ~~k~~Vl~f~~~--~--~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y 347 (689)
.+++.||-|+.. + ....|.+..+|..|.+.+.|..|.+.+ .+++.+.|+|...||.++|+++.+-.+.+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--v~dva~~y~I~amPtfvffkngkh~~~d~ 85 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--VPVYTQYFDISYIPSTIFFFNGQHMKVDY 85 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--cHHHHHhcCceeCcEEEEEECCcEEEEec
Confidence 467878877532 1 223577788998887667787776543 57899999999899999999876554444
No 274
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=94.32 E-value=0.21 Score=41.77 Aligned_cols=78 Identities=19% Similarity=0.263 Sum_probs=50.1
Q ss_pred cEEEEEEeCC-C---CCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChH
Q 005592 279 KVKVIFFSKT-G---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (689)
Q Consensus 279 k~~Vl~f~~~-~---~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~ 354 (689)
++.+|+|... + ....+.+..++.. ...+.|+.+.... ...+++.|++...|++++|+++. ....+.|..+.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~ 86 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGK-EVDRVVGADPKE 86 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCE-EEEEEecCCCHH
Confidence 4556655432 2 1223444445544 3456677765432 46799999999999999998754 333467777778
Q ss_pred HHHHHH
Q 005592 355 RLSEVM 360 (689)
Q Consensus 355 ~L~~fI 360 (689)
.|.+||
T Consensus 87 ~l~~~i 92 (93)
T cd02947 87 ELEEFL 92 (93)
T ss_pred HHHHHh
Confidence 888876
No 275
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=94.29 E-value=0.064 Score=50.00 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=36.3
Q ss_pred CCCCEEEEEEcCCCcC-CcCchHHHHHHHHHHhcc----cceeeeecc
Q 005592 152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEGI----ANTGMVELG 194 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~-Ck~l~p~w~~~A~~L~~~----~~vg~Vdc~ 194 (689)
.+++++|.||++||+. |.+..+.+.++.+.+... +.+..|.++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4678999999999997 999999999999998653 567777765
No 276
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=94.23 E-value=0.077 Score=49.97 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=39.1
Q ss_pred CCEEEEEE-cCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhCC
Q 005592 154 KPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (689)
Q Consensus 154 ~~~LV~FY-apwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~~ 207 (689)
++++|.|| +.||+.|..-.|.+.++.+++... +.+..|+.+........+++++
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 84 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG 84 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC
Confidence 67777777 999999999999999999998653 4677777664333333445543
No 277
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=93.96 E-value=0.082 Score=42.79 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=34.9
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhh-hhHHHhhCCCCcccccccccEEEE
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA 222 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~-~~~L~~k~~~~~~f~V~gyPTL~~ 222 (689)
++.|+++||++|.++...+.+. .+.+..+|.+.+.. ...+.+..+ +.++|+|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~------~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNG------YRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcC------CcccCEEEE
Confidence 5789999999999987766552 23566677664322 122333334 669999976
No 278
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=93.88 E-value=0.12 Score=47.87 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=40.3
Q ss_pred CCCCEEEEEE-cCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhHHHhhC
Q 005592 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK 206 (689)
Q Consensus 152 ~~~~~LV~FY-apwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~L~~k~ 206 (689)
.+++++|.|| +.||+.|....|.+.++.+.++.. +.+..|..+........+++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 5678999999 789999999999999999998543 477777766433333344443
No 279
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=93.73 E-value=0.32 Score=48.47 Aligned_cols=97 Identities=11% Similarity=0.006 Sum_probs=60.2
Q ss_pred CCCCEEEEEE-cCCCcCCcCchHHHHHHHHHHhccc-ceeeeecchhhhh----------------------hHHHhhCC
Q 005592 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLA----------------------THLAERKP 207 (689)
Q Consensus 152 ~~~~~LV~FY-apwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~~~~~~----------------------~~L~~k~~ 207 (689)
.++++++.|| +.||+.|..-.+.+.+..++++... .+..|.++..... ..+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 3457888999 9999999999999999999986543 5666665532111 12444444
Q ss_pred CCcccccccc--cEEEEcCCCCCCCCCcc-cc--ccccCHHHHHHHHHHH
Q 005592 208 IGQIFFRRGL--PSLVAFPPGCKSSDCMT-RF--EGELSVDAVTDWFATA 252 (689)
Q Consensus 208 ~~~~f~V~gy--PTL~~f~~g~~~~~~~~-~Y--~G~rs~~~Iv~fv~k~ 252 (689)
+-.. -.+. |+.+++-++.+. .+. .+ ...++.+++...+...
T Consensus 110 v~~~--~~g~~~r~tfIID~~G~I--~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMRE--DEGLADRATFVVDPQGII--QAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcc--cCCceeeEEEEECCCCEE--EEEEEeCCCCCCCHHHHHHHHHhh
Confidence 2100 0355 888888544331 111 12 2357899998887543
No 280
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=93.57 E-value=0.39 Score=45.63 Aligned_cols=91 Identities=11% Similarity=0.158 Sum_probs=55.5
Q ss_pred hhhhhhhcCCCcEEEEEEe-C-C--CCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEE-EEeCCCC
Q 005592 268 GKNFLAKTGPHKVKVIFFS-K-T--GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV-FLKDPGV 342 (689)
Q Consensus 268 ~~~Fl~~~~~~k~~Vl~f~-~-~--~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIv-vfk~~~~ 342 (689)
+++.+... .+++.||-|. + + +....|.+..+|.++.+...|..|.+.. .+++.+.|+|...|+++ +||++.
T Consensus 14 ~d~~I~~~-~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~~~t~~~ffk~g~- 89 (142)
T PLN00410 14 VDQAILAE-EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE--VPDFNTMYELYDPCTVMFFFRNKH- 89 (142)
T ss_pred HHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC--CHHHHHHcCccCCCcEEEEEECCe-
Confidence 45555432 3566666554 2 1 2234677888998887777777776432 47899999999665555 888653
Q ss_pred Ccee-ecC--------CCChHHHHHHHHh
Q 005592 343 KPVV-YYG--------SFNNSRLSEVMEQ 362 (689)
Q Consensus 343 ~p~~-y~g--------~~~~~~L~~fI~~ 362 (689)
..+. ..| ..+.++|.+.++.
T Consensus 90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 90 IMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred EEEEEecccccccccccCCHHHHHHHHHH
Confidence 2332 245 2355566665543
No 281
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=93.56 E-value=0.21 Score=45.73 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHHhhcCCCCCCEEEEEeCC-CCCceeecCCCChHHHHHHHHh
Q 005592 320 SIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~-~~~p~~y~g~~~~~~L~~fI~~ 362 (689)
..+..+|+|...|++++|.++ +.....+.|..+.+.+..+|+.
T Consensus 74 ~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 74 KELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred HHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 578999999999999999986 4444456788787778777654
No 282
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.36 E-value=0.12 Score=51.62 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=22.8
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHH
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKT 177 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~ 177 (689)
+.++.++.|+.|.|++|+++.+...+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 46789999999999999999888764
No 283
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.35 E-value=0.58 Score=47.33 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=57.5
Q ss_pred CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCC
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK 228 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~ 228 (689)
...+..++.||++||..|+++.-....+|+.. ....+.+++.++.. .+|..+. |...|..+++..|..
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~---eis~~~~------v~~vp~~~~~~~~~~ 82 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFP---EISNLIA------VEAVPYFVFFFLGEK 82 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhh---HHHHHHH------HhcCceeeeeecchh
Confidence 46778899999999999999999999999988 66689999998544 4777766 889999999987754
No 284
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.06 E-value=0.1 Score=41.93 Aligned_cols=53 Identities=8% Similarity=0.112 Sum_probs=35.3
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhh-hhHHHhhCCCCcccccccccEEE
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~-~~~L~~k~~~~~~f~V~gyPTL~ 221 (689)
++.|+++||++|+++...+++.. +.+-.+|...+.. ...+.+..+ ...+|++.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~------~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSG------WPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhC------CCCcCEEE
Confidence 56889999999999888777543 4566777764432 223444445 45788774
No 285
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=93.02 E-value=0.21 Score=45.39 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=66.9
Q ss_pred EecCCCCccccCCCCCEEEEEE----cCCCcCCcCchHHHHHHHHHHh-cccceeeeecchhhhhhHHHhhCCCCccccc
Q 005592 140 VVTSEDFPSIFHDSKPWLIQVY----SDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (689)
Q Consensus 140 ~Lt~~nF~~~I~~~~~~LV~FY----apwC~~Ck~l~p~w~~~A~~L~-~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V 214 (689)
.+|.+|..... ..+.++.|| ++.-..-..+...+.++|+.++ +.+.++.+|.++... ..+.+|+. -
T Consensus 3 ~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~---~l~~fgl~----~ 73 (111)
T cd03073 3 HRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH---ELEEFGLD----F 73 (111)
T ss_pred eeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH---HHHHcCCC----c
Confidence 45666665543 344555555 2222334568889999999999 689999999985443 55777733 2
Q ss_pred cc--ccEEEEcCCCCCCCCCcccccccc-CHHHHHHHHHHH
Q 005592 215 RG--LPSLVAFPPGCKSSDCMTRFEGEL-SVDAVTDWFATA 252 (689)
Q Consensus 215 ~g--yPTL~~f~~g~~~~~~~~~Y~G~r-s~~~Iv~fv~k~ 252 (689)
.+ +|++.++..... .+. ..+.. +.++|.+|+.+.
T Consensus 74 ~~~~~P~~~i~~~~~~---KY~-~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 74 SGGEKPVVAIRTAKGK---KYV-MEEEFSDVDALEEFLEDF 110 (111)
T ss_pred ccCCCCEEEEEeCCCC---ccC-CCcccCCHHHHHHHHHHh
Confidence 24 999999864322 122 46778 999999999764
No 286
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.01 E-value=0.06 Score=52.98 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=61.9
Q ss_pred CCCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEE
Q 005592 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (689)
Q Consensus 143 ~~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~ 222 (689)
..+|-..+....-+++.||-|.-..|+-+-...+.+|... -..+|.+||+. ...-|+.+++ |+-.|+|.+
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h-~eTrFikvnae---~~PFlv~kL~------IkVLP~v~l 143 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH-VETRFIKVNAE---KAPFLVTKLN------IKVLPTVAL 143 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhc-ccceEEEEecc---cCceeeeeee------eeEeeeEEE
Confidence 4566666666777999999999999999999999888753 22389999999 4444889988 889999999
Q ss_pred cCCCCC
Q 005592 223 FPPGCK 228 (689)
Q Consensus 223 f~~g~~ 228 (689)
|.+|..
T Consensus 144 ~k~g~~ 149 (211)
T KOG1672|consen 144 FKNGKT 149 (211)
T ss_pred EEcCEE
Confidence 999964
No 287
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=92.87 E-value=0.3 Score=50.33 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=57.0
Q ss_pred CCCCCEEEEEEcCCCcCCcCchHHHHHHHHH-H---------hcc----c-ceeee----------------------ec
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-L---------EGI----A-NTGMV----------------------EL 193 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~-L---------~~~----~-~vg~V----------------------dc 193 (689)
.+.+..++.|.-|.|++|+++.+++.++.+. + .+. . ....| .|
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c 184 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC 184 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence 3567889999999999999999888776431 0 000 0 00012 23
Q ss_pred ch-hhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHHH
Q 005592 194 GD-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 194 ~~-~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
.. -.....+|+++| |+|.|||+ |.+|. ...|..+.+.|.+++...
T Consensus 185 ~~~v~~~~~la~~lg------i~gTPtiv-~~~G~-------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 185 DVDIADHYALGVQFG------VQGTPAIV-LSNGT-------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cchHHHhHHHHHHcC------CccccEEE-EcCCe-------EeeCCCCHHHHHHHHHHc
Confidence 21 012223566666 89999998 66774 348889999999988653
No 288
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=92.83 E-value=0.088 Score=44.24 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=35.2
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhh-h-hhHHHhhCCCCcccccccccEEEEcCCC
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-L-ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~-~-~~~L~~k~~~~~~f~V~gyPTL~~f~~g 226 (689)
++.|+++||++|+.+...++++... ..+..|+...+. . ...+.+..| +.++|++ |.+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g------~~~~P~v--~~~g 61 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTG------QRTVPNV--FIGG 61 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhC------CCCCCeE--EECC
Confidence 5789999999999999888775431 233344433221 1 112334445 6788986 4444
No 289
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=0.058 Score=53.06 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=43.8
Q ss_pred cCcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC----------CcHHHHHHHHHHHHHc
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELL 87 (689)
Q Consensus 37 ~d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~----------~~~~~f~~i~~AyevL 87 (689)
.+.|.+||+...++..+|+++||++....|||+-. ...+++.+|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999521 2456788899998754
No 290
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=92.55 E-value=0.17 Score=43.12 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=24.4
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhccc
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIA 186 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~ 186 (689)
++.|+.+.|++|..+.+...++.....+.+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~ 30 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGV 30 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcE
Confidence 468999999999999999999875554443
No 291
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=92.17 E-value=0.16 Score=40.23 Aligned_cols=54 Identities=13% Similarity=0.115 Sum_probs=36.0
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhh-hhhHHHhhCCCCcccccccccEEEE
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVA 222 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~-~~~~L~~k~~~~~~f~V~gyPTL~~ 222 (689)
++.|..+||++|++....+++. .+.+-.+|.+++. ....+.+..| ..++|+|.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g------~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSG------VRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHS------SSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcC------CCccCEEEE
Confidence 4688999999999877655331 1467777777553 2233444445 779999875
No 292
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=92.06 E-value=1.4 Score=39.45 Aligned_cols=97 Identities=18% Similarity=0.348 Sum_probs=59.5
Q ss_pred EEEEEecC-CchhHHHHHHHHHHHHHhhccccccccccccccchHHHHHcC-CCcEEEEEEeCcchHHHHHHhcccCCcc
Q 005592 397 YCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFR-NKRLTFAWLDGEAQDRYCSFYLFSETSF 474 (689)
Q Consensus 397 lCVIl~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~k-~~~l~F~wvd~~~q~~f~~~f~~~~~~~ 474 (689)
+.+++|.. .+++--++.+.++++|+ .|+ ...++|+|||-+.-+-++.+.-+.=..
T Consensus 22 ~~IvAFaee~dpdG~eFl~ilk~vA~----------------------~nt~np~LsiIWIDPD~FPllv~yWektF~I- 78 (120)
T cd03074 22 IHIVAFAEEEDPDGYEFLEILKEVAR----------------------DNTDNPDLSIIWIDPDDFPLLVPYWEKTFGI- 78 (120)
T ss_pred ceEEEEeccCCccHHHHHHHHHHHHH----------------------hcCcCCCceEEEECCccCchhhHHHHhhcCc-
Confidence 44556654 45666677888888887 333 356999999998777666665221100
Q ss_pred cccCCcCCCCCCCeEEEEEeecCCCcccceeecccCccccccccccCCccccchhccCCCCchHHHHHHHHHHh
Q 005592 475 ETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEII 548 (689)
Q Consensus 475 ~~c~~~~~~~~~P~lvI~~~rrn~~~~~~k~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 548 (689)
+. ..|+|=|+ |.+. .... | + -|++++ | --+.++++.||+.+|
T Consensus 79 -------Dl-~~PqIGVV----~vtd--adSv---W--~-~m~~~~-d-----------~~t~~~Le~WiedVL 120 (120)
T cd03074 79 -------DL-FRPQIGVV----NVTD--ADSV---W--M-EMDDDE-D-----------LPTAEELEDWIEDVL 120 (120)
T ss_pred -------cc-CCCceeeE----eccc--ccce---e--E-eccccc-c-----------cCcHHHHHHHHHhhC
Confidence 11 23999999 7775 2333 6 4 112221 1 015689999999875
No 293
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=92.03 E-value=0.14 Score=46.24 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=52.8
Q ss_pred eEEecCCCCccccCCCCCEEEEEEcCC--CcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccc
Q 005592 138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (689)
Q Consensus 138 V~~Lt~~nF~~~I~~~~~~LV~FYapw--C~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~ 215 (689)
...++.++++..+......++.|..+. |..|...+=+.-|+.+.+.+....+.|.-. .+..|+.++| +.
T Consensus 11 ~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~---~e~~L~~r~g------v~ 81 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARA---AERALAARFG------VR 81 (107)
T ss_dssp EEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHH---HHHHHHHHHT-------T
T ss_pred CeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECch---hHHHHHHHhC------Cc
Confidence 466888889888866555555554432 233444444556666666666677777744 4455889888 88
Q ss_pred cccEEEEcCCCC
Q 005592 216 GLPSLVAFPPGC 227 (689)
Q Consensus 216 gyPTL~~f~~g~ 227 (689)
.+|++++|++|.
T Consensus 82 ~~PaLvf~R~g~ 93 (107)
T PF07449_consen 82 RWPALVFFRDGR 93 (107)
T ss_dssp SSSEEEEEETTE
T ss_pred cCCeEEEEECCE
Confidence 999999999984
No 294
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=91.95 E-value=0.88 Score=37.91 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=44.7
Q ss_pred cHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHh
Q 005592 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~ 362 (689)
.+.+..++..+...+.+..|... +..++.++|++...|++++ ++ . ..+.|..+.+.|.+++..
T Consensus 18 ~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~--~g-~--~~~~G~~~~~~l~~~l~~ 80 (82)
T TIGR00411 18 KRVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI--NG-D--VEFIGAPTKEELVEAIKK 80 (82)
T ss_pred HHHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE--CC-E--EEEecCCCHHHHHHHHHh
Confidence 45566667666655666777643 3467889999999999886 32 2 256788888888888764
No 295
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=91.81 E-value=0.8 Score=45.81 Aligned_cols=79 Identities=10% Similarity=0.181 Sum_probs=50.5
Q ss_pred CcEEEEEEe-CC---CCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCcee-----ec
Q 005592 278 HKVKVIFFS-KT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV-----YY 348 (689)
Q Consensus 278 ~k~~Vl~f~-~~---~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~-----y~ 348 (689)
+.++||.|. +. |....+.+..+|..|. .+.|..|.+.. ....|++...|||++|+++...-.. ..
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~-----~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~g 175 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ-----CIPNYPDKNLPTILVYRNGDIVKQFIGLLEFG 175 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH-----hHhhCCCCCCCEEEEEECCEEEEEEeCchhhC
Confidence 345566553 32 2223567778888874 57888886432 3689999999999999986532111 12
Q ss_pred C-CCChHHHHHHHHh
Q 005592 349 G-SFNNSRLSEVMEQ 362 (689)
Q Consensus 349 g-~~~~~~L~~fI~~ 362 (689)
| .++..+|..++..
T Consensus 176 g~~~~~~~lE~~L~~ 190 (192)
T cd02988 176 GMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCCHHHHHHHHHh
Confidence 2 4667777777654
No 296
>PRK15000 peroxidase; Provisional
Probab=91.81 E-value=0.76 Score=46.23 Aligned_cols=98 Identities=8% Similarity=0.030 Sum_probs=61.9
Q ss_pred CCCCEEEEEEc-CCCcCCcCchHHHHHHHHHHhccc-ceeeeecchhhhhhHHHh----hCCC---------------Cc
Q 005592 152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAE----RKPI---------------GQ 210 (689)
Q Consensus 152 ~~~~~LV~FYa-pwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~~~~~~~~L~~----k~~~---------------~~ 210 (689)
.++++++.||+ .||+.|..-.+.+.+.+++++... .|..|.++........++ +.++ .+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 35689999999 599999999999999999997653 677777763222111111 1111 11
Q ss_pred ccccc------cccEEEEcCCCCCCCCCcccc----ccccCHHHHHHHHHHH
Q 005592 211 IFFRR------GLPSLVAFPPGCKSSDCMTRF----EGELSVDAVTDWFATA 252 (689)
Q Consensus 211 ~f~V~------gyPTL~~f~~g~~~~~~~~~Y----~G~rs~~~Iv~fv~k~ 252 (689)
.|++. .+|+.+++-+..+. ...+ .-.|+.++++..+...
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I---~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIV---RHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEE---EEEEecCCCCCCCHHHHHHHHHHh
Confidence 34455 57888888644331 1112 2357888888887543
No 297
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=91.79 E-value=0.087 Score=49.24 Aligned_cols=67 Identities=9% Similarity=0.025 Sum_probs=38.1
Q ss_pred CCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCC
Q 005592 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (689)
Q Consensus 153 ~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g 226 (689)
...-++-|..+|||.|.+..|...++|+.. +.+.+--+--+++.. +-.++- ..+....||++++..+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-p~i~~~~i~rd~~~e---l~~~~l---t~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEAN-PNIEVRIILRDENKE---LMDQYL---TNGGRSIPTFIFLDKD 107 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH--TTEEEEEE-HHHHHH---HTTTTT---T-SS--SSEEEEE-TT
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhC-CCCeEEEEEecCChh---HHHHHH---hCCCeecCEEEEEcCC
Confidence 445666788899999999999999999875 344443343333322 333331 1227799999999654
No 298
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=91.62 E-value=0.15 Score=53.75 Aligned_cols=87 Identities=8% Similarity=0.146 Sum_probs=65.7
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCC
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~ 231 (689)
+..++-+.||+.||+..+...|++.-....+. .+.... .++........++++ +.+.|++.+...-
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~-~i~h~~--vee~~~lpsv~s~~~------~~~~ps~~~~n~t----- 140 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS-SIQHFA--VEESQALPSVFSSYG------IHSEPSNLMLNQT----- 140 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcc-cccccc--HHHHhhcccchhccc------cccCCcceeeccc-----
Confidence 46678889999999999999999987655554 222222 334444444667777 7799999887765
Q ss_pred CccccccccCHHHHHHHHHHH
Q 005592 232 CMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 232 ~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
++..|.|.++..+|++|-.+.
T Consensus 141 ~~~~~~~~r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 141 CPASYRGERDLASLVNFYTEI 161 (319)
T ss_pred cchhhcccccHHHHHHHHHhh
Confidence 467899999999999998877
No 299
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=91.46 E-value=0.45 Score=45.82 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=45.2
Q ss_pred hhhhhhhcCCCcEEEE-EEeCC---CCCCcHHHHHHHHhccc-CceEEEEEecccccHHHHhhcCCCC------CCEEEE
Q 005592 268 GKNFLAKTGPHKVKVI-FFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVES------APAIVF 336 (689)
Q Consensus 268 ~~~Fl~~~~~~k~~Vl-~f~~~---~~~~~~~~~~~A~~~~~-~~~f~~V~~~~~~s~~l~~~f~V~~------~PtIvv 336 (689)
+++.+... .+++.+| |+.+. +....+.+..++..|.+ .+.|+.|+... ..+++++|+|.. .||+++
T Consensus 38 f~~~l~~~-~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--~~~la~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 38 LEEELERD-KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--FPNVAEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred HHHHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--CHHHHHHcCceecCCcCCCCEEEE
Confidence 44444332 2344455 44432 22345667778877753 37788886433 478999999987 999999
Q ss_pred EeCCC
Q 005592 337 LKDPG 341 (689)
Q Consensus 337 fk~~~ 341 (689)
|+++.
T Consensus 115 f~~Gk 119 (152)
T cd02962 115 FQGGK 119 (152)
T ss_pred EECCE
Confidence 99653
No 300
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.43 E-value=0.52 Score=54.36 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=63.1
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCC
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~ 231 (689)
+...-+-.|+++.|++|....-.+.++|.. .+.+..-.||+.+++ +++++++ |.++|++++ ++.
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~-~p~i~~~~id~~~~~---~~~~~~~------v~~VP~~~i--~~~---- 179 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALL-NPNISHTMIDGALFQ---DEVEALG------IQGVPAVFL--NGE---- 179 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHh-CCCceEEEEEchhCH---HHHHhcC------CcccCEEEE--CCc----
Confidence 345568899999999999888777777665 345667778888544 4889988 889999876 442
Q ss_pred CccccccccCHHHHHHHHHHH
Q 005592 232 CMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 232 ~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
..|.|..+.+.+++.+.+.
T Consensus 180 --~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 180 --EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred --EEEecCCCHHHHHHHHhhc
Confidence 4578988888888877544
No 301
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=0.29 Score=46.69 Aligned_cols=88 Identities=19% Similarity=0.300 Sum_probs=54.9
Q ss_pred ccCCCCCEEEEEEcCCCcCCcCchHHHHHH---HHHHhcccceeeeecc-------------hhhhhhHHHhhCCCCccc
Q 005592 149 IFHDSKPWLIQVYSDGSYLCGQFSGAWKTI---AALLEGIANTGMVELG-------------DIRLATHLAERKPIGQIF 212 (689)
Q Consensus 149 ~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~---A~~L~~~~~vg~Vdc~-------------~~~~~~~L~~k~~~~~~f 212 (689)
....++..|++|-++.|..|.++...-... -+-+.+...+..+|.+ +.....+||++++
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~----- 112 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA----- 112 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc-----
Confidence 346788999999999999999987654432 2234443333333332 1112335888888
Q ss_pred ccccccEEEEcCCCCCCCCCccccccccCHHHH
Q 005592 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAV 245 (689)
Q Consensus 213 ~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~I 245 (689)
|++.||+++|...++. .-.-.|-...+.+
T Consensus 113 -vrstPtfvFfdk~Gk~---Il~lPGY~ppe~F 141 (182)
T COG2143 113 -VRSTPTFVFFDKTGKT---ILELPGYMPPEQF 141 (182)
T ss_pred -cccCceEEEEcCCCCE---EEecCCCCCHHHH
Confidence 9999999999765431 2222565555543
No 302
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=91.18 E-value=0.34 Score=47.04 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=42.7
Q ss_pred CCCCCEEEEEEcCCCcCCcCchH-HH--HHHHHHHhcccceeeeecchhhhhhHHHhhC-----CCCcccccccccEEEE
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERK-----PIGQIFFRRGLPSLVA 222 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p-~w--~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~-----~~~~~f~V~gyPTL~~ 222 (689)
..++++||.++.+||..|+.++- .| .++|+.|.....-.+||.++.+....+...+ | ..|+|+.++
T Consensus 35 ~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~------~gGwPl~vf 108 (163)
T PF03190_consen 35 KENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSG------SGGWPLTVF 108 (163)
T ss_dssp HHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---------SSEEEE
T ss_pred hcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcC------CCCCCceEE
Confidence 57899999999999999998875 34 3567777766666788888665533322211 3 459999888
Q ss_pred cCCCC
Q 005592 223 FPPGC 227 (689)
Q Consensus 223 f~~g~ 227 (689)
..+..
T Consensus 109 ltPdg 113 (163)
T PF03190_consen 109 LTPDG 113 (163)
T ss_dssp E-TTS
T ss_pred ECCCC
Confidence 86643
No 303
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=90.96 E-value=0.61 Score=42.32 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=40.1
Q ss_pred cEEEEEE-eCC---CCCCcHHHHHHHHhccc---CceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCC
Q 005592 279 KVKVIFF-SKT---GERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (689)
Q Consensus 279 k~~Vl~f-~~~---~~~~~~~~~~~A~~~~~---~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~ 341 (689)
++.+|.| .+- +....+.+..++..|++ .+.|+.+.........++++|+|..+|++++|+++.
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~ 89 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFS 89 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCC
Confidence 4556655 332 22235566667776653 355666543222235799999999999999998865
No 304
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=90.73 E-value=0.43 Score=53.94 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=27.2
Q ss_pred ccccCcCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 005592 40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI 71 (689)
Q Consensus 40 Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~ 71 (689)
++=+++..=.+.++|||+|||.++..||||-+
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlq 422 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQ 422 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCccccc
Confidence 34457777789999999999999999999865
No 305
>PRK13190 putative peroxiredoxin; Provisional
Probab=90.65 E-value=0.98 Score=45.44 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=57.3
Q ss_pred EEEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhhhhhH----HHhhCCC--------------Ccccccc-
Q 005592 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATH----LAERKPI--------------GQIFFRR- 215 (689)
Q Consensus 156 ~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~~~~~----L~~k~~~--------------~~~f~V~- 215 (689)
+|+.|++.||+.|..-.+.+.++.++++.. +.+..|.++....... +.++.++ .+.|++.
T Consensus 31 vL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~ 110 (202)
T PRK13190 31 LLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLID 110 (202)
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCcc
Confidence 344678999999999889999998888754 3666666663211100 1111110 1133352
Q ss_pred -----cccEEEEcCCCCCCCCCcc-cc--ccccCHHHHHHHHHHH
Q 005592 216 -----GLPSLVAFPPGCKSSDCMT-RF--EGELSVDAVTDWFATA 252 (689)
Q Consensus 216 -----gyPTL~~f~~g~~~~~~~~-~Y--~G~rs~~~Iv~fv~k~ 252 (689)
.+|+.+++-++.+. .+. .| .+.|+.++|+..+...
T Consensus 111 ~~~g~~~p~~fiId~~G~I--~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 111 ENSGATVRGVFIIDPNQIV--RWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred ccCCcEEeEEEEECCCCEE--EEEEEeCCCCCCCHHHHHHHHHHh
Confidence 47998888654432 111 12 4578999998887654
No 306
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=90.58 E-value=0.25 Score=46.28 Aligned_cols=31 Identities=3% Similarity=0.144 Sum_probs=26.3
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHH
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL 182 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L 182 (689)
+.++.++.|+.++|+||+++.|.+.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4567899999999999999999998876554
No 307
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=90.54 E-value=3.5 Score=37.03 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=55.7
Q ss_pred EEEEEecCCc-h-hHHHHHHHHHHHHHhhccccccccccccccchHHHHH-cCCCcEEEEEEeCc-chHHHHHHhcccCC
Q 005592 397 YCVILAGRLS-P-ELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVA-FRNKRLTFAWLDGE-AQDRYCSFYLFSET 472 (689)
Q Consensus 397 lCVIl~~~~~-~-~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~-~k~~~l~F~wvd~~-~q~~f~~~f~~~~~ 472 (689)
-|+|+++.+. + +++..++++..+|+.+- +.|++ ..+.++.| .++++ .-.+++.-|..
T Consensus 16 p~lvlf~D~Edeg~l~~A~~llQpiAd~~~---------------aka~~k~~dap~~f-~~a~ede~tdsLRDf~n--- 76 (116)
T cd03071 16 PCLVLFVDSEDEGESEAAKQLIQPIAEKII---------------AKYKAKEEEAPLLF-FVAGEDDMTDSLRDYTN--- 76 (116)
T ss_pred ceEEEEecccchhhHHHHHHHHHHHHHHHH---------------HHhhccCCCcceee-eeeccchHHHHHHHhcC---
Confidence 5788887643 3 47888899999888322 22222 32333333 33332 22555555522
Q ss_pred cccccCCcCCCCCCCeEEEEEeecCCCcccceeecccCccccccccccCCccccchhccCCCCchHHHHHHHHHHh
Q 005592 473 SFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEII 548 (689)
Q Consensus 473 ~~~~c~~~~~~~~~P~lvI~~~rrn~~~~~~k~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 548 (689)
.++..|.+||+ |-..+ .+|. . +.++. +.+.+..+|++++
T Consensus 77 ---------L~d~~P~LviL----Dip~r-~~~v------~---~~eeI--------------T~e~~~~fv~~yl 115 (116)
T cd03071 77 ---------LPEAAPLLTIL----DMSAR-AKYV------M---DVEEI--------------TPAIVEAFVSDFL 115 (116)
T ss_pred ---------CCccCceEEEE----ecccc-ceEe------C---chHhc--------------CHHHHHHHHHHhh
Confidence 23456999999 88773 4554 2 44433 5567777777764
No 308
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=90.23 E-value=1.1 Score=44.91 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=34.8
Q ss_pred CCCEEEEEEc-CCCcCCcCchHHHHHHHHHHhccc-ceeeeecch
Q 005592 153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (689)
Q Consensus 153 ~~~~LV~FYa-pwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~~ 195 (689)
+++.+|.||+ .||.+|..-.+.+.++++++.... .|..|+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 4678889995 889999988899999999997654 777777763
No 309
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=90.10 E-value=1.9 Score=46.36 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=43.4
Q ss_pred CceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHhcCCCCCccccccc
Q 005592 306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVT 375 (689)
Q Consensus 306 ~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~~k~~~lp~lts~~ 375 (689)
.+.||.|.. .....+++++|+...++|.+|+++. -+.|.|.++...|.+||-.---.++-.+++..
T Consensus 90 gigfg~VD~--~Kd~klAKKLgv~E~~SiyVfkd~~--~IEydG~~saDtLVeFl~dl~edPVeiIn~~~ 155 (383)
T PF01216_consen 90 GIGFGMVDS--KKDAKLAKKLGVEEEGSIYVFKDGE--VIEYDGERSADTLVEFLLDLLEDPVEIINNKH 155 (383)
T ss_dssp TEEEEEEET--TTTHHHHHHHT--STTEEEEEETTE--EEEE-S--SHHHHHHHHHHHHSSSEEEE-SHH
T ss_pred CcceEEecc--HHHHHHHHhcCccccCcEEEEECCc--EEEecCccCHHHHHHHHHHhcccchhhhcChh
Confidence 456666653 3347899999999999999999753 46799999999999998653334444455544
No 310
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=90.02 E-value=0.35 Score=41.62 Aligned_cols=79 Identities=8% Similarity=0.011 Sum_probs=45.5
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhh-hhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCccc
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~-~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~ 235 (689)
++.|..+||++|.+....++++..+.. .+.+-.+|...+. ....+.+..+.. +..+|+|+ .+|.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~----~~tVP~if--i~g~-------- 66 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKP----VETVPQIF--VDEK-------- 66 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCC----CCCcCeEE--ECCE--------
Confidence 678889999999998766665432221 1345566665321 112244444411 46889984 3442
Q ss_pred cccccCHHHHHHHHHHH
Q 005592 236 FEGELSVDAVTDWFATA 252 (689)
Q Consensus 236 Y~G~rs~~~Iv~fv~k~ 252 (689)
+-|. .++|++++.+.
T Consensus 67 ~igG--~~dl~~~~~~~ 81 (86)
T TIGR02183 67 HVGG--CTDFEQLVKEN 81 (86)
T ss_pred EecC--HHHHHHHHHhc
Confidence 1232 47888887665
No 311
>PTZ00051 thioredoxin; Provisional
Probab=89.97 E-value=0.97 Score=39.14 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=46.8
Q ss_pred hhhhhhhcCCCcEEEEEEe-CCC---CCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCC
Q 005592 268 GKNFLAKTGPHKVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVK 343 (689)
Q Consensus 268 ~~~Fl~~~~~~k~~Vl~f~-~~~---~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~ 343 (689)
+...++ .+++.+++|. +.+ ....+.+..++..+. .+.|+.+... +...++++|+|.+.|++++|+++. .
T Consensus 11 ~~~~~~---~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~ 83 (98)
T PTZ00051 11 FESTLS---QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVD--ELSEVAEKENITSMPTFKVFKNGS-V 83 (98)
T ss_pred HHHHHh---cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECc--chHHHHHHCCCceeeEEEEEeCCe-E
Confidence 444443 3456666554 322 122455555666543 3566666532 246799999999999999998653 2
Q ss_pred ceeecCCCChHHH
Q 005592 344 PVVYYGSFNNSRL 356 (689)
Q Consensus 344 p~~y~g~~~~~~L 356 (689)
...+.|. ..+.|
T Consensus 84 ~~~~~G~-~~~~~ 95 (98)
T PTZ00051 84 VDTLLGA-NDEAL 95 (98)
T ss_pred EEEEeCC-CHHHh
Confidence 2235554 44444
No 312
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=89.80 E-value=0.46 Score=40.08 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=36.9
Q ss_pred CCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEE
Q 005592 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (689)
Q Consensus 154 ~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~ 222 (689)
..-++.|..+||++|.+..-.+++. + +.+-.+|++++.....+.+..| ...+|+|.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~-----g-i~y~~idi~~~~~~~~~~~~~g------~~~vP~i~i 63 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK-----G-YDFEEIPLGNDARGRSLRAVTG------ATTVPQVFI 63 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc-----C-CCcEEEECCCChHHHHHHHHHC------CCCcCeEEE
Confidence 3457789999999999877666431 2 3555677765433333444445 679999853
No 313
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=89.71 E-value=1.7 Score=40.12 Aligned_cols=80 Identities=14% Similarity=0.241 Sum_probs=49.9
Q ss_pred CcEEEEEEeC----CCCCCcHHHHHHHHhcccCceEEEEEecccc---------cHHHHhhcCCC----CCCEEEEEeCC
Q 005592 278 HKVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVE----SAPAIVFLKDP 340 (689)
Q Consensus 278 ~k~~Vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~---------s~~l~~~f~V~----~~PtIvvfk~~ 340 (689)
++..+++|+. .|....|.+..++.. ....+.+|.+.... -.++.++|++. +.||+++|+++
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~G 100 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDG 100 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCC
Confidence 3455666643 223356777777765 34667888765211 12566777755 49999999986
Q ss_pred CCCceeecC-CCChHHHHHHH
Q 005592 341 GVKPVVYYG-SFNNSRLSEVM 360 (689)
Q Consensus 341 ~~~p~~y~g-~~~~~~L~~fI 360 (689)
.... ...| ..+.+.|.+|+
T Consensus 101 k~v~-~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 101 KQVS-VRCGSSTTAQELQDIA 120 (122)
T ss_pred eEEE-EEeCCCCCHHHHHHHh
Confidence 5332 2445 45688888886
No 314
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=89.04 E-value=8.2 Score=44.51 Aligned_cols=173 Identities=11% Similarity=0.039 Sum_probs=93.3
Q ss_pred CCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCc
Q 005592 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM 233 (689)
Q Consensus 154 ~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~ 233 (689)
+++-+.+|.+-|..|..+....+++++.- +.+ .+..... -...|++.+..+|.. ..
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i-----~~~~~~~---------------~~~~p~~~~~~~~~~---~~ 74 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLS-DKI-----TVEEDSL---------------DVRKPSFSITRPGED---TG 74 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhC-Cce-----EEEEccC---------------CCCCCEEEEEcCCcc---ce
Confidence 44545455557999988877777766543 322 2221100 014699999876644 35
Q ss_pred cccccccCHHHHHHHHHHHhc-cCCcceecccchhhhhhhhhcCCCcEEEE-EEeCCC-CCCcH--HHHHHHHhcccCce
Q 005592 234 TRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTG-ERASP--FVRQISRNYWAYAS 308 (689)
Q Consensus 234 ~~Y~G~rs~~~Iv~fv~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~k~~Vl-~f~~~~-~~~~~--~~~~~A~~~~~~~~ 308 (689)
..|.|-..=.++-.|+...+. +.+... ++. + ..+.+.... ..+.+. |.+..| .|+.. ....+|.. ...+.
T Consensus 75 i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~~-~-~~~~i~~~~-~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~ 149 (517)
T PRK15317 75 VRFAGIPMGHEFTSLVLALLQVGGHPPK-LDQ-E-VIEQIKALD-GDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNIT 149 (517)
T ss_pred EEEEecCccHHHHHHHHHHHHhcCCCCC-CCH-H-HHHHHHhcC-CCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCce
Confidence 788887766777777765422 223222 222 2 223333321 223333 334333 33321 22223332 33444
Q ss_pred EEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHh
Q 005592 309 FAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 309 f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~ 362 (689)
+-.+. ..+.+++.++|++.+.|++++ ++. ..+.|..+.+.|.+.+..
T Consensus 150 ~~~id--~~~~~~~~~~~~v~~VP~~~i---~~~--~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 150 HTMID--GALFQDEVEARNIMAVPTVFL---NGE--EFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEE--chhCHhHHHhcCCcccCEEEE---CCc--EEEecCCCHHHHHHHHhc
Confidence 44432 122488999999999999976 222 347788777777776654
No 315
>PTZ00062 glutaredoxin; Provisional
Probab=88.91 E-value=6.9 Score=39.56 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=47.5
Q ss_pred cEEEEEEeC----CCCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChH
Q 005592 279 KVKVIFFSK----TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (689)
Q Consensus 279 k~~Vl~f~~----~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~ 354 (689)
...|++|.. .+....+.+..++..| ..+.|..|. .+ |+|...|++++|+++... -.+.|- +..
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~---~d-------~~V~~vPtfv~~~~g~~i-~r~~G~-~~~ 84 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVN---LA-------DANNEYGVFEFYQNSQLI-NSLEGC-NTS 84 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEc---cc-------cCcccceEEEEEECCEEE-eeeeCC-CHH
Confidence 355777732 1222356667788877 457777774 11 999999999999975431 123443 677
Q ss_pred HHHHHHHhcCC
Q 005592 355 RLSEVMEQNKL 365 (689)
Q Consensus 355 ~L~~fI~~~k~ 365 (689)
.|..++..+.-
T Consensus 85 ~~~~~~~~~~~ 95 (204)
T PTZ00062 85 TLVSFIRGWAQ 95 (204)
T ss_pred HHHHHHHHHcC
Confidence 78888877543
No 316
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=88.78 E-value=0.45 Score=46.00 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=31.6
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhccccee
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTG 189 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg 189 (689)
+..+.++.|+.+.|+||+++.+....+.+++.+.+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence 67889999999999999999999998888775544443
No 317
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=88.32 E-value=1.3 Score=46.55 Aligned_cols=68 Identities=12% Similarity=0.154 Sum_probs=43.5
Q ss_pred HHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCcee-----e-cCCCChHHHHHHHHhcCC
Q 005592 294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV-----Y-YGSFNNSRLSEVMEQNKL 365 (689)
Q Consensus 294 ~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~-----y-~g~~~~~~L~~fI~~~k~ 365 (689)
..+..+|..| ..++|..+....+. +..+|.+...|||++|+++...... . ..+++..+|..|+..+..
T Consensus 166 ~~L~~LA~ky-p~vKFvkI~a~~~~---~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 166 SCLECLARKY-PEVKFVKIRASKCP---ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp HHHHHHHHH--TTSEEEEEEECGCC---TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred HHHHHHHHhC-CceEEEEEehhccC---cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 4456688887 46889888765442 6788999999999999976532211 1 234678889999987653
No 318
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=88.14 E-value=1.8 Score=38.44 Aligned_cols=92 Identities=9% Similarity=0.060 Sum_probs=63.5
Q ss_pred cCCCCccccC-CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEE
Q 005592 142 TSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (689)
Q Consensus 142 t~~nF~~~I~-~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL 220 (689)
+.++.+.++. ...+.+|=|+..--+ ....+|.++|..+.....++...-. . +...++ + ..|+|
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~-~~~~i 70 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFDS---K---VAKKLG------L-KMNEV 70 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECcH---H---HHHHcC------C-CCCcE
Confidence 3445777777 777888877765433 4566899999998766677665533 2 445554 4 47999
Q ss_pred EEcCCCCCCCCCcccc-ccccCHHHHHHHHHHH
Q 005592 221 VAFPPGCKSSDCMTRF-EGELSVDAVTDWFATA 252 (689)
Q Consensus 221 ~~f~~g~~~~~~~~~Y-~G~rs~~~Iv~fv~k~ 252 (689)
+++++... ....| .|..+.+.|.+|+...
T Consensus 71 ~l~~~~~e---~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 71 DFYEPFME---EPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred EEeCCCCC---CCcccCCCCCCHHHHHHHHHHh
Confidence 99987332 24569 8888999999998753
No 319
>PRK10329 glutaredoxin-like protein; Provisional
Probab=87.86 E-value=0.78 Score=39.13 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=45.9
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCcccc
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~Y 236 (689)
++.|..+||++|++..-.+++ .| +.+-.+|.++++......+..| ...+|++++ ++..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~g-I~~~~idi~~~~~~~~~~~~~g------~~~vPvv~i--~~~~-------- 60 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RG-FDFEMINVDRVPEAAETLRAQG------FRQLPVVIA--GDLS-------- 60 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CC-CceEEEECCCCHHHHHHHHHcC------CCCcCEEEE--CCEE--------
Confidence 567888999999987655533 12 3677788875544333334445 668999865 3211
Q ss_pred ccccCHHHHHHHHHHH
Q 005592 237 EGELSVDAVTDWFATA 252 (689)
Q Consensus 237 ~G~rs~~~Iv~fv~k~ 252 (689)
-+....+.|.+.+...
T Consensus 61 ~~Gf~~~~l~~~~~~~ 76 (81)
T PRK10329 61 WSGFRPDMINRLHPAP 76 (81)
T ss_pred EecCCHHHHHHHHHhh
Confidence 2345677777776543
No 320
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=87.60 E-value=0.3 Score=48.09 Aligned_cols=61 Identities=16% Similarity=0.310 Sum_probs=46.4
Q ss_pred CcccccCcCCCC--CHHHHHHHHHHHHHhcCCCCCCC--c------HHHHHHHHHHHHHcCChhhhhhhhc
Q 005592 38 SHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIP--S------TADFLKIQYAYELLTDPLWKRNYDV 98 (689)
Q Consensus 38 d~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~--~------~~~f~~i~~AyevL~d~~~R~~YD~ 98 (689)
|++...|..+.+ ..+.++..|+.+.+.+|||+... . -+.+..++.||.+|.+|..|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 344455555544 35678999999999999997542 1 2358899999999999999999853
No 321
>PRK13599 putative peroxiredoxin; Provisional
Probab=87.52 E-value=1.4 Score=44.80 Aligned_cols=96 Identities=7% Similarity=-0.045 Sum_probs=58.9
Q ss_pred CEEEEEEcCCCcCCcCchHHHHHHHHHHhccc-ceeeeecchhhhhh------------------------HHHhhCCCC
Q 005592 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLAT------------------------HLAERKPIG 209 (689)
Q Consensus 155 ~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~~~~~~~------------------------~L~~k~~~~ 209 (689)
.+|+.|.+.||+.|..-.+.+.++..+++... .+..|.++...... .+++.+|+.
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 34678889999999999999999999997553 67777777432111 123333311
Q ss_pred cc-cccccccEEEEcCCCCCCCCCcc-cc--ccccCHHHHHHHHHHH
Q 005592 210 QI-FFRRGLPSLVAFPPGCKSSDCMT-RF--EGELSVDAVTDWFATA 252 (689)
Q Consensus 210 ~~-f~V~gyPTL~~f~~g~~~~~~~~-~Y--~G~rs~~~Iv~fv~k~ 252 (689)
.. ......|+++++-+..+. ... .| ...|..+.|+..+...
T Consensus 111 ~~~~~~~~~R~tfIID~dG~I--r~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 111 HPGKGTNTVRAVFIVDDKGTI--RLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred ccCCCCceeeEEEEECCCCEE--EEEEEcCCCCCCCHHHHHHHHHHh
Confidence 00 001257888888654332 122 22 2357889998887643
No 322
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=87.46 E-value=0.87 Score=41.93 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=58.5
Q ss_pred cccc--CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcC
Q 005592 147 PSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (689)
Q Consensus 147 ~~~I--~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~ 224 (689)
+..| ...+.++|-|--.|.+.|.++-.....+|+.+...+.|.-||.++-+. +-+-++ +...||+++|-
T Consensus 15 dqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~---~~~~~~------l~~p~tvmfFf 85 (142)
T KOG3414|consen 15 DQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD---FVKMYE------LYDPPTVMFFF 85 (142)
T ss_pred HHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh---hhhhhc------ccCCceEEEEE
Confidence 3445 367788999999999999999999999999999988999999884433 444444 77999999988
Q ss_pred CCC
Q 005592 225 PGC 227 (689)
Q Consensus 225 ~g~ 227 (689)
+++
T Consensus 86 n~k 88 (142)
T KOG3414|consen 86 NNK 88 (142)
T ss_pred cCc
Confidence 764
No 323
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=87.41 E-value=1.5 Score=44.13 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=33.4
Q ss_pred CEEEEEEcCCCcCCcCchHHHHHHHHHHhccc-ceeeeecch
Q 005592 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (689)
Q Consensus 155 ~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~~ 195 (689)
.+|+.|+++||+.|..-.+.+.+++++++... .|..|+++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 45567889999999999999999999997653 677777663
No 324
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=87.35 E-value=16 Score=42.19 Aligned_cols=171 Identities=13% Similarity=0.056 Sum_probs=88.3
Q ss_pred CCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCc
Q 005592 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM 233 (689)
Q Consensus 154 ~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~ 233 (689)
.+.|+.|.. -|..|..+....+++++. .+.+.+-..+ .+ ....|++.++.+|.. ..
T Consensus 20 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~-s~ki~~~~~~-------------~~------~~~~p~~~~~~~~~~---~~ 75 (515)
T TIGR03140 20 PVTLVLSAG-SHEKSKELLELLDEIASL-SDKISLTQNT-------------AD------TLRKPSFTILRDGAD---TG 75 (515)
T ss_pred CEEEEEEeC-CCchhHHHHHHHHHHHHh-CCCeEEEEec-------------CC------cCCCCeEEEecCCcc---cc
Confidence 344555555 688887777666665543 2322221111 01 225699999876643 35
Q ss_pred cccccccCHHHHHHHHHHHhc-cCCcceecccchhhhhhhhhcCCCcEEEE-EEeCCC-CCCcHH--HHHHHHhcccCce
Q 005592 234 TRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKTG-ERASPF--VRQISRNYWAYAS 308 (689)
Q Consensus 234 ~~Y~G~rs~~~Iv~fv~k~v~-~lP~~~~it~~~~~~~Fl~~~~~~k~~Vl-~f~~~~-~~~~~~--~~~~A~~~~~~~~ 308 (689)
..|.|-..=.++-.|+...+. +.+... ++. + ..+.+...+ ..+.+. |.+..| .|+... ...++.. ...+.
T Consensus 76 i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~~-~-~~~~~~~~~-~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~-~p~i~ 150 (515)
T TIGR03140 76 IRFAGIPGGHEFTSLVLAILQVGGHGPK-LDE-G-IIDRIRRLN-GPLHFETYVSLTCQNCPDVVQALNQMALL-NPNIS 150 (515)
T ss_pred eEEEecCCcHHHHHHHHHHHHhcCCCCC-CCH-H-HHHHHHhcC-CCeEEEEEEeCCCCCCHHHHHHHHHHHHh-CCCce
Confidence 788887766677777765421 222221 222 2 122333321 223333 334333 333211 1223332 23333
Q ss_pred EEEEEeccc-ccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHH
Q 005592 309 FAFVLWREE-ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME 361 (689)
Q Consensus 309 f~~V~~~~~-~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~ 361 (689)
.-. .+. +.+++.++|++...|++++ ++. ..+.|..+...+.+.+.
T Consensus 151 ~~~---id~~~~~~~~~~~~v~~VP~~~i---~~~--~~~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 151 HTM---IDGALFQDEVEALGIQGVPAVFL---NGE--EFHNGRMDLAELLEKLE 196 (515)
T ss_pred EEE---EEchhCHHHHHhcCCcccCEEEE---CCc--EEEecCCCHHHHHHHHh
Confidence 322 233 2488999999999999886 222 34678777776655553
No 325
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=86.87 E-value=3.2 Score=38.28 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=37.7
Q ss_pred CcHHHHHHHHhcccCceEEEEEeccc-----ccHHHHhhcCCC-CCCEEEEEeCC
Q 005592 292 ASPFVRQISRNYWAYASFAFVLWREE-----ESSIWWNTFEVE-SAPAIVFLKDP 340 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~V~~~~~-----~s~~l~~~f~V~-~~PtIvvfk~~ 340 (689)
..|.+..++..+...+.|..|.+.+. ....+..+|+|. ..||+++|+.+
T Consensus 46 ~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 46 AEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred hchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC
Confidence 35777778888775688888886542 135799999998 99999999754
No 326
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=86.34 E-value=1.8 Score=38.57 Aligned_cols=92 Identities=16% Similarity=0.255 Sum_probs=61.4
Q ss_pred CCCccccCCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEc
Q 005592 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (689)
Q Consensus 144 ~nF~~~I~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f 223 (689)
++.+..+...++.+|=|+..--. .....|.++|..+.....++...-. . +..+++ + .|++++|
T Consensus 9 ~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~--~~~ivl~ 71 (104)
T cd03069 9 AEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK---Q---LLEKYG------Y--GEGVVLF 71 (104)
T ss_pred HHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH---H---HHHhcC------C--CCceEEE
Confidence 33455566677888877765433 4667899999999666677665543 2 456665 6 6889998
Q ss_pred CCCC---CCCCCccccccccCHHHHHHHHHHH
Q 005592 224 PPGC---KSSDCMTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 224 ~~g~---~~~~~~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
++.. +..+....|.|..+.+.|.+|+...
T Consensus 72 ~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 72 RPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred echhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 5421 0011235699999999999998753
No 327
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=86.25 E-value=1.2 Score=41.37 Aligned_cols=53 Identities=21% Similarity=0.137 Sum_probs=38.6
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCChh
Q 005592 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPL 91 (689)
Q Consensus 38 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~AyevL~d~~ 91 (689)
.-..||||++..+.++|.+.|.+|-...+|+++ +..-.=.+|..|.|.|..+.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG-GSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG-GSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC-CCHHHHHHHHHHHHHHHHHH
Confidence 345899999999999999999999999999986 55555667888888887544
No 328
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=85.40 E-value=3.5 Score=36.74 Aligned_cols=83 Identities=13% Similarity=0.223 Sum_probs=51.3
Q ss_pred CCcEEEEEEeCCCCCCcH---HHHHHHHhcccCceEEEEEecccccHHHHhhcCCC----CCCEE-EEEeCCCCCceeec
Q 005592 277 PHKVKVIFFSKTGERASP---FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE----SAPAI-VFLKDPGVKPVVYY 348 (689)
Q Consensus 277 ~~k~~Vl~f~~~~~~~~~---~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~----~~PtI-vvfk~~~~~p~~y~ 348 (689)
.+.+.|+|..+.. .... .++.+|.+.++.-..++|..++.+...||++++|. ..|.. .-|++++- .-.|+
T Consensus 19 r~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~f-HkdYd 96 (112)
T cd03067 19 RNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDF-HTEYN 96 (112)
T ss_pred cCcEEEEEecchh-hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCc-ccccc
Confidence 3456666665432 2223 33446666665555566655554567899999998 55544 45666542 23477
Q ss_pred CCCChHHHHHHHH
Q 005592 349 GSFNNSRLSEVME 361 (689)
Q Consensus 349 g~~~~~~L~~fI~ 361 (689)
..++...|..|++
T Consensus 97 R~~t~kSmv~Flr 109 (112)
T cd03067 97 RQLTFKSMVAFLR 109 (112)
T ss_pred chhhHHHHHHHhh
Confidence 7778888888885
No 329
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=84.79 E-value=8 Score=34.75 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=33.8
Q ss_pred ccHHHHhhcCCCCCCEEEEEeC-CCCCceeecCCCChHHHHHHHHh
Q 005592 318 ESSIWWNTFEVESAPAIVFLKD-PGVKPVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 318 ~s~~l~~~f~V~~~PtIvvfk~-~~~~p~~y~g~~~~~~L~~fI~~ 362 (689)
+...+...|++...|+++++.. .+.......|..+.+.+.+.++.
T Consensus 64 e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~ 109 (114)
T cd02958 64 EGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIE 109 (114)
T ss_pred cHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHH
Confidence 3467999999999999999987 45444446888888877666543
No 330
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=84.45 E-value=1.2 Score=36.70 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=33.7
Q ss_pred EEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEE
Q 005592 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (689)
Q Consensus 158 V~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~ 222 (689)
+.|..++|++|++....+++ .-+.+-.+|.+++........+.| ..++|+|++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g------~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQG------FRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcC------CcccCEEEE
Confidence 46778999999987755543 123666777775543332333345 668999755
No 331
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=83.86 E-value=3.4 Score=37.32 Aligned_cols=69 Identities=26% Similarity=0.348 Sum_probs=45.0
Q ss_pred hhhhhhhcCCCcEEEEEEeCCCCC----C--cHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCC
Q 005592 268 GKNFLAKTGPHKVKVIFFSKTGER----A--SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (689)
Q Consensus 268 ~~~Fl~~~~~~k~~Vl~f~~~~~~----~--~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~ 341 (689)
++.|+...+ ..|+||.++..+ . ...+=.+.++|......+.+. ......|..+|++...|++++|+++.
T Consensus 19 ld~~l~~~~---~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~g~ 93 (107)
T PF07449_consen 19 LDAFLAAPG---DAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRDGR 93 (107)
T ss_dssp HHHHHHCCS---CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEETTE
T ss_pred HHHHHhCCC---cEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEECCE
Confidence 788887543 678888653322 1 223344666776666555554 33357899999999999999999864
No 332
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=83.52 E-value=0.63 Score=41.87 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=54.8
Q ss_pred CCCCccccC--CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhH-HHhhCCCCcccccc-ccc
Q 005592 143 SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH-LAERKPIGQIFFRR-GLP 218 (689)
Q Consensus 143 ~~nF~~~I~--~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~-L~~k~~~~~~f~V~-gyP 218 (689)
.++|+.++. .+++++|+=.+..|+-+......|++........+.++-|+.-+++...+ +|+++| |+ .-|
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~------V~HeSP 80 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFG------VKHESP 80 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----------SS
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhC------CCcCCC
Confidence 355666773 47889999999999999988888888887766557888899887665554 678887 55 459
Q ss_pred EEEEcCCCCC
Q 005592 219 SLVAFPPGCK 228 (689)
Q Consensus 219 TL~~f~~g~~ 228 (689)
.++++.+|..
T Consensus 81 Q~ili~~g~~ 90 (105)
T PF11009_consen 81 QVILIKNGKV 90 (105)
T ss_dssp EEEEEETTEE
T ss_pred cEEEEECCEE
Confidence 9999999964
No 333
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=83.44 E-value=1 Score=37.69 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=32.6
Q ss_pred EEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhh-hhhHHHhhCCCCcccccccccEEE
Q 005592 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLV 221 (689)
Q Consensus 158 V~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~-~~~~L~~k~~~~~~f~V~gyPTL~ 221 (689)
+.|..+||++|.+....+++. + +.+-.+|.+.+. ....+.+..| ...+|+|+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-----~-i~~~~~di~~~~~~~~~~~~~~g------~~~vP~i~ 54 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-----G-VTFTEIRVDGDPALRDEMMQRSG------RRTVPQIF 54 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-----C-CCcEEEEecCCHHHHHHHHHHhC------CCCcCEEE
Confidence 567789999999988777652 2 345556665432 2222434344 66889973
No 334
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=83.24 E-value=1.7 Score=35.67 Aligned_cols=53 Identities=8% Similarity=0.075 Sum_probs=32.5
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhh-hhHHHhhCCCCcccccc-cccEEE
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRR-GLPSLV 221 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~-~~~L~~k~~~~~~f~V~-gyPTL~ 221 (689)
++.|..+||++|.+....+++. .+.+-.+|.+.+.. ...+-+..+ .. ++|+|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~------~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSG------GRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhC------CCCccCEEE
Confidence 4678889999999877666542 13566677764422 122333334 44 789874
No 335
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=83.17 E-value=1.9 Score=35.51 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=33.7
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhh-hhHHHhhCCCCcccccccccEEE
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~-~~~L~~k~~~~~~f~V~gyPTL~ 221 (689)
++.|+.|||++|++..-.+++. -+.+-.+|+.++.. ...+.+..+ ...+|+|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g------~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTG------SSVVPQIF 56 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhC------CCCcCEEE
Confidence 5688999999999877655541 13566777775432 223444444 45789874
No 336
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=83.05 E-value=1.7 Score=35.70 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=40.8
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCcccc
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~Y 236 (689)
++.|..+||+.|.+....+.+. .+.+-.+|.+++.....+-...| ...+|.| |.+|. +
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g------~~~vP~i--fi~g~--------~ 60 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTG------AMTVPQV--FIDGE--------L 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhC------CCCcCeE--EECCE--------E
Confidence 5788899999998876444421 23556667664433222333335 6689987 44442 1
Q ss_pred ccccCHHHHHHHH
Q 005592 237 EGELSVDAVTDWF 249 (689)
Q Consensus 237 ~G~rs~~~Iv~fv 249 (689)
-| ..++|.+|+
T Consensus 61 ig--g~~~l~~~l 71 (72)
T cd03029 61 IG--GSDDLEKYF 71 (72)
T ss_pred Ee--CHHHHHHHh
Confidence 23 256777765
No 337
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=82.90 E-value=1 Score=45.06 Aligned_cols=84 Identities=17% Similarity=0.229 Sum_probs=62.3
Q ss_pred CcceeEEec-CCCCccccC---CCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCC
Q 005592 134 SVHAFNVVT-SEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIG 209 (689)
Q Consensus 134 ~~~~V~~Lt-~~nF~~~I~---~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~ 209 (689)
.|..|.+|+ .+.|-..|+ +.....|..|-|.-..|-.+.....-+|.++ +.++|.+|-.. . .|.+
T Consensus 136 ~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss---~-------~gas 204 (273)
T KOG3171|consen 136 RYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSS---N-------TGAS 204 (273)
T ss_pred ccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeec---c-------ccch
Confidence 344578886 467988884 3456778999999999999988888888775 56688887766 2 1222
Q ss_pred cccccccccEEEEcCCCCC
Q 005592 210 QIFFRRGLPSLVAFPPGCK 228 (689)
Q Consensus 210 ~~f~V~gyPTL~~f~~g~~ 228 (689)
..|..+++|||.+|.+|.-
T Consensus 205 ~~F~~n~lP~LliYkgGeL 223 (273)
T KOG3171|consen 205 DRFSLNVLPTLLIYKGGEL 223 (273)
T ss_pred hhhcccCCceEEEeeCCch
Confidence 3455889999999999853
No 338
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=81.63 E-value=1.5 Score=43.57 Aligned_cols=103 Identities=17% Similarity=0.319 Sum_probs=67.9
Q ss_pred eeEEecCCCCcccc--CCCCCE-EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccc
Q 005592 137 AFNVVTSEDFPSIF--HDSKPW-LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I--~~~~~~-LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~ 213 (689)
.|..++..+|.+.| .+...| +|..|...-+.|.-+.-.+..+|..+ +.++|.++=.+ . +-..|+
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-p~iKFVki~at---~---cIpNYP------ 158 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-PQIKFVKIPAT---T---CIPNYP------ 158 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC-CcceEEecccc---c---ccCCCc------
Confidence 57889999998888 345555 45999999999999999999998876 33455555444 1 113455
Q ss_pred cccccEEEEcCCCCCC--CCCcccccccc-CHHHHHHHHHHH
Q 005592 214 RRGLPSLVAFPPGCKS--SDCMTRFEGEL-SVDAVTDWFATA 252 (689)
Q Consensus 214 V~gyPTL~~f~~g~~~--~~~~~~Y~G~r-s~~~Iv~fv~k~ 252 (689)
-...|||++|..|... .-.+-.+.|.+ +.+++-.++-+.
T Consensus 159 e~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 159 ESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred ccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 4588999999988532 00122345543 555555555443
No 339
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=81.57 E-value=3 Score=43.77 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=35.2
Q ss_pred CCCEEEEEE-cCCCcCCcCchHHHHHHHHHHhccc-ceeeeecch
Q 005592 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGD 195 (689)
Q Consensus 153 ~~~~LV~FY-apwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~~ 195 (689)
++++++.|| +.||+.|..-.|.+.+..++++... .|..|.++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 456777778 8999999999999999999997654 777778774
No 340
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=81.14 E-value=7.5 Score=41.03 Aligned_cols=69 Identities=10% Similarity=0.146 Sum_probs=45.9
Q ss_pred CcHHHHHHHHhcccCceEEEEEecccc---------cHHHHhhcCCCCCCEEEEEeCCCCCce-eecCCCChHHHHHHHH
Q 005592 292 ASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSFNNSRLSEVME 361 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~V~~~~~~---------s~~l~~~f~V~~~PtIvvfk~~~~~p~-~y~g~~~~~~L~~fI~ 361 (689)
..|.+..++..|. +.+..|.+.... ...+.++|+|...|+++++++++.... ...|.++.+.|.+.|.
T Consensus 184 ~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~ 261 (271)
T TIGR02740 184 QAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRIL 261 (271)
T ss_pred HhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHH
Confidence 3567777777663 445555432211 245789999999999999997443322 3468888888888764
Q ss_pred h
Q 005592 362 Q 362 (689)
Q Consensus 362 ~ 362 (689)
.
T Consensus 262 ~ 262 (271)
T TIGR02740 262 L 262 (271)
T ss_pred H
Confidence 3
No 341
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=79.50 E-value=6.4 Score=46.08 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=42.0
Q ss_pred CceEEEEEeccc--ccHHHHhhcCCCCCCEEEEEeCCCCC--ceeecCCCChHHHHHHHHh
Q 005592 306 YASFAFVLWREE--ESSIWWNTFEVESAPAIVFLKDPGVK--PVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 306 ~~~f~~V~~~~~--~s~~l~~~f~V~~~PtIvvfk~~~~~--p~~y~g~~~~~~L~~fI~~ 362 (689)
.+.+..+.+.+. +..++.++|++...|++++|+.+++. ...+.|..+.+.+.+++++
T Consensus 508 ~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 508 DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence 355666665543 23579999999999999999865544 2345788899999988875
No 342
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=79.25 E-value=8.2 Score=37.02 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=34.7
Q ss_pred HHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHh
Q 005592 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~ 362 (689)
..+.+.|++...|+++++.+++.....+.|..+.+.+.++++.
T Consensus 128 ~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 128 RQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred chHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 5688999999999999997766544456888888889888865
No 343
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=78.49 E-value=1.7 Score=43.82 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=29.6
Q ss_pred CCCEEEEEEcCCCcCCcCchHHH---HHHHHHHhcccceeeeec
Q 005592 153 SKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVEL 193 (689)
Q Consensus 153 ~~~~LV~FYapwC~~Ck~l~p~w---~~~A~~L~~~~~vg~Vdc 193 (689)
+++-+|+|++..|+||.++.|.+ ..+-+.+.+.+.+..+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 35679999999999999999865 666666654444444443
No 344
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=78.45 E-value=1.6 Score=41.38 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=32.1
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHHHHHH--hcccceeeeec
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVEL 193 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L--~~~~~vg~Vdc 193 (689)
+..+.+++|+.+.|+||.++.+...++.+.+ .+.+.+.-++.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 5677889999999999999999998888887 55555444443
No 345
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=77.49 E-value=2.6 Score=37.39 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=33.1
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhH----HHhhCCCCcccccccccEEEEcCCC
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH----LAERKPIGQIFFRRGLPSLVAFPPG 226 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~----L~~k~~~~~~f~V~gyPTL~~f~~g 226 (689)
++.|-.|||++|.+....+.+. .+.+..+|.+++..... +.+..| ...+|+| |.+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg------~~tvP~V--fi~g 69 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGC------SPAVPAV--FVGG 69 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcC------CCCcCeE--EECC
Confidence 6788899999999877655442 13445666654322222 222223 5688987 4555
No 346
>PRK10638 glutaredoxin 3; Provisional
Probab=76.70 E-value=3.8 Score=34.72 Aligned_cols=54 Identities=9% Similarity=0.143 Sum_probs=32.8
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhh-hhhHHHhhCCCCcccccccccEEEE
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVA 222 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~-~~~~L~~k~~~~~~f~V~gyPTL~~ 222 (689)
++.|..+||++|++..-.+++. + +.+..+|++++. ....+.+..| ...+|+|.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----g-i~y~~~dv~~~~~~~~~l~~~~g------~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----G-VSFQEIPIDGDAAKREEMIKRSG------RTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----C-CCcEEEECCCCHHHHHHHHHHhC------CCCcCEEEE
Confidence 4566679999999877555532 2 355667776443 2223444445 568898743
No 347
>PHA03050 glutaredoxin; Provisional
Probab=76.49 E-value=2.1 Score=38.72 Aligned_cols=56 Identities=7% Similarity=0.065 Sum_probs=32.7
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecch---hhh-hhHHHhhCCCCcccccccccEEE
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD---IRL-ATHLAERKPIGQIFFRRGLPSLV 221 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~---~~~-~~~L~~k~~~~~~f~V~gyPTL~ 221 (689)
++.|..+||++|++....+++..-+. ..+-.+|.++ ... ...+-+..| ...+|+|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG------~~tVP~If 74 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITG------GRTVPRIF 74 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcC------CCCcCEEE
Confidence 77899999999998877666532110 1344555553 111 122334445 56899984
No 348
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=74.95 E-value=3.8 Score=35.47 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=30.1
Q ss_pred CCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhh-hHHHhhCCCCcccccccccEEEEcCCC
Q 005592 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVAFPPG 226 (689)
Q Consensus 163 pwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~-~~L~~k~~~~~~f~V~gyPTL~~f~~g 226 (689)
|||++|++....+++.. +.+-.+|..++... ..+.+..| ...+|+| |.+|
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g------~~tvP~v--fi~g 71 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSN------WPTFPQL--YVNG 71 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhC------CCCCCEE--EECC
Confidence 79999988775554421 46667776644332 22444445 5688987 3445
No 349
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=72.86 E-value=5.3 Score=33.93 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=31.4
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcc-cceeeeecchhh--hhhHHHhhC-CCCcccccccccEEEE
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR--LATHLAERK-PIGQIFFRRGLPSLVA 222 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~-~~vg~Vdc~~~~--~~~~L~~k~-~~~~~f~V~gyPTL~~ 222 (689)
++.|--++|++|++....+. .. +.+-.++.+.+. ......++. | .+.+|+|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~g------~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGKG------QRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhCC------CCCcCEEEE
Confidence 46677899999988665444 22 255555555433 222233333 4 679998765
No 350
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=71.95 E-value=4.3 Score=34.42 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=51.1
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCCcccc
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~Y 236 (689)
++.|..|.|.-|..+.....+++.. ..+.+-.||.+++.. +-++|+ . ..|.|.+=..+... .....
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~--~~~~l~~vDI~~d~~---l~~~Y~------~-~IPVl~~~~~~~~~--~~~~~ 67 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE--FPFELEEVDIDEDPE---LFEKYG------Y-RIPVLHIDGIRQFK--EQEEL 67 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT--STCEEEEEETTTTHH---HHHHSC------T-STSEEEETT-GGGC--TSEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh--cCceEEEEECCCCHH---HHHHhc------C-CCCEEEEcCccccc--cccee
Confidence 6788899999998876655543222 225788999986654 778886 2 67987654422110 12344
Q ss_pred ccccCHHHHHHHHH
Q 005592 237 EGELSVDAVTDWFA 250 (689)
Q Consensus 237 ~G~rs~~~Iv~fv~ 250 (689)
.+..+.+.|.+|++
T Consensus 68 ~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 68 KWRFDEEQLRAWLE 81 (81)
T ss_dssp ESSB-HHHHHHHHH
T ss_pred CCCCCHHHHHHHhC
Confidence 67788899988863
No 351
>PRK13189 peroxiredoxin; Provisional
Probab=71.22 E-value=4.8 Score=41.19 Aligned_cols=42 Identities=10% Similarity=-0.002 Sum_probs=33.4
Q ss_pred CEEEEEEcCCCcCCcCchHHHHHHHHHHhccc-ceeeeecchh
Q 005592 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDI 196 (689)
Q Consensus 155 ~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~~~ 196 (689)
.+|+.|.++||+.|..-.+.+.+++.+++... .|..|.++..
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~ 80 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQV 80 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCH
Confidence 44556679999999999999999999997653 7777887743
No 352
>smart00594 UAS UAS domain.
Probab=70.84 E-value=24 Score=32.19 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=33.5
Q ss_pred EEecccccHHHHhhcCCCCCCEEEEEeCCCCC---ce--eecCCCChHHHHHHH
Q 005592 312 VLWREEESSIWWNTFEVESAPAIVFLKDPGVK---PV--VYYGSFNNSRLSEVM 360 (689)
Q Consensus 312 V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~---p~--~y~g~~~~~~L~~fI 360 (689)
+.+.+.+...+.+.|++.++|+++++...+.. .+ ...|..+.+.|..++
T Consensus 68 ~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 68 VDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 44334344679999999999999999765421 11 247888877776654
No 353
>PRK13191 putative peroxiredoxin; Provisional
Probab=70.75 E-value=6.2 Score=40.14 Aligned_cols=41 Identities=7% Similarity=-0.059 Sum_probs=33.7
Q ss_pred EEEEEEcCCCcCCcCchHHHHHHHHHHhccc-ceeeeecchh
Q 005592 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDI 196 (689)
Q Consensus 156 ~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~~~ 196 (689)
+|+.|.++||+.|..-.+.+.+.+.+++... .|..|.++..
T Consensus 37 vLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~ 78 (215)
T PRK13191 37 VLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN 78 (215)
T ss_pred EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 3447779999999999999999999997654 7888888743
No 354
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=69.21 E-value=13 Score=38.81 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=22.2
Q ss_pred CCCCEEEEEEcCCCcCCcCchHHHHHH
Q 005592 152 DSKPWLIQVYSDGSYLCGQFSGAWKTI 178 (689)
Q Consensus 152 ~~~~~LV~FYapwC~~Ck~l~p~w~~~ 178 (689)
+.+..++.|.-|.|++|+++.++..+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~ 142 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPW 142 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHH
Confidence 456788999999999999998776554
No 355
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=67.96 E-value=6.7 Score=34.70 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHH
Q 005592 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI 360 (689)
.++.+.|+|...||++++...+.....+.|-.+.+.|.+++
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 46899999999999999975555444568988888887653
No 356
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=67.28 E-value=9.9 Score=33.49 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=28.3
Q ss_pred CCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhh-HHHhhCCCCcccccccccEEE
Q 005592 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLAT-HLAERKPIGQIFFRRGLPSLV 221 (689)
Q Consensus 163 pwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~-~L~~k~~~~~~f~V~gyPTL~ 221 (689)
|||++|++....+.+. + +.+-.+|..++.... .+.+..| ...+|+|+
T Consensus 25 ~~Cp~C~~ak~lL~~~-----~-i~~~~~di~~~~~~~~~l~~~tg------~~tvP~vf 72 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-----G-VPFAYVNVLEDPEIRQGIKEYSN------WPTIPQLY 72 (97)
T ss_pred CCCchHHHHHHHHHHc-----C-CCEEEEECCCCHHHHHHHHHHhC------CCCCCEEE
Confidence 8999999877666542 1 355667765443322 2334334 55888874
No 357
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=65.38 E-value=25 Score=31.70 Aligned_cols=93 Identities=17% Similarity=0.114 Sum_probs=44.0
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEeCCCCCCcHH--HHH---HHHhcccCceEEEEEeccc--ccHHHHhhcCCCC-CCE
Q 005592 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPF--VRQ---ISRNYWAYASFAFVLWREE--ESSIWWNTFEVES-APA 333 (689)
Q Consensus 262 it~~~~~~~Fl~~~~~~k~~Vl~f~~~~~~~~~~--~~~---~A~~~~~~~~f~~V~~~~~--~s~~l~~~f~V~~-~Pt 333 (689)
+++.+.+++++... .+++.+||=-++ .|+... ++. ......+.+.++++.+... -+..++.+|||.. -|-
T Consensus 4 L~t~eql~~i~~~S-~~~~~~iFKHSt-~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 4 LTTEEQLEEILEES-KEKPVLIFKHST-RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp --SHHHHHHHHHH----SEEEEEEE-T-T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred cCCHHHHHHHHHhc-ccCcEEEEEeCC-CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 34444477777653 345644443222 233221 111 2222222377888887654 2478999999985 899
Q ss_pred EEEEeCCCCCceeecCCCChHHH
Q 005592 334 IVFLKDPGVKPVVYYGSFNNSRL 356 (689)
Q Consensus 334 Ivvfk~~~~~p~~y~g~~~~~~L 356 (689)
+++++++...-..-+..++.+.|
T Consensus 82 ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEEECCEEEEECccccCCHHhc
Confidence 99999854322222555666554
No 358
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=64.89 E-value=33 Score=30.70 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=28.9
Q ss_pred HHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHH
Q 005592 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSE 358 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~ 358 (689)
..+++.|+|...|+++++..++ ....+.|..+.+.|.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 5699999999999999998765 4334577777776643
No 359
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=60.62 E-value=17 Score=34.85 Aligned_cols=54 Identities=13% Similarity=-0.017 Sum_probs=39.8
Q ss_pred CCEEEEEE-cCCCcCCcCc-hHHHHHHHHHHhccc--ceeeeecchhhhhhHHHhhCC
Q 005592 154 KPWLIQVY-SDGSYLCGQF-SGAWKTIAALLEGIA--NTGMVELGDIRLATHLAERKP 207 (689)
Q Consensus 154 ~~~LV~FY-apwC~~Ck~l-~p~w~~~A~~L~~~~--~vg~Vdc~~~~~~~~L~~k~~ 207 (689)
++.++.|| +.||+.|..- .+.+.+...+++..+ .|..|.++........|++.+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~ 87 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALG 87 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhC
Confidence 34555555 6799999997 999999999997654 488888885555555677765
No 360
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=60.50 E-value=31 Score=39.86 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=33.6
Q ss_pred HHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHH
Q 005592 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME 361 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~ 361 (689)
..+.+.|+|...|+++++.+++.....+.|.++.+.|.++|+
T Consensus 129 ~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 568899999999999887655544344689999999999887
No 361
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=60.06 E-value=7.4 Score=36.37 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=50.6
Q ss_pred CCCCCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccE-EEEcCCC
Q 005592 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS-LVAFPPG 226 (689)
Q Consensus 151 ~~~~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPT-L~~f~~g 226 (689)
..++.++|-|-.+|.+.|.++-....++|+.++....|..||.++-+. +.+-|. +. -|. +++|-++
T Consensus 18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpd---fn~~ye------l~-dP~tvmFF~rn 84 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPD---FNQMYE------LY-DPCTVMFFFRN 84 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHC---CHHHTT------S--SSEEEEEEETT
T ss_pred cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchh---hhcccc------cC-CCeEEEEEecC
Confidence 467889999999999999999999999999999999999999995443 445554 55 554 6666344
No 362
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=59.25 E-value=26 Score=31.99 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=19.0
Q ss_pred HHHHhhcCCCCCCEEEEEeCCCC
Q 005592 320 SIWWNTFEVESAPAIVFLKDPGV 342 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~~~ 342 (689)
..+.+.|+|...|+++++..++.
T Consensus 89 ~~~~~~~~v~~~P~~~lid~~G~ 111 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDADGE 111 (131)
T ss_pred HHHHHHcCCCCCCEEEEECCCCC
Confidence 45788999999999999976553
No 363
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.13 E-value=42 Score=34.89 Aligned_cols=70 Identities=21% Similarity=0.187 Sum_probs=49.8
Q ss_pred CCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHhc
Q 005592 289 GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (689)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~~ 363 (689)
++...|.+..+|.+|. ..-|..|.+..| +..+..+||+..||.++|..+... ..+.|- +...|++-|..+
T Consensus 36 Ck~IaP~Fs~lankYp-~aVFlkVdVd~c--~~taa~~gV~amPTFiff~ng~ki-d~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 36 CKRIAPIFSDLANKYP-GAVFLKVDVDEC--RGTAATNGVNAMPTFIFFRNGVKI-DQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred HHhhhhHHHHhhhhCc-ccEEEEEeHHHh--hchhhhcCcccCceEEEEecCeEe-eeecCC-CHHHHHHHHHHH
Confidence 3456788888999884 455777776554 468889999999999999875432 235554 667777776554
No 364
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=58.12 E-value=21 Score=41.20 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=42.5
Q ss_pred CCCCCcHHHHHHHHhcccCceEEEEEeccccc---HHHHhhcCCCCCCEEEEEeCCC
Q 005592 288 TGERASPFVRQISRNYWAYASFAFVLWREEES---SIWWNTFEVESAPAIVFLKDPG 341 (689)
Q Consensus 288 ~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s---~~l~~~f~V~~~PtIvvfk~~~ 341 (689)
++-...|.++.+|....+-.....|...+|.. ..+|.+|+|..+|+|.+|+.+.
T Consensus 71 hCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~ 127 (606)
T KOG1731|consen 71 HCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDS 127 (606)
T ss_pred hhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCcc
Confidence 44456788888888776666677777777743 6799999999999999998764
No 365
>PF13728 TraF: F plasmid transfer operon protein
Probab=57.21 E-value=59 Score=33.11 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=42.9
Q ss_pred CcHHHHHHHHhcccCceEEEEEeccc---------ccHHHHhhcCCCCCCEEEEEeCCCCCce-eecCCCChHHHHH
Q 005592 292 ASPFVRQISRNYWAYASFAFVLWREE---------ESSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSFNNSRLSE 358 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~V~~~~~---------~s~~l~~~f~V~~~PtIvvfk~~~~~p~-~y~g~~~~~~L~~ 358 (689)
..+.++..+..| ......|..... ....+.++|+|...|++++...++.+.. +-.|-++.++|.+
T Consensus 138 ~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 138 QAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPVSQGFMSLDELED 212 (215)
T ss_pred HHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHH
Confidence 356777777766 344444443210 1356889999999999999988774432 2468788777754
No 366
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.75 E-value=19 Score=36.56 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=44.1
Q ss_pred CcEEEEEEe---CCCCCCcHHHHHHHHhcc-cCceEEEEEecccccHHHHhhcCCC------CCCEEEEEeCCC
Q 005592 278 HKVKVIFFS---KTGERASPFVRQISRNYW-AYASFAFVLWREEESSIWWNTFEVE------SAPAIVFLKDPG 341 (689)
Q Consensus 278 ~k~~Vl~f~---~~~~~~~~~~~~~A~~~~-~~~~f~~V~~~~~~s~~l~~~f~V~------~~PtIvvfk~~~ 341 (689)
.-|.+-||. +++.+.+|.+..++..|. ...+||.|..+- -.+...+|+|. ..||+++|+++.
T Consensus 145 t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr--fpd~a~kfris~s~~srQLPT~ilFq~gk 216 (265)
T KOG0914|consen 145 TYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR--FPDVAAKFRISLSPGSRQLPTYILFQKGK 216 (265)
T ss_pred eEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc--CcChHHheeeccCcccccCCeEEEEccch
Confidence 346666773 345556777777777765 467899998764 35688999985 389999998754
No 367
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=56.11 E-value=30 Score=27.44 Aligned_cols=40 Identities=23% Similarity=0.132 Sum_probs=26.4
Q ss_pred HHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEE
Q 005592 294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (689)
Q Consensus 294 ~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvv 336 (689)
+.+..++..+ ..+.|..+...+ .+++.++|++.+.|++++
T Consensus 19 ~~l~~l~~~~-~~i~~~~id~~~--~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 19 QAANRIAALN-PNISAEMIDAAE--FPDLADEYGVMSVPAIVI 58 (67)
T ss_pred HHHHHHHHhC-CceEEEEEEccc--CHhHHHHcCCcccCEEEE
Confidence 4444454432 346676765432 467999999999999876
No 368
>PRK10824 glutaredoxin-4; Provisional
Probab=55.01 E-value=14 Score=33.87 Aligned_cols=28 Identities=11% Similarity=-0.002 Sum_probs=17.7
Q ss_pred CCCcCCcCchHHHHHHHHHHhcccceeeeecchh
Q 005592 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI 196 (689)
Q Consensus 163 pwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~ 196 (689)
|||++|++....+.+.. +.+..+|..++
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d 55 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQN 55 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCC
Confidence 79999998776665431 24445565543
No 369
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=54.43 E-value=11 Score=40.83 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCC-------CcHHHHHHHHHHHHHcCChhhhhhhhccC
Q 005592 49 SSVEQVKEAYEKFSSKWNSGEEI-------PSTADFLKIQYAYELLTDPLWKRNYDVYG 100 (689)
Q Consensus 49 as~~eIk~ayr~l~~~~HPDk~~-------~~~~~f~~i~~AyevL~d~~~R~~YD~~g 100 (689)
++..+|+.+|+..+...||++-. ...+.|.+|.+||++|++.+.|...|.+-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 56788999999999999999542 34567999999999999866666766543
No 370
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=53.63 E-value=14 Score=41.38 Aligned_cols=60 Identities=8% Similarity=-0.002 Sum_probs=33.6
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCC---CCcccccccccEEEE
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP---IGQIFFRRGLPSLVA 222 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~---~~~~f~V~gyPTL~~ 222 (689)
++.|..|||++|++....+.+. | +.+-.||.+++.....+-++.+ ..+..+.+.+|+|++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----g-i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----D-IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C-CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6788899999998876544431 2 3566777775443222212211 000111668899855
No 371
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=53.53 E-value=37 Score=28.21 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=35.7
Q ss_pred cHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCC-ChHHHHHHH
Q 005592 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVM 360 (689)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~-~~~~L~~fI 360 (689)
.+.++.++.++...+.|..+. ......+|++.+.|++++ + +.. .+.|.. +.+.|.+++
T Consensus 17 ~~~~~~~~~e~~~~~~~~~v~-----~~~~a~~~~v~~vPti~i--~-G~~--~~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 17 EKNVKKAVEELGIDAEFEKVT-----DMNEILEAGVTATPGVAV--D-GEL--VIMGKIPSKEEIKEIL 75 (76)
T ss_pred HHHHHHHHHHcCCCeEEEEeC-----CHHHHHHcCCCcCCEEEE--C-CEE--EEEeccCCHHHHHHHh
Confidence 455566777665455554443 233467899999999999 3 322 266653 446676665
No 372
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=52.06 E-value=22 Score=35.66 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcC
Q 005592 46 KPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (689)
Q Consensus 46 ~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~AyevL~ 88 (689)
+++||.+||.+|+.++..+|- ++++.-.+|-.||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~-----gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYA-----GDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHH
Confidence 578999999999999999983 34567788999999654
No 373
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=51.08 E-value=47 Score=33.66 Aligned_cols=82 Identities=12% Similarity=0.158 Sum_probs=50.1
Q ss_pred EEEEEEeCC---CCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCce------eecCC
Q 005592 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPV------VYYGS 350 (689)
Q Consensus 280 ~~Vl~f~~~---~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~------~y~g~ 350 (689)
++|.++.+. ++.....+.-+|..| ..++|..+..+.. ..-.+|..+..|++++|+.+.--.. .+..+
T Consensus 162 i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~---gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlged 237 (273)
T KOG3171|consen 162 IVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNT---GASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGED 237 (273)
T ss_pred EEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeeccc---cchhhhcccCCceEEEeeCCchhHHHHHHHHHHhhh
Confidence 445556532 122333445577776 5678888765443 3567888888999999997653211 01334
Q ss_pred CChHHHHHHHHhcCC
Q 005592 351 FNNSRLSEVMEQNKL 365 (689)
Q Consensus 351 ~~~~~L~~fI~~~k~ 365 (689)
+...+|..|++...+
T Consensus 238 ffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 238 FFAGDLESFLNEYGL 252 (273)
T ss_pred hhhhhHHHHHHHcCC
Confidence 566778888876543
No 374
>PF13446 RPT: A repeated domain in UCH-protein
Probab=51.02 E-value=15 Score=29.46 Aligned_cols=44 Identities=14% Similarity=0.242 Sum_probs=32.5
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHcCC
Q 005592 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTD 89 (689)
Q Consensus 38 d~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~AyevL~d 89 (689)
+-|+.|||+++.+.+.|-.+|+.... -.| .......+|..++.+
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P-------~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN-DDP-------SQKDTLREALRVIAE 49 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH-cCh-------HhHHHHHHHHHHHHH
Confidence 56899999999999999999999887 122 234445666666553
No 375
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=49.87 E-value=94 Score=26.79 Aligned_cols=68 Identities=9% Similarity=0.019 Sum_probs=38.7
Q ss_pred cEEEEEEe-CCC-CCC--cHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChH
Q 005592 279 KVKVIFFS-KTG-ERA--SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (689)
Q Consensus 279 k~~Vl~f~-~~~-~~~--~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~ 354 (689)
.+.+.+|. ..+ .|. ...+..++..+ ..+.|..+... +..++.++|+|.+.|++++ + +. ..+.|..+.+
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~--~~~e~a~~~~V~~vPt~vi--d-G~--~~~~G~~~~~ 84 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGA--LFQDEVEERGIMSVPAIFL--N-GE--LFGFGRMTLE 84 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhH--hCHHHHHHcCCccCCEEEE--C-CE--EEEeCCCCHH
Confidence 35566664 322 232 24445566543 34666666533 2467999999999999975 3 22 3456654433
No 376
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=48.64 E-value=20 Score=32.62 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=34.8
Q ss_pred CCcEEEEEEeCC-C---CCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCC--CCEEEEEeCCCC
Q 005592 277 PHKVKVIFFSKT-G---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGV 342 (689)
Q Consensus 277 ~~k~~Vl~f~~~-~---~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~--~PtIvvfk~~~~ 342 (689)
.+++.+|.|... | ....+.+...+..+.....|..|.+... .......|++.+ .||+++|...+.
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~-~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDD-EEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC-CCchhhhcccCCCccceEEEECCCCC
Confidence 466777766432 1 1122333332222222345666655432 234567888876 899999975443
No 377
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=47.38 E-value=1.5e+02 Score=27.69 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=41.3
Q ss_pred hhhhhhhcCCCcEEEEEEeCCCCCCc----HHHHHHHHhcccCceEEEEEeccccc-HHHHhhcCCCCCCEEEEEeCCC
Q 005592 268 GKNFLAKTGPHKVKVIFFSKTGERAS----PFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPG 341 (689)
Q Consensus 268 ~~~Fl~~~~~~k~~Vl~f~~~~~~~~----~~~~~~A~~~~~~~~f~~V~~~~~~s-~~l~~~f~V~~~PtIvvfk~~~ 341 (689)
+++-+.+ ...++.|+=|+...+..- -.+...|.. ..+|+.++..+.++ ++..+-|++...|++++|-.+.
T Consensus 14 VdqaI~~-t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~---vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 14 VDQAILS-TEERLVVIRFGRDWDPTCMKMDELLSSIAED---VSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred HHHHHhc-ccceEEEEEecCCCCchHhhHHHHHHHHHHH---HhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 4444433 246788888986543111 122223333 34556666555433 7899999999999988876543
No 378
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=46.29 E-value=30 Score=31.03 Aligned_cols=92 Identities=13% Similarity=0.084 Sum_probs=57.0
Q ss_pred CCCccccCCC-CCEEEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecchhhhhhHHHhhCCCCcccccccccEEEE
Q 005592 144 EDFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (689)
Q Consensus 144 ~nF~~~I~~~-~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~ 222 (689)
++.+..+... .+.+|=|+..--+ .....|.++|..+.....++...-. . +..+++ + ..|.+++
T Consensus 9 ~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~---~---~~~~~~------~-~~~~vvl 72 (107)
T cd03068 9 KQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDS---E---IFKSLK------V-SPGQLVV 72 (107)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChH---H---HHHhcC------C-CCCceEE
Confidence 3455555444 6777766665433 4567899999998776777665533 2 445555 4 3577888
Q ss_pred cCCCCC---CCCCccccccc-cCHHH-HHHHHHH
Q 005592 223 FPPGCK---SSDCMTRFEGE-LSVDA-VTDWFAT 251 (689)
Q Consensus 223 f~~g~~---~~~~~~~Y~G~-rs~~~-Iv~fv~k 251 (689)
|++..- ..+....|.|. .+.++ |..|++.
T Consensus 73 ~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 73 FQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred ECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 855421 11224567887 56656 9999864
No 379
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=45.48 E-value=54 Score=29.57 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=25.0
Q ss_pred HHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHH
Q 005592 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L 356 (689)
..+.+.|++...|+.+++...+.....+.|.++.+.|
T Consensus 90 ~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 90 GRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred chHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 4578889999999777775555444446777765543
No 380
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=44.92 E-value=82 Score=26.73 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=18.2
Q ss_pred HHHHhhcCCCCCCEEEEEeCCCC
Q 005592 320 SIWWNTFEVESAPAIVFLKDPGV 342 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~~~ 342 (689)
..+.+.|++...|+++++.+.+.
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDRDGR 109 (116)
T ss_pred chHHHhcCcCccceEEEECCCCc
Confidence 56888999988999998865553
No 381
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=44.41 E-value=1.4e+02 Score=27.50 Aligned_cols=18 Identities=22% Similarity=0.030 Sum_probs=14.9
Q ss_pred hcCCCCCCEEEEEeCCCC
Q 005592 325 TFEVESAPAIVFLKDPGV 342 (689)
Q Consensus 325 ~f~V~~~PtIvvfk~~~~ 342 (689)
.|++.+.|+++++...+.
T Consensus 75 ~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 75 MTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred hcCCCCCCEEEEECCCCC
Confidence 468889999999987664
No 382
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=44.11 E-value=57 Score=29.90 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=18.0
Q ss_pred HHHHhhcCCCCCCEEEEEeCCC
Q 005592 320 SIWWNTFEVESAPAIVFLKDPG 341 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~~ 341 (689)
..+.+.|+|...|+++++..++
T Consensus 89 ~~~~~~~~v~~iPt~~lid~~G 110 (132)
T cd02964 89 ELLEKQFKVEGIPTLVVLKPDG 110 (132)
T ss_pred HHHHHHcCCCCCCEEEEECCCC
Confidence 4577789999999999997654
No 383
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=42.76 E-value=1.1e+02 Score=25.84 Aligned_cols=60 Identities=15% Similarity=0.295 Sum_probs=36.1
Q ss_pred CcEEEEEEeCCCCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCC
Q 005592 278 HKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (689)
Q Consensus 278 ~k~~Vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~ 341 (689)
..+.+|+++-.. ....++.....+ ...+..+...+.....+.+.|+|...|+++++..++
T Consensus 34 ~~v~~v~Vs~d~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~G 93 (95)
T PF13905_consen 34 DDVEFVFVSLDE--DEEEWKKFLKKN--NFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPDG 93 (95)
T ss_dssp TTEEEEEEE-SS--SHHHHHHHHHTC--TTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETTS
T ss_pred CCEEEEEEEeCC--CHHHHHHHHHhc--CCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCCC
Confidence 346677766432 223343333322 235566665554457899999999999999997654
No 384
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.84 E-value=49 Score=32.06 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=27.6
Q ss_pred HHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHH
Q 005592 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L 356 (689)
++|++.|+|++.|++++|...++.-....|-++.+.+
T Consensus 105 ~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~F 141 (182)
T COG2143 105 EELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQF 141 (182)
T ss_pred HHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHH
Confidence 6899999999999999998766543223566666544
No 385
>PF15096 G6B: G6B family
Probab=41.04 E-value=28 Score=34.27 Aligned_cols=26 Identities=27% Similarity=0.654 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCC
Q 005592 614 LLAALMSFGTIWLMRGQQRAHPSQSG 639 (689)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (689)
|..|+-.+|.+|+.|+++-.||...-
T Consensus 135 L~LGLgalG~~ww~rrrspp~p~~p~ 160 (224)
T PF15096_consen 135 LVLGLGALGVVWWLRRRSPPHPPRPL 160 (224)
T ss_pred hhhccccchheeeeeccCCCCCCCCC
Confidence 34455567899999998867776643
No 386
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=39.71 E-value=1.5e+02 Score=28.49 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=41.7
Q ss_pred CcHHHHHHHHhcccCceEEEEEecccc----------cHHH-Hhhc---CCCCCCEEEEEeCCCCCce-eecCCCChHHH
Q 005592 292 ASPFVRQISRNYWAYASFAFVLWREEE----------SSIW-WNTF---EVESAPAIVFLKDPGVKPV-VYYGSFNNSRL 356 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~V~~~~~~----------s~~l-~~~f---~V~~~PtIvvfk~~~~~p~-~y~g~~~~~~L 356 (689)
..|.+..++..|. ..+..|...+.. ...+ ...| ++...|+.+++...+.... .+.|.++.+.|
T Consensus 68 e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l 145 (153)
T TIGR02738 68 FAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGAVDEAEL 145 (153)
T ss_pred HHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecccCHHHH
Confidence 3566666666652 444455433211 1222 3445 7788999999977654322 46788888888
Q ss_pred HHHHHh
Q 005592 357 SEVMEQ 362 (689)
Q Consensus 357 ~~fI~~ 362 (689)
.+.|..
T Consensus 146 ~~~I~~ 151 (153)
T TIGR02738 146 ANRMDE 151 (153)
T ss_pred HHHHHH
Confidence 877654
No 387
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=38.92 E-value=14 Score=36.28 Aligned_cols=28 Identities=7% Similarity=0.012 Sum_probs=22.9
Q ss_pred EEEcCCCcCCcCchHHHHHHHHHHhccc
Q 005592 159 QVYSDGSYLCGQFSGAWKTIAALLEGIA 186 (689)
Q Consensus 159 ~FYapwC~~Ck~l~p~w~~~A~~L~~~~ 186 (689)
.|..|.|+.|-.++|.|.++..++...+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i 29 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKI 29 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcE
Confidence 5899999999999999999999998754
No 388
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=38.54 E-value=45 Score=29.98 Aligned_cols=34 Identities=6% Similarity=0.009 Sum_probs=23.4
Q ss_pred EEEEEcCCCcCCcCchHHHHHHHHHHhcccceeeeecc
Q 005592 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG 194 (689)
Q Consensus 157 LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~~vg~Vdc~ 194 (689)
+|.|-.+||..|+++...|.+ +.....+..+|-.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~ 49 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDED 49 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCC
Confidence 467888999999997777765 3333356666654
No 389
>PF08082 PRO8NT: PRO8NT (NUC069), PrP8 N-terminal domain; InterPro: IPR012591 Pre-mRNA-processing-splicing factor 8 is a central component of the spliceosome, which may play a role in aligning the pre-mRNA 5'- and 3'-exons for ligation. It interacts with U5 snRNA, and with pre-mRNA 5'-splice sites in B spliceosomes and 3'-splice sites in C spliceosomes. It is part of the U5 snRNP complex, and of U5.4/6 and U5.U4atac/U6atac snRNP complexes in U2- and U12-dependent spliceosomes, respectively. It is also found in a mRNA splicing-dependent exon junction complex (EJC) with SRRM1 where it interacts with U5 snRNP proteins SNRP116 and WDR57/SPF38 [, ].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=38.35 E-value=28 Score=33.09 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=18.3
Q ss_pred CCCCCCCCccccccccCCCCC
Q 005592 668 PSITDEEPKDAYQMPLLDSDS 688 (689)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~ 688 (689)
..|.|.||-+|.||+|...|+
T Consensus 123 dni~dvep~~~i~~~ld~~~d 143 (152)
T PF08082_consen 123 DNILDVEPLEAIQMELDEEED 143 (152)
T ss_pred hccccCCCCcccccccccccc
Confidence 578999999999999987665
No 390
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=37.91 E-value=3.5e+02 Score=29.25 Aligned_cols=99 Identities=9% Similarity=0.201 Sum_probs=56.2
Q ss_pred cccchhhhhhhhhcCCCcEEEEEEeC---CCCC---CcH--HHHHHHHhccc--------CceEEEEEecccccHHHHhh
Q 005592 262 YTKESMGKNFLAKTGPHKVKVIFFSK---TGER---ASP--FVRQISRNYWA--------YASFAFVLWREEESSIWWNT 325 (689)
Q Consensus 262 it~~~~~~~Fl~~~~~~k~~Vl~f~~---~~~~---~~~--~~~~~A~~~~~--------~~~f~~V~~~~~~s~~l~~~ 325 (689)
.++++ ...|+...+.|--.+++|+. +..| ... .+..+|..++. ++-|..|... +.+++.+.
T Consensus 45 ~n~d~-~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~--e~p~~Fq~ 121 (331)
T KOG2603|consen 45 MNDDK-FSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYD--ESPQVFQQ 121 (331)
T ss_pred ecCcc-hhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecc--ccHHHHHH
Confidence 34444 67888754445555666642 1112 111 12224444332 3346666543 36889999
Q ss_pred cCCCCCCEEEEEeCCCCCce---eec-C--CCChHHHHHHHHhc
Q 005592 326 FEVESAPAIVFLKDPGVKPV---VYY-G--SFNNSRLSEVMEQN 363 (689)
Q Consensus 326 f~V~~~PtIvvfk~~~~~p~---~y~-g--~~~~~~L~~fI~~~ 363 (689)
|++++.|.+++|++....+. .+. + ....+.+.+|++..
T Consensus 122 l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 122 LNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred hcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 99999999999976543221 111 1 12467788888653
No 391
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=36.35 E-value=55 Score=25.79 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=20.5
Q ss_pred HHHHhccc----cCCCchhHHHHHHHHHHHHHHHhhccccCCCC
Q 005592 596 IMGQCYDY----LGDPRIGPALLLAALMSFGTIWLMRGQQRAHP 635 (689)
Q Consensus 596 ~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 635 (689)
+.+.+.|+ ++-......+++++++....+++.++++ +||
T Consensus 13 lGt~~~D~l~~~lglg~~~~~~~~~~~l~~~~~~~~~~~~-~~p 55 (55)
T PF03988_consen 13 LGTTAGDFLSKTLGLGYLISTLIFAALLAVVLALWYRSKR-YRP 55 (55)
T ss_pred hHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhc-cCC
Confidence 45555554 4445555566776655554444444443 555
No 392
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=36.14 E-value=2.8e+02 Score=25.25 Aligned_cols=42 Identities=7% Similarity=0.006 Sum_probs=29.6
Q ss_pred HHHHhhcCCCCCCEEEEEeCCCCCce---eecCCCChHHHHHHHH
Q 005592 320 SIWWNTFEVESAPAIVFLKDPGVKPV---VYYGSFNNSRLSEVME 361 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~~~~p~---~y~g~~~~~~L~~fI~ 361 (689)
..++..+++.++|+++++-..+..-. ...|..+.++|...+.
T Consensus 66 ~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~ 110 (116)
T cd02991 66 YRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLT 110 (116)
T ss_pred HHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHH
Confidence 56999999999999998843222211 2488888888766543
No 393
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=35.59 E-value=1.3e+02 Score=38.12 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=53.0
Q ss_pred CcEEEEEE-eC---CCCCCcHHHHHHHHhcccCceEEEEEec----cc-----------------------ccHHHHhhc
Q 005592 278 HKVKVIFF-SK---TGERASPFVRQISRNYWAYASFAFVLWR----EE-----------------------ESSIWWNTF 326 (689)
Q Consensus 278 ~k~~Vl~f-~~---~~~~~~~~~~~~A~~~~~~~~f~~V~~~----~~-----------------------~s~~l~~~f 326 (689)
+++.||.| .. .|....|.+..+..+|.+. .|..+.+. +. ....+.+.|
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 46666655 32 2333467777777777643 23333321 11 123567889
Q ss_pred CCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHhc
Q 005592 327 EVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (689)
Q Consensus 327 ~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~~ 363 (689)
+|...|+.+++...+.....+.|+...+.|.+++...
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 9999999999966565444467888888888876543
No 394
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=35.51 E-value=53 Score=38.15 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=43.0
Q ss_pred eEEEEEeccc--ccHHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHhc
Q 005592 308 SFAFVLWREE--ESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (689)
Q Consensus 308 ~f~~V~~~~~--~s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~~ 363 (689)
.+-.+.++.. +..++.++|++-+.|++++|..++.++....|.++.+.+.+++++.
T Consensus 510 vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 510 VLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 3444444443 3367899999999999999997777776688889999999988753
No 395
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=35.33 E-value=1.9e+02 Score=30.39 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=42.5
Q ss_pred CcHHHHHHHHhcccCceEEEEEeccc---------ccHHHHhhcCCCCCCEEEEEeCCCCCcee-ecCCCChHHHHHH
Q 005592 292 ASPFVRQISRNYWAYASFAFVLWREE---------ESSIWWNTFEVESAPAIVFLKDPGVKPVV-YYGSFNNSRLSEV 359 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~V~~~~~---------~s~~l~~~f~V~~~PtIvvfk~~~~~p~~-y~g~~~~~~L~~f 359 (689)
..|.++..+..| ......|.+... ....+.++++|+..|++++...++.+... -.|-++.++|.+=
T Consensus 168 ~apil~~fa~~y--gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~R 243 (256)
T TIGR02739 168 MAPVIQAFAKEY--GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLAYGFISQDELKER 243 (256)
T ss_pred HHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEeeccCCHHHHHHH
Confidence 456677777765 344444433221 01347889999999999999887654332 3688888888553
No 396
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=32.09 E-value=66 Score=29.36 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCC---CCC----cHHHHHHHHHHHHHcCCh
Q 005592 47 PYSSVEQVKEAYEKFSSKWNSGE---EIP----STADFLKIQYAYELLTDP 90 (689)
Q Consensus 47 ~~as~~eIk~ayr~l~~~~HPDk---~~~----~~~~f~~i~~AyevL~d~ 90 (689)
+..+..+++.|.|.+-++.|||- +|. +++-++.++.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 45677899999999999999993 221 334477777766666643
No 397
>PF11522 Pik1: Yeast phosphatidylinositol-4-OH kinase Pik1; InterPro: IPR021601 Pik1 is a regulator of membrane traffic and participates in the mating-pheromone signal-transduction cascade. The protein is localised to the nucleus and cytoplasm in the Golgi. Pik1 is thought to have an actin-independent role in membrane transport []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2JU0_B.
Probab=30.38 E-value=82 Score=24.65 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=19.6
Q ss_pred HHHHHHHHHhccccC----------CCchhHHHHHHHHHHHH
Q 005592 591 QRIRNIMGQCYDYLG----------DPRIGPALLLAALMSFG 622 (689)
Q Consensus 591 ~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~ 622 (689)
+|+++=++.+-+..+ .|.+.|+|+++|.|..+
T Consensus 8 RRv~NklQ~ilFn~~~~~~~~~~k~~ENv~PalVL~s~v~as 49 (51)
T PF11522_consen 8 RRVINKLQHILFNTSSSDISKQQKFRENVLPALVLCSAVLAS 49 (51)
T ss_dssp HHHHHHHT--SS-SS-----TT--SS-SHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccccccccccccccchHHHHHHHHHHh
Confidence 555555566555555 47799999999977654
No 398
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=30.37 E-value=1.2e+02 Score=28.87 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=46.5
Q ss_pred CCEEEEEEcCCCcCCcCchHHHHHHHHHHhccc-ceeeeecchhhhhhHHHhhCCCCcccccccccEEEEcCCCCCCCCC
Q 005592 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (689)
Q Consensus 154 ~~~LV~FYapwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~~~~~~~~L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~ 232 (689)
..-++.+|+|.||-|.. |-+ .|+..+ .|..+..++. ..+-+++|+ ++.-++-=|.++ +|
T Consensus 25 ~~~~~vyksPnCGCC~~----w~~---~mk~~Gf~Vk~~~~~d~---~alK~~~gI--p~e~~SCHT~VI--~G------ 84 (149)
T COG3019 25 ATEMVVYKSPNCGCCDE----WAQ---HMKANGFEVKVVETDDF---LALKRRLGI--PYEMQSCHTAVI--NG------ 84 (149)
T ss_pred eeeEEEEeCCCCccHHH----HHH---HHHhCCcEEEEeecCcH---HHHHHhcCC--ChhhccccEEEE--cC------
Confidence 34578899999999975 443 344443 6666665532 225566653 233334444443 22
Q ss_pred ccccccccCHHHHHHHHHHH
Q 005592 233 MTRFEGELSVDAVTDWFATA 252 (689)
Q Consensus 233 ~~~Y~G~rs~~~Iv~fv~k~ 252 (689)
.-.+|-.-+++|..++...
T Consensus 85 -y~vEGHVPa~aI~~ll~~~ 103 (149)
T COG3019 85 -YYVEGHVPAEAIARLLAEK 103 (149)
T ss_pred -EEEeccCCHHHHHHHHhCC
Confidence 1237888889999988754
No 399
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=27.42 E-value=3.5e+02 Score=22.20 Aligned_cols=37 Identities=32% Similarity=0.496 Sum_probs=24.7
Q ss_pred cHHHHhhcCCCCCCEEEEEeCCCCCceeecC-CCChHHHHHHHH
Q 005592 319 SSIWWNTFEVESAPAIVFLKDPGVKPVVYYG-SFNNSRLSEVME 361 (689)
Q Consensus 319 s~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g-~~~~~~L~~fI~ 361 (689)
.+++ .+|+|.+.|++++ ++ ...+.| .-+.+.|.+||+
T Consensus 39 ~~~~-~~ygv~~vPalvI---ng--~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 39 FEEI-EKYGVMSVPALVI---NG--KVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHHH-HHTT-SSSSEEEE---TT--EEEEESS--HHHHHHHHHH
T ss_pred HHHH-HHcCCCCCCEEEE---CC--EEEEEecCCCHHHHHHHhC
Confidence 3556 9999999999976 22 345788 456677887764
No 400
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=26.41 E-value=90 Score=30.20 Aligned_cols=43 Identities=21% Similarity=0.145 Sum_probs=32.6
Q ss_pred HHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHh
Q 005592 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~ 362 (689)
..+.+.|++...|+.+++..++.....+.|.++.+.|.+++.+
T Consensus 127 ~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~ 169 (173)
T TIGR00385 127 GKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLP 169 (173)
T ss_pred CchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHH
Confidence 4578889999999877776555544446788899999888765
No 401
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.40 E-value=1.5e+02 Score=28.81 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=41.1
Q ss_pred CCCCEEEEEEc-CCCcCCcCchHHHHHHHHHHhccc-ceeeeecchhhhhhHHHhhCC
Q 005592 152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGIA-NTGMVELGDIRLATHLAERKP 207 (689)
Q Consensus 152 ~~~~~LV~FYa-pwC~~Ck~l~p~w~~~A~~L~~~~-~vg~Vdc~~~~~~~~L~~k~~ 207 (689)
.++++++.||. .+++-|..=+-.|.+.-.+++... .|--|..+........+++++
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~ 86 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHG 86 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhC
Confidence 45578888884 688889888888888888887764 555566665556666888876
No 402
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=25.34 E-value=1.8e+02 Score=25.34 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=19.1
Q ss_pred cHHHHHHHHhcccCceEEEEEeccc-ccHHHHhhcCCCCCCEE
Q 005592 293 SPFVRQISRNYWAYASFAFVLWREE-ESSIWWNTFEVESAPAI 334 (689)
Q Consensus 293 ~~~~~~~A~~~~~~~~f~~V~~~~~-~s~~l~~~f~V~~~PtI 334 (689)
.+.+..++..+...+.+..+...+. +...+.+++++..+|++
T Consensus 40 ~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 40 LPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred hHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 3444445544443344443321111 11346667777656654
No 403
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=23.54 E-value=4.7e+02 Score=26.58 Aligned_cols=88 Identities=17% Similarity=0.263 Sum_probs=55.9
Q ss_pred HHHHHHhcCCCCCccccccchhhhccCccCccCCCCCCcccEEEEEecCCchhHHHHHHHHHHHHHhhcccccccccccc
Q 005592 356 LSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTD 435 (689)
Q Consensus 356 L~~fI~~~k~~~lp~lts~~~~~~~c~~~~~~~~~k~~~~~lCVIl~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~ 435 (689)
+.+-.+.++|..|-+++...+..++-.+. . ..|.+|-+..++-+...-+...|..+|.
T Consensus 81 ~r~~~~k~kfG~V~~ISg~dyv~EVT~As----~----gvwVvvhLy~~gvp~c~Ll~~~l~~la~-------------- 138 (240)
T KOG3170|consen 81 WRATAEKAKFGEVFPISGPDYVKEVTKAS----E----GVWVVVHLYKQGVPLCALLSHHLQSLAC-------------- 138 (240)
T ss_pred HHHHHHHhcccceeeccchHHHHHHHhcc----C----ccEEEEEeeccccHHHHHHHHHHHHHhh--------------
Confidence 44456778999999999998887665331 2 2355555555555555445555655544
Q ss_pred ccchHHHHHcCCCcEEEEEEeCcchHHHHHHhcccCCcccccCCcCCCCCCCeEEEE
Q 005592 436 QSLAPAAVAFRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIV 492 (689)
Q Consensus 436 ~~~~~~A~~~k~~~l~F~wvd~~~q~~f~~~f~~~~~~~~~c~~~~~~~~~P~lvI~ 492 (689)
.|.. ++|+=+-+ -+|-|.++..++|.|+|+
T Consensus 139 --------kfp~--iKFVki~a-----------------t~cIpNYPe~nlPTl~VY 168 (240)
T KOG3170|consen 139 --------KFPQ--IKFVKIPA-----------------TTCIPNYPESNLPTLLVY 168 (240)
T ss_pred --------cCCc--ceEEeccc-----------------ccccCCCcccCCCeEEEe
Confidence 5643 45554432 247777788889999997
No 404
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=23.42 E-value=1.8e+02 Score=28.20 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=27.7
Q ss_pred ceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCC
Q 005592 307 ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (689)
Q Consensus 307 ~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~ 342 (689)
..-.++...+...+++..+|+|...|++++.++.+.
T Consensus 92 ~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 92 GDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGT 127 (157)
T ss_pred CCeEEecCCCHHHHHHHHhcccCcCceeEEecCCCC
Confidence 344556555655588999999999999999988663
No 405
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=23.37 E-value=3.4e+02 Score=28.40 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=41.1
Q ss_pred CcHHHHHHHHhcccCceEEEEEeccc---------ccHHHHhhcCCCCCCEEEEEeCCCCCcee-ecCCCChHHHHHH
Q 005592 292 ASPFVRQISRNYWAYASFAFVLWREE---------ESSIWWNTFEVESAPAIVFLKDPGVKPVV-YYGSFNNSRLSEV 359 (689)
Q Consensus 292 ~~~~~~~~A~~~~~~~~f~~V~~~~~---------~s~~l~~~f~V~~~PtIvvfk~~~~~p~~-y~g~~~~~~L~~f 359 (689)
..|.++..+..| .....-|.+... ......++++|...|++++...++.+... -.|-++.++|.+=
T Consensus 161 ~aPil~~fa~~y--g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~R 236 (248)
T PRK13703 161 LAQVINDFRDTY--GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKR 236 (248)
T ss_pred HHHHHHHHHHHh--CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHH
Confidence 467777777765 233333332111 01235679999999999999887654332 3688888888553
No 406
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=23.34 E-value=93 Score=29.07 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=26.0
Q ss_pred HHhhCCCCcccccccccEEEEcCCCCCCCCCccccccccCHHHHHHHHHH
Q 005592 202 LAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (689)
Q Consensus 202 L~~k~~~~~~f~V~gyPTL~~f~~g~~~~~~~~~Y~G~rs~~~Iv~fv~k 251 (689)
.+++.+ |.+.||+++ +|. .+.|..+.++|.+.+.+
T Consensus 128 ~~~~~~------i~~tPt~~i--nG~-------~~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 128 LARQLG------ITGTPTFFI--NGK-------YVVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHT-------SSSSEEEE--TTC-------EEETTTSHHHHHHHHHH
T ss_pred HHHHcC------CccccEEEE--CCE-------EeCCCCCHHHHHHHHcC
Confidence 556667 889999988 553 35888999999888753
No 407
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=23.18 E-value=5.1e+02 Score=22.69 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=35.4
Q ss_pred cEEEEEEeCCCCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCC-CCCceeecCCCC
Q 005592 279 KVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFN 352 (689)
Q Consensus 279 k~~Vl~f~~~~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~-~~~p~~y~g~~~ 352 (689)
+..+.+|.+......-.++.+|..+++...|... .++. .....-. .+.+++|++. ......|.|.++
T Consensus 18 r~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~-~G~~-----~~~~~~~-~~~~i~frp~~~~~~~~y~G~~t 85 (91)
T cd03070 18 RNIIGYFESKDSDEYDNFRKVANILRDDCSFLVG-FGDV-----TKPERPP-GDNIIYFPPGHNAPDMVYLGSLT 85 (91)
T ss_pred ceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEE-eccc-----cccccCC-CCCeEEECCCCCCCceEEccCCC
Confidence 3445566554322334557788888888776443 2221 1111122 3445666664 333467888874
No 408
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=23.06 E-value=2.1e+02 Score=28.77 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=41.3
Q ss_pred CcEEEEEEeCC---CCCCcHHHHHHHHhcccCceEEEEEecccccHHHHhhcCCCCCCEEEEEeCCCC
Q 005592 278 HKVKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (689)
Q Consensus 278 ~k~~Vl~f~~~---~~~~~~~~~~~A~~~~~~~~f~~V~~~~~~s~~l~~~f~V~~~PtIvvfk~~~~ 342 (689)
.++++-|+-+. |+....-+..+|..+. ...|..|+... .+-++.+++|+-.|+|++|+++..
T Consensus 85 ~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~--~PFlv~kL~IkVLP~v~l~k~g~~ 149 (211)
T KOG1672|consen 85 EKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEK--APFLVTKLNIKVLPTVALFKNGKT 149 (211)
T ss_pred ceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEeccc--CceeeeeeeeeEeeeEEEEEcCEE
Confidence 34545455432 2233444556777654 45788887544 477999999999999999998643
No 409
>PHA02125 thioredoxin-like protein
Probab=22.16 E-value=1.9e+02 Score=23.70 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=15.4
Q ss_pred cHHHHhhcCCCCCCEEE
Q 005592 319 SSIWWNTFEVESAPAIV 335 (689)
Q Consensus 319 s~~l~~~f~V~~~PtIv 335 (689)
..++.++|+|...||++
T Consensus 35 ~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 35 GVELTAKHHIRSLPTLV 51 (75)
T ss_pred CHHHHHHcCCceeCeEE
Confidence 47899999999999987
No 410
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=21.95 E-value=56 Score=32.05 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=14.3
Q ss_pred HHHhhCCCCcccccccccEEEEcCC
Q 005592 201 HLAERKPIGQIFFRRGLPSLVAFPP 225 (689)
Q Consensus 201 ~L~~k~~~~~~f~V~gyPTL~~f~~ 225 (689)
.++++.+ |+++||+++|..
T Consensus 138 ~la~~m~------I~~~Ptlvi~~~ 156 (176)
T PF13743_consen 138 QLAREMG------ITGFPTLVIFNE 156 (176)
T ss_dssp HHHHHTT-------SSSSEEEEE--
T ss_pred HHHHHcC------CCCCCEEEEEec
Confidence 3788888 889999999983
No 411
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=21.35 E-value=1.5e+02 Score=29.08 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=32.1
Q ss_pred HHHHhhcCCCCCCEEEEEeCCCCCceeecCCCChHHHHHHHHh
Q 005592 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (689)
Q Consensus 320 ~~l~~~f~V~~~PtIvvfk~~~~~p~~y~g~~~~~~L~~fI~~ 362 (689)
..+...|++...|+.+++...+.....+.|.++.+.|.++|..
T Consensus 132 ~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 132 GMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred ccHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 3466789999999888886656544456888898888887754
No 412
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=21.26 E-value=1.6e+02 Score=27.63 Aligned_cols=43 Identities=28% Similarity=0.471 Sum_probs=29.3
Q ss_pred cHHHHhhcCCCCCCEEEEEeCCC-------CC---ceeecCCCChHHHHHHHH
Q 005592 319 SSIWWNTFEVESAPAIVFLKDPG-------VK---PVVYYGSFNNSRLSEVME 361 (689)
Q Consensus 319 s~~l~~~f~V~~~PtIvvfk~~~-------~~---p~~y~g~~~~~~L~~fI~ 361 (689)
.+.+.++|+|+..|++|+.+++. .. .....|..+.+.-.+.|.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 47799999999999999998763 00 112367776655444444
No 413
>PF15179 Myc_target_1: Myc target protein 1
Probab=21.24 E-value=1.1e+02 Score=30.30 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhccccCC
Q 005592 613 LLLAALMSFGTIWLMRGQQRA 633 (689)
Q Consensus 613 l~~~~~~~~~~~~~~~~~~~~ 633 (689)
||+||+|=+...|+.|++.-+
T Consensus 33 LviG~li~~LltwlSRRRASa 53 (197)
T PF15179_consen 33 LVIGALIWALLTWLSRRRASA 53 (197)
T ss_pred HHHHHHHHHHHHHHHhccccc
Confidence 789999999999999998634
No 414
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=21.10 E-value=2e+02 Score=25.23 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=20.5
Q ss_pred HcCCCcEEEEEEeCcc------hHHHHHHhcccCCc
Q 005592 444 AFRNKRLTFAWLDGEA------QDRYCSFYLFSETS 473 (689)
Q Consensus 444 ~~k~~~l~F~wvd~~~------q~~f~~~f~~~~~~ 473 (689)
+|.+.+|.|.|||... .++|++.+...+..
T Consensus 32 Kyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~f 67 (93)
T PF07315_consen 32 KYPDQPFEFTYIDIENPPENDHDQQFAERILEDELF 67 (93)
T ss_dssp H-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-
T ss_pred cCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccc
Confidence 6888999999999843 34688877666654
No 415
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=20.97 E-value=5e+02 Score=23.49 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=19.2
Q ss_pred cHHHHhhcCCCCCCEEEEEeC
Q 005592 319 SSIWWNTFEVESAPAIVFLKD 339 (689)
Q Consensus 319 s~~l~~~f~V~~~PtIvvfk~ 339 (689)
.+.+.++|+|+..|++++-++
T Consensus 60 dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEEEcC
Confidence 477999999999999999987
No 416
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=20.66 E-value=2.9e+02 Score=29.95 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=42.9
Q ss_pred hcCCCCccCcccccCcCC-CCCHHHHHHHHHHHHHhc-------CCCCCC------CcHHHHHHHHHHHHHcCCh
Q 005592 30 VLPRSFPPSHYDALGIKP-YSSVEQVKEAYEKFSSKW-------NSGEEI------PSTADFLKIQYAYELLTDP 90 (689)
Q Consensus 30 ~~~~~~~~d~Y~vLgv~~-~as~~eIk~ayr~l~~~~-------HPDk~~------~~~~~f~~i~~AyevL~d~ 90 (689)
-........+++-||++. ..+.+|+.+-.+.++.+. ++|.+. ...+.+.++.+||+.|.+.
T Consensus 75 WGlNY~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 75 WGLNYYRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred hhhhcCCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 334445678889999987 789999887777666543 344321 2366799999999988754
Done!