Query 005592
Match_columns 689
No_of_seqs 359 out of 3365
Neff 7.0
Searched_HMMs 29240
Date Wed Mar 27 00:52:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m3/005592.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H3_7-7//hhsearch_pdb/005592hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3apo_A DNAJ homolog subfamily 1.0 1 1 394.7 29.9 309 35-372 19-341 (780)
2 3us3_A Calsequestrin-1; calciu 1.0 1 1 294.3 27.4 320 137-549 14-348 (367)
3 2r2j_A Thioredoxin domain-cont 1.0 1 1 285.5 22.0 335 134-568 3-346 (382)
4 1sji_A Calsequestrin 2, calseq 1.0 1 1 282.7 28.4 329 124-551 3-347 (350)
5 3f8u_A Protein disulfide-isome 1.0 1 1 282.2 28.8 333 136-568 1-351 (481)
6 2b5e_A Protein disulfide-isome 1.0 1 1 278.2 22.1 336 135-566 13-355 (504)
7 3apq_A DNAJ homolog subfamily 1.0 1 1 275.5 9.2 197 37-253 2-201 (210)
8 3apo_A DNAJ homolog subfamily 1.0 1 1 223.3 27.9 318 137-549 441-767 (780)
9 3ed3_A Protein disulfide-isome 1.0 1 1 223.3 16.4 229 135-378 16-282 (298)
10 3idv_A Protein disulfide-isome 1.0 1 1 188.0 17.6 209 136-366 15-238 (241)
No 1
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=1.00 E-value=1 Score=394.73 Aligned_cols=309 Identities=20% Similarity=0.349 Sum_probs=225.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 8668431018678999999999999999851999999---8079999999999771992466432002870133455431
Q 005592 35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKV 111 (689)
Q Consensus 35 ~~~d~Y~vLgv~~~a~~~~ik~ayr~l~~~~HPD~~~---~~~e~f~~i~~Aye~L~d~~~r~~yd~~g~~~~~~~~~~~ 111 (689)
...|||+||||+++|+.++||+|||+|+++||||+++ .+.++|.+|++||++|+||.+|+.||.+|..+.....
T Consensus 19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~~--- 95 (780)
T 3apo_A 19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQ--- 95 (780)
T ss_dssp ----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC------------
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCC---
T ss_conf 99998998098999999999999999999878698999757999999999999997176888988764112334677---
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 01247543233568987778987520699257897663479997799997399967768439999999997223421000
Q 005592 112 REQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMV 191 (689)
Q Consensus 112 ~~~~~~~~f~~~~f~~~~~~~~~~~~V~~Lt~~nF~~~I~~~~~~LV~FYapwCghCk~laP~w~evA~~L~g~~~va~V 191 (689)
++++..++|.+..||+|.+. +.|..||.++|++.+.++++|+|+||+|||+||+++.|+|+++|+.+.+.+.+++|
T Consensus 96 ~~~~~~~~~~~~~fg~~~~~----~~v~~l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~v 171 (780)
T 3apo_A 96 GGQYESWSYYRYDFGIYDDD----PEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAV 171 (780)
T ss_dssp --------CCSSSSSTTTTC----TTEEECCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEE
T ss_pred CCCCCCCCCCCHHHCCCCCC----CCEEEECHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 77753422001011146788----65165036767766337885899985798741667669999999981486389999
Q ss_pred ECCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCC---HHH
Q ss_conf 12202455587762898733420230189974999979998221246658889999999975017941001430---133
Q 005592 192 ELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKE---SMG 268 (689)
Q Consensus 192 Dc~e~~~~~~La~k~~i~~~F~V~gyPTI~lf~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~---~~~ 268 (689)
||++++. +|++++ |+++|||++|++|.. ...|.|.++.+.|++|+.+.+ .+....+++. +.+
T Consensus 172 d~~~~~~---l~~~~~------v~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~l~~~~--~~~~~~i~~~~~~~~l 236 (780)
T 3apo_A 172 NCGDDRM---LCRMKG------VNSYPSLFIFRSGMA----AVKYNGDRSKESLVAFAMQHV--RSTVTELSTGNFVNAI 236 (780)
T ss_dssp ETTTCSS---CC--------------CEEEEECTTSC----CEECCSCSCHHHHHHHHHTTS--CCCEEECCHHHHHHHH
T ss_pred ECCCCHH---HHHHCC------CCEEEEEEEEECCCE----EEEECCCCCHHHHHHHHHHHC--HHHHEECCCHHHHHHH
T ss_conf 6887499---999749------964326999808967----367558789999999999854--1342002404568898
Q ss_pred HHHHHHCCCCCEEEEEEECCCC-CCC-HHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHCCCCCCCEEEEEECC------
Q ss_conf 5454213999479999807999-970-99999998404575189998113421778844699999989998099------
Q 005592 269 KNFLAKTGPHKVKVIFFSKTGE-RAS-PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP------ 340 (689)
Q Consensus 269 ~~Fl~~~~~~kv~Vl~F~~~~~-~~~-~~~r~~A~~~~~~~~Fg~V~~~~~~s~~l~~~f~V~~~PtIvifk~~------ 340 (689)
+.|+.. +.+.|++|.+... ++. ..++.++..|++.+.|+++.-.. ...++++|+++..| +++|++.
T Consensus 237 ~~~~~~---~~~~vi~f~~~~~~~~~~~~~~~l~~~f~~~~~f~~v~c~~--~~~l~~~~gi~~~p-~~~f~~~~~~~~~ 310 (780)
T 3apo_A 237 ETAFAA---GVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDA--QDSLCKSLDTTAST-TAYFPPGATLNDR 310 (780)
T ss_dssp HHHHHH---TCEEEEEEECTTSCCCCHHHHHHHHHHTTTTEEEEEEETTT--SHHHHTCC-----C-EEEECTTCCSSTT
T ss_pred HHHHCC---CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCC--CHHHHHHHCCCCCC-EEEECCCCCCCCC
T ss_conf 764224---88889999069634358899999999865465289997579--88999972878774-2651365666777
Q ss_pred CCCCEEECCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99803325999957899999842787774346
Q 005592 341 GVKPVVYYGSFNNSRLSEVMEQNKLQELPQLR 372 (689)
Q Consensus 341 ~~~p~~y~g~~~~~~L~~fI~~~k~~~vp~lt 372 (689)
+..++.|.|.++...|..||.. .+|.+..++
T Consensus 311 ~~~~~~y~g~~~~~~i~~~i~~-~~p~v~~it 341 (780)
T 3apo_A 311 EKSSVLFLNSLDAKEIYMEIIH-NLPDFELLS 341 (780)
T ss_dssp TGGGSEEECCCCHHHHHHHHHH-HSCCCCEEC
T ss_pred CCCCEECCCCCCHHHHHHHHHH-HCCCCCCCC
T ss_conf 6532111466568999999997-689800089
No 2
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=1.00 E-value=1 Score=294.27 Aligned_cols=320 Identities=13% Similarity=0.210 Sum_probs=240.6
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEEECCCCCCC---CCCH---HHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHCCCC
Q ss_conf 06992578976634799977999973999677---6843---9999999997223-421000122024555877628987
Q 005592 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLC---GQFS---GAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIG 209 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I~~~~~~LV~FYapwCghC---k~la---P~w~evA~~L~g~-~~va~VDc~e~~~~~~La~k~~i~ 209 (689)
.|.+||.+||++.|.+++++||+||||||+|| ++++ |+|+++|..+++. +.+++|||++++ .||++++
T Consensus 14 ~v~~lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~---~l~~~~~-- 88 (367)
T 3us3_A 14 RVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDA---AVAKKLG-- 88 (367)
T ss_dssp CCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTH---HHHHHHT--
T ss_pred CCEECCHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCH---HHHHHCC--
T ss_conf 60889878899998419869999989986068885653001279999999720479469997076549---9999749--
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf 33420230189974999979998221246658889999999975017941001430133545421399947999980799
Q 005592 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTG 289 (689)
Q Consensus 210 ~~F~V~gyPTI~lf~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~~~~kv~Vl~F~~~~ 289 (689)
|++||||++|++|. ...|.|.++.+.|++|+.+++ .|....+++.+.++.|+... ...++|.||.+.+
T Consensus 89 ----V~~~PTl~~f~~G~-----~~~y~G~~~~~~i~~~i~~~~--~~~v~~i~~~~~~~~~~~~~-~~~~vv~ff~~~~ 156 (367)
T 3us3_A 89 ----LTEEDSIYVFKEDE-----VIEYDGEFSADTLVEFLLDVL--EDPVELIEGERELQAFENIE-DEIKLIGYFKNKD 156 (367)
T ss_dssp ----CCSTTEEEEEETTE-----EEECCSCCSHHHHHHHHHHHH--SCSEEECCSHHHHHHHHHCC-SSCEEEEECSCTT
T ss_pred ----CCCCCEEEEEECCC-----EEEECCCCCHHHHHHHHHHHC--CCCCEECCCHHHHHHHHCCC-CCCEEEEEECCCC
T ss_conf ----98686699998995-----777579778999999999853--88747727999999986367-8738999989988
Q ss_pred CCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEECCC-CCHHHHHHHHHHCCCCCC
Q ss_conf 9970999999984045751899981134217788446999999899980999980332599-995789999984278777
Q 005592 290 ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVMEQNKLQEL 368 (689)
Q Consensus 290 ~~~~~~~r~~A~~~~~~~~Fg~V~~~~~~s~~l~~~f~V~~~PtIvifk~~~~~p~~y~g~-~~~~~L~~fI~~~k~~~v 368 (689)
......+..+|..+++.+.|+.+. ...++++|+++ .|+|++|++++..++.|.|. ++.+.|.+||..+.+|++
T Consensus 157 ~~~~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~v~-~p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v 230 (367)
T 3us3_A 157 SEHYKAFKEAAEEFHPYIPFFATF-----DSKVAKKLTLK-LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTL 230 (367)
T ss_dssp CHHHHHHHHHHHHHTTTSCEEEEC-----CHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTCSCSE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC-----CHHHHHHCCCC-CCEEEEECCCCCCCEECCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 668999999999605883799988-----89999873999-981899838998770158998999999999997281022
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 434664322101476686677888752089999647-9656799999999999963036665533455661479987189
Q 005592 369 PQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRN 447 (689)
Q Consensus 369 p~lts~~~~~~~C~~~~~~~~~k~~~~~lCVIl~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~k~ 447 (689)
++++..+..+..+.. .. ..+++++.. ...+..+..+.++.+|+ .+++
T Consensus 231 ~elt~~~~~~~~~~~-----~~-----~~~~~~f~~~~~~~~~~~~~~l~~vA~----------------------~~~~ 278 (367)
T 3us3_A 231 RKLKPESMYETWEDD-----MD-----GIHIVAFAEEADPDGYEFLEILKSVAQ----------------------DNTD 278 (367)
T ss_dssp EECCGGGHHHHHHSC-----BT-----TEEEEEECCTTSHHHHHHHHHHHHHHH----------------------HTTT
T ss_pred EECCHHHHHHHHHHC-----CC-----CCEEEEEECCCCHHHHHHHHHHHHHHH----------------------HCCC
T ss_conf 665864699997513-----68-----827999975888649999999999999----------------------7388
Q ss_pred C-CEEEEEEECCCHHHHHH----HHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC-CCEEECCCCCCCCCCCCCCC
Q ss_conf 8-18999995722089989----761467742324776789999929999963288754-42140356764343333467
Q 005592 448 K-RLTFAWLDGEAQDRYCS----FYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTED-EAKIERKPRNIWDAMQEQEV 521 (689)
Q Consensus 448 ~-~v~F~wvd~~~q~~f~~----~f~~~~~~~~~c~~~~~~~~~P~ivI~~~rrn~~~~-~~k~~~~~w~~l~~~~~~~~ 521 (689)
+ ++.|+|+|+..++..++ .|-... .+|.++|+ |.+.. ..+|. + ++.
T Consensus 279 ~~ki~F~~id~~~~~~~l~~~~~~fgl~~-------------~~P~~~i~----~~~~~~~~~y~------~---~~~-- 330 (367)
T 3us3_A 279 NPDLSIIWIDPDDFPLLVPYWEKTFDIDL-------------SAPQIGVV----NVTDADSVWME------M---DDE-- 330 (367)
T ss_dssp CTTCCEEEECGGGCTTTHHHHHHHHTCCT-------------TSCEEEEE----ETTTCCEEECC------C---CTT--
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCC-------------CCCEEEEE----ECCCCCCEEEC------C---CCC--
T ss_conf 98369999898643157787798618788-------------89828999----63556623436------8---753--
Q ss_pred CCCCCCHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 8422001104899866799999999950
Q 005592 522 DPASQLVVRYNGSDEIPQIAKWVSEIIQ 549 (689)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 549 (689)
.+.-+.+.|..||.+++.
T Consensus 331 ----------~~~~t~~~i~~F~~~~~~ 348 (367)
T 3us3_A 331 ----------EDLPSAEELEDWLEDVLE 348 (367)
T ss_dssp ----------SCCCCHHHHHHHHHHHHH
T ss_pred ----------CCCCCHHHHHHHHHHHHC
T ss_conf ----------456998999999999975
No 3
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=285.55 Aligned_cols=335 Identities=11% Similarity=0.140 Sum_probs=240.5
Q ss_pred CCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH------CCCCEEEEECCHHHHHHHHHHHCC
Q ss_conf 75206992578976634799977999973999677684399999999972------234210001220245558776289
Q 005592 134 SVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE------GIANTGMVELGDIRLATHLAERKP 207 (689)
Q Consensus 134 ~~~~V~~Lt~~nF~~~I~~~~~~LV~FYapwCghCk~laP~w~evA~~L~------g~~~va~VDc~e~~~~~~La~k~~ 207 (689)
..+.|..||.++|+..+.++++|+|+||||||+||++++|+|+++|+.++ +.+.+++|||+++. .+|++++
T Consensus 3 ~~~~v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~---~l~~~~~ 79 (382)
T 2r2j_A 3 LGSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHS---DIAQRYR 79 (382)
T ss_dssp -----CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCH---HHHHHTT
T ss_pred CCCCEEECCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCH---HHHHHCC
T ss_conf 9886288978889999816983999998999878998779999999998863688883699999797668---8998569
Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCCEEEEEEEC
Q ss_conf 87334202301899749999799982212466588899999999750179410014301335454213999479999807
Q 005592 208 IGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSK 287 (689)
Q Consensus 208 i~~~F~V~gyPTI~lf~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~~~~kv~Vl~F~~ 287 (689)
|++|||+++|++|.. ....|.|.++.+.|++|+.+.+ .|....+++.+.++. +.. ...++|.||.+
T Consensus 80 ------v~~~Pt~~~f~~G~~---~~~~~~G~~~~~~l~~~i~~~~--~~~v~~l~~~~~l~~-l~~--~~~~~v~ff~~ 145 (382)
T 2r2j_A 80 ------ISKYPTLKLFRNGMM---MKREYRGQRSVKALADYIRQQK--SDPIQEIRDLAEITT-LDR--SKRNIIGYFEQ 145 (382)
T ss_dssp ------CCEESEEEEEETTEE---EEEECCSCCSHHHHHHHHHHHH--SCCCEEC---------------CCEEEEEESC
T ss_pred ------CCCCCEEEEEECCCE---EEEEECCCCHHHHHHHHHHHHC--CCCCEECCCHHHHHH-HCC--CCCEEEEEECC
T ss_conf ------986887999969968---6653047404999999999756--677510598999997-367--88889999788
Q ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHCCCCCCCEEEEEECC-CCCCEEECCCC-CHHHHHHHHHHCCC
Q ss_conf 99997099999998404575189998113421778844699999989998099-99803325999-95789999984278
Q 005592 288 TGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSF-NNSRLSEVMEQNKL 365 (689)
Q Consensus 288 ~~~~~~~~~r~~A~~~~~~~~Fg~V~~~~~~s~~l~~~f~V~~~PtIvifk~~-~~~p~~y~g~~-~~~~L~~fI~~~k~ 365 (689)
........+..+|..+++...|+.+.. .+.+.++++..| +++++.. ...+..|.|.+ +...|.+||..+.+
T Consensus 146 ~~~~~~~~f~~~A~~~~~~~~F~~~~~------~~~~~~~v~~~p-i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~ 218 (382)
T 2r2j_A 146 KDSDNYRVFERVANILHDDCAFLSAFG------DVSKPERYSGDN-IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCV 218 (382)
T ss_dssp SSSHHHHHHHHHHHHHTTTCEEEEEES------CC--------CE-EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEH------HHHHHHCCCCCC-EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 778458999999998520362799715------667863788886-6987787777672367887999999999996665
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCC-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 77743466432210147668667788875208999964796-56799999999999963036665533455661479987
Q 005592 366 QELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLS-PELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVA 444 (689)
Q Consensus 366 ~~vp~lts~~~~~~~C~~~~~~~~~k~~~~~lCVIl~~~~~-~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~ 444 (689)
|.+++++..+..+..|.. + .+|++++...+ .....+++.+.++ |..
T Consensus 219 p~v~elt~~~~~~~~~~~-------~----~~~v~f~~~~~~~~~~~~~~~~~~~----------------------~~~ 265 (382)
T 2r2j_A 219 PLVREITFENGEELTEEG-------L----PFLILFHMKEDTESLEIFQNEVARQ----------------------LIS 265 (382)
T ss_dssp CSSEECCHHHHHHHHTTC-------C----CEEEEEECTTCCHHHHHHHHHHHHH----------------------TGG
T ss_pred CCEEECCHHHHHHHHCCC-------C----CEEEEEECCCCHHHHHHHHHHHHHH----------------------HHH
T ss_conf 862745754699984589-------8----4899993487457899999999999----------------------997
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 18981899999572208998976146774232477678999992999996328875442140356764343333467842
Q 005592 445 FRNKRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPA 524 (689)
Q Consensus 445 ~k~~~v~F~wvd~~~q~~f~~~f~~~~~~~~~c~~~~~~~~~P~ivI~~~rrn~~~~~~k~~~~~w~~l~~~~~~~~~~~ 524 (689)
+++ .+.|+|+|++.+..++..|..... ++|.|+|+ |..+ .++|.. + .+
T Consensus 266 ~~~-~i~f~~id~~~~~~~~~~~gl~~~------------~~P~i~i~----~~~~-~y~~~~-----~---~~------ 313 (382)
T 2r2j_A 266 EKG-TINFLHADCDKFRHPLLHIQKTPA------------DCPVIAID----SFRH-MYVFGD-----F---KD------ 313 (382)
T ss_dssp GTT-TSEEEEEETTTTHHHHHHTTCCGG------------GCSEEEEE----CSSC-EEECCC-----S---GG------
T ss_pred HCC-EEEEEEECHHHHHHHHHHCCCCCC------------CCCEEEEE----CCHH-CCCCCC-----C---CC------
T ss_conf 489-049999845885899997699846------------79889998----3121-478874-----2---23------
Q ss_pred CCCHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20011048998667999999999507998877864577998888
Q 005592 525 SQLVVRYNGSDEIPQIAKWVSEIIQDGDSKDLPFYRAKTPELVP 568 (689)
Q Consensus 525 ~~~~~~~~~~~~~~~i~~~i~~~~~~g~~~~~~~~~~~~p~l~~ 568 (689)
..+.+.|..||.+++. +.....++++++|+-++
T Consensus 314 ---------~~~~~~i~~F~~d~~~--Gkl~p~~kse~~P~~~~ 346 (382)
T 2r2j_A 314 ---------VLIPGKLKQFVFDLHS--GKLHREFHHGPDPTDTA 346 (382)
T ss_dssp ---------GGSTTHHHHHHHHHHH--TTTSSCC----------
T ss_pred ---------CCCHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCC
T ss_conf ---------3578899999999977--98662136799998787
No 4
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=1.00 E-value=1 Score=282.69 Aligned_cols=329 Identities=14% Similarity=0.196 Sum_probs=246.0
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHH-------HHHHHHHHHCC-CCEEEEECCH
Q ss_conf 689877789875206992578976634799977999973999677684399-------99999997223-4210001220
Q 005592 124 DLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGA-------WKTIAALLEGI-ANTGMVELGD 195 (689)
Q Consensus 124 ~f~~~~~~~~~~~~V~~Lt~~nF~~~I~~~~~~LV~FYapwCghCk~laP~-------w~evA~~L~g~-~~va~VDc~e 195 (689)
++|.+.+. +.|..||.+||+..+.++++|+|.||||||+ |++++|+ |+++|+.+++. +.+++|||++
T Consensus 3 ~~p~~~~~----~~v~~l~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~ 77 (350)
T 1sji_A 3 NFPTYDGK----DRVVSLTEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK 77 (350)
T ss_dssp SSCCCCCC----CCCEEECHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT
T ss_pred CCCCCCCC----CCCEECCHHHHHHHHHHCCEEEEEEECCCCC-CHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 99987899----8508998889999996098499999899986-066470000346899999998753690799985777
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHH-H
Q ss_conf 245558776289873342023018997499997999822124665888999999997501794100143013354542-1
Q 005592 196 IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLA-K 274 (689)
Q Consensus 196 ~~~~~~La~k~~i~~~F~V~gyPTI~lf~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~-~ 274 (689)
++ .+|++++ |++|||+++|++|. ...|.|.++.+.|++|+.+.+ .|....+++.+.++.|+. .
T Consensus 78 ~~---~l~~~~~------v~~~Pt~~~~~~g~-----~~~~~G~~~~~~l~~~i~~~~--~~~~~~l~~~~~~~~~~~~~ 141 (350)
T 1sji_A 78 EA---KLAKKLG------FDEEGSLYVLKGDR-----TIEFDGEFAADVLVEFLLDLI--EDPVEIINSKLEVQAFERIE 141 (350)
T ss_dssp TH---HHHHHHT------CCSTTEEEEEETTE-----EEEECSCCCHHHHHHHHHTTS--SCSEEECCSHHHHHHHHHCC
T ss_pred CH---HHHHHCC------CCCCCEEEEEECCC-----EEEECCCCCHHHHHHHHHHHC--CCCCEECCCHHHHHHHHCCC
T ss_conf 88---8998669------87365699998992-----788569889999999999714--77545526667899986357
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEECCC-CCH
Q ss_conf 3999479999807999970999999984045751899981134217788446999999899980999980332599-995
Q 005592 275 TGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNN 353 (689)
Q Consensus 275 ~~~~kv~Vl~F~~~~~~~~~~~r~~A~~~~~~~~Fg~V~~~~~~s~~l~~~f~V~~~PtIvifk~~~~~p~~y~g~-~~~ 353 (689)
. ..+.|.||.+.+......+..+|..+++.+.|+.+. ...++++|+++ .|+|++|++.+..+..|.|. ++.
T Consensus 142 ~--~~~vv~ff~~~~~~~~~~~~~~A~~~~~~~~f~~~~-----~~~~~~~~~v~-~p~i~~~~~~~~~~~~y~g~~~~~ 213 (350)
T 1sji_A 142 D--QIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFATF-----DKGVAKKLSLK-MNEVDFYEPFMDEPIAIPDKPYTE 213 (350)
T ss_dssp S--SCEEEEECSCTTSHHHHHHHHHHHHTTTTSEEEEEC-----CHHHHHHHTCC-TTCEEEECTTCSSCEECSSSSCCH
T ss_pred C--CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC-----CHHHHHHCCCC-CCCEEEEECCCCCCEECCCCCCCH
T ss_conf 8--748999989988278999999998605684799988-----89999872999-980899817998865437999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 7899999842787774346643221014766866778887520899996479-656799999999999963036665533
Q 005592 354 SRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRL-SPELNKMRETIRRVQETLLSDDESNAA 432 (689)
Q Consensus 354 ~~L~~fI~~~k~~~vp~lts~~~~~~~C~~~~~~~~~k~~~~~lCVIl~~~~-~~~~~~~~~~lr~~a~~~~~~~~~~~~ 432 (689)
+.|.+||..+.+|.+++++..+..+ +|.. ..+ .+|++++... +.+....++.++++|+
T Consensus 214 ~~l~~fi~~~~~p~v~elt~~~~~~-~~~~-----~~~----~~~~l~f~~~~~~~~~~~~~~~~~vA~----------- 272 (350)
T 1sji_A 214 EELVEFVKEHQRPTLRRLRPEDMFE-TWED-----DLN----GIHIVAFAERSDPDGYEFLEILKQVAR----------- 272 (350)
T ss_dssp HHHHHHHHHHCCCSEEECCTTTHHH-HHHS-----CSS----SEEEEEECCTTSHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHCCCCCHHHCCHHHHHH-HHCC-----CCC----CCEEEEEECCCCCCHHHHHHHHHHHHH-----------
T ss_conf 9999999975811022247300898-8447-----777----717999973789447899999999999-----------
Q ss_pred CCCCCCHHHHHHCC-CCCEEEEEEECCCHHHHH----HHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEC
Q ss_conf 45566147998718-981899999572208998----9761467742324776789999929999963288754421403
Q 005592 433 DTDQSLAPAAVAFR-NKRLTFAWLDGEAQDRYC----SFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIER 507 (689)
Q Consensus 433 ~~~~~~~~~A~~~k-~~~v~F~wvd~~~q~~f~----~~f~~~~~~~~~c~~~~~~~~~P~ivI~~~rrn~~~~~~k~~~ 507 (689)
.++ +.++.|+|+|++.++.++ +.|-... +.|.++|+ |++.. .+|..
T Consensus 273 -----------~~~~~~~~~f~~id~~~~~~~~~~~~~~~gi~~-------------~~P~~~i~----~~~~~-~~~~~ 323 (350)
T 1sji_A 273 -----------DNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDL-------------FKPQIGVV----NVTDA-DSVWM 323 (350)
T ss_dssp -----------HGGGCSSCCEEEECGGGCHHHHHHHHHHCCSCT-------------TSCEEEEE----ESSSS-CEEES
T ss_pred -----------HHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCC-------------CCCCEEEE----ECCCC-CCCCC
T ss_conf -----------707898569999883465789888886448786-------------68838999----54546-63355
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 56764343333467842200110489986679999999995079
Q 005592 508 KPRNIWDAMQEQEVDPASQLVVRYNGSDEIPQIAKWVSEIIQDG 551 (689)
Q Consensus 508 ~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~g 551 (689)
- + ++ .++..+.+.|..||++++. |
T Consensus 324 --~--~---~~------------~~~~~~~~~i~~F~~d~~~-G 347 (350)
T 1sji_A 324 --E--I---PD------------DDDLPTAEELEDWIEDVLS-G 347 (350)
T ss_dssp --C--S---SC------------CSCCCCHHHHHHHHHHHHT-S
T ss_pred --C--C---CC------------CCCCCCHHHHHHHHHHHHC-C
T ss_conf --7--8---84------------1356898999999999964-8
No 5
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=1.00 E-value=1 Score=282.17 Aligned_cols=333 Identities=15% Similarity=0.192 Sum_probs=247.0
Q ss_pred CEEEEECCCCCCCCCCCC---CCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf 206992578976634799---97799997399967768439999999997223421000122024555877628987334
Q 005592 136 HAFNVVTSEDFPSIFHDS---KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (689)
Q Consensus 136 ~~V~~Lt~~nF~~~I~~~---~~~LV~FYapwCghCk~laP~w~evA~~L~g~~~va~VDc~e~~~~~~La~k~~i~~~F 212 (689)
+.|..||.++|++.+.++ ++|+|+||+|||+||+++.|+|+++|+.+++.+.+++|||++++ .+|++++
T Consensus 1 s~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~---~l~~~~~----- 72 (481)
T 3f8u_A 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANT---NTCNKYG----- 72 (481)
T ss_dssp CCCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCH---HHHHHTT-----
T ss_pred CCEEEECHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH---HHHHHCC-----
T ss_conf 96099058889999972789986999998999978897689999999982186289999899898---8998649-----
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCCEEEEEEECCCCCC
Q ss_conf 20230189974999979998221246658889999999975017941001430133545421399947999980799997
Q 005592 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERA 292 (689)
Q Consensus 213 ~V~gyPTI~lf~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~~~~kv~Vl~F~~~~~~~ 292 (689)
|+++|||++|++|.. ...|.|.++.+.|++|+.+.+ .|....+++.+.++.|+.... .+.|.||.+.+...
T Consensus 73 -v~~~Ptl~~~~~g~~----~~~~~G~~~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~--~~vv~~~~~~~~~~ 143 (481)
T 3f8u_A 73 -VSGYPTLKIFRDGEE----AGAYDGPRTADGIVSHLKKQA--GPASVPLRTEEEFKKFISDKD--ASIVGFFDDSFSEA 143 (481)
T ss_dssp -CCEESEEEEEETTEE----EEECCSCSSHHHHHHHHHHHT--SCSEEEECSHHHHHHHTTSSS--CEEEEEESCTTCHH
T ss_pred -CCCCCEEEEEECCCE----EEEECCCCCHHHHHHHHHHHC--CCCCEECCCHHHHHHHHHCCC--CEEEEEECCCCCCH
T ss_conf -977887999828964----145238547999999998653--567355378899999972288--38999979876616
Q ss_pred CHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHCCCCCCCEEEEEE------CCCCCCEEEC-CCCCHHHHHHHHHHCCC
Q ss_conf 0999999984045751899981134217788446999999899980------9999803325-99995789999984278
Q 005592 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLK------DPGVKPVVYY-GSFNNSRLSEVMEQNKL 365 (689)
Q Consensus 293 ~~~~r~~A~~~~~~~~Fg~V~~~~~~s~~l~~~f~V~~~PtIvifk------~~~~~p~~y~-g~~~~~~L~~fI~~~k~ 365 (689)
...+..+|..+++.+.|+.+. ...++++|+++.. .|++|+ ..+..+..|. |.++.+.|.+||..+++
T Consensus 144 ~~~f~~~a~~~~~~~~F~~~~-----~~~~~~~~~v~~~-~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~ 217 (481)
T 3f8u_A 144 HSEFLKAASNLRDNYRFAHTN-----VESLVNEYDDNGE-GIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIF 217 (481)
T ss_dssp HHHHHHHHHHHTTTSCEEEEC-----CHHHHHHHCSSSE-EEEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCEEEEEC-----CHHHHHHHCCCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 999999999844675499977-----7999997089998-4899955323576677652057899898999999997077
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 7774346643221014766866778887520899996479656----799999999999963036665533455661479
Q 005592 366 QELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPE----LNKMRETIRRVQETLLSDDESNAADTDQSLAPA 441 (689)
Q Consensus 366 ~~vp~lts~~~~~~~C~~~~~~~~~k~~~~~lCVIl~~~~~~~----~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~ 441 (689)
|++++++..+.... .. . .++++++...... .+..++.++.+++
T Consensus 218 p~v~e~t~~n~~~~-~~------~------~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~-------------------- 264 (481)
T 3f8u_A 218 GICPHMTEDNKDLI-QG------K------DLLIAYYDVDYEKNAKGSNYWRNRVMMVAK-------------------- 264 (481)
T ss_dssp TTSCEECTTTHHHH-TT------S------SEEEEEECCCTTTCHHHHHHHHHHHHHHHH--------------------
T ss_pred CCCCCCCHHHHHHH-CC------C------CCEEEEEECCCCCCHHHHHHHHHHHHHHHH--------------------
T ss_conf 78524486679986-17------9------805999804501250467999999999999--------------------
Q ss_pred HHHCCCC--CEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 9871898--18999995722089989761467742324776789999929999963288754421403567643433334
Q 005592 442 AVAFRNK--RLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQ 519 (689)
Q Consensus 442 A~~~k~~--~v~F~wvd~~~q~~f~~~f~~~~~~~~~c~~~~~~~~~P~ivI~~~rrn~~~~~~k~~~~~w~~l~~~~~~ 519 (689)
.++++ .+.|+|+|++.....++.|.... ...+.|.++|+ +... .+|. + ++
T Consensus 265 --~~~~k~~~i~F~~~D~~~~~~~l~~~gl~~----------~~~~~P~~~i~----~~~~--~ky~------~---~~- 316 (481)
T 3f8u_A 265 --KFLDAGHKLNFAVASRKTFSHELSDFGLES----------TAGEIPVVAIR----TAKG--EKFV------M---QE- 316 (481)
T ss_dssp --HHHHTTCCCEEEEEETTTTHHHHGGGTCCC----------CTTCSCEEEEE----CSSS--CEEE------C---CS-
T ss_pred --HHCCCCCEEEEEEECHHHHHHHHHHCCCCC----------CCCCCCEEEEE----CCCC--CCCC------C---CC-
T ss_conf --705877368999976899799999859985----------45778689997----6877--6668------9---85-
Q ss_pred CCCCCCCCHHCCCCCCCHH--HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6784220011048998667--999999999507998877864577998888
Q 005592 520 EVDPASQLVVRYNGSDEIP--QIAKWVSEIIQDGDSKDLPFYRAKTPELVP 568 (689)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~--~i~~~i~~~~~~g~~~~~~~~~~~~p~l~~ 568 (689)
+. +.+ .|..|+.+++. +.....+.++.+|+-.+
T Consensus 317 ~~--------------t~e~~~l~~f~~~~~~--g~~~~~~~s~~~p~~~~ 351 (481)
T 3f8u_A 317 EF--------------SRDGKALERFLQDYFD--GNLKRYLKSEPIPESND 351 (481)
T ss_dssp CC--------------CTTSHHHHHHHHHHHH--TCCCCCCCCCCCCSCCC
T ss_pred CC--------------CCCHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCC
T ss_conf 46--------------8467899999999754--77630001688887788
No 6
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=1.00 E-value=1 Score=278.22 Aligned_cols=336 Identities=14% Similarity=0.145 Sum_probs=244.3
Q ss_pred CCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHHHCCCCCCCC
Q ss_conf 520699257897663479997799997399967768439999999997223-4210001220245558776289873342
Q 005592 135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFF 213 (689)
Q Consensus 135 ~~~V~~Lt~~nF~~~I~~~~~~LV~FYapwCghCk~laP~w~evA~~L~g~-~~va~VDc~e~~~~~~La~k~~i~~~F~ 213 (689)
.+.|..||.++|+..+.++++|+|+||||||+||+++.|+|+++|+.+++. +.+++|||++++ .+|++++
T Consensus 13 ~~~v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~---~l~~~~~------ 83 (504)
T 2b5e_A 13 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ---DLCMEHN------ 83 (504)
T ss_dssp TSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH---HHHHHTT------
T ss_pred CCCCEECCHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH---HHHHHCC------
T ss_conf 8873887887899998449959999989989778876899999999715698699999898778---8998558------
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCCEEEEEEECCCCCCC
Q ss_conf 02301899749999799982212466588899999999750179410014301335454213999479999807999970
Q 005592 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERAS 293 (689)
Q Consensus 214 V~gyPTI~lf~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~~~~kv~Vl~F~~~~~~~~ 293 (689)
|++|||+++|.+|... ....|.|.++.+.|++|+.+.+ .|....+++ ++.|+.......+.|++|.+......
T Consensus 84 v~~~Pt~~~~~~g~~~--~~~~~~G~~~~~~l~~~l~~~~--~~~v~~i~~---~~~~~~~~~~~~~~v~~f~~~~~~~~ 156 (504)
T 2b5e_A 84 IPGFPSLKIFKNSDVN--NSIDYEGPRTAEAIVQFMIKQS--QPAVAVVAD---LPAYLANETFVTPVIVQSGKIDADFN 156 (504)
T ss_dssp CCSSSEEEEEETTCTT--CEEECCSCCSHHHHHHHHHHHT--SCSEEECSC---HHHHHHHSCCSSCEEEEEESCCHHHH
T ss_pred CCCCCEEEEEECCCCC--CCEEECCCCCHHHHHHHHHHHC--CCCCEEHHH---HHHHHHCCCCCEEEEEEECCCCCHHH
T ss_conf 8768779998189614--4145248889999999998754--776314788---99997367885399999478773689
Q ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEECCC-C---CHHHHHHHHHHCCCCCCC
Q ss_conf 999999984045751899981134217788446999999899980999980332599-9---957899999842787774
Q 005592 294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-F---NNSRLSEVMEQNKLQELP 369 (689)
Q Consensus 294 ~~~r~~A~~~~~~~~Fg~V~~~~~~s~~l~~~f~V~~~PtIvifk~~~~~p~~y~g~-~---~~~~L~~fI~~~k~~~vp 369 (689)
..++.+|..+++.+.|+.+. .+.++|+++ +++|++.+ .++.|.|. + +...|.+||..+.+|.++
T Consensus 157 ~~f~~~A~~~~~~~~F~~~~-------~~~~~~~~~----i~l~~~~~-~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~ 224 (504)
T 2b5e_A 157 ATFYSMANKHFNDYDFVSAE-------NADDDFKLS----IYLPSAMD-EPVVYNGKKADIADADVFEKWLQVEALPYFG 224 (504)
T ss_dssp HHHHHHHHHTTTTCEEEEEE-------CTTSCCEEE----EEETTEEE-EEEECCSCHHHHTSHHHHHHHHHHHSSCSSC
T ss_pred HHHHHHHHHHHCCCEEEEEH-------HHHHHCCCE----EEECCCCC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 99999999754373799888-------888754972----89647877-6521577435657999999999861548731
Q ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 34664322101476686677888752089999647965679999999999996303666553345566147998718981
Q 005592 370 QLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGRLSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRNKR 449 (689)
Q Consensus 370 ~lts~~~~~~~C~~~~~~~~~k~~~~~lCVIl~~~~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~k~~~ 449 (689)
+++..+..+ ++.. +. .+ ++++.......+..+..+++++. .++++
T Consensus 225 ~~t~~~~~~-~~~~------~~----~~-~~l~~~~~~~~~~~~~~l~~~a~----------------------~~~~~- 269 (504)
T 2b5e_A 225 EIDGSVFAQ-YVES------GL----PL-GYLFYNDEEELEEYKPLFTELAK----------------------KNRGL- 269 (504)
T ss_dssp BCCHHHHHH-HHHT------TS----CE-EEEEESSHHHHHHHHHHHHHHHH----------------------HTTTT-
T ss_pred CCCHHHHHH-HHCC------CC----CE-EEEEECCCCCHHHHHHHHHHHHH----------------------HCCCE-
T ss_conf 277768999-8467------77----37-99994372018999999999999----------------------63781-
Q ss_pred EEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 89999957220899897614677423247767899999299999632887544214035676434333346784220011
Q 005592 450 LTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQLVV 529 (689)
Q Consensus 450 v~F~wvd~~~q~~f~~~f~~~~~~~~~c~~~~~~~~~P~ivI~~~rrn~~~~~~k~~~~~w~~l~~~~~~~~~~~~~~~~ 529 (689)
+.|+|+|++.+..+++.|...+ ++|.++|+ +... ..+|. +..+ +++ + .+
T Consensus 270 i~F~~id~~~~~~~~~~~gl~~-------------~~P~v~i~----~~~~-~~ky~---~~~~----~~~-~-----~~ 318 (504)
T 2b5e_A 270 MNFVSIDARKFGRHAGNLNMKE-------------QFPLFAIH----DMTE-DLKYG---LPQL----SEE-A-----FD 318 (504)
T ss_dssp CEEEEEEHHHHTTHHHHTTCCS-------------CSSEEEEE----ETTT-TEEEE---CCCC----CHH-H-----HH
T ss_pred EEEEEEEHHHHHHHHHHCCCCC-------------CCCEEEEE----ECCC-CCCCC---CCCC----CCC-H-----HH
T ss_conf 5999983066599999728744-------------59879999----6786-76017---8877----510-0-----00
Q ss_pred CCCCC--CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 04899--86679999999995079988778645779988
Q 005592 530 RYNGS--DEIPQIAKWVSEIIQDGDSKDLPFYRAKTPEL 566 (689)
Q Consensus 530 ~~~~~--~~~~~i~~~i~~~~~~g~~~~~~~~~~~~p~l 566 (689)
.+.+. .+.+.|..|+.+++. +...+.+.++.+|+-
T Consensus 319 ~~~~~~~~~~~~l~~f~~~~~~--g~~~p~~~s~~~p~~ 355 (504)
T 2b5e_A 319 ELSDKIVLESKAIESLVKDFLK--GDASPIVKSQEIFEN 355 (504)
T ss_dssp TCCSCCCCCHHHHHHHHHHHHH--TCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHC--CCCCHHHHCCCCCCC
T ss_conf 0256545689999999999974--888803315789855
No 7
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=1.00 E-value=1 Score=275.52 Aligned_cols=197 Identities=26% Similarity=0.497 Sum_probs=167.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCC
Q ss_conf 68431018678999999999999999851999999---807999999999977199246643200287013345543101
Q 005592 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILEKVRE 113 (689)
Q Consensus 37 ~d~Y~vLgv~~~a~~~~ik~ayr~l~~~~HPD~~~---~~~e~f~~i~~Aye~L~d~~~r~~yd~~g~~~~~~~~~~~~~ 113 (689)
.|||+||||+++|+.++||+|||+|+++||||+++ .+.++|.+|++||++|+||.+|+.||.+|..+.... .++
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~---~~~ 78 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN---QGG 78 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTT---CSC
T ss_pred CCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCC---CCC
T ss_conf 78799869999989999999999999987959899975899999999999999679999999987523255655---545
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 24754323356898777898752069925789766347999779999739996776843999999999722342100012
Q 005592 114 QYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL 193 (689)
Q Consensus 114 ~~~~~~f~~~~f~~~~~~~~~~~~V~~Lt~~nF~~~I~~~~~~LV~FYapwCghCk~laP~w~evA~~L~g~~~va~VDc 193 (689)
++..+.|....|+++... ..|..++..+|+..+.++++++|.||++||++|+.+.|.|+++++.+.+.+.++.|||
T Consensus 79 ~~~~~~~~~~~fg~~~~~----~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~ 154 (210)
T 3apq_A 79 QYESWSYYRYDFGIYDDD----PEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNC 154 (210)
T ss_dssp CCCCHHHHHHSSSTTTTC----TTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCC----CCEEEECHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 446664201233455799----8538853888999872698389987489976688877999999998507648999979
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 202455587762898733420230189974999979998221246658889999999975
Q 005592 194 GDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (689)
Q Consensus 194 ~e~~~~~~La~k~~i~~~F~V~gyPTI~lf~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v 253 (689)
+++. .+|++++ |.++||+++|.+|.. ...|.|.++.+.|.+|+.+.+
T Consensus 155 ~~~~---~l~~~~~------v~~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~l 201 (210)
T 3apq_A 155 GDDR---MLCRMKG------VNSYPSLFIFRSGMA----AVKYNGDRSKESLVAFAMQHV 201 (210)
T ss_dssp TTCH---HHHHHTT------CCSSSEEEEECTTSC----CEECCSCCCHHHHHHHHHHHH
T ss_pred CCCH---HHHHHCC------CCCCCEEEEEECCCC----EEEECCCCCHHHHHHHHHHHC
T ss_conf 7638---8899759------985776999978971----057568789999999999858
No 8
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=1.00 E-value=1 Score=223.30 Aligned_cols=318 Identities=15% Similarity=0.158 Sum_probs=231.9
Q ss_pred EEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 06992578976634799977999973999677684399999999972234210001220245558776289873342023
Q 005592 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (689)
Q Consensus 137 ~V~~Lt~~nF~~~I~~~~~~LV~FYapwCghCk~laP~w~evA~~L~g~~~va~VDc~e~~~~~~La~k~~i~~~F~V~g 216 (689)
.|.++|.++|+.. .+++++|.||++||++|+++.|.|+++|+.+++.+.++.|||+++.. +|+.++ |++
T Consensus 441 ~v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~---~~~~~~------v~~ 509 (780)
T 3apo_A 441 HVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEG---LCNMYN------IQA 509 (780)
T ss_dssp CEEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH---HHHHTT------CCS
T ss_pred CCEECCHHHHHHC--CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHH---HHHHCC------CCC
T ss_conf 7776687789870--89869999989999889987699999999852784999996788799---999829------876
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCC-EEEEEEECC---CCCC
Q ss_conf 018997499997999822124665888999999997501794100143013354542139994-799998079---9997
Q 005592 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHK-VKVIFFSKT---GERA 292 (689)
Q Consensus 217 yPTI~lf~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP~~~~it~~~~~~~Fl~~~~~~k-v~Vl~F~~~---~~~~ 292 (689)
+||+++|.+|. ...|.|.++.+.|.+|+.+.+. |.+..++..+ ++.++.....+. ++|.|+..- |...
T Consensus 510 ~Pt~~~~~~g~-----~~~~~g~~~~~~l~~fi~~~~~--~~v~~l~~~~-f~~~v~~~~~~~~~lv~F~ap~C~~c~~~ 581 (780)
T 3apo_A 510 YPTTVVFNQSS-----IHEYEGHHSAEQILEFIEDLRN--PSVVSLTPST-FNELVKQRKHDEVWMVDFYSPWSHPSQVL 581 (780)
T ss_dssp SSEEEEEETTE-----EEEECSCSCHHHHHHHHHHHHS--CSEEECCHHH-HHHHTTTCCTTCCEEEEEECTTCHHHHHH
T ss_pred CCEEEEECCCC-----EEEECCCCCHHHHHHHHHHHCC--CCEEECCCCC-HHHHHHCCCCCCEEEEEEECCCCHHHHHH
T ss_conf 88699972895-----0231375558899999875056--6335257302-78886336778707999989989789985
Q ss_pred CHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHCCCCCCCEEEEEECCCC---CCEEECC-CCCHHHHHHHHHHCCCCCC
Q ss_conf 09999999840457518999811342177884469999998999809999---8033259-9995789999984278777
Q 005592 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV---KPVVYYG-SFNNSRLSEVMEQNKLQEL 368 (689)
Q Consensus 293 ~~~~r~~A~~~~~~~~Fg~V~~~~~~s~~l~~~f~V~~~PtIvifk~~~~---~p~~y~g-~~~~~~L~~fI~~~k~~~v 368 (689)
.+.+..+|..+++.+.|+.+... ....++.+|+|..+|+|++|+.+.. .+..|.| .++.+.|.+|+..+..+.+
T Consensus 582 ~p~~~~lA~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~~~v 659 (780)
T 3apo_A 582 MPEWKRMARTLTGLINVGSVDCG--QYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQAS 659 (780)
T ss_dssp HHHHHHHHHHHTTTSEEEEEETT--TTHHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSCCCS
T ss_pred HHHHHHHHHHHHCCEEEEEEECC--CHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 49999999996578389999895--0288898749987986999748986766522237888877999998764256554
Q ss_pred CCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 434664322101476686677888752089999647-9656799999999999963036665533455661479987189
Q 005592 369 PQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMRETIRRVQETLLSDDESNAADTDQSLAPAAVAFRN 447 (689)
Q Consensus 369 p~lts~~~~~~~C~~~~~~~~~k~~~~~lCVIl~~~-~~~~~~~~~~~lr~~a~~~~~~~~~~~~~~~~~~~~~A~~~k~ 447 (689)
..++..+..+.++.. ++ .++|.+.. -......+...+.++++ .+++
T Consensus 660 ~~l~~~~~~~~~~~~------~~-----~v~v~F~a~wC~~C~~~~p~~~~la~----------------------~~~~ 706 (780)
T 3apo_A 660 IDLTPQTFNEKVLQG------KT-----HWVVDFYAPWSGPSQNFAPEFELLAR----------------------MIKG 706 (780)
T ss_dssp EEECHHHHHHHTTTC------SS-----CEEEEEECTTCHHHHHHHHHHHHHHH----------------------HHTT
T ss_pred CCCCHHHHHHHHHCC------CC-----EEEEEEECCCCHHHHHHHHHHHHHHH----------------------HHCC
T ss_conf 307888889998669------97-----49999989999789999999999999----------------------8458
Q ss_pred CCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 81899999572208998976146774232477678999992999996328875442140356764343333467842200
Q 005592 448 KRLTFAWLDGEAQDRYCSFYLFSETSFETCGARRDMSDVPRLFIVRYKRNTTEDEAKIERKPRNIWDAMQEQEVDPASQL 527 (689)
Q Consensus 448 ~~v~F~wvd~~~q~~f~~~f~~~~~~~~~c~~~~~~~~~P~ivI~~~rrn~~~~~~k~~~~~w~~l~~~~~~~~~~~~~~ 527 (689)
.+.|++||++..+++++.|-.. .+|.++++ .......++.- . .
T Consensus 707 -~~~~~~vd~~~~~~~~~~~~v~--------------~~Pt~~~~----~~g~~~~~~~G-----~---~---------- 749 (780)
T 3apo_A 707 -KVRAGKVDCQAYPQTCQKAGIK--------------AYPSVKLY----QYERAKKSIWE-----E---Q---------- 749 (780)
T ss_dssp -TCEEEEEETTTCHHHHHHTTCC--------------SSSEEEEE----EEETTTTEEEE-----E---E----------
T ss_pred -CCEEEEEECCCCHHHHHHCCCC--------------CCCEEEEE----CCCCCCCCCCC-----C---C----------
T ss_conf -8269999897779999866987--------------47779998----28873431357-----6---5----------
Q ss_pred HHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 1104899866799999999950
Q 005592 528 VVRYNGSDEIPQIAKWVSEIIQ 549 (689)
Q Consensus 528 ~~~~~~~~~~~~i~~~i~~~~~ 549 (689)
.|....++|..||.+.+.
T Consensus 750 ----~g~~~~~~l~~~l~~~l~ 767 (780)
T 3apo_A 750 ----INSRDAKTIAALIYGKLE 767 (780)
T ss_dssp ----ECCCCHHHHHHHHHHHTT
T ss_pred ----CCCCCHHHHHHHHHHHHH
T ss_conf ----677689999999999988
No 9
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=223.25 Aligned_cols=229 Identities=16% Similarity=0.248 Sum_probs=181.5
Q ss_pred CCEEEEECCCCCCCCC-CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCC
Q ss_conf 5206992578976634-799977999973999677684399999999972234210001220245558776289873342
Q 005592 135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (689)
Q Consensus 135 ~~~V~~Lt~~nF~~~I-~~~~~~LV~FYapwCghCk~laP~w~evA~~L~g~~~va~VDc~e~~~~~~La~k~~i~~~F~ 213 (689)
.+.|++||.++|+..| ..+++++|.||||||++|+++.|+|++++..+.+.+.++.|||+... ...+|++++
T Consensus 16 ~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~-~~~l~~~~~------ 88 (298)
T 3ed3_A 16 DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNK-NKALCAKYD------ 88 (298)
T ss_dssp CTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTT-THHHHHHTT------
T ss_pred CCCEEEECHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-CHHHHHHCC------
T ss_conf 9874990789999999738995999998999988999999999999971678579999856765-799998579------
Q ss_pred CCCCCEEEECCCCCCC-------------CCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCEECCCCHHHHHHHHHCCCCC
Q ss_conf 0230189974999979-------------9982212466588899999999750179-4100143013354542139994
Q 005592 214 RRGLPSLVAFPPGCKS-------------SDCMTRFEGELSVDAVTDWFATAILKLP-RIFYYTKESMGKNFLAKTGPHK 279 (689)
Q Consensus 214 V~gyPTI~lf~~g~~~-------------~~~~~~Y~G~rs~~~Iv~fi~k~v~~lP-~~~~it~~~~~~~Fl~~~~~~k 279 (689)
|.++||+++|.+|... ......|.|.++.+.|++|+.+. ++ ....+++.+.++.|+... +.
T Consensus 89 I~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~---~~~~v~~i~~~~~l~~~l~~~--~~ 163 (298)
T 3ed3_A 89 VNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSR---IRSYVKKFVRIDTLGSLLRKS--PK 163 (298)
T ss_dssp CCBSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTT---CCCCEEECSCGGGHHHHHTSC--SS
T ss_pred CCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHH---CCCCCEECCCHHHHHHHHHCC--CC
T ss_conf 8712569999899550024554432222456631204876999999999974---633027768899999998348--96
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHH--HHCC-----C-------------CCCCEEEEEEC
Q ss_conf 79999807999970999999984045751899981134217788--4469-----9-------------99998999809
Q 005592 280 VKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWW--NTFE-----V-------------ESAPAIVFLKD 339 (689)
Q Consensus 280 v~Vl~F~~~~~~~~~~~r~~A~~~~~~~~Fg~V~~~~~~s~~l~--~~f~-----V-------------~~~PtIvifk~ 339 (689)
+.|++|+.+. ...+.++.+|..|++.+.|+.+...+. ..+. ++|+ | ...|+|++|+.
T Consensus 164 ~~vi~fs~~~-~~~~~f~~~A~~~~~~~~F~~v~~~~~--a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~ 240 (298)
T 3ed3_A 164 LSVVLFSKQD-KISPVYKSIALDWLGKFDFYSISNKKL--KQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDA 240 (298)
T ss_dssp EEEEEEESSS-SCCHHHHHHHHHTBTTEEEEEEEGGGC--CCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEET
T ss_pred EEEEEECCCC-CCHHHHHHHHHHHHCCCEEEEECCHHH--HHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCEEEEECC
T ss_conf 3999983898-604999999998556818999741576--5444244430147540233310111344567876999758
Q ss_pred CCCCCEEECC-CCCHHHHHHHHH--HCCCCCCCCCCCCCHHH
Q ss_conf 9998033259-999578999998--42787774346643221
Q 005592 340 PGVKPVVYYG-SFNNSRLSEVME--QNKLQELPQLRSVTSME 378 (689)
Q Consensus 340 ~~~~p~~y~g-~~~~~~L~~fI~--~~k~~~vp~lts~~~~~ 378 (689)
...+++.|.| .++.+.|.+||. .+++|.+++|+....+.
T Consensus 241 ~~~~~~~y~g~~~~~~~i~~fi~~~~~~~p~~~~ls~~~~~~ 282 (298)
T 3ed3_A 241 DKDKFWEYEGNSINKNDISKFLRDTFSITPNEGPFSRRSEYI 282 (298)
T ss_dssp TTTEEEECCCSSCCHHHHHHHHHHHHTCCCSSSTTSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 788168803653788999999986527788747774078899
No 10
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=1.00 E-value=1 Score=188.01 Aligned_cols=209 Identities=16% Similarity=0.250 Sum_probs=161.4
Q ss_pred CEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCC---CCEEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf 20699257897663479997799997399967768439999999997223---421000122024555877628987334
Q 005592 136 HAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIF 212 (689)
Q Consensus 136 ~~V~~Lt~~nF~~~I~~~~~~LV~FYapwCghCk~laP~w~evA~~L~g~---~~va~VDc~e~~~~~~La~k~~i~~~F 212 (689)
+.|..|+.++|+..+.++++++|.||++||++|+++.|.|+++++.+.+. +.++.|||+++. .+|++++
T Consensus 15 ~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~---~l~~~~~----- 86 (241)
T 3idv_A 15 NGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSAS---VLASRFD----- 86 (241)
T ss_dssp TTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCH---HHHHHTT-----
T ss_pred CCCEEECCCCHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH---HHHHHCC-----
T ss_conf 98279053478999726991999998997878897649999999998603884699998664778---8898659-----
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC----CCCEE-CCCCHHHHHHHHHCCCCCEEEEEEE-
Q ss_conf 20230189974999979998221246658889999999975017----94100-1430133545421399947999980-
Q 005592 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKL----PRIFY-YTKESMGKNFLAKTGPHKVKVIFFS- 286 (689)
Q Consensus 213 ~V~gyPTI~lf~~g~~~~~~~~~Y~G~rs~~~Iv~fi~k~v~~l----P~~~~-it~~~~~~~Fl~~~~~~kv~Vl~F~- 286 (689)
|+++||+++|.+|.. ..|.|.++.+.|.+|+.+.+... +.... ++..+ ++.++... ++.++.|.
T Consensus 87 -v~~~Pt~~~~~~g~~-----~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~v~f~a 156 (241)
T 3idv_A 87 -VSGYPTIKILKKGQA-----VDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKEN-FDEVVNDA---DIILVEFYA 156 (241)
T ss_dssp -CCSSSEEEEEETTEE-----EECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTT-HHHHHHHC---SEEEEEEEC
T ss_pred -CCCCCEEEEECCCCC-----CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCHHH-HHHHHCCC---CEEEEEEEC
T ss_conf -886878999718973-----44457555788898876414765344553101125888-99763469---749999988
Q ss_pred C---CCCCCCHHHHHHHHHCCCC---CEEEEEEECCCCCHHHHHHCCCCCCCEEEEEECCCCCCEEECCCCCHHHHHHHH
Q ss_conf 7---9999709999999840457---518999811342177884469999998999809999803325999957899999
Q 005592 287 K---TGERASPFVRQISRNYWAY---ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (689)
Q Consensus 287 ~---~~~~~~~~~r~~A~~~~~~---~~Fg~V~~~~~~s~~l~~~f~V~~~PtIvifk~~~~~p~~y~g~~~~~~L~~fI 360 (689)
. .|....+.+..++..+... +.|+.+.... ...++++|+|..+||+++|+++ +++.|.|..+.+.|.+|+
T Consensus 157 ~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~g--~~~~~~g~~~~~~l~~~l 232 (241)
T 3idv_A 157 PWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA--ETDLAKRFDVSGYPTLKIFRKG--RPYDYNGPREKYGIVDYM 232 (241)
T ss_dssp TTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT--CHHHHHHTTCCSSSEEEEEETT--EEEECCSCCSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC--CHHHHHHCCCCCCCEEEEEECC--EEEEECCCCCHHHHHHHH
T ss_conf 888788876789999999986328967999998987--7878987298636879999899--688825878989999999
Q ss_pred HHCCCC
Q ss_conf 842787
Q 005592 361 EQNKLQ 366 (689)
Q Consensus 361 ~~~k~~ 366 (689)
..+.-+
T Consensus 233 ~~~~~~ 238 (241)
T 3idv_A 233 IEQSGA 238 (241)
T ss_dssp HHHTTC
T ss_pred HHHHCC
T ss_conf 962288
Done!