BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005593
(689 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255561389|ref|XP_002521705.1| poly(A) polymerase, putative [Ricinus communis]
gi|223539096|gb|EEF40692.1| poly(A) polymerase, putative [Ricinus communis]
Length = 675
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/633 (57%), Positives = 458/633 (72%), Gaps = 43/633 (6%)
Query: 1 MAILLQAKDRLLSRLKSLTKIQLKQRFNHTL---EPQMCREMCSDSFNQE---VDVSNWK 54
MAI+ +AK SRL++LT +Q RFNH+L P R + SDS +Q+ +D+S WK
Sbjct: 1 MAIIFRAKSCFASRLRNLTTLQ---RFNHSLIEQTPLYPRMISSDSKDQQSTVIDISKWK 57
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
+++ +GI R+MIP W+VLKIL ++GF+AYLVGGCVRDLLL R+PKDFDVITTA LK
Sbjct: 58 KINASAVGIKRSMIPPSPWLVLKILHNKGFEAYLVGGCVRDLLLNRIPKDFDVITTAKLK 117
Query: 115 QIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDL 174
Q+++QFHR EI+GRRFPICRVH+KGSV+EVSSFETVA+H EGKE VL+SQ P GC+ D
Sbjct: 118 QVKKQFHRCEIVGRRFPICRVHVKGSVVEVSSFETVAQHNEGKEEVLISQKPSGCNGRDF 177
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
+RWRNS+HRDFTINSLFFDPF+N+I+DYANG++DL LKLRT+IPA LSF EDCARILRG
Sbjct: 178 IRWRNSMHRDFTINSLFFDPFMNQIFDYANGMADLSFLKLRTVIPARLSFQEDCARILRG 237
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
LRIA RLGLS KD ++A+ LSSS++ LDK+RIMMELNYMLSYGAAES+I LL+R+NLL
Sbjct: 238 LRIAGRLGLSISKDTESAIRKLSSSVKSLDKARIMMELNYMLSYGAAESTIYLLQRFNLL 297
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVS 354
++ LPFHAAYL QQAG+ + +MLM+LFFNLD LVSCDRP +LWVGLL+FHQALV+
Sbjct: 298 ELFLPFHAAYLSQQAGETFSLGSVMLMKLFFNLDTLVSCDRPCTSSLWVGLLAFHQALVT 357
Query: 355 DPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTEL 414
+PQDA V WVFASVLYHGKWK+GV+FAR+ AK VKF PEISGFSE +SDE+LA +V+ L
Sbjct: 358 NPQDALVSWVFASVLYHGKWKDGVEFARENAKMQVKFAPEISGFSEFKSDEELAEEVSHL 417
Query: 415 ALSVQDCVNDL--------------TKASSGYVFVSKKIERNVQQIFDVLVNSIESYNSG 460
A VQD V+ L +SSG VFVSKKI +V Q+F+VLV+ +ESY +
Sbjct: 418 ASLVQDSVDALMDTDTLAQSMSRFGVTSSSGLVFVSKKIANDVAQLFNVLVDDVESYKTE 477
Query: 461 KRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLDK------- 513
+ S +IDY +LGKGN ETRFVLGK+IL+T+SGGL G E E+ P+V+++
Sbjct: 478 RESFMIDYYLLGKGNQHETRFVLGKVILETLSGGLTKGVEV--AEDGPKVIEEKHDSKLS 535
Query: 514 DSVENYLAK-KNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEE 572
D V++Y+ + K L P E K + S E KEDV+ K + E
Sbjct: 536 DLVKDYMVEWKEEIPVLSPLDHEHSQKKTGNKRKLVMTKSFYEEKVATKEDVL-KNKSEA 594
Query: 573 I----HKAVKNCQLPDKELKVRTTEKHKWIENS 601
+ K +K QLP+ E K KH ENS
Sbjct: 595 VAKKPQKILKITQLPELEKK-----KHHLSENS 622
>gi|224084064|ref|XP_002307206.1| predicted protein [Populus trichocarpa]
gi|222856655|gb|EEE94202.1| predicted protein [Populus trichocarpa]
Length = 458
Score = 593 bits (1529), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/463 (63%), Positives = 360/463 (77%), Gaps = 19/463 (4%)
Query: 48 VDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDV 107
VD S W+ V++R GITR+MIP W VLK+L+ GF+AYLVGGCVRDLLL RVPKDFDV
Sbjct: 1 VDRSKWRKVNARYHGITRSMIPDAPWTVLKLLRVGGFEAYLVGGCVRDLLLNRVPKDFDV 60
Query: 108 ITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPY 167
ITTANL+QI+++FHR+ I+GRRFPIC VH+KGSVIEVSSFET A+ + KE VLLSQ+
Sbjct: 61 ITTANLQQIKKKFHRAHIVGRRFPICIVHVKGSVIEVSSFETSAQQCQEKEKVLLSQMRR 120
Query: 168 GCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
CDE D + W+NS+ RDFTINSLFFDPF+N+IYDYANG+ D+R LKL+TLIPA LSF ED
Sbjct: 121 SCDEKDFLLWKNSMQRDFTINSLFFDPFMNRIYDYANGMEDVRSLKLQTLIPARLSFQED 180
Query: 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
CARILRG+RIA RLGLS KD +TA+ L SS++ L+K RI MELNYMLSYGAAES+I L
Sbjct: 181 CARILRGIRIAGRLGLSISKDTETAICKLQSSVKSLNKDRIKMELNYMLSYGAAESTILL 240
Query: 288 LRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLS 347
L+R++LLKI LPFHAAYL +QA +++A+ MLM+L ++LDK+VS DRP D +LWVGLL+
Sbjct: 241 LQRFHLLKIFLPFHAAYLHEQADEVSAQGSTMLMKLLYSLDKIVSSDRPCDCSLWVGLLA 300
Query: 348 FHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQL 407
FHQALV +PQDAFV+W FAS+LY G W+EGVKFAR+ AK +FVPEISGFSEI+SDE+L
Sbjct: 301 FHQALVLNPQDAFVIWAFASILYCGTWQEGVKFARENAKVEGRFVPEISGFSEIKSDEKL 360
Query: 408 AVKVTELALSVQDCVNDLTKASS--------------GYVFVSKKIERNVQQIFDVLVNS 453
A +V++LA VQD VN T S +VFVSKKI + +F
Sbjct: 361 AEEVSQLASLVQDAVNAFTDEISLSESLSRYLDPPLDVFVFVSKKIGEHAGLLF-----H 415
Query: 454 IESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLV 496
++S + S IDYD+L KG+L ETRFVLGK+ILKT+SGGLV
Sbjct: 416 MQSCEYRRESFKIDYDLLVKGDLYETRFVLGKVILKTLSGGLV 458
>gi|449456945|ref|XP_004146209.1| PREDICTED: uncharacterized protein LOC101212579 [Cucumis sativus]
Length = 810
Score = 580 bits (1494), Expect = e-162, Method: Compositional matrix adjust.
Identities = 324/668 (48%), Positives = 420/668 (62%), Gaps = 56/668 (8%)
Query: 49 DVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVI 108
D+ W ++ R G+TR+MIP SW VL++L +GF+AYLVGGCVRDLLLRRVPKDFDVI
Sbjct: 76 DMPKWNKINGRAFGLTRSMIPSSSWKVLEVLHREGFEAYLVGGCVRDLLLRRVPKDFDVI 135
Query: 109 TTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYG 168
TTA L QI F RS I+GRRFPIC VHI+GS+ EVSSF+T AKH E + SQIP
Sbjct: 136 TTAGLTQIHNLFCRSRIVGRRFPICMVHIRGSITEVSSFDTAAKHSEENKITAHSQIPKK 195
Query: 169 CDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
CD+ DL+RWRNS+ RDFTINSLFFDPF N IYDYA G++DLR LKLRTLIPA LSF DC
Sbjct: 196 CDKKDLIRWRNSMERDFTINSLFFDPFSNVIYDYAEGMADLRSLKLRTLIPASLSFKLDC 255
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
ARILRGLRIAARLGLS K+ +TA+H S SI LDKSR+MMELNYMLSYGAA S+ LL
Sbjct: 256 ARILRGLRIAARLGLSISKETETAIHKFSPSITSLDKSRLMMELNYMLSYGAAVPSLYLL 315
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
+R+ LL LLPFHAAYLD+Q + ++ + +MLM+LFFNLDKLVSC P++ +WV LL+F
Sbjct: 316 QRFKLLGSLLPFHAAYLDKQGIEKSSLSSVMLMKLFFNLDKLVSCAHPSNCNIWVALLAF 375
Query: 349 HQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLA 408
H ALV++PQ++ VV FA+ LYHG+W EGV +AR+++ + PEI+ ++ +S+E+LA
Sbjct: 376 HLALVNNPQNSLVVLAFAATLYHGEWNEGVNYAREKSLVEINLRPEITRSAKFKSEEKLA 435
Query: 409 VKVTELALSVQDCVNDLT--------------KASSGYVFVSKKIERNVQQIFDVLVNSI 454
VT AL VQ C+ LT ++SG VFVS K R+V IF+VL +
Sbjct: 436 EGVTRFALKVQGCIAALTSKDCLLEAMSTFPASSNSGLVFVSNKTARDVAIIFEVLAKHV 495
Query: 455 ESYNSGKRSHIIDYDMLGKG-NLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLD- 512
+SY K+ IDY LGKG L E R+VLGKIIL+T+ ++ G E I + +D
Sbjct: 496 KSYKDEKKDFKIDYKRLGKGLFLRENRYVLGKIILETLEDAILQGNENIPDRNQNLRIDA 555
Query: 513 ----------KDSVENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKE 562
D V+ L K N+K +PS +E++LK KK K K SI+ ++ N
Sbjct: 556 PTKETSDSPVADLVQEQLVKGNKKVRKRPSVSEVELKANKKYKLVRKEGSISDKVVENGR 615
Query: 563 DVVPKEEVEEIHKAVKNCQLPDKELKVRTTEKHKWIENS--CHFDQELSINEELVQKEGS 620
+ E K V+ QLP ++ E + I S CH L + +E
Sbjct: 616 CI---NMTEMYKKGVEGSQLPLAPME----ESMEPILESRKCH---HLEVRATENMRENP 665
Query: 621 QQLGEETQK--AAKTCQSPEEE----IKVNPEKI---------LEKKDRHSLSTEGTNKK 665
+ +G E +K K Q +E +++NP K+ EKK+ H +S KK
Sbjct: 666 ESMGNEVKKIIPKKAFQKVTKELLHPVEINPRKMDKVAGQEVKSEKKEHHRVS---QGKK 722
Query: 666 RDKQKRAD 673
K+KR D
Sbjct: 723 NIKKKRRD 730
>gi|356495323|ref|XP_003516528.1| PREDICTED: uncharacterized protein LOC100794882 [Glycine max]
Length = 714
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 305/622 (49%), Positives = 398/622 (63%), Gaps = 51/622 (8%)
Query: 8 KDRLLSRLKSLTKIQLKQRFNHTLEPQMCREMCSDSFNQ--------EVDVSNWKTVDSR 59
K +L+RLK+L Q F H+ P+ ++ S + N +DVS WKT+D+
Sbjct: 5 KRGVLTRLKTLVNSH-SQGF-HSPAPKRPKQDPSSTENDLDYSVCRGRIDVSKWKTLDAE 62
Query: 60 NLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQ 119
LGIT +MI PS VLK+L+ +GF++YLVGGCVRDLLL R PKDFDVITTA L ++R Q
Sbjct: 63 ELGITSSMISYPSQFVLKLLRRKGFESYLVGGCVRDLLLNRTPKDFDVITTAKLMEVRAQ 122
Query: 120 FH---RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVR 176
F R+E++GRRFPIC VHIKGSV+EV+SFETVA+ KE L S +P ++ DL R
Sbjct: 123 FRGLARAEVVGRRFPICLVHIKGSVVEVTSFETVARTSNRKEQFLYSLLPKCSNKKDLFR 182
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
+NS+ RDFTINSLF+DPF NKIYDY +G++DLR LKL T+IPA +SF ED RILRG R
Sbjct: 183 CKNSLRRDFTINSLFYDPFANKIYDYTDGMADLRSLKLETVIPAQMSFKEDPGRILRGFR 242
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
IAARLGLS ++ + AM SS ++ LDK++IM+ELNYMLSYGAAE S+ LL ++ LL+
Sbjct: 243 IAARLGLSLSRETEAAMWKYSSLVKSLDKNKIMIELNYMLSYGAAEPSLHLLWKFKLLEF 302
Query: 297 LLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDP 356
LLP HAAYLD+QA K A MLM+LFF LD LV+CDRP D TLWVGLL+FH LV++P
Sbjct: 303 LLPVHAAYLDEQAIKEDAPASNMLMKLFFYLDNLVACDRPCDCTLWVGLLAFHLTLVNNP 362
Query: 357 QDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELAL 416
QDA VVW FASVLYHG+W++G+KFA++ AK V F PEI S +SDE++A VT+LA
Sbjct: 363 QDALVVWAFASVLYHGEWEKGIKFAKEHAKMYVNFAPEIRTSSIYKSDEEIAKAVTKLAS 422
Query: 417 SVQDCV------NDLTKASSGY--------VFVSKKIERNVQQIFDVLVNSIESYNSGKR 462
V + N L ++ S Y +FV KK + IF +L + +E Y + +R
Sbjct: 423 LVMHSIPALVESNSLLQSMSRYPSFPQSDMIFVPKKAGKLASAIFKMLASDVEFYKTERR 482
Query: 463 SHI-IDYDMLGKGNLVETRFVLGKIILKTISGGLVA---------------GEEEIDEEE 506
+ I+Y MLGKG+L E FVLGKI+L+T+S G V G +EI + +
Sbjct: 483 KNSKINYGMLGKGHLSEIAFVLGKIVLETMSSGTVGDGEDSEAGQCHLKTEGTKEIAQSQ 542
Query: 507 MPEVLDKDSV----ENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKE 562
+P++++ + E +L Q S + KL +C +K SS N ELS E
Sbjct: 543 LPDLVNHEVAAMNGEGHLLSIPNSECRQGKSKKRKL-VKNRCIAKKKMSSGNQELS---E 598
Query: 563 DVVPKEEVEEIHKAVKNCQLPD 584
KE EE K VK Q D
Sbjct: 599 KFEYKENKEEQQKLVKLSQKVD 620
>gi|449495173|ref|XP_004159755.1| PREDICTED: uncharacterized LOC101212579 [Cucumis sativus]
Length = 647
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 296/618 (47%), Positives = 381/618 (61%), Gaps = 65/618 (10%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
W ++ R G+TR+MIP SW VL++L +GF+AYLVGGCVRDLLLRRVPKDFDVITTA
Sbjct: 4 WNKINGRAFGLTRSMIPSSSWKVLEVLHREGFEAYLVGGCVRDLLLRRVPKDFDVITTAG 63
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEI 172
L QI F RS I+GRRFPIC VHI+GS+ EVSSF+T AKH E + SQIP CD+
Sbjct: 64 LTQIHNLFCRSRIVGRRFPICMVHIRGSITEVSSFDTAAKHSEENKITAHSQIPKKCDKK 123
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
DL+RWRNS+ RDFTINSLFFDPF N IYDYA G++DLR LKLRTLIPA LSF DCARIL
Sbjct: 124 DLIRWRNSMERDFTINSLFFDPFSNVIYDYAEGMADLRSLKLRTLIPASLSFKLDCARIL 183
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
RGLRIAARLGLS K+ +TA+H S SI LDKSR+MMELNYMLSYGAA S+ LL+R+
Sbjct: 184 RGLRIAARLGLSISKETETAIHKFSPSITSLDKSRLMMELNYMLSYGAAVPSLYLLQRFK 243
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
LL LLPFHAAYLD+Q + ++ + +MLM+LFFNLDKLVSC P++ +WV LL+FH AL
Sbjct: 244 LLGSLLPFHAAYLDKQGIEKSSLSSVMLMKLFFNLDKLVSCAHPSNCNIWVALLAFHLAL 303
Query: 353 VSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVT 412
V++PQ++ VV FA+ LYHG+W EGV +AR+++ + PEI+ ++ +S+E+LA VT
Sbjct: 304 VNNPQNSLVVLAFAATLYHGEWNEGVNYAREKSLVEINLRPEITRSAKFKSEEKLAEGVT 363
Query: 413 ELALSVQDCVNDLT--------------KASSGYVFVSKKIERNVQQIFDVLVNSIESYN 458
AL VQ C+ LT ++SG VFVS K R+V IF+VL + N
Sbjct: 364 RFALKVQGCIAALTSKDCLLEAMSTFPASSNSGLVFVSNKTARDVAIIFEVLAKH-GNEN 422
Query: 459 SGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLDKDSVEN 518
R+ + D K ET S VA D V+
Sbjct: 423 IPDRNQNLRIDAPTK----ET------------SDSPVA----------------DLVQE 450
Query: 519 YLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPKEEVEEIHKAVK 578
L K N+K +PS +E++LK KK K K SI+ ++ N + E K V+
Sbjct: 451 QLVKGNKKVRKRPSVSEVELKANKKYKLVRKEGSISDKVVENGRCI---NMTEMYKKGVE 507
Query: 579 NCQLPDKELKVRTTEKHKWIENS--CHFDQELSINEELVQKEGSQQLGEETQK--AAKTC 634
QLP ++ E + I S CH L + +E + +G E +K K
Sbjct: 508 GSQLPLAPME----ESMEPILESRKCH---HLEVRATENMRENPESMGNEVKKIIPKKAF 560
Query: 635 QSPEEE----IKVNPEKI 648
Q +E +++NP K+
Sbjct: 561 QKVTKELLHPVEINPRKM 578
>gi|357484075|ref|XP_003612324.1| Poly(A) polymerase [Medicago truncatula]
gi|355513659|gb|AES95282.1| Poly(A) polymerase [Medicago truncatula]
Length = 675
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 270/551 (49%), Positives = 376/551 (68%), Gaps = 21/551 (3%)
Query: 48 VDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDV 107
+D+SNWKT D+ LG+T +MI +PS VLK+L+ +G ++YLVGGCVRDL+L R PKDFDV
Sbjct: 16 IDISNWKTFDAWKLGVTGSMISKPSHFVLKLLQDKGLKSYLVGGCVRDLVLNRTPKDFDV 75
Query: 108 ITTANLKQIRRQF----HRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLS 163
+TTA L +++R F HR++++GRRFP+C VH++GSVIEV+SF T ++ + + VL S
Sbjct: 76 VTTAKLIEVKRLFRRFGHRADVVGRRFPVCLVHMQGSVIEVTSFHTESETPKAMKNVLHS 135
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
+P ++ + +NS+ RDFTINSLF+DPF NKIYDYANG++DLR LKL T+IPA +S
Sbjct: 136 LMPKCKNKENRFLCKNSLRRDFTINSLFYDPFANKIYDYANGMADLRSLKLETVIPAQIS 195
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
F ED RILRG RIAARLGLS ++I+ A+ + SS +E L+K R+M+E+NYMLSYGAAE
Sbjct: 196 FKEDPGRILRGFRIAARLGLSLSREIEAAIWTCSSLVEDLNKDRMMIEMNYMLSYGAAEP 255
Query: 284 SICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWV 343
S+ LL ++ LL+ LLP AAYLD+QA K A++ MLM+LFF++D LV C RP+D TLW+
Sbjct: 256 SLRLLWKFKLLQFLLPVQAAYLDEQATKEDAQDSNMLMKLFFHMDNLVGCGRPSDCTLWI 315
Query: 344 GLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIES 403
GLL+FH ALV++PQDA VVW FASVLYHG W+ G+KFA++ AK V F PEI S +S
Sbjct: 316 GLLAFHLALVNNPQDALVVWAFASVLYHGDWEGGIKFAKEHAKMSVNFEPEIKRSSICKS 375
Query: 404 DEQLAVKVTELALSVQDCVN------DLTKASSGY---------VFVSKKIERNVQQIFD 448
DE +A VT+LA V D ++ L+++ S Y + VSKK + V +IF+
Sbjct: 376 DEDIAEAVTKLASLVIDSIHPLVNIESLSQSLSRYPSVPPPHMVLVVSKKTGKAVSEIFE 435
Query: 449 VLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEE-M 507
VLVN I+ Y S ++S I+YDMLG G+ ETRFVLGKI+L+T+ G++ + E+
Sbjct: 436 VLVNDIKFYKSERKSAKINYDMLGSGHTSETRFVLGKIVLQTMQSGIIGDADGFGTEKCH 495
Query: 508 PEVLDKDSVENYLAKKNRKRGLQPSSAELKLKTAKKCKWTEKFSSINHELSMNKEDVVPK 567
P+ + ++++++ L + E + + KK K E + I + + E K
Sbjct: 496 PDTEGTKDFGQLVTREDKRKVLSTPNLEHRPQKLKKQKLAEN-ACIEEQKTGLDEFCKYK 554
Query: 568 EEVEEIHKAVK 578
E EE K VK
Sbjct: 555 ETNEEHQKPVK 565
>gi|297832374|ref|XP_002884069.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297329909|gb|EFH60328.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 761
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 275/537 (51%), Positives = 347/537 (64%), Gaps = 44/537 (8%)
Query: 1 MAILLQAKDRLLSRLKSLTKIQLK-QRFNHTLEPQMCREMCS------DSFNQEVDVSNW 53
MA ++ + R ++L+ K QR N TL + E CS D VD S W
Sbjct: 1 MAGFIRRNGNVFFRSQTLSAFYSKLQRSNCTL-AEGVMEKCSSIRSVIDEDINSVDTSKW 59
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
K V + + GI +MIP+ S VL++L+ QGF AYLVGGCVRDL+L RVPKD+DVITTANL
Sbjct: 60 KKVRASDAGIRNSMIPESSMNVLRLLRRQGFDAYLVGGCVRDLILHRVPKDYDVITTANL 119
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA---------------KHG---- 154
KQIRR FHR+++IG+RFPIC V + GS+IEVSSF+TVA K G
Sbjct: 120 KQIRRLFHRAQVIGKRFPICHVWMGGSIIEVSSFDTVAHSDSEHEDDLEKSKEKSGVSLD 179
Query: 155 -EGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLK 213
E + L + G D D RWRNS+ RDFTINSLF++PF KIYDYANG+ DL LK
Sbjct: 180 TEANKNNSLFTMYSGWDVKDCNRWRNSLQRDFTINSLFYNPFELKIYDYANGMEDLTDLK 239
Query: 214 LRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELN 273
LRTL+PA+LSF EDCARILRGLRIAARLGLS KDI+TA+ SS+ LD+ R++ME+N
Sbjct: 240 LRTLVPAHLSFKEDCARILRGLRIAARLGLSLSKDIETAIPEFVSSVANLDQFRLIMEMN 299
Query: 274 YMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSC 333
YML+YGAA SI LL ++ LL +LLPF AAYLD QA + + + +ML+RLF N+DKLVSC
Sbjct: 300 YMLAYGAAAPSILLLMKFKLLHVLLPFQAAYLD-QASETSLSSSLMLVRLFSNMDKLVSC 358
Query: 334 DRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVP 393
D+PAD LW+ +L+FH ALV +PQ+A VV FA++LYH W + VKFAR+ V + P
Sbjct: 359 DQPADPKLWIAVLAFHIALVRNPQEAIVVRAFAALLYHRNWSKAVKFAREHETSVVGYAP 418
Query: 394 EISGFSEIESDEQLAVKVTELALSVQDCVNDLTKAS--------------SGYVFVSKKI 439
E+S FS SDE LA V+E ++D LT SG VF+ K+
Sbjct: 419 EVSKFSRKRSDEDLAEAVSEFTCLLKDTQYVLTDIEALREALYLYPDFKFSGLVFIPKRK 478
Query: 440 ERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLV 496
R+V + L + +ESY S K IDY +LGKGN E RFVLGKIIL TI+ G+V
Sbjct: 479 GRDVAEGLARL-SDVESYESKKEGFSIDYLLLGKGNPCEVRFVLGKIILDTITEGIV 534
>gi|42569106|ref|NP_179349.2| polynucleotide adenylyltransferase-like protein [Arabidopsis
thaliana]
gi|330251561|gb|AEC06655.1| polynucleotide adenylyltransferase-like protein [Arabidopsis
thaliana]
Length = 757
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 277/557 (49%), Positives = 354/557 (63%), Gaps = 47/557 (8%)
Query: 1 MAILLQAKDRLLSRLKSLTKIQLK-QRFNHTLEPQMCREMCS------DSFNQEVDVSNW 53
MA ++ K + ++L + K QR N TL E CS D VD S W
Sbjct: 1 MAGFIKRKGNVFFHSQALAAVYSKLQRSNCTLAEGFM-EKCSSIRQVIDEDINSVDTSKW 59
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
K V + + GI +MIP+ S VL++L+ QGF AYLVGGCVRDL+L RVPKD+DVITTA+L
Sbjct: 60 KKVRASDAGIKNSMIPESSMNVLRLLRRQGFDAYLVGGCVRDLILNRVPKDYDVITTADL 119
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA-----------KHGEGKETVL- 161
KQIRR FHR+++IG+RFPIC V + GS+IEVSSF+TVA K G +T
Sbjct: 120 KQIRRLFHRAQVIGKRFPICHVWMGGSIIEVSSFDTVAHSDSDLEKSKEKSGVSLDTKAN 179
Query: 162 ----LSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTL 217
L ++ G D D RWRNS+ RDFTINSLF++PF IYDYANG+ DL LKLRTL
Sbjct: 180 KNNSLFKMYSGWDIKDCKRWRNSLQRDFTINSLFYNPFDFTIYDYANGMEDLTDLKLRTL 239
Query: 218 IPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLS 277
+PA+LSF EDCARILRGLRIAARLGLS KD+ TA+ SS+ LD+ R++ME+NYML+
Sbjct: 240 VPAHLSFKEDCARILRGLRIAARLGLSLSKDVKTAIPEFVSSVANLDQFRLIMEMNYMLA 299
Query: 278 YGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPA 337
YGAA SI LL ++ LL +LLPF AAYLD QA K + + +ML+RLF N+DKLVSCD+PA
Sbjct: 300 YGAAAPSILLLMKFKLLHVLLPFQAAYLD-QASKTSLSSSLMLVRLFSNMDKLVSCDQPA 358
Query: 338 DYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISG 397
D LW+ +L+FH ALV +PQ+A VV FA++LYHG W + V+FAR+ + + PE+S
Sbjct: 359 DPKLWIAVLAFHIALVRNPQEAIVVRAFAALLYHGNWSKAVEFAREHETSVIGYAPEVSK 418
Query: 398 FSEIESDEQLAVKVTELALSVQDCVNDLTKAS--------------SGYVFVSKKIERNV 443
S SDE LA V+E ++D LT SG VF+ KK R+V
Sbjct: 419 SSRKRSDEDLAEAVSEFTCLLKDTQYVLTDKEALREALYLYPDFKFSGLVFIPKKKGRDV 478
Query: 444 QQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEID 503
+ F + ++ +ESY S K IDY +LGKGN E RFVLGKIIL TI+ G V
Sbjct: 479 AEGF-MRLSDVESYESQKEGFSIDYVLLGKGNPCEVRFVLGKIILDTITEGTVI------ 531
Query: 504 EEEMPEVLDKDSVENYL 520
E + V K S N++
Sbjct: 532 -EPLNSVKKKQSTRNHI 547
>gi|357120849|ref|XP_003562137.1| PREDICTED: poly(A) polymerase-like [Brachypodium distachyon]
Length = 553
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/461 (50%), Positives = 302/461 (65%), Gaps = 17/461 (3%)
Query: 48 VDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDV 107
+D S+W+ D+R +GI IP+ W VL++LK +GF+AYLVGGCVRDLLL+R PKDFDV
Sbjct: 59 IDTSSWRFFDARAVGIPTGSIPRNCWTVLQMLKRKGFEAYLVGGCVRDLLLKRAPKDFDV 118
Query: 108 ITTANLKQIRRQ-FHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIP 166
ITTA+LKQI++ F R IIGRRFPIC+V + GS EVSSF T +G E V S+
Sbjct: 119 ITTASLKQIKKLVFKRCMIIGRRFPICQVKMHGSTFEVSSFSTNGTQVKGSENVNFSEEL 178
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
G DE D++ W+NS+ RDFTINSLFF+PF ++YDY NG++D+R K+ +IPA++SF E
Sbjct: 179 DGYDEGDIIPWKNSLKRDFTINSLFFNPFNYRVYDYVNGVNDVRKNKVCAVIPAHVSFEE 238
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D ARILRGLRIAARLG F + TA+ LSSSI +DKSR+ ME+ YMLS+GAAESSI
Sbjct: 239 DPARILRGLRIAARLGFQFSSETSTAIRDLSSSIINIDKSRLAMEMKYMLSHGAAESSIR 298
Query: 287 LLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
LL +Y LL ILLP AAYL Q +++ +MLM+L NLDKL S DRP +LW+ LL
Sbjct: 299 LLGKYGLLDILLPLQAAYLSHQIKGQSSDRNLMLMKLLANLDKLTSADRPCHCSLWLALL 358
Query: 347 SFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQ 406
+FH ALV+ PQDA V+ FAS++Y G W +KF + PV FVPE S + +
Sbjct: 359 AFHSALVNSPQDAQVIKAFASLMYFGTWDSTIKFLKQDTGAPVTFVPEALQPSGTKLN-N 417
Query: 407 LAVKVTELALSVQDCVNDLT-------------KAS--SGYVFVSKKIERNVQQIFDVLV 451
L K + LA V V+ LT KAS SG VFVS K + IF L
Sbjct: 418 LMEKTSHLASLVNCSVDTLTCLDALQQSLARYPKASQFSGLVFVSNKERSRILGIFKGLD 477
Query: 452 NSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTIS 492
+ + Y+ + H I+Y +L G+ E RFVLGK+I+ T+S
Sbjct: 478 SDLSLYDGRRGMHGINYKLLDDGHTGEVRFVLGKVIMDTMS 518
>gi|115450525|ref|NP_001048863.1| Os03g0131400 [Oryza sativa Japonica Group]
gi|108706021|gb|ABF93816.1| polyA polymerase family protein, expressed [Oryza sativa Japonica
Group]
gi|113547334|dbj|BAF10777.1| Os03g0131400 [Oryza sativa Japonica Group]
gi|222624145|gb|EEE58277.1| hypothetical protein OsJ_09295 [Oryza sativa Japonica Group]
Length = 558
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 238/494 (48%), Positives = 315/494 (63%), Gaps = 23/494 (4%)
Query: 48 VDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDV 107
VD S+W+ DSR +GITR IP+ +W VL +LK +GF AYLVGGCVRDLLL+R PKDFDV
Sbjct: 61 VDSSSWRYFDSRVVGITRGDIPRHAWTVLHMLKRKGFAAYLVGGCVRDLLLKRAPKDFDV 120
Query: 108 ITTANLKQIRRQ-FHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIP 166
ITTA+L+QI++ F R IIG+RFPIC+V++ G+ IEVSSF T A H +G + + S+
Sbjct: 121 ITTASLQQIKKMVFQRCIIIGKRFPICQVNMYGTKIEVSSFSTNANHVKGSKNIGCSEEF 180
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
DE D++ W+NS+ RDFTINSLFF+PF KIYDY NG+ D+ K+ T+IPA +SF E
Sbjct: 181 KRYDEGDILLWQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDISKNKVSTVIPARVSFKE 240
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D ARILRGLRIAARLG F + A+ LS SI +DK+R+MMELNY+LSYGAA SS+
Sbjct: 241 DPARILRGLRIAARLGFEFSSETSAAIRELSLSITDIDKARLMMELNYLLSYGAAASSLR 300
Query: 287 LLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
LLR+Y LL LLPF AAY+ Q + + +MLM+L NLDKL+S D+P LW+ LL
Sbjct: 301 LLRKYGLLDFLLPFQAAYMSDQMKDKSNDTDLMLMKLLANLDKLLSADQPCPSCLWLALL 360
Query: 347 SFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQ 406
+FH ALV+ P DA V+ FA+++Y G W+ V F P F+PE G S + E
Sbjct: 361 TFHSALVNSPHDAQVIRAFAALMYFGSWEGAVNFLNQDIGAPAPFIPETLGPSRSKL-EN 419
Query: 407 LAVKVTELALSVQDCVNDLT-------------KAS--SGYVFVSKKIERNVQQIFDVLV 451
L + + LA V+ V+ LT KAS SG V VS + V +IF+ L
Sbjct: 420 LMEQTSHLASLVKSSVDTLTSIDALQQSLAKYSKASQVSGLVLVSSRERERVLRIFEGLD 479
Query: 452 NSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVL 511
+ SY + IDY +L G+ E RFVLG++I+ T+S L E D+ L
Sbjct: 480 TDLTSYEGTRGMQEIDYKLLKDGHPGEVRFVLGQVIMDTMSEELPRVSTEYDQ------L 533
Query: 512 DKDSVENYLAKKNR 525
+ ++ E+ LA +R
Sbjct: 534 NMEASEDDLADGSR 547
>gi|218192024|gb|EEC74451.1| hypothetical protein OsI_09859 [Oryza sativa Indica Group]
Length = 558
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 239/494 (48%), Positives = 314/494 (63%), Gaps = 23/494 (4%)
Query: 48 VDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDV 107
VD S+W+ DSR +GITR IP+ +W VL LK +GF AYLVGGCVRDLLL+R PKDFDV
Sbjct: 61 VDSSSWRYFDSRVVGITRGDIPRHAWTVLHRLKRKGFAAYLVGGCVRDLLLKRAPKDFDV 120
Query: 108 ITTANLKQIRRQ-FHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIP 166
ITTA+L+QI++ F R IIG+RFPIC+V++ G+ IEVSSF T A H +G + + S+
Sbjct: 121 ITTASLQQIKKMVFQRCIIIGKRFPICQVNMYGTKIEVSSFSTNANHVKGSKNIGCSEEF 180
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
DE D++ W+NS+ RDFTINSLFF+PF KIYDY NG+ D+ K+ T+IPA +SF E
Sbjct: 181 KRYDEGDILLWQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDISKNKVSTVIPARVSFKE 240
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D ARILRGLRIAARLG F + A+ LS SI +DK+R+MMELNY+LSYGAA SS+
Sbjct: 241 DPARILRGLRIAARLGFEFSSETSAAIRELSLSITDIDKARLMMELNYLLSYGAAASSLR 300
Query: 287 LLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
LLR+Y LL LLPF AAY+ Q + + +MLM+L NLDKL+S DRP LW+ LL
Sbjct: 301 LLRKYGLLDFLLPFQAAYMSDQMKDKSNDTDLMLMKLLANLDKLLSADRPCPSCLWLALL 360
Query: 347 SFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQ 406
+FH ALV+ P DA V+ FA+++Y G W+ V F P F+PE G S + E
Sbjct: 361 TFHSALVNSPHDAQVIRAFAALMYFGSWEGAVNFLNQDIGAPAPFIPETLGPSRSKL-EN 419
Query: 407 LAVKVTELALSVQDCVNDLT-------------KAS--SGYVFVSKKIERNVQQIFDVLV 451
L + + LA V+ V+ LT KAS SG V VS + V +IF+ L
Sbjct: 420 LMEQTSHLASLVKSSVDTLTSIDALQQSLAKYSKASQVSGLVLVSSRERERVLRIFEGLD 479
Query: 452 NSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVL 511
+ SY + IDY +L G+ E RFVLG++I+ T+S L E D+ L
Sbjct: 480 TDLTSYEGTRGMQEIDYKLLKDGHPGEVRFVLGQVIMDTMSEELPRVSTEYDQ------L 533
Query: 512 DKDSVENYLAKKNR 525
+ ++ E+ LA +R
Sbjct: 534 NMEASEDDLADGSR 547
>gi|414864625|tpg|DAA43182.1| TPA: hypothetical protein ZEAMMB73_451476 [Zea mays]
Length = 556
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/459 (48%), Positives = 298/459 (64%), Gaps = 15/459 (3%)
Query: 48 VDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDV 107
VD S+WK DSR +GI I +W VLK L+ +GFQAYLVGGCVRDLLL+RVPKDFDV
Sbjct: 68 VDPSSWKHFDSRAVGIKPGAIHTDAWAVLKKLRREGFQAYLVGGCVRDLLLKRVPKDFDV 127
Query: 108 ITTANLKQIRRQ-FHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIP 166
ITTA+L+Q+++ F RS I+G+RFPIC + ++ SVIE+SSF TVA +G E V
Sbjct: 128 ITTASLEQLKKNIFRRSRIVGKRFPICLLKMRDSVIEISSFRTVANYGNRSEVVDYVAEL 187
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
G D D++RW++S+ RDFTIN LFF+P KIYDY NG+ D+R K+ T+IPA++SF E
Sbjct: 188 NGSDVRDILRWKDSMRRDFTINGLFFNPMNCKIYDYVNGVRDMRKNKVCTVIPAHISFME 247
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D ARILRG RIAARLG F + A+ SSSI +DK+R+MME+NY++SYGAA S+
Sbjct: 248 DPARILRGFRIAARLGFQFSSETSNAIRDFSSSINNIDKARLMMEMNYIMSYGAAAPSVR 307
Query: 287 LLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
LLR+Y LL ILLPF +AYL +Q +++ +MLM+L NLD+L+S DRP +LW+ LL
Sbjct: 308 LLRKYGLLDILLPFQSAYLSEQMKGGSSDRHLMLMKLLSNLDRLLSADRPCHSSLWLALL 367
Query: 347 SFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESD-- 404
+FH LV PQD V+ FA+VLY G W+ VKF R+ V F PE G S + D
Sbjct: 368 AFHSTLVIYPQDTLVIRAFAAVLYFGTWETTVKFLREEVGAEVPFAPETMGPSRTKLDCL 427
Query: 405 -EQLA--VKVTELALSVQDCVNDLTKA---------SSGYVFVSKKIERNVQQIFDVLVN 452
EQ + + ++ + C +DL ++ SG V S + + +F+ L +
Sbjct: 428 KEQTSHLASLVNSSVDILTCPHDLEQSLARFSEPLQFSGVVVASNNDRKKLSAVFEGLAS 487
Query: 453 SIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
+ SY+ + IDY L G+L E RFVLGK+I+ T+
Sbjct: 488 DLHSYDGRRGMRGIDYSSLKLGDLAEVRFVLGKVIMDTM 526
>gi|297744919|emb|CBI38416.3| unnamed protein product [Vitis vinifera]
Length = 262
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 189/261 (72%), Positives = 223/261 (85%)
Query: 50 VSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVIT 109
+S WK +DSR GITR+MI PSWVVLK+L+ +GF+AYLVGGCVRDL+L + PKDFDVIT
Sbjct: 1 MSKWKKLDSRTFGITRSMISSPSWVVLKLLQREGFEAYLVGGCVRDLILNKTPKDFDVIT 60
Query: 110 TANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGC 169
TA LKQI+++F R++I+GRRFPICRVH+KGSVIEVSSFETVAKHGE KE V SQ+P GC
Sbjct: 61 TAKLKQIKKRFRRAQIVGRRFPICRVHVKGSVIEVSSFETVAKHGEEKEKVSFSQMPSGC 120
Query: 170 DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCA 229
DE D RWRN +HRDFTINSLFFDPF+NKIYDYANG+ DLR LKLRTLIPA LSF EDCA
Sbjct: 121 DESDFNRWRNCMHRDFTINSLFFDPFVNKIYDYANGMKDLRSLKLRTLIPAQLSFKEDCA 180
Query: 230 RILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
R+LRGLRIAARLGLSF ++ +TA+ SL+SS++ LDKSRIM+ELNYMLSYG+A+ S+CLL
Sbjct: 181 RMLRGLRIAARLGLSFSRETETAIRSLASSVKSLDKSRIMLELNYMLSYGSAKPSLCLLW 240
Query: 290 RYNLLKILLPFHAAYLDQQAG 310
R+NLL ILLPFH + G
Sbjct: 241 RFNLLDILLPFHVGSIPCSTG 261
>gi|414864626|tpg|DAA43183.1| TPA: hypothetical protein ZEAMMB73_451476 [Zea mays]
Length = 477
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/380 (52%), Positives = 260/380 (68%), Gaps = 2/380 (0%)
Query: 48 VDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDV 107
VD S+WK DSR +GI I +W VLK L+ +GFQAYLVGGCVRDLLL+RVPKDFDV
Sbjct: 68 VDPSSWKHFDSRAVGIKPGAIHTDAWAVLKKLRREGFQAYLVGGCVRDLLLKRVPKDFDV 127
Query: 108 ITTANLKQIRRQ-FHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIP 166
ITTA+L+Q+++ F RS I+G+RFPIC + ++ SVIE+SSF TVA +G E V
Sbjct: 128 ITTASLEQLKKNIFRRSRIVGKRFPICLLKMRDSVIEISSFRTVANYGNRSEVVDYVAEL 187
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
G D D++RW++S+ RDFTIN LFF+P KIYDY NG+ D+R K+ T+IPA++SF E
Sbjct: 188 NGSDVRDILRWKDSMRRDFTINGLFFNPMNCKIYDYVNGVRDMRKNKVCTVIPAHISFME 247
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D ARILRG RIAARLG F + A+ SSSI +DK+R+MME+NY++SYGAA S+
Sbjct: 248 DPARILRGFRIAARLGFQFSSETSNAIRDFSSSINNIDKARLMMEMNYIMSYGAAAPSVR 307
Query: 287 LLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
LLR+Y LL ILLPF +AYL +Q +++ +MLM+L NLD+L+S DRP +LW+ LL
Sbjct: 308 LLRKYGLLDILLPFQSAYLSEQMKGGSSDRHLMLMKLLSNLDRLLSADRPCHSSLWLALL 367
Query: 347 SFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQ 406
+FH LV PQD V+ FA+VLY G W+ VKF R+ V F PE G S + D
Sbjct: 368 AFHSTLVIYPQDTLVIRAFAAVLYFGTWETTVKFLREEVGAEVPFAPETMGPSRTKLD-C 426
Query: 407 LAVKVTELALSVQDCVNDLT 426
L + + LA V V+ LT
Sbjct: 427 LKEQTSHLASLVNSSVDILT 446
>gi|225425222|ref|XP_002266814.1| PREDICTED: CCA-adding enzyme [Vitis vinifera]
gi|296088167|emb|CBI35659.3| unnamed protein product [Vitis vinifera]
Length = 537
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/462 (43%), Positives = 291/462 (62%), Gaps = 16/462 (3%)
Query: 45 NQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKD 104
N WK ++S++LGI +MI +P+ VL LK +G++ YLVGGCVRDL+L+R PKD
Sbjct: 61 NGASKAPEWKKLNSKDLGIRTSMIAKPTRYVLNGLKKKGYEVYLVGGCVRDLILKRTPKD 120
Query: 105 FDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQ 164
FD+IT+A LK++ R F R E++G+RFPIC VH+ +++EVSSF T K K +L +
Sbjct: 121 FDIITSAELKEVLRAFPRCEVVGKRFPICHVHVNDTIVEVSSFSTSGKRTGRKLDYILRR 180
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
P CD+ D +RWRN + RDFTIN L FDP+ +YDY G+ D++ K+RT+IPA +SF
Sbjct: 181 PP-DCDDHDYIRWRNCLQRDFTINGLMFDPYTKIVYDYMGGMQDIKKAKVRTVIPANISF 239
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
EDCARILRG+RIAARLG F KDI ++ LS S+ RLDK RI+ME+NYML+YG+AE+S
Sbjct: 240 VEDCARILRGVRIAARLGFRFTKDIAHSVRELSCSVLRLDKGRILMEMNYMLAYGSAEAS 299
Query: 285 ICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVG 344
+ LL ++ LL+ILLP AAYL Q + + ML+ LF NLD+LV+ DRP +LW+G
Sbjct: 300 LRLLWKFGLLEILLPIQAAYLVSQGFRRRDQRSNMLLSLFSNLDRLVAPDRPCHNSLWIG 359
Query: 345 LLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEIES 403
+L+FH+ALV P+ VV F+ +++ G E V+ AR ++ + E+ +++S
Sbjct: 360 MLAFHKALVDQPRHPMVVAAFSLAVHNGGSLSEAVEIARRISQPHDQSFSELLEPQDLDS 419
Query: 404 DEQLAVKVTELALSVQDCVNDLT------KASSGY--------VFVSKKIERNVQQIFDV 449
DE L ++ +LA SV+ + +T +A S Y VF+S +IF
Sbjct: 420 DESLIDEIMDLAASVKSALMKMTDEHFVSQAMSKYPRAPYSDLVFISLASFLRASKIFQC 479
Query: 450 LVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
+ E K+ IDY+ L G+L E R V +I+ T+
Sbjct: 480 VQGGAEKGFVPKQGSRIDYEFLALGSLREVRHVFARIVFDTV 521
>gi|224075475|ref|XP_002304649.1| predicted protein [Populus trichocarpa]
gi|222842081|gb|EEE79628.1| predicted protein [Populus trichocarpa]
Length = 525
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/463 (43%), Positives = 285/463 (61%), Gaps = 17/463 (3%)
Query: 45 NQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKD 104
N E WK +D+ LGI+ ++I +P+ VVL LK +G++ YLVGGCVRDL+L+R+PKD
Sbjct: 48 NGERKAPEWKKLDAEELGISNSIISRPTRVVLNGLKKKGYEVYLVGGCVRDLILKRIPKD 107
Query: 105 FDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQ 164
FDVIT+A LKQ+R+ FHR EI+G+RFPIC VH+ +++EVSSF T +GK + +
Sbjct: 108 FDVITSAELKQVRKAFHRCEIVGKRFPICHVHVDDAIVEVSSFSTSQLKSDGKFNGNVRK 167
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
P GC E D +RWRN + RDFTIN L DP+ N +YDY GI+D++ K+RT+IPA LSF
Sbjct: 168 -PRGCSERDFIRWRNCLQRDFTINGLMLDPYANIVYDYMGGITDIKKTKVRTVIPANLSF 226
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED RILR +RIAARL F +D+ ++ LS S+ RLDK RI++ELNYM +YG+AE+S
Sbjct: 227 VEDSGRILRAIRIAARLHFGFTRDLALSLKELSHSVLRLDKGRILLELNYMFAYGSAEAS 286
Query: 285 ICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVG 344
+ L+ R+ LL+ILLP A+Y Q + E ML+ LF NLD+LV+ DRP +LW+G
Sbjct: 287 LRLMWRFGLLEILLPIQASYFVSQGFRRRDERSNMLLSLFSNLDRLVAPDRPCHSSLWLG 346
Query: 345 LLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEIES 403
+ +FH+ALV PQD VV F+ ++ G E V+ AR ++ PE+ +S
Sbjct: 347 IFAFHKALVDQPQDPLVVTAFSLAVHSGGSLLESVEIARRISQPYQSSFPELLEAQNPDS 406
Query: 404 DEQLAVKVTELALSVQDCVNDLTKA--------------SSGYVFVSKKIERNVQQIFD- 448
+ L K A V+ + ++T SS VF+ + V +IF+
Sbjct: 407 NNALVHKTINFAALVKTALCNMTDGCYVSKAMAKYPKAPSSDLVFIPMALFLRVSKIFEC 466
Query: 449 VLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
V +E+ ++ IDY+ L G+L E R V +I+ T+
Sbjct: 467 VRRRGMETRFVRRQGRKIDYESLAMGSLEEVRHVFARIVFDTV 509
>gi|297845758|ref|XP_002890760.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297336602|gb|EFH67019.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 534
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/458 (44%), Positives = 287/458 (62%), Gaps = 21/458 (4%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK +D+ GI R+MIP + +VL LK +GFQ YLVGGCVRDL+L R+PKDFDVITTA
Sbjct: 75 WKKLDADEFGIQRSMIPDSTRMVLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAE 134
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEI 172
LK++R+ F R +I+GRRFPIC V++ +IEVSSF T A+ G+ L + P GCDE
Sbjct: 135 LKEVRKVFPRCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKAPSKNL--RKPAGCDER 192
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +RW+N + RDFT+N L FD N +YDY G+ D+R K+RT+ A LSF ED ARIL
Sbjct: 193 DYIRWKNCLQRDFTVNGLMFDLSENVVYDYIGGVEDIRNSKVRTVSAAKLSFVEDTARIL 252
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +RIAARLG S KD+ ++ LSSS+ RLD SRI ME+NYML+YG+AE+S+ LL R+
Sbjct: 253 RAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLWRFG 312
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
L++ILLP A+YL Q + ML+ LF NLD+LV+ DRP + LW+G+L+FH+AL
Sbjct: 313 LMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPCNEFLWIGILAFHKAL 372
Query: 353 VSDPQDAFVVWVFASVLYHG-KWKEGVKFARDRAKEPVKFVPEISGFSE--IESDEQLAV 409
V P+D VV F +Y E + AR +K+ E+SG + +S+ +L+
Sbjct: 373 VDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELSGHEKDSADSESKLSQ 432
Query: 410 KVTELALSVQDC---VND---LTKASSGY--------VFVSKKIERNVQQIFDVLV--NS 453
+V +LA S++ +ND + A S Y VF+S+ + V+++F + +
Sbjct: 433 QVIKLAESIRSAARKLNDRDYIANAMSKYPQAPGSDMVFLSRPMLERVEKMFGSVRRKRN 492
Query: 454 IESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
E+ + I+Y L G+ ETR V +I+ TI
Sbjct: 493 QETEDVPSLERRINYKSLALGDFHETRRVFARIVFDTI 530
>gi|449468890|ref|XP_004152154.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus]
Length = 539
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 198/454 (43%), Positives = 285/454 (62%), Gaps = 19/454 (4%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK + +LGI +MI +P+ +VL L+ QG++ YLVGGCVRDL+L+R+PKDFDVIT+A
Sbjct: 73 WKALSCEDLGIDSSMISKPTRLVLNGLRKQGYEVYLVGGCVRDLILKRIPKDFDVITSAQ 132
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEI 172
LK++RR F + ++G+RFPIC V++ G+++EVSSF T ++ G + P E
Sbjct: 133 LKEVRRIFSQCLVVGKRFPICHVNVLGTIVEVSSFST-SRSRNGFNNYI--NKPSNLSEP 189
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +RW N RDFTINSL +DP+ +YDY + D+R K+RT+ PA LSFTEDCARIL
Sbjct: 190 DYIRWENCSQRDFTINSLMYDPYKKVVYDYLGAMEDIRKSKVRTVKPANLSFTEDCARIL 249
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
RG+R+AARL F KDI ++ LS S+ +LDK R++ME+NYML++G+AE+S+ LL R+
Sbjct: 250 RGVRLAARLEFRFSKDIALSIKELSCSVLKLDKGRLLMEMNYMLAFGSAEASLRLLWRFG 309
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
LL+ILLP A+Y Q + ML+ LF NLDK V+ +RP +LW+ LL+FH+AL
Sbjct: 310 LLEILLPIQASYFVSQGFRRRDARSNMLLILFSNLDKFVAPNRPCHSSLWIALLAFHKAL 369
Query: 353 VSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKV 411
V PQD VV F+ ++ G E V+ A++ ++ V F EI + ESD L +V
Sbjct: 370 VDQPQDPVVVAAFSLAIHSGGSLYEAVEIAQNISQPHVSF-HEIVESNHKESDYSLVEQV 428
Query: 412 TELALSVQDCVNDLTKAS--------------SGYVFVSKKIERNVQQIFDVLVNSIESY 457
+LA SV + +T + S VF+S+ + +V +IFD + E+
Sbjct: 429 IDLADSVNSVLWKMTNSQYVSRAMIKYPQAPWSDLVFISQSLSISVCKIFDCVRRGNETG 488
Query: 458 NSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
+ KRS I++D L GNL E R V +I+ T+
Sbjct: 489 SVPKRSRRINHDSLAMGNLSEVRHVFARIVFDTV 522
>gi|449484884|ref|XP_004157007.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus]
Length = 532
Score = 370 bits (950), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 198/454 (43%), Positives = 285/454 (62%), Gaps = 19/454 (4%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK + +LGI +MI +P+ +VL L+ QG++ YLVGGCVRDL+L+R+PKDFDVIT+A
Sbjct: 66 WKALSCEDLGIDSSMISKPTRLVLNGLRKQGYEVYLVGGCVRDLILKRIPKDFDVITSAQ 125
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEI 172
LK++RR F + ++G+RFPIC V++ G+++EVSSF T ++ G + P E
Sbjct: 126 LKEVRRIFSQCLVVGKRFPICHVNVLGTIVEVSSFST-SRSRNGFNNYI--NKPSNLSEP 182
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +RW N RDFTINSL +DP+ +YDY + D+R K+RT+ PA LSFTEDCARIL
Sbjct: 183 DYIRWENCSQRDFTINSLMYDPYKKVVYDYLGAMEDIRKSKVRTVKPANLSFTEDCARIL 242
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
RG+R+AARL F KDI ++ LS S+ +LDK R++ME+NYML++G+AE+S+ LL R+
Sbjct: 243 RGVRLAARLEFRFSKDIALSIKELSCSVLKLDKGRLLMEMNYMLAFGSAEASLRLLWRFG 302
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
LL+ILLP A+Y Q + ML+ LF NLDK V+ +RP +LW+ LL+FH+AL
Sbjct: 303 LLEILLPIQASYFVSQGFRRRDARSNMLLILFSNLDKFVAPNRPCHSSLWIALLAFHKAL 362
Query: 353 VSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKV 411
V PQD VV F+ ++ G E V+ A++ ++ V F EI + ESD L +V
Sbjct: 363 VDQPQDPVVVAAFSLAIHSGGSLYEAVEIAQNISQPHVSF-HEIVESNHKESDYSLVEQV 421
Query: 412 TELALSVQDCVNDLTKAS--------------SGYVFVSKKIERNVQQIFDVLVNSIESY 457
+LA SV + +T + S VF+S+ + +V +IFD + E+
Sbjct: 422 IDLADSVNSVLWKMTNSQYVSRAMIKYPQAPWSDLVFISQSLSISVCKIFDCVRRGNETG 481
Query: 458 NSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
+ KRS I++D L GNL E R V +I+ T+
Sbjct: 482 SVPKRSRRINHDSLAMGNLSEVRHVFARIVFDTV 515
>gi|42571667|ref|NP_973924.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
gi|194272240|gb|ACF37205.1| At1g28090 [Arabidopsis thaliana]
gi|222424128|dbj|BAH20023.1| AT1G28090 [Arabidopsis thaliana]
gi|332192790|gb|AEE30911.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
Length = 505
Score = 368 bits (945), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 202/462 (43%), Positives = 282/462 (61%), Gaps = 29/462 (6%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK +D+ GI R+MIP + +VL LK +GFQ YLVGGCVRDL+L R+PKDFDVITTA
Sbjct: 46 WKKLDANEFGIQRSMIPDSTRMVLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAE 105
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEI 172
LK++R+ F +I+GRRFPIC V++ +IEVSSF T A+ G+ + P GCDE
Sbjct: 106 LKEVRKVFPGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKAPNKSF--RRPAGCDER 163
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +RW+N + RDFT+N L FDP N +YDY G+ DLR K+RT+ A LSF ED ARIL
Sbjct: 164 DYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTARIL 223
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +RIAARLG S KD+ ++ LSSS+ RLD SRI ME+NYML+YG+AE+S+ LL R+
Sbjct: 224 RAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLWRFG 283
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
L++ILLP A+YL Q + ML+ LF NLD+LV+ DRP LW+G+L+FH+AL
Sbjct: 284 LMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPCSEFLWIGILAFHKAL 343
Query: 353 VSDPQDAFVVWVFASVLYHG-KWKEGVKFARDRAKEPVKFVPEISGFSE--IESDEQLAV 409
V P+D VV F +Y E + AR +K+ E+S + +S+ +++
Sbjct: 344 VDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELSSPEKDTADSESKISQ 403
Query: 410 KVTELALSVQDCVNDL------TKASSGY--------VFVSKKIERNVQQIFDVLVNSIE 455
+V +LA S++ L A S Y VF+S+ + V+++F ++
Sbjct: 404 QVIKLAESIRSAARKLNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMF----GNVR 459
Query: 456 SYNSGKRSHI------IDYDMLGKGNLVETRFVLGKIILKTI 491
+ +R + I+Y L G+ ETR V +I+ TI
Sbjct: 460 RKGNQERDDVPSLERRINYKSLALGDFHETRRVFARIVFDTI 501
>gi|145324048|ref|NP_001077613.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
gi|332192791|gb|AEE30912.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
Length = 478
Score = 368 bits (945), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 202/462 (43%), Positives = 282/462 (61%), Gaps = 29/462 (6%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK +D+ GI R+MIP + +VL LK +GFQ YLVGGCVRDL+L R+PKDFDVITTA
Sbjct: 19 WKKLDANEFGIQRSMIPDSTRMVLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAE 78
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEI 172
LK++R+ F +I+GRRFPIC V++ +IEVSSF T A+ G+ + P GCDE
Sbjct: 79 LKEVRKVFPGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKAPNKSF--RRPAGCDER 136
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +RW+N + RDFT+N L FDP N +YDY G+ DLR K+RT+ A LSF ED ARIL
Sbjct: 137 DYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTARIL 196
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +RIAARLG S KD+ ++ LSSS+ RLD SRI ME+NYML+YG+AE+S+ LL R+
Sbjct: 197 RAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLWRFG 256
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
L++ILLP A+YL Q + ML+ LF NLD+LV+ DRP LW+G+L+FH+AL
Sbjct: 257 LMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPCSEFLWIGILAFHKAL 316
Query: 353 VSDPQDAFVVWVFASVLYHG-KWKEGVKFARDRAKEPVKFVPEISGFSE--IESDEQLAV 409
V P+D VV F +Y E + AR +K+ E+S + +S+ +++
Sbjct: 317 VDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELSSPEKDTADSESKISQ 376
Query: 410 KVTELALSVQDCVNDL------TKASSGY--------VFVSKKIERNVQQIFDVLVNSIE 455
+V +LA S++ L A S Y VF+S+ + V+++F ++
Sbjct: 377 QVIKLAESIRSAARKLNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMF----GNVR 432
Query: 456 SYNSGKRSHI------IDYDMLGKGNLVETRFVLGKIILKTI 491
+ +R + I+Y L G+ ETR V +I+ TI
Sbjct: 433 RKGNQERDDVPSLERRINYKSLALGDFHETRRVFARIVFDTI 474
>gi|42562367|ref|NP_174130.2| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
gi|332192789|gb|AEE30910.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
Length = 541
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 202/462 (43%), Positives = 282/462 (61%), Gaps = 29/462 (6%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK +D+ GI R+MIP + +VL LK +GFQ YLVGGCVRDL+L R+PKDFDVITTA
Sbjct: 82 WKKLDANEFGIQRSMIPDSTRMVLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAE 141
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEI 172
LK++R+ F +I+GRRFPIC V++ +IEVSSF T A+ G+ + P GCDE
Sbjct: 142 LKEVRKVFPGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKAPNKSF--RRPAGCDER 199
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +RW+N + RDFT+N L FDP N +YDY G+ DLR K+RT+ A LSF ED ARIL
Sbjct: 200 DYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTARIL 259
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +RIAARLG S KD+ ++ LSSS+ RLD SRI ME+NYML+YG+AE+S+ LL R+
Sbjct: 260 RAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLWRFG 319
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
L++ILLP A+YL Q + ML+ LF NLD+LV+ DRP LW+G+L+FH+AL
Sbjct: 320 LMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPCSEFLWIGILAFHKAL 379
Query: 353 VSDPQDAFVVWVFASVLYHG-KWKEGVKFARDRAKEPVKFVPEISGFSE--IESDEQLAV 409
V P+D VV F +Y E + AR +K+ E+S + +S+ +++
Sbjct: 380 VDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELSSPEKDTADSESKISQ 439
Query: 410 KVTELALSVQDCVNDL------TKASSGY--------VFVSKKIERNVQQIFDVLVNSIE 455
+V +LA S++ L A S Y VF+S+ + V+++F ++
Sbjct: 440 QVIKLAESIRSAARKLNNRDYIANAMSKYPQAPGSDMVFLSRLMLERVEKMF----GNVR 495
Query: 456 SYNSGKRSHI------IDYDMLGKGNLVETRFVLGKIILKTI 491
+ +R + I+Y L G+ ETR V +I+ TI
Sbjct: 496 RKGNQERDDVPSLERRINYKSLALGDFHETRRVFARIVFDTI 537
>gi|26449498|dbj|BAC41875.1| putative poly(A) polymerase [Arabidopsis thaliana]
Length = 571
Score = 362 bits (928), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 190/367 (51%), Positives = 241/367 (65%), Gaps = 23/367 (6%)
Query: 168 GCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
G D D RWRNS+ RDFTINSLF++PF IYDYANG+ DL LKLRTL+PA+LSF ED
Sbjct: 4 GWDIKDCKRWRNSLQRDFTINSLFYNPFDFTIYDYANGMEDLTDLKLRTLVPAHLSFKED 63
Query: 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
CARILRGLRIAARLGLS KD+ TA+ SS+ LD+ R++ME+NYML+YGAA SI L
Sbjct: 64 CARILRGLRIAARLGLSLSKDVKTAIPEFVSSVANLDQFRLIMEMNYMLAYGAAAPSILL 123
Query: 288 LRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLS 347
L ++ LL +LLPF AAYLD QA K + + +ML+RLF N+DKLVSCD+PAD LW+ +L+
Sbjct: 124 LMKFKLLHVLLPFQAAYLD-QASKTSLSSSLMLVRLFSNMDKLVSCDQPADPKLWIAVLA 182
Query: 348 FHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQL 407
FH ALV +PQ+A VV FA++LYHG W + V+FAR+ + + PE+S S SDE L
Sbjct: 183 FHIALVRNPQEAIVVRAFAALLYHGNWSKAVEFAREHGTSVIGYAPEVSKSSRKRSDEDL 242
Query: 408 AVKVTELALSVQDCVNDLTKAS--------------SGYVFVSKKIERNVQQIFDVLVNS 453
A V+E ++D LT SG VF+ KK R+V + F + ++
Sbjct: 243 AEAVSEFTCLLKDTQYVLTDKEALREALYLYPDFKFSGLVFIPKKKGRDVAEGF-MRLSD 301
Query: 454 IESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLVAGEEEIDEEEMPEVLDK 513
+ESY S K IDY +LGKGN E RFVLGKIIL TI+ G V E + V K
Sbjct: 302 VESYESQKEGFSIDYVLLGKGNPCEVRFVLGKIILDTITEGTVI-------EPLNSVKKK 354
Query: 514 DSVENYL 520
S N++
Sbjct: 355 QSTRNHI 361
>gi|255540089|ref|XP_002511109.1| poly(A) polymerase, putative [Ricinus communis]
gi|223550224|gb|EEF51711.1| poly(A) polymerase, putative [Ricinus communis]
Length = 524
Score = 352 bits (904), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 189/454 (41%), Positives = 278/454 (61%), Gaps = 17/454 (3%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK ++S+ LGIT +MI P+ +L LK +G++ YLVGGCVRDL+L+R+PKDFD+IT+A
Sbjct: 67 WKKLNSKELGITNSMIASPTRKILNGLKQRGYEVYLVGGCVRDLILKRIPKDFDIITSAE 126
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEI 172
L+++ R F R EI+GRRFPIC V++ +V+EVSSF T + G + +Q P CDE
Sbjct: 127 LREVARAFSRCEIVGRRFPICHVYVGDTVVEVSSFSTTGQK-FGGDWNYDTQSPIDCDEK 185
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +RWRN RDFTIN L FDP+ +YDY G+ D+R K+RT+ PA SF EDCARIL
Sbjct: 186 DYMRWRNCSQRDFTINGLMFDPYEKIVYDYIGGLEDIRKAKVRTVTPASNSFQEDCARIL 245
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +RIAARLG F ++ + + SI RLDK R++ME+NYML+YG++E+S+ LL ++
Sbjct: 246 RAVRIAARLGFRFSRETAHFLKHFAHSILRLDKGRLLMEMNYMLAYGSSEASLRLLWKFG 305
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
LL+ILLP AAY K + ML+ L N+DKL++ DRP LW+G+L+FH+AL
Sbjct: 306 LLEILLPIQAAYFVHCGFKRRDKRSNMLLSLLSNMDKLLAPDRPCHSCLWIGILAFHKAL 365
Query: 353 VSDPQDAFVVWVFASVLYHGK-WKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKV 411
P+D VV F +++G E V A+ K E+ ++++D QL +V
Sbjct: 366 SEQPRDPLVVAAFCLAVHNGGDMSEAVNIAKRIDKPHDMSFHELCKPGDMDTD-QLVDEV 424
Query: 412 TELALSVQDCVNDLT------KASSGY--------VFVSKKIERNVQQIFDVLVNSIESY 457
+LA S++ ++ +T +A + Y VF+S + V ++F+ + E
Sbjct: 425 MDLAQSIKRVLSMMTDEHYVSQAMAEYPQAPYSDLVFISFALYLRVGRVFECVRQGKEKG 484
Query: 458 NSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
K+ I+Y +L G+L E R +I+ T+
Sbjct: 485 FVPKQGGKINYQLLALGSLKEVRHTFARIVFDTV 518
>gi|224119782|ref|XP_002318161.1| predicted protein [Populus trichocarpa]
gi|222858834|gb|EEE96381.1| predicted protein [Populus trichocarpa]
Length = 515
Score = 351 bits (901), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 194/461 (42%), Positives = 273/461 (59%), Gaps = 31/461 (6%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK + S+ LG++ ++I P+ VL LK G++ YLVGGCVRDL+L+R+PKDFD+IT+A
Sbjct: 60 WKKLSSKELGLSNSLISMPTKKVLNGLKKNGYEVYLVGGCVRDLILKRIPKDFDIITSAE 119
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQI--PYGCD 170
LK++ R F EI+G+ FPIC VH+ +++EVSSF T G + L + I P CD
Sbjct: 120 LKEVVRTFSHCEIVGKWFPICHVHVGDTIVEVSSFSTT---GRKFKVDLRNDIICPIDCD 176
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D VRW+N + RDFTIN L FDP+ +YDY G+ D++ K+RT+IPA +SF EDCAR
Sbjct: 177 EKDYVRWKNCLQRDFTINGLMFDPYKRIVYDYMGGLEDIKKAKVRTVIPAGISFQEDCAR 236
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
ILR +RIAARLG F ++ + +LS + RLDK RIMME+NYML+YG+AE+S+ +L +
Sbjct: 237 ILRAVRIAARLGFRFTRETAHFVKNLSRLLLRLDKPRIMMEMNYMLAYGSAEASLRILWK 296
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQ 350
+ LL++LLP AAY + K + ML+ LF NLDKL++ DRP +LWVG+L+FH+
Sbjct: 297 FGLLELLLPIQAAYFVRDGFKRRDKRSNMLLCLFSNLDKLLAPDRPCHSSLWVGILAFHK 356
Query: 351 ALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAV 409
AL P+D VV F +++ G GV AR K P F E+ + L
Sbjct: 357 ALADQPRDPMVVAAFCLAVHNGGDILGGVNMARKITK------PHDISFHELTKPQDLDS 410
Query: 410 K-----VTELALSVQDCVNDLT--------------KASSGYVFVSKKIERNVQQIFDVL 450
K V + A SV+ +N +T S VF + V +IF+
Sbjct: 411 KMLIDEVVDFAASVKQVLNWMTDEYYVSLAMAEYPQAPYSDLVFFPLAVYLRVCRIFECS 470
Query: 451 VNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
+ E K+ IDY+MLG G L E R +++ T+
Sbjct: 471 RDGPEKGFLPKQGRKIDYEMLGLGGLQEVRHTFARVVFDTV 511
>gi|449501476|ref|XP_004161378.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus]
Length = 571
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 192/462 (41%), Positives = 275/462 (59%), Gaps = 31/462 (6%)
Query: 52 NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTA 111
NWK S +LGI +MIP P+ VL LK G++ YLVGGCVRDL+L RVPKDFD+IT+A
Sbjct: 116 NWKRFSSNHLGIATSMIPIPTRKVLNGLKKTGYEVYLVGGCVRDLILNRVPKDFDIITSA 175
Query: 112 NLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDE 171
LK++ R F EI+GRRFPIC VHI G+++EVSSF T + + + T + P C+E
Sbjct: 176 QLKEVSRIFLWCEIVGRRFPICHVHIDGTIVEVSSFSTSNRPFDRQLTSAAIEKPMNCEE 235
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
ID VRW+N + RDFTIN L +DP+ N +YDY G+ D+R K+RT++PA SF ED ARI
Sbjct: 236 IDFVRWKNCLQRDFTINGLMYDPYNNVVYDYLGGMEDIRKAKVRTVVPACTSFQEDFARI 295
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
R +R AARL F KDI ++ +LS + L+K+R+ ME+NY+LSYG+AE+S+ LL +Y
Sbjct: 296 FRAIRFAARLQFHFSKDIAGSIKNLSCLVFTLNKARLQMEMNYLLSYGSAEASLRLLWKY 355
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQA 351
LL+ILLP AAY + + + + ML+ LF +LDKL++ +RP +LWV +L+ H A
Sbjct: 356 GLLEILLPIQAAYFIRNGFRRSDKGSNMLLSLFSSLDKLLAPNRPCHSSLWVAVLALHVA 415
Query: 352 LVSDPQDAFVVWVFASVLYH-GKWKEGVKFAR--DRAKEPVKFVPEISGFSEIESDEQLA 408
L P+ VV F +++ G E + A+ +RA + F E+ E L
Sbjct: 416 LSDQPRSPLVVAAFGLAVHNGGNMMEAISIAKSINRAHN--------ANFCELLEPENLE 467
Query: 409 VK-----VTELALSVQDCVNDLT--------------KASSGYVFVSKKIERNVQQIFDV 449
V+ V +L V+ ++ +T +S VF+ + V +IF+
Sbjct: 468 VQALIDEVMDLTTFVKAALHKMTDEHFVSLALETYPQAPASDLVFIPLVVYLKVCKIFEC 527
Query: 450 LVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
+V E KR I+Y+ L GNL+E R V +I+ T+
Sbjct: 528 VVEGAERGFVPKRGK-INYECLALGNLLELRHVFARIVFDTV 568
>gi|12322982|gb|AAG51472.1|AC069471_3 hypothetical protein [Arabidopsis thaliana]
Length = 462
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 179/377 (47%), Positives = 242/377 (64%), Gaps = 11/377 (2%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK +D+ GI R+MIP + +VL LK +GFQ YLVGGCVRDL+L R+PKDFDVITTA
Sbjct: 46 WKKLDANEFGIQRSMIPDSTRMVLNKLKKKGFQVYLVGGCVRDLILDRIPKDFDVITTAE 105
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEI 172
LK++R+ F +I+GRRFPIC V++ +IEVS GK + P GCDE
Sbjct: 106 LKEVRKVFPGCQIVGRRFPICHVYVDDIIIEVSR--------TGKAPNKSFRRPAGCDER 157
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +RW+N + RDFT+N L FDP N +YDY G+ DLR K+RT+ A LSF ED ARIL
Sbjct: 158 DYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTVSAANLSFVEDTARIL 217
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +RIAARLG S KD+ ++ LSSS+ RLD SRI ME+NYML+YG+AE+S+ LL R+
Sbjct: 218 RAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLAYGSAEASLRLLWRFG 277
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
L++ILLP A+YL Q + ML+ LF NLD+LV+ DRP LW+G+L+FH+AL
Sbjct: 278 LMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPCSEFLWIGILAFHKAL 337
Query: 353 VSDPQDAFVVWVFASVLYHG-KWKEGVKFARDRAKEPVKFVPEISGFSE--IESDEQLAV 409
V P+D VV F +Y E + AR +K+ E+S + +S+ +++
Sbjct: 338 VDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELSSPEKDTADSESKISQ 397
Query: 410 KVTELALSVQDCVNDLT 426
+V +LA S++ L
Sbjct: 398 QVIKLAESIRSAARKLN 414
>gi|356507386|ref|XP_003522448.1| PREDICTED: uncharacterized protein LOC100796540 [Glycine max]
Length = 540
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 189/454 (41%), Positives = 267/454 (58%), Gaps = 17/454 (3%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK ++ LGI +MI + VL LK +G+ YLVGGCVRDL+L++ PKDFD+IT+A
Sbjct: 69 WKRLNYEELGIRNSMIGSTTKKVLNGLKKKGYDVYLVGGCVRDLILKKTPKDFDIITSAE 128
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEI 172
LK++ R F SEI+G+RFP+C VH+ +++EVSSF+T K G E + P GC +
Sbjct: 129 LKEVTRTFSWSEIVGKRFPVCHVHMDDTIVEVSSFDTT-KCKAGMEFSHHIEAPSGCGKK 187
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +RW N ++RDFTIN L DP+ YDY GI D+R K+RT+IPA SF EDCARIL
Sbjct: 188 DHLRWMNCLNRDFTINGLMLDPYARIAYDYFGGIEDIRKAKVRTVIPAETSFQEDCARIL 247
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +RIAARLG S K+ + +LSSS+ LDK R++ME+NYML++G+ E+S+ LL ++
Sbjct: 248 RAIRIAARLGFSISKETAHFIKNLSSSVLSLDKGRLLMEMNYMLAFGSGEASLRLLWKFG 307
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
LL ILLPF AAY Q + ML+ LF NLDKL++ +RP +LWVG+L+ H+AL
Sbjct: 308 LLDILLPFQAAYFAQHGFQRRDRRTNMLLSLFSNLDKLLAPNRPCHNSLWVGILALHKAL 367
Query: 353 VSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKV 411
P++ V F+ +++ G E V A K PE+ S +++ E L ++
Sbjct: 368 SDRPRNPLAVAAFSLAVHNGGNLLEAVSMAGMINKPHDVRFPELLDPSGLDA-EALEAEI 426
Query: 412 TELALSVQDCVNDLTK--------------ASSGYVFVSKKIERNVQQIFDVLVNSIESY 457
+LA SV+ + +T S VF+ + V +FD + S
Sbjct: 427 LDLAESVRGTILQMTNEYFVSQAMADYPQAPRSNLVFIPITLYVKVYNMFDCVRRSTVKK 486
Query: 458 NSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
K+ IDY L GNL E R V +I+ T+
Sbjct: 487 FLSKQHRKIDYQSLALGNLQEVRHVFARIVFDTV 520
>gi|115458124|ref|NP_001052662.1| Os04g0395900 [Oryza sativa Japonica Group]
gi|21742315|emb|CAD40772.1| OSJNBb0039F02.3 [Oryza sativa Japonica Group]
gi|113564233|dbj|BAF14576.1| Os04g0395900 [Oryza sativa Japonica Group]
gi|215767631|dbj|BAG99859.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 542
Score = 342 bits (876), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 192/464 (41%), Positives = 273/464 (58%), Gaps = 36/464 (7%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK V ++ GI +MIP +W VL L+S+G+ YLVGGCVRDL++++ PKDFD+ITTA+
Sbjct: 77 WKKVSAKRFGIKDSMIPDEAWNVLHRLRSRGYDVYLVGGCVRDLIMKKTPKDFDIITTAD 136
Query: 113 LKQIRRQFHRSEII-GRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDE 171
L+Q++ F S +I GRRFPIC V+ S++EVSSF T A+ G + S+ P+ C +
Sbjct: 137 LRQVKDTFSGSAVIVGRRFPICHVYENNSIVEVSSFNTYAR-GSTSNQIYTSKSPH-CSK 194
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D +RW+N RDFTIN L F+P+ KIYDY GI D++ K+RT+IPA SF EDCARI
Sbjct: 195 NDYIRWKNCQGRDFTINGLMFNPYAEKIYDYFGGIEDIKKAKVRTVIPAGTSFQEDCARI 254
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +RIAARLG +F K+ + +L+ S+ RLDK RI+ME+NYML+YG+AE+S+ LL R+
Sbjct: 255 LRAIRIAARLGFNFPKETAYYVRTLACSVARLDKGRILMEINYMLAYGSAEASLRLLWRF 314
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQA 351
LL+ LLPF AAY K + ML+ LF LD ++ +RP +LW+ +L+ H+A
Sbjct: 315 GLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISILALHEA 374
Query: 352 LVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSE-----IESDEQ 406
LV P+D VV FA LY G + A D K + +GFSE + D+
Sbjct: 375 LVRQPRDPLVVATFALALYLGG---DMSLALDIGKSINR--QHNTGFSELLEPQVWDDKH 429
Query: 407 LAVKVTELALSVQDCVNDLTKASSGYVFVSKKIERNVQ-----------QIFDVLVNSIE 455
L +V LA+S++ + ++T FV+ + + Q Q + ++ IE
Sbjct: 430 LVGEVQSLAVSMRRALTEMTDE----YFVANAMAKIPQAPSSDLVFIPLQAYLKVLKLIE 485
Query: 456 SYNSGKRSHI--------IDYDMLGKGNLVETRFVLGKIILKTI 491
GK+ H IDY L G E R V ++ T+
Sbjct: 486 CVQHGKKEHGYEPKRDGNIDYHDLSYGTPAEVRNVFTLVVFNTL 529
>gi|125548115|gb|EAY93937.1| hypothetical protein OsI_15711 [Oryza sativa Indica Group]
Length = 542
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 192/464 (41%), Positives = 273/464 (58%), Gaps = 36/464 (7%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK V ++ GI +MIP +W VL L+S+G+ YLVGGCVRDL++++ PKDFD+ITTA+
Sbjct: 77 WKKVSAKRFGIKDSMIPDEAWNVLHRLRSRGYDVYLVGGCVRDLIMKKTPKDFDIITTAD 136
Query: 113 LKQIRRQFHRSEII-GRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDE 171
L+Q++ F S +I GRRFPIC V+ S++EVSSF T A+ G + S+ P+ C +
Sbjct: 137 LRQVKDTFSGSAVIVGRRFPICHVYENNSIVEVSSFNTYAR-GSTSNQIYTSKSPH-CSK 194
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D +RW+N RDFTIN L F+P+ KIYDY GI D++ K+RT+IPA SF EDCARI
Sbjct: 195 NDYIRWKNCQGRDFTINGLMFNPYAEKIYDYFGGIEDIKKAKVRTVIPAGTSFQEDCARI 254
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +RIAARLG +F K+ + +L+ S+ RLDK RI+ME+NYML+YG+AE+S+ LL R+
Sbjct: 255 LRAIRIAARLGFNFPKETAYYVRTLACSVARLDKGRILMEINYMLAYGSAEASLRLLWRF 314
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQA 351
LL+ LLPF AAY K + ML+ LF LD ++ +RP +LW+ +L+ H+A
Sbjct: 315 GLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISILALHEA 374
Query: 352 LVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSE-----IESDEQ 406
LV P+D VV FA LY G + A D K + +GFSE + D+
Sbjct: 375 LVRQPRDPLVVATFALALYLGG---DMSLALDIGKSINR--QHNTGFSELLEPQVWDDKH 429
Query: 407 LAVKVTELALSVQDCVNDLTKASSGYVFVSKKIERNVQ-----------QIFDVLVNSIE 455
L +V LA+S++ + ++T FV+ + + Q Q + ++ IE
Sbjct: 430 LVGEVQSLAVSMRRALTEMTDE----YFVANAMAKIPQAPSSDLVFIPLQAYLKVLKLIE 485
Query: 456 SYNSGKRSHI--------IDYDMLGKGNLVETRFVLGKIILKTI 491
GK+ H IDY L G E R V ++ T+
Sbjct: 486 CVQHGKKEHGYEPKRDGNIDYHDLSYGTPAEVRNVFTLVVFDTL 529
>gi|357163185|ref|XP_003579651.1| PREDICTED: uncharacterized protein LOC100821667 [Brachypodium
distachyon]
Length = 541
Score = 341 bits (874), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 193/474 (40%), Positives = 277/474 (58%), Gaps = 32/474 (6%)
Query: 39 MCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLL 98
C+D + + WK V ++ G +MIP +W VL L+S+G+ YLVGGCVRDL++
Sbjct: 66 FCAD----DTEGPEWKKVSAKRFGFKESMIPDEAWNVLHRLRSRGYDVYLVGGCVRDLIM 121
Query: 99 RRVPKDFDVITTANLKQIRRQFHRSEII-GRRFPICRVHIKGSVIEVSSFETVAKHGEGK 157
+++PKDFD+ITTA+L+Q++ F S +I GRRFPI VH S++EVSSF T A+ G
Sbjct: 122 KKIPKDFDIITTADLRQVKDTFTGSAVIVGRRFPIVHVHDNNSIVEVSSFNTYARGSSGN 181
Query: 158 ETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTL 217
+ S+ P+ C + D +RW+N RDFTIN L F+P+ KIYDY GI D++ K+RT+
Sbjct: 182 Q-AHTSKSPH-CSKNDYIRWKNCQGRDFTINGLMFNPYSEKIYDYLGGIEDIKKAKVRTV 239
Query: 218 IPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLS 277
IPA SF EDCARILR +RIAARLG SF K+ + +L+ S+ RLDK R++ME+NYML+
Sbjct: 240 IPAGTSFHEDCARILRAIRIAARLGFSFPKETAYYVRTLACSVARLDKGRLLMEVNYMLA 299
Query: 278 YGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPA 337
YG+AE+S+ LL R+ LL+ LLPF AAY K + ML+ LF LD ++ +RP
Sbjct: 300 YGSAEASLRLLWRFGLLEHLLPFQAAYFSSTHFKRKDKGTNMLLILFSKLDSFLAPNRPC 359
Query: 338 DYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISG 397
+LW+ +L+FH+ALV P+D VV FA +Y G + A D + + +G
Sbjct: 360 HNSLWISILAFHEALVRQPRDPLVVATFALAMYLGG---DLSLAVDIGQSINR--RHDAG 414
Query: 398 FSE-----IESDEQLAVKVTELALSVQDCVNDLT--------------KASSGYVFVSKK 438
FSE + SD+ L +V LA S++ + ++T SS VF+ +
Sbjct: 415 FSELLEPQVWSDKHLVAEVQGLATSMRRALTEMTDEYYVANAMAKIPQAPSSDLVFIPLQ 474
Query: 439 IERNVQQIFDVLVNS-IESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
V ++ + + + E KR IDY L G E R + +I TI
Sbjct: 475 AYLKVLKLIECVQHGKKECGYEPKRDGNIDYHSLSHGTPAEVRNLFTLVIFDTI 528
>gi|356511530|ref|XP_003524478.1| PREDICTED: CCA-adding enzyme-like [Glycine max]
Length = 538
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 192/493 (38%), Positives = 294/493 (59%), Gaps = 20/493 (4%)
Query: 16 KSLTKIQLKQRFNHTLEPQ--MCREMCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSW 73
KSL ++++++R E E+ S++ N +V WK ++S+ +G+ +MI P+
Sbjct: 30 KSLPRVEVEERRGSHREQDKGTSEELISENNNSKVRA--WKKLNSKEIGLRNSMIAIPTK 87
Query: 74 VVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPIC 133
VL +LK +G YLVGGCVRDL+L++ PKDFD+IT+A+LK++R+ F EI+G+RFPIC
Sbjct: 88 KVLNVLKKKGHDVYLVGGCVRDLILKQTPKDFDIITSADLKEVRKTFSLCEIVGKRFPIC 147
Query: 134 RVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFD 193
VH+ G+++EVSSF T + P+ CD+ D +RWRN + RDFTIN L FD
Sbjct: 148 HVHMDGTIVEVSSFNTARCKSSMHFIYDDIEAPHDCDKEDYLRWRNCLRRDFTINGLMFD 207
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P+ +YDY G+ D+ K+RT++PA SF EDCARILR +RIAARLG S ++ ++
Sbjct: 208 PYARIVYDYMGGMEDIVKAKVRTVVPAATSFREDCARILRAIRIAARLGFSISRETAQSV 267
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKIT 313
+LS S+ RLD+SR++ME+NYML+YG+ E+S+ LL R+ LL ILLPF AAY + +
Sbjct: 268 KNLSYSVLRLDRSRLLMEINYMLAYGSGEASLRLLWRFGLLDILLPFQAAYFVRGGFRRR 327
Query: 314 AENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYH-G 372
+ +L+ F N+DKL++ +RP +LWV +L+ H+AL P+D+ VV F+ L++ G
Sbjct: 328 DKRTNLLLSFFSNVDKLLAPNRPCHSSLWVVILALHKALSDKPRDSSVVAAFSLALHNGG 387
Query: 373 KWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQ------------- 419
E + AR K PE+ S ++ +E L ++ +LA SV+
Sbjct: 388 NLSEAISIARRINKTHDARFPELLDPSGLD-EEDLEAEILDLAESVKGSLLQMKDRHFVS 446
Query: 420 DCVNDLTKAS-SGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVE 478
+ D +A S V + + FD + S K+ IDY+ L +G+L+E
Sbjct: 447 GAMADYPQAPHSDLVLIPIPMYLRALNFFDCVRVSASKNFLSKQGRQIDYESLARGDLLE 506
Query: 479 TRFVLGKIILKTI 491
R V +I+ T+
Sbjct: 507 VRHVFARIVFDTV 519
>gi|224134120|ref|XP_002321741.1| predicted protein [Populus trichocarpa]
gi|222868737|gb|EEF05868.1| predicted protein [Populus trichocarpa]
Length = 481
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 188/469 (40%), Positives = 272/469 (57%), Gaps = 27/469 (5%)
Query: 43 SFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVP 102
SF+ + WK +S+ LGI+ + I +P+ VL LK G++ YLVGGCVRDL+L+R P
Sbjct: 14 SFSGDPKALEWKKWNSKELGISNSTISRPTKKVLDGLKKNGYEVYLVGGCVRDLILKRTP 73
Query: 103 KDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLL 162
KDFD+IT+A LK++ R F + I+G+RFPIC VH+ +++EVSSF T + +
Sbjct: 74 KDFDIITSAELKEVVRTFPQCIIVGKRFPICHVHVGDTIVEVSSFSTTGPKFRLDLSNGI 133
Query: 163 SQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 222
S P CDE D VRW+N + RD TIN L FDP+ +YDY G+ D++ K+RT++PA
Sbjct: 134 SP-PIDCDEKDYVRWKNCLRRDLTINGLMFDPYKRIVYDYVGGLEDIKKAKVRTVVPAST 192
Query: 223 SFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAE 282
SF EDCARILR +RIAARLG F ++ + +LS S+ RLD RIMME+NYML+YG+AE
Sbjct: 193 SFQEDCARILRAVRIAARLGFRFTRETAHFIKNLSRSLLRLDNQRIMMEMNYMLAYGSAE 252
Query: 283 SSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLW 342
+S+ +L ++ LL++LLPF AAY + K + ML+ LF NLDK ++ DRP +LW
Sbjct: 253 ASLRILWKFGLLELLLPFQAAYFVRDGFKRQDKRSNMLLCLFSNLDKHLAPDRPCHNSLW 312
Query: 343 VGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEI 401
VG+L+FH+AL P+D VV F +++ G GVK + K P F E+
Sbjct: 313 VGILAFHKALSDQPRDPMVVAAFCLAVHNGGDILGGVKMVKKFTK------PHDVSFHEL 366
Query: 402 E-----SDEQLAVKVTELALSVQDCVNDLT--------------KASSGYVFVSKKIERN 442
+ E L +V + A SV+ + +T S VF +
Sbjct: 367 SEPQNLNSEALVDEVVDFAASVKQVLYWMTDEYCVSQAMAEYPQAPCSDLVFFPLAVYLK 426
Query: 443 VQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
V +IF+ + K+ I+Y+ML G+L E R +++ T+
Sbjct: 427 VCRIFECSREGSQKVFMPKQGRKINYEMLALGSLQEVRHTFARVVFDTV 475
>gi|293332685|ref|NP_001168693.1| hypothetical protein [Zea mays]
gi|223950275|gb|ACN29221.1| unknown [Zea mays]
gi|414587498|tpg|DAA38069.1| TPA: hypothetical protein ZEAMMB73_877949 [Zea mays]
Length = 535
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 187/460 (40%), Positives = 267/460 (58%), Gaps = 28/460 (6%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK + ++ GI +MIP +W VL L+S+G+ YLVGGCVRDL++++ PKDFD+ITTA+
Sbjct: 70 WKKISAKRFGIKESMIPPEAWNVLHRLRSRGYDVYLVGGCVRDLIMKKTPKDFDIITTAD 129
Query: 113 LKQIRRQFHRSEII-GRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDE 171
L+Q++ F S +I GRRFPIC VH S++EVSSF T A+ G + + + C +
Sbjct: 130 LRQVKDTFLGSAVIVGRRFPICHVHENNSIVEVSSFNTCARGSSGSQ--IYNSKSQNCSK 187
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D VRW+N RDFTIN L F+P+ KIYDY GI D++ K+RT+IPA SF EDCARI
Sbjct: 188 NDFVRWKNCQRRDFTINGLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAGTSFQEDCARI 247
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +RIAARLG SF K+ + +L+ S+ RLDK+RI+ME+NYML+YG+AE+S+ LL R+
Sbjct: 248 LRAIRIAARLGFSFPKETAYYVRTLACSVARLDKARILMEMNYMLAYGSAEASLRLLWRF 307
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQA 351
LL+ LLPF AAY K + ML+ LF LD ++ +RP +LW+ LL+FH+A
Sbjct: 308 GLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISLLAFHEA 367
Query: 352 LVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSE-----IESDEQ 406
L P D +V FA Y G + A D K + +GF E + +D+
Sbjct: 368 LARKPCDPLIVATFALAFYLGG---DMSLAVDIGKSINR--QHDTGFRELLEPKVWTDKH 422
Query: 407 LAVKVTELALSVQDCVNDLT--------------KASSGYVFVSKKIERNVQQIFD-VLV 451
LA +V A ++ + ++T SS VF+ + V + + V
Sbjct: 423 LAGEVQSFAALMKQALTEMTDEYHVANAMAKIPQAPSSDLVFIPLQAYLKVLKFIECVQY 482
Query: 452 NSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
E + KR +I+Y L G E R + ++ T+
Sbjct: 483 GKKERGHEPKRDGMINYHNLSNGTHAEIRNLFTLVVFDTL 522
>gi|414587499|tpg|DAA38070.1| TPA: hypothetical protein ZEAMMB73_877949 [Zea mays]
Length = 471
Score = 338 bits (867), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 187/460 (40%), Positives = 267/460 (58%), Gaps = 28/460 (6%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK + ++ GI +MIP +W VL L+S+G+ YLVGGCVRDL++++ PKDFD+ITTA+
Sbjct: 6 WKKISAKRFGIKESMIPPEAWNVLHRLRSRGYDVYLVGGCVRDLIMKKTPKDFDIITTAD 65
Query: 113 LKQIRRQFHRSEII-GRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDE 171
L+Q++ F S +I GRRFPIC VH S++EVSSF T A+ G + + + C +
Sbjct: 66 LRQVKDTFLGSAVIVGRRFPICHVHENNSIVEVSSFNTCARGSSGSQ--IYNSKSQNCSK 123
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D VRW+N RDFTIN L F+P+ KIYDY GI D++ K+RT+IPA SF EDCARI
Sbjct: 124 NDFVRWKNCQRRDFTINGLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAGTSFQEDCARI 183
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +RIAARLG SF K+ + +L+ S+ RLDK+RI+ME+NYML+YG+AE+S+ LL R+
Sbjct: 184 LRAIRIAARLGFSFPKETAYYVRTLACSVARLDKARILMEMNYMLAYGSAEASLRLLWRF 243
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQA 351
LL+ LLPF AAY K + ML+ LF LD ++ +RP +LW+ LL+FH+A
Sbjct: 244 GLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISLLAFHEA 303
Query: 352 LVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSE-----IESDEQ 406
L P D +V FA Y G + A D K + +GF E + +D+
Sbjct: 304 LARKPCDPLIVATFALAFYLGG---DMSLAVDIGKSINR--QHDTGFRELLEPKVWTDKH 358
Query: 407 LAVKVTELALSVQDCVNDLT--------------KASSGYVFVSKKIERNVQQIFD-VLV 451
LA +V A ++ + ++T SS VF+ + V + + V
Sbjct: 359 LAGEVQSFAALMKQALTEMTDEYHVANAMAKIPQAPSSDLVFIPLQAYLKVLKFIECVQY 418
Query: 452 NSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
E + KR +I+Y L G E R + ++ T+
Sbjct: 419 GKKERGHEPKRDGMINYHNLSNGTHAEIRNLFTLVVFDTL 458
>gi|242075570|ref|XP_002447721.1| hypothetical protein SORBIDRAFT_06g014480 [Sorghum bicolor]
gi|241938904|gb|EES12049.1| hypothetical protein SORBIDRAFT_06g014480 [Sorghum bicolor]
Length = 542
Score = 338 bits (866), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 191/474 (40%), Positives = 272/474 (57%), Gaps = 42/474 (8%)
Query: 46 QEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDF 105
+ +D WK V ++ GI +MIP +W VL L+S+G+ YLVGGCVRDL++++ PKDF
Sbjct: 70 EGLDGPEWKKVSAKRFGIKESMIPAEAWNVLHRLRSRGYDVYLVGGCVRDLIMKKTPKDF 129
Query: 106 DVITTANLKQIRRQFHRSEII-GRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQ 164
D+ITTA+L+Q++ F S +I GRRFPIC VH S++EVSSF T A+ G + + +
Sbjct: 130 DIITTADLRQVKDTFSGSAVIVGRRFPICHVHENNSIVEVSSFYTSARGSSGSQ--IYNS 187
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
C + D VRW+N RDFTIN L F+P+ KIYDY GI D++ K+RT+IPA SF
Sbjct: 188 KSQNCSKNDFVRWKNCQGRDFTINGLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAGTSF 247
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
EDCARILR +RIAARLG SF K+ + +L+ S+ RLDK RI++E+NYML+YG+AE+S
Sbjct: 248 QEDCARILRAIRIAARLGFSFPKETAYYVRTLAYSVARLDKGRILLEMNYMLAYGSAEAS 307
Query: 285 ICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVG 344
+ LL R+ LL+ LLPF AAY K + ML+ LF LD ++ +RP +LW+
Sbjct: 308 LRLLWRFGLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWIS 367
Query: 345 LLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSE---- 400
LL+FH+AL P D VV FA Y G + A D K + +GF E
Sbjct: 368 LLAFHEALARKPCDPLVVATFALAFYLGG---DMSLAVDIGKSINR--QHDTGFRELLEP 422
Query: 401 -IESDEQLAVKVTELALSVQDCVNDLT--------------KASSGYVFVSKKIERNVQQ 445
+ +D+ LA +V A ++ + ++T SS VF+ Q
Sbjct: 423 KVWTDKHLAGEVQSFAALMKRALTEMTDEYHVGNAMAKIPQAPSSDLVFIP-------LQ 475
Query: 446 IFDVLVNSIESYNSG--------KRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
++ ++ SIES G KR +I+Y L G+ E + ++ T+
Sbjct: 476 VYLKVLKSIESVQYGKKERGYEPKRDGMINYHNLSNGSHAEITNLFTLVVFDTL 529
>gi|356527592|ref|XP_003532392.1| PREDICTED: CCA-adding enzyme-like [Glycine max]
Length = 527
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 184/462 (39%), Positives = 272/462 (58%), Gaps = 16/462 (3%)
Query: 45 NQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKD 104
N V WK ++S+ LG+ +MI P+ VL +LK +G YLVGGCVRDL+L++ PKD
Sbjct: 59 NNNSKVQAWKKLNSKELGLRNSMIAVPTKKVLNVLKKKGHDVYLVGGCVRDLILKQTPKD 118
Query: 105 FDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQ 164
FD+IT+A+LK++R+ F EI+G+RFPIC VH+ G+++EVSSF T +
Sbjct: 119 FDIITSADLKEVRKTFSWCEIVGKRFPICHVHMDGTIVEVSSFNTARCKSSMHFIYDDIE 178
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
P CD+ D +RWRN + RDFTIN L FDP+ +YDY G+ D+ K+RT++PA SF
Sbjct: 179 APNDCDKEDYLRWRNCLKRDFTINGLMFDPYARIVYDYMGGMEDIIKAKVRTVVPAATSF 238
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
EDCARILR +R+AARLG S ++ ++ +LS S+ RLDK R+ ME+NYML+YG+ E+S
Sbjct: 239 REDCARILRAIRVAARLGFSISRETAQSVKNLSYSVLRLDKGRLWMEINYMLAYGSGEAS 298
Query: 285 ICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVG 344
+ LL R+ LL ILLPF AAY + + +L+ F N+DKL++ +RP +LWV
Sbjct: 299 LRLLWRFGLLDILLPFQAAYFVCGGFRRRDKRTNLLLSFFSNVDKLLAPNRPCHSSLWVA 358
Query: 345 LLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEIES 403
+L+ H+AL P+D+ VV F+ L++ G E + AR K PE+ S ++
Sbjct: 359 ILALHKALSDKPRDSSVVAAFSLALHNGGNLSEAINIARRINKAHDARFPELLDPSGLD- 417
Query: 404 DEQLAVKVTELALSVQDCVNDLT--------------KASSGYVFVSKKIERNVQQIFDV 449
+E L ++ +LA SV+ + +T S V + + FD
Sbjct: 418 EENLEAEILDLAESVKGSLLQMTDRHLVSGAMADYPQAPHSNLVLIPLSMFLKALNFFDC 477
Query: 450 LVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
+ S K+ IDY+ L +G+L+E R V +I+ T+
Sbjct: 478 VNVSTGKNYLSKQGRQIDYESLARGDLLEVRHVFARIVFDTV 519
>gi|357520559|ref|XP_003630568.1| Poly(A) polymerase [Medicago truncatula]
gi|355524590|gb|AET05044.1| Poly(A) polymerase [Medicago truncatula]
Length = 543
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 198/507 (39%), Positives = 293/507 (57%), Gaps = 51/507 (10%)
Query: 30 TLEPQMCREMCSDSFNQ-EVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQG----- 83
++EP+ C S + Q WK ++S+ LG +MI P VL +LK +G
Sbjct: 35 SVEPEECNR--SSNLKQVNKKAPAWKKMNSKELGFRNSMIASPIKKVLNMLKKKGMFCCV 92
Query: 84 ----------------------FQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
+ YLVGGCVRD++LR+ PKDFD++T+A+LK++ R F
Sbjct: 93 SACYLNSKLSRSVTLFLVVVVGYNVYLVGGCVRDMILRQTPKDFDILTSADLKEVMRTFS 152
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
EI+G+RFPIC VH+ G ++EVSSF T AK G+ + P G D+ D +RWRN +
Sbjct: 153 WCEIVGKRFPICHVHMDGIIVEVSSFNT-AKRKPGRHFAHDIEAPKGFDKEDYLRWRNCV 211
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
+RDFTIN FDPF +YDY G+ D+ K+RT++PA SF EDCARILR +RIAARL
Sbjct: 212 NRDFTINGFMFDPFAKIVYDYMGGMEDIIKAKVRTMVPAATSFQEDCARILRAIRIAARL 271
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
G S + ++ LS SI RLDK R++ME+NYML+YG+ E+S+ LL ++ LL ILLPF
Sbjct: 272 GFSISTETARSVKHLSYSILRLDKGRLLMEMNYMLAYGSGEASLRLLWKFGLLDILLPFQ 331
Query: 302 AAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFV 361
A Y + + + ML+ LFFNLDKL++ + P +LWVG+L+ H++L P++ V
Sbjct: 332 ALYFVRHGFRRRDKRTNMLLSLFFNLDKLLAPNSPCHSSLWVGILALHKSLSDQPRNPLV 391
Query: 362 VWVFASVLYH-GKWKEGVKFARDRAKEP--VKFVPEISGFSEIES--------DEQLAVK 410
+ F+ +++ G E V AR R +P ++F PE+S ++ + D +VK
Sbjct: 392 IAAFSLAVHNGGNLLEAVDIAR-RINKPHDIRF-PELSDPCDLNAKALENEILDLVESVK 449
Query: 411 VTELAL----SVQDCVNDLTKAS-SGYVFVSKKIERNVQQIFDVL-VNSIESYNSGKRSH 464
V+ L + SV + D +A S VF+ + IFD L V+S + + S K+S
Sbjct: 450 VSLLQMTSRHSVARAMVDYPQAPHSDMVFIPLGMYLKALSIFDCLKVSSCKKFLS-KKSR 508
Query: 465 IIDYDMLGKGNLVETRFVLGKIILKTI 491
IDY+ L +G+L E R + +++ T+
Sbjct: 509 KIDYESLARGDLPEIRHLFARVVFDTV 535
>gi|449440506|ref|XP_004138025.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus]
Length = 441
Score = 335 bits (858), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 185/447 (41%), Positives = 266/447 (59%), Gaps = 31/447 (6%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEII 126
MIP P+ VL LK G++ YLVGGCVRDL+L RVPKDFD+IT+A LK++ R F EI+
Sbjct: 1 MIPIPTRKVLNGLKKTGYEVYLVGGCVRDLILNRVPKDFDIITSAQLKEVSRIFLWCEIV 60
Query: 127 GRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFT 186
GRRFPIC VHI G+++EVSSF T + + + T + P C+EID VRW+N + RDFT
Sbjct: 61 GRRFPICHVHIDGTIVEVSSFSTSNRPFDRQLTSAAIEKPMNCEEIDFVRWKNCLQRDFT 120
Query: 187 INSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFC 246
IN L +DP+ N +YDY G+ D+R K+RT++PA SF ED ARI R +R AARL F
Sbjct: 121 INGLMYDPYNNVVYDYLGGMEDIRKAKVRTVVPACTSFQEDFARIFRAIRFAARLQFHFS 180
Query: 247 KDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLD 306
KDI ++ +LS + L+K+R+ ME+NY+LSYG+AE+S+ LL +Y LL+ILLP AAY
Sbjct: 181 KDIAGSIKNLSCLVFTLNKARLQMEMNYLLSYGSAEASLRLLWKYGLLEILLPIQAAYFI 240
Query: 307 QQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFA 366
+ + + + ML+ LF +LDKL++ +RP +LWV +L+ H AL P+ VV F
Sbjct: 241 RNGFRRSDKGSNMLLSLFSSLDKLLAPNRPCHSSLWVAVLALHVALSDQPRSPLVVAAFG 300
Query: 367 SVLYH-GKWKEGVKFAR--DRAKEPVKFVPEISGFSEIESDEQLAVK-----VTELALSV 418
+++ G E + A+ +RA + F E+ E L V+ V +L V
Sbjct: 301 LAVHNGGNMMEAISIAKSINRAHN--------ANFCELLEPENLEVQALIDEVMDLTTFV 352
Query: 419 QDCVNDLT--------------KASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSH 464
+ ++ +T +S VF+ + V +IF+ +V E KR
Sbjct: 353 KAALHKMTDEHFVSLALETYPQAPASDLVFIPLVVYLKVCKIFECVVEGAERGFVPKRGK 412
Query: 465 IIDYDMLGKGNLVETRFVLGKIILKTI 491
I+Y+ L GNL+E R V +I+ T+
Sbjct: 413 -INYECLALGNLLELRHVFARIVFDTV 438
>gi|297808367|ref|XP_002872067.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297317904|gb|EFH48326.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 533
Score = 334 bits (857), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 191/464 (41%), Positives = 280/464 (60%), Gaps = 32/464 (6%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK ++S++LGI+ +MI + + VL LKS+G YLVGGCVRDL+L+R PKDFD++T+A
Sbjct: 68 WKRLNSKDLGISSSMIAKSTRKVLNGLKSKGHDVYLVGGCVRDLILKRTPKDFDILTSAE 127
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCD-E 171
L+++ + F R EI+GRRFPIC VHI ++EVSSF T A++ + T S+ G D +
Sbjct: 128 LREVVQTFPRCEIVGRRFPICHVHIGDDLVEVSSFSTSAQNYP-RNTRTESKESSGSDGD 186
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D +R N + RDFTIN L FDP+ +YDY G+ D+R K+RT+I A SF +DCARI
Sbjct: 187 EDCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRTVIHAGTSFQQDCARI 246
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +RIAARLG K+ + +LS ++RLDK RI+ME+NYML+YG+AE+S+ LL ++
Sbjct: 247 LRAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKF 306
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQA 351
LL+ILLP AAYL + + + ML+ LF NLDKL++ DRP +LW+ +L+FH+A
Sbjct: 307 GLLEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKA 366
Query: 352 LVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVK 410
L P+ VV F+ +++ G E VK + A+ K S F +E +E L +
Sbjct: 367 LADQPRSPLVVAAFSLAVHNCGDILEAVKITKKIARPHDK-----SFFELVEPEENLDFQ 421
Query: 411 -----VTELALSVQDCVNDLT------KASSGY--------VFVSKKIERNVQQIFDVLV 451
V +L S++D +N +T KA S Y VF+ ++ +IFD V
Sbjct: 422 TLLDEVMDLDASIKDALNQMTDGYYISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDC-V 480
Query: 452 NSIESYNS----GKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
E++ K+ I+Y L G+ E R V +++ T+
Sbjct: 481 KKDETHTQMEFEAKKGSKIEYGSLYSGDFPEIRHVFARVVFDTV 524
>gi|22327016|ref|NP_197758.2| Polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
gi|332005816|gb|AED93199.1| Polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
Length = 527
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 187/461 (40%), Positives = 275/461 (59%), Gaps = 28/461 (6%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK ++S++LG++ +MI + + VL LKS+G YLVGGCVRDL+L+R PKDFD++T+A
Sbjct: 64 WKQLNSKDLGLSSSMIAKSTRKVLNGLKSKGHDVYLVGGCVRDLILKRTPKDFDILTSAE 123
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCD-E 171
L+++ R F R EI+GRRFPIC VHI +IEVSSF T A++ + T + G D +
Sbjct: 124 LREVVRTFPRCEIVGRRFPICHVHIGDDLIEVSSFSTSAQNS-SRNTRTECKESSGSDGD 182
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D +R N + RDFTIN L FDP+ +YDY G+ D+R K+RT+I A SF +DCARI
Sbjct: 183 EDCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRTVIHAGTSFHQDCARI 242
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +RIAARLG K+ + +LS ++RLDK RI+ME+NYML+YG+AE+S+ LL ++
Sbjct: 243 LRAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKF 302
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQA 351
+L+ILLP AAYL + + + ML+ LF NLDKL++ DRP +LW+ +L+FH+A
Sbjct: 303 GILEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKA 362
Query: 352 LVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVK 410
L P+ VV F+ +++ G E V+ + + K S F +E +E L +
Sbjct: 363 LADKPRSPIVVAAFSLAVHNCGDILEAVEITKKITRPHDK-----SFFELVEPEENLDFQ 417
Query: 411 -----VTELALSVQDCVNDLT------KASSGY--------VFVSKKIERNVQQIFDVLV 451
V +L S++D +N +T KA S Y VF+ ++ +IFD +
Sbjct: 418 TLLDEVMDLDASIEDALNQMTDAYFISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVK 477
Query: 452 NSIESYN-SGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
N K+ I+Y L G E R V +++ T+
Sbjct: 478 NEETRIGFEAKQGSKIEYGSLNSGYFPEIRHVFARVVFDTV 518
>gi|18377862|gb|AAL67117.1| AT5g23690/MQM1_4 [Arabidopsis thaliana]
gi|22137254|gb|AAM91472.1| AT5g23690/MQM1_4 [Arabidopsis thaliana]
Length = 527
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 187/461 (40%), Positives = 274/461 (59%), Gaps = 28/461 (6%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK ++S++LG++ +MI + + VL LKS+G YLVGGCVRDL+L+R PKDFD++T+A
Sbjct: 64 WKQLNSKDLGLSSSMIAKSTRKVLNGLKSKGHDVYLVGGCVRDLILKRTPKDFDILTSAE 123
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCD-E 171
L+++ R F R EI+GRRFPIC VHI +IEVSSF T A++ + T + G D +
Sbjct: 124 LREVVRTFPRCEIVGRRFPICHVHIGDDLIEVSSFSTSAQNS-SRNTRTECKESSGSDGD 182
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D +R N + RDFTIN L FDP+ +YDY G+ D+R K+RT I A SF +DCARI
Sbjct: 183 EDCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRTEIHAGTSFHQDCARI 242
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +RIAARLG K+ + +LS ++RLDK RI+ME+NYML+YG+AE+S+ LL ++
Sbjct: 243 LRAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKF 302
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQA 351
+L+ILLP AAYL + + + ML+ LF NLDKL++ DRP +LW+ +L+FH+A
Sbjct: 303 GILEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKA 362
Query: 352 LVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVK 410
L P+ VV F+ +++ G E V+ + + K S F +E +E L +
Sbjct: 363 LADKPRSPIVVAAFSLAVHNCGDILEAVEITKKITRPHDK-----SFFELVEPEENLDFQ 417
Query: 411 -----VTELALSVQDCVNDLT------KASSGY--------VFVSKKIERNVQQIFDVLV 451
V +L S++D +N +T KA S Y VF+ ++ +IFD +
Sbjct: 418 TLLDEVMDLDASIEDALNQMTDAYFISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVK 477
Query: 452 NSIESYN-SGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
N K+ I+Y L G E R V +++ T+
Sbjct: 478 NEETRIGFEAKQGSKIEYGSLNSGYFPEIRHVFARVVFDTV 518
>gi|297816090|ref|XP_002875928.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321766|gb|EFH52187.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 610
Score = 318 bits (815), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 173/420 (41%), Positives = 258/420 (61%), Gaps = 31/420 (7%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK ++S++LGIT +MI +P+ +VL LKS+G+ YLVGGCVRDL+L+R PKDFD++T+A
Sbjct: 60 WKKLNSKDLGITSSMISKPTRLVLNGLKSKGYDVYLVGGCVRDLILKRTPKDFDILTSAE 119
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKH-------GEGKETVLLSQI 165
L+++ R F R EI+G+RFPIC VH+ +IEVSSF T A++ G GK
Sbjct: 120 LREVVRTFSRCEIVGKRFPICHVHVGNEMIEVSSFSTSAQNSPRNMRTGSGKSN------ 173
Query: 166 PYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFT 225
G + D R N + RDFTIN L FDP+ +YDY GI D++ K+RT+ A SF
Sbjct: 174 --GSYDEDNTRLNNCLQRDFTINGLMFDPYAEVVYDYLGGIEDIKKAKIRTVFHAGTSFQ 231
Query: 226 EDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285
EDCARILRG RIAARLG + K+ + +LS ++RL + RI+ME+NYML+YG+AE+S+
Sbjct: 232 EDCARILRGTRIAARLGFTISKETAHFLKNLSFLVQRLHRGRILMEMNYMLAYGSAEASL 291
Query: 286 CLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGL 345
LL ++ +L+ILLP AAYL K + +L+ LF NLDKL++ DRP +LW+ +
Sbjct: 292 RLLWKFGILEILLPIQAAYLVHTGFKRRDKRSNLLLSLFGNLDKLLAPDRPCHSSLWLTI 351
Query: 346 LSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEIESD 404
L+ H+AL P+ VV F+ +++ G E VK R K + E+ E++S
Sbjct: 352 LALHKALADQPRYPSVVAAFSLAVHNGGDVLEAVKITRKVTKPHNRSFFELLEPEELDS- 410
Query: 405 EQLAVKVTELALSVQDCVNDLT------KASSGY--------VFVSKKIERNVQQIFDVL 450
+ L +V + S+++ + +T KA + Y VF+ ++ + ++IF+ +
Sbjct: 411 QTLLDEVMDFDSSIKEALGQMTDGRFISKAMAAYPQAPYSDMVFIPLQLYLDARRIFECV 470
>gi|15229038|ref|NP_190452.1| polynucleotide adenylyltransferase domain and RNA recognition
motif-containing protein [Arabidopsis thaliana]
gi|7576221|emb|CAB87911.1| putative protein [Arabidopsis thaliana]
gi|332644940|gb|AEE78461.1| polynucleotide adenylyltransferase domain and RNA recognition
motif-containing protein [Arabidopsis thaliana]
Length = 881
Score = 314 bits (805), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 173/427 (40%), Positives = 261/427 (61%), Gaps = 22/427 (5%)
Query: 45 NQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKD 104
N+ WK ++S++LGIT +MI +P+ +VL LKS+G+ YLVGGCVRDL+L+R PKD
Sbjct: 53 NKTSKAPEWKKLNSKDLGITTSMISKPTRIVLNGLKSKGYDVYLVGGCVRDLILKRTPKD 112
Query: 105 FDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKH-------GEGK 157
FD++T+A L+++ R F R EIIG++FPIC VHI +IEVSSF T A++ G GK
Sbjct: 113 FDILTSAELREVVRSFSRCEIIGKKFPICHVHIGNDMIEVSSFSTSAQNSLRNTRTGSGK 172
Query: 158 ETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTL 217
G + D +R+ N + RDFTIN L FDP+ IYDY GI D++ K+RT+
Sbjct: 173 SN--------GSYDEDSIRFNNCLQRDFTINGLMFDPYAKVIYDYLGGIEDIKKAKVRTV 224
Query: 218 IPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLS 277
A SF ED ARILRG RIAARLG + K+ + +LS ++RL + RI++E+NYML+
Sbjct: 225 FHAGTSFQEDSARILRGTRIAARLGFTISKETAHFLKNLSFLVQRLHRGRILLEMNYMLA 284
Query: 278 YGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPA 337
YG+AE+S+ LL ++ +L+ILLP AAYL + K + +L+ LF NLDKL++ D+P
Sbjct: 285 YGSAEASLRLLWKFGILEILLPIQAAYLVRTGFKRRDKRSNLLLSLFGNLDKLLAPDKPC 344
Query: 338 DYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEIS 396
+LW+ +L+ H+AL P+ VV F+ +++ G E VK R K + E+
Sbjct: 345 HSSLWLTILALHKALADQPRYPSVVAAFSLAVHNGGDVLEAVKNTRKVTKPHNRSFFELL 404
Query: 397 GFSEIESDEQLAVKVTELALSVQDCVNDLTKASSGYVFVSKKIERNVQQIF-DVLVNSIE 455
E++S + L +V + S+++ + +T F+SK + Q + D++ ++
Sbjct: 405 EPEEMDS-QTLLDEVMDFDSSIKEALGQMTDGR----FISKAMAAYPQAPYSDMVFIPLQ 459
Query: 456 SYNSGKR 462
Y +R
Sbjct: 460 LYLDARR 466
>gi|147844279|emb|CAN80033.1| hypothetical protein VITISV_007071 [Vitis vinifera]
Length = 693
Score = 281 bits (719), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 144/295 (48%), Positives = 176/295 (59%), Gaps = 85/295 (28%)
Query: 50 VSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVIT 109
+S WK +DSR GITR+MI PSW VLK+L+ +GF+AYLVGGCVRDL+L + PKDFDVIT
Sbjct: 1 MSKWKKLDSRTFGITRSMISSPSWFVLKLLQREGFEAYLVGGCVRDLILNKTPKDFDVIT 60
Query: 110 TANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGC 169
TA LKQI+++F R++I+GRRFPICRVH+KGSVIEVSSFETVAKHGE KE V SQ+P GC
Sbjct: 61 TAKLKQIKKRFRRAQIVGRRFPICRVHVKGSVIEVSSFETVAKHGEEKEKVSFSQMPSGC 120
Query: 170 DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCA 229
DE D RWRNS
Sbjct: 121 DESDFNRWRNS------------------------------------------------- 131
Query: 230 RILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
R+LRGLRIAARLGLSF ++ +TA+ SL+SS++ LDK
Sbjct: 132 RMLRGLRIAARLGLSFSRETETAIRSLASSVKSLDK------------------------ 167
Query: 290 RYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVG 344
AYL QQ + +A++ MM M+LFFNLDKLV+CDRP D +LW G
Sbjct: 168 ------------GAYLAQQTTEPSAQHSMMFMKLFFNLDKLVTCDRPCDCSLWAG 210
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 175/332 (52%), Gaps = 77/332 (23%)
Query: 342 WVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEI 401
WVGLL+FH ALV+ PQDA VVW +SVLYHGKW EGVKFAR A P+ F PEI +
Sbjct: 343 WVGLLAFHMALVNKPQDASVVWTLSSVLYHGKWTEGVKFARKHALAPISFSPEILVECDS 402
Query: 402 ESDEQLAVKVTELALSVQDC------VNDLTKASSGY------------------VFVSK 437
+SDE+LA +V+ELA VQDC DL+ + S Y VFV K
Sbjct: 403 KSDEELAERVSELASLVQDCAISSTKTGDLSASMSDYPDYPCTGLLIWLKNVVLQVFVQK 462
Query: 438 KIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTISGGLV- 496
++ V IF+VLVN IESY G+ S IDY +LGKG+L ETRFVLGK+I+ T+S LV
Sbjct: 463 RMAERVAHIFNVLVNGIESYEEGRESPDIDYYLLGKGDLRETRFVLGKVIMDTMSSELVQ 522
Query: 497 AGEEEIDE---------EEMPEVLDKD------SVENYL--AKKNRKRGLQPSSAELKLK 539
G E ++E E+ PE L++D V +L AK+++KR L + EL+ +
Sbjct: 523 MGTEVLEEKNQLHMSYNEQKPEALEQDCHPILYEVVKHLVVAKEDKKRSLSSFNPELQQE 582
Query: 540 TAKKCKWTE-KFSSINHELS--------------MNKEDVVPKEEVEEI----------- 573
KK K + +F + E++ K+++ E+ +E+
Sbjct: 583 RGKKQKLVDIEFDPLEQEIAKENQKEKNNKHQEIAKKQEMAENEQHQEMAKKHLKMVGKE 642
Query: 574 ---------HKAVKNCQLPDKELKVRTTEKHK 596
HK KN LP ++L + E+HK
Sbjct: 643 NLQKSAKRQHKVAKNSHLPQQKLARKQNEQHK 674
>gi|8809691|dbj|BAA97232.1| unnamed protein product [Arabidopsis thaliana]
Length = 499
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 171/461 (37%), Positives = 255/461 (55%), Gaps = 56/461 (12%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
WK ++S++LG++ +MI + + VL LKS+G YLVGGCVRDL+L+R PKDFD++T+A
Sbjct: 64 WKQLNSKDLGLSSSMIAKSTRKVLNGLKSKGHDVYLVGGCVRDLILKRTPKDFDILTSAE 123
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCD-E 171
L+ EVSSF T A++ + T + G D +
Sbjct: 124 LR----------------------------EVSSFSTSAQNS-SRNTRTECKESSGSDGD 154
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D +R N + RDFTIN L FDP+ +YDY G+ D+R K+RT+I A SF +DCARI
Sbjct: 155 EDCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRTVIHAGTSFHQDCARI 214
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +RIAARLG K+ + +LS ++RLDK RI+ME+NYML+YG+AE+S+ LL ++
Sbjct: 215 LRAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYMLAYGSAEASLRLLWKF 274
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQA 351
+L+ILLP AAYL + + + ML+ LF NLDKL++ DRP +LW+ +L+FH+A
Sbjct: 275 GILEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRPCHSSLWIAILAFHKA 334
Query: 352 LVSDPQDAFVVWVFASVLYH-GKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVK 410
L P+ VV F+ +++ G E V+ + + K S F +E +E L +
Sbjct: 335 LADKPRSPIVVAAFSLAVHNCGDILEAVEITKKITRPHDK-----SFFELVEPEENLDFQ 389
Query: 411 -----VTELALSVQDCVNDLT------KASSGY--------VFVSKKIERNVQQIFDVLV 451
V +L S++D +N +T KA S Y VF+ ++ +IFD +
Sbjct: 390 TLLDEVMDLDASIEDALNQMTDAYFISKAMSAYPQAPYSDLVFIPLQLYLRAGRIFDCVK 449
Query: 452 NSIESYN-SGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
N K+ I+Y L G E R V +++ T+
Sbjct: 450 NEETRIGFEAKQGSKIEYGSLNSGYFPEIRHVFARVVFDTV 490
>gi|222628784|gb|EEE60916.1| hypothetical protein OsJ_14629 [Oryza sativa Japonica Group]
Length = 555
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 160/410 (39%), Positives = 229/410 (55%), Gaps = 36/410 (8%)
Query: 107 VITTANLKQIRRQFHRSEII-GRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQI 165
V+T L +++ F S +I GRRFPIC V+ S++EVSSF T A+ G + S+
Sbjct: 144 VLTLIFLAEVKDTFSGSAVIVGRRFPICHVYENNSIVEVSSFNTYAR-GSTSNQIYTSKS 202
Query: 166 PYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFT 225
P+ C + D +RW+N RDFTIN L F+P+ KIYDY GI D++ K+RT+IPA SF
Sbjct: 203 PH-CSKNDYIRWKNCQGRDFTINGLMFNPYAEKIYDYFGGIEDIKKAKVRTVIPAGTSFQ 261
Query: 226 EDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285
EDCARILR +RIAARLG +F K+ + +L+ S+ RLDK RI+ME+NYML+YG+AE+S+
Sbjct: 262 EDCARILRAIRIAARLGFNFPKETAYYVRTLACSVARLDKGRILMEINYMLAYGSAEASL 321
Query: 286 CLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGL 345
LL R+ LL+ LLPF AAY K + ML+ LF LD ++ +RP +LW+ +
Sbjct: 322 RLLWRFGLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISI 381
Query: 346 LSFHQALVSDPQDAFVVWVFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSE----- 400
L+ H+ALV P+D VV FA LY G + A D K + +GFSE
Sbjct: 382 LALHEALVRQPRDPLVVATFALALYLGG---DMSLALDIGKSINR--QHNTGFSELLEPQ 436
Query: 401 IESDEQLAVKVTELALSVQDCVNDLTKASSGYVFVSKKIERNVQ-----------QIFDV 449
+ D+ L +V LA+S++ + ++T FV+ + + Q Q +
Sbjct: 437 VWDDKHLVGEVQSLAVSMRRALTEMTDE----YFVANAMAKIPQAPSSDLVFIPLQAYLK 492
Query: 450 LVNSIESYNSGKRSHI--------IDYDMLGKGNLVETRFVLGKIILKTI 491
++ IE GK+ H IDY L G E R V ++ T+
Sbjct: 493 VLKLIECVQHGKKEHGYEPKRDGNIDYHDLSYGTPAEVRNVFTLVVFNTL 542
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/104 (50%), Positives = 70/104 (67%), Gaps = 2/104 (1%)
Query: 125 IIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRD 184
I+GRRFPIC V+ S++EVSSF T A+ G + S+ P+ C + D +RW+N RD
Sbjct: 37 IVGRRFPICHVYENNSIVEVSSFNTYAR-GSTSNQIYTSKSPH-CSKNDYIRWKNCQGRD 94
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
FTIN L F+P+ KIYDY GI D++ K+RT+IPA SF EDC
Sbjct: 95 FTINGLMFNPYAEKIYDYFGGIEDIKKAKVRTVIPAGTSFQEDC 138
>gi|326518838|dbj|BAJ92580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/307 (43%), Positives = 191/307 (62%), Gaps = 12/307 (3%)
Query: 125 IIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRD 184
I+GRRFPI VH S++EVSSF T + G + + S+ P+ C + D +RW+N RD
Sbjct: 11 IVGRRFPIVHVHDNNSIVEVSSFNTYVRGSSGNQ-MPASKSPH-CSKNDYLRWKNCQGRD 68
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN L F+P+ KIYDY GI D++ K+RT+IPA SF EDCARILR +RIAARLG S
Sbjct: 69 FTINGLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAATSFHEDCARILRAIRIAARLGFS 128
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
F K+ + +L+ S+ RLDK R++ME+NYML+YG+AE+S+ LL R+ LL+ LLPF AAY
Sbjct: 129 FPKETAYYVRNLACSVARLDKGRLLMEVNYMLAYGSAEASLRLLWRFGLLEHLLPFQAAY 188
Query: 305 LDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWV 364
K ML+ LF LD ++ +RP +LW+ +L+FH+ALV P+D VV
Sbjct: 189 FSSTLFKRKDNGTNMLLVLFSKLDSFLAPNRPCHNSLWISILAFHEALVRKPRDPLVVAT 248
Query: 365 FASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSE-----IESDEQLAVKVTELALSVQ 419
FA +Y G + A D + + +GFSE + + L +V +LA+S++
Sbjct: 249 FALAVYLGG---DLPLAVDIGQSINR--QHDAGFSELLEPRVRGKKGLLAEVKDLAISMR 303
Query: 420 DCVNDLT 426
+ ++T
Sbjct: 304 QALTEMT 310
>gi|168013056|ref|XP_001759217.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689530|gb|EDQ75901.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/333 (42%), Positives = 196/333 (58%), Gaps = 43/333 (12%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
G+ +IP SW VL L G+++YLVGG VRD+L+++VPKDFD++TTA KQ++ F
Sbjct: 87 GLRDKLIPASSWRVLTRLLDAGYRSYLVGGSVRDMLVKQVPKDFDILTTAEPKQVKAAFS 146
Query: 122 -RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK----ETVLLSQIPYGCDEIDLVR 176
R I+GRRFP+C V +V+EVSSF T G K E V+ ++ G E D R
Sbjct: 147 GRCIIVGRRFPVCHVTSLNTVVEVSSFST--NSGNIKRITYEPVVGTE---GWSEDDFSR 201
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
W NS+ RDFT+N + +DPF IYDY G+ DLR K+RT+IPA SF ED ARILR +R
Sbjct: 202 WDNSLRRDFTVNGIMYDPFKCIIYDYVGGLRDLRRCKIRTVIPALESFEEDSARILRAIR 261
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
IAARL SF A+ L SSI L+K+R+ +E+N M++YG++E S+ LL RY +L+
Sbjct: 262 IAARLEFSFATSTANAIRQLKSSILTLNKTRLQLEVNTMMAYGSSERSVRLLWRYGVLEY 321
Query: 297 LLPFHA-------------AYLDQQAGK-------ITAENPMMLMRLFF----------- 325
LLPF A L +QA + A++ +++ L F
Sbjct: 322 LLPFQARQHFGLLARYFSNTNLKRQARRSDILLIIFKAQSVCLVIYLVFFRSAFVAIQKL 381
Query: 326 --NLDKLVSCDRPADYTLWVGLLSFHQALVSDP 356
NLDK+ + +RP LWV +L+FH ALV P
Sbjct: 382 LANLDKVTAPNRPCHGGLWVAILAFHLALVERP 414
>gi|326509581|dbj|BAJ87006.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 391
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 214/385 (55%), Gaps = 29/385 (7%)
Query: 128 RRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTI 187
RRFPI VH S++EVSSF T + G + + S+ P+ C + D +RW+N RDFTI
Sbjct: 1 RRFPIVHVHDNNSIVEVSSFNTYVRGSSGNQ-MPASKSPH-CSKNDYLRWKNCQGRDFTI 58
Query: 188 NSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCK 247
N L F+P+ KIYDY GI D++ K+RT+IPA SF EDCARILR +RIAARLG SF K
Sbjct: 59 NGLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAATSFHEDCARILRAIRIAARLGFSFPK 118
Query: 248 DIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQ 307
+ + +L+ S+ RLDK R++ME+NYML+YG+AE+S+ LL R+ LL+ LLPF AAY
Sbjct: 119 ETAYYVRNLACSVARLDKGRLLMEVNYMLAYGSAEASLRLLWRFGLLEHLLPFQAAYFSS 178
Query: 308 QAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFAS 367
K ML+ LF LD ++ +RP +LW+ +L+FH+ALV P+D VV FA
Sbjct: 179 TLFKRKDNGTNMLLVLFSKLDSFLAPNRPCHNSLWISILAFHEALVRKPRDPLVVATFAL 238
Query: 368 VLY-HGKWKEGVKFARDRAKEPVKFVPEISGFSE-----IESDEQLAVKVTELALSVQDC 421
+Y G V + ++ +GFSE + + L +V +LA+S++
Sbjct: 239 AVYLGGDLPLAVDIGQSINRQ------HDAGFSELLEPRVRGKKGLLAEVKDLAISMRQA 292
Query: 422 VNDLT--------------KASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHI-I 466
+ ++T SS VF+ + V ++ + + + + +S I
Sbjct: 293 LTEMTDEYYVANAMAKIPQAPSSDLVFIPLQAYLKVLKLVERVQHGKKEIGYEPKSDGNI 352
Query: 467 DYDMLGKGNLVETRFVLGKIILKTI 491
DY L G E R + ++ TI
Sbjct: 353 DYYNLANGTPAEVRNLFTLVVFDTI 377
>gi|307136008|gb|ADN33864.1| poly(A) polymerase [Cucumis melo subsp. melo]
Length = 439
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 154/462 (33%), Positives = 223/462 (48%), Gaps = 97/462 (20%)
Query: 52 NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTA 111
NWK S +LGI +MIP+P+ VL LK G++ YLVGGCVRDL+L R PKDFD+IT+A
Sbjct: 50 NWKRFSSNHLGIVTSMIPKPTRKVLNGLKKAGYEVYLVGGCVRDLILDRPPKDFDIITSA 109
Query: 112 NLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDE 171
LK++ R F EI+GRRFPIC VHI G+++EVSSF T +K + + C+E
Sbjct: 110 QLKEVSRIFLWCEIVGRRFPICHVHIDGTIVEVSSFSTSSKPFDRHLNSAAIEKSMNCEE 169
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
ID VRW+N + RDFTIN + +DP+ N +YDY G+ D+R K R
Sbjct: 170 IDFVRWKNCLQRDFTINGMMYDPYNNVVYDYLGGMEDIRQAKAR---------------- 213
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
+ ME+NY+LSYG+AE+S+ LL +Y
Sbjct: 214 ------------------------------------LQMEMNYLLSYGSAEASLRLLWKY 237
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQA 351
LL+ILLP Q G I E+ FF V + + V +L+ H A
Sbjct: 238 GLLEILLPI-------QIGLIHLES------HFFGFSPGVKRSQTV-LSYRVAVLALHVA 283
Query: 352 LVSDPQDAFVVWVFASVLYH-GKWKEGVKFAR--DRAKEPVKFVPEISGFSEIESDEQLA 408
L P+ VV F +++ G E + A+ +RA + F E+ + +
Sbjct: 284 LSDQPRSPLVVATFGLAVHNGGNMMEAISIAKSINRAHN--------ANFYELLEPQNME 335
Query: 409 VK-----VTELALSVQDCVNDLT--------------KASSGYVFVSKKIERNVQQIFDV 449
V+ V +L SV+ ++ +T +S VF+ + V +IF+
Sbjct: 336 VQALIDEVMDLTTSVKVALHKMTDEHFVSLALESYPQAPASDLVFIPLVVYLKVCKIFEC 395
Query: 450 LVNSIESYNSGKRSHIIDYDMLGKGNLVETRFVLGKIILKTI 491
+V E KR I+Y+ L GN+ E R V +I+ T+
Sbjct: 396 VVEGAERGFVPKRGK-INYECLALGNVPELRHVFARIVFDTV 436
>gi|242042361|ref|XP_002468575.1| hypothetical protein SORBIDRAFT_01g048240 [Sorghum bicolor]
gi|241922429|gb|EER95573.1| hypothetical protein SORBIDRAFT_01g048240 [Sorghum bicolor]
Length = 353
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 187/370 (50%), Gaps = 69/370 (18%)
Query: 137 IKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFL 196
++ SVIE+SSF+TV K+G E V + G D D++RW++S+ RDFT+N LFF+P
Sbjct: 1 MRDSVIEISSFQTVPKYGNRSEAVNYVEELNGSDVRDILRWKDSMRRDFTVNGLFFNPMN 60
Query: 197 NKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSL 256
KIYDY NG+ D+R K+ T+IPA++SF ED
Sbjct: 61 YKIYDYVNGVRDMRKNKVCTVIPAHISFMED----------------------------- 91
Query: 257 SSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAEN 316
A S+ LLR+Y LL ILLPF AAYL Q +++
Sbjct: 92 -----------------------PAGPSVRLLRKYGLLDILLPFQAAYLSDQLKGGSSDR 128
Query: 317 PMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKE 376
+MLM+L NLD+L+S DRP +LW+ LL FH ALV PQD V+ FA++LY G W+
Sbjct: 129 DLMLMKLLANLDRLLSADRPCHSSLWLALLVFHSALVISPQDTLVIRAFAAMLYFGTWET 188
Query: 377 GVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLT---------- 426
VKF + E V F PE G S + D+ L + + LA V V+ LT
Sbjct: 189 TVKFLEEVGPE-VSFAPETMGPSRTKLDD-LMEQTSHLASLVNSSVDTLTCLHGLEQSLA 246
Query: 427 -----KASSGYVFVSKKIERNVQQIFDVLVNSIESYNSGKRSHIIDYDMLGKGNLVETRF 481
SG V S + + IF+ L + + SY+ + IDY L G+ E RF
Sbjct: 247 RFSEPPQFSGVVLTSNNDRKRLSVIFEGLASDLLSYDERRGMRGIDYWSLKHGDPAEVRF 306
Query: 482 VLGKIILKTI 491
VLGK+I+ T+
Sbjct: 307 VLGKVIMDTM 316
>gi|440577418|emb|CCI55441.1| PH01B031C15.24 [Phyllostachys edulis]
Length = 736
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/240 (47%), Positives = 144/240 (60%), Gaps = 53/240 (22%)
Query: 83 GFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQI-RRQFHRSEIIGRRFPICRVHIKGSV 141
GF AYLVGGCVRDLLL+R PKDFDVITTA+L+QI RR F R IIGRRFPIC++++ GS+
Sbjct: 21 GFDAYLVGGCVRDLLLKRAPKDFDVITTASLQQIKRRVFKRCIIIGRRFPICQINMHGSI 80
Query: 142 IEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYD 201
IEVSSF T + +G E V S G DE D++RW+NS+ RDFTINSLFF+P +++IYD
Sbjct: 81 IEVSSFRTNDNYVKGSEEVDCSDDLNGYDEGDILRWKNSMKRDFTINSLFFNPSIHRIYD 140
Query: 202 YANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIE 261
Y NG+ D+R K R ++
Sbjct: 141 YVNGVRDVRNNKTRLMM------------------------------------------- 157
Query: 262 RLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLM 321
E+ YMLS+GAAESS+ LLR+Y LL ILLPF AAYL Q +++ +MLM
Sbjct: 158 ---------EMKYMLSHGAAESSVRLLRKYGLLDILLPFQAAYLSDQIKGKSSDRDLMLM 208
>gi|307104614|gb|EFN52867.1| hypothetical protein CHLNCDRAFT_58740 [Chlorella variabilis]
Length = 911
Score = 208 bits (530), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/307 (38%), Positives = 167/307 (54%), Gaps = 36/307 (11%)
Query: 68 IPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIG 127
I +P+W+VL L++ G +AY+VGG +RDLLL PKD+D++TTA L QI+R F R I+G
Sbjct: 270 ISRPAWLVLSRLRAAGHEAYVVGGTIRDLLLGGTPKDYDLLTTAELHQIKRLFGRCNIVG 329
Query: 128 RRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWR-NSIHRD-- 184
R FP+C+VH +G++IEVSSF T A L IP + R + + R
Sbjct: 330 RSFPVCQVHAEGTMIEVSSFTTNAD---------LRLIPADASTHMIGRQKPKRVARQEA 380
Query: 185 ----------------FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
FT+N L +DPF ++D G++D + +LRT+ P SF D
Sbjct: 381 GATWAAARADNAARRDFTVNGLLYDPFSRLLFDSVGGVADCQARRLRTICPPQQSFAADP 440
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
ARILRG+R+AAR GL + M +++I L + R+ MEL +L YGA+E S+ L+
Sbjct: 441 ARILRGVRLAARAGLELEPETAAEMEEAAATIGLLPQGRLQMELGSLLGYGASERSLALM 500
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPM--------MLMRLFFNLDKLVSCDRPADYT 340
R LL +LLP HA YL + P +L L LD+ V +P D +
Sbjct: 501 WRLGLLDMLLPQHALYLKRHRVPRAPRAPSSKRRHKRDLLFELAGELDRHVHPQKPVDPS 560
Query: 341 LWVGLLS 347
+WV LL+
Sbjct: 561 VWVALLA 567
>gi|4914379|gb|AAD32915.1| putative poly(A) polymerase [Arabidopsis thaliana]
Length = 241
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 134/190 (70%), Gaps = 19/190 (10%)
Query: 81 SQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGS 140
+ GF AYLVGGCVRDL+L RVPKD+DVITTA+LKQIRR FHR+++IG+RFPIC V + GS
Sbjct: 16 NSGFDAYLVGGCVRDLILNRVPKDYDVITTADLKQIRRLFHRAQVIGKRFPICHVWMGGS 75
Query: 141 VIEVSSFETVA-----------KHGEGKETVL-----LSQIPYGCDEIDLVRWRNSIHRD 184
+IEVSSF+TVA K G +T L ++ G D D RWRNS+ RD
Sbjct: 76 IIEVSSFDTVAHSDSDLEKSKEKSGVSLDTKANKNNSLFKMYSGWDIKDCKRWRNSLQRD 135
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS-FTEDCARILRGLRIAARLGL 243
FTINSLF++PF IYDYANG+ DL LK + L LS F+ + ARILRGLRIAARLGL
Sbjct: 136 FTINSLFYNPFDFTIYDYANGMEDLTDLKFKVL--TILSWFSPNTARILRGLRIAARLGL 193
Query: 244 SFCKDIDTAM 253
S KD+ TA+
Sbjct: 194 SLSKDVKTAI 203
>gi|414864627|tpg|DAA43184.1| TPA: hypothetical protein ZEAMMB73_451476, partial [Zea mays]
Length = 248
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/164 (57%), Positives = 120/164 (73%), Gaps = 1/164 (0%)
Query: 48 VDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDV 107
VD S+WK DSR +GI I +W VLK L+ +GFQAYLVGGCVRDLLL+RVPKDFDV
Sbjct: 68 VDPSSWKHFDSRAVGIKPGAIHTDAWAVLKKLRREGFQAYLVGGCVRDLLLKRVPKDFDV 127
Query: 108 ITTANLKQIRRQ-FHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIP 166
ITTA+L+Q+++ F RS I+G+RFPIC + ++ SVIE+SSF TVA +G E V
Sbjct: 128 ITTASLEQLKKNIFRRSRIVGKRFPICLLKMRDSVIEISSFRTVANYGNRSEVVDYVAEL 187
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLR 210
G D D++RW++S+ RDFTIN LFF+P KIYDY NG+ D+R
Sbjct: 188 NGSDVRDILRWKDSMRRDFTINGLFFNPMNCKIYDYVNGVRDMR 231
>gi|414587500|tpg|DAA38071.1| TPA: hypothetical protein ZEAMMB73_877949 [Zea mays]
Length = 329
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/320 (37%), Positives = 173/320 (54%), Gaps = 25/320 (7%)
Query: 192 FDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDT 251
F+P+ KIYDY GI D++ K+RT+IPA SF EDCARILR +RIAARLG SF K+
Sbjct: 2 FNPYSEKIYDYLGGIEDIKKAKVRTVIPAGTSFQEDCARILRAIRIAARLGFSFPKETAY 61
Query: 252 AMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGK 311
+ +L+ S+ RLDK+RI+ME+NYML+YG+AE+S+ LL R+ LL+ LLPF AAY K
Sbjct: 62 YVRTLACSVARLDKARILMEMNYMLAYGSAEASLRLLWRFGLLEHLLPFQAAYFSSTRFK 121
Query: 312 ITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYH 371
+ ML+ LF LD ++ +RP +LW+ LL+FH+AL P D +V FA Y
Sbjct: 122 RKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISLLAFHEALARKPCDPLIVATFALAFYL 181
Query: 372 GKWKEGVKFARDRAKEPVKFVPEISGFSE-----IESDEQLAVKVTELALSVQDCVNDLT 426
G + A D K + +GF E + +D+ LA +V A ++ + ++T
Sbjct: 182 GG---DMSLAVDIGKSINR--QHDTGFRELLEPKVWTDKHLAGEVQSFAALMKQALTEMT 236
Query: 427 --------------KASSGYVFVSKKIERNVQQIFD-VLVNSIESYNSGKRSHIIDYDML 471
SS VF+ + V + + V E + KR +I+Y L
Sbjct: 237 DEYHVANAMAKIPQAPSSDLVFIPLQAYLKVLKFIECVQYGKKERGHEPKRDGMINYHNL 296
Query: 472 GKGNLVETRFVLGKIILKTI 491
G E R + ++ T+
Sbjct: 297 SNGTHAEIRNLFTLVVFDTL 316
>gi|308081100|ref|NP_001183670.1| uncharacterized protein LOC100502264 [Zea mays]
gi|238013774|gb|ACR37922.1| unknown [Zea mays]
Length = 215
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 104/143 (72%), Gaps = 1/143 (0%)
Query: 48 VDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDV 107
VD S+WK DSR +GI I +W VLK L+ +GFQAYLVGGCVRDLLL+RVPKDFDV
Sbjct: 68 VDPSSWKHFDSRAVGIKPGAIHTDAWAVLKKLRREGFQAYLVGGCVRDLLLKRVPKDFDV 127
Query: 108 ITTANLKQIRRQ-FHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIP 166
ITTA+L+Q+++ F RS I+G+RFPIC + ++ SVIE+SSF TVA +G E V
Sbjct: 128 ITTASLEQLKKNIFRRSRIVGKRFPICLLKMRDSVIEISSFRTVANYGNRSEVVDYVAEL 187
Query: 167 YGCDEIDLVRWRNSIHRDFTINS 189
G D D++RW++S+ RDFTIN
Sbjct: 188 NGSDVRDILRWKDSMRRDFTING 210
>gi|300113450|ref|YP_003760025.1| poly(A) polymerase [Nitrosococcus watsonii C-113]
gi|299539387|gb|ADJ27704.1| poly(A) polymerase [Nitrosococcus watsonii C-113]
Length = 428
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 147/274 (53%), Gaps = 9/274 (3%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+RA I +P+ VL LK GF AYLVGGCVRDLLL R PKDFDV T A +QIR F
Sbjct: 16 ISRANISEPALNVLYRLKKAGFSAYLVGGCVRDLLLGREPKDFDVTTDARPEQIRDLFRS 75
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIH 182
++GRRF + + +IE ++F + G + ++S YG E D WR
Sbjct: 76 CRLVGRRFRLAHLRFGREIIETATFRGPPEEGLSENGRIVSDNVYGTLEQDA--WR---- 129
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDF++N+L++D + DY G+ DL +LR + + ED R+LR +R AA+LG
Sbjct: 130 RDFSVNALYYDIRDFSVVDYTGGMEDLEAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLG 189
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
+ D + + L+SS++ + +R+ E+ + G A + LLRR+NL + L P
Sbjct: 190 FTLHADSEAPIWELASSLQEIPSARLFEEILKLFLGGCAVQTFELLRRFNLFQWLFPQTE 249
Query: 303 AYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
+ L+++ + L + N D ++ +P
Sbjct: 250 SCLEEEEQGFPR---IFLAQALSNTDARIAAGKP 280
>gi|394988100|ref|ZP_10380938.1| hypothetical protein SCD_00502 [Sulfuricella denitrificans skB26]
gi|393792558|dbj|GAB70577.1| hypothetical protein SCD_00502 [Sulfuricella denitrificans skB26]
Length = 457
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 153/302 (50%), Gaps = 21/302 (6%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GIT + + +K L+ GF+A++VGG VRDLLL R PKDFDV T A+ ++R F
Sbjct: 29 GITADQLTPCALKTVKALQQAGFKAFVVGGAVRDLLLGREPKDFDVATDADPDEVRHLFR 88
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA---------KHGEGKETVLLSQIPYGCDEI 172
RS IIGRRF I V IEVS+F TVA + + + +L +G
Sbjct: 89 RSRIIGRRFRIVHVMCGPETIEVSTFRTVAVATNNDSDDRQTDQQSGRILRDNVFGSQVE 148
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +R RDFTIN+L++DP +I+DY NG++DL+ +R + + ED R+L
Sbjct: 149 DAMR------RDFTINALYYDPVSQEIWDYHNGVADLKAGVMRIIGDPAQRYREDPVRML 202
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R AA+LGL + L+ +E + +R+ E+ +L G A SI LLR+
Sbjct: 203 RAVRFAAKLGLKLDPAAIKPIRELAELLEDVPAARLFDEMLKLLFSGHAVQSILLLRKKG 262
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
L LLP L+Q G+ +M D+ + +P L +H+ L
Sbjct: 263 LHHGLLPMLDVILEQPMGE------RFVMLALAKTDQRIEEGKPVSPAYLFAALLWHEVL 316
Query: 353 VS 354
V+
Sbjct: 317 VA 318
>gi|46446942|ref|YP_008307.1| Poly(A) polymerase [Candidatus Protochlamydia amoebophila UWE25]
gi|46400583|emb|CAF24032.1| putative Poly(A) polymerase [Candidatus Protochlamydia amoebophila
UWE25]
Length = 424
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 102/259 (39%), Positives = 141/259 (54%), Gaps = 11/259 (4%)
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
KT +++ GI A+I + + VL+ L+ GF AYLVGG VRDLLL+RVPKDFD+ T+A
Sbjct: 4 KTYFAKDHGIDPALIDRDALYVLERLRHAGFTAYLVGGSVRDLLLKRVPKDFDISTSARP 63
Query: 114 KQIRRQFHRSEI-IGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEI 172
+QI+ F R I IGRRF + + +IEVS+F T GE ++L +G E
Sbjct: 64 EQIKAIFQRQCILIGRRFRLAHIRFGHKIIEVSTFRT----GENDSGLILHDNEWGTPEE 119
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D++R RDFTIN LF+D + I DY NG D++ LRT+ F +D R+L
Sbjct: 120 DVLR------RDFTINGLFYDSSNHSIIDYVNGWEDVQKHLLRTIGEPEKRFKQDPVRLL 173
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R L+ AR + + A+H I + +RI+ E+ ML GA+ I LL Y
Sbjct: 174 RLLKFHARYNFKIEEQTEQAIHVCRIEITKSSPARILEEILRMLESGASAPFIKLLAEYG 233
Query: 293 LLKILLPFHAAYLDQQAGK 311
+L IL P L GK
Sbjct: 234 ILNILFPSLTQLLKTTYGK 252
>gi|418465710|ref|ZP_13036643.1| poly(A) polymerase [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359755745|gb|EHK89908.1| poly(A) polymerase [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 488
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 159/294 (54%), Gaps = 21/294 (7%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
++ + GIT MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +
Sbjct: 52 SIKASTHGITPRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPE 111
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQ 164
QI+ F R ++GRRF + V +IEV++F E +AK E E +LL
Sbjct: 112 QIQAIFQRQCRLVGRRFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSE--EGMLLRD 169
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
YG E D R RDF++N+L+++P N + DY NGI DL+ KLR + +
Sbjct: 170 NVYGTLEQDAER------RDFSVNALYYNPQDNTLKDYFNGIEDLKNGKLRLIGDPVTRY 223
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R A+L + K +T + LS ++ + +R+ E +L G+ +
Sbjct: 224 QEDPVRMLRSIRFMAKLDMFLDKPSETPIKELSHLLKNIPPARLFEESLKLLQGGSGVKT 283
Query: 285 ICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPAD 338
LLR+Y L + L P + Y ++ + + M++R + D+ V+ P +
Sbjct: 284 YRLLRQYGLFEQLFPLLSNYFTEREDSMAEK---MILRALTSTDERVADKLPVN 334
>gi|443473699|ref|ZP_21063721.1| Poly(A) polymerase [Pseudomonas pseudoalcaligenes KF707]
gi|442904573|gb|ELS29550.1| Poly(A) polymerase [Pseudomonas pseudoalcaligenes KF707]
Length = 468
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 142/271 (52%), Gaps = 23/271 (8%)
Query: 47 EVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFD 106
EV SN ++ R GI+R + +V+ L+ G+QAYLVGGCVRDLLL PKDFD
Sbjct: 24 EVLGSNQHSL--RRTGISRNAV-----IVVDRLQKAGYQAYLVGGCVRDLLLDLRPKDFD 76
Query: 107 VITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE-------- 158
V T A +Q+R +F + +IGRRF + V +IEV++F GE +E
Sbjct: 77 VATNATPEQVRAEFRNARVIGRRFKLAHVQFGREIIEVATFRANHPQGEEEEDNNQAARN 136
Query: 159 --TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
+L YG E D R RDFTIN+L++DP +I DYA+G+ D+R +R
Sbjct: 137 ESGRILRDNVYGSLEDDAQR------RDFTINALYYDPTTERILDYAHGVHDIRNRLVRL 190
Query: 217 LIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ + ED R+LR R AA+LG K + L+ + + +R+ E+ +
Sbjct: 191 IGIPEQRYQEDPVRMLRAARFAAKLGFEIEKHSAAPIRQLAPLLRDIPSARLFDEVLKLF 250
Query: 277 SYGAAESSICLLRRYNLLKILLPFHAAYLDQ 307
G AE + LL +Y+L L P AA L++
Sbjct: 251 LSGKAERTFDLLVQYDLFAPLFPASAAALER 281
>gi|416051543|ref|ZP_11577591.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347992976|gb|EGY34353.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 488
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 146/264 (55%), Gaps = 18/264 (6%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
++ + GIT MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +
Sbjct: 52 SIKASTHGITPRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPE 111
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQ 164
QI+ F R ++GRRF + V +IEV++F E +AK E E +LL
Sbjct: 112 QIQAIFQRQCRLVGRRFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSE--EGMLLRD 169
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
YG E D R RDF++N+L+++P N + DY NGI DL+ KLR + +
Sbjct: 170 NVYGTLEQDAER------RDFSVNALYYNPQDNTLKDYFNGIEDLKSGKLRLIGDPVTRY 223
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R A+L + K +T + LS ++ + +R+ E +L G+ +
Sbjct: 224 QEDPVRMLRSIRFMAKLDMFLDKPSETPIKELSHLLKNIPPARLFEESLKLLQGGSGVKT 283
Query: 285 ICLLRRYNLLKILLPFHAAYLDQQ 308
LLR+Y L + L P + Y ++
Sbjct: 284 YRLLRQYGLFEQLFPLLSNYFTER 307
>gi|319778440|ref|YP_004129353.1| poly(A) polymerase [Taylorella equigenitalis MCE9]
gi|317108464|gb|ADU91210.1| Poly(A) polymerase [Taylorella equigenitalis MCE9]
gi|399115842|emb|CCG18645.1| poly(A) polymerase [Taylorella equigenitalis 14/56]
Length = 451
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 130/239 (54%), Gaps = 6/239 (2%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R ++ + + V ++L+ G+Q+++VGG VRDL+L + PKDFDV T A +I+ F
Sbjct: 28 GIERRLVSRNAIKVCEVLRDHGYQSFIVGGAVRDLMLGKAPKDFDVATNATPLEIKPLFR 87
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
R+ IIGRRF + V +IE S+F T E + +L YG E D+ R
Sbjct: 88 RALIIGRRFKLVHVVFGPEIIETSTFRTSGSQPEDNDGRILFDNNYGTIETDVDR----- 142
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFTIN+L++DP +YD+ NGI D++ L++R + + ED R+LR +R A +L
Sbjct: 143 -RDFTINALYYDPISETVYDFHNGIKDIKNLQIRMIGDPEKRYREDPVRMLRAIRFAGKL 201
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
G F + LS I + SRI E +L+ G + I LR+ L K LP
Sbjct: 202 GAKFAPSTYEPIKRLSHLISNVPDSRIFDETYKLLTCGDSIYCIQQLRQLQLDKGTLPL 260
>gi|162449988|ref|YP_001612355.1| Poly(A) polymerase [Sorangium cellulosum So ce56]
gi|161160570|emb|CAN91875.1| Poly(A) polymerase [Sorangium cellulosum So ce56]
Length = 416
Score = 155 bits (391), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 148/277 (53%), Gaps = 14/277 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ L GFQAYLVGGCVRDLLL R PKDFDV T+A +++R F S IIGRRF +
Sbjct: 44 VVRRLVRHGFQAYLVGGCVRDLLLDRRPKDFDVATSARPEEVRELFRNSRIIGRRFRLVH 103
Query: 135 VHIKGS-VIEVSSFETVAKH--GEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLF 191
V +G VIEV++F K +G E ++ S +G V +++ RDF IN+LF
Sbjct: 104 VLFQGGKVIEVATFRRNPKEDSDDGSELLIRSDNAFG------VAHEDALRRDFRINALF 157
Query: 192 FDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDT 251
+D +I D+ G+ D+R + T+ F ED RILR L+ A RLG + D+
Sbjct: 158 YDVEARQILDWVGGMEDVRRQVVHTIGDPETRFREDPIRILRALKFAGRLGFAITPDVYD 217
Query: 252 AMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGK 311
A+ ++ + R+ E+ +L G A +I L +L +LLP +A L G
Sbjct: 218 AVVYCRDALALAARPRLSEEILRLLRGGQARRTIYLAWETGVLDVLLPEVSALLYDDRGD 277
Query: 312 ITAENP-MMLMRLFFNLDKLVSCDRPADYT-LWVGLL 346
+ P L R+ +D+ + DRP D T LW LL
Sbjct: 278 ---DGPGQRLWRVLDYVDRRTAADRPLDDTVLWTLLL 311
>gi|315634141|ref|ZP_07889430.1| poly(A) polymerase [Aggregatibacter segnis ATCC 33393]
gi|315477391|gb|EFU68134.1| poly(A) polymerase [Aggregatibacter segnis ATCC 33393]
Length = 485
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 152/285 (53%), Gaps = 21/285 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GIT M + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F
Sbjct: 59 GITPRMFNRNALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQ 118
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDE 171
R ++GRRF + V +IEV++F E +AK E E +LL YG E
Sbjct: 119 RQCRLVGRRFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSE--EGMLLRDNVYGTLE 176
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF++N+L+++P N + DY NGI DL+ KLR + + ED R+
Sbjct: 177 QDAER------RDFSVNALYYNPQDNTLKDYFNGIEDLKNGKLRLIGDPVTRYQEDPVRM 230
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + + SL+ ++ + +R+ E +L G + LLR+Y
Sbjct: 231 LRSIRFMAKLEMFLDKPSEAPIKSLAHLLKNIPPARLFEESLKLLQSGHGVKTYQLLRQY 290
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L + L P Y ++ + + M++R + D+ V+ P
Sbjct: 291 GLFEQLFPLLPTYFTEREDSMAEK---MILRALISTDERVADKLP 332
>gi|359450410|ref|ZP_09239851.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20480]
gi|358043763|dbj|GAA76100.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20480]
Length = 473
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/352 (31%), Positives = 180/352 (51%), Gaps = 37/352 (10%)
Query: 34 QMCREMCSDSFNQE-VDVSNWKTVDSRN-LGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
Q CR++ + + E VS+ V +R GI+R + VL LK GF AYLVGG
Sbjct: 19 QFCRQIIGPNTSAENASVSSEPLVITRGEHGISRKQFSPNAIKVLYRLKDGGFDAYLVGG 78
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
C+RD+LL + PKDFDV+T A Q+++ F +IGRRF + + +IEV+ T+
Sbjct: 79 CIRDILLGQQPKDFDVVTNATPDQVKKLFRNCRLIGRRFRLAHIVFGREIIEVA---TMR 135
Query: 152 KHGEGKETVLLSQIPYGCDEIDLVR-------WRNSIHRDFTINSLFFDPFLNKIYDYAN 204
H E E+ +QI E L+R ++ RDF+IN+L++ I+DYAN
Sbjct: 136 GHHEAPESK--NQISQSSTEGQLLRDNVFGSIEEDAERRDFSINALYYSINDFSIHDYAN 193
Query: 205 GISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLD 264
G++ ++ ++ + + ED R+LR +R A +L +S + + + L+S ++ +
Sbjct: 194 GLAAIKAKQIELIGDPETRYREDPVRMLRAVRFATKLDMSIAPNSEKPISELASLLDNIP 253
Query: 265 KSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENP-----MM 319
+R+ E+ + G AE++ +LR+Y L + L P LD KI NP
Sbjct: 254 PARLFEEVLKLFLNGKAEANFLMLRQYGLFRALFP----ALD----KILEANPNGLEQAF 305
Query: 320 LMRLFFNLDKLVSCDR---PA---DYTLWVGLLSFHQALVSDPQ----DAFV 361
+ ++F N DK ++ D+ PA LW LL+ + L ++ Q DAF
Sbjct: 306 VQQMFQNTDKRINADKKVTPAFIFAALLWFPLLAITKKLQAEEQLSEYDAFA 357
>gi|387120137|ref|YP_006286020.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D7S-1]
gi|416045226|ref|ZP_11575294.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|429732809|ref|ZP_19267390.1| polynucleotide adenylyltransferase [Aggregatibacter
actinomycetemcomitans Y4]
gi|347995615|gb|EGY36780.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|385874629|gb|AFI86188.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D7S-1]
gi|429155351|gb|EKX98033.1| polynucleotide adenylyltransferase [Aggregatibacter
actinomycetemcomitans Y4]
Length = 488
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 153/285 (53%), Gaps = 21/285 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GIT MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F
Sbjct: 59 GITPRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAIFQ 118
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDE 171
R ++GRRF + V +IEV++F E +AK E E +LL YG E
Sbjct: 119 RQCRLVGRRFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSE--EGMLLRDNVYGTLE 176
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF++N+L+++P N + DY NGI DL+ KLR + + ED R+
Sbjct: 177 QDAER------RDFSVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRM 230
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + + LS ++ + +R+ E +L G+ + LLR+Y
Sbjct: 231 LRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQY 290
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L + L P Y ++ + + M++R + D+ V+ P
Sbjct: 291 GLFEQLFPLLQNYFTEREDSMAEK---MILRALTSTDERVADKLP 332
>gi|119468903|ref|ZP_01611928.1| poly(A) polymerase I [Alteromonadales bacterium TW-7]
gi|119447555|gb|EAW28822.1| poly(A) polymerase I [Alteromonadales bacterium TW-7]
Length = 475
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 180/354 (50%), Gaps = 39/354 (11%)
Query: 34 QMCREMC---SDSFNQEVDVSNWKTVDSRN-LGITRAMIPQPSWVVLKILKSQGFQAYLV 89
Q CR++ + + N VS+ V +R GI+R + VL LK GF AYLV
Sbjct: 19 QFCRQIIGPNTSAENASASVSSEPLVITRGEHGISRKQFSPNAIKVLYRLKDGGFDAYLV 78
Query: 90 GGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFET 149
GGC+RD+LL + PKDFDV+T A Q+++ F +IGRRF + + +IEV+ T
Sbjct: 79 GGCIRDILLGQQPKDFDVVTNATPDQVKKLFRNCRLIGRRFRLAHIVFGREIIEVA---T 135
Query: 150 VAKHGEGKETVLLSQIPYGCDEIDLVR-------WRNSIHRDFTINSLFFDPFLNKIYDY 202
+ H E E+ +QI E L+R ++ RDF+IN+L++ I+DY
Sbjct: 136 MRGHHEAPESK--NQISQSSTEGQLLRDNVFGSIEEDAERRDFSINALYYSINDFSIHDY 193
Query: 203 ANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIER 262
ANG++ ++ ++ + + ED R+LR +R A +L +S + + + L+S ++
Sbjct: 194 ANGLAAIKAKQIELIGDPETRYREDPVRMLRAVRFATKLDMSIAPNSEKPISELASLLDN 253
Query: 263 LDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENP----- 317
+ +R+ E+ + G AE++ +LR+Y L + L P LD KI NP
Sbjct: 254 IPPARLFEEVLKLFLNGKAEANFLMLRQYGLFRALFP----ALD----KILEANPNGLEQ 305
Query: 318 MMLMRLFFNLDKLVSCDR---PA---DYTLWVGLLSFHQALVSDPQ----DAFV 361
+ ++F N DK ++ D+ PA LW LL+ + L ++ Q DAF
Sbjct: 306 AFVQQMFQNTDKRINADKKVTPAFIFAALLWFPLLAITKKLQAEEQLSEYDAFA 359
>gi|392536777|ref|ZP_10283914.1| poly(A) polymerase [Pseudoalteromonas marina mano4]
Length = 475
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 180/354 (50%), Gaps = 39/354 (11%)
Query: 34 QMCREMC---SDSFNQEVDVSNWKTVDSRN-LGITRAMIPQPSWVVLKILKSQGFQAYLV 89
Q CR++ + + N VS+ V +R GI+R + VL LK GF AYLV
Sbjct: 19 QFCRQIIGPNTSAENASASVSSEPLVITRGEHGISRKQFSPNAIKVLYRLKDGGFDAYLV 78
Query: 90 GGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFET 149
GGC+RD+LL + PKDFDV+T A Q+++ F +IGRRF + + +IEV+ T
Sbjct: 79 GGCIRDILLGQQPKDFDVVTNATPDQVKKLFRNCRLIGRRFRLAHIVFGREIIEVA---T 135
Query: 150 VAKHGEGKETVLLSQIPYGCDEIDLVR-------WRNSIHRDFTINSLFFDPFLNKIYDY 202
+ H E E+ +QI E L+R ++ RDF+IN+L++ I+DY
Sbjct: 136 MRGHHEAPESK--NQISQSSTEGQLLRDNVFGSIEEDAERRDFSINALYYSINDFSIHDY 193
Query: 203 ANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIER 262
ANG++ ++ ++ + + ED R+LR +R A +L +S + + + L+S ++
Sbjct: 194 ANGLAAIKAKQIELIGDPETRYREDPVRMLRAVRFATKLDMSIAPNSEKPISELASLLDN 253
Query: 263 LDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENP----- 317
+ +R+ E+ + G AE++ +LR+Y L + L P LD KI NP
Sbjct: 254 IPPARLFEEVLKLFLNGKAEANFLMLRQYGLFRALFP----ALD----KILEANPNGLEQ 305
Query: 318 MMLMRLFFNLDKLVSCDR---PA---DYTLWVGLLSFHQALVSDPQ----DAFV 361
+ ++F N DK ++ D+ PA LW LL+ + L ++ Q DAF
Sbjct: 306 AFVQQMFQNTDKRINADKKVTPAFIFAALLWFPLLAITKKLQAEEQLSEYDAFA 359
>gi|344942132|ref|ZP_08781420.1| poly(A) polymerase [Methylobacter tundripaludum SV96]
gi|344263324|gb|EGW23595.1| poly(A) polymerase [Methylobacter tundripaludum SV96]
Length = 467
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 141/278 (50%), Gaps = 11/278 (3%)
Query: 27 FNHTLEPQMCREMCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQA 86
F ++P + R S E + K I+RA I + + VL L+ +GF A
Sbjct: 8 FKKIIKPVLSRVEASARNEAEPVDARVKIYSRAEHNISRAQISEHALKVLYRLQKEGFDA 67
Query: 87 YLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSS 146
YLVGGCVRDLLL R PKDFDV+T A+ Q+R+ F +IGRRF + VH +IEV++
Sbjct: 68 YLVGGCVRDLLLGREPKDFDVVTNADPDQVRKVFRNCRLIGRRFRLAHVHFGREIIEVAT 127
Query: 147 FETVA-----KHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYD 201
F K KE LL YG E D+ WR RDFT+N+L+++ + D
Sbjct: 128 FRGAGEEQNDKQVLNKEGRLLRDNVYGTIEEDV--WR----RDFTVNALYYNIKDFSVVD 181
Query: 202 YANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIE 261
Y G++D + L+ + + F ED R+LR +R A +LG + A+H+ +
Sbjct: 182 YVGGMADHKTGTLKLIGDPEMRFREDPVRMLRAVRFAVKLGFKLDSACEKAIHNDVQLLA 241
Query: 262 RLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ +R+ E + G A + +LR Y L ++L P
Sbjct: 242 SIPSARLYDEALKLFLSGYALQTFEMLRHYGLFQVLFP 279
>gi|397662222|ref|YP_006502922.1| poly(A) polymerase [Taylorella equigenitalis ATCC 35865]
gi|394350401|gb|AFN36315.1| poly(A) polymerase [Taylorella equigenitalis ATCC 35865]
Length = 451
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 129/239 (53%), Gaps = 6/239 (2%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V ++L+ G+Q+++VGG VRDL+L + PKDFDV T A +I+ F
Sbjct: 28 GIEHRLVSRNAIKVCEVLRDHGYQSFIVGGAVRDLMLGKAPKDFDVATNATPLEIKPLFR 87
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
R+ IIGRRF + V +IE S+F T E + +L YG E D+ R
Sbjct: 88 RALIIGRRFKLVHVVFGPEIIETSTFRTSGSQPEDNDGRILFDNNYGTIETDVDR----- 142
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFTIN+L++DP +YD+ NGI D++ L++R + + ED R+LR +R A +L
Sbjct: 143 -RDFTINALYYDPISETVYDFHNGIKDIKNLQIRMIGDPEKRYREDPVRMLRAIRFAGKL 201
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
G F + LS I + SRI E +L+ G + I LR+ L K LP
Sbjct: 202 GAKFAPSTYEPIKRLSHLISNVPDSRIFDETYKLLTCGDSIYCIQQLRQLQLDKGTLPL 260
>gi|192359588|ref|YP_001980912.1| polynucleotide adenylyltransferase [Cellvibrio japonicus Ueda107]
gi|190685753|gb|ACE83431.1| polynucleotide adenylyltransferase [Cellvibrio japonicus Ueda107]
Length = 457
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 134/242 (55%), Gaps = 10/242 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
G++R I Q + ++K L GF+AYLVGG VRDLLL PKDFDV T A +++RR F
Sbjct: 38 GVSRKNISQAALKIIKQLHEAGFEAYLVGGGVRDLLLGGHPKDFDVATNAKPEEVRRLFR 97
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHGEGKETVLLSQIPYGCDEIDLVRW 177
+ I+GRRF I V I +IEV++F + H ++ +LL YG E D +R
Sbjct: 98 GARIVGRRFQIVHVRIGREMIEVTTFRGHHDEDLNHTRNEDGMLLRDNVYGTLETDAMR- 156
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDF++N+L++D I DY G+ DL+ LR + + ED RILR LR
Sbjct: 157 -----RDFSVNALYYDLKTFSIIDYCGGMEDLKKRTLRIIGEPVTRYKEDPVRILRALRF 211
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
AA+LG + + L + + + ++R+ E+ + G+A ++ L+R Y+LL+ L
Sbjct: 212 AAKLGFALEPSTAKPIRPLGNLLLNVSEARLFEEVLKLFLNGSATATFNLMREYDLLQQL 271
Query: 298 LP 299
P
Sbjct: 272 FP 273
>gi|333899156|ref|YP_004473029.1| poly(A) polymerase [Pseudomonas fulva 12-X]
gi|333114421|gb|AEF20935.1| poly(A) polymerase [Pseudomonas fulva 12-X]
Length = 465
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/257 (36%), Positives = 135/257 (52%), Gaps = 20/257 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I R I + + V++ L++ G++AYLVGGCVRDLLL PKDFDV T+A +Q+R +F
Sbjct: 33 IQRGQISRHAISVVERLQNAGYEAYLVGGCVRDLLLGIEPKDFDVATSATPEQVRAEFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET------------VLLSQIPYGCD 170
+ +IGRRF + VH +IE ++F A H EG E +L YG
Sbjct: 93 ARVIGRRFKLVHVHFGREIIETATFR--ANHPEGDEQENSNQSSRNESGRILRDNVYGTL 150
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTIN+L++DP +I DYANG+ D+R +R + + ED R
Sbjct: 151 EDDAQR------RDFTINALYYDPVSERILDYANGMHDIRNNLVRLIGNPTQRYQEDPVR 204
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L K +H L+ + + +R+ E+ + G A + LL
Sbjct: 205 MLRAVRFAAKLDFDIEKHSADPIHDLAQLLAGIPAARLFDEVLKLFLSGYAIYTYDLLVD 264
Query: 291 YNLLKILLPFHAAYLDQ 307
Y L L P AA L Q
Sbjct: 265 YGLFGQLFPASAAALRQ 281
>gi|393759753|ref|ZP_10348565.1| poly(A) polymerase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393161565|gb|EJC61627.1| poly(A) polymerase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 459
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 133/243 (54%), Gaps = 13/243 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R ++ + + V ++L +G+QAY+VGG VRDLL+ PKDFDV T A +QIR F
Sbjct: 34 GIDRRLVSRHAIKVCEVLNHEGYQAYVVGGAVRDLLVGLEPKDFDVATNATPEQIRPLFR 93
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----VLLSQIPYGCDEIDLVRW 177
R+ IIGRRF + V VIE S+F GK+T +L YG E D R
Sbjct: 94 RARIIGRRFRLVHVVFGQEVIETSTFRA---DDSGKQTDEHGRILRDNEYGTIEDDAAR- 149
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFT+N+L++DP + DY NG++DL+ ++R + A + ED R+LR +R
Sbjct: 150 -----RDFTLNALYYDPLTETVIDYHNGVADLKNRQVRIIGDAQTRYREDPVRMLRAVRF 204
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A++L + D + SLS IE + +SR+ E +L+ G A I L+ L L
Sbjct: 205 ASKLDATIEPATDAPIRSLSRLIENVPESRLADETLKLLNCGHAMDCIQRLQALGLHSKL 264
Query: 298 LPF 300
LP
Sbjct: 265 LPM 267
>gi|416069817|ref|ZP_11583413.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|347999570|gb|EGY40391.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
Length = 432
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 153/285 (53%), Gaps = 21/285 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GIT MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F
Sbjct: 3 GITPRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAIFQ 62
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDE 171
R ++GRRF + V +IEV++F E +AK E E +LL YG E
Sbjct: 63 RQCRLVGRRFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSE--EGMLLRDNVYGTLE 120
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF++N+L+++P N + DY NGI DL+ KLR + + ED R+
Sbjct: 121 QDAER------RDFSVNALYYNPQDNTLKDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRM 174
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + + LS ++ + +R+ E +L G+ + LLR+Y
Sbjct: 175 LRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPSARLFEESLKLLQGGSGVKTYRLLRQY 234
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L + L P Y ++ + + M++R + D+ V+ P
Sbjct: 235 GLFEQLFPLLQNYFTEREDSMAEK---MILRALTSTDERVADKLP 276
>gi|415768871|ref|ZP_11484025.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D17P-2]
gi|348657717|gb|EGY75303.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D17P-2]
Length = 648
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 152/285 (53%), Gaps = 21/285 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F
Sbjct: 59 GIAPRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQ 118
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDE 171
R ++GRRF + V +IEV++F E +AK E E +LL YG E
Sbjct: 119 RQCRLVGRRFRLAHVMFGREIIEVATFRAGHMEHHNEKLAKQSE--EGMLLRDNVYGTLE 176
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF++N+L+++P N + DY NGI DL+ KLR + + ED R+
Sbjct: 177 QDAER------RDFSVNALYYNPQDNTLKDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRM 230
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + + LS ++ + +R+ E +L G+ + LLR+Y
Sbjct: 231 LRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQY 290
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L + L P Y ++ + + M++R + D+ V+ P
Sbjct: 291 GLFEQLFPLLQNYFTEREDSMAEK---MILRALTSTDERVADKLP 332
>gi|387770794|ref|ZP_10126969.1| polynucleotide adenylyltransferase [Pasteurella bettyae CCUG 2042]
gi|386903544|gb|EIJ68354.1| polynucleotide adenylyltransferase [Pasteurella bettyae CCUG 2042]
Length = 450
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 141/267 (52%), Gaps = 14/267 (5%)
Query: 50 VSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVIT 109
+ N + + LGI MI + + V++ L G++AY+VGGC+RDLLL + PKDFDV T
Sbjct: 7 LQNKHAIKATQLGINPRMISKNALAVVEKLNRNGYEAYIVGGCLRDLLLNKNPKDFDVAT 66
Query: 110 TANLKQIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFET----VAKHGEGK---ETVL 161
A +QI+ F R ++GRRF + + +IEV++F +A K E +L
Sbjct: 67 NARPEQIQAIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHTNIANENASKQSDEGML 126
Query: 162 LSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
L YG E D R RDFT+N+L++ P N I+DY NGI DL+ KLR +
Sbjct: 127 LRDNVYGTLEQDAER------RDFTVNALYYSPKDNLIFDYFNGIEDLKSGKLRLIGDPV 180
Query: 222 LSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAA 281
+ ED R+LR +R A+L + K + +H L+ ++ + +R+ E +L G
Sbjct: 181 TRYQEDPVRMLRAIRFMAKLDMFLDKPSEKPIHELAYLLKNIPPARLFDESLKLLQCGFG 240
Query: 282 ESSICLLRRYNLLKILLPFHAAYLDQQ 308
+ LLR Y+L + L P Y ++
Sbjct: 241 VKTYKLLREYHLFEQLFPALMPYFTER 267
>gi|415763864|ref|ZP_11482201.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D17P-3]
gi|348654445|gb|EGY70068.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D17P-3]
Length = 432
Score = 152 bits (384), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 153/285 (53%), Gaps = 21/285 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GIT MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F
Sbjct: 3 GITPRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAIFQ 62
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDE 171
R ++GRRF + V +IEV++F E +AK E E +LL YG E
Sbjct: 63 RQCRLVGRRFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSE--EGMLLRDNVYGTLE 120
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF++N+L+++P N + DY NGI DL+ KLR + + ED R+
Sbjct: 121 QDAER------RDFSVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRM 174
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + + LS ++ + +R+ E +L G+ + LLR+Y
Sbjct: 175 LRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQY 234
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L + L P Y ++ + + M++R + D+ V+ P
Sbjct: 235 GLFEQLFPLLQNYFTEREDSMAEK---MILRALTSTDERVADKLP 276
>gi|322515233|ref|ZP_08068231.1| polyA polymerase family protein [Actinobacillus ureae ATCC 25976]
gi|322118738|gb|EFX90944.1| polyA polymerase family protein [Actinobacillus ureae ATCC 25976]
Length = 510
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 150/273 (54%), Gaps = 18/273 (6%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
TV++ + IT P+ + V+++ L+ GF+AY+VGGC+RDLLL PKDFDV T A +
Sbjct: 70 TVNAGHYDITPKDFPKNALVIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPE 129
Query: 115 QIRRQF-HRSEIIGRRFPICRVHIKGSVIEVSSFET-VAKHGEGK------ETVLLSQIP 166
+I++ F H+ +IGRRF + + + EV++F + H K E +LL
Sbjct: 130 EIQKIFGHQCRLIGRRFRLAHIVFGRDIYEVATFRADHSNHSSDKISKVSEEGMLLRDNV 189
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG D R RDFT+NSL++DP N I+D+ +GI+DL+ KLR + + + E
Sbjct: 190 YGTLREDAQR------RDFTVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVIRYQE 243
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K D + L+ ++ + +R+ E +L G +
Sbjct: 244 DPVRMLRAVRFMAKLDMFLDKPSDAPIRELAHLLKNIPAARLFDESLKLLQSGQGFKTYQ 303
Query: 287 LLRRYNLLK----ILLPFHAAYLDQQAGKITAE 315
L+R+Y L + +L+PF + D A ++ ++
Sbjct: 304 LMRQYGLFEQLFPVLVPFFTEHNDSNAERMLSK 336
>gi|77164400|ref|YP_342925.1| Poly(A) polymerase, PcnB [Nitrosococcus oceani ATCC 19707]
gi|254434825|ref|ZP_05048333.1| poly(A) polymerase subfamily [Nitrosococcus oceani AFC27]
gi|76882714|gb|ABA57395.1| Poly(A) polymerase, PcnB [Nitrosococcus oceani ATCC 19707]
gi|207091158|gb|EDZ68429.1| poly(A) polymerase subfamily [Nitrosococcus oceani AFC27]
Length = 401
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 137/269 (50%), Gaps = 22/269 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+L LK GF AYLVGGCVRDLLL R PKDFDV T A +QIR F ++GRRF +
Sbjct: 1 MLYRLKKAGFSAYLVGGCVRDLLLGREPKDFDVTTDARPEQIRDLFRSCRLVGRRFRLAH 60
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
+ +IE ++F + G + ++S YG E D WR RDF++N+L+++
Sbjct: 61 LRFGREIIETATFRGPPEEGLSENGRIVSDNVYGTLEQDA--WR----RDFSVNALYYNI 114
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+ DY G+ DL +LR + + ED R+LR +R AA+LG + D +T +
Sbjct: 115 RDFSVVDYTRGMEDLEAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLGFTLHPDSETPIW 174
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP--------------- 299
L+ S++ + +R+ E+ + G A + LLRR+NL + L P
Sbjct: 175 ELAPSLQEIPSARLFEEILKLFLGGCAVQTFELLRRFNLFRWLFPQTEACLGEEEQGFPR 234
Query: 300 -FHAAYLDQQAGKITAENPMMLMRLFFNL 327
F A L+ +I A P+ LF L
Sbjct: 235 IFLAQALNNTDARIAAGKPVTPAFLFAAL 263
>gi|416033893|ref|ZP_11573173.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|347998763|gb|EGY39672.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
Length = 417
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 153/285 (53%), Gaps = 21/285 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GIT MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F
Sbjct: 3 GITPRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAIFQ 62
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDE 171
R ++GRRF + V +IEV++F E +AK E E +LL YG E
Sbjct: 63 RQCRLVGRRFRLAHVMFGREIIEVATFRAGHAEHHNEKLAKQSE--EGMLLRDNVYGTLE 120
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF++N+L+++P N + DY NGI DL+ KLR + + ED R+
Sbjct: 121 QDAER------RDFSVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRM 174
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + + LS ++ + +R+ E +L G+ + LLR+Y
Sbjct: 175 LRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQY 234
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L + L P Y ++ + + M++R + D+ V+ P
Sbjct: 235 GLFEQLFPLLQNYFTEREDSMAEK---MILRALTSTDERVADKLP 276
>gi|260914325|ref|ZP_05920794.1| polyA polymerase [Pasteurella dagmatis ATCC 43325]
gi|260631426|gb|EEX49608.1| polyA polymerase [Pasteurella dagmatis ATCC 43325]
Length = 499
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 138/258 (53%), Gaps = 18/258 (6%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GIT MI + + V++ L QGF+AY+VGGC+RDLLL + PKDFDV+T+A +QI+ F
Sbjct: 73 GITPRMINRNAIAVIEKLHRQGFEAYIVGGCLRDLLLGKHPKDFDVVTSARPEQIQNIFQ 132
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDE 171
R ++GRRF + + +IEV++F A H E + E +LL YG E
Sbjct: 133 RQCRLVGRRFRLAHIMFGRDIIEVATFR--ANHTESRNENHAKRSEEGMLLRDNVYGTIE 190
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFT+N+L+++P N + DY NGI DL+ KLR + + ED R+
Sbjct: 191 QDAER------RDFTVNALYYNPQDNTLRDYFNGIEDLKAGKLRLIGDPATRYQEDPVRM 244
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + + L+ ++ + +R+ E +L G + LLR Y
Sbjct: 245 LRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGYGVKTYKLLREY 304
Query: 292 NLLKILLPFHAAYLDQQA 309
L L P Y ++
Sbjct: 305 GLFDQLFPSLIPYFTEKG 322
>gi|365967695|ref|YP_004949257.1| polyA polymerase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|416074936|ref|ZP_11584784.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|444344104|ref|ZP_21152419.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|444348165|ref|ZP_21155890.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
gi|348006551|gb|EGY46960.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|365746608|gb|AEW77513.1| polyA polymerase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|443544742|gb|ELT54675.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|443547631|gb|ELT57092.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
Length = 432
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 152/285 (53%), Gaps = 21/285 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GIT MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F
Sbjct: 3 GITPRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQ 62
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDE 171
R ++GRRF + V +IEV++F E +AK E E +LL YG E
Sbjct: 63 RQCRLVGRRFRLAHVMFGREIIEVATFRAGHMEHHNEKLAKQSE--EGMLLRDNVYGTLE 120
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF++N+L+++P N + DY NGI DL+ KLR + + ED R+
Sbjct: 121 QDAER------RDFSVNALYYNPQDNTLKDYFNGIEDLKNGKLRLIGDPVTRYQEDPVRM 174
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + + LS ++ + +R+ E +L G + LLR+Y
Sbjct: 175 LRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPSARLFEESLKLLQGGNGVKTYRLLRQY 234
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L + L P Y ++ + + M++R + D+ V+ P
Sbjct: 235 GLFEQLFPLLQNYFTEREDSMAEK---MILRALTSTDERVADKLP 276
>gi|357404037|ref|YP_004915961.1| poly(A) polymerase [Methylomicrobium alcaliphilum 20Z]
gi|351716702|emb|CCE22364.1| Poly(A) polymerase [Methylomicrobium alcaliphilum 20Z]
Length = 498
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 132/245 (53%), Gaps = 16/245 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+ I + + VL LK GF+AYLVGGCVRDLLL R PKDFDV+T A+ Q+R+ F
Sbjct: 75 ISRSQISENALKVLYRLKKSGFEAYLVGGCVRDLLLGREPKDFDVVTDAHPDQVRKIFRN 134
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEIDL 174
++GRRF + VH +IEV++F A GE E L+ YG E D+
Sbjct: 135 CRLVGRRFRLAHVHFGREIIEVATFRGNA--GEVPDDDLLLNDEGRLVRDNIYGTIEEDV 192
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
WR RDFT+NSL+++ + DY G++D + LR + + ED R+LR
Sbjct: 193 --WR----RDFTVNSLYYNIRDFSVTDYVGGMADHKTGTLRLIGDPETRYREDPVRMLRA 246
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +LG + D + + L+ + + +R+ E + G A + +LR Y L
Sbjct: 247 IRFAVKLGFTLHPDCEKPITDLAELLHHIPPARLFDEAIKLFLSGHALQTFEMLRHYGLF 306
Query: 295 KILLP 299
+IL P
Sbjct: 307 QILFP 311
>gi|424778634|ref|ZP_18205579.1| poly(A) polymerase [Alcaligenes sp. HPC1271]
gi|422886535|gb|EKU28952.1| poly(A) polymerase [Alcaligenes sp. HPC1271]
Length = 459
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 133/243 (54%), Gaps = 13/243 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R ++ + + V ++L +G+QAY+VGG VRDLL+ PKDFDV T A +QIR F
Sbjct: 34 GIDRRLVSRHAIKVCEVLNHEGYQAYVVGGAVRDLLVGLEPKDFDVATNATPEQIRPLFR 93
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----VLLSQIPYGCDEIDLVRW 177
R+ IIGRRF + V +IE S+F GK+T +L YG E D R
Sbjct: 94 RARIIGRRFRLVHVVFGQEIIETSTFRA---DDSGKQTDEHGRILRDNEYGTIEDDAAR- 149
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFT+N+L++DP + DY NG++DL+ ++R + A + ED R+LR +R
Sbjct: 150 -----RDFTLNALYYDPLTETVIDYHNGVADLKDRQVRIIGDAETRYREDPVRMLRAVRF 204
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A++L + D + SLS IE + +SR+ E +L+ G A I L+ L L
Sbjct: 205 ASKLDATIEPATDAPIRSLSRLIENVPESRLADETLKLLNCGHAMDCIQRLQALGLHSKL 264
Query: 298 LPF 300
LP
Sbjct: 265 LPM 267
>gi|404498031|ref|YP_006722137.1| nucleic acid-independent polyadenylating polymerase [Geobacter
metallireducens GS-15]
gi|418067274|ref|ZP_12704622.1| poly(A) polymerase [Geobacter metallireducens RCH3]
gi|78195628|gb|ABB33395.1| nucleic acid-independent polyadenylating polymerase [Geobacter
metallireducens GS-15]
gi|373559152|gb|EHP85461.1| poly(A) polymerase [Geobacter metallireducens RCH3]
Length = 457
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/273 (35%), Positives = 139/273 (50%), Gaps = 33/273 (12%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+ + + VL LK G AYLVGGCVRDLLL R PKDFDV T A Q++R F
Sbjct: 19 ISRSQVSPNALRVLYRLKDNGCIAYLVGGCVRDLLLGREPKDFDVATNATPNQVKRLFRN 78
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKH----------------GEGK--------- 157
++GRRF + +H + +IEV++F +A GEG+
Sbjct: 79 CRLVGRRFRLAHIHYQDEIIEVATFRALAPEEPEDTAPAPVSPENVPGEGERPRLPRHVV 138
Query: 158 --ETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLR 215
E ++L +G E D VR RDFT+N+L ++ I DYANG+ DLR +R
Sbjct: 139 SDEGMVLRDNVFGTPEEDAVR------RDFTVNALAYNIADFSIIDYANGMEDLRRGVIR 192
Query: 216 TLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYM 275
T+ + FTED R+LR +R AA LG + A+ L+ +I R R+ E+ +
Sbjct: 193 TIGDPLVRFTEDPVRMLRAVRFAATLGFTVEDATWQAIRELAPAITRATAPRLYEEVLKL 252
Query: 276 LSYGAAESSICLLRRYNLLKILLPFHAAYLDQQ 308
G E LLR+ L L P +A+LD++
Sbjct: 253 FLSGEGERVYQLLRQAGLFSHLFPRFSAWLDRE 285
>gi|386818085|ref|ZP_10105303.1| poly(A) polymerase [Thiothrix nivea DSM 5205]
gi|386422661|gb|EIJ36496.1| poly(A) polymerase [Thiothrix nivea DSM 5205]
Length = 459
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 133/233 (57%), Gaps = 15/233 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ L+ G++AYLVGGCVRDLLL R PKDFD+ T+A ++IR+ F+ +IGRRF +
Sbjct: 46 VVRRLQKAGYEAYLVGGCVRDLLLGRTPKDFDIATSARPEEIRKLFNSCRLIGRRFRLAH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEG-------KETVLLSQIPYGCDEIDLVRWRNSIHRDFTI 187
++ +EV++F A H EG E ++ YG E D+ WR RDFTI
Sbjct: 106 IYYGRDYLEVATFR--APHDEGDDGGKVNDEGRIIHDNVYGTLEEDV--WR----RDFTI 157
Query: 188 NSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCK 247
N+LF++P ++ D+ G+ DL K+R + F ED R+LR +R AA+LG +
Sbjct: 158 NALFYNPSNGELLDFVGGLDDLHHRKIRLIGDPEKRFREDPVRLLRAIRFAAKLGFDIEE 217
Query: 248 DIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
T + SL+ +E + +R+ E+ +L G + LLR Y +L+ LLP
Sbjct: 218 RTRTPIASLAILLEAVSSARLFDEIIKLLHSGDGLPTYRLLREYGVLQHLLPL 270
>gi|359455308|ref|ZP_09244543.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20495]
gi|414071257|ref|ZP_11407229.1| poly(A) polymerase [Pseudoalteromonas sp. Bsw20308]
gi|358047651|dbj|GAA80792.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20495]
gi|410806331|gb|EKS12325.1| poly(A) polymerase [Pseudoalteromonas sp. Bsw20308]
Length = 473
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 173/329 (52%), Gaps = 23/329 (6%)
Query: 34 QMCREMCS-DSFNQEVDVSNWKTVDSRN-LGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
Q CR++ ++ + VS+ V +R GI+R + VL LK G+ AYLVGG
Sbjct: 19 QFCRQIIGPNTSAKSASVSSEPIVVTRGEHGISRKQFSPNAIKVLYRLKDGGYDAYLVGG 78
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
C+RD+LL + PKDFDV+T A Q+++ F +IGRRF + + +IEV+ T+
Sbjct: 79 CIRDILLGQQPKDFDVVTNATPDQVKKLFRNCRLIGRRFRLAHIVFGREIIEVA---TMR 135
Query: 152 KHGEGKETVLLSQIPYGCDEIDLVR-------WRNSIHRDFTINSLFFDPFLNKIYDYAN 204
H E E +QI D+ L+R ++ RDF+IN+L++ I+DYAN
Sbjct: 136 GHHEAPEDK--NQISQSSDQGQLLRDNVFGSIEEDAERRDFSINALYYSINDFSIHDYAN 193
Query: 205 GISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLD 264
G++ ++ ++ + + ED R+LR +R A +L +S + + L+S ++ +
Sbjct: 194 GLAAIKAKQIELIGDPETRYREDPVRMLRAVRFATKLDMSIAPKSEKPITELASLLDNIP 253
Query: 265 KSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLF 324
+R+ E+ + G AE++ +LR+Y L K L P + L+++ G + ++ ++F
Sbjct: 254 PARLFEEVLKLFLNGKAEANFLMLRKYGLFKSLFPDLDSILNKKPGGLEH---TLVQQMF 310
Query: 325 FNLDKLVSCDR---PA---DYTLWVGLLS 347
N D+ ++ D+ PA LW LL+
Sbjct: 311 QNTDERINADKKVTPAFIFAALLWFPLLA 339
>gi|374704276|ref|ZP_09711146.1| poly(A) polymerase [Pseudomonas sp. S9]
Length = 468
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 137/263 (52%), Gaps = 16/263 (6%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
++S I R I + + V++ L++ G+QA+LVGGCVRDLLL PKDFDV T+A +
Sbjct: 25 VLNSNQHPIQRGQISRYAISVVERLQNAGYQAFLVGGCVRDLLLDVEPKDFDVSTSATPE 84
Query: 115 QIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-------- 166
Q+R +F + +IGRRF + VH +IEV++F G+ +E LS
Sbjct: 85 QVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPQGDEEENSNLSSRNENGRILRD 144
Query: 167 --YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
YG E D R RDFTIN+L++DP +I DYANG D+R +R + +
Sbjct: 145 NVYGNLEDDAQR------RDFTINALYYDPSNERILDYANGAHDIRNNLVRLIGDPTQRY 198
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R AA+L K ++ L+ + + +R+ E+ + G A +
Sbjct: 199 QEDPVRMLRAIRFAAKLDFDIEKHSAAPIYKLAPLLNEIPSARLFDEVLKLFLAGYAVYT 258
Query: 285 ICLLRRYNLLKILLPFHAAYLDQ 307
LL Y L L P AA L Q
Sbjct: 259 YELLVDYGLFGQLFPASAAALKQ 281
>gi|297620654|ref|YP_003708791.1| poly(A) polymerase [Waddlia chondrophila WSU 86-1044]
gi|297375955|gb|ADI37785.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044]
gi|337293849|emb|CCB91836.1| poly(A) polymerase [Waddlia chondrophila 2032/99]
Length = 413
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 139/250 (55%), Gaps = 11/250 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I A + + V++ L G+ AYLVGG VRDLL++R PKDFD+ T+A+ ++I++ F R
Sbjct: 13 IDPAHVDSDALYVIRKLNEAGYTAYLVGGSVRDLLVKREPKDFDISTSAHPQEIKKIFRR 72
Query: 123 S-EIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
+ +IG+RF + + +IEVS+F + GE +++ +G +E D++R
Sbjct: 73 NCFLIGKRFRLAHIKFGKKIIEVSTFRS----GENASDLIVRDNTWGTEEEDVIR----- 123
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFTIN LF+DPF +K+ DY G D+ LR++ + F +D R+LR ++ AR
Sbjct: 124 -RDFTINGLFYDPFEHKVIDYVGGWEDIHQKVLRSIGDPIIRFKQDPVRMLRLIKFRARF 182
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
G + + A+ + I + +RI+ E+ ML GAA L+ + +L +L P
Sbjct: 183 GFNIDEQTKQALIATRKEITKSSPARILEEMLRMLESGAAAQFFHLMTQAKMLHLLFPML 242
Query: 302 AAYLDQQAGK 311
L+ + GK
Sbjct: 243 TTILETEKGK 252
>gi|422349952|ref|ZP_16430840.1| poly(A) polymerase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404657801|gb|EKB30683.1| poly(A) polymerase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 479
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 143/257 (55%), Gaps = 8/257 (3%)
Query: 46 QEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDF 105
+ V V N + + + I A++ + + LK +GFQAY+VGG VRDL+L PKDF
Sbjct: 16 RSVVVKNPRVISADEHRIDPALVSAEARATCEALKRRGFQAYIVGGAVRDLMLGVTPKDF 75
Query: 106 DVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--LLS 163
DV T A +Q++R R+ IIGRRF + V VIE S+F + G+ K+ ++S
Sbjct: 76 DVATDATPEQVKRCQRRAVIIGRRFKLVHVIFGREVIECSTFRALEGAGQRKDATGRVVS 135
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
+G E+ W ++ RDFTIN+L++DP +++DY G DL +LR +
Sbjct: 136 DNVFG--EM----WEDAARRDFTINALYYDPQTQELFDYHRGFEDLAAKRLRMIGDPAER 189
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R++R +RIAA+LG + + + ++ +E + +R++ E+ +L+ G A +
Sbjct: 190 YREDPVRMMRAVRIAAKLGFTIEPATEAPIPKMAKLLENVPSARLVDEVLKLLTSGHAVA 249
Query: 284 SICLLRRYNLLKILLPF 300
+ LR+ L K LLP
Sbjct: 250 CLSKLRQEGLHKALLPL 266
>gi|388467827|ref|ZP_10142037.1| poly(A) polymerase [Pseudomonas synxantha BG33R]
gi|388011407|gb|EIK72594.1| poly(A) polymerase [Pseudomonas synxantha BG33R]
Length = 467
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 137/266 (51%), Gaps = 16/266 (6%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + IIGRRF + +H +IEV++F + +E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDDEEDTNQSSRNESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R +R +
Sbjct: 141 ILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNNLIRLIGDP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L K T + L+ + + +R+ E+ + G
Sbjct: 195 TQRYQEDPVRMLRAVRFAAKLNFGIEKHTATPIRDLAPMLREIPSARLFEEVLKLFLSGY 254
Query: 281 AESSICLLRRYNLLKILLPFHAAYLD 306
A + +L L L P A L+
Sbjct: 255 AADTFEMLVDLQLFDPLFPASAEALE 280
>gi|444346612|ref|ZP_21154576.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|443541430|gb|ELT51857.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
Length = 432
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 152/285 (53%), Gaps = 21/285 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F
Sbjct: 3 GIAPRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQ 62
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDE 171
R ++GRRF + V +IEV++F E +AK E E +LL YG E
Sbjct: 63 RQCRLVGRRFRLAHVMFGREIIEVATFRAGHMEHHNEKLAKQSE--EGMLLRDNVYGTLE 120
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF++N+L+++P N + DY NGI DL+ KLR + + ED R+
Sbjct: 121 QDAER------RDFSVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRM 174
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + + LS ++ + +R+ E +L G+ + LLR+Y
Sbjct: 175 LRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQY 234
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L + L P Y ++ + + M++R + D+ V+ P
Sbjct: 235 GLFEQLFPLLQNYFTEREDSMAEK---MILRALTSTDERVADKLP 276
>gi|359435327|ref|ZP_09225542.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20652]
gi|357918042|dbj|GAA61791.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20652]
Length = 430
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 163/317 (51%), Gaps = 25/317 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R + +L LK G+ AYLVGGC+RD+LL + PKDFDV+T A Q+++ F
Sbjct: 8 GISRKQFSPNAIKILYRLKDGGYDAYLVGGCIRDILLGQQPKDFDVVTNATPDQVKKLFR 67
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVR----- 176
+IGRRF + + +IEV+ T+ H E +E +QI DE L+R
Sbjct: 68 NCRLIGRRFRLAHIVFGREIIEVA---TMRGHHEAQEDK--NQISQSSDEGQLLRDNVFG 122
Query: 177 --WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDF+IN+L++ I+DYANG++ ++ ++ + + ED R+LR
Sbjct: 123 SIEEDAERRDFSINALYYSINDFSIHDYANGLAAIKAKQIELIGDPETRYREDPVRMLRA 182
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L +S + + L+S ++ + +R+ E+ + G AE++ +LR+Y L
Sbjct: 183 VRFATKLDMSIAPKSEKPITELASLLDNIPPARLFEEILKLFLNGKAEANFLMLRKYGLF 242
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR---PA---DYTLWVGLLSF 348
+ L P LD+ G + ++ ++F N DK ++ D+ PA LW LL
Sbjct: 243 RSLFPELDKILDKNPGGLEH---ALIQQMFQNTDKRINTDKKVTPAFIFAALLWFPLLEL 299
Query: 349 HQALVSDPQ----DAFV 361
+ + Q DAF
Sbjct: 300 TKKIQEQEQLIEYDAFA 316
>gi|348590549|ref|YP_004875011.1| poly(A) polymerase [Taylorella asinigenitalis MCE3]
gi|347974453|gb|AEP36988.1| Poly(A) polymerase [Taylorella asinigenitalis MCE3]
Length = 451
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 135/258 (52%), Gaps = 10/258 (3%)
Query: 43 SFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVP 102
FNQ S K V GI R ++ + + V ++L+S G A++VGG VRDL+L +VP
Sbjct: 13 GFNQ----SKLKKVPKSVHGIDRRLVSRNAIKVCEVLRSHGHTAFIVGGAVRDLMLGQVP 68
Query: 103 KDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLL 162
KDFDV T A +I+ F R+ IIG+RF + V +IE S+F + E + +L
Sbjct: 69 KDFDVTTDATPLEIKPLFRRALIIGKRFKLVHVMFGPEIIETSTFRASGELPEDSDGRIL 128
Query: 163 SQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 222
S YG E D R RDFTIN++++DP +YDY NG D++ L++R +
Sbjct: 129 SDNNYGTIETDAER------RDFTINAMYYDPIDEIVYDYHNGFRDIKNLQIRMIGEPEK 182
Query: 223 SFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAE 282
+ ED R+LR +R A +LG + + LS I + SRI E +L+ G +
Sbjct: 183 RYREDPVRMLRAIRFAGKLGANIATSTYEPISRLSHLISNVPDSRIFDETFKLLTCGDSL 242
Query: 283 SSICLLRRYNLLKILLPF 300
I LR+ L K LP
Sbjct: 243 YCIRELRKLKLDKGTLPL 260
>gi|282890004|ref|ZP_06298538.1| hypothetical protein pah_c009o016 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174403|ref|YP_004651213.1| poly(A) polymerase [Parachlamydia acanthamoebae UV-7]
gi|281500096|gb|EFB42381.1| hypothetical protein pah_c009o016 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336478761|emb|CCB85359.1| poly(A) polymerase [Parachlamydia acanthamoebae UV-7]
Length = 423
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 140/250 (56%), Gaps = 11/250 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I AMI + VL+ L+ G+ AYLVGG VRDLL+++ PKD+D+ T+A ++I++ F +
Sbjct: 13 IDHAMIDSDALYVLQRLRDAGYTAYLVGGSVRDLLIKQTPKDYDISTSAKPEEIKQLFQK 72
Query: 123 S-EIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
S +IGRRF + + K +IEVS+F + G+ + ++L +G E D++R
Sbjct: 73 SCLLIGRRFRLAHIRFKHKIIEVSTFRS----GDNEGDLILQDNQWGSPEEDVLR----- 123
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFTIN LF+DP + I D+ G D++ LRT+ + F +D R++R L+ AR
Sbjct: 124 -RDFTINGLFYDPANHSIIDFVGGWEDIKHKLLRTIGDPAIRFKQDPVRMIRLLKFRARF 182
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
G D A+ I + +R++ E+ ML G+A S L+ + +L++L P
Sbjct: 183 GFEIDADSKKALVQCRKEIMKSSPARVLEEIFRMLESGSAASFFHLMAKGGILELLFPLL 242
Query: 302 AAYLDQQAGK 311
+L AG+
Sbjct: 243 TQFLATPAGE 252
>gi|116052874|ref|YP_793191.1| poly(A) polymerase [Pseudomonas aeruginosa UCBPP-PA14]
gi|421170514|ref|ZP_15628457.1| poly(A) polymerase [Pseudomonas aeruginosa ATCC 700888]
gi|421176982|ref|ZP_15634639.1| poly(A) polymerase [Pseudomonas aeruginosa CI27]
gi|115588095|gb|ABJ14110.1| poly(A) polymerase [Pseudomonas aeruginosa UCBPP-PA14]
gi|404523027|gb|EKA33475.1| poly(A) polymerase [Pseudomonas aeruginosa ATCC 700888]
gi|404530070|gb|EKA40083.1| poly(A) polymerase [Pseudomonas aeruginosa CI27]
Length = 467
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 129/242 (53%), Gaps = 19/242 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++IL+ G+QAY+VGGCVRD +L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 VVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H EG++ +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--AHHPEGQDDGDSRASSNESGRILRDNVYGSLEDDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L+FD ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYFDVTSERLLDYANGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K T + L+ + + +R+ E+ + G AE + LL Y L L P A
Sbjct: 217 EIEKHSATPIRRLAPLLREIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFPASAK 276
Query: 304 YL 305
L
Sbjct: 277 AL 278
>gi|399116645|emb|CCG19452.1| poly(A) polymerase [Taylorella asinigenitalis 14/45]
Length = 451
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 135/258 (52%), Gaps = 10/258 (3%)
Query: 43 SFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVP 102
FNQ S K V GI R ++ + + V ++L+S G A++VGG VRDL+L +VP
Sbjct: 13 GFNQ----SKLKKVPKSVHGIDRRLVSRNAIKVCEVLRSHGHTAFIVGGAVRDLMLGQVP 68
Query: 103 KDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLL 162
KDFDV T A +I+ F R+ IIG+RF + V +IE S+F + E + +L
Sbjct: 69 KDFDVTTDATPLEIKPLFRRALIIGKRFKLVHVMFGPEIIETSTFRASGELPEDSDGRIL 128
Query: 163 SQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 222
S YG E D R RDFTIN++++DP +YDY NG D++ L++R +
Sbjct: 129 SDNNYGTIETDANR------RDFTINAMYYDPIDEIVYDYHNGFRDIKNLQIRMIGEPEK 182
Query: 223 SFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAE 282
+ ED R+LR +R A +LG + + LS I + SRI E +L+ G +
Sbjct: 183 RYREDPVRMLRAIRFAGKLGANIATSTYEPISRLSHLISNVPDSRIFDETFKLLTCGDSL 242
Query: 283 SSICLLRRYNLLKILLPF 300
I LR+ L K LP
Sbjct: 243 YCIRELRKLKLDKGTLPL 260
>gi|395797993|ref|ZP_10477280.1| poly(A) polymerase [Pseudomonas sp. Ag1]
gi|421140181|ref|ZP_15600201.1| poly(A) polymerase [Pseudomonas fluorescens BBc6R8]
gi|395337985|gb|EJF69839.1| poly(A) polymerase [Pseudomonas sp. Ag1]
gi|404508573|gb|EKA22523.1| poly(A) polymerase [Pseudomonas fluorescens BBc6R8]
Length = 468
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 136/266 (51%), Gaps = 16/266 (6%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + IIGRRF + +H +IEV++F + +E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDEEEDTNQSSRNESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R LR +
Sbjct: 141 ILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNNLLRLIGDP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L K + L+ + + +R+ E+ + G
Sbjct: 195 TQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRDLAPMLREIPSARLFEEVLKLFLSGY 254
Query: 281 AESSICLLRRYNLLKILLPFHAAYLD 306
A + +L L L P A L+
Sbjct: 255 AADTFEMLVDLQLFDPLFPASAEALE 280
>gi|115374966|ref|ZP_01462237.1| poly(A) polymerase [Stigmatella aurantiaca DW4/3-1]
gi|310820531|ref|YP_003952889.1| poly(a) polymerase [Stigmatella aurantiaca DW4/3-1]
gi|115367993|gb|EAU66957.1| poly(A) polymerase [Stigmatella aurantiaca DW4/3-1]
gi|309393603|gb|ADO71062.1| Poly(A) polymerase [Stigmatella aurantiaca DW4/3-1]
Length = 576
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 143/287 (49%), Gaps = 26/287 (9%)
Query: 74 VVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPIC 133
VVL+ L G QAYLVGGCVRDLLL R PKDFDV T+A+ ++R F +IGRRF +
Sbjct: 118 VVLR-LHQHGHQAYLVGGCVRDLLLGRRPKDFDVATSAHPGEVRATFRNCRLIGRRFRLA 176
Query: 134 RVHIKGS-VIEVSSF-----------ETVAKHGEGKETVLL--SQIPYGCDEIDLVRWRN 179
V+ KG +IEVS+F E A++G G LL +G E D R
Sbjct: 177 HVYFKGGKIIEVSTFRANPLEMEAPEEEGAENGNGNGDDLLITHDNVFGTAEQDARR--- 233
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFTIN LF+D ++ DY G DL +RT+ + ED RILR +R A+
Sbjct: 234 ---RDFTINGLFYDVTEGRVIDYVRGRRDLDERYIRTIGDPEIRMREDPVRILRAVRFAS 290
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+LGL AM + R +R++ E ++ G A S+ LL + LKILLP
Sbjct: 291 KLGLDIESRTYAAMEGAVEDLPRCAPARLLEETFRLIRGGVAAPSLKLLSALDALKILLP 350
Query: 300 FHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
AYL + + E+ LD+ V+ P D + + L
Sbjct: 351 PVDAYL-----RRSRESERTFYAFAEALDRRVATGEPLDDAILLATL 392
>gi|395498861|ref|ZP_10430440.1| poly(A) polymerase [Pseudomonas sp. PAMC 25886]
Length = 468
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 136/266 (51%), Gaps = 16/266 (6%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + IIGRRF + +H +IEV++F + +E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDEEEDTNQSSRNESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R LR +
Sbjct: 141 ILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNNLLRLIGDP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L K + L+ + + +R+ E+ + G
Sbjct: 195 TQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRDLAPMLREIPSARLFEEVLKLFLSGY 254
Query: 281 AESSICLLRRYNLLKILLPFHAAYLD 306
A + +L L L P A L+
Sbjct: 255 AADTFEMLVDLQLFDPLFPASAEALE 280
>gi|261867904|ref|YP_003255826.1| poly(A) polymerase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413236|gb|ACX82607.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Aggregatibacter actinomycetemcomitans D11S-1]
Length = 592
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 152/285 (53%), Gaps = 21/285 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F
Sbjct: 3 GIAPRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQ 62
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDE 171
R ++GRRF + V +IEV++F E +AK E E +LL YG E
Sbjct: 63 RQCRLVGRRFRLAHVMFGREIIEVATFRAGHMEHHNEKLAKQSE--EGMLLRDNVYGTLE 120
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF++N+L+++P N + DY NGI DL+ KLR + + ED R+
Sbjct: 121 QDAER------RDFSVNALYYNPQDNTLKDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRM 174
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + + LS ++ + +R+ E +L G+ + LLR+Y
Sbjct: 175 LRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQY 234
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L + L P Y ++ + + M++R + D+ V+ P
Sbjct: 235 GLFEQLFPLLQNYFTEREDSMAEK---MILRALTSTDERVADKLP 276
>gi|425065728|ref|ZP_18468848.1| Poly(A) polymerase [Pasteurella multocida subsp. gallicida P1059]
gi|404384104|gb|EJZ80549.1| Poly(A) polymerase [Pasteurella multocida subsp. gallicida P1059]
Length = 501
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 166/314 (52%), Gaps = 24/314 (7%)
Query: 32 EPQMCREMCSDSFNQEVDVS---NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYL 88
EP RE+ + S +++ +S N + GIT MI + + +++ L GF+AY+
Sbjct: 40 EPITTREIRNVSNSKQAKLSHHYNKSIFKASQYGITPRMINRNALGIVEKLHRHGFEAYI 99
Query: 89 VGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSF 147
VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF + + VIEV++F
Sbjct: 100 VGGCLRDLLLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATF 159
Query: 148 ---------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNK 198
E++AK + KE +LL YG E D R RDFT+N+L+++P N
Sbjct: 160 RASHNENNHESLAK--QSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNT 211
Query: 199 IYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSS 258
+ DY +GI DL+ KLR + + ED R+LR +R A+L + K + + L+
Sbjct: 212 LRDYFHGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAP 271
Query: 259 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPM 318
++ + +R+ E +L G + LLR+Y L + L P Y ++ G AE
Sbjct: 272 LLKNIPPARLFDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEK-GDSLAER-- 328
Query: 319 MLMRLFFNLDKLVS 332
M+++ + D+ V+
Sbjct: 329 MILKALTSTDERVA 342
>gi|425901606|ref|ZP_18878197.1| poly(A) polymerase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397884459|gb|EJL00944.1| poly(A) polymerase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 467
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 138/268 (51%), Gaps = 20/268 (7%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE------------ 158
A +Q+R +F + IIGRRF + +H +IEV++F A H + E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFR--ANHPQNDEEEDSNQSSRNES 138
Query: 159 TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLI 218
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R +R +
Sbjct: 139 GRILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNHLVRLIG 192
Query: 219 PAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSY 278
+ ED R+LR +R AA+L K T + L+ + + +R+ E+ +
Sbjct: 193 DPRQRYQEDPVRMLRAVRFAAKLDFGIEKHTATPIRDLAPMLREIPSARLFEEVLKLFLS 252
Query: 279 GAAESSICLLRRYNLLKILLPFHAAYLD 306
G A + +L L L P A L+
Sbjct: 253 GHAADTFEMLVDLQLFDPLFPASAEALE 280
>gi|399006578|ref|ZP_10709101.1| poly(A) polymerase [Pseudomonas sp. GM17]
gi|398121894|gb|EJM11505.1| poly(A) polymerase [Pseudomonas sp. GM17]
Length = 467
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 138/268 (51%), Gaps = 20/268 (7%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE------------ 158
A +Q+R +F + IIGRRF + +H +IEV++F A H + E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFR--ANHPQNDEEEDSNQSARNES 138
Query: 159 TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLI 218
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R +R +
Sbjct: 139 GRILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNHLVRLIG 192
Query: 219 PAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSY 278
+ ED R+LR +R AA+L K T + L+ + + +R+ E+ +
Sbjct: 193 DPRQRYQEDPVRMLRAVRFAAKLDFGIEKHTATPIRDLAPMLREIPSARLFEEVLKLFLS 252
Query: 279 GAAESSICLLRRYNLLKILLPFHAAYLD 306
G A + +L L L P A L+
Sbjct: 253 GHAADTFEMLVDLQLFDPLFPASAEALE 280
>gi|416107619|ref|ZP_11590586.1| LOW QUALITY PROTEIN: polyA polymerase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348005168|gb|EGY45657.1| LOW QUALITY PROTEIN: polyA polymerase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 297
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 161/324 (49%), Gaps = 40/324 (12%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F
Sbjct: 3 GIAPRMINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQ 62
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDE 171
R ++GRRF + V +IEV++F E +AK E E +LL YG E
Sbjct: 63 RQCRLVGRRFRLAHVMFGREIIEVATFRAGHMEHHNEKLAKQSE--EGMLLRDNVYGTLE 120
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF++N+L+++P N + DY NGI DL+ KLR + + ED R+
Sbjct: 121 QDAER------RDFSVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRM 174
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + + LS ++ + +R+ E +L G+ + LLR+Y
Sbjct: 175 LRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESLKLLQGGSGVKTYRLLRQY 234
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQA 351
L + L P Y ++ + + M++R + D+ V+ P +
Sbjct: 235 GLFEQLFPLLQNYFTEREDSMAEK---MILRALTSTDERVADKLPIN------------- 278
Query: 352 LVSDPQDAFVVWVFASVLYHGKWK 375
AF+ F + Y WK
Sbjct: 279 ------PAFLFAAFFGIRYVNGWK 296
>gi|425063553|ref|ZP_18466678.1| Poly(A) polymerase [Pasteurella multocida subsp. gallicida X73]
gi|404382668|gb|EJZ79126.1| Poly(A) polymerase [Pasteurella multocida subsp. gallicida X73]
Length = 501
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 166/314 (52%), Gaps = 24/314 (7%)
Query: 32 EPQMCREMCSDSFNQEVDVS---NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYL 88
EP RE+ + S +++ +S N + GIT MI + + +++ L GF+AY+
Sbjct: 40 EPITTREIRNVSNSKQAKLSHHYNKSIFKASQYGITPRMINRNALGIVEKLHRHGFEAYI 99
Query: 89 VGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSF 147
VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF + + VIEV++F
Sbjct: 100 VGGCLRDLLLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATF 159
Query: 148 ---------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNK 198
E++AK + KE +LL YG E D R RDFT+N+L+++P N
Sbjct: 160 RASHNENNHESLAK--QSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNT 211
Query: 199 IYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSS 258
+ DY +GI DL+ KLR + + ED R+LR +R A+L + K + + L+
Sbjct: 212 LRDYFHGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAP 271
Query: 259 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPM 318
++ + +R+ E +L G + LLR+Y L + L P Y ++ G AE
Sbjct: 272 LLKNIPPARLFDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEK-GDSLAER-- 328
Query: 319 MLMRLFFNLDKLVS 332
M+++ + D+ V+
Sbjct: 329 MILKALTSTDERVA 342
>gi|421263601|ref|ZP_15714632.1| poly(A) polymerase [Pasteurella multocida subsp. multocida str.
P52VAC]
gi|401689287|gb|EJS84750.1| poly(A) polymerase [Pasteurella multocida subsp. multocida str.
P52VAC]
Length = 501
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 166/314 (52%), Gaps = 24/314 (7%)
Query: 32 EPQMCREMCSDSFNQEVDVS---NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYL 88
EP RE+ + S +++ +S N + GIT MI + + +++ L GF+AY+
Sbjct: 40 EPITTREIRNVSNSKQAKLSHHYNKSIFKASQYGITPRMINRNALGIVEKLHRHGFEAYI 99
Query: 89 VGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSF 147
VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF + + VIEV++F
Sbjct: 100 VGGCLRDLLLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATF 159
Query: 148 ---------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNK 198
E++AK + KE +LL YG E D R RDFT+N+L+++P N
Sbjct: 160 RASHNENNHESLAK--QSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNT 211
Query: 199 IYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSS 258
+ DY +GI DL+ KLR + + ED R+LR +R A+L + K + + L+
Sbjct: 212 LRDYFHGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAP 271
Query: 259 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPM 318
++ + +R+ E +L G + LLR+Y L + L P Y ++ G AE
Sbjct: 272 LLKNIPPARLFDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEK-GDSLAER-- 328
Query: 319 MLMRLFFNLDKLVS 332
M+++ + D+ V+
Sbjct: 329 MILKALTSTDERVA 342
>gi|374314910|ref|YP_005061338.1| tRNA nucleotidyltransferase/poly(A) polymerase [Sphaerochaeta
pleomorpha str. Grapes]
gi|359350554|gb|AEV28328.1| tRNA nucleotidyltransferase/poly(A) polymerase [Sphaerochaeta
pleomorpha str. Grapes]
Length = 418
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 141/259 (54%), Gaps = 18/259 (6%)
Query: 52 NWKTVDSRNL------GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDF 105
N KTV N+ I AM+ + + ++ L+ G +AY+VGG VRDL+L VPKDF
Sbjct: 10 NGKTVPVANIYTQNEHRINPAMLDRDAVWAIRKLQQSGAEAYIVGGAVRDLMLGNVPKDF 69
Query: 106 DVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQI 165
D+ T+A+ +QI+R F + IIG+RF + + K ++EVS+F + + +G V
Sbjct: 70 DIATSASPRQIQRLFWNARIIGKRFKLVHLVFKEKILEVSTFRSGEEAMDGNNNV----- 124
Query: 166 PYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFT 225
+G + D R RDF+INS +FDP ++ D+ N + D + K+ ++IP SF
Sbjct: 125 -FGSIDQDAKR------RDFSINSFYFDPSTAQLLDFNNAMEDFKKKKISSIIPLDDSFK 177
Query: 226 EDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285
ED R++R ++ + G S ++ A+ ++ + R SR+ E+N +L G +
Sbjct: 178 EDPVRMIRAIKYSVSTGFSLRFNVRMAIRKYANELSRTSTSRLTEEVNKILGSGHSREIF 237
Query: 286 CLLRRYNLLKILLPFHAAY 304
L++Y LL +LP + Y
Sbjct: 238 NDLQKYKLLVFMLPCFSVY 256
>gi|389681786|ref|ZP_10173130.1| poly(A) polymerase [Pseudomonas chlororaphis O6]
gi|388554321|gb|EIM17570.1| poly(A) polymerase [Pseudomonas chlororaphis O6]
Length = 467
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 138/268 (51%), Gaps = 20/268 (7%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE------------ 158
A +Q+R +F + IIGRRF + +H +IEV++F A H + E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFR--ANHPQNDEEEDSNQSSRNES 138
Query: 159 TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLI 218
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R +R +
Sbjct: 139 GRILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNHLVRLIG 192
Query: 219 PAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSY 278
+ ED R+LR +R AA+L K T + L+ + + +R+ E+ +
Sbjct: 193 DPRQRYQEDPVRMLRAVRFAAKLDFGIEKHTATPIRDLAPMLREIPSARLFEEVLKLFLS 252
Query: 279 GAAESSICLLRRYNLLKILLPFHAAYLD 306
G A + +L L L P A L+
Sbjct: 253 GHAADTFEMLVDLQLFDPLFPASAEALE 280
>gi|417853506|ref|ZP_12498872.1| poly(A) polymerase [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|338219366|gb|EGP05039.1| poly(A) polymerase [Pasteurella multocida subsp. multocida str.
Anand1_goat]
Length = 501
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 166/314 (52%), Gaps = 24/314 (7%)
Query: 32 EPQMCREMCSDSFNQEVDVS---NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYL 88
EP RE+ + S +++ +S N + GIT MI + + +++ L GF+AY+
Sbjct: 40 EPITTREIRNVSNSKQAKLSHHYNKSIFKASQYGITPRMINRNALGIVEKLHRHGFEAYI 99
Query: 89 VGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSF 147
VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF + + VIEV++F
Sbjct: 100 VGGCLRDLLLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATF 159
Query: 148 ---------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNK 198
E++AK + KE +LL YG E D R RDFT+N+L+++P N
Sbjct: 160 RASHNENNHESLAK--QSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNT 211
Query: 199 IYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSS 258
+ DY +GI DL+ KLR + + ED R+LR +R A+L + K + + L+
Sbjct: 212 LRDYFHGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAP 271
Query: 259 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPM 318
++ + +R+ E +L G + LLR+Y L + L P Y ++ G AE
Sbjct: 272 LLKNIPPARLFDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEK-GDSLAER-- 328
Query: 319 MLMRLFFNLDKLVS 332
M+++ + D+ V+
Sbjct: 329 MILKALTSTDERVA 342
>gi|423097357|ref|ZP_17085153.1| poly(A) polymerase [Pseudomonas fluorescens Q2-87]
gi|397887919|gb|EJL04402.1| poly(A) polymerase [Pseudomonas fluorescens Q2-87]
Length = 465
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 20/245 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRD+LL PKDFDV T+A +QIR +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQIRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 105 IHFGREIIEVATFR--ANHPQNDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 156
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 RDFTINALYYDPVSERILDYANGVHDIRNRLIRLIGDPKQRYQEDPVRMLRAVRFAAKLD 216
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K T + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 217 FGIEKHSATPIRELAPMLREIPSARLFEEVLKLFLSGNAADTFEMLVDLQLFDPLFPASA 276
Query: 303 AYLDQ 307
L+
Sbjct: 277 EALEH 281
>gi|421504231|ref|ZP_15951174.1| poly(A) polymerase [Pseudomonas mendocina DLHK]
gi|400345001|gb|EJO93368.1| poly(A) polymerase [Pseudomonas mendocina DLHK]
Length = 463
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 134/259 (51%), Gaps = 16/259 (6%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + + SR I R I + + V++ L+ G+QAYLVGGCVRDLLL PKDFDV T+
Sbjct: 21 STPEVLSSRQHPINRNEISRHAISVVERLQKAGYQAYLVGGCVRDLLLDIDPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + +IGRRF + VH +IEV++F GE +E
Sbjct: 81 ATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPQGEEEENSNQAARHESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP I DYA G+ D+R +R +
Sbjct: 141 ILRDNVYGTLEDDAQR------RDFTINALYYDPTQEHILDYARGMHDVRNHLVRLIGDP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L K + L+ + + +R+ E+ + G
Sbjct: 195 EQRYLEDPVRMLRAVRFAAKLDFDIEKHSAAPIRRLAPMLRDIPAARLFDEVLKLFLAGY 254
Query: 281 AESSICLLRRYNLLKILLP 299
AE + LL ++L L P
Sbjct: 255 AEYTFDLLLEHDLFAQLFP 273
>gi|350563658|ref|ZP_08932479.1| poly(A) polymerase [Thioalkalimicrobium aerophilum AL3]
gi|349778793|gb|EGZ33144.1| poly(A) polymerase [Thioalkalimicrobium aerophilum AL3]
Length = 470
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 170/345 (49%), Gaps = 28/345 (8%)
Query: 31 LEPQMCREMCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVG 90
+ P+ RE+ E+ +N +T GI +I + + + LK G++AYLVG
Sbjct: 16 ITPEQTREVTG----AEISGTNVQTYSGHQQGIHHRLIDKAALDTVFSLKRAGYEAYLVG 71
Query: 91 GCVRDLLLRRVPKDFDVITTANLKQIRRQF-HRSEIIGRRFPICRVHIKGSVIEVSSFET 149
G VRDL+L PKDFD++T A+ Q+++ F HR ++IGRRF + V +IEV++F
Sbjct: 72 GAVRDLMLGIEPKDFDIVTNASPDQVKQVFRHRCQLIGRRFRLAHVRYGRLIIEVATFRG 131
Query: 150 VAKHGEGKETV-----LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYAN 204
+ LL YG + D+ WR RDFTIN+L++DP + + DY +
Sbjct: 132 GQDDNHPARQIDDSGRLLRDNVYGTMDEDV--WR----RDFTINALYYDPKRDVVIDYVD 185
Query: 205 GISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLD 264
G DL+ ++ + ++ + ED R++R +R AA+LG + + + L ++ +
Sbjct: 186 GREDLQAAQIALIGDPWVRYREDPVRMIRAVRFAAKLGFNLAPSAEAPIAELGGLLKEVS 245
Query: 265 KSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLF 324
+R+ E+ + GAA LR Y+L K L P A L + + +++
Sbjct: 246 NARLFDEVLKLFHSGAAILVFEKLRHYDLFKHLFPLTDAILATENEHFPRQ---LVIEAL 302
Query: 325 FNLDKLVSCDRPAD------YTLWVGLLSFHQALVSD---PQDAF 360
+ D+ ++ D+P + LW ++ Q + D PQDA
Sbjct: 303 QSTDRRIAEDKPVNPAFLFAAMLWEPMMQARQDYLDDGLSPQDAL 347
>gi|146308605|ref|YP_001189070.1| poly(A) polymerase [Pseudomonas mendocina ymp]
gi|145576806|gb|ABP86338.1| poly(A) polymerase [Pseudomonas mendocina ymp]
Length = 463
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 92/259 (35%), Positives = 134/259 (51%), Gaps = 16/259 (6%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + + SR I R I + + V++ L+ G+QAYLVGGCVRDLLL PKDFDV T+
Sbjct: 21 STPEVLSSRQHPINRNEISRHAISVVERLQKAGYQAYLVGGCVRDLLLDIDPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + +IGRRF + VH +IEV++F GE +E
Sbjct: 81 ATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPQGEEEENSNQAARHESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP I DYA G+ D+R +R +
Sbjct: 141 ILRDNVYGTLEDDAQR------RDFTINALYYDPTQEHILDYARGMHDVRNHLVRLIGDP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L K + L+ + + +R+ E+ + G
Sbjct: 195 EQRYLEDPVRMLRAVRFAAKLDFDIEKHSAAPIRRLAPMLRDIPAARLFDEVLKLFLAGY 254
Query: 281 AESSICLLRRYNLLKILLP 299
AE + LL ++L L P
Sbjct: 255 AEYTFDLLLEHDLFAQLFP 273
>gi|378774575|ref|YP_005176818.1| poly(A) polymerase [Pasteurella multocida 36950]
gi|356597123|gb|AET15849.1| poly(A) polymerase [Pasteurella multocida 36950]
Length = 501
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 166/314 (52%), Gaps = 24/314 (7%)
Query: 32 EPQMCREMCSDSFNQEVDVS---NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYL 88
EP RE+ + S +++ +S N + GIT MI + + +++ L GF+AY+
Sbjct: 40 EPITTREIRNVSNSKQAKLSHHYNKSIFKASQYGITPRMINRNALGIVEKLHRHGFEAYI 99
Query: 89 VGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSF 147
VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF + + VIEV++F
Sbjct: 100 VGGCLRDLLLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATF 159
Query: 148 ---------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNK 198
E++AK + KE +LL YG E D R RDFT+N+L+++P N
Sbjct: 160 RASHNENNHESLAK--QSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNT 211
Query: 199 IYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSS 258
+ DY +GI DL+ KLR + + ED R+LR +R A+L + K + + L+
Sbjct: 212 LRDYFHGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAP 271
Query: 259 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPM 318
++ + +R+ E +L G + LLR+Y L + L P Y ++ G AE
Sbjct: 272 LLKNIPPARLFDECLKLLQAGYGVKTYKLLRQYRLFEQLFPSLMPYFTEK-GDSLAER-- 328
Query: 319 MLMRLFFNLDKLVS 332
M+++ + D+ V+
Sbjct: 329 MILKALTSTDERVA 342
>gi|406980089|gb|EKE01749.1| hypothetical protein ACD_21C00060G0002 [uncultured bacterium]
Length = 435
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/270 (35%), Positives = 139/270 (51%), Gaps = 14/270 (5%)
Query: 68 IPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIG 127
I Q + VL LK GF+AYLVGG VRDLLL PKDFD++T A +Q+R+ F +IG
Sbjct: 40 IGQNALKVLHGLKDAGFEAYLVGGGVRDLLLGLHPKDFDIVTDAQPEQVRKLFRNCILIG 99
Query: 128 RRFPICRVHIKGSVIEVSSFETVA-----KHGEGKETVLLSQIPYGCDEIDLVRWRNSIH 182
RRF + V ++EV++F A KH + + +LL YG E D WR
Sbjct: 100 RRFRLAHVRFGRDIVEVATFRAGAEHNSEKHKKSEHGMLLRDNVYGTIEEDA--WR---- 153
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFT+N+L++ + + DY +GI DL+ +R L + + ED R+LR +R+AA+LG
Sbjct: 154 RDFTVNALYYRIKDHSVIDYTDGIKDLKTKTIRMLGDPLVRYREDPVRMLRAIRLAAKLG 213
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
+ K + L +E + +R+ E+ G LL++Y+L L A
Sbjct: 214 FTIEKHTAAPIKELIPLLENISPARLFEEVVKWFRSGKTLEIFNLLQQYDLFAFLFGSAA 273
Query: 303 AYLDQQAGKITAENPMMLMRLFFNLDKLVS 332
A L KIT ML F N DK +
Sbjct: 274 ASLKGGKHKITT---AMLRHGFTNTDKRIG 300
>gi|407792507|ref|ZP_11139544.1| poly(A) polymerase [Idiomarina xiamenensis 10-D-4]
gi|407217620|gb|EKE87452.1| poly(A) polymerase [Idiomarina xiamenensis 10-D-4]
Length = 462
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 156/300 (52%), Gaps = 28/300 (9%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF AYLVGGCVRDLLL PKDFDV+T A+ +QI+R F
Sbjct: 29 ISRNQISENALKVLYRLHKSGFDAYLVGGCVRDLLLGITPKDFDVVTNAHPEQIKRLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF-----------ETVAKHGEGKETVLLSQIPYGCDE 171
++GRRF + + +IEV++F + +AK + E +LL YG +
Sbjct: 89 CRLVGRRFRLAHIVFGRDIIEVATFRGHHNGEQAQTDKIAKQND--EGLLLRDNVYGDID 146
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFT+N+L+++ IYDYANG+ D+ L+ + A + ED R+
Sbjct: 147 EDAER------RDFTVNALYYNIADFAIYDYANGVRDIENGVLQLIGDAETRYREDPVRM 200
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A +L + ++ + LS ++ + +R+ E+ + G A+++ +LR Y
Sbjct: 201 LRAIRFATKLNMRLADNVAAPIKQLSPLLQNIPAARLFEEVLKLFVAGKAQANFLMLRDY 260
Query: 292 NLLKILLPFHAAYL-DQQAGKITAENPMMLMR-LFFNLD-KLVSCDRPADYTLWVGLLSF 348
L + L P ++L ++QA P +R F + D ++ + R L+ LL +
Sbjct: 261 QLFQQLFPLLKSHLQNEQAA------PFQFLRQAFIDTDTRIANGQRVTPAYLFAALLWY 314
>gi|381153519|ref|ZP_09865388.1| poly(A) polymerase [Methylomicrobium album BG8]
gi|380885491|gb|EIC31368.1| poly(A) polymerase [Methylomicrobium album BG8]
Length = 458
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 130/242 (53%), Gaps = 11/242 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+RA I + + VL L+ G+ AYLVGGCVRDLLL R PKDFDV+T A+ +QI+ F
Sbjct: 36 ISRAQISEHALKVLYRLQKSGYDAYLVGGCVRDLLLGREPKDFDVVTNAHPEQIKGVFRN 95
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV-----LLSQIPYGCDEIDLVRW 177
+IGRRF + VH VIEV++F + + LL YG E D+ W
Sbjct: 96 CRLIGRRFRLAHVHFGNEVIEVATFRGFGNEQDDNQVTNDEGRLLRDNVYGTIEQDV--W 153
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
R RDFT+N+L+++ + DY G+ D + LR + + F ED R+LR +R
Sbjct: 154 R----RDFTVNALYYNIKDFSVVDYTGGMDDHKSGMLRLIGDPEIRFREDPVRMLRAVRF 209
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A +LG + D A++ + + + +R+ E+ + G A + +LR Y L ++L
Sbjct: 210 AVKLGFNIDPDCRKAIYGSADLLYSIPSARLYDEVLKLFLSGFALQTFEMLRHYGLFQVL 269
Query: 298 LP 299
P
Sbjct: 270 FP 271
>gi|407691793|ref|YP_006816582.1| polyA polymerase [Actinobacillus suis H91-0380]
gi|407387850|gb|AFU18343.1| polyA polymerase [Actinobacillus suis H91-0380]
Length = 510
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 148/273 (54%), Gaps = 18/273 (6%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
TV++ + IT P+ + V+++ L+ GF+AY+VGGC+RDLLL PKDFDV T A +
Sbjct: 70 TVNAGHYDITPKDFPKNALVIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPE 129
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFET-VAKHGEGK------ETVLLSQIP 166
+I++ F R +IGRRF + + + EV++F + H K E +LL
Sbjct: 130 EIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHSNHSSDKISKVSEEGMLLRDNV 189
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG D R RDFT+NSL++DP N I+D+ +GI+DL+ KLR + + + E
Sbjct: 190 YGTLREDAQR------RDFTVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQE 243
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K D + L+ ++ + +R+ E +L G +
Sbjct: 244 DPVRMLRAVRFMAKLDMFLDKPTDAPIRELAHLLKNIPAARLFDESLKLLQSGQGFKTYQ 303
Query: 287 LLRRYNLLK----ILLPFHAAYLDQQAGKITAE 315
L+R+Y L + +L+PF D A ++ ++
Sbjct: 304 LMRQYGLFEQLFPVLVPFFTERNDSNAERMLSK 336
>gi|312963066|ref|ZP_07777551.1| poly(A) polymerase [Pseudomonas fluorescens WH6]
gi|311282577|gb|EFQ61173.1| poly(A) polymerase [Pseudomonas fluorescens WH6]
Length = 467
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 136/267 (50%), Gaps = 16/267 (5%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + IIGRRF + +H +IEV++F + +E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R +R +
Sbjct: 141 ILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNNLIRLIGDP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L K + L+ + + +R+ E+ + G
Sbjct: 195 TQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLSGY 254
Query: 281 AESSICLLRRYNLLKILLPFHAAYLDQ 307
A + +L L L P A L+
Sbjct: 255 AADTFEMLVDLQLFDPLFPASAEALEH 281
>gi|197120710|ref|YP_002132661.1| poly(A) polymerase [Anaeromyxobacter sp. K]
gi|196170559|gb|ACG71532.1| poly(A) polymerase [Anaeromyxobacter sp. K]
Length = 556
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 142/286 (49%), Gaps = 25/286 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+ L+ QAYLVGGCVRDLLL PKDFDV T A+ ++R F +IGRRF +
Sbjct: 60 VIARLRHMHHQAYLVGGCVRDLLLGATPKDFDVATDAHPGEVRAIFRNCRLIGRRFRLAH 119
Query: 135 VHIK-GSVIEVSSF-----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTIN 188
V+ + G VIEV++F + GEG+ +L+++ D + +S+ RDFT+N
Sbjct: 120 VYFRAGKVIEVATFRKNPTDVAEDVGEGEGDLLITR-----DNVFGTAEEDSVRRDFTVN 174
Query: 189 SLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKD 248
LF+D ++ DY G +DL ++ T+ + ED R LR +R AARLG + D
Sbjct: 175 GLFYDVATGEVIDYVGGRADLEAHRISTIGDPEIRMREDPVRALRAVRFAARLGFTIAPD 234
Query: 249 IDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQ- 307
AM S + R +R++ E +L G + + LLR L ++LP A L+
Sbjct: 235 TFEAMRRTSGELARCAPARVLEETFKLLRCGGSARAFELLRACGALPVILPALGAALETW 294
Query: 308 QAGKITAENPMMLMRLFF----NLDKLVSCDRPADYTLWVGLLSFH 349
G+ R FF LD+LV + +G L H
Sbjct: 295 DDGR---------RRAFFAHLAALDRLVRSGAEVSEAVLLGALLMH 331
>gi|400756803|ref|NP_954291.2| nucleic acid-independent polyadenylating polymerase [Geobacter
sulfurreducens PCA]
gi|409913685|ref|YP_006892150.1| nucleic acid-independent polyadenylating polymerase [Geobacter
sulfurreducens KN400]
gi|298507269|gb|ADI85992.1| nucleic acid-independent polyadenylating polymerase [Geobacter
sulfurreducens KN400]
gi|399108114|gb|AAR36641.2| nucleic acid-independent polyadenylating polymerase [Geobacter
sulfurreducens PCA]
Length = 459
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 149/309 (48%), Gaps = 43/309 (13%)
Query: 60 NLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQ 119
N I+R+++ + VL L+ GF AYLVGGCVRDLLL R PKDFDV T A QI+R
Sbjct: 16 NHPISRSLVSPNALRVLYRLRDNGFIAYLVGGCVRDLLLGREPKDFDVATDATPNQIKRI 75
Query: 120 FHRSEIIGRRFPICRVHIKGSVIEVSSFETVA--KHGEGKETVLLSQIPYGCDEIDLVR- 176
F ++GRRF + +H +IEV++F ++ + GEG E V G DE + +R
Sbjct: 76 FRNCRLVGRRFRLAHIHFTDEIIEVATFRALSPPEQGEG-EPVADETGQRGGDEAERLRP 134
Query: 177 --------------------WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
+++ RDFT+N+L + I DYA G+ DL+ +RT
Sbjct: 135 PRHLVSDEGMVLRDNVFGTPGEDALRRDFTVNALAYCIADFSIIDYAGGMEDLQRGMIRT 194
Query: 217 LIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ + FTED R+LR +R AA LG + ++ AM L+ +I R R+ E+ +
Sbjct: 195 IGDPRVRFTEDPVRMLRAVRFAAVLGFAVEEETWQAMLDLAPAITRATAPRLYEEMLKLF 254
Query: 277 SYGAAESSICLLRRYNLLKILLPFHAAYL-------------------DQQAGKITAENP 317
G E + LLR+ L L P A+L D Q G +P
Sbjct: 255 LSGEGERAYQLLRQTGLFAHLFPGFEAWLGEETDGFPHARTGSALEWVDSQVGSGEPVSP 314
Query: 318 MMLMRLFFN 326
+L+ L F
Sbjct: 315 PLLLALLFG 323
>gi|387895642|ref|YP_006325939.1| poly(A) polymerase [Pseudomonas fluorescens A506]
gi|423693591|ref|ZP_17668111.1| poly(A) polymerase [Pseudomonas fluorescens SS101]
gi|387163486|gb|AFJ58685.1| poly(A) polymerase [Pseudomonas fluorescens A506]
gi|387999433|gb|EIK60762.1| poly(A) polymerase [Pseudomonas fluorescens SS101]
Length = 467
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 136/266 (51%), Gaps = 16/266 (6%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + IIGRRF + +H +IEV++F + +E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R +R +
Sbjct: 141 ILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNNLIRLIGDP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L K + L+ + + +R+ E+ + G
Sbjct: 195 TQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLSGY 254
Query: 281 AESSICLLRRYNLLKILLPFHAAYLD 306
A + +L L L P A L+
Sbjct: 255 AADTFEMLVDLQLFDPLFPASAEALE 280
>gi|332288744|ref|YP_004419596.1| hypothetical protein UMN179_00667 [Gallibacterium anatis UMN179]
gi|330431640|gb|AEC16699.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
Length = 502
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 136/248 (54%), Gaps = 18/248 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI +I + + V++ L++ GF+AY+VGGC+RD+LL + PKDFDV T A +QI++ F
Sbjct: 64 GIYPHLISRQALQVVEKLQNNGFEAYVVGGCLRDILLDKTPKDFDVATNARPEQIQKIFQ 123
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSFETVAKHG---------EGKETVLLSQIPYGCDE 171
R ++GRRF + + +IEV++F A H + E +LL YG E
Sbjct: 124 RQCRLVGRRFRLAHILFGREIIEVATFR--AAHDAINNDKLAKQSAEGMLLRDNVYGSLE 181
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFT+N+ ++DP +K+YD+ NGI DLR +L + + ED R+
Sbjct: 182 DDAAR------RDFTVNAFYYDPRKDKLYDFFNGIKDLRAGRLMLIGDPTQRYQEDPVRM 235
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + ++ L+S ++ + +R+ E +L G E + LL +Y
Sbjct: 236 LRAIRFMAKLDMFLDKKCEQPIYQLASLLQNIPAARLFDESLKLLQTGKGEKTYQLLYKY 295
Query: 292 NLLKILLP 299
L L P
Sbjct: 296 QLFHQLFP 303
>gi|229592622|ref|YP_002874741.1| putative polynucleotide adenylyltransferase [Pseudomonas
fluorescens SBW25]
gi|229364488|emb|CAY52328.1| putative polynucleotide adenylyltransferase [Pseudomonas
fluorescens SBW25]
Length = 467
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 136/266 (51%), Gaps = 16/266 (6%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + IIGRRF + +H +IEV++F + +E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R +R +
Sbjct: 141 ILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNNLIRLIGDP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L K + L+ + + +R+ E+ + G
Sbjct: 195 VQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLSGY 254
Query: 281 AESSICLLRRYNLLKILLPFHAAYLD 306
A + +L L L P A L+
Sbjct: 255 AADTFEMLVDLQLFDPLFPASAEALE 280
>gi|398857401|ref|ZP_10613101.1| poly(A) polymerase [Pseudomonas sp. GM79]
gi|398240992|gb|EJN26655.1| poly(A) polymerase [Pseudomonas sp. GM79]
Length = 466
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQNAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 105 IHFGREIIEVATFR--ANHPQNDEDEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 156
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 RDFTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLN 216
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K T + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 217 FGIEKHSATPIRELAPLLREIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASA 276
Query: 303 AYLD 306
A L+
Sbjct: 277 AALE 280
>gi|447918343|ref|YP_007398911.1| poly(A) polymerase [Pseudomonas poae RE*1-1-14]
gi|445202206|gb|AGE27415.1| poly(A) polymerase [Pseudomonas poae RE*1-1-14]
Length = 467
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 136/266 (51%), Gaps = 16/266 (6%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSNQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + IIGRRF + +H +IEV++F + +E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R +R +
Sbjct: 141 ILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVPDIRNNLIRLIGEP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L K + L+ + + +R+ E+ + G
Sbjct: 195 TQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLSGY 254
Query: 281 AESSICLLRRYNLLKILLPFHAAYLD 306
A + +L L L P A L+
Sbjct: 255 AADTFEMLVDLQLFDPLFPASAEALE 280
>gi|440739538|ref|ZP_20919049.1| poly(A) polymerase [Pseudomonas fluorescens BRIP34879]
gi|440379370|gb|ELQ15966.1| poly(A) polymerase [Pseudomonas fluorescens BRIP34879]
Length = 468
Score = 148 bits (374), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 136/266 (51%), Gaps = 16/266 (6%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSNQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + IIGRRF + +H +IEV++F + +E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R +R +
Sbjct: 141 ILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVPDIRNNLIRLIGEP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L K + L+ + + +R+ E+ + G
Sbjct: 195 TQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLSGY 254
Query: 281 AESSICLLRRYNLLKILLPFHAAYLD 306
A + +L L L P A L+
Sbjct: 255 AADTFEMLVDLQLFDPLFPASAEALE 280
>gi|220915422|ref|YP_002490726.1| poly(A) polymerase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953276|gb|ACL63660.1| poly(A) polymerase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 556
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 142/286 (49%), Gaps = 25/286 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+ L+ QAYLVGGCVRDLLL PKDFDV T A+ ++R F +IGRRF +
Sbjct: 60 VIARLRHMHHQAYLVGGCVRDLLLGATPKDFDVATDAHPGEVRAIFRNCRLIGRRFRLAH 119
Query: 135 VHIK-GSVIEVSSF-----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTIN 188
V+ + G VIEV++F + GEG+ +L+++ D + +S+ RDFT+N
Sbjct: 120 VYFRAGKVIEVATFRKNPTDVAEDVGEGEGDLLITR-----DNVFGTAEEDSVRRDFTVN 174
Query: 189 SLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKD 248
LF+D ++ DY G +DL ++ T+ + ED R LR +R AARLG + D
Sbjct: 175 GLFYDVATGEVIDYVGGRADLEAHRISTIGDPEIRMREDPVRALRAVRFAARLGFTIAPD 234
Query: 249 IDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQ- 307
AM S + R +R++ E +L G + + LLR L ++LP A L+
Sbjct: 235 TFEAMRRTSGELARCAPARVLEETFKLLRCGGSARAFELLRACGALPVILPALGAALETW 294
Query: 308 QAGKITAENPMMLMRLFF----NLDKLVSCDRPADYTLWVGLLSFH 349
G+ R FF LD+LV + +G L H
Sbjct: 295 DDGR---------RRAFFAHLAALDRLVRSGAEVSEAVLLGALLMH 331
>gi|429334479|ref|ZP_19215142.1| poly(A) polymerase [Pseudomonas putida CSV86]
gi|428760821|gb|EKX83072.1| poly(A) polymerase [Pseudomonas putida CSV86]
Length = 462
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 127/243 (52%), Gaps = 15/243 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRDLLL PKDFDV T+A +QIR +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDLLLGITPKDFDVATSATPEQIRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDF 185
VH +IEV++F E + + +L YG E D R RDF
Sbjct: 105 VHFGREIIEVATFRANHPTDEEENSHQSSRNESGRILRDNVYGTLEDDAQR------RDF 158
Query: 186 TINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSF 245
TIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 TINALYYDPVSERILDYANGVHDVRNRLVRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGI 218
Query: 246 CKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL 305
K + L+ + + +R+ E + G A + +L L L P A L
Sbjct: 219 EKHTVLPIRELAPMLREIPAARLFEESLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 278
Query: 306 DQQ 308
++Q
Sbjct: 279 EEQ 281
>gi|402701811|ref|ZP_10849790.1| poly(A) polymerase [Pseudomonas fragi A22]
Length = 464
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 137/269 (50%), Gaps = 20/269 (7%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE------------ 158
A +Q+R +F + IIGRRF + +H +IEV++F A H + E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFR--ANHPQNDEEEDSNQSSRNES 138
Query: 159 TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLI 218
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R LR +
Sbjct: 139 GRILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNRLLRLIG 192
Query: 219 PAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSY 278
+ ED R+LR +R AA+L K + L+ + + +R+ E+ +
Sbjct: 193 DPQQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLS 252
Query: 279 GAAESSICLLRRYNLLKILLPFHAAYLDQ 307
G A + +L L L P A L+
Sbjct: 253 GNACDTFEMLVDLQLFDPLFPASAEALEH 281
>gi|359443762|ref|ZP_09233583.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20429]
gi|392535129|ref|ZP_10282266.1| poly(A) polymerase [Pseudoalteromonas arctica A 37-1-2]
gi|358034318|dbj|GAA69832.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20429]
Length = 493
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 165/322 (51%), Gaps = 35/322 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R + VL LK G+ AYLVGGC+RD+LL + PKDFDV+T A Q+++ F
Sbjct: 71 GISRKQFSPNAIKVLYRLKDGGYDAYLVGGCIRDILLGQQPKDFDVVTNATPDQVKKLFR 130
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVR----- 176
+IGRRF + + +IEV+ T+ H E +E +QI DE L+R
Sbjct: 131 NCRLIGRRFRLAHIVFGREIIEVA---TMRGHHEAQEDK--NQISQSSDEGQLLRDNVFG 185
Query: 177 --WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDF+IN+L++ I+DYANG++ ++ ++ + + ED R+LR
Sbjct: 186 SIEEDAERRDFSINALYYSIKDFSIHDYANGLAAIKAKQIELIGDPETRYREDPVRMLRA 245
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L +S + + L+S ++ + +R+ E+ + G AE++ +LR+Y L
Sbjct: 246 VRFATKLDMSIAPKSEKPISELASLLDNIPPARLFEEILKLFLNGKAEANFLMLRKYGLF 305
Query: 295 KILLPFHAAYLDQQAGKITAENP-----MMLMRLFFNLDKLVSCDR---PA---DYTLWV 343
+ L P + KI +NP ++ ++F N DK ++ D+ PA LW
Sbjct: 306 RSLFP--------ELDKILDKNPSGLEHTLIQQMFQNTDKRINADKKVTPAFIFAALLWF 357
Query: 344 GLLSFHQALVSDPQ----DAFV 361
LL + + S Q DAF
Sbjct: 358 PLLERTKKIQSQEQLAEYDAFA 379
>gi|15599921|ref|NP_253415.1| poly(A) polymerase [Pseudomonas aeruginosa PAO1]
gi|107103826|ref|ZP_01367744.1| hypothetical protein PaerPA_01004897 [Pseudomonas aeruginosa PACS2]
gi|218893822|ref|YP_002442691.1| poly(A) polymerase [Pseudomonas aeruginosa LESB58]
gi|254238536|ref|ZP_04931859.1| poly(A) polymerase [Pseudomonas aeruginosa C3719]
gi|254244371|ref|ZP_04937693.1| poly(A) polymerase [Pseudomonas aeruginosa 2192]
gi|296391553|ref|ZP_06881028.1| poly(A) polymerase [Pseudomonas aeruginosa PAb1]
gi|313109707|ref|ZP_07795647.1| LOW QUALITY PROTEIN: poly(A) polymerase [Pseudomonas aeruginosa
39016]
gi|355642709|ref|ZP_09052843.1| hypothetical protein HMPREF1030_01929 [Pseudomonas sp. 2_1_26]
gi|386060895|ref|YP_005977417.1| poly(A) polymerase [Pseudomonas aeruginosa M18]
gi|386063776|ref|YP_005979080.1| poly(A) polymerase [Pseudomonas aeruginosa NCGM2.S1]
gi|392986399|ref|YP_006484986.1| poly(A) polymerase [Pseudomonas aeruginosa DK2]
gi|416856609|ref|ZP_11912178.1| poly(A) polymerase [Pseudomonas aeruginosa 138244]
gi|416873689|ref|ZP_11917664.1| poly(A) polymerase [Pseudomonas aeruginosa 152504]
gi|418586275|ref|ZP_13150319.1| poly(A) polymerase [Pseudomonas aeruginosa MPAO1/P1]
gi|418592907|ref|ZP_13156767.1| poly(A) polymerase [Pseudomonas aeruginosa MPAO1/P2]
gi|419751501|ref|ZP_14277912.1| poly(A) polymerase [Pseudomonas aeruginosa PADK2_CF510]
gi|420141921|ref|ZP_14649556.1| poly(A) polymerase [Pseudomonas aeruginosa CIG1]
gi|421156247|ref|ZP_15615697.1| poly(A) polymerase [Pseudomonas aeruginosa ATCC 14886]
gi|421163312|ref|ZP_15622033.1| poly(A) polymerase [Pseudomonas aeruginosa ATCC 25324]
gi|421182801|ref|ZP_15640271.1| poly(A) polymerase [Pseudomonas aeruginosa E2]
gi|421519288|ref|ZP_15965959.1| poly(A) polymerase [Pseudomonas aeruginosa PAO579]
gi|424944487|ref|ZP_18360250.1| poly(A) polymerase [Pseudomonas aeruginosa NCMG1179]
gi|451988322|ref|ZP_21936456.1| Poly(A) polymerase [Pseudomonas aeruginosa 18A]
gi|9950987|gb|AAG08113.1|AE004886_5 poly(A) polymerase [Pseudomonas aeruginosa PAO1]
gi|126170467|gb|EAZ55978.1| poly(A) polymerase [Pseudomonas aeruginosa C3719]
gi|126197749|gb|EAZ61812.1| poly(A) polymerase [Pseudomonas aeruginosa 2192]
gi|218774050|emb|CAW29866.1| poly(A) polymerase [Pseudomonas aeruginosa LESB58]
gi|310882149|gb|EFQ40743.1| LOW QUALITY PROTEIN: poly(A) polymerase [Pseudomonas aeruginosa
39016]
gi|334841731|gb|EGM20354.1| poly(A) polymerase [Pseudomonas aeruginosa 138244]
gi|334844379|gb|EGM22954.1| poly(A) polymerase [Pseudomonas aeruginosa 152504]
gi|346060933|dbj|GAA20816.1| poly(A) polymerase [Pseudomonas aeruginosa NCMG1179]
gi|347307201|gb|AEO77315.1| poly(A) polymerase [Pseudomonas aeruginosa M18]
gi|348032335|dbj|BAK87695.1| poly(A) polymerase [Pseudomonas aeruginosa NCGM2.S1]
gi|354830147|gb|EHF14202.1| hypothetical protein HMPREF1030_01929 [Pseudomonas sp. 2_1_26]
gi|375043415|gb|EHS36041.1| poly(A) polymerase [Pseudomonas aeruginosa MPAO1/P1]
gi|375048256|gb|EHS40783.1| poly(A) polymerase [Pseudomonas aeruginosa MPAO1/P2]
gi|384401963|gb|EIE48315.1| poly(A) polymerase [Pseudomonas aeruginosa PADK2_CF510]
gi|392321904|gb|AFM67284.1| poly(A) polymerase [Pseudomonas aeruginosa DK2]
gi|403245316|gb|EJY59137.1| poly(A) polymerase [Pseudomonas aeruginosa CIG1]
gi|404345207|gb|EJZ71559.1| poly(A) polymerase [Pseudomonas aeruginosa PAO579]
gi|404519292|gb|EKA30060.1| poly(A) polymerase [Pseudomonas aeruginosa ATCC 14886]
gi|404529123|gb|EKA39174.1| poly(A) polymerase [Pseudomonas aeruginosa ATCC 25324]
gi|404541243|gb|EKA50608.1| poly(A) polymerase [Pseudomonas aeruginosa E2]
gi|451753975|emb|CCQ88979.1| Poly(A) polymerase [Pseudomonas aeruginosa 18A]
gi|453043978|gb|EME91705.1| poly(A) polymerase [Pseudomonas aeruginosa PA21_ST175]
Length = 467
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 128/242 (52%), Gaps = 19/242 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++IL+ G+QAY+VGGCVRD +L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 VVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H EG++ +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--AHHPEGQDDGDSRASSNESGRILRDNVYGSLEDDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L+FD ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYFDVTSERLLDYANGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E+ + G AE + LL Y L L P A
Sbjct: 217 EIEKHSAAPIRRLAPLLREIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFPASAK 276
Query: 304 YL 305
L
Sbjct: 277 AL 278
>gi|404398381|ref|ZP_10989965.1| poly(A) polymerase [Pseudomonas fuscovaginae UPB0736]
Length = 462
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 126/235 (53%), Gaps = 16/235 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD+LL PKDFDV T+A +QIR +F + IIGRRF +
Sbjct: 45 IVERLQNAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQIRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETV----------LLSQIPYGCDEIDLVRWRNSIHRD 184
+H +IEV++F E +E +L YG E D R RD
Sbjct: 105 IHFGREIIEVATFRANHPQDEDEEDSNQSSRNESGRILRDNVYGTLEDDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPVSERILDYANGVHDIRNRLIRLIGDPTRRYQEDPVRMLRAVRFAAKLDFG 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ + L++ + + +R+ E+ + G A + +L NL + L P
Sbjct: 219 IERHTVAPIRDLAAMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLNLFEPLFP 273
>gi|302879356|ref|YP_003847920.1| poly(A) polymerase [Gallionella capsiferriformans ES-2]
gi|302582145|gb|ADL56156.1| poly(A) polymerase [Gallionella capsiferriformans ES-2]
Length = 453
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 151/294 (51%), Gaps = 15/294 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
G+ R I + V L++ GF+A++VGG VRDLLL ++PKDFDV T A ++++R F
Sbjct: 31 GVPREQISYGAKRVTDGLQAAGFKAFVVGGAVRDLLLDKIPKDFDVATDATPEEVKRVFR 90
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---LLSQIPYGCDEIDLVRWR 178
RS IIGRRF + V ++EV++F + + + LL +G E D R
Sbjct: 91 RSRIIGRRFRLVHVMFGEELVEVATFRCMIDTEDAQTDAHGRLLRDNEFGDQEQDAAR-- 148
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+LF+DP +IYDY G D R LR + + + ED R+LR +R++
Sbjct: 149 ----RDFTANALFYDPTTQEIYDYHQGYQDTRNGVLRIIGDPLVRYREDPVRMLRAVRLS 204
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+LG++ + L S ++ + ++R++ E+ ML G + I LR+ L LL
Sbjct: 205 AKLGIALDPVTAAPIAQLKSLLDNVPEARMLDEVLKMLLSGRSVECIQQLRKMELHHGLL 264
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
P ++Q G+ +M N D+ +S ++ L +H+ L
Sbjct: 265 PLLDVIMEQPMGE------KFIMLALKNTDERLSQEKSVSPAFLFACLLWHEVL 312
>gi|297744918|emb|CBI38415.3| unnamed protein product [Vitis vinifera]
Length = 518
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 81/104 (77%)
Query: 318 MMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYHGKWKEG 377
MM M+LFFNLDKLV+CDRP D +LWVGLL+FH ALV+ PQDA VVW +SVLYHGKW EG
Sbjct: 1 MMFMKLFFNLDKLVTCDRPCDCSLWVGLLAFHMALVNKPQDASVVWTLSSVLYHGKWTEG 60
Query: 378 VKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDC 421
VKFAR A P+ F PEI + +SDE+LA +V+ELA VQDC
Sbjct: 61 VKFARKHALAPISFSPEILVECDSKSDEELAERVSELASLVQDC 104
>gi|419845957|ref|ZP_14369217.1| polynucleotide adenylyltransferase [Haemophilus parainfluenzae
HK2019]
gi|386414738|gb|EIJ29285.1| polynucleotide adenylyltransferase [Haemophilus parainfluenzae
HK2019]
Length = 438
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 140/264 (53%), Gaps = 18/264 (6%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
+V + + GI M + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A
Sbjct: 8 SVKASHFGINPRMFSRNAITVVEKLQRQGYEAYIVGGCLRDLLLGKHPKDFDVATNARPD 67
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQ 164
QI+ F R ++GRRF + + VIEV++F A H + + E +LL
Sbjct: 68 QIQAVFQRQCRLVGRRFRLAHIMFGRDVIEVATFR--ANHSDARSENQAKQSDEGMLLRD 125
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
YG E D R RDFT+N+L+++P N + DY NGI DL+ KLR + +
Sbjct: 126 NVYGTIEQDAER------RDFTVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRY 179
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R A+L + K + + L+ ++ + +R+ E +L G +
Sbjct: 180 QEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQSGNGVKT 239
Query: 285 ICLLRRYNLLKILLPFHAAYLDQQ 308
LLR+Y L + L P Y ++
Sbjct: 240 YKLLRQYGLFEQLFPSLTPYFTEK 263
>gi|398872251|ref|ZP_10627551.1| poly(A) polymerase [Pseudomonas sp. GM74]
gi|398203594|gb|EJM90413.1| poly(A) polymerase [Pseudomonas sp. GM74]
Length = 466
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 126/242 (52%), Gaps = 16/242 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETV----------LLSQIPYGCDEIDLVRWRNSIHRD 184
+H +IEV++F E +E +L YG E D R RD
Sbjct: 105 IHFGREIIEVATFRANHPQNEDEEDSNQSSRNESGRILRDNVYGTLEEDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPTQRYQEDPVRMLRAVRFAAKLNFG 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 219 IEKHSALPIRGLAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEA 278
Query: 305 LD 306
L+
Sbjct: 279 LE 280
>gi|398922426|ref|ZP_10660264.1| poly(A) polymerase [Pseudomonas sp. GM49]
gi|398162793|gb|EJM50975.1| poly(A) polymerase [Pseudomonas sp. GM49]
Length = 466
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 126/242 (52%), Gaps = 16/242 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETV----------LLSQIPYGCDEIDLVRWRNSIHRD 184
+H +IEV++F E +E +L YG E D R RD
Sbjct: 105 IHFGREIIEVATFRANHPQNEDEEDSNQSSRNESGRILRDNVYGTLEEDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPTQRYQEDPVRMLRAVRFAAKLNFG 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 219 IEKHSALPIRGLAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEA 278
Query: 305 LD 306
L+
Sbjct: 279 LE 280
>gi|86156707|ref|YP_463492.1| hypothetical protein Adeh_0279 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773218|gb|ABC80055.1| hypothetical protein Adeh_0279 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 549
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 142/286 (49%), Gaps = 25/286 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+ L+ QAYLVGGCVRDLLL PKDFDV T A+ ++R F +IGRRF +
Sbjct: 60 VIARLRHMHHQAYLVGGCVRDLLLGATPKDFDVATDAHPGEVRAIFRNCRLIGRRFRLAH 119
Query: 135 VHIK-GSVIEVSSF-----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTIN 188
V+ + G VIEV++F + GEG+ +L+++ D + +S+ RDFT+N
Sbjct: 120 VYFRAGKVIEVATFRKNPTDVAEDVGEGEGDLLITR-----DNVFGTAEEDSVRRDFTVN 174
Query: 189 SLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKD 248
LF+D ++ DY G +DL ++ T+ + ED R LR +R AARLG + D
Sbjct: 175 GLFYDVATGEVIDYVGGRADLEAHRISTIGDPEIRMREDPVRALRAVRFAARLGFTIAPD 234
Query: 249 IDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQ- 307
AM + + R +R++ E +L G + + LLR L ++LP A L+
Sbjct: 235 TFEAMRRTAGELARCAPARVLEETFKLLRCGGSARAFELLRACGALPVILPALGAALETW 294
Query: 308 QAGKITAENPMMLMRLFF----NLDKLVSCDRPADYTLWVGLLSFH 349
G+ R FF LD+LV + +G L H
Sbjct: 295 DDGR---------RRAFFAHLAALDRLVRSGAEVSEAVLLGALLMH 331
>gi|385330067|ref|YP_005884018.1| polyA polymerase [Marinobacter adhaerens HP15]
gi|311693217|gb|ADP96090.1| polyA polymerase [Marinobacter adhaerens HP15]
Length = 443
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 16/247 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R++I +P+ VL L G++AYLVGG VRD+LL PKDFD+ T A +++ F
Sbjct: 24 VSRSVISEPAKKVLHRLNKSGYEAYLVGGGVRDILLGGKPKDFDIATNATPEEVHDLFRN 83
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG----------EGKETVLLSQIPYGCDEI 172
S +IGRRF I V VIEV++F A + +LL YG E
Sbjct: 84 SRLIGRRFRIVHVVFGREVIEVTTFRGNAAEADTDTDDDDRRTSEHGLLLRDNVYGNQEE 143
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +R RDFT+N+L++ + D+ANGI DLR +LR + + ED R+L
Sbjct: 144 DALR------RDFTVNALYYCIRDFTVIDFANGIEDLRNRQLRLIGDPETRYREDPVRML 197
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R AA+LG + + + L+ + + +R+ E+ + S G E++ LL RYN
Sbjct: 198 RAIRFAAKLGFDIEPETEAPIGELAPLLTHIPPARLFDEVLKLFSAGHGEATYDLLTRYN 257
Query: 293 LLKILLP 299
LL+ L P
Sbjct: 258 LLEPLFP 264
>gi|419801304|ref|ZP_14326539.1| polynucleotide adenylyltransferase [Haemophilus parainfluenzae
HK262]
gi|385193868|gb|EIF41216.1| polynucleotide adenylyltransferase [Haemophilus parainfluenzae
HK262]
Length = 437
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 140/264 (53%), Gaps = 18/264 (6%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
+V + + GI M + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A
Sbjct: 8 SVKASHFGINPRMFSRNAITVVEKLQRQGYEAYIVGGCLRDLLLGKHPKDFDVATNARPD 67
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQ 164
QI+ F R ++GRRF + + VIEV++F A H + + E +LL
Sbjct: 68 QIQAVFQRQCRLVGRRFRLAHIMFGRDVIEVATFR--ANHSDARSENQAKQSDEGMLLRD 125
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
YG E D R RDFT+N+L+++P N + DY NGI DL+ KLR + +
Sbjct: 126 NVYGTIEQDAER------RDFTVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRY 179
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R A+L + K + + L+ ++ + +R+ E +L G +
Sbjct: 180 QEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQSGNGVKT 239
Query: 285 ICLLRRYNLLKILLPFHAAYLDQQ 308
LLR+Y L + L P Y ++
Sbjct: 240 YKLLRQYGLFEQLFPSLTPYFTEK 263
>gi|307244988|ref|ZP_07527085.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307253941|ref|ZP_07535793.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307258396|ref|ZP_07540137.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306854153|gb|EFM86361.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306863145|gb|EFM95087.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306867580|gb|EFM99427.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
Length = 510
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 138/253 (54%), Gaps = 14/253 (5%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
TV++ + IT P+ + +++ L+ GF+AY+VGGC+RDLLL PKDFDV T A +
Sbjct: 70 TVNAGHYDITPKDFPKNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPE 129
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFET-VAKHGEGK------ETVLLSQIP 166
+I++ F R +IGRRF + + + EV++F A H K E +LL
Sbjct: 130 EIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNV 189
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG D R RDF++NSL++DP N I+D+ +GI+DL+ KLR + + + E
Sbjct: 190 YGTLREDAQR------RDFSVNSLYYDPKHNLIFDFFDGITDLKAGKLRLIGDPVVRYQE 243
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K DT + L+ ++ + +R+ E + G +
Sbjct: 244 DPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQ 303
Query: 287 LLRRYNLLKILLP 299
L+R+Y L + L P
Sbjct: 304 LMRQYGLFEQLFP 316
>gi|53728854|ref|ZP_00134674.2| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
Length = 492
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 138/253 (54%), Gaps = 14/253 (5%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
TV++ + IT P+ + +++ L+ GF+AY+VGGC+RDLLL PKDFDV T A +
Sbjct: 70 TVNAGHYDITPKDFPKNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPE 129
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFET-VAKHGEGK------ETVLLSQIP 166
+I++ F R +IGRRF + + + EV++F A H K E +LL
Sbjct: 130 EIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNV 189
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG D R RDF++NSL++DP N I+D+ +GI+DL+ KLR + + + E
Sbjct: 190 YGTLREDAQR------RDFSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQE 243
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K DT + L+ ++ + +R+ E + G +
Sbjct: 244 DPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQ 303
Query: 287 LLRRYNLLKILLP 299
L+R+Y L + L P
Sbjct: 304 LMRQYGLFEQLFP 316
>gi|303250925|ref|ZP_07337116.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|303252000|ref|ZP_07338171.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307247163|ref|ZP_07529214.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|307251707|ref|ZP_07533611.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307260634|ref|ZP_07542326.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|307262766|ref|ZP_07544393.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|302649430|gb|EFL79615.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|302650231|gb|EFL80396.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306856301|gb|EFM88453.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306860793|gb|EFM92802.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306869711|gb|EFN01496.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306871911|gb|EFN03628.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 510
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 138/253 (54%), Gaps = 14/253 (5%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
TV++ + IT P+ + +++ L+ GF+AY+VGGC+RDLLL PKDFDV T A +
Sbjct: 70 TVNAGHYDITPKDFPKNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPE 129
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFET-VAKHGEGK------ETVLLSQIP 166
+I++ F R +IGRRF + + + EV++F A H K E +LL
Sbjct: 130 EIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNV 189
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG D R RDF++NSL++DP N I+D+ +GI+DL+ KLR + + + E
Sbjct: 190 YGTLREDAQR------RDFSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQE 243
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K DT + L+ ++ + +R+ E + G +
Sbjct: 244 DPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQ 303
Query: 287 LLRRYNLLKILLP 299
L+R+Y L + L P
Sbjct: 304 LMRQYGLFEQLFP 316
>gi|165975632|ref|YP_001651225.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|165875733|gb|ABY68781.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 510
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 138/253 (54%), Gaps = 14/253 (5%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
TV++ + IT P+ + +++ L+ GF+AY+VGGC+RDLLL PKDFDV T A +
Sbjct: 70 TVNAGHYDITPKDFPKNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPE 129
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFET-VAKHGEGK------ETVLLSQIP 166
+I++ F R +IGRRF + + + EV++F A H K E +LL
Sbjct: 130 EIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNV 189
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG D R RDF++NSL++DP N I+D+ +GI+DL+ KLR + + + E
Sbjct: 190 YGTLREDAQR------RDFSVNSLYYDPKHNLIFDFFDGITDLKAGKLRLIGDPVVRYQE 243
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K DT + L+ ++ + +R+ E + G +
Sbjct: 244 DPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQ 303
Query: 287 LLRRYNLLKILLP 299
L+R+Y L + L P
Sbjct: 304 LMRQYGLFEQLFP 316
>gi|260582019|ref|ZP_05849814.1| polyA polymerase [Haemophilus influenzae NT127]
gi|260094909|gb|EEW78802.1| polyA polymerase [Haemophilus influenzae NT127]
Length = 480
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 133/245 (54%), Gaps = 18/245 (7%)
Query: 74 VVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPI 132
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 66 TVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRL 125
Query: 133 CRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHR 183
+ +IEV++F A H + + E +LL YG E D VR R
Sbjct: 126 AHIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR------R 177
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 178 DFTVNALYYNPQDNTLRDYFEGIKDLKASKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDM 237
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + + L+ ++ + +R+ E +L G + LLR+Y L + L P +
Sbjct: 238 FLEKPSEQPISELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSP 297
Query: 304 YLDQQ 308
Y ++
Sbjct: 298 YFTEK 302
>gi|126207664|ref|YP_001052889.1| poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|126096456|gb|ABN73284.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 510
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 138/253 (54%), Gaps = 14/253 (5%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
TV++ + IT P+ + +++ L+ GF+AY+VGGC+RDLLL PKDFDV T A +
Sbjct: 70 TVNAGHYDITPKDFPKNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPE 129
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFET-VAKHGEGK------ETVLLSQIP 166
+I++ F R +IGRRF + + + EV++F A H K E +LL
Sbjct: 130 EIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNV 189
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG D R RDF++NSL++DP N I+D+ +GI+DL+ KLR + + + E
Sbjct: 190 YGTLREDAQR------RDFSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQE 243
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K DT + L+ ++ + +R+ E + G +
Sbjct: 244 DPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQ 303
Query: 287 LLRRYNLLKILLP 299
L+R+Y L + L P
Sbjct: 304 LMRQYGLFEQLFP 316
>gi|398907815|ref|ZP_10654068.1| poly(A) polymerase [Pseudomonas sp. GM50]
gi|398170958|gb|EJM58876.1| poly(A) polymerase [Pseudomonas sp. GM50]
Length = 546
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 125 IVERLQNAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 184
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 185 IHFGREIIEVATFR--ANHPQNDEDEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 236
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 237 RDFTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLN 296
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K T + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 297 FGIEKHSATPIRELAPLLREIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASA 356
Query: 303 AYLD 306
A L+
Sbjct: 357 AALE 360
>gi|426411527|ref|YP_007031626.1| Poly(A) polymerase, PcnB [Pseudomonas sp. UW4]
gi|426269744|gb|AFY21821.1| Poly(A) polymerase, PcnB [Pseudomonas sp. UW4]
Length = 466
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 126/242 (52%), Gaps = 16/242 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETV----------LLSQIPYGCDEIDLVRWRNSIHRD 184
+H +IEV++F E +E +L YG E D R RD
Sbjct: 105 IHFGREIIEVATFRANHPQNEDEEDSNQSSRNESGRILRDNVYGTLEEDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFG 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 219 IEKHSALPIRDLAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEA 278
Query: 305 LD 306
L+
Sbjct: 279 LE 280
>gi|346643233|ref|YP_262347.2| poly(A) polymerase [Pseudomonas protegens Pf-5]
gi|341580385|gb|AAY94489.2| poly(A) polymerase [Pseudomonas protegens Pf-5]
Length = 463
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 135/266 (50%), Gaps = 16/266 (6%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q++ +F + IIGRRF + +H +IEV++F E E
Sbjct: 81 ATPEQVKAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNEDDEDSNQSSRNESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R +R +
Sbjct: 141 ILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNNLIRLIGDP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L K + L+ + + +R+ E+ + G
Sbjct: 195 RQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPMLREIPSARLFEEVLKLFLSGY 254
Query: 281 AESSICLLRRYNLLKILLPFHAAYLD 306
A + +L L L P A L+
Sbjct: 255 AADTFEMLVDLQLFDPLFPASAEALE 280
>gi|226946294|ref|YP_002801367.1| polynucleotide adenylyltransferase PcnB [Azotobacter vinelandii DJ]
gi|226721221|gb|ACO80392.1| polynucleotide adenylyltransferase; PcnB [Azotobacter vinelandii
DJ]
Length = 463
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 160/329 (48%), Gaps = 41/329 (12%)
Query: 43 SFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVP 102
S N+ S + + S+ + RA I + + V++ L++ G+QAY+VGGCVRDLLL P
Sbjct: 12 SLNRPHPRSTPEVLGSQQHSLRRADISRHAVSVVERLQNAGYQAYVVGGCVRDLLLDIEP 71
Query: 103 KDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFET------------- 149
KDFDV T+A +Q+R +F + +IGRRF + VH +IEV++F
Sbjct: 72 KDFDVATSATPEQVRAEFRNARVIGRRFKLAHVHFGREIIEVATFRAHHPDDEEDDEDNH 131
Query: 150 -VAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISD 208
+H G+ +L YG E D R RDFTIN+L+FD ++I DYA+G+ D
Sbjct: 132 LAMRHESGR---ILRDNVYGTLEEDAQR------RDFTINALYFDIAHDRILDYAHGVHD 182
Query: 209 LRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRI 268
+R +R + + ED R+LR +R AA+L + L+ + + R+
Sbjct: 183 IRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAKLDFDIEHHSAAPIRRLAPLLRDIPAPRL 242
Query: 269 MMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRL----F 324
E+ + G AE + LL Y+L L P AA L++ NP + RL
Sbjct: 243 FDEVLKLFLSGYAEDTFELLLEYDLFAPLFPATAAALER--------NPDYVGRLVRHAL 294
Query: 325 FNLDKLVSCDRPADYT------LWVGLLS 347
N D+ ++ +P LW L S
Sbjct: 295 ANTDERIAQGKPVTPAFLFAALLWPALPS 323
>gi|260580633|ref|ZP_05848460.1| polyA polymerase [Haemophilus influenzae RdAW]
gi|260092695|gb|EEW76631.1| polyA polymerase [Haemophilus influenzae RdAW]
Length = 480
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 133/244 (54%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 67 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 126
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D R RD
Sbjct: 127 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR------RD 178
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 179 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 238
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y L + L P +AY
Sbjct: 239 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSAY 298
Query: 305 LDQQ 308
++
Sbjct: 299 FTEK 302
>gi|408479023|ref|ZP_11185242.1| poly(A) polymerase [Pseudomonas sp. R81]
Length = 467
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 136/266 (51%), Gaps = 16/266 (6%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + IIGRRF + +H +IEV++F + +E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP +I DYANG+ D+R +R +
Sbjct: 141 ILRDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNNLIRLIGDP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L + + L+ + + +R+ E+ + G
Sbjct: 195 VQRYQEDPVRMLRAVRFAAKLNFGIERHTAAPIRELAPMLREIPSARLFEEVLKLFLSGY 254
Query: 281 AESSICLLRRYNLLKILLPFHAAYLD 306
A + +L L L P A L+
Sbjct: 255 AADTFEMLVDLQLFDPLFPASAEALE 280
>gi|307256202|ref|ZP_07537989.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306865383|gb|EFM97279.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 510
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 138/253 (54%), Gaps = 14/253 (5%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
TV++ + IT P+ + +++ L+ GF+AY+VGGC+RDLLL PKDFDV T A +
Sbjct: 70 TVNAGHYDITPKDFPKNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPE 129
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFET-VAKHGEGK------ETVLLSQIP 166
+I++ F R +IGRRF + + + EV++F A H K E +LL
Sbjct: 130 EIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNV 189
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG D R RDF++NSL++DP N I+D+ +GI+DL+ KLR + + + E
Sbjct: 190 YGTLREDAQR------RDFSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQE 243
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K DT + L+ ++ + +R+ E + G +
Sbjct: 244 DPVRMLRAVRFMAKLDMFLDKASDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQ 303
Query: 287 LLRRYNLLKILLP 299
L+R+Y L + L P
Sbjct: 304 LMRQYGLFEQLFP 316
>gi|398949258|ref|ZP_10673172.1| poly(A) polymerase [Pseudomonas sp. GM33]
gi|398159489|gb|EJM47789.1| poly(A) polymerase [Pseudomonas sp. GM33]
Length = 466
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 126/242 (52%), Gaps = 16/242 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETV----------LLSQIPYGCDEIDLVRWRNSIHRD 184
+H +IEV++F E +E +L YG E D R RD
Sbjct: 105 IHFGREIIEVATFRANHPQNEDEEDSNQSSRNESGRILRDNVYGTLEEDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFG 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 219 IEKHSALPIRDLAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEA 278
Query: 305 LD 306
L+
Sbjct: 279 LE 280
>gi|398931624|ref|ZP_10665267.1| poly(A) polymerase [Pseudomonas sp. GM48]
gi|398163231|gb|EJM51399.1| poly(A) polymerase [Pseudomonas sp. GM48]
Length = 466
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 126/242 (52%), Gaps = 16/242 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETV----------LLSQIPYGCDEIDLVRWRNSIHRD 184
+H +IEV++F E +E +L YG E D R RD
Sbjct: 105 IHFGREIIEVATFRANHPQNEDEEDSNQSSRNESGRILRDNVYGTLEEDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFG 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 219 IEKHSALPIRDLAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEA 278
Query: 305 LD 306
L+
Sbjct: 279 LE 280
>gi|224825650|ref|ZP_03698754.1| poly(A) polymerase [Pseudogulbenkiania ferrooxidans 2002]
gi|224601874|gb|EEG08053.1| poly(A) polymerase [Pseudogulbenkiania ferrooxidans 2002]
Length = 455
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 131/248 (52%), Gaps = 6/248 (2%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
G+ R + + V L+ GF AY+VGG VRDLLL PKDFDV T+A +Q+ F
Sbjct: 33 GVRRDRLSHAALKVTSRLQEAGFTAYVVGGAVRDLLLDVNPKDFDVATSATPEQVHHLFR 92
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
RS IIGRRF I V + IEV++F + + +++ YG E D R
Sbjct: 93 RSRIIGRRFKIVHVMVGPETIEVTTFRGGSIDDTNETGRIMADNSYGSQEEDAHR----- 147
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+LF+DP I DY +G+ DL+ KL + + ED R+LR +R+AA+L
Sbjct: 148 -RDFTVNALFYDPSDESIVDYHHGVKDLQARKLVMIGQPARRYQEDPVRMLRAVRLAAKL 206
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
++ + + + +++ +R+ E+ +L G A S +C LR L + + P
Sbjct: 207 NFEIDENTRKPIRAHAHLLKKEPPARLFDEMLKLLMSGQAYSCLCKLREEGLSRGVFPLL 266
Query: 302 AAYLDQQA 309
A LD++
Sbjct: 267 DAVLDEEG 274
>gi|398840875|ref|ZP_10598106.1| poly(A) polymerase [Pseudomonas sp. GM102]
gi|398109706|gb|EJL99626.1| poly(A) polymerase [Pseudomonas sp. GM102]
Length = 556
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 129/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 135 IVERLQNAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 194
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 195 IHFGREIIEVATFR--ANHPQNDEDEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 246
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 247 RDFTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLN 306
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K T + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 307 FGIEKHSATPIRELAPLLREIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASA 366
Query: 303 AYLD 306
A L+
Sbjct: 367 AALE 370
>gi|339484891|ref|YP_004696677.1| poly(A) polymerase [Nitrosomonas sp. Is79A3]
gi|338807036|gb|AEJ03278.1| poly(A) polymerase [Nitrosomonas sp. Is79A3]
Length = 464
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 158/333 (47%), Gaps = 27/333 (8%)
Query: 35 MCREMCSDSFNQEVDVS------NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYL 88
M R+ F+++ S + + ++ GI R I + L+ GF AY+
Sbjct: 1 MIRKFLRKVFSRKAPASEPNAKLSLSIIPFKHHGIRRNQITPCALKTATALQQAGFSAYI 60
Query: 89 VGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFE 148
VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF + V +EVS+F
Sbjct: 61 VGGAVRDLLLGLTPKDFDVATNATPEQVYQLFRRSRIIGRRFRLVHVMCGAETVEVSTFR 120
Query: 149 TVAKH-GEGKETV--------LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKI 199
+ G +V LL +G E D VR RDFT+N+LF+DP +I
Sbjct: 121 GQSPDDGNDHASVQLTDQHGRLLHDNVFGSQEEDAVR------RDFTVNALFYDPAKEEI 174
Query: 200 YDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSS 259
DY NG D++ K+R + + F ED R+LR +R+A++L + + + L+
Sbjct: 175 LDYLNGYEDIKAKKMRIIGDPIIRFREDPVRMLRAVRLASKLDMQIETETAKPIGDLAPL 234
Query: 260 IERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMM 319
++ + SR+ E+ +L G A + + LR L LLP L+Q G+
Sbjct: 235 LQNVPPSRLFDEMLKLLLSGHALACVVELRARGLHHGLLPMLDVILEQPLGE------RF 288
Query: 320 LMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
+ N D+ + D+P +L +H+ L
Sbjct: 289 ITIALKNTDERIRQDKPVSPGFLFAILLWHEVL 321
>gi|398896300|ref|ZP_10647429.1| poly(A) polymerase [Pseudomonas sp. GM55]
gi|398178560|gb|EJM66205.1| poly(A) polymerase [Pseudomonas sp. GM55]
Length = 466
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 126/242 (52%), Gaps = 16/242 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETV----------LLSQIPYGCDEIDLVRWRNSIHRD 184
+H +IEV++F E +E +L YG E D R RD
Sbjct: 105 IHFGREIIEVATFRANHPQNEDEEDSNQSSRNESGRILRDNVYGTLEEDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFG 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 219 IEKHSALPIRDLAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEA 278
Query: 305 LD 306
L+
Sbjct: 279 LE 280
>gi|237809043|ref|YP_002893483.1| poly(A) polymerase [Tolumonas auensis DSM 9187]
gi|237501304|gb|ACQ93897.1| poly(A) polymerase [Tolumonas auensis DSM 9187]
Length = 521
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 155/298 (52%), Gaps = 29/298 (9%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+MI + + VL L G+Q YLVGG VRDLLL ++PKDFDV+T A+ +QIR+ F+
Sbjct: 79 ISRSMISENALKVLYRLHKAGYQGYLVGGGVRDLLLGKIPKDFDVVTDAHPEQIRKLFNN 138
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDEI 172
+IGRRF + + +IEV++F + +A+ E E +LL YG E
Sbjct: 139 CRLIGRRFRLAHIVFGRDIIEVATFRGHHHQVNTSKNIAEQSE--EGMLLRDNVYGTIEE 196
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFT+N+L+++ ++D+ G++DL KL + + ED R+L
Sbjct: 197 DAER------RDFTVNALYYNIKDFSLHDFHGGLNDLAAGKLELIGDPETRYREDPVRML 250
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R AA+LGL+ + L+ ++ + +R+ E + G A S+ LLR++
Sbjct: 251 RAVRFAAKLGLTISDRSAEPISRLAPLLQDIPSARLFEETIKLFLAGHALSTYQLLRKFG 310
Query: 293 LLKILLPFHAAYLDQQAGKITAEN----PMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
L + L P Q A +T +N L + N DK V+ ++P T + L
Sbjct: 311 LFQQLFP-------QAAKLLTPDNNSAYERFLEKALANSDKRVATEQPVTPTFFYATL 361
>gi|419839723|ref|ZP_14363128.1| poly(A) polymerase [Haemophilus haemolyticus HK386]
gi|386909146|gb|EIJ73823.1| poly(A) polymerase [Haemophilus haemolyticus HK386]
Length = 480
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 18/247 (7%)
Query: 72 SWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRF 130
+ V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF
Sbjct: 64 ALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRF 123
Query: 131 PICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSI 181
+ + +IEV++F A H + + E +LL YG E D R
Sbjct: 124 RLAHIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAER----- 176
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+L+++P N + DY +GI DL+ KLR + + ED R+LR +R A+L
Sbjct: 177 -RDFTVNALYYNPQDNTLRDYFDGIQDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 235
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
+ K + + L+ ++ + +R+ E +L G + LLR+Y L + L P
Sbjct: 236 DMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 295
Query: 302 AAYLDQQ 308
+AY ++
Sbjct: 296 SAYFTEK 302
>gi|416084684|ref|ZP_11587068.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
gi|348010342|gb|EGY50396.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
Length = 425
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 149/280 (53%), Gaps = 21/280 (7%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EI 125
MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F R +
Sbjct: 1 MINRHALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAVFQRQCRL 60
Query: 126 IGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDEIDLVR 176
+GRRF + V +IEV++F E +AK E E +LL YG E D R
Sbjct: 61 VGRRFRLAHVMFGREIIEVATFRAGHMEHHNEKLAKQSE--EGMLLRDNVYGTLEQDAER 118
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDF++N+L+++P N + DY NGI DL+ KLR + + ED R+LR +R
Sbjct: 119 ------RDFSVNALYYNPQDNTLKDYFNGIEDLKNGKLRLIGDPVTRYQEDPVRMLRSIR 172
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A+L + K + + LS ++ + +R+ E +L G + LLR+Y L +
Sbjct: 173 FMAKLEMFLDKPSEAPIKELSHLLKNIPSARLFEESLKLLQGGNGVKTYRLLRQYGLFEQ 232
Query: 297 LLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L P Y ++ + + M++R + D+ V+ P
Sbjct: 233 LFPLLQNYFTEREDSMAEK---MILRALTSTDERVADKLP 269
>gi|372273042|ref|ZP_09509090.1| tRNA nucleotidyltransferase/poly(A) polymerase [Marinobacterium
stanieri S30]
Length = 492
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 146/287 (50%), Gaps = 17/287 (5%)
Query: 33 PQMCREMCSDSFNQEVDV---SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLV 89
P + +DS QE +V + + I R + + V+ L+ G++ YLV
Sbjct: 32 PAAAEQPAADSAIQEDEVLPLGTRRVIPESEHQIPRRRLDDNAMKVVYRLEDAGYEGYLV 91
Query: 90 GGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFET 149
GGC+RDLL+++ PKDFD+ T+A+ +Q F R +IGRRF + V +IEV++F
Sbjct: 92 GGCIRDLLMQKQPKDFDIATSAHPEQAVELFRRGRLIGRRFKLLHVRFGREIIEVATFRA 151
Query: 150 VAKHGE-GKET-------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYD 201
H + GK+ +++ YG E D +R RDFT+N+L++D + + D
Sbjct: 152 SHNHDKAGKDNARTADTGMIVRDNVYGTIEEDALR------RDFTVNALYYDAKDHSLID 205
Query: 202 YANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIE 261
+ANG D++ LR + A + ED R++R R AA+LG D +H L+ +
Sbjct: 206 FANGYRDIQDRCLRMIGDASERYREDPVRMIRAARFAAKLGFEIEPDTARPIHELAPLMR 265
Query: 262 RLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQ 308
+ +R+ E+ +L G E+S LRR+ L + L P LD +
Sbjct: 266 NVAPARLFDEVLKLLQSGHGEASFRQLRRFGLFQYLFPLTDEALDDE 312
>gi|358447891|ref|ZP_09158401.1| poly(A) polymerase [Marinobacter manganoxydans MnI7-9]
gi|357227892|gb|EHJ06347.1| poly(A) polymerase [Marinobacter manganoxydans MnI7-9]
Length = 454
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 16/247 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R++I +P+ VL L G++AYLVGG VRD+LL PKDFD+ T A +++ F
Sbjct: 36 VSRSVISEPAKKVLHRLNKSGYEAYLVGGGVRDILLGGKPKDFDIATNATPEEVHDLFRN 95
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG----------EGKETVLLSQIPYGCDEI 172
S +IGRRF I V VIEV++F A + +LL YG E
Sbjct: 96 SRLIGRRFRIVHVVFGREVIEVTTFRGNAAEADTDTDDDDRRTSEHGLLLRDNVYGNQEE 155
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +R RDFT+N+L++ + D+ANGI DLR +LR + + ED R+L
Sbjct: 156 DALR------RDFTVNALYYCIRDFTVIDFANGIEDLRNRQLRLIGDPETRYREDPVRML 209
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R AA+LG + + + L+ + + +R+ E+ + S G E++ LL RYN
Sbjct: 210 RAIRFAAKLGFDIEPETEAPIGELAPLLTHIPPARLFDEVLKLFSAGHGEATYDLLTRYN 269
Query: 293 LLKILLP 299
LL+ L P
Sbjct: 270 LLEPLFP 276
>gi|190149447|ref|YP_001967972.1| poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|189914578|gb|ACE60830.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
Length = 521
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 138/253 (54%), Gaps = 14/253 (5%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
TV++ + IT P+ + +++ L+ GF+AY+VGGC+RDLLL PKDFDV T A +
Sbjct: 81 TVNAGHYDITPKDFPKNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPE 140
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFET-VAKHGEGK------ETVLLSQIP 166
+I++ F R +IGRRF + + + EV++F A H K E +LL
Sbjct: 141 EIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNV 200
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG D R RDF++NSL++DP N I+D+ +GI+DL+ KLR + + + E
Sbjct: 201 YGTLREDAQR------RDFSVNSLYYDPKHNLIFDFFDGIADLKAGKLRLIGDPVVRYQE 254
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K DT + L+ ++ + +R+ E + G +
Sbjct: 255 DPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQ 314
Query: 287 LLRRYNLLKILLP 299
L+R+Y L + L P
Sbjct: 315 LMRQYGLFEQLFP 327
>gi|417846310|ref|ZP_12492318.1| Putative polyA polymerase [Haemophilus haemolyticus M21639]
gi|341952712|gb|EGT79233.1| Putative polyA polymerase [Haemophilus haemolyticus M21639]
Length = 480
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 18/247 (7%)
Query: 72 SWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRF 130
+ V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF
Sbjct: 64 ALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRF 123
Query: 131 PICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSI 181
+ + +IEV++F A H + + E +LL YG E D R
Sbjct: 124 RLAHIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAER----- 176
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+L+++P N + DY +GI DL+ KLR + + ED R+LR +R A+L
Sbjct: 177 -RDFTVNALYYNPQDNTLRDYFDGIHDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 235
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
+ K + + L+ ++ + +R+ E +L G + LLR+Y L + L P
Sbjct: 236 DMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 295
Query: 302 AAYLDQQ 308
+AY ++
Sbjct: 296 SAYFTEK 302
>gi|388548316|ref|ZP_10151565.1| poly(A) polymerase [Pseudomonas sp. M47T1]
gi|388273569|gb|EIK93182.1| poly(A) polymerase [Pseudomonas sp. M47T1]
Length = 463
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 127/246 (51%), Gaps = 20/246 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + +IGRRF +
Sbjct: 45 IVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQVRAEFRNARVIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 105 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 156
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 RDFTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPVQRYQEDPVRMLRAVRFAAKLN 216
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + L+ + + +R+ E + G A + +L L L P A
Sbjct: 217 FGIEKHTAAPIRELAPMLREIPSARLFEECLKLFLSGNAADTFEMLVDLQLFDPLFPASA 276
Query: 303 AYLDQQ 308
L+ Q
Sbjct: 277 HSLEHQ 282
>gi|388259523|ref|ZP_10136696.1| polynucleotide adenylyltransferase [Cellvibrio sp. BR]
gi|387936961|gb|EIK43519.1| polynucleotide adenylyltransferase [Cellvibrio sp. BR]
Length = 459
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 132/242 (54%), Gaps = 11/242 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + ++K L+ GF AYLVGG VRDLLL PKDFDV T A +++R F
Sbjct: 38 ISRKNISSAAIKIIKQLEDAGFAAYLVGGGVRDLLLGGHPKDFDVATNATPDEVKRIFRS 97
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHGEGKE-TVLLSQIPYGCDEIDLVRW 177
+ I+GRRF I V + VIEV++F + ++H E +LL YG E D +R
Sbjct: 98 ARIVGRRFQIVHVRMGREVIEVTTFRGHHDDSSQHAARSEDGMLLRDNVYGTLETDAMR- 156
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFT+N+L++ + DY +G+SDL+ LR + + ED RILR LR
Sbjct: 157 -----RDFTVNALYYTLKDFSVIDYCDGMSDLKTRTLRMIGDPATRYKEDPVRILRALRF 211
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
AA+LG + + + L + + +R+ E+ + G+A ++ L+R Y+LL L
Sbjct: 212 AAKLGFTLEPNTAKPIRELGGLLLNVSDARLFEEVLKLFLNGSATATFALMRDYDLLVHL 271
Query: 298 LP 299
LP
Sbjct: 272 LP 273
>gi|386265567|ref|YP_005829059.1| Poly(A) polymerase I [Haemophilus influenzae R2846]
gi|309972803|gb|ADO96004.1| Poly(A) polymerase I [Haemophilus influenzae R2846]
Length = 452
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 134/244 (54%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 39 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 98
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D VR RD
Sbjct: 99 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR------RD 150
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 151 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 210
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y L + L P ++Y
Sbjct: 211 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSSY 270
Query: 305 LDQQ 308
++
Sbjct: 271 FTEK 274
>gi|15602729|ref|NP_245801.1| hypothetical protein PM0864 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721175|gb|AAK02948.1| PcnB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 501
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 165/314 (52%), Gaps = 24/314 (7%)
Query: 32 EPQMCREMCSDSFNQEVDVS---NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYL 88
EP E+ + S +++ +S N + GIT MI + + +++ L GF+AY+
Sbjct: 40 EPITTSEIRNVSNSKQAKLSHHYNKSIFKASQYGITPRMINRNALGIVEKLHRHGFEAYI 99
Query: 89 VGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSF 147
VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF + + VIEV++F
Sbjct: 100 VGGCLRDLLLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATF 159
Query: 148 ---------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNK 198
E++AK + KE +LL YG E D R RDFT+N+L+++P N
Sbjct: 160 RASHNENNHESLAK--QSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNT 211
Query: 199 IYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSS 258
+ DY +GI DL+ KLR + + ED R+LR +R A+L + K + + L+
Sbjct: 212 LRDYFHGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAP 271
Query: 259 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPM 318
++ + +R+ E +L G + LLR+Y L + L P Y ++ G AE
Sbjct: 272 LLKNIPPARLFDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEK-GDSLAER-- 328
Query: 319 MLMRLFFNLDKLVS 332
M+++ + D+ V+
Sbjct: 329 MILKALTSTDERVA 342
>gi|417839781|ref|ZP_12485950.1| Putative polyA polymerase [Haemophilus haemolyticus M19107]
gi|341951753|gb|EGT78308.1| Putative polyA polymerase [Haemophilus haemolyticus M19107]
Length = 480
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 18/247 (7%)
Query: 72 SWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRF 130
+ V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF
Sbjct: 64 ALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRF 123
Query: 131 PICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSI 181
+ + +IEV++F A H + + E +LL YG E D R
Sbjct: 124 RLAHIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAER----- 176
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+L+++P N + DY +GI DL+ KLR + + ED R+LR +R A+L
Sbjct: 177 -RDFTVNALYYNPQDNTLRDYFDGIHDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 235
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
+ K + + L+ ++ + +R+ E +L G + LLR+Y L + L P
Sbjct: 236 DMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGIKTYRLLRQYGLFEQLFPAL 295
Query: 302 AAYLDQQ 308
+AY ++
Sbjct: 296 SAYFTEK 302
>gi|229846983|ref|ZP_04467089.1| probable poly polymerase [Haemophilus influenzae 7P49H1]
gi|229810067|gb|EEP45787.1| probable poly polymerase [Haemophilus influenzae 7P49H1]
Length = 452
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 135/244 (55%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 39 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 98
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D VR RD
Sbjct: 99 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR------RD 150
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 151 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 210
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y+L + L P ++Y
Sbjct: 211 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYSLFEQLFPALSSY 270
Query: 305 LDQQ 308
++
Sbjct: 271 FTEK 274
>gi|444921526|ref|ZP_21241361.1| Poly(A) polymerase [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507253|gb|ELV07430.1| Poly(A) polymerase [Wohlfahrtiimonas chitiniclastica SH04]
Length = 408
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 135/255 (52%), Gaps = 13/255 (5%)
Query: 52 NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTA 111
N K ++ G+TR I + + V++ L G++AY+VGG VRD+LL++ PKDFD+ T A
Sbjct: 2 NKKIYTAQEHGLTRRFISKQALSVVQTLVDAGYEAYIVGGAVRDILLKKSPKDFDIATNA 61
Query: 112 NLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-------GKETVLLSQ 164
+ +QI+R F ++GRRF + + +IEV++F + E G + L+
Sbjct: 62 HPEQIKRLFRNCRLVGRRFRLAHILFGRDIIEVATFRANSDDDEEHKDRKVGDDGFLIRD 121
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
YG E D VR RDFTIN+L++DP N++ D+ NG DL +L + F
Sbjct: 122 NVYGTIEDDAVR------RDFTINALYYDPIRNEVIDFTNGYEDLLQGQLNLIGDPAKRF 175
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R +LG + + + A++ + ++ + +R+ E+ ++ G
Sbjct: 176 REDPVRMLRAVRFEVKLGFTMPETLINAINDMGYLLQTVSAARMFDEVVKLMLNGYGHQV 235
Query: 285 ICLLRRYNLLKILLP 299
LR Y+L + P
Sbjct: 236 YLRLRHYHLFSQIFP 250
>gi|145636731|ref|ZP_01792397.1| polyA polymerase [Haemophilus influenzae PittHH]
gi|145270029|gb|EDK09966.1| polyA polymerase [Haemophilus influenzae PittHH]
Length = 452
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 134/244 (54%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 39 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 98
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D VR RD
Sbjct: 99 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR------RD 150
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 151 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 210
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y L + L P ++Y
Sbjct: 211 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSSY 270
Query: 305 LDQQ 308
++
Sbjct: 271 FTEK 274
>gi|26991381|ref|NP_746806.1| poly(A) polymerase [Pseudomonas putida KT2440]
gi|24986448|gb|AAN70270.1|AE016667_3 poly(A) polymerase [Pseudomonas putida KT2440]
Length = 460
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 19/245 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRDL+L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H E + +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--AHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L++DP +I DYANG+ D+R LR + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E + G + +L L + L P A
Sbjct: 217 GIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASAH 276
Query: 304 YLDQQ 308
LD++
Sbjct: 277 ALDER 281
>gi|330999362|ref|ZP_08323079.1| poly(A) polymerase [Parasutterella excrementihominis YIT 11859]
gi|329575220|gb|EGG56771.1| poly(A) polymerase [Parasutterella excrementihominis YIT 11859]
Length = 479
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 133/228 (58%), Gaps = 9/228 (3%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V + L+ G++A++VGG VRDLL+ PKDFDV T A +++++ R+ IIGRRF +
Sbjct: 42 VCQKLQDAGYKAFIVGGAVRDLLIGAKPKDFDVATDATPEEVKKVTRRAIIIGRRFRLVH 101
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE--TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
V+ IEV++F AK G K+ V+ + +G ++ ++ RDFT+N+++F
Sbjct: 102 VNKGAETIEVATFRGFAKQGVTKDEDGVITNDNVFG------EQYEDAARRDFTVNAMYF 155
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
DP +YDY +G+ D+R K+R + + ED RILR +RIAA+LG + +
Sbjct: 156 DPISGDLYDYHHGLDDIRERKIRMIGDPATRYREDPVRILRAIRIAAKLGFTIDEKTAAP 215
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
MH + + + + +R+ E + M+ G+A + + L+ RY+ + I +P
Sbjct: 216 MHYMQTLLLSVPSARLADEFSKMVLSGSAVACMELMNRYD-INIPIPL 262
>gi|145633375|ref|ZP_01789105.1| polyA polymerase [Haemophilus influenzae 3655]
gi|145635248|ref|ZP_01790952.1| polyA polymerase [Haemophilus influenzae PittAA]
gi|229845401|ref|ZP_04465532.1| probable poly polymerase [Haemophilus influenzae 6P18H1]
gi|144985938|gb|EDJ92540.1| polyA polymerase [Haemophilus influenzae 3655]
gi|145267527|gb|EDK07527.1| polyA polymerase [Haemophilus influenzae PittAA]
gi|229811709|gb|EEP47407.1| probable poly polymerase [Haemophilus influenzae 6P18H1]
Length = 452
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 134/244 (54%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 39 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 98
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D VR RD
Sbjct: 99 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR------RD 150
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 151 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 210
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y L + L P ++Y
Sbjct: 211 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSSY 270
Query: 305 LDQQ 308
++
Sbjct: 271 FTEK 274
>gi|68248614|ref|YP_247726.1| poly polymerase [Haemophilus influenzae 86-028NP]
gi|68056813|gb|AAX87066.1| probable poly polymerase [Haemophilus influenzae 86-028NP]
Length = 452
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 134/244 (54%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 39 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 98
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D R RD
Sbjct: 99 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR------RD 150
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 151 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 210
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y+L + L P +AY
Sbjct: 211 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYSLFEQLFPALSAY 270
Query: 305 LDQQ 308
++
Sbjct: 271 FTEK 274
>gi|332535564|ref|ZP_08411337.1| poly(A) polymerase [Pseudoalteromonas haloplanktis ANT/505]
gi|332035021|gb|EGI71540.1| poly(A) polymerase [Pseudoalteromonas haloplanktis ANT/505]
Length = 493
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 165/322 (51%), Gaps = 35/322 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R + VL LK G+ AYLVGGC+RD+LL + PKDFDV+T A Q+++ F
Sbjct: 71 GISRKQFSPNAIKVLYRLKDGGYDAYLVGGCIRDILLGQQPKDFDVVTNATPDQVKKLFR 130
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVR----- 176
+IGRRF + + +IEV+ T+ H E +E +QI +E L+R
Sbjct: 131 NCRLIGRRFRLAHIVFGREIIEVA---TMRGHHEAQEDK--NQISQSSNEGQLLRDNVFG 185
Query: 177 --WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDF+IN+L++ I+DYANG++ ++ ++ + + ED R+LR
Sbjct: 186 SIEEDAERRDFSINALYYSIKDFSIHDYANGLAAIKAKQIELIGDPETRYREDPVRMLRA 245
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L +S + + L+S ++ + +R+ E+ + G AE++ +LR+Y L
Sbjct: 246 VRFATKLDMSIAPKSEKPISELASLLDNIPPARLFEEILKLFLNGKAEANFLMLRKYGLF 305
Query: 295 KILLPFHAAYLDQQAGKITAENP-----MMLMRLFFNLDKLVSCDR---PA---DYTLWV 343
+ L P + KI +NP ++ ++F N DK ++ D+ PA LW
Sbjct: 306 RSLFP--------ELDKILDKNPSGLEHTLIQQMFQNTDKRINADKKVTPAFIFAALLWF 357
Query: 344 GLLSFHQALVSDPQ----DAFV 361
LL + + S Q DAF
Sbjct: 358 PLLERTKKIQSQEQLSEYDAFA 379
>gi|148827216|ref|YP_001291969.1| polyA polymerase [Haemophilus influenzae PittGG]
gi|148718458|gb|ABQ99585.1| polyA polymerase [Haemophilus influenzae PittGG]
Length = 452
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 133/244 (54%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 39 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 98
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D R RD
Sbjct: 99 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR------RD 150
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 151 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 210
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y L + L P +AY
Sbjct: 211 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPTLSAY 270
Query: 305 LDQQ 308
++
Sbjct: 271 FTEK 274
>gi|148549764|ref|YP_001269866.1| poly(A) polymerase [Pseudomonas putida F1]
gi|397693392|ref|YP_006531272.1| poly(A) polymerase [Pseudomonas putida DOT-T1E]
gi|421523938|ref|ZP_15970565.1| poly(A) polymerase [Pseudomonas putida LS46]
gi|148513822|gb|ABQ80682.1| poly(A) polymerase [Pseudomonas putida F1]
gi|397330122|gb|AFO46481.1| poly(A) polymerase [Pseudomonas putida DOT-T1E]
gi|402752183|gb|EJX12690.1| poly(A) polymerase [Pseudomonas putida LS46]
Length = 460
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 19/245 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRDL+L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H E + +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--AHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L++DP +I DYANG+ D+R LR + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E + G + +L L + L P A
Sbjct: 217 GIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASAH 276
Query: 304 YLDQQ 308
LD++
Sbjct: 277 ALDER 281
>gi|386013899|ref|YP_005932176.1| PcnB [Pseudomonas putida BIRD-1]
gi|313500605|gb|ADR61971.1| PcnB [Pseudomonas putida BIRD-1]
Length = 460
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 19/245 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRDL+L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H E + +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--AHHSEDDQGDTHRSSHNASGRILRDNVYGTLEEDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L++DP +I DYANG+ D+R LR + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTQRYQEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E + G + +L L + L P A
Sbjct: 217 GIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASAH 276
Query: 304 YLDQQ 308
LD++
Sbjct: 277 ALDER 281
>gi|417843738|ref|ZP_12489806.1| Putative polyA polymerase [Haemophilus haemolyticus M21127]
gi|341948651|gb|EGT75271.1| Putative polyA polymerase [Haemophilus haemolyticus M21127]
Length = 480
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 18/247 (7%)
Query: 72 SWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRF 130
+ V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF
Sbjct: 64 ALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRF 123
Query: 131 PICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSI 181
+ + +IEV++F A H + + E +LL YG E D R
Sbjct: 124 RLAHIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAER----- 176
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+L+++P N + DY +GI DL+ KLR + + ED R+LR +R A+L
Sbjct: 177 -RDFTVNALYYNPQDNTLRDYFDGIHDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 235
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
+ K + + L+ ++ + +R+ E +L G + LLR+Y L + L P
Sbjct: 236 DMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 295
Query: 302 AAYLDQQ 308
+AY ++
Sbjct: 296 SAYFTEK 302
>gi|167035687|ref|YP_001670918.1| poly(A) polymerase [Pseudomonas putida GB-1]
gi|166862175|gb|ABZ00583.1| poly(A) polymerase [Pseudomonas putida GB-1]
Length = 462
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 19/245 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRDL+L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H E + +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--AHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L++DP +I DYANG+ D+R LR + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E + G + +L L + L P A
Sbjct: 217 GIEKHTFQPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASAH 276
Query: 304 YLDQQ 308
LD++
Sbjct: 277 ALDER 281
>gi|395647285|ref|ZP_10435135.1| poly(A) polymerase [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 633
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 136/266 (51%), Gaps = 16/266 (6%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + RA + + +++ L++ G+QAYLVGGCVRD+LL PKDFDV T+
Sbjct: 21 STPEVLNSSQHSLQRAQFSRYAVNIVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATS 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + IIGRRF + +H +IEV++F + +E
Sbjct: 81 ATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDEEEDTNQSSRNESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFT+N+L++DP +I DYANG+ D+R +R +
Sbjct: 141 ILRDNVYGTLEEDAQR------RDFTVNALYYDPVSERILDYANGVHDIRNNLIRLIGDP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L + + L+ + + +R+ E+ + G
Sbjct: 195 TQRYQEDPVRMLRAVRFAAKLNFGIERHTAAPIRELAPMLREIPSARLFEEVLKLFLSGY 254
Query: 281 AESSICLLRRYNLLKILLPFHAAYLD 306
A + +L L L P A L+
Sbjct: 255 AADTFEMLVDLQLFDPLFPASAEALE 280
>gi|303256720|ref|ZP_07342734.1| poly(A) polymerase [Burkholderiales bacterium 1_1_47]
gi|302860211|gb|EFL83288.1| poly(A) polymerase [Burkholderiales bacterium 1_1_47]
Length = 468
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 133/228 (58%), Gaps = 9/228 (3%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V + L+ G++A++VGG VRDLL+ PKDFDV T A +++++ R+ IIGRRF +
Sbjct: 31 VCQKLQDAGYKAFIVGGAVRDLLIGAKPKDFDVATDATPEEVKKVTRRAIIIGRRFRLVH 90
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE--TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
V+ IEV++F AK G K+ V+ + +G ++ ++ RDFT+N+++F
Sbjct: 91 VNKGAETIEVATFRGFAKQGVTKDEDGVITNDNVFG------EQYEDAARRDFTVNAMYF 144
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
DP +YDY +G+ D+R K+R + + ED RILR +RIAA+LG + +
Sbjct: 145 DPISGDLYDYHHGLDDIRERKIRMIGDPATRYREDPVRILRAIRIAAKLGFTIDEKTAAP 204
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
MH + + + + +R+ E + M+ G+A + + L+ RY+ + I +P
Sbjct: 205 MHYMQTLLLSVPSARLADEFSKMVLSGSAVACMELMNRYD-INIPIPL 251
>gi|330811775|ref|YP_004356237.1| polynucleotide adenylyltransferase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|423699343|ref|ZP_17673833.1| poly(A) polymerase [Pseudomonas fluorescens Q8r1-96]
gi|28932734|gb|AAO60158.1| polynucleotide adenylyltransferase [Pseudomonas fluorescens
Q8r1-96]
gi|327379883|gb|AEA71233.1| Putative polynucleotide adenylyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|387996991|gb|EIK58321.1| poly(A) polymerase [Pseudomonas fluorescens Q8r1-96]
Length = 465
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 127/245 (51%), Gaps = 20/245 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD+LL PKDFDV T+A +QIR +F + IIGRRF +
Sbjct: 45 IVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQIRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 105 IHFGREIIEVATFR--ANHPQNDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 156
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 RDFTINALYYDPVSERILDYANGVHDIRNRLIRLIGDPKQRYQEDPVRMLRAVRFAAKLD 216
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 217 FGIEKHSAVPIRELAPMLREIPSARLFEEVLKLFLSGNAADTFEMLVDLQLFDPLFPASA 276
Query: 303 AYLDQ 307
L+
Sbjct: 277 EALEH 281
>gi|3650360|emb|CAA77045.1| polynucleotide adenylyltransferase [Pseudomonas putida]
Length = 463
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 19/245 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRDL+L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 48 IVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H E + +L YG E D R R
Sbjct: 108 VHFGREIIEVATFR--AHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQR------R 159
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L++DP +I DYANG+ D+R LR + + ED R+LR +R AA+L
Sbjct: 160 DFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDF 219
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E + G + +L L + L P A
Sbjct: 220 GIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASAH 279
Query: 304 YLDQQ 308
LD++
Sbjct: 280 ALDER 284
>gi|257094033|ref|YP_003167674.1| poly(A) polymerase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257046557|gb|ACV35745.1| poly(A) polymerase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 448
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 150/294 (51%), Gaps = 10/294 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
G+ R I + ++ L+ G+QAY+VGG VRDLL VPKDFDV T A +Q+R+ F
Sbjct: 30 GLQREQISRGCRRTIETLQEGGYQAYVVGGAVRDLLAGLVPKDFDVATNATPEQVRQCFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--GKETVLLSQIPYGCDEIDLVRWRN 179
RS IIGRRF I V++ IEV++F HGE G + Q D + + +
Sbjct: 90 RSRIIGRRFQIVHVNMGVETIEVTTFR--GHHGEQGGNKAQTDDQGRVLRDNVFGSQAED 147
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
+ RDFT+N+L++DP I DY +G++DL+ LR + + ED R+LR +R+AA
Sbjct: 148 AARRDFTVNALYYDPTAETIIDYHHGVADLKQKTLRMIGDPKTRYREDPVRMLRAVRLAA 207
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+LGL + + ++ IE + SR+ E+ +L+ G A + LR L LLP
Sbjct: 208 KLGLMIDPEASRPIREMTDLIENVPPSRLFDEMLKLLTSGHAVRCVTRLREEGLHHGLLP 267
Query: 300 FHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALV 353
LDQ G+ +M + D V +P L +++ LV
Sbjct: 268 LLDVILDQPLGE------RFVMLALESTDARVGAGKPISPGFLFATLLWNEVLV 315
>gi|16272037|ref|NP_438236.1| polyA polymerase [Haemophilus influenzae Rd KW20]
gi|1172043|sp|P44439.1|PCNB_HAEIN RecName: Full=Probable poly(A) polymerase; Short=PAP
gi|1573011|gb|AAC21741.1| poly(A) polymerase (pcnB) [Haemophilus influenzae Rd KW20]
Length = 452
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 133/244 (54%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 39 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 98
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D R RD
Sbjct: 99 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR------RD 150
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 151 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 210
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y L + L P +AY
Sbjct: 211 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSAY 270
Query: 305 LDQQ 308
++
Sbjct: 271 FTEK 274
>gi|342904082|ref|ZP_08725884.1| Putative polyA polymerase [Haemophilus haemolyticus M21621]
gi|342904616|ref|ZP_08726415.1| Putative polyA polymerase [Haemophilus haemolyticus M21621]
gi|341953037|gb|EGT79551.1| Putative polyA polymerase [Haemophilus haemolyticus M21621]
gi|341954091|gb|EGT80585.1| Putative polyA polymerase [Haemophilus haemolyticus M21621]
Length = 480
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 135/247 (54%), Gaps = 18/247 (7%)
Query: 72 SWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRF 130
+ V++ L+ QGF+AY+VGGC+RD+LL + PKDFDV T A +QI+ F R ++GRRF
Sbjct: 64 ALTVVEKLQRQGFEAYIVGGCIRDILLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRF 123
Query: 131 PICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSI 181
+ + +IEV++F A H + + E +LL YG E D R
Sbjct: 124 RLAHIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAER----- 176
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+L+++P N + DY +GI DL+ KLR + + ED R+LR +R A+L
Sbjct: 177 -RDFTVNALYYNPQDNTLRDYFDGIHDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 235
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
+ K + + L+ ++ + +R+ E +L G + LLR+Y L + L P
Sbjct: 236 DMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 295
Query: 302 AAYLDQQ 308
+AY ++
Sbjct: 296 SAYFTEK 302
>gi|378952882|ref|YP_005210370.1| protein PcnB [Pseudomonas fluorescens F113]
gi|359762896|gb|AEV64975.1| PcnB [Pseudomonas fluorescens F113]
Length = 465
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 127/245 (51%), Gaps = 20/245 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD+LL PKDFDV T+A +QIR +F + IIGRRF +
Sbjct: 45 IVERLQNAGYQAYLVGGCVRDMLLNITPKDFDVATSATPEQIRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 105 IHFGREIIEVATFR--ANHPQNDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 156
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 RDFTINALYYDPVSERILDYANGVHDIRNRLIRLIGDPKQRYQEDPVRMLRAVRFAAKLD 216
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 217 FGIEKHSAMPIRELAPMLREIPSARLFEEVLKLFLSGNAADTFEMLVDLQLFDPLFPASA 276
Query: 303 AYLDQ 307
L+
Sbjct: 277 EALEH 281
>gi|395445449|ref|YP_006385702.1| poly polymerase [Pseudomonas putida ND6]
gi|388559446|gb|AFK68587.1| poly polymerase [Pseudomonas putida ND6]
Length = 436
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 19/245 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRDL+L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 21 IVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 80
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H E + +L YG E D R R
Sbjct: 81 VHFGREIIEVATFR--AHHSEDDQGDAHRSSHNASGRILRDNVYGTLEEDAQR------R 132
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L++DP +I DYANG+ D+R LR + + ED R+LR +R AA+L
Sbjct: 133 DFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDF 192
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E + G + +L L + L P A
Sbjct: 193 GIEKHTYLPIRGLAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASAH 252
Query: 304 YLDQQ 308
LD++
Sbjct: 253 ALDER 257
>gi|145639648|ref|ZP_01795251.1| polyA polymerase [Haemophilus influenzae PittII]
gi|145271205|gb|EDK11119.1| polyA polymerase [Haemophilus influenzae PittII]
gi|309750618|gb|ADO80602.1| Poly(A) polymerase I [Haemophilus influenzae R2866]
Length = 452
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 134/247 (54%), Gaps = 18/247 (7%)
Query: 72 SWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRF 130
+ V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF
Sbjct: 36 ALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRF 95
Query: 131 PICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSI 181
+ + +IEV++F A H + + E +LL YG E D VR
Sbjct: 96 RLAHIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR----- 148
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L
Sbjct: 149 -RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 207
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
+ K + + L+ ++ + +R+ E +L G + LLR+Y L + L P
Sbjct: 208 DMFLEKPSEQPISELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267
Query: 302 AAYLDQQ 308
+ Y ++
Sbjct: 268 SPYFTEK 274
>gi|399521899|ref|ZP_10762564.1| poly(A) polymerase [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399109934|emb|CCH39124.1| poly(A) polymerase [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 464
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 91/270 (33%), Positives = 136/270 (50%), Gaps = 16/270 (5%)
Query: 51 SNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
S + ++S + R I + + V++ L+ G+QAYLVGGCVRDLLL PKDFDV T
Sbjct: 21 STPEVLNSSQHPLKRNEISRHAISVVERLQKAGYQAYLVGGCVRDLLLDIDPKDFDVATN 80
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV---------- 160
A +Q+R +F + +IGRRF + VH +IEV++F G+ +E
Sbjct: 81 ATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPQGDEEENTNLASRNESGR 140
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L YG E D R RDFTIN+L++DP I DYA G+ D+R +R +
Sbjct: 141 ILRDNVYGTLEDDAQR------RDFTINALYYDPTQEHILDYARGMHDVRNHLVRLIGDP 194
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L K + L+ + + +R+ E+ + G
Sbjct: 195 EQRYLEDPVRMLRAVRFAAKLDFDIEKHSAAPIRRLAPMLRDIPSARLFDEVLKLFLAGY 254
Query: 281 AESSICLLRRYNLLKILLPFHAAYLDQQAG 310
AE + LL ++L L P L + G
Sbjct: 255 AEYTFDLLLEHDLFAQLFPASGEALKRNPG 284
>gi|77359558|ref|YP_339133.1| poly(A) polymerase I [Pseudoalteromonas haloplanktis TAC125]
gi|76874469|emb|CAI85690.1| poly(A) polymerase I [Pseudoalteromonas haloplanktis TAC125]
Length = 432
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 159/317 (50%), Gaps = 27/317 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R + VL LK GF AYLVGGC+RD+LL + PKDFDV+T A +Q+++ F
Sbjct: 8 GISRKQFSPNAIKVLYRLKDGGFDAYLVGGCIRDVLLGQQPKDFDVVTNATPEQVKKLFR 67
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEID 173
+IGRRF + + +IEV++ + E K + LL +G E D
Sbjct: 68 NCRLIGRRFRLAHIVFGREIIEVATMRGHHEAPEDKNQISQSSEQGQLLRDNVFGSIEED 127
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDF+IN+L++ IYDYANG++ ++ ++ + + ED R+LR
Sbjct: 128 AER------RDFSINALYYSINDFCIYDYANGLAAIKAKQIELIGDPETRYREDPVRMLR 181
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L + + + M +L+S ++ + +R+ E+ + G A+++ +LR+Y L
Sbjct: 182 AVRFATKLDMKIAPNSEKPMTALASLLDNIPPARLFEEILKLFLNGKAQANYLMLRKYGL 241
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR---PA---DYTLWVGLLS 347
L P LD G + A + +F N D ++ D+ PA LW LL
Sbjct: 242 FNSLFPELNRILDNNPGGLEA---TFIENMFKNTDDRINADKKVTPAYVFAALLWFPLLE 298
Query: 348 FHQALVSDPQ----DAF 360
+ + ++ Q DAF
Sbjct: 299 RTKTVQNEEQLSEYDAF 315
>gi|397688148|ref|YP_006525467.1| poly(A) polymerase [Pseudomonas stutzeri DSM 10701]
gi|395809704|gb|AFN79109.1| poly(A) polymerase [Pseudomonas stutzeri DSM 10701]
Length = 466
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 140/264 (53%), Gaps = 20/264 (7%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+ SR + R I + + V++ L+ G++AY+VGGCVRDLLL PKD+DV T+A +Q
Sbjct: 26 LSSRQHALRRNEISRHAVSVVERLQQAGYEAYVVGGCVRDLLLELTPKDYDVATSATPEQ 85
Query: 116 IRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE------------GKETVLLS 163
+R +F + +IGRRF + VH +IEV++F A H E + +L
Sbjct: 86 VRAEFRNARVIGRRFKLVHVHFGREIIEVATFR--ANHPEEDDDDASHLASRNESGRILR 143
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D R RDFTIN+L++DP +I+D+ +G+ D+R ++R +
Sbjct: 144 DNVYGTLEDDAQR------RDFTINALYYDPSSERIHDHTHGMQDIRNRQIRLIGNPEQR 197
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R AA+L + + L+ ++ + +R+ E+ + G AE
Sbjct: 198 YQEDPVRMLRAVRFAAKLDFDIERHSAEPIPELADLLDGIPSARLFDEILKLFLGGKAER 257
Query: 284 SICLLRRYNLLKILLPFHAAYLDQ 307
+ LL Y+L L P A L++
Sbjct: 258 TFELLLEYDLFAPLFPASAEALEE 281
>gi|387128121|ref|YP_006296726.1| Poly(A) polymerase [Methylophaga sp. JAM1]
gi|386275183|gb|AFI85081.1| Poly(A) polymerase [Methylophaga sp. JAM1]
Length = 457
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 147/277 (53%), Gaps = 12/277 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R +I + VL LK GF+AYLVGGCVRDLLL PKDFD+ T A +Q+ R F R
Sbjct: 39 ISRQLISPSALKVLYTLKDAGFEAYLVGGCVRDLLLGYEPKDFDISTNALPEQVHRLFRR 98
Query: 123 SEIIGRRFPICRVHI-KGSVIEVSSFETV--AKHGEGKETVLLSQIPYGCDEIDLVRWRN 179
S++IGRRF + V + +IEV++F AK+ K+ ++ YG E D WR
Sbjct: 99 SQLIGRRFKLVHVRFGRDEIIEVATFRAPPEAKNHVDKQGRIMQDNVYGTLEQDA--WR- 155
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFTIN+L+++ I DY GI+DL+ +R + + + ED R+LR LR A
Sbjct: 156 ---RDFTINALYYNIRDFSIVDYTGGIADLQAGLIRLIGDKPVRYREDPVRMLRALRFMA 212
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+LGL + + + L+ + + +R+ E + G A + LL Y + L P
Sbjct: 213 KLGLKLEAETEQLIVDLAPLLSDIPPARLFDETLKLYLSGQAAVTHELLCHYGVFDHLYP 272
Query: 300 FHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
AA L Q+ +LM+ N DK ++ ++P
Sbjct: 273 QTAALLHQENNGFPR---TLLMKALENTDKRLADNKP 306
>gi|398333562|ref|ZP_10518267.1| tRNA nucleotidyltransferase [Leptospira alexanderi serovar Manhao 3
str. L 60]
Length = 496
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 129/241 (53%), Gaps = 11/241 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A LGL+ K A+ + +E+ SR++ E N + + + LL++L
Sbjct: 208 AEILGLNIEKTTSKAIRKHKAELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGLLEVL 267
Query: 298 L 298
Sbjct: 268 F 268
>gi|148825656|ref|YP_001290409.1| poly polymerase [Haemophilus influenzae PittEE]
gi|148715816|gb|ABQ98026.1| probable poly polymerase [Haemophilus influenzae PittEE]
Length = 514
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 133/244 (54%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 101 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 160
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D VR RD
Sbjct: 161 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAVR------RD 212
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 213 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 272
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y L + L P + Y
Sbjct: 273 LEKPSEQPISELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSPY 332
Query: 305 LDQQ 308
++
Sbjct: 333 FTEK 336
>gi|152983716|ref|YP_001350768.1| poly(A) polymerase [Pseudomonas aeruginosa PA7]
gi|150958874|gb|ABR80899.1| poly(A) polymerase [Pseudomonas aeruginosa PA7]
Length = 467
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 128/242 (52%), Gaps = 19/242 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++IL+ G+QAY+VGGCVRD +L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 VVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H EG++ +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--AHHPEGQDDGDSRASSNESGRILRDNVYGSLEDDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L+FD ++ DYA+G+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYFDVTSERLLDYAHGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E+ + G AE + LL Y L L P A
Sbjct: 217 EIEKHSAAPIRRLAPLLREIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFPASAK 276
Query: 304 YL 305
L
Sbjct: 277 AL 278
>gi|398865270|ref|ZP_10620792.1| poly(A) polymerase [Pseudomonas sp. GM78]
gi|398243794|gb|EJN29373.1| poly(A) polymerase [Pseudomonas sp. GM78]
Length = 546
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 127/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 125 IVERLQGAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 184
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 185 IHFGREIIEVATFR--ANHPQSDEEEDHNKSLSNESGRILRDNVYGTLEEDAQR------ 236
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 237 RDFTINALYYDPVSERILDYANGVHDIRNQLIRLIGDPKQRYQEDPVRMLRAVRFAAKLN 296
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K T + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 297 FGIEKHSATPIRELAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASA 356
Query: 303 AYLD 306
L+
Sbjct: 357 EALE 360
>gi|418292364|ref|ZP_12904307.1| poly(A) polymerase [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379063790|gb|EHY76533.1| poly(A) polymerase [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 464
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 140/264 (53%), Gaps = 20/264 (7%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+ SR + R I + + V++ L+ G++AY+VGGCVRDLLL+ PKD+DV T+A +Q
Sbjct: 26 LSSRQHSLQRNEISRYAVSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQ 85
Query: 116 IRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE------------GKETVLLS 163
+R +F + +IGRRF + VH +IEV++F A H E + +L
Sbjct: 86 VRAEFRNARVIGRRFKLVHVHFGREIIEVATFR--ANHPEEDDDDAAHLASRNESGRILR 143
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D R RDFTIN+L++DP +I D+ G+ D+R +R +
Sbjct: 144 DNIYGSLEDDAQR------RDFTINALYYDPTTERILDHTRGVHDIRNRLIRLIGDPEQR 197
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R AA+LG + + L+ ++ + +R+ E+ + G AE
Sbjct: 198 YQEDPVRMLRAVRFAAKLGFEIERHSAEPIIDLADLLDGIPSARLFDEVLKLFLGGKAER 257
Query: 284 SICLLRRYNLLKILLPFHAAYLDQ 307
+ LL Y+L L P AA L++
Sbjct: 258 TFELLLEYDLFAPLFPASAAALER 281
>gi|325578734|ref|ZP_08148781.1| polyA polymerase family protein [Haemophilus parainfluenzae ATCC
33392]
gi|325159558|gb|EGC71690.1| polyA polymerase family protein [Haemophilus parainfluenzae ATCC
33392]
Length = 430
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 137/259 (52%), Gaps = 18/259 (6%)
Query: 60 NLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQ 119
+ GI M + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A QI+
Sbjct: 5 HFGINPRMFSRNAITVVEKLQRQGYEAYIVGGCLRDLLLGKHPKDFDVATNARPDQIQAV 64
Query: 120 FHRS-EIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGC 169
F R ++GRRF + + VIEV++F A H + + E +LL YG
Sbjct: 65 FQRQCRLVGRRFRLAHIMFGRDVIEVATFR--ASHSDARSENQAKQSDEGMLLRDNVYGT 122
Query: 170 DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCA 229
E D R RDFT+N+L+++P N + DY NGI DL+ KLR + + ED
Sbjct: 123 IEQDAER------RDFTVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPV 176
Query: 230 RILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
R+LR +R A+L + K + + L+ ++ + +R+ E +L G + LLR
Sbjct: 177 RMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQSGNGVKTYKLLR 236
Query: 290 RYNLLKILLPFHAAYLDQQ 308
+Y L + L P Y ++
Sbjct: 237 QYGLFEQLFPSLTPYFTEK 255
>gi|398346836|ref|ZP_10531539.1| tRNA nucleotidyltransferase [Leptospira broomii str. 5399]
Length = 489
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 124/219 (56%), Gaps = 11/219 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L G++AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLHKFGYKAYIVGGGVRDLLLERKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ +H GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPEHRFGKHVEEQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTIN+L++D + I DY G D+R +LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINALYYDIRNDSIVDYVGGFDDIRNRQLRVIGNPEISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
A LGL + ++ +S +E+ SR++ E N +
Sbjct: 208 AVLLGLKIDRGTSKSIKKNTSELEKASTSRMLEEYNKIF 246
>gi|359684020|ref|ZP_09254021.1| tRNA nucleotidyltransferase [Leptospira santarosai str. 2000030832]
gi|418744516|ref|ZP_13300872.1| poly(A) polymerase [Leptospira santarosai str. CBC379]
gi|418751681|ref|ZP_13307963.1| poly(A) polymerase [Leptospira santarosai str. MOR084]
gi|422002122|ref|ZP_16349360.1| tRNA nucleotidyltransferase [Leptospira santarosai serovar Shermani
str. LT 821]
gi|409967984|gb|EKO35799.1| poly(A) polymerase [Leptospira santarosai str. MOR084]
gi|410794967|gb|EKR92867.1| poly(A) polymerase [Leptospira santarosai str. CBC379]
gi|417259054|gb|EKT88433.1| tRNA nucleotidyltransferase [Leptospira santarosai serovar Shermani
str. LT 821]
gi|456876233|gb|EMF91356.1| poly(A) polymerase [Leptospira santarosai str. ST188]
Length = 491
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 129/241 (53%), Gaps = 11/241 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A LGL+ K A+ +E+ SR++ E N + A + + LL++L
Sbjct: 208 AEILGLNIEKTTSKAIRKHKMELEKASSSRMLEEYNKIFRTWKASLIFQGMAEHGLLEVL 267
Query: 298 L 298
Sbjct: 268 F 268
>gi|329123092|ref|ZP_08251662.1| polyA polymerase family protein [Haemophilus aegyptius ATCC 11116]
gi|327471647|gb|EGF17089.1| polyA polymerase family protein [Haemophilus aegyptius ATCC 11116]
Length = 480
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 133/244 (54%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 67 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 126
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D R RD
Sbjct: 127 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR------RD 178
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 179 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 238
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y L + L P ++Y
Sbjct: 239 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGRGVKTYRLLRQYGLFEQLFPALSSY 298
Query: 305 LDQQ 308
++
Sbjct: 299 FTEK 302
>gi|410448017|ref|ZP_11302105.1| poly(A) polymerase [Leptospira sp. Fiocruz LV3954]
gi|421111592|ref|ZP_15572066.1| poly(A) polymerase [Leptospira santarosai str. JET]
gi|410018222|gb|EKO80266.1| poly(A) polymerase [Leptospira sp. Fiocruz LV3954]
gi|410803001|gb|EKS09145.1| poly(A) polymerase [Leptospira santarosai str. JET]
Length = 491
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 129/241 (53%), Gaps = 11/241 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A LGL+ K A+ +E+ SR++ E N + A + + LL++L
Sbjct: 208 AEILGLNIEKTTSKAIRKHKMELEKASSSRMLEEYNKIFRTWKASLIFQGMAEHGLLEVL 267
Query: 298 L 298
Sbjct: 268 F 268
>gi|399907823|ref|ZP_10776375.1| poly(A) polymerase [Halomonas sp. KM-1]
Length = 425
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 131/244 (53%), Gaps = 13/244 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R +P+ VL L + GF+AYLVGGC+RD LL ++PKDFDV T A +Q+R F
Sbjct: 1 MSRQHFSEPALKVLYRLHNAGFEAYLVGGCIRDSLLGKMPKDFDVATDATPEQVRELFRN 60
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAK--HG-----EGKETVLLSQIPYGCDEIDLV 175
S IIGRRF I V VIEV++F HG + + +LL +G + D +
Sbjct: 61 SRIIGRRFRIVHVRFGREVIEVTTFRGTHSDDHGDHIAQQSEHGLLLRDNVWGSIQEDAI 120
Query: 176 RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGL 235
R RDFT+N+L++ I+D+A+G+ D+ LR + + + ED R+LR +
Sbjct: 121 R------RDFTVNALYYSIADFSIHDFADGMRDIESRTLRLIGDPAVRYREDPVRMLRAV 174
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R AA+L D + + L+ + ++ +R+ E+ + G ++ LLR Y L
Sbjct: 175 RFAAKLDFHIAADSEAPIEKLAPLLLQIPSARLFDEVLKLFMAGHGVATFRLLRHYGLFA 234
Query: 296 ILLP 299
+L P
Sbjct: 235 MLFP 238
>gi|386833983|ref|YP_006239298.1| poly(A) polymerase [Pasteurella multocida subsp. multocida str.
3480]
gi|385200684|gb|AFI45539.1| poly(A) polymerase [Pasteurella multocida subsp. multocida str.
3480]
Length = 452
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/281 (34%), Positives = 152/281 (54%), Gaps = 21/281 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GIT MI + + +++ L GF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F
Sbjct: 24 GITPRMINRNALGIVEKLHRHGFEAYIVGGCLRDLLLGKHPKDFDVATNALPEQIQTIFQ 83
Query: 122 RS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDE 171
R ++GRRF + + VIEV++F E++AK + KE +LL YG E
Sbjct: 84 RQCRLVGRRFRLAHIMFGRDVIEVATFRASHNENNHESLAK--QSKEGMLLRDNVYGTLE 141
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFT+N+L+++P N + DY +GI DL+ KLR + + ED R+
Sbjct: 142 QDAER------RDFTVNALYYNPQDNTLRDYFHGIEDLKAGKLRLIGDPVKRYQEDPVRM 195
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A+L + K + + L+ ++ + +R+ E +L G + LLR+Y
Sbjct: 196 LRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDECLKLLQAGYGVKTYKLLRQY 255
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVS 332
L + L P Y ++ G AE M+++ + D+ V+
Sbjct: 256 GLFEQLFPSLMPYFTEK-GDSLAER--MILKALTSTDERVA 293
>gi|398344819|ref|ZP_10529522.1| tRNA nucleotidyltransferase [Leptospira inadai serovar Lyme str.
10]
Length = 488
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 124/219 (56%), Gaps = 11/219 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L G++AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLHKFGYKAYIVGGGVRDLLLERKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ +H GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPEHRFGKHIEEQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTIN+L++D + I DY G D+R +LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINALYYDIRNDSIVDYVGGFDDIRNRQLRVIGNPEISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
A LGL + ++ +S +E+ SR++ E N +
Sbjct: 208 AVLLGLKIDRGTSKSIKKNTSELEKASTSRMLEEYNKIF 246
>gi|452877918|ref|ZP_21955164.1| poly(A) polymerase, partial [Pseudomonas aeruginosa VRFPA01]
gi|452185397|gb|EME12415.1| poly(A) polymerase, partial [Pseudomonas aeruginosa VRFPA01]
Length = 452
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 128/242 (52%), Gaps = 19/242 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++IL+ G+QAY+VGGCVRD +L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 VVEILQRAGYQAYVVGGCVRDQMLGIAPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H EG++ +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--AHHPEGQDDGDSRASSNESGRILRDNVYGSLEDDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L+FD ++ DYA+G+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYFDVTSERLLDYAHGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E+ + G AE + LL Y L L P A
Sbjct: 217 EIEKHSAAPIRRLAPLLREIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFPASAK 276
Query: 304 YL 305
L
Sbjct: 277 AL 278
>gi|421100248|ref|ZP_15560883.1| poly(A) polymerase [Leptospira borgpetersenii str. 200901122]
gi|410796732|gb|EKR98856.1| poly(A) polymerase [Leptospira borgpetersenii str. 200901122]
Length = 493
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 129/241 (53%), Gaps = 11/241 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A LGL+ K A+ + +E+ SR++ E N + + + LL++L
Sbjct: 208 AEILGLNIEKTTSKAIRKHKAELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGLLEVL 267
Query: 298 L 298
Sbjct: 268 F 268
>gi|292491190|ref|YP_003526629.1| poly(A) polymerase [Nitrosococcus halophilus Nc4]
gi|291579785|gb|ADE14242.1| poly(A) polymerase [Nitrosococcus halophilus Nc4]
Length = 402
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+L LK GF AYLVGGCVRDLLL PKDFDV T A +QIR F ++GRRF +
Sbjct: 1 MLYRLKKAGFSAYLVGGCVRDLLLGHEPKDFDVTTDARPEQIRDLFRSCRLVGRRFRLAH 60
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F G + ++S YG E D WR RDF++N+L+++
Sbjct: 61 VRFGRDIIEVATFRGPPGKGLSENGRIVSDNVYGTLEQDA--WR----RDFSVNALYYNI 114
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+ DY G+ DL+ +LR + + ED R+LR +R AA+LG +F + + +
Sbjct: 115 RDFSVVDYTGGMEDLKAGRLRLIGDPVTRYREDPVRMLRAVRFAAKLGFTFHPESEKPIW 174
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
L+ S++ + +R+ E+ + G A + LLR ++L + L P
Sbjct: 175 DLAPSLQEIPSARLFEEVLKLFLGGCAVQTFELLRHFHLFQWLFP 219
>gi|409422639|ref|ZP_11259730.1| poly(A) polymerase [Pseudomonas sp. HYS]
Length = 462
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 135/266 (50%), Gaps = 19/266 (7%)
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
+ ++S + R + + +++ L++ G+QAYLVGGCVRD LL PKDFDV T+A
Sbjct: 24 EVINSGQHSLQRGQFSRHAVSIVERLQNAGYQAYLVGGCVRDQLLGITPKDFDVATSATP 83
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE-----------TVLL 162
+Q+R +F + IIGRRF + +H +IEV++F A H E +E +L
Sbjct: 84 EQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFR--ANHPESEEENSHTSSRNESGRIL 141
Query: 163 SQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 222
YG E D R RDFTIN+L++DP +I DYANG+ D+R +R +
Sbjct: 142 RDNVYGTLEEDAQR------RDFTINALYYDPVSERILDYANGVHDIRNRLIRLIGDPTQ 195
Query: 223 SFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAE 282
+ ED R+LR +R AA+L K + L+ + + +R+ E + G A
Sbjct: 196 RYQEDPVRMLRAVRFAAKLNFGIEKHTVQPIRQLAPMLREIPAARLFEESLKLFLSGQAA 255
Query: 283 SSICLLRRYNLLKILLPFHAAYLDQQ 308
+ +L L L P A L++
Sbjct: 256 DTFEMLVDLELFDPLFPASAEALEEH 281
>gi|417778102|ref|ZP_12425912.1| poly(A) polymerase [Leptospira weilii str. 2006001853]
gi|410781763|gb|EKR66332.1| poly(A) polymerase [Leptospira weilii str. 2006001853]
Length = 490
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 129/241 (53%), Gaps = 11/241 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A LGL+ K A+ + +E+ SR++ E N + + + LL++L
Sbjct: 208 AEILGLNIEKTTSKAIRKHKAELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGLLEVL 267
Query: 298 L 298
Sbjct: 268 F 268
>gi|398942092|ref|ZP_10670122.1| poly(A) polymerase [Pseudomonas sp. GM41(2012)]
gi|398161049|gb|EJM49294.1| poly(A) polymerase [Pseudomonas sp. GM41(2012)]
Length = 466
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 127/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQNAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 105 IHFGREIIEVATFR--ANHPQNDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 156
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 RDFTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLN 216
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 217 FGIEKHSAAPIRELAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASA 276
Query: 303 AYLD 306
L+
Sbjct: 277 EALE 280
>gi|307249388|ref|ZP_07531380.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|306858574|gb|EFM90638.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
Length = 510
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 137/253 (54%), Gaps = 14/253 (5%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
TV++ + IT P+ + +++ L+ GF+AY+VGGC+RDLLL PKDFDV T A +
Sbjct: 70 TVNAGHYDITPKDFPKNALAIVEKLQRAGFEAYVVGGCIRDLLLGHKPKDFDVATNAKPE 129
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFET-VAKHGEGK------ETVLLSQIP 166
+I++ F R +IGRRF + + + EV++F A H K E +LL
Sbjct: 130 EIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHNSDKISKVSEEGMLLRDNV 189
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG D R RDF++NSL++DP N I+D+ +GI+DL+ KL + + + E
Sbjct: 190 YGTLREDAQR------RDFSVNSLYYDPKHNLIFDFFDGIADLKAGKLHLIGDPVVRYQE 243
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K DT + L+ ++ + +R+ E + G +
Sbjct: 244 DPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLKLFQSGQGFKTYQ 303
Query: 287 LLRRYNLLKILLP 299
L+R+Y L + L P
Sbjct: 304 LMRQYGLFEPLFP 316
>gi|319896476|ref|YP_004134669.1| poly polymerase [Haemophilus influenzae F3031]
gi|317431978|emb|CBY80326.1| probable poly polymerase [Haemophilus influenzae F3031]
Length = 452
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 133/244 (54%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 39 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 98
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D R RD
Sbjct: 99 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR------RD 150
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 151 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 210
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y L + L P ++Y
Sbjct: 211 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSSY 270
Query: 305 LDQQ 308
++
Sbjct: 271 FTEK 274
>gi|359726099|ref|ZP_09264795.1| tRNA nucleotidyltransferase [Leptospira weilii str. 2006001855]
Length = 489
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 129/241 (53%), Gaps = 11/241 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A LGL+ K A+ + +E+ SR++ E N + + + LL++L
Sbjct: 208 AEILGLNIEKTTSKAIRKHKAELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGLLEVL 267
Query: 298 L 298
Sbjct: 268 F 268
>gi|145642144|ref|ZP_01797713.1| polyA polymerase [Haemophilus influenzae R3021]
gi|145273135|gb|EDK13012.1| polyA polymerase [Haemophilus influenzae 22.4-21]
Length = 509
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 18/247 (7%)
Query: 72 SWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRF 130
+ V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF
Sbjct: 93 ALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRF 152
Query: 131 PICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSI 181
+ + +IEV++F A H + + E +LL YG E D R
Sbjct: 153 RLAHIMFGRDIIEVATFR--ANHNDARNENQAKQSNEGMLLRDNVYGTIEQDAAR----- 205
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L
Sbjct: 206 -RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 264
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
+ K + + L+ ++ + +R+ E +L G + LLR+Y L + L P
Sbjct: 265 DMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 324
Query: 302 AAYLDQQ 308
+ Y ++
Sbjct: 325 SPYFTEK 331
>gi|118594498|ref|ZP_01551845.1| poly(A) polymerase [Methylophilales bacterium HTCC2181]
gi|118440276|gb|EAV46903.1| poly(A) polymerase [Methylophilales bacterium HTCC2181]
Length = 411
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 6/225 (2%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
++K+LK ++AY+VGG +RD+L+ + PKDFD+ T A +QI+ F RS IIGRRF +
Sbjct: 34 IIKVLKKNNYEAYIVGGAIRDILMNKNPKDFDIATDATPEQIKLLFRRSRIIGRRFKLVH 93
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEVS+F + E + YG + D R RDFT NS++++P
Sbjct: 94 VMDGRGIIEVSTFRAKPHNKEVMRNGVTKDNEYGTLKEDAER------RDFTCNSIYYNP 147
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+ D G+ D+R KL + F ED RILR +R +A+L L+ K+I A+
Sbjct: 148 LTKVLIDLYGGVKDIRAKKLAMIGDPKKRFDEDSVRILRAIRFSAKLNLTIDKNILEAIE 207
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
S S ++ + SR+ E+ + G A S L +R+NL K P
Sbjct: 208 SKKSQLQSIPYSRLFDEIMKLFLTGHALQSFDLFKRFNLSKYYFP 252
>gi|291613415|ref|YP_003523572.1| poly(A) polymerase [Sideroxydans lithotrophicus ES-1]
gi|291583527|gb|ADE11185.1| poly(A) polymerase [Sideroxydans lithotrophicus ES-1]
Length = 447
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 142/280 (50%), Gaps = 17/280 (6%)
Query: 79 LKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIK 138
L++ GF+A++VGG VRDLLL R PKDFDV T A ++++R F R+ IIGRRF + V
Sbjct: 48 LQAAGFKAFVVGGAVRDLLLDRQPKDFDVATDATPEEVKRVFRRARIIGRRFRLVHVMFG 107
Query: 139 GSVIEVSSFETVAKHGEGKET----VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
+EVS+F A E ET +L +G E D R RDFT N LF+DP
Sbjct: 108 EETVEVSTFRR-AIDAEDAETDEHGRILRDNEFGDQEQDAAR------RDFTANGLFYDP 160
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I+DY +G D+R LR + + + ED R+LR +R++A+LG+ +
Sbjct: 161 ATQEIFDYHHGYEDIRANTLRMIGDPEVRYREDPVRMLRAVRLSAKLGMKLDPATAAPIS 220
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITA 314
+ + + ++R+ E+ +L G A I LR L +LP L+Q G+
Sbjct: 221 KMKELLSNVPEARLFDEMLKLLLSGQALPCIKKLRAMELHHGMLPMLDVILEQPMGE--- 277
Query: 315 ENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVS 354
+M N D+ ++ ++P L +H+ L +
Sbjct: 278 ---KFVMLALQNTDQRIAEEKPTSPAFLFAALLWHEVLAA 314
>gi|34497087|ref|NP_901302.1| polynucleotide adenylyltransferase [Chromobacterium violaceum ATCC
12472]
gi|34102944|gb|AAQ59308.1| polynucleotide adenylyltransferase [Chromobacterium violaceum ATCC
12472]
Length = 450
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 144/289 (49%), Gaps = 11/289 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + V L+ GF A++VGG VRDL+L PKDFDV T A +Q+ F
Sbjct: 30 GIRRDQLSHAALRVTSRLQEAGFSAFVVGGAVRDLMLGVSPKDFDVATNATPEQVHHLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
RS IIGRRF I V + IEV++F + + +++ +G E D R
Sbjct: 90 RSRIIGRRFRIVHVMMGPETIEVTTFRGGSVDDTNETGRIMADNSFGSQEEDAHR----- 144
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+LF+DP + DY +G+ DL KL + + ED R+LR +R+AA+L
Sbjct: 145 -RDFTVNALFYDPSDETVIDYHHGVKDLHAKKLVMIGQPARRYQEDPVRMLRAVRLAAKL 203
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
G +D + + + +++ +R+ EL +L G A + + LR L + + P
Sbjct: 204 GFEIDEDTKKPIRAHAHLLKKEPPARLFDELLKLLMSGHAYACLKKLREEGLARGVFPLL 263
Query: 302 AAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQ 350
A +D + G E+ + + L N D + D+P + L + Q
Sbjct: 264 DAVIDDKGG----EDAFLKLSL-DNTDARLRADKPISVGFLLATLLWRQ 307
>gi|418687889|ref|ZP_13249046.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
gi|410737313|gb|EKQ82054.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
Length = 487
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 122/219 (55%), Gaps = 11/219 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
A LGL+ K A+ + +E+ SR++ E N +
Sbjct: 208 AKILGLNIEKTTAKAIRKHKTELEKASSSRMLEEYNKIF 246
>gi|330504808|ref|YP_004381677.1| poly(A) polymerase [Pseudomonas mendocina NK-01]
gi|328919094|gb|AEB59925.1| poly(A) polymerase [Pseudomonas mendocina NK-01]
Length = 462
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 124/235 (52%), Gaps = 16/235 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ L+ G+QAYLVGGCVRDLLL PKDFDV T+A +Q+R +F + +IGRRF +
Sbjct: 45 VVERLQKAGYQAYLVGGCVRDLLLDIDPKDFDVATSATPEQVRAEFRNARVIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETV----------LLSQIPYGCDEIDLVRWRNSIHRD 184
VH +IEV++F GE +E +L YG E D R RD
Sbjct: 105 VHFGREIIEVATFRANHPQGEEEENSNQAARHESGRILRDNVYGTLEDDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP I DYA G+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPTQEHILDYARGMHDVRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAKLDFE 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
K + L+ + + +R+ E+ + G AE + LL ++L L P
Sbjct: 219 IEKHSAAPIRRLAPMLRDIPSARLFDEVLKLFLAGYAEYTFDLLIEHDLFAQLFP 273
>gi|325983710|ref|YP_004296112.1| poly(A) polymerase [Nitrosomonas sp. AL212]
gi|325533229|gb|ADZ27950.1| poly(A) polymerase [Nitrosomonas sp. AL212]
Length = 462
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 160/336 (47%), Gaps = 35/336 (10%)
Query: 35 MCREMCSDSFNQEVD----VSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVG 90
M R++ FN++ ++ + S++ GI I + + L+ GF AYLVG
Sbjct: 1 MIRKLLRKVFNRKASAPESLTKLNIIASKHHGIRSNQITPCTLKIALNLQQAGFSAYLVG 60
Query: 91 GCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF--- 147
G VRDLLL VPKDFDV T A +++ + F RS IIGRRF + V +EVS+F
Sbjct: 61 GAVRDLLLGLVPKDFDVATNATPEEVHKIFRRSRIIGRRFRLVHVMCGAETVEVSTFRGP 120
Query: 148 -----------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFL 196
+++ +HG LL +G E D +R RDFT+N+LF+DP
Sbjct: 121 SPDEDEDPAFKQSIDQHGR-----LLHDNVFGSQEEDAMR------RDFTVNALFYDPVK 169
Query: 197 NKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSL 256
+I DY +G D++ ++R + F ED R+LR +R+A +L + + L
Sbjct: 170 EEILDYLHGYEDIKARRMRIIGDPVQRFREDPIRLLRAVRLATKLDMQIDAQTAKPIGDL 229
Query: 257 SSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAEN 316
+ ++ + SR+ E+ +L G A + + LR L LLP L+Q G+
Sbjct: 230 APLLQNVPPSRLFDEMLKLLLSGHALACVVELRMRGLHHGLLPMLDVILEQPLGE----- 284
Query: 317 PMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
+ N D+ V ++P +L +H+ L
Sbjct: 285 -RFITIALKNTDERVRQNKPVSPGFLFAILLWHEVL 319
>gi|398338484|ref|ZP_10523187.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
kirschneri serovar Bim str. 1051]
gi|418675936|ref|ZP_13237222.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|418694793|ref|ZP_13255825.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. H1]
gi|418739420|ref|ZP_13295804.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
gi|421090625|ref|ZP_15551417.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. 200802841]
gi|421108429|ref|ZP_15568967.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. H2]
gi|421130165|ref|ZP_15590362.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. 2008720114]
gi|400323701|gb|EJO71549.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|409957419|gb|EKO16328.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. H1]
gi|410000839|gb|EKO51467.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. 200802841]
gi|410006422|gb|EKO60180.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. H2]
gi|410358624|gb|EKP05780.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. 2008720114]
gi|410753220|gb|EKR10189.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
Length = 487
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 122/219 (55%), Gaps = 11/219 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
A LGL+ K A+ + +E+ SR++ E N +
Sbjct: 208 AEILGLNIEKTTAKAIRKHKTELEKASSSRMLEEYNKIF 246
>gi|359780726|ref|ZP_09283951.1| poly(A) polymerase [Pseudomonas psychrotolerans L19]
gi|359370786|gb|EHK71352.1| poly(A) polymerase [Pseudomonas psychrotolerans L19]
Length = 463
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/242 (35%), Positives = 126/242 (52%), Gaps = 15/242 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+ L+ G+QAYLVGGCVRDLLL PKDFDV T+A +Q+R +F + +IGRRF +
Sbjct: 45 VVDRLEKAGYQAYLVGGCVRDLLLGFEPKDFDVATSATPEQVRAEFRNARVIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETV---------LLSQIPYGCDEIDLVRWRNSIHRDF 185
VH +IEV++F G+ ++ +L YG E D R RDF
Sbjct: 105 VHFGREIIEVATFRANHPTGDAEDETQGSRHESGRILRDNIYGNQEQDAQR------RDF 158
Query: 186 TINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSF 245
TIN+L++D +I DYANG D+R ++R + + ED R+LR +R AA+L
Sbjct: 159 TINALYYDASGERILDYANGTQDIRLRQIRLIGDPEQRYLEDPVRMLRAVRFAAKLDFEI 218
Query: 246 CKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL 305
+ L+ + + R+ E+ +L G AE + LL +Y L L P L
Sbjct: 219 EAATAEPISRLAPLLRDIPAPRLFDEVIKLLLGGKAERTFELLCQYGLFAPLFPASGEAL 278
Query: 306 DQ 307
++
Sbjct: 279 ER 280
>gi|378696133|ref|YP_005178091.1| poly(A) polymerase I [Haemophilus influenzae 10810]
gi|301168656|emb|CBW28247.1| poly(A) polymerase I [Haemophilus influenzae 10810]
Length = 452
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 133/244 (54%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 39 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 98
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D R RD
Sbjct: 99 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR------RD 150
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 151 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 210
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y L + L P ++Y
Sbjct: 211 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSSY 270
Query: 305 LDQQ 308
++
Sbjct: 271 FTEK 274
>gi|269138047|ref|YP_003294747.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda
EIB202]
gi|387866778|ref|YP_005698247.1| Poly(A) polymerase [Edwardsiella tarda FL6-60]
gi|267983707|gb|ACY83536.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda
EIB202]
gi|304558091|gb|ADM40755.1| Poly(A) polymerase [Edwardsiella tarda FL6-60]
Length = 456
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 153/320 (47%), Gaps = 31/320 (9%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 ISRQQISENALKVLYRLNKSGYEAYLVGGGVRDLLLGKRPKDFDVTTNATPEQVRKLFRN 86
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG--------EGKETVLLSQIPYGCDEIDL 174
++GRRF + V +IEV++F +H +GK +LL YG E D
Sbjct: 87 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEHADESKNIAQQGKNGMLLRDNVYGNIEEDA 146
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++ + DY G++DLR ++R + + ED R+LR
Sbjct: 147 QR------RDFTINSLYYSVADFSVRDYTGGLNDLRAGQIRLIGDPETRYREDPVRMLRA 200
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L +S + + L+S + + +R+ E +L G + LR Y L
Sbjct: 201 VRFAAKLQMSISPETAAPIAHLASLLRDIPAARLFEEALKLLQAGYGYETYLKLREYQLF 260
Query: 295 KILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWVGLL 346
+ L P + ++PM +L ++ N D + D PA LW L+
Sbjct: 261 QPLFPVICRHFTP-----NGDSPMEKILAQVLKNTDHRIQNDMRVNPAFLFAAMLWYPLI 315
Query: 347 SFHQALVSDP----QDAFVV 362
Q L + DAF +
Sbjct: 316 ELAQKLTQEGGLTYHDAFAL 335
>gi|319775006|ref|YP_004137494.1| poly polymerase [Haemophilus influenzae F3047]
gi|317449597|emb|CBY85802.1| probable poly polymerase [Haemophilus influenzae F3047]
Length = 452
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 133/244 (54%), Gaps = 18/244 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 39 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 98
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D R RD
Sbjct: 99 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR------RD 150
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 151 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 210
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + + L+ ++ + +R+ E +L G + LLR+Y L + L P ++Y
Sbjct: 211 LEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGRGVKTYRLLRQYGLFEQLFPALSSY 270
Query: 305 LDQQ 308
++
Sbjct: 271 FTEK 274
>gi|449107566|ref|ZP_21744220.1| poly(A) polymerase [Treponema denticola ASLM]
gi|451969259|ref|ZP_21922488.1| poly(A) polymerase [Treponema denticola US-Trep]
gi|448961766|gb|EMB42461.1| poly(A) polymerase [Treponema denticola ASLM]
gi|451701963|gb|EMD56405.1| poly(A) polymerase [Treponema denticola US-Trep]
Length = 380
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 133/248 (53%), Gaps = 16/248 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L SQGF+AY+VGG VRDLL+ VPKDFD+ T+A +IR+ F S +IGRRF +
Sbjct: 39 IIQRLNSQGFEAYIVGGAVRDLLIGHVPKDFDIATSAEPSKIRKMFRNSRVIGRRFRLVH 98
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
+ + EVS+F + G + +G + D+ R RDFT+N+L++DP
Sbjct: 99 IFFGEKIYEVSTFRSTEDGSIGNK--------FGTIDEDVHR------RDFTLNALYYDP 144
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+ DY +G+ D+R K+R +IP L F+ED R++R ++ AA + +
Sbjct: 145 IHELVIDYVDGVKDIRAKKIRPIIPLQLIFSEDPVRMIRAIKYAAMTNSGIPFFLQLQIR 204
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA--GKI 312
+ +E + SRI E+N ++ G A I L + L L P A++D + KI
Sbjct: 205 KNAHLLEFVSPSRITEEINKIIFSGHASDIIKKLLDFKLYVYLQPGACAFIDSSSKFKKI 264
Query: 313 TAENPMML 320
EN +L
Sbjct: 265 YIENLALL 272
>gi|449131460|ref|ZP_21767674.1| poly(A) polymerase [Treponema denticola SP37]
gi|448939160|gb|EMB20078.1| poly(A) polymerase [Treponema denticola SP37]
Length = 380
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 136/250 (54%), Gaps = 20/250 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L SQGF+AY+VGG VRDLL+ VPKDFD+ T+A +IR+ F S +IGRRF +
Sbjct: 39 IIQRLNSQGFEAYIVGGAVRDLLIGHVPKDFDIATSAEPSKIRKMFRNSRVIGRRFRLVH 98
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
+ + EVS+F + G + +G + D+ R RDFT+N+L++DP
Sbjct: 99 IFFGEKIYEVSTFRSTEDGSIGNK--------FGTIDEDVHR------RDFTLNALYYDP 144
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL--GLSFCKDIDTA 252
+ DY +G+ D+R K+R +IP L F+ED R++R ++ AA G+ F +
Sbjct: 145 IHELVIDYVDGVKDIRAKKIRPIIPLQLIFSEDPVRMIRAIKYAAMTDSGIPFF--LQLQ 202
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA--G 310
+ + +E + SRI E+N ++ G A I L + L L P A++D +
Sbjct: 203 IRKNAHLLEFVSPSRITEEINKIIFSGHASDIIKKLLDFKLYVYLQPGACAFIDSSSKFK 262
Query: 311 KITAENPMML 320
KI EN +L
Sbjct: 263 KIYIENLALL 272
>gi|387812966|ref|YP_005428443.1| poly(A) polymerase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381337973|emb|CCG94020.1| poly(A) polymerase I. Polymerase that creates the 3' poly(A) tail
found in some mRNA's. Seems to be involved in plasmid
copy number control. Interacts with csdA, rhlE and srmB
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 455
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 134/254 (52%), Gaps = 16/254 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R+MI +P+ VL L G++AYLVGG VRD+LL PKDFD+ T A +++ F
Sbjct: 36 VSRSMISEPAKKVLHRLNKSGYEAYLVGGGVRDILLGGQPKDFDIATNATPEEVHDLFRN 95
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAK----------HGEGKETVLLSQIPYGCDEI 172
S +IGRRF I V +IEV++F A+ H + +LL YG E
Sbjct: 96 SRLIGRRFRIVHVVFGREIIEVTTFRGNARDTDDDLADDEHKTSEHGLLLRDNVYGNQEE 155
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +R RDFTIN+L++ I D+ANG+ DL+ ++R + + ED R+L
Sbjct: 156 DALR------RDFTINALYYCIRDFSIIDFANGVQDLKNRQIRLIGDPETRYREDPVRML 209
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R AA+L + + + L+ + + +R+ E+ + S G E++ LL+ Y
Sbjct: 210 RAIRFAAKLDFEIEPETEAPIRELAPLLAHIPPARLFDEVLKLFSAGHGEATYRLLQDYG 269
Query: 293 LLKILLPFHAAYLD 306
LL L P A LD
Sbjct: 270 LLAPLFPETARALD 283
>gi|407368603|ref|ZP_11115135.1| poly(A) polymerase [Pseudomonas mandelii JR-1]
Length = 466
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 127/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQNAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 105 IHFGREIIEVATFR--ANHPQNDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 156
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 RDFTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLN 216
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 217 FGIEKHSALPIRDLAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASA 276
Query: 303 AYLD 306
L+
Sbjct: 277 EALE 280
>gi|417768733|ref|ZP_12416660.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Pomona str. Pomona]
gi|418679778|ref|ZP_13241035.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|418717541|ref|ZP_13277203.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. UI 08452]
gi|421125964|ref|ZP_15586208.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|421136816|ref|ZP_15596913.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|400328379|gb|EJO80611.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|409949379|gb|EKN99356.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Pomona str. Pomona]
gi|410018998|gb|EKO85826.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410436616|gb|EKP85728.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410787138|gb|EKR80873.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. UI 08452]
gi|455670166|gb|EMF35203.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Pomona str. Fox 32256]
Length = 487
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 122/219 (55%), Gaps = 11/219 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
A LGL+ K A+ + +E+ SR++ E N +
Sbjct: 208 AEILGLNIEKTTAKAIRKHKTELEKASSSRMLEEYNKIF 246
>gi|449116061|ref|ZP_21752514.1| poly(A) polymerase [Treponema denticola H-22]
gi|448954581|gb|EMB35358.1| poly(A) polymerase [Treponema denticola H-22]
Length = 380
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 136/250 (54%), Gaps = 20/250 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L SQGF+AY+VGG VRDLL+ VPKDFD+ T+A +IR+ F S +IGRRF +
Sbjct: 39 IIQRLNSQGFEAYIVGGAVRDLLIGHVPKDFDIATSAEPSKIRKMFRNSRVIGRRFRLVH 98
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
+ + EVS+F + G + +G + D+ R RDFT+N+L++DP
Sbjct: 99 IFFGEKIYEVSTFRSTEDGSIGNK--------FGTIDEDVHR------RDFTLNALYYDP 144
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL--GLSFCKDIDTA 252
+ DY +G+ D+R K+R +IP L F+ED R++R ++ AA G+ F +
Sbjct: 145 IHELVIDYVDGVKDIRAKKIRPIIPLQLIFSEDPVRMIRAIKYAAMTDSGIPFF--LQLQ 202
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA--G 310
+ + +E + SRI E+N ++ G A I L + L L P A++D +
Sbjct: 203 IRKNAHLLEFVSPSRITEEINKIIFSGHASDIIKKLLDFKLYVYLQPGACAFIDSSSKFK 262
Query: 311 KITAENPMML 320
KI EN +L
Sbjct: 263 KIYIENLALL 272
>gi|24215701|ref|NP_713182.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
interrogans serovar Lai str. 56601]
gi|304570488|ref|YP_001035.2| poly A polymerase [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|386074886|ref|YP_005989204.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
interrogans serovar Lai str. IPAV]
gi|417760228|ref|ZP_12408254.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. 2002000624]
gi|417765374|ref|ZP_12413336.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|417774488|ref|ZP_12422353.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. 2002000621]
gi|417785446|ref|ZP_12433150.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. C10069]
gi|418675491|ref|ZP_13236782.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. 2002000623]
gi|418693254|ref|ZP_13254317.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. FPW2026]
gi|418702287|ref|ZP_13263198.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Bataviae str. L1111]
gi|418705528|ref|ZP_13266392.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|418709225|ref|ZP_13270019.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|418723815|ref|ZP_13282649.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. UI 12621]
gi|418731397|ref|ZP_13289796.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. UI 12758]
gi|421087104|ref|ZP_15547945.1| putative polynucleotide adenylyltransferase [Leptospira santarosai
str. HAI1594]
gi|421104986|ref|ZP_15565579.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|421116506|ref|ZP_15576891.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|421120216|ref|ZP_15580530.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. Brem 329]
gi|24196872|gb|AAN50200.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
interrogans serovar Lai str. 56601]
gi|353458676|gb|AER03221.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
interrogans serovar Lai str. IPAV]
gi|400352311|gb|EJP04507.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|400356912|gb|EJP13070.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. FPW2026]
gi|409943795|gb|EKN89386.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. 2002000624]
gi|409951311|gb|EKO05826.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. C10069]
gi|409962613|gb|EKO26347.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. UI 12621]
gi|410011966|gb|EKO70072.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410347302|gb|EKO98221.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. Brem 329]
gi|410365296|gb|EKP20691.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|410430213|gb|EKP74583.1| putative polynucleotide adenylyltransferase [Leptospira santarosai
str. HAI1594]
gi|410575821|gb|EKQ38838.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. 2002000621]
gi|410577653|gb|EKQ45523.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. 2002000623]
gi|410758806|gb|EKR25032.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Bataviae str. L1111]
gi|410764794|gb|EKR35497.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410770561|gb|EKR45780.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410773929|gb|EKR53950.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. UI 12758]
gi|456825339|gb|EMF73735.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Canicola str. LT1962]
Length = 487
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 122/219 (55%), Gaps = 11/219 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
A LGL+ K A+ + +E+ SR++ E N +
Sbjct: 208 AEILGLNIEKTTAKAIRKHKTELEKASSSRMLEEYNKIF 246
>gi|418666425|ref|ZP_13227848.1| poly(A) polymerase [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410757789|gb|EKR19396.1| poly(A) polymerase [Leptospira interrogans serovar Pyrogenes str.
2006006960]
Length = 487
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 122/219 (55%), Gaps = 11/219 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
A LGL+ K A+ + +E+ SR++ E N +
Sbjct: 208 AEILGLNIEKTTAKAIRKHKTELEKASSSRMLEEYNKIF 246
>gi|449123786|ref|ZP_21760108.1| poly(A) polymerase [Treponema denticola OTK]
gi|448944039|gb|EMB24921.1| poly(A) polymerase [Treponema denticola OTK]
Length = 380
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 136/250 (54%), Gaps = 20/250 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L SQGF+AY+VGG VRDLL+ VPKDFD+ T+A +IR+ F S +IGRRF +
Sbjct: 39 IIQRLNSQGFEAYIVGGAVRDLLIGHVPKDFDIATSAEPSKIRKMFRNSRVIGRRFRLVH 98
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
+ + EVS+F + G + +G + D+ R RDFT+N+L++DP
Sbjct: 99 IFFGEKIYEVSTFRSTEDGSIGNK--------FGTIDEDVHR------RDFTLNALYYDP 144
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL--GLSFCKDIDTA 252
+ DY +G+ D+R K+R +IP L F+ED R++R ++ AA G+ F +
Sbjct: 145 IHELVIDYVDGVKDIRAKKIRPIIPLQLIFSEDPVRMIRAIKYAAMTDSGIPFF--LQLQ 202
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA--G 310
+ + +E + SRI E+N ++ G A I L + L L P A++D +
Sbjct: 203 IRKNAHLLEFVSPSRITEEINKIIFSGHASDIIKKLLDFKLYVYLQPGACAFIDSSSKFK 262
Query: 311 KITAENPMML 320
KI EN +L
Sbjct: 263 KIYIENLALL 272
>gi|410089648|ref|ZP_11286262.1| poly(A) polymerase [Pseudomonas viridiflava UASWS0038]
gi|409763183|gb|EKN48168.1| poly(A) polymerase [Pseudomonas viridiflava UASWS0038]
Length = 467
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 130/244 (53%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 46 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 106 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 157
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 158 RDFTINALYYDPVTERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 217
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + L++ + + +R+ E+ + G A S+ +L L + L P +
Sbjct: 218 FGIEKHSALPIRPLAAMLRDIPSARLFEEVLKLFLSGHAASTFEMLVDLELFEPLFPASS 277
Query: 303 AYLD 306
L+
Sbjct: 278 KALE 281
>gi|456865354|gb|EMF83714.1| poly(A) polymerase [Leptospira weilii serovar Topaz str. LT2116]
Length = 494
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 128/241 (53%), Gaps = 11/241 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAMEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A LGL+ K A+ +E+ SR++ E N + + + LL++L
Sbjct: 208 AEILGLNIEKTTSKAIRKHKVELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGLLEVL 267
Query: 298 L 298
Sbjct: 268 F 268
>gi|42527232|ref|NP_972330.1| polyA polymerase [Treponema denticola ATCC 35405]
gi|422342210|ref|ZP_16423150.1| PolyA polymerase [Treponema denticola F0402]
gi|449102447|ref|ZP_21739196.1| poly(A) polymerase [Treponema denticola AL-2]
gi|449109207|ref|ZP_21745845.1| poly(A) polymerase [Treponema denticola ATCC 33520]
gi|449119894|ref|ZP_21756285.1| poly(A) polymerase [Treponema denticola H1-T]
gi|449122290|ref|ZP_21758634.1| poly(A) polymerase [Treponema denticola MYR-T]
gi|41817656|gb|AAS12241.1| polyA polymerase family protein [Treponema denticola ATCC 35405]
gi|325474278|gb|EGC77466.1| PolyA polymerase [Treponema denticola F0402]
gi|448948770|gb|EMB29603.1| poly(A) polymerase [Treponema denticola MYR-T]
gi|448948893|gb|EMB29723.1| poly(A) polymerase [Treponema denticola H1-T]
gi|448959853|gb|EMB40571.1| poly(A) polymerase [Treponema denticola ATCC 33520]
gi|448966419|gb|EMB47075.1| poly(A) polymerase [Treponema denticola AL-2]
Length = 380
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 136/250 (54%), Gaps = 20/250 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L SQGF+AY+VGG VRDLL+ VPKDFD+ T+A +IR+ F S +IGRRF +
Sbjct: 39 IIQRLNSQGFEAYIVGGAVRDLLIGHVPKDFDIATSAEPSKIRKMFRNSRVIGRRFRLVH 98
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
+ + EVS+F + G + +G + D+ R RDFT+N+L++DP
Sbjct: 99 IFFGEKIYEVSTFRSTEDGSIGNK--------FGTIDEDVHR------RDFTLNALYYDP 144
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL--GLSFCKDIDTA 252
+ DY +G+ D+R K+R +IP L F+ED R++R ++ AA G+ F +
Sbjct: 145 IHELVIDYVDGVKDIRAKKIRPIIPLQLIFSEDPVRMIRAIKYAAMTDSGIPFF--LQLQ 202
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA--G 310
+ + +E + SRI E+N ++ G A I L + L L P A++D +
Sbjct: 203 IRKNAHLLEFVSPSRITEEINKIIFSGHASDIIKKLLDFKLYVYLQPGACAFIDSSSKFK 262
Query: 311 KITAENPMML 320
KI EN +L
Sbjct: 263 KIYIENLALL 272
>gi|398997937|ref|ZP_10700738.1| poly(A) polymerase [Pseudomonas sp. GM21]
gi|398122420|gb|EJM12013.1| poly(A) polymerase [Pseudomonas sp. GM21]
Length = 466
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 127/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQNAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 105 IHFGREIIEVATFR--ANHPQNDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 156
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 RDFTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLN 216
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 217 FGIEKHSALPIRELAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASA 276
Query: 303 AYLD 306
L+
Sbjct: 277 EALE 280
>gi|145630638|ref|ZP_01786417.1| polyA polymerase [Haemophilus influenzae R3021]
gi|144983764|gb|EDJ91214.1| polyA polymerase [Haemophilus influenzae R3021]
Length = 452
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 18/247 (7%)
Query: 72 SWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRF 130
+ V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF
Sbjct: 36 ALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRF 95
Query: 131 PICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSI 181
+ + +IEV++F A H + + E +LL YG E D R
Sbjct: 96 RLAHIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR----- 148
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L
Sbjct: 149 -RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 207
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
+ K + + L+ ++ + +R+ E +L G + LLR+Y L + L P
Sbjct: 208 DMFLEKPSEQPISELAPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267
Query: 302 AAYLDQQ 308
+ Y ++
Sbjct: 268 SPYFTEK 274
>gi|398845147|ref|ZP_10602191.1| poly(A) polymerase [Pseudomonas sp. GM84]
gi|398253860|gb|EJN38973.1| poly(A) polymerase [Pseudomonas sp. GM84]
Length = 462
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 128/245 (52%), Gaps = 19/245 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRDL+L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H E + +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--AHHSEDDQGDSHRSSHNASGRILRDNVYGSLEEDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L++DP ++ DYANG+ D+R LR + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYYDPVSERVLDYANGVHDIRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E + G + +L L + L P A
Sbjct: 217 GIEKHTFKPIRELAPMLREIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASAQ 276
Query: 304 YLDQQ 308
L+++
Sbjct: 277 ALEER 281
>gi|418721117|ref|ZP_13280305.1| poly(A) polymerase [Leptospira borgpetersenii str. UI 09149]
gi|418735126|ref|ZP_13291538.1| poly(A) polymerase [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|421093081|ref|ZP_15553808.1| poly(A) polymerase [Leptospira borgpetersenii str. 200801926]
gi|410364044|gb|EKP15070.1| poly(A) polymerase [Leptospira borgpetersenii str. 200801926]
gi|410742596|gb|EKQ91344.1| poly(A) polymerase [Leptospira borgpetersenii str. UI 09149]
gi|410749382|gb|EKR02274.1| poly(A) polymerase [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|456891108|gb|EMG01850.1| poly(A) polymerase [Leptospira borgpetersenii str. 200701203]
Length = 489
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 128/241 (53%), Gaps = 11/241 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKILRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A LGL K A+ + +E+ SR++ E N + + + LL++L
Sbjct: 208 AEILGLDVEKTTSKAIRKHKAELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGLLEVL 267
Query: 298 L 298
Sbjct: 268 F 268
>gi|116327797|ref|YP_797517.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116331544|ref|YP_801262.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116120541|gb|ABJ78584.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116125233|gb|ABJ76504.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 489
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 128/241 (53%), Gaps = 11/241 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINSLYYDVRNDSIIDYVGGFEDIRNKILRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A LGL K A+ + +E+ SR++ E N + + + LL++L
Sbjct: 208 AEILGLDVEKTTSKAIRKHKAELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGLLEVL 267
Query: 298 L 298
Sbjct: 268 F 268
>gi|91774955|ref|YP_544711.1| poly(A) polymerase [Methylobacillus flagellatus KT]
gi|91708942|gb|ABE48870.1| poly(A) polymerase [Methylobacillus flagellatus KT]
Length = 452
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 153/298 (51%), Gaps = 19/298 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I R +I + L+ GF+A++VGG VRDLLL++ PKDFDV T A +Q+ R F R
Sbjct: 38 IDRRLISNAAIKTTDALQKAGFEAFIVGGAVRDLLLKKRPKDFDVATDATPEQVHRIFRR 97
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFET--VAKHGEGKET---VLLSQIPYGCDEIDLVRW 177
S IIGRRF + V IEVS+F +A+ G+ K T +L +G E D R
Sbjct: 98 SRIIGRRFRLVHVMFGDETIEVSTFRGSHLAEAGDAKVTDSGRILRDNVFGSQEEDAAR- 156
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFT N+L++DP ++ D+ G++DL+ LR + + ED R+LR +R+
Sbjct: 157 -----RDFTANALYYDPSTEEVLDFHRGVADLQAGVLRMIGDPVTRYREDPVRMLRAVRL 211
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
+A+LGL + + + L+ + + SR+ E+ + G A S LR++ L L
Sbjct: 212 SAKLGLKLAPETERPILELAELLHDVPPSRLFDEMLKLFLSGHAIESANALRQHGLHHGL 271
Query: 298 LPFHAAYLDQQAGKITAENPMMLMRLFF-NLDKLVSCDRPADYTLWVGLLSFHQALVS 354
LP L+Q G+ +RL N D+ V D+P L +H+ L++
Sbjct: 272 LPLLDVVLEQPMGE-------RFVRLALKNTDERVLADKPVSPGFLFAALLWHEVLLA 322
>gi|15836499|ref|NP_301023.1| poly A polymerase [Chlamydophila pneumoniae J138]
gi|16752066|ref|NP_445432.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39]
gi|7189807|gb|AAF38681.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39]
gi|8979340|dbj|BAA99174.1| poly A polymerase [Chlamydophila pneumoniae J138]
Length = 430
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G+ AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 48 VIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKNCILVGKRFRLAH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E VL+++ +G E D++R RDFTIN LF+D
Sbjct: 108 IRFSKQIIEVSTFRS----GSTDEDVLITKDNLWGTPEEDVLR------RDFTINGLFYD 157
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P +I DY G++DLR LRT+ + F +D R+LR L+I +R + A+
Sbjct: 158 PEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSRSPFTVETQTQEAL 217
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + + ++R+ EL ML+ GAA++ LL +LL+IL P+
Sbjct: 218 IACRQELIKSSRARVFEELIKMLNSGAAKNFFQLLIENHLLEILFPY 264
>gi|33242334|ref|NP_877275.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183]
gi|384449859|ref|YP_005662461.1| poly(A) polymerase [Chlamydophila pneumoniae LPCoLN]
gi|33236845|gb|AAP98932.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183]
gi|269302757|gb|ACZ32857.1| poly(A) polymerase [Chlamydophila pneumoniae LPCoLN]
Length = 416
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G+ AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 34 VIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKNCILVGKRFRLAH 93
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E VL+++ +G E D++R RDFTIN LF+D
Sbjct: 94 IRFSKQIIEVSTFRS----GSTDEDVLITKDNLWGTPEEDVLR------RDFTINGLFYD 143
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P +I DY G++DLR LRT+ + F +D R+LR L+I +R + A+
Sbjct: 144 PEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSRSPFTVETQTQEAL 203
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + + ++R+ EL ML+ GAA++ LL +LL+IL P+
Sbjct: 204 IACRQELIKSSQARVFEELIKMLNSGAAKNFFQLLIENHLLEILFPY 250
>gi|343518103|ref|ZP_08755098.1| polynucleotide adenylyltransferase [Haemophilus pittmaniae HK 85]
gi|343394088|gb|EGV06637.1| polynucleotide adenylyltransferase [Haemophilus pittmaniae HK 85]
Length = 434
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 137/252 (54%), Gaps = 18/252 (7%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EI 125
MI + + V++ L+ QG++AYLVGGC+RDLLL + PKDFDV T A +Q+++ F R +
Sbjct: 1 MIQRNALTVVEKLQRQGYEAYLVGGCLRDLLLGKTPKDFDVATNARPEQVQKIFQRQCRL 60
Query: 126 IGRRFPICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVR 176
+GRRF + V VIEV++F A H + + + +LL YG E D R
Sbjct: 61 VGRRFRLAHVLFGRDVIEVATFR--ASHSDARNANQAKQNEQGMLLRDNVYGTLEQDAER 118
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFT+N+L+++P N ++D+ G+ DL+ KLR + + + ED R+LR +R
Sbjct: 119 ------RDFTVNALYYNPQDNSLHDFFGGLEDLKAGKLRLIGDPMVRYQEDPVRMLRSIR 172
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A+L + K + + L+ + + +R+ E +L G + LLR+Y L +
Sbjct: 173 FMAKLEMFLDKPSEAPIRQLAPLLANIPAARLFDESLKLLQTGNGVKTYQLLRQYGLFEP 232
Query: 297 LLPFHAAYLDQQ 308
L P Y ++
Sbjct: 233 LFPALMPYFTER 244
>gi|416014304|ref|ZP_11562163.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. B076]
gi|298159943|gb|EFI00982.1| Poly(A) polymerase [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320326088|gb|EFW82145.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. B076]
Length = 467
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 129/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 46 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 106 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 157
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 158 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 217
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + SL+ + + +R+ E+ + G A + +L L + L P +
Sbjct: 218 FGIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASS 277
Query: 303 AYLD 306
L+
Sbjct: 278 KALE 281
>gi|399001373|ref|ZP_10704088.1| poly(A) polymerase [Pseudomonas sp. GM18]
gi|398127789|gb|EJM17193.1| poly(A) polymerase [Pseudomonas sp. GM18]
Length = 466
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 127/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQNAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 105 IHFGREIIEVATFR--ANHPQNDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 156
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 RDFTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLN 216
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 217 FGIEKHSALPIRDLAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASA 276
Query: 303 AYLD 306
L+
Sbjct: 277 EALE 280
>gi|15618873|ref|NP_225159.1| Poly A polymerase [Chlamydophila pneumoniae CWL029]
gi|4377290|gb|AAD19102.1| Poly A Polymerase [Chlamydophila pneumoniae CWL029]
Length = 430
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G+ AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 48 VIKTLRKAGYIAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAIFKNCILVGKRFRLAH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E VL+++ +G E D++R RDFTIN LF+D
Sbjct: 108 IRFSKQIIEVSTFRS----GSTDEDVLITKDNLWGTPEEDVLR------RDFTINGLFYD 157
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P +I DY G++DLR LRT+ + F +D R+LR L+I +R + A+
Sbjct: 158 PEHEEIIDYTGGVNDLRNRYLRTIGDPFTRFKQDPVRMLRLLKILSRSPFTVETQTQEAL 217
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + + ++R+ EL ML+ GAA++ LL +LL+IL P+
Sbjct: 218 IACRQELIKSSQARVFEELIKMLNSGAAKNFFQLLIENHLLEILFPY 264
>gi|449111711|ref|ZP_21748280.1| poly(A) polymerase [Treponema denticola ATCC 33521]
gi|449113482|ref|ZP_21749987.1| poly(A) polymerase [Treponema denticola ATCC 35404]
gi|448956982|gb|EMB37735.1| poly(A) polymerase [Treponema denticola ATCC 33521]
gi|448959692|gb|EMB40411.1| poly(A) polymerase [Treponema denticola ATCC 35404]
Length = 380
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 136/250 (54%), Gaps = 20/250 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L SQGF+AY+VGG VRDLL+ VPKDFD+ T+A +IR+ F S +IGRRF +
Sbjct: 39 IIQRLNSQGFEAYIVGGAVRDLLIGHVPKDFDIATSAEPSKIRKMFRNSRVIGRRFRLVH 98
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
+ + EVS+F + G + +G + D+ R RDFT+N+L++DP
Sbjct: 99 IFFGEKIYEVSTFRSTEDGSIGNK--------FGTIDEDVHR------RDFTLNALYYDP 144
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL--GLSFCKDIDTA 252
+ DY +G+ D+R K+R +IP L F+ED R++R ++ AA G+ F +
Sbjct: 145 IHELVIDYVDGVKDIRAKKIRPIIPLQLIFSEDPVRMIRAIKYAAMTDSGIPFF--LQLQ 202
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA--G 310
+ + +E + SRI E+N ++ G A I L + L L P A++D +
Sbjct: 203 IRKNAHLLEFVSPSRITEEINKIIFSGHASDIIKKLLDFKLYVCLQPGACAFIDSSSKFK 262
Query: 311 KITAENPMML 320
KI EN +L
Sbjct: 263 KIYIENLALL 272
>gi|257484045|ref|ZP_05638086.1| poly(A) polymerase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|422597453|ref|ZP_16671726.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422683729|ref|ZP_16741987.1| poly(A) polymerase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|330987743|gb|EGH85846.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331013061|gb|EGH93117.1| poly(A) polymerase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 467
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 129/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 46 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 106 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 157
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 158 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 217
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + SL+ + + +R+ E+ + G A + +L L + L P +
Sbjct: 218 FGIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASS 277
Query: 303 AYLD 306
L+
Sbjct: 278 KALE 281
>gi|410084962|ref|ZP_11281683.1| Poly(A) polymerase [Morganella morganii SC01]
gi|421492524|ref|ZP_15939884.1| PCNB [Morganella morganii subsp. morganii KT]
gi|455738281|ref|YP_007504547.1| Poly(A) polymerase [Morganella morganii subsp. morganii KT]
gi|400193131|gb|EJO26267.1| PCNB [Morganella morganii subsp. morganii KT]
gi|409768607|gb|EKN52667.1| Poly(A) polymerase [Morganella morganii SC01]
gi|455419844|gb|AGG30174.1| Poly(A) polymerase [Morganella morganii subsp. morganii KT]
Length = 451
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 137/263 (52%), Gaps = 18/263 (6%)
Query: 55 TVDSRNL-GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
TV RN I+R I + + VL L GF AYLVGG VRDLLL R PKDFD+ T A
Sbjct: 10 TVIPRNSHSISRQDISENALKVLYRLNKSGFDAYLVGGGVRDLLLERKPKDFDIATNATP 69
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF-----------ETVAKHGEGKETVLL 162
++R+ F ++GRRF + + +IEV++F + A+ +GK +LL
Sbjct: 70 DEVRKLFRNCRLVGRRFRLAHIMFGPDIIEVATFRGPHDNNEPADDGKARSQQGKNGMLL 129
Query: 163 SQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 222
+G E D VR RDFTINSL++ + DY G++DL+ +R +
Sbjct: 130 RDNIFGTIEEDAVR------RDFTINSLYYSVADFTVRDYVGGLADLQQRIIRLIGDPET 183
Query: 223 SFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAE 282
+ ED R+LR +R AA+L ++ + + +LS+ + + +R+ E+ +L G
Sbjct: 184 RYREDPVRMLRAIRFAAKLDMTIEPETAAPIRTLSTLLRDIPPARLFEEVLKLLQAGDGH 243
Query: 283 SSICLLRRYNLLKILLPFHAAYL 305
+ LLR Y+LL +L P A L
Sbjct: 244 RTFELLREYDLLDMLFPLVAGPL 266
>gi|289628855|ref|ZP_06461809.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289651028|ref|ZP_06482371.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. 2250]
gi|422582553|ref|ZP_16657688.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|422607019|ref|ZP_16679023.1| poly(A) polymerase [Pseudomonas syringae pv. mori str. 301020]
gi|330867395|gb|EGH02104.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330890665|gb|EGH23326.1| poly(A) polymerase [Pseudomonas syringae pv. mori str. 301020]
Length = 467
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 129/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 46 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 106 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 157
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 158 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 217
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + SL+ + + +R+ E+ + G A + +L L + L P +
Sbjct: 218 FGIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASS 277
Query: 303 AYLD 306
L+
Sbjct: 278 KALE 281
>gi|398875515|ref|ZP_10630687.1| poly(A) polymerase [Pseudomonas sp. GM67]
gi|398886155|ref|ZP_10641044.1| poly(A) polymerase [Pseudomonas sp. GM60]
gi|398190527|gb|EJM77749.1| poly(A) polymerase [Pseudomonas sp. GM60]
gi|398207121|gb|EJM93876.1| poly(A) polymerase [Pseudomonas sp. GM67]
Length = 466
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 127/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQNAGYQAYLVGGCVRDMMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 105 IHFGREIIEVATFR--ANHPQNDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 156
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 157 RDFTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLN 216
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + L+ + + +R+ E+ + G A + +L L L P A
Sbjct: 217 FGIEKHSALPIRDLAPMLREIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASA 276
Query: 303 AYLD 306
L+
Sbjct: 277 EALE 280
>gi|359795769|ref|ZP_09298382.1| poly(A) polymerase [Achromobacter arsenitoxydans SY8]
gi|359366088|gb|EHK67772.1| poly(A) polymerase [Achromobacter arsenitoxydans SY8]
Length = 456
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 138/254 (54%), Gaps = 12/254 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V ++L+ G++AY+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCEVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----VLLSQIPYGCDEIDLVRW 177
R+ IIGRRF + V +IE S+F A E +ET +L +G E D R
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPA--SEDQETDEHGRILRDNVFGSQEEDAKR- 146
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFT+N+L++DP ++ DY +G++DL+ ++R + + ED R+LR +R
Sbjct: 147 -----RDFTMNALYYDPHNEEVIDYHDGVADLKKRQIRIIGDPVKRYREDPVRMLRAVRF 201
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
AA+L + + +++ IE + SR+ E+ +L+ G A + LR L K L
Sbjct: 202 AAKLNGAIDPATRQPIQTMADLIENVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHKGL 261
Query: 298 LPFHAAYLDQQAGK 311
LP L+Q G+
Sbjct: 262 LPLLDVVLEQPGGE 275
>gi|88858370|ref|ZP_01133012.1| poly(A) polymerase I [Pseudoalteromonas tunicata D2]
gi|88819987|gb|EAR29800.1| poly(A) polymerase I [Pseudoalteromonas tunicata D2]
Length = 457
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 139/272 (51%), Gaps = 23/272 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL LK G+ AYLVGGC+RD+LL PKDFDV+T A +Q++R F IIGRRF +
Sbjct: 36 VLYRLKDGGYDAYLVGGCIRDVLLGVTPKDFDVVTNATPEQVKRLFRNCRIIGRRFRLAH 95
Query: 135 VHIKGSVIEVSSFETVAKHGEGK-----------ETVLLSQIPYGCDEIDLVRWRNSIHR 183
+ +IEV+ T+ H EG E LL +G + D R R
Sbjct: 96 IVFGREIIEVA---TMRGHHEGSEDKNPISQSSTEGQLLRDNVFGSIDEDAER------R 146
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DF+IN+L++ I+DYANG+ ++ ++ + + ED R+LR +R A +L +
Sbjct: 147 DFSINALYYSINDYSIHDYANGMDAIKHRRIELIGHPETRYREDPVRMLRAIRFATKLDM 206
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
+ D + ++ L+ + + +R+ E+ + G AE + LR+Y L K L P
Sbjct: 207 TIAPDTEKPIYELADLLSNIPAARLFEEVLKLFLNGKAEQNFVALRQYGLFKQLFPALDL 266
Query: 304 YLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
++Q T E ++ ++F N D ++ D+
Sbjct: 267 IIEQSK---TGEELKLITQMFINTDTRINADK 295
>gi|410939984|ref|ZP_11371806.1| poly(A) polymerase [Leptospira noguchii str. 2006001870]
gi|410784922|gb|EKR73891.1| poly(A) polymerase [Leptospira noguchii str. 2006001870]
Length = 487
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 129/241 (53%), Gaps = 11/241 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I + MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 IRKNMIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTIN+L++D + I DY G D+R LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINALYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A LGL+ K A+ + +E+ SR++ E N + + + +L+IL
Sbjct: 208 AEILGLNIEKTTAKAIRKHKAELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGILEIL 267
Query: 298 L 298
Sbjct: 268 F 268
>gi|386388632|ref|ZP_10073489.1| polynucleotide adenylyltransferase [Haemophilus
paraphrohaemolyticus HK411]
gi|385697483|gb|EIG27906.1| polynucleotide adenylyltransferase [Haemophilus
paraphrohaemolyticus HK411]
Length = 477
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 143/270 (52%), Gaps = 18/270 (6%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T+ + GI+ P+ + +++ L G++AY+VGGCVRDLLL + PKDFD+ T A +
Sbjct: 34 TIHAGQHGISPKDFPKNALAIVEKLHRAGYEAYIVGGCVRDLLLGKKPKDFDISTNARPE 93
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEID 173
++++ F R ++GRRF + + + EV++F G E +I DE
Sbjct: 94 EVQKIFGRQCRLVGRRFRLAHIMYGREIFEVATFRA------GHENHTNDKISKVSDEGM 147
Query: 174 LVR-------WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
L+R + ++ RDF++N+ ++DP N IYD+ NG+ DLR KLR L + E
Sbjct: 148 LLRDNVYGTLFEDAGRRDFSVNAFYYDPRHNLIYDFFNGVEDLRAGKLRLLGEPTQRYQE 207
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K+ + + +L+ + + +R+ E +L G +
Sbjct: 208 DPVRMLRAVRFMAKLDMFLDKETEAPIKTLAPLLGNIPTARLFDESLKLLQSGTGFKTYE 267
Query: 287 LLRRYNLLK----ILLPFHAAYLDQQAGKI 312
LLR Y+L + +L PF + D A ++
Sbjct: 268 LLREYHLFEQLFPVLTPFFTDHQDSNAERM 297
>gi|416024933|ref|ZP_11568843.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race 4]
gi|320330254|gb|EFW86239.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 467
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 128/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T A +Q+R +F + IIGRRF +
Sbjct: 46 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATNATPEQVRAEFRNARIIGRRFKLVH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 106 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 157
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 158 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 217
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + SL+ + + +R+ E+ + G A + +L L + L P +
Sbjct: 218 FGIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASS 277
Query: 303 AYLD 306
L+
Sbjct: 278 KALE 281
>gi|336451199|ref|ZP_08621644.1| poly(A) polymerase [Idiomarina sp. A28L]
gi|336282044|gb|EGN75290.1| poly(A) polymerase [Idiomarina sp. A28L]
Length = 467
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/261 (36%), Positives = 137/261 (52%), Gaps = 21/261 (8%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF AYLVGGCVRDLLL PKDFDV T A+ +QI+ F
Sbjct: 43 ISRQDISENALKVLYRLNKGGFDAYLVGGCVRDLLLGVTPKDFDVATNASPEQIKSLFRN 102
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF------ETVAKHG---------EGKETVLLSQIPY 167
+IGRRF + + VIEV++F ++ AKHG + E +LL Y
Sbjct: 103 CRLIGRRFRLAHIVYGRDVIEVATFRGHHAEDSNAKHGADEKKHISKQDDEGMLLRDNVY 162
Query: 168 GCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
G + D R RDFT+N+L++ IYD+ANGI+DL LR + + ED
Sbjct: 163 GTIDEDAQR------RDFTVNALYYSIADFAIYDFANGIADLEQGLLRLIGDPEQRYRED 216
Query: 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
R+LR +R A +LGL K+ + + SL++ ++ + +R+ E + A+++
Sbjct: 217 PVRMLRAVRFATKLGLRLEKETEAPIRSLANLLDNIPPARLFEEFLKLFLNQKAQANFER 276
Query: 288 LRRYNLLKILLPFHAAYLDQQ 308
L NL + L P + L QQ
Sbjct: 277 LTELNLFQYLFPVLKSVLKQQ 297
>gi|209696020|ref|YP_002263950.1| poly(A) polymerase (plasmid copy number protein) [Aliivibrio
salmonicida LFI1238]
gi|208009973|emb|CAQ80291.1| poly(A) polymerase (plasmid copy number protein) [Aliivibrio
salmonicida LFI1238]
Length = 441
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 136/262 (51%), Gaps = 15/262 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R + + VL L + G+ AYLVGG VRD++L + PKDFD+ T A +QI++ F
Sbjct: 13 ISRKDLSDNALKVLYRLSNAGYDAYLVGGGVRDIILGQEPKDFDIATNATPEQIKKLFRN 72
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + VIEV++F K E KE +LL YG E D
Sbjct: 73 CRLIGRRFRLAHILFGRDVIEVATFRGHHKEEESEKKNISSQSKEGMLLRDNVYGTVEED 132
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTIN+++++ I+DYANGI DL+ +R + + ED R+LR
Sbjct: 133 AQR------RDFTINAMYYNIADYSIHDYANGIEDLKNGVVRLIGDPETRYREDPVRMLR 186
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+L ++ C M LS + + +R+ E +L G ++ +LR++NL
Sbjct: 187 AVRFAAKLDMTICNKTAEPMVELSPLLRDIPAARLFEESLKLLQAGKGLNTYLMLRKFNL 246
Query: 294 LKILLPFHAAYLDQQAGKITAE 315
+ L P +L ++ T +
Sbjct: 247 FQQLFPALTPFLTKEGNSQTEQ 268
>gi|237746883|ref|ZP_04577363.1| poly(A) polymerase [Oxalobacter formigenes HOxBLS]
gi|229378234|gb|EEO28325.1| poly(A) polymerase [Oxalobacter formigenes HOxBLS]
Length = 461
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/255 (35%), Positives = 138/255 (54%), Gaps = 8/255 (3%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T++S GI ++ + V++IL + G++A++VGG VRDLLL PKDFDV T A +
Sbjct: 24 TLNSAQHGIDPRLVSNSAIRVVRILHNAGYKAFIVGGAVRDLLLGLKPKDFDVATDATPE 83
Query: 115 QIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--LLSQIPYGCDEI 172
Q++R F R+ +IGRRF I V + +IEV++F + K+ LL +G E
Sbjct: 84 QVKRLFRRAFVIGRRFQIVHVLLGQELIEVTTFRGSSTKPALKDDAGRLLRDNSFGTQEE 143
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++P + DY G++DLR L+ + + ED R+L
Sbjct: 144 DAAR------RDFTINAMYYNPANQLLLDYHGGMNDLRNRTLKIIGDPEQRYREDPVRML 197
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R AA+LG S + SL+ I + +R+ E+ +L G A S + LR
Sbjct: 198 RIVRFAAKLGFSIDPATRAPIASLAPLINNVPSARLFDEMLKLLMSGHAMSCLKELRTRG 257
Query: 293 LLKILLPFHAAYLDQ 307
L K LLP L+Q
Sbjct: 258 LHKGLLPLLDVALEQ 272
>gi|71733402|ref|YP_273137.1| poly(A) polymerase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71553955|gb|AAZ33166.1| poly(A) polymerase [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 491
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 126/237 (53%), Gaps = 20/237 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 70 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 129
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 130 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 181
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 182 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 241
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
K + SL+ + + +R+ E+ + G A + +L L + L P
Sbjct: 242 FGIEKHSAQPIRSLAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 298
>gi|384082720|ref|ZP_09993895.1| poly(A) polymerase [gamma proteobacterium HIMB30]
Length = 442
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 137/250 (54%), Gaps = 10/250 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI + S V++IL+ G++AYLVGG +RDLLL + PKDFDV T+A ++++ F
Sbjct: 26 GINDRDLSHGSLRVIEILQHAGYEAYLVGGGIRDLLLGKHPKDFDVATSAKPVEVQKLFR 85
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----VLLSQIPYGCDEIDLVRW 177
++ IIGRRF I V + +IEV++F A++ ++ +L+ +G E D VR
Sbjct: 86 KARIIGRRFQIVHVRMGPEIIEVTTFRGSAENSHLQQANASGMLVRDNVFGSVEDDAVR- 144
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFT+N+L++DP +++ D+ G DL +R + + ED R+LR +R
Sbjct: 145 -----RDFTMNALYYDPSNHEVLDFVGGYDDLEDGMIRIIGDPETRYREDPVRMLRAVRF 199
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
+LGL D + L+ + + SR+ E+ +L G +++ L +Y+LL+ L
Sbjct: 200 VGKLGLQLEPDTAEPIRRLAPLLRDVSPSRLFDEILKLLQAGHGQATFPELVKYDLLRPL 259
Query: 298 LPFHAAYLDQ 307
P A L +
Sbjct: 260 FPQTEALLSE 269
>gi|344344445|ref|ZP_08775307.1| poly(A) polymerase [Marichromatium purpuratum 984]
gi|343803852|gb|EGV21756.1| poly(A) polymerase [Marichromatium purpuratum 984]
Length = 458
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 132/244 (54%), Gaps = 12/244 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+RA I + VL LK + FQA+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 26 GISRANISANALKVLYRLKQENFQAHLVGGGVRDLLLGHEPKDFDVATDATPEQVRQVFR 85
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHGEG--KETVLLSQIPYGCDEIDLV 175
+IGRRF + VH +IEV++F E+ A+ GE + +++ YG D +
Sbjct: 86 NCRLIGRRFRLAHVHFGRDIIEVATFRGNGESEAEEGERCVENGMIVRDNAYGTIAEDAL 145
Query: 176 RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGL 235
R RDFTIN+L+++ + DYA+G++DLR KLR + + ED R+LR +
Sbjct: 146 R------RDFTINALYYNIQDFSLIDYADGLADLRAGKLRLIGDPEQRYREDPVRMLRAV 199
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R A +LG S + + + L ++ + +R+ EL + G LR Y L
Sbjct: 200 RFACKLGFSIEEATERPLFELGHLLDGVPAARLFDELIKLFHAGYGLDVFEKLRHYGLFA 259
Query: 296 ILLP 299
+L P
Sbjct: 260 LLFP 263
>gi|269214303|ref|ZP_05986289.2| poly(A) polymerase [Neisseria lactamica ATCC 23970]
gi|269210162|gb|EEZ76617.1| poly(A) polymerase [Neisseria lactamica ATCC 23970]
Length = 469
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 132/244 (54%), Gaps = 13/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 62 VIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 121
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V IEV++F AK + ++ YG D +R RDFT N+L++DP
Sbjct: 122 VMNGAETIEVTTFRGGAKVQQNARGRIMKDNTYGSIGEDAMR------RDFTCNALYYDP 175
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NG++D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 176 ETEEILDFHNGVADIAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFKLSEETAA--- 232
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA-AYLDQQAG 310
++ SI RL +R+ E+ +L G A + + +LRR++ I A D AG
Sbjct: 233 PIAESICRLKHEPVARLFDEIMKLLFSGHAAACLQVLRRFDCTGIHPLLDALGVSDGIAG 292
Query: 311 KITA 314
K+TA
Sbjct: 293 KMTA 296
>gi|431804494|ref|YP_007231397.1| poly(A) polymerase [Pseudomonas putida HB3267]
gi|430795259|gb|AGA75454.1| poly(A) polymerase [Pseudomonas putida HB3267]
Length = 462
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 127/245 (51%), Gaps = 19/245 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRDL+L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H E + +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--AHHSEDDQGDSHRSSHNASGRILRDNVYGTLEEDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L++DP +I DYANG+ D+R LR + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYYDPVSERILDYANGVHDIRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E + G +L L + L P +
Sbjct: 217 GIEKHTVQPIRELAPLLREIPPARLFEESLKLFLSGQGAIVFEMLVDLQLFEPLFPASSH 276
Query: 304 YLDQQ 308
LD++
Sbjct: 277 ALDER 281
>gi|452746540|ref|ZP_21946358.1| poly(A) polymerase [Pseudomonas stutzeri NF13]
gi|452009584|gb|EME01799.1| poly(A) polymerase [Pseudomonas stutzeri NF13]
Length = 464
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 140/264 (53%), Gaps = 20/264 (7%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+ SR + R I + + V++ L+ G++AY+VGGCVRDLLL+ PKD+DV T+A +Q
Sbjct: 26 LSSRQHSLNRNEISRYAVSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQ 85
Query: 116 IRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE------------GKETVLLS 163
+R +F + +IGRRF + VH +IEV++F A H E + +L
Sbjct: 86 VRAEFRNARVIGRRFKLVHVHFGREIIEVATFR--ANHPEEDDDDASHLASRNESGRILR 143
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D R RDFTIN+L++DP +I D+ +G+ D+R +R +
Sbjct: 144 DNVYGTLEDDAQR------RDFTINALYYDPATERILDHTHGVHDIRNRLVRLIGDPEQR 197
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R AA+L + + L+ ++ + +R+ E+ + G AE
Sbjct: 198 YQEDPVRMLRAVRFAAKLDFEIERHSAEPIVDLAELLDGIPSARLFDEVLKLFLGGKAER 257
Query: 284 SICLLRRYNLLKILLPFHAAYLDQ 307
+ LL Y+L L P AA L++
Sbjct: 258 TFELLLEYDLFAPLFPASAAALER 281
>gi|45600186|gb|AAS69672.1| polynucleotide adenyltransferase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 450
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 120/215 (55%), Gaps = 11/215 (5%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEII 126
MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+ II
Sbjct: 1 MIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNNCRII 60
Query: 127 GRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRWRNSI 181
GRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 61 GRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR----- 115
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFTINSL++D + I DY G D+R LR + +SF ED R+LR ++ A L
Sbjct: 116 -RDFTINSLYYDVRNDSIIDYVGGFEDIRNKVLRVIGDPDISFREDPVRMLRAVKFAEIL 174
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
GL+ K A+ + +E+ SR++ E N +
Sbjct: 175 GLNIEKTTAKAIRKHKTELEKASSSRMLEEYNKIF 209
>gi|417840842|ref|ZP_12486950.1| Putative polyA polymerase [Haemophilus haemolyticus M19501]
gi|341950653|gb|EGT77240.1| Putative polyA polymerase [Haemophilus haemolyticus M19501]
Length = 452
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 133/247 (53%), Gaps = 18/247 (7%)
Query: 72 SWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRF 130
+ V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF
Sbjct: 36 ALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRF 95
Query: 131 PICRVHIKGSVIEVSSFETVAKHGEG---------KETVLLSQIPYGCDEIDLVRWRNSI 181
+ + +IEV++F A H + E +LL YG E D R
Sbjct: 96 RLAHIMFGRDIIEVATFR--ANHSDALNENQAKQSNEGMLLRDNVYGTIEQDAER----- 148
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+L+++P N + DY +GI DL+ KLR + + ED R+LR +R A+L
Sbjct: 149 -RDFTVNALYYNPQDNTLRDYFDGIQDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKL 207
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
+ K + + L+ ++ + +R+ E +L G + LLR+Y L + L P
Sbjct: 208 DMFLEKPSEQPIRELTPLLKNIPPARLFDESLKLLQAGQGVKTYRLLRQYGLFEQLFPAL 267
Query: 302 AAYLDQQ 308
+ Y ++
Sbjct: 268 SPYFTEK 274
>gi|373467553|ref|ZP_09558847.1| polynucleotide adenylyltransferase [Haemophilus sp. oral taxon 851
str. F0397]
gi|371758274|gb|EHO47047.1| polynucleotide adenylyltransferase [Haemophilus sp. oral taxon 851
str. F0397]
Length = 480
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 139/263 (52%), Gaps = 18/263 (6%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+ + GI+ + + V++ L+ QGF+AY+VGGC+RDLLL + PKD DV T A +Q
Sbjct: 48 IKAAQFGISPRDFSRNALTVVEKLQRQGFEAYIVGGCIRDLLLGKKPKDSDVATNARPEQ 107
Query: 116 IRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQI 165
I+ F R ++GRRF + + +IEV++F A H + + E +LL
Sbjct: 108 IQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDN 165
Query: 166 PYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFT 225
YG E D R RDFT+N+L+++P N + DY GI DL+ KLR + +
Sbjct: 166 VYGTIEQDAER------RDFTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQ 219
Query: 226 EDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285
ED R+LR +R A+L + K + + L+ ++ + +R+ E +L G +
Sbjct: 220 EDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQAGQGVKTY 279
Query: 286 CLLRRYNLLKILLPFHAAYLDQQ 308
LLR+Y L + L P ++Y ++
Sbjct: 280 RLLRQYGLFEQLFPALSSYFTEK 302
>gi|422336238|ref|ZP_16417211.1| poly(A) polymerase [Aggregatibacter aphrophilus F0387]
gi|353346424|gb|EHB90709.1| poly(A) polymerase [Aggregatibacter aphrophilus F0387]
Length = 421
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 136/251 (54%), Gaps = 18/251 (7%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EI 125
MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F R +
Sbjct: 1 MINRNALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAIFQRQCRL 60
Query: 126 IGRRFPICRVHIKGSVIEVSSFETVAKHGEG---------KETVLLSQIPYGCDEIDLVR 176
+GRRF + + +IEV++F A H E +E +LL YG E D R
Sbjct: 61 VGRRFRLAHIMFGREIIEVATFR--ANHAESHNEKHAKQSEEGMLLRDNVYGTLEQDAER 118
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDF++N+L+++P N + D+ NGI DL+ KLR + + ED R+LR +R
Sbjct: 119 ------RDFSVNALYYNPQDNTLKDFFNGIEDLKNGKLRLIGDPVTRYQEDPVRMLRSIR 172
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A+L + K + + L+ ++ + +R+ E +L G + LLR+Y L +
Sbjct: 173 FMAKLDMFLDKPSEMPIKELAHLLKNIPPARLFEESLKLLQAGYGVKTYWLLRQYGLFEQ 232
Query: 297 LLPFHAAYLDQ 307
L P + Y +
Sbjct: 233 LFPLLSKYFTE 243
>gi|251792689|ref|YP_003007415.1| poly(A) polymerase [Aggregatibacter aphrophilus NJ8700]
gi|247534082|gb|ACS97328.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Aggregatibacter aphrophilus NJ8700]
Length = 421
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 136/251 (54%), Gaps = 18/251 (7%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EI 125
MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F R +
Sbjct: 1 MINRNALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQAIFQRQCRL 60
Query: 126 IGRRFPICRVHIKGSVIEVSSFETVAKHGEG---------KETVLLSQIPYGCDEIDLVR 176
+GRRF + + +IEV++F A H E +E +LL YG E D R
Sbjct: 61 VGRRFRLAHIMFGREIIEVATFR--ANHAESHNEKHAKQSEEGMLLRDNVYGTLEQDAER 118
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDF++N+L+++P N + D+ NGI DL+ KLR + + ED R+LR +R
Sbjct: 119 ------RDFSVNALYYNPQDNTLKDFFNGIEDLKNGKLRLIGDPVTRYQEDPVRMLRSIR 172
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A+L + K + + L+ ++ + +R+ E +L G + LLR+Y L +
Sbjct: 173 FMAKLDMFLDKPSEMPIKELAHLLKNIPPARLFEESLKLLQAGYGVKTYWLLRQYGLFEQ 232
Query: 297 LLPFHAAYLDQ 307
L P + Y +
Sbjct: 233 LFPLLSKYFTE 243
>gi|271501655|ref|YP_003334681.1| poly(A) polymerase [Dickeya dadantii Ech586]
gi|270345210|gb|ACZ77975.1| poly(A) polymerase [Dickeya dadantii Ech586]
Length = 467
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 168/346 (48%), Gaps = 30/346 (8%)
Query: 35 MCREMCSDSFNQEVDVSNWK---TVDSRNL-GITRAMIPQPSWVVLKILKSQGFQAYLVG 90
CR++ + N+ V V N TV R+ I+R+ I + + VL L G++AYLVG
Sbjct: 8 FCRKVLNRE-NEPVSVDNPPQTMTVIPRDQHAISRSDISENALKVLYRLSKAGYEAYLVG 66
Query: 91 GCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF--- 147
G VRDLLL + PKDFD+ T A +Q+R+ F ++GRRF + V VIEV++F
Sbjct: 67 GGVRDLLLGKKPKDFDITTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEVIEVATFRGH 126
Query: 148 -------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
ET +G +LL +G E D R RDFTINSL++ +
Sbjct: 127 HEQHQEQETKNAAQQGHNGMLLRDNIFGTIEEDAQR------RDFTINSLYYSIADFTVR 180
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY NG++DLR +R + + ED R+LR +R AA+LG+ + + L+S +
Sbjct: 181 DYTNGLNDLRQGLIRLIGDPETRYREDPVRMLRAVRFAAKLGMRISAETAEPIPRLASLL 240
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMML 320
+ +R+ E +L G + LL Y L + L P + Y G+ T E M+
Sbjct: 241 HDIPPARLFEESLKLLQAGHGYPTYQLLCEYQLFQPLFPLISRYFTAN-GESTMER--MI 297
Query: 321 MRLFFNLDKLVSCD---RPA---DYTLWVGLLSFHQALVSDPQDAF 360
+++ N D+ + D PA LW L+ Q L + A+
Sbjct: 298 VQVLKNTDQRIQNDMRVNPAFLFSAMLWYPLVEHAQKLTQESGLAY 343
>gi|421563059|ref|ZP_16008881.1| poly(A) polymerase [Neisseria meningitidis NM2795]
gi|421906626|ref|ZP_16336519.1| poly(A) polymerase [Neisseria meningitidis alpha704]
gi|393292374|emb|CCI72460.1| poly(A) polymerase [Neisseria meningitidis alpha704]
gi|402341766|gb|EJU76939.1| poly(A) polymerase [Neisseria meningitidis NM2795]
Length = 453
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 129/241 (53%), Gaps = 8/241 (3%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++ +
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETTAPIA 217
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQAGKI 312
S++ +R+ E+ +L G A + L +++ + P A D AGK+
Sbjct: 218 ESICSLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIAGKM 277
Query: 313 T 313
T
Sbjct: 278 T 278
>gi|302185887|ref|ZP_07262560.1| poly(A) polymerase [Pseudomonas syringae pv. syringae 642]
gi|422631705|ref|ZP_16696887.1| poly(A) polymerase [Pseudomonas syringae pv. pisi str. 1704B]
gi|422641975|ref|ZP_16705396.1| poly(A) polymerase [Pseudomonas syringae Cit 7]
gi|422666860|ref|ZP_16726726.1| poly(A) polymerase [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|424066042|ref|ZP_17803515.1| poly(A) polymerase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424070690|ref|ZP_17808123.1| poly(A) polymerase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440721247|ref|ZP_20901647.1| poly(A) polymerase [Pseudomonas syringae BRIP34876]
gi|440728585|ref|ZP_20908798.1| poly(A) polymerase [Pseudomonas syringae BRIP34881]
gi|440741740|ref|ZP_20921073.1| poly(A) polymerase [Pseudomonas syringae BRIP39023]
gi|443641536|ref|ZP_21125386.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B64]
gi|330941558|gb|EGH44344.1| poly(A) polymerase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330954360|gb|EGH54620.1| poly(A) polymerase [Pseudomonas syringae Cit 7]
gi|330977389|gb|EGH77338.1| poly(A) polymerase [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|408000107|gb|EKG40472.1| poly(A) polymerase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|408002716|gb|EKG42954.1| poly(A) polymerase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|440361374|gb|ELP98605.1| poly(A) polymerase [Pseudomonas syringae BRIP34881]
gi|440363869|gb|ELQ01023.1| poly(A) polymerase [Pseudomonas syringae BRIP34876]
gi|440378598|gb|ELQ15216.1| poly(A) polymerase [Pseudomonas syringae BRIP39023]
gi|443281553|gb|ELS40558.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B64]
Length = 467
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 46 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 106 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 157
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 158 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 217
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + +L+ + + +R+ E+ + G A + +L L + L P +
Sbjct: 218 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASS 277
Query: 303 AYLD 306
L+
Sbjct: 278 KALE 281
>gi|406987425|gb|EKE07779.1| hypothetical protein ACD_17C00519G0002 [uncultured bacterium]
Length = 418
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 129/234 (55%), Gaps = 9/234 (3%)
Query: 72 SWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFP 131
++ V++ LK G AYLVGG VRDLLL + PKDFDV T+A +I+ F + +IGRRF
Sbjct: 22 AFYVIQKLKKAGHTAYLVGGGVRDLLLNKSPKDFDVSTSAKPDEIKLLFRNAILIGRRFR 81
Query: 132 ICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLF 191
+ + VIEVS+F + + G +++ +G +E D++R RDFTIN LF
Sbjct: 82 LAHIRFGKKVIEVSTFRSGSIEEAG---LIVRDNEWGNEEQDVLR------RDFTINGLF 132
Query: 192 FDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDT 251
+DP K+ DY +G D+ LR + + FT+D R++R ++ AR K +
Sbjct: 133 YDPENQKVIDYVDGYPDIEKGILRAIGQPEVRFTQDPVRMIRLIKFCARFNFEIHKPTFS 192
Query: 252 AMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL 305
A+ + I + +RI EL ML GA++S LL Y LLK L P + YL
Sbjct: 193 ALLNCKGEILKSSSARIFEELLRMLESGASQSFFHLLNEYGLLKALSPTLSHYL 246
>gi|120553603|ref|YP_957954.1| poly(A) polymerase [Marinobacter aquaeolei VT8]
gi|120323452|gb|ABM17767.1| poly(A) polymerase [Marinobacter aquaeolei VT8]
Length = 455
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 149/295 (50%), Gaps = 23/295 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R+MI +P+ VL L G++AYLVGG VRD+LL PKDFD+ T A +++ F
Sbjct: 36 VSRSMISEPAKKVLHRLNKSGYEAYLVGGGVRDILLGGQPKDFDIATNATPEEVHDLFRN 95
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAK----------HGEGKETVLLSQIPYGCDEI 172
S +IGRRF I V +IEV++F A+ H + +LL YG E
Sbjct: 96 SRLIGRRFRIVHVVFGREIIEVTTFRGNARDTDDDLADDEHKTSEHGLLLRDNVYGNQEE 155
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +R RDFTIN+L++ I D+ANG+ DL+ ++R + + ED R+L
Sbjct: 156 DALR------RDFTINALYYCIRDFSIIDFANGVQDLKNRQIRLIGDPETRYREDPVRML 209
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R AA+L + + + L+ + + +R+ E+ + S G E++ LL+ Y
Sbjct: 210 RAIRFAAKLDFEIEPETEAPIRELAPLLAHIPPARLFDEVLKLFSAGHGEATYRLLQDYG 269
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP-ADYTLWVGLL 346
LL L P A L + E ++++ N D ++ + Y L+ +L
Sbjct: 270 LLAPLFPETARAL------VAGEPDELILQALRNTDARIAQGKSVTPYFLFAAML 318
>gi|325276181|ref|ZP_08141985.1| poly(A) polymerase [Pseudomonas sp. TJI-51]
gi|324098690|gb|EGB96732.1| poly(A) polymerase [Pseudomonas sp. TJI-51]
Length = 462
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 128/245 (52%), Gaps = 19/245 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRDL+L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQAAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H E + +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--APHTEDDQNDSHRSSHNASGRILRDNVYGTLEEDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L++DP +I DYANG+ D+R LR + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYYDPVSERILDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E + G + +L L + L P A
Sbjct: 217 GIEKHTFKPIRELAPLLREIPPARLFEESLKLFLSGQGAIAFEMLVDLELFEPLFPASAH 276
Query: 304 YLDQQ 308
L+++
Sbjct: 277 ALEER 281
>gi|77461030|ref|YP_350537.1| poly(A) polymerase [Pseudomonas fluorescens Pf0-1]
gi|398981005|ref|ZP_10689237.1| poly(A) polymerase [Pseudomonas sp. GM25]
gi|77385033|gb|ABA76546.1| putative polynucleotide adenylyltransferase [Pseudomonas
fluorescens Pf0-1]
gi|398134036|gb|EJM23212.1| poly(A) polymerase [Pseudomonas sp. GM25]
Length = 466
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 123/243 (50%), Gaps = 16/243 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQGAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETV----------LLSQIPYGCDEIDLVRWRNSIHRD 184
+H +IEV++F E E +L YG E D R RD
Sbjct: 105 IHFGREIIEVATFRANHPQNEDDEDSNQSSRNESGRILRDNVYGTLEEDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFG 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + L+ + + +R+ E+ + G + +L L L P A
Sbjct: 219 IEKHTVQPIRELAPMLREIPSARLFEEVLKLFLSGHGAITFEMLVDLQLFAPLFPASADA 278
Query: 305 LDQ 307
L+
Sbjct: 279 LEH 281
>gi|330443816|ref|YP_004376802.1| poly A polymerase [Chlamydophila pecorum E58]
gi|328806926|gb|AEB41099.1| poly A polymerase [Chlamydophila pecorum E58]
Length = 414
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 161/310 (51%), Gaps = 37/310 (11%)
Query: 69 PQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGR 128
PQ + V+K L+ G+ AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+
Sbjct: 29 PQ-ALSVVKALRKAGYTAYIVGGCIRDLLLGTTPKDFDISTSAKPEEIKALFKNCILVGK 87
Query: 129 RFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTI 187
RF + + +IEVS+F + G+ + L+++ +G E D++R RDFTI
Sbjct: 88 RFRLAHIRFANQIIEVSTFRS----GDTETDALITKDNLWGTPEEDVLR------RDFTI 137
Query: 188 NSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCK 247
N LF+DP I DY G+SDL LRT+ ++ F +D R+LR L+I +R +
Sbjct: 138 NGLFYDPAEEAIIDYTGGMSDLSNHYLRTIGDPFMRFKQDPVRMLRLLKILSRFQFTVAP 197
Query: 248 DIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQ 307
A+ + + + ++R+ EL ML+ G + LL+ +LL+IL P Y+D+
Sbjct: 198 QTQEALLACHRELTKSSQARVFEELIKMLNSGVSARFFRLLKENHLLEILFP----YMDK 253
Query: 308 --QAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVF 365
+ K+ E + + DY + +++V D F V+++
Sbjct: 254 AFRLNKVLEEQTYQYLEVL-------------DYKIQ------SKSMVYDRHQVFAVFLY 294
Query: 366 ASVLYHGKWK 375
+V ++ ++K
Sbjct: 295 PTVNFNVRYK 304
>gi|82702011|ref|YP_411577.1| poly(A) polymerase [Nitrosospira multiformis ATCC 25196]
gi|82410076|gb|ABB74185.1| poly(A) polymerase [Nitrosospira multiformis ATCC 25196]
Length = 471
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 144/307 (46%), Gaps = 31/307 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R I + V L+ G+ A++VGG RDL+L PKDFDV T A +++R F
Sbjct: 37 GIRRDHISSGALKVTSGLQEAGYSAFIVGGAARDLVLGLEPKDFDVATNATPEEVRAVFR 96
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF--------------ETVAKHGEGKETVLLSQIPY 167
RS IIGRRF + V +EVS+F E +HG LL +
Sbjct: 97 RSRIIGRRFRLVHVMWGAETVEVSTFRGGPSGETGGLGADEHADEHGR-----LLRDNVF 151
Query: 168 GCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
G E D R RDFT+N+LFFDP +I+DY NG DL+ +LR + + ED
Sbjct: 152 GSQEEDARR------RDFTVNALFFDPVHEEIWDYLNGYEDLKARRLRIIGDPVRRYRED 205
Query: 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
R+LR +R+ A+LG+ D + L+ + + SR+ E+ +L G A + +
Sbjct: 206 PVRMLRVVRLGAKLGMEIDPDTAAPISELAPLLLHVPPSRLFDEMLKLLLSGHALACVTD 265
Query: 288 LRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLS 347
L++ L LLP +Q GK + N D+ V ++P L
Sbjct: 266 LQKRGLHHGLLPMLDVIREQPLGK------RFITLALKNTDERVRQEKPVSPGFLFAALL 319
Query: 348 FHQALVS 354
+H+ L S
Sbjct: 320 WHEVLAS 326
>gi|345869948|ref|ZP_08821903.1| poly(A) polymerase [Thiorhodococcus drewsii AZ1]
gi|343922335|gb|EGV33037.1| poly(A) polymerase [Thiorhodococcus drewsii AZ1]
Length = 437
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 132/251 (52%), Gaps = 11/251 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+RA I + + VL L+ + FQA+LVGG VRDLLL PKDFD+ T A +Q+R+ F
Sbjct: 17 ISRANISEHALKVLYRLRQENFQAHLVGGGVRDLLLGHEPKDFDIATDATPEQVRQVFRN 76
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE-----TVLLSQIPYGCDEIDLVRW 177
+IGRRF + VH +IEV++F + G+ + +++ YG E D +R
Sbjct: 77 CRLIGRRFRLAHVHFGRDIIEVATFRGSGEEGDDTDRRLENGMIVRDNSYGSIEEDALR- 135
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTIN+L++D + DYA G+ DLR ++R + + ED R+LR +R
Sbjct: 136 -----RDFTINALYYDIADFSLIDYAGGLDDLRAGRVRFIGDPDQRYREDPVRMLRAVRF 190
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A +LG + + + +L + + +R+ EL +L G + LR Y L L
Sbjct: 191 ACKLGFNIESATEAPLFTLGHLLHDIPAARLFDELIKLLHSGYGLAVFEKLRHYGLFGHL 250
Query: 298 LPFHAAYLDQQ 308
P A L QQ
Sbjct: 251 FPATEACLTQQ 261
>gi|422660491|ref|ZP_16722902.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|331019095|gb|EGH99151.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str.
M302278]
Length = 467
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 46 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 106 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 157
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 158 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 217
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + +L+ + + +R+ E+ + G A + +L L + L P +
Sbjct: 218 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFPASS 277
Query: 303 AYLD 306
L+
Sbjct: 278 KALE 281
>gi|422647265|ref|ZP_16710395.1| poly(A) polymerase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330960809|gb|EGH61069.1| poly(A) polymerase [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 467
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 46 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 106 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 157
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 158 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 217
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + +L+ + + +R+ E+ + G A + +L L + L P +
Sbjct: 218 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFPASS 277
Query: 303 AYLD 306
L+
Sbjct: 278 KALE 281
>gi|325971159|ref|YP_004247350.1| poly(A) polymerase [Sphaerochaeta globus str. Buddy]
gi|324026397|gb|ADY13156.1| poly(A) polymerase [Sphaerochaeta globus str. Buddy]
Length = 422
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 131/232 (56%), Gaps = 13/232 (5%)
Query: 73 WVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPI 132
W + K L++ G +AYLVGG VRD++L +PKDFD+ T+A+ +QI+R F + IIG+RF +
Sbjct: 38 WAIKK-LQASGAEAYLVGGAVRDMMLGTIPKDFDIATSASPRQIQRLFWNARIIGKRFKL 96
Query: 133 CRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
+ K V+EVS+F + + +G V +G + D R RDF+INS ++
Sbjct: 97 VHLVFKDKVLEVSTFRSGEEAMDGNNNV------FGSIDQDAKR------RDFSINSFYY 144
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
DP ++ D+ + + D + K+ ++I SF ED R++R ++ + G S + A
Sbjct: 145 DPSTGQLLDFNHAMEDFKKKKISSIIDLDESFKEDPVRMVRAIKYSVSTGFSLRWSVKMA 204
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
+ S+ + R+ SR+ E+N +L+ G + L+RY LL +LP + Y
Sbjct: 205 IRKYSNELSRVSTSRLTEEVNKILASGHSCEIFNELKRYKLLVFMLPAFSIY 256
>gi|313201844|ref|YP_004040502.1| poly(a) polymerase [Methylovorus sp. MP688]
gi|312441160|gb|ADQ85266.1| poly(A) polymerase [Methylovorus sp. MP688]
Length = 455
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 144/281 (51%), Gaps = 17/281 (6%)
Query: 79 LKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIK 138
L+ GF+A++VGG VRDLLL++ PKDFDV T A +Q+ R F RS IIGRRF + V
Sbjct: 56 LQKAGFEAFIVGGAVRDLLLKKRPKDFDVATNATPEQVNRVFRRSRIIGRRFRLVHVLFG 115
Query: 139 GSVIEVSSFETVAKHGEGKETV-----LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFD 193
+EVS+F + +G + +L +G E D +R RDFT N+L++D
Sbjct: 116 DETVEVSTFRGSHLNDDGDAKIADSGRILRDNVFGSQEDDALR------RDFTANALYYD 169
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P + D+ NG D++ LR + + ED R+LR +R++A+LGL K + +
Sbjct: 170 PSSEDVLDFHNGYEDIQAGILRMIGDPVTRYREDPVRMLRAIRLSAKLGLKLDKATEAPI 229
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKIT 313
L+ ++ + SR+ E+ + G A S+ LR++ L LLP L+Q G+
Sbjct: 230 PKLADELQEVPASRLFDEMLKLFLSGYAMESVKALRQHGLHHGLLPLLDVVLEQPMGE-- 287
Query: 314 AENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVS 354
+ N D+ V D+P + L +H+ L +
Sbjct: 288 ----RFVTLALKNTDERVLQDKPVSPSFLFATLLWHEVLTA 324
>gi|28868183|ref|NP_790802.1| poly(A) polymerase [Pseudomonas syringae pv. tomato str. DC3000]
gi|301384667|ref|ZP_07233085.1| poly(A) polymerase [Pseudomonas syringae pv. tomato Max13]
gi|302061944|ref|ZP_07253485.1| poly(A) polymerase [Pseudomonas syringae pv. tomato K40]
gi|302134196|ref|ZP_07260186.1| poly(A) polymerase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422296944|ref|ZP_16384593.1| poly(A) polymerase [Pseudomonas avellanae BPIC 631]
gi|422586839|ref|ZP_16661510.1| poly(A) polymerase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|422654168|ref|ZP_16716917.1| poly(A) polymerase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|28851420|gb|AAO54497.1| poly(A) polymerase [Pseudomonas syringae pv. tomato str. DC3000]
gi|330872464|gb|EGH06613.1| poly(A) polymerase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330967200|gb|EGH67460.1| poly(A) polymerase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|407991778|gb|EKG33553.1| poly(A) polymerase [Pseudomonas avellanae BPIC 631]
Length = 467
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 46 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 106 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 157
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 158 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 217
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + +L+ + + +R+ E+ + G A + +L L + L P +
Sbjct: 218 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFPASS 277
Query: 303 AYLD 306
L+
Sbjct: 278 KALE 281
>gi|416892981|ref|ZP_11924305.1| polyA polymerase [Aggregatibacter aphrophilus ATCC 33389]
gi|347814679|gb|EGY31328.1| polyA polymerase [Aggregatibacter aphrophilus ATCC 33389]
Length = 421
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 136/251 (54%), Gaps = 18/251 (7%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EI 125
MI + + V++ L+ QG++AY+VGGC+RDLLL + PKDFDV T A +QI+ F R +
Sbjct: 1 MINRNALTVVEKLQRQGYEAYVVGGCLRDLLLGKKPKDFDVATNARPEQIQEIFQRQCRL 60
Query: 126 IGRRFPICRVHIKGSVIEVSSFETVAKHGEG---------KETVLLSQIPYGCDEIDLVR 176
+GRRF + + +IEV++F A H E +E +LL YG E D R
Sbjct: 61 VGRRFRLAHIMFGREIIEVATFR--ANHAESHNEKHAKQSEEGMLLRDNVYGTLEQDAER 118
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDF++N+L+++P N + D+ NGI DL+ KLR + + ED R+LR +R
Sbjct: 119 ------RDFSVNALYYNPQDNTLKDFFNGIEDLKNGKLRLIGDPVTRYQEDPVRMLRSIR 172
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A+L + K + + L+ ++ + +R+ E +L G + LLR+Y L +
Sbjct: 173 FMAKLEMFLDKPSEMPIKELAHLLKNIPPARLFEESLKLLQAGYGVKTYRLLRQYGLFEQ 232
Query: 297 LLPFHAAYLDQ 307
L P + Y +
Sbjct: 233 LFPLLSKYFTE 243
>gi|66044085|ref|YP_233926.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B728a]
gi|63254792|gb|AAY35888.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B728a]
Length = 491
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 126/237 (53%), Gaps = 20/237 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 70 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 129
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 130 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 181
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 182 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 241
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
K + +L+ + + +R+ E+ + G A + +L L + L P
Sbjct: 242 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 298
>gi|339489424|ref|YP_004703952.1| poly(A) polymerase [Pseudomonas putida S16]
gi|338840267|gb|AEJ15072.1| poly(A) polymerase [Pseudomonas putida S16]
Length = 462
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 127/245 (51%), Gaps = 19/245 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S G+QAYLVGGCVRDL+L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQSAGYQAYLVGGCVRDLMLGIRPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H E + +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--AHHSEDDQGDSHRSSHNASGRILRDNVYGTLEEDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L++DP +I DYANG+ D+R LR + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYYDPVSERILDYANGVHDIRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E + G +L L + L P +
Sbjct: 217 GIEKHTVQPIRELAPLLREIPPARLFEESLKLFLSGQGAIVFEMLVDLQLFEPLFPASSH 276
Query: 304 YLDQQ 308
LD++
Sbjct: 277 ALDER 281
>gi|94311846|ref|YP_585056.1| poly(A) polymerase I polynucleotide adenylyltransferase
[Cupriavidus metallidurans CH34]
gi|93355698|gb|ABF09787.1| poly(A) polymerase I polynucleotide adenylyltransferase
[Cupriavidus metallidurans CH34]
Length = 529
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 147/316 (46%), Gaps = 38/316 (12%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I A+I + + V L+ G+QA++VGG VRDLLL PKDFDV T A +Q++ F R
Sbjct: 36 IDPALISRNAVKVTSTLQQAGYQAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRR 95
Query: 123 SEIIGRRFPICRVHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------- 169
S IIGRRF I V G +IEVS+F + + V +P G
Sbjct: 96 SRIIGRRFQIVHVTFYGGREQEIIEVSTFRALV------DAVASETLPEGRRLKRAELDS 149
Query: 170 -------------DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
D + + ++ RDFTIN++++DP ++DY +G+ D+R LR
Sbjct: 150 KTHAIDASGRVLRDNVWGTQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRM 209
Query: 217 LIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ + ED R+LR +R AA+ G S + L+S I + +R+ E+ +L
Sbjct: 210 IGDPVTRYREDPVRMLRVVRFAAKTGFSIDDHTREPIVGLASLIHNVPSARLFDEMLKLL 269
Query: 277 SYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
G A +S+ LR+ L K LLP L+Q G+ + N D+ V +P
Sbjct: 270 MSGHAWASLQELRKAGLHKGLLPLLDVALEQPMGQ------RFVQLALDNTDRRVQAGKP 323
Query: 337 ADYTLWVGLLSFHQAL 352
L +H L
Sbjct: 324 VSPGFLFASLLWHHVL 339
>gi|73542462|ref|YP_296982.1| poly(A) polymerase [Ralstonia eutropha JMP134]
gi|72119875|gb|AAZ62138.1| Poly(A) polymerase, PcnB [Ralstonia eutropha JMP134]
Length = 509
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 146/299 (48%), Gaps = 28/299 (9%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+QA++VGG VRDLLL PKDFDV T A +Q++ F RS IIGRRF I
Sbjct: 48 VTSTLQQAGYQAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQSLFRRSRIIGRRFQIVH 107
Query: 135 VHIKGS----VIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDEIDLV------ 175
V G +IEVS+F ET+ + K + L S+ + D V
Sbjct: 108 VTFYGGREQEIIEVSTFRALVDAVASETLPEGRRLKRSELDSKT-HAIDASGRVLRDNVW 166
Query: 176 --RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+ ++ RDFTIN++++DP ++DY +G+ D+R LR + L + ED R+LR
Sbjct: 167 GSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDPTLRYREDPIRMLR 226
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+ G + + L+S I + +R+ E+ +L G A +S+ LR+ L
Sbjct: 227 VVRFAAKTGFGIDEATREPIGGLASLIHNVPSARLFDEMLKLLMSGHAWASLQELRKAGL 286
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
K LLP L+Q G+ + N D+ V +P L +H L
Sbjct: 287 HKGLLPLLDVALEQPMGQ------RFVQLALDNTDRRVQAGKPVSPGFLFAALLWHHVL 339
>gi|268596463|ref|ZP_06130630.1| poly(A) polymerase [Neisseria gonorrhoeae FA19]
gi|268681735|ref|ZP_06148597.1| poly(A) polymerase [Neisseria gonorrhoeae PID332]
gi|268686207|ref|ZP_06153069.1| poly(A) polymerase [Neisseria gonorrhoeae SK-93-1035]
gi|268550251|gb|EEZ45270.1| poly(A) polymerase [Neisseria gonorrhoeae FA19]
gi|268622019|gb|EEZ54419.1| poly(A) polymerase [Neisseria gonorrhoeae PID332]
gi|268626491|gb|EEZ58891.1| poly(A) polymerase [Neisseria gonorrhoeae SK-93-1035]
Length = 452
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 133/244 (54%), Gaps = 13/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL-DQQAG 310
++ SI RL +R+ E+ +L G A + L +++ I +A + D AG
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPLLNALRVSDGIAG 274
Query: 311 KITA 314
K+TA
Sbjct: 275 KMTA 278
>gi|392419914|ref|YP_006456518.1| poly(A) polymerase [Pseudomonas stutzeri CCUG 29243]
gi|390982102|gb|AFM32095.1| poly(A) polymerase [Pseudomonas stutzeri CCUG 29243]
Length = 464
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 140/265 (52%), Gaps = 22/265 (8%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+ SR + R I + + V++ L+ G++AY+VGGCVRDLLL+ PKD+DV T+A +Q
Sbjct: 26 LSSRQHSLHRNEISRYAVSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQ 85
Query: 116 IRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-------------VLL 162
+R +F + +IGRRF + VH +IEV++F A H E + +L
Sbjct: 86 VRAEFRNARVIGRRFKLVHVHFGREIIEVATFR--ANHPEEDDDDASHLASRNESGRILR 143
Query: 163 SQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 222
I YG E D R RDFTIN+L++DP +I D+ G+ D+R +R +
Sbjct: 144 DNI-YGTLEDDAQR------RDFTINALYYDPTTERILDHTRGVHDIRNRLIRLIGDPEQ 196
Query: 223 SFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAE 282
+ ED R+LR +R AA+L + + L+ ++ + +R+ E+ + G AE
Sbjct: 197 RYQEDPVRMLRAVRFAAKLDFEIERHSAEPIVDLADLLDGIPSARLFDEVLKLFLGGKAE 256
Query: 283 SSICLLRRYNLLKILLPFHAAYLDQ 307
+ LL Y+L L P AA L++
Sbjct: 257 RTFELLLEYDLFAPLFPASAAALER 281
>gi|213970146|ref|ZP_03398277.1| Poly(A) polymerase [Pseudomonas syringae pv. tomato T1]
gi|213925027|gb|EEB58591.1| Poly(A) polymerase [Pseudomonas syringae pv. tomato T1]
Length = 491
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 126/237 (53%), Gaps = 20/237 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 70 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 129
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 130 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 181
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 182 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 241
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
K + +L+ + + +R+ E+ + G A + +L L + L P
Sbjct: 242 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFP 298
>gi|291044239|ref|ZP_06569948.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Neisseria gonorrhoeae
DGI2]
gi|291011133|gb|EFE03129.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Neisseria gonorrhoeae
DGI2]
Length = 477
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 133/244 (54%), Gaps = 13/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL-DQQAG 310
++ SI RL +R+ E+ +L G A + L +++ I +A + D AG
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPLLNALRVSDGIAG 274
Query: 311 KITA 314
K+TA
Sbjct: 275 KMTA 278
>gi|407697659|ref|YP_006822447.1| poly(A) polymerase subfamily [Alcanivorax dieselolei B5]
gi|407254997|gb|AFT72104.1| Poly(A) polymerase subfamily [Alcanivorax dieselolei B5]
Length = 461
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 145/283 (51%), Gaps = 18/283 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R + + + VL L GF+AYLVGGC+RDLL R PKDFDV+T A +Q+ R F R
Sbjct: 36 ISRKQVSRAALNVLYGLHKAGFEAYLVGGCLRDLLCGRQPKDFDVVTDATPEQVYRLFKR 95
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAK--------HGEGKET-VLLSQIPYGCDEID 173
S IIGRRF I V G VIEVS+F + H +ET ++L +G E D
Sbjct: 96 SRIIGRRFQIVHVRFGGEVIEVSTFRAFQRDDDLDDDQHRAHEETGLVLRDNTWGNIEED 155
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+R RDFTIN+L+++ +YD+ N D+ +R + + ED R+LR
Sbjct: 156 ALR------RDFTINALYYNIADFALYDFVNSRQDIERGIIRLIGDPQQRYREDPVRMLR 209
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
R AA+LG + + ++S + ++ +R+ E+ + G A S LR+ L
Sbjct: 210 AARFAAKLGFQLDRATRAPIPEMASLLLQVPPARLFDEVLKLFLSGHARDSFEQLRKLGL 269
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L P L+ + G++ +++ N D+ +S ++P
Sbjct: 270 FAFLFPNTHEALESEQGEVWER---LILAAMDNTDRRLSENKP 309
>gi|422322716|ref|ZP_16403756.1| Poly(A) polymerase, partial [Achromobacter xylosoxidans C54]
gi|317402334|gb|EFV82909.1| Poly(A) polymerase [Achromobacter xylosoxidans C54]
Length = 424
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 137/254 (53%), Gaps = 12/254 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V ++L+ G++AY+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCEVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----VLLSQIPYGCDEIDLVRW 177
R+ IIGRRF + V +IE S+F A E +ET +L +G E D R
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPAS--EDQETDAHGRILRDNVFGTHEEDAAR- 146
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFT+N+L++DP ++ D+ NG++DL+ ++R + + ED R+LR +R
Sbjct: 147 -----RDFTMNALYYDPHNEEVIDFHNGVADLKKRQIRMIGDPAKRYREDPVRMLRAVRF 201
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
AA+L + + +++ IE + SR+ E+ +L+ G A + LR L L
Sbjct: 202 AAKLNGTIDPATRQPIRTMADLIENVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHNGL 261
Query: 298 LPFHAAYLDQQAGK 311
LP L+Q G+
Sbjct: 262 LPLLDVVLEQPGGE 275
>gi|254493329|ref|ZP_05106500.1| poly(A) polymerase [Neisseria gonorrhoeae 1291]
gi|268594467|ref|ZP_06128634.1| poly(A) polymerase [Neisseria gonorrhoeae 35/02]
gi|268598595|ref|ZP_06132762.1| poly(A) polymerase [Neisseria gonorrhoeae MS11]
gi|268683962|ref|ZP_06150824.1| poly(A) polymerase [Neisseria gonorrhoeae SK-92-679]
gi|385335340|ref|YP_005889287.1| hypothetical protein NGTW08_0452 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|226512369|gb|EEH61714.1| poly(A) polymerase [Neisseria gonorrhoeae 1291]
gi|268547856|gb|EEZ43274.1| poly(A) polymerase [Neisseria gonorrhoeae 35/02]
gi|268582726|gb|EEZ47402.1| poly(A) polymerase [Neisseria gonorrhoeae MS11]
gi|268624246|gb|EEZ56646.1| poly(A) polymerase [Neisseria gonorrhoeae SK-92-679]
gi|317163883|gb|ADV07424.1| hypothetical protein NGTW08_0452 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 452
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 133/244 (54%), Gaps = 13/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL-DQQAG 310
++ SI RL +R+ E+ +L G A + L +++ I +A + D AG
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPLLNALRVSDGIAG 274
Query: 311 KITA 314
K+TA
Sbjct: 275 KMTA 278
>gi|311104114|ref|YP_003976967.1| poly(A) polymerase [Achromobacter xylosoxidans A8]
gi|310758803|gb|ADP14252.1| poly(A) polymerase [Achromobacter xylosoxidans A8]
Length = 454
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 137/254 (53%), Gaps = 12/254 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V ++L+ G+ AY+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCEVLRQHGYDAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----VLLSQIPYGCDEIDLVRW 177
R+ IIGRRF + V +IE S+F A E +ET +L +G E D R
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPAS--EDQETDEHGRILRDNVFGSHEEDAAR- 146
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFT+N+L++DP ++ D+ NG++DL+ ++R + + ED R+LR +R
Sbjct: 147 -----RDFTMNALYYDPHNEEVIDFHNGVADLKKRQVRIIGDPAKRYREDPVRMLRAVRF 201
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
AA+L + + +++ I+ + SR+ E+ +L+ G A + LR L K L
Sbjct: 202 AAKLNGTIDPATRQPISTMAELIDNVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHKGL 261
Query: 298 LPFHAAYLDQQAGK 311
LP L+Q G+
Sbjct: 262 LPLLDVVLEQPGGE 275
>gi|240013733|ref|ZP_04720646.1| PcnB [Neisseria gonorrhoeae DGI18]
gi|240120803|ref|ZP_04733765.1| PcnB [Neisseria gonorrhoeae PID24-1]
gi|268600948|ref|ZP_06135115.1| poly(A) polymerase [Neisseria gonorrhoeae PID18]
gi|268585079|gb|EEZ49755.1| poly(A) polymerase [Neisseria gonorrhoeae PID18]
Length = 452
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 133/244 (54%), Gaps = 13/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL-DQQAG 310
++ SI RL +R+ E+ +L G A + L +++ I +A + D AG
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPLLNALRVSDGIAG 274
Query: 311 KITA 314
K+TA
Sbjct: 275 KMTA 278
>gi|52424981|ref|YP_088118.1| PcnB protein [Mannheimia succiniciproducens MBEL55E]
gi|52307033|gb|AAU37533.1| PcnB protein [Mannheimia succiniciproducens MBEL55E]
Length = 425
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 132/253 (52%), Gaps = 18/253 (7%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EI 125
MI + + V++ L G++AY+VGGC+RDLLL + PKDFDV T A QI+ F R +
Sbjct: 1 MISKNALSVVEKLNRNGYEAYVVGGCLRDLLLDKKPKDFDVATNARPDQIQAIFQRQCRL 60
Query: 126 IGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDEIDLVR 176
+GRRF + + +IEV++F E +K E E +LL YG E D R
Sbjct: 61 VGRRFRLAHIMFGRDIIEVATFRANHSDIENENASKQSE--EGMLLRDNVYGTLEQDAER 118
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFT+N+L++ P N +YDY NGI DL+ KLR + + ED R+LR +R
Sbjct: 119 ------RDFTVNALYYSPKDNLVYDYFNGIEDLKAGKLRLIGDPVTRYQEDPVRMLRSIR 172
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A+L + K + L+ ++ + +R+ E +L G + LLR Y+L +
Sbjct: 173 FMAKLDMFLDKSSAPHIRKLAHLLKNIPPARLFDESLKLLQSGQGVKTYNLLREYHLFEQ 232
Query: 297 LLPFHAAYLDQQA 309
L P Y ++
Sbjct: 233 LFPSLMPYFTERG 245
>gi|322417672|ref|YP_004196895.1| poly(A) polymerase [Geobacter sp. M18]
gi|320124059|gb|ADW11619.1| poly(A) polymerase [Geobacter sp. M18]
Length = 471
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 147/321 (45%), Gaps = 62/321 (19%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R+++ VL LK GF AYLVGG VRDLLL R PKDFDV+T A Q+++ F
Sbjct: 16 AISRSLLSPNGVKVLYKLKEHGFVAYLVGGGVRDLLLGREPKDFDVVTDATPAQLKKLFR 75
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETV------------------------------- 150
+IGRRF + +H +IEV++F +
Sbjct: 76 NCRLIGRRFRLAHLHFHDEIIEVATFRSTVDAAEAAAEEAPEAVPEPSEAELLEHEREGR 135
Query: 151 --AKHG----EGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYAN 204
HG + ++ ++L +G E D +R RDFT+N+LF+ I D+
Sbjct: 136 RRGHHGPKMLKSEDGMVLRDNVFGTPEEDAIR------RDFTVNALFYSIADFSIIDHVG 189
Query: 205 GISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLD 264
G+ DL+ +RT+ + FTED R++R +R A+ LG + + A+ L +I +
Sbjct: 190 GMEDLKNGLIRTIGDPMVRFTEDPVRMIRAIRFASMLGFNIEPRTEAAIEELCGTINKAT 249
Query: 265 KSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL------------------- 305
R+ E+ +L GA E + +LR L + L P A+L
Sbjct: 250 PPRLYEEVLKLLLMGAGERTYQMLRHSGLFEPLFPHFDAWLSRESDCYPHVRVGKALEWV 309
Query: 306 DQQAGKITAENPMMLMRLFFN 326
D Q G+ A +P +L+ L F
Sbjct: 310 DSQIGQGVAVSPHLLVALMFG 330
>gi|330836498|ref|YP_004411139.1| poly(A) polymerase [Sphaerochaeta coccoides DSM 17374]
gi|329748401|gb|AEC01757.1| poly(A) polymerase [Sphaerochaeta coccoides DSM 17374]
Length = 443
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 130/239 (54%), Gaps = 14/239 (5%)
Query: 72 SWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFP 131
+W V K L+ G +AY+VGG VRDLL+ VPKDFD+ T A+ +Q++R F + IIG+RF
Sbjct: 37 AWSVRK-LQQSGAEAYIVGGAVRDLLVGHVPKDFDIATNASPRQVQRMFWNARIIGKRFK 95
Query: 132 ICRVHIKGSVIEVSSFETVAKHGE-GKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSL 190
+ + ++EVS+F + + E G V +G E D R RDFTIN+L
Sbjct: 96 LVHLVFNDKILEVSTFRSDEEMAEDGSNNV------FGTIEQDARR------RDFTINAL 143
Query: 191 FFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDID 250
++DP + D+ + + D + ++R+LIP +F ED R++R ++ A S +
Sbjct: 144 YYDPMTGHLLDFNDSLQDFKKKRIRSLIPLKETFIEDPVRMIRAIKYAVSTDFSLPLSLR 203
Query: 251 TAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
A+ S S + R SR+ E+N +L+ G + L+ Y LL +LP A ++ A
Sbjct: 204 MAIRSHSRELSRASVSRLTEEVNKILASGVSARIFRKLKDYQLLGYMLPGIAPHIGTPA 262
>gi|293399437|ref|ZP_06643590.1| poly(A) polymerase [Neisseria gonorrhoeae F62]
gi|291610006|gb|EFF39128.1| poly(A) polymerase [Neisseria gonorrhoeae F62]
Length = 451
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 132/244 (54%), Gaps = 13/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKGHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG +
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEQTAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL-DQQAG 310
++ SI RL +R+ E+ +L G A + L +++ I +A + D AG
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPLLNALRVSDGIAG 274
Query: 311 KITA 314
K+TA
Sbjct: 275 KMTA 278
>gi|449128795|ref|ZP_21765041.1| poly(A) polymerase [Treponema denticola SP33]
gi|448941203|gb|EMB22107.1| poly(A) polymerase [Treponema denticola SP33]
Length = 380
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 136/250 (54%), Gaps = 20/250 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L SQGF+AY+VGG VRDLL+ VPKDFD+ T+A +IR+ F S +IGRRF +
Sbjct: 39 IIQRLNSQGFEAYIVGGAVRDLLIGHVPKDFDIATSAEPSKIRKIFRNSRVIGRRFRLVH 98
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
+ + EVS+F + G + +G + D+ R RDFT+N+L++DP
Sbjct: 99 IFFGEKIYEVSTFRSTEDGSIGNK--------FGTIDEDVHR------RDFTLNALYYDP 144
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL--GLSFCKDIDTA 252
+ DY +G+ D+R K+R +IP L F+ED R++R ++ AA G+ F +
Sbjct: 145 IHELVIDYVDGVKDIRAKKVRPIIPLQLIFSEDPVRMIRAIKYAAMTDSGIPFF--LQLQ 202
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA--G 310
+ + +E + SRI E+N ++ G A + L + L L P A++D +
Sbjct: 203 IRKNAHLLEFVSPSRITEEINKIIFSGHASDIVKKLLDFKLYVYLQPGACAFIDSSSKFK 262
Query: 311 KITAENPMML 320
K+ EN +L
Sbjct: 263 KVYIENLALL 272
>gi|59800858|ref|YP_207570.1| hypothetical protein NGO0415 [Neisseria gonorrhoeae FA 1090]
gi|194098159|ref|YP_002001207.1| PcnB [Neisseria gonorrhoeae NCCP11945]
gi|240016171|ref|ZP_04722711.1| PcnB [Neisseria gonorrhoeae FA6140]
gi|59717753|gb|AAW89158.1| putative tRNA nucleotidyltransferase/poly(A) polymerase [Neisseria
gonorrhoeae FA 1090]
gi|193933449|gb|ACF29273.1| PcnB [Neisseria gonorrhoeae NCCP11945]
Length = 452
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 133/244 (54%), Gaps = 13/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL-DQQAG 310
++ SI RL +R+ E+ +L G A + L +++ I +A + D AG
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPLLNALRVSDGIAG 274
Query: 311 KITA 314
K+TA
Sbjct: 275 KMTA 278
>gi|431926168|ref|YP_007239202.1| poly(A) polymerase [Pseudomonas stutzeri RCH2]
gi|431824455|gb|AGA85572.1| poly(A) polymerase [Pseudomonas stutzeri RCH2]
Length = 464
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 140/265 (52%), Gaps = 22/265 (8%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+ SR + R I + + V++ L+ G++AY+VGGCVRDLLL+ PKD+DV T+A +Q
Sbjct: 26 LSSRQHSLHRNEISRYAVSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQ 85
Query: 116 IRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-------------VLL 162
+R +F + +IGRRF + VH +IEV++F A H E + +L
Sbjct: 86 VRAEFRNARVIGRRFKLVHVHFGREIIEVATFR--ANHPEEDDDDASHLASRNESGRILR 143
Query: 163 SQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 222
I YG E D R RDFTIN+L++DP +I D+ G+ D+R +R +
Sbjct: 144 DNI-YGTLEDDAQR------RDFTINALYYDPTTERILDHTRGVHDIRNRLIRLIGDPEQ 196
Query: 223 SFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAE 282
+ ED R+LR +R AA+L + + L+ ++ + +R+ E+ + G AE
Sbjct: 197 RYQEDPVRMLRAVRFAAKLDFEIERHSAEPIVELADLLDGIPSARLFDEVLKLFLGGKAE 256
Query: 283 SSICLLRRYNLLKILLPFHAAYLDQ 307
+ LL Y+L L P AA L++
Sbjct: 257 RTFELLLEYDLFAPLFPASAAALER 281
>gi|422620034|ref|ZP_16688718.1| poly(A) polymerase, partial [Pseudomonas syringae pv. japonica str.
M301072]
gi|330900398|gb|EGH31817.1| poly(A) polymerase, partial [Pseudomonas syringae pv. japonica str.
M301072]
Length = 363
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 126/237 (53%), Gaps = 20/237 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 46 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEGKET------------VLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 106 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 157
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 158 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 217
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
K + +L+ + + +R+ E+ + G A + +L L + L P
Sbjct: 218 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274
>gi|386022036|ref|YP_005940061.1| poly(A) polymerase [Pseudomonas stutzeri DSM 4166]
gi|327482009|gb|AEA85319.1| poly(A) polymerase [Pseudomonas stutzeri DSM 4166]
Length = 463
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 138/264 (52%), Gaps = 20/264 (7%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+ SR + R I + + V++ L+ G++AY+VGGCVRDLLL+ PKD+DV T+A +Q
Sbjct: 26 LSSRQHSLHRNEISRHAVSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQ 85
Query: 116 IRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE------------GKETVLLS 163
+R +F + +IGRRF + VH +IEV++F A H E + +L
Sbjct: 86 VRAEFRNARVIGRRFKLVHVHFGREIIEVATFR--ANHPEEDDEDASQLALRNESGRILR 143
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D R RDFTIN+L++DP +I D+ G+ D+R +R +
Sbjct: 144 DNVYGTLEDDAQR------RDFTINALYYDPTSERILDHTRGVHDIRNRLIRLIGDPEQR 197
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R AA+L + + L+ ++ + +R+ E + G AE
Sbjct: 198 YQEDPVRMLRAVRFAAKLDFEIERHSAEPIADLAELLDGIPSARLFDETLKLFLGGKAER 257
Query: 284 SICLLRRYNLLKILLPFHAAYLDQ 307
+ LL Y+L L P AA L++
Sbjct: 258 TFELLLEYDLFAPLFPASAAALER 281
>gi|423015812|ref|ZP_17006533.1| poly(A) polymerase [Achromobacter xylosoxidans AXX-A]
gi|338781140|gb|EGP45534.1| poly(A) polymerase [Achromobacter xylosoxidans AXX-A]
Length = 458
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 136/254 (53%), Gaps = 12/254 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V ++L+ G+ AY+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCEVLRQHGYDAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQI----PYGCDEIDLVRW 177
R+ IIGRRF + V +IE S+F A E +ET +I +G E D R
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPAS--EDQETDAHGRILRDNVFGTHEEDAAR- 146
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFT+N+L++DP ++ D+ NG++DL+ ++R + + ED R+LR +R
Sbjct: 147 -----RDFTMNALYYDPHNEEVIDFHNGVADLKKRQIRIIGDPAKRYREDPVRMLRAVRF 201
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
AA+L + + +++ IE + SR+ E+ +L+ G A + LR L L
Sbjct: 202 AAKLNGTIDPATRQPIRTMADLIENVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHNGL 261
Query: 298 LPFHAAYLDQQAGK 311
LP L+Q G+
Sbjct: 262 LPLLDVVLEQPGGE 275
>gi|430805220|ref|ZP_19432335.1| poly(A) polymerase [Cupriavidus sp. HMR-1]
gi|429502612|gb|ELA00921.1| poly(A) polymerase [Cupriavidus sp. HMR-1]
Length = 529
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 147/316 (46%), Gaps = 38/316 (12%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I A+I + + V L+ G+QA++VGG VRDLLL PKDFDV T A +Q++ F R
Sbjct: 36 IDPALISRNAVKVTSTLQQAGYQAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRR 95
Query: 123 SEIIGRRFPICRVHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------- 169
S IIGRRF I V G +IEVS+F + + V +P G
Sbjct: 96 SRIIGRRFQIVHVTFYGGREQEIIEVSTFRALV------DAVASETLPEGRRLKRAELDS 149
Query: 170 -------------DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
D + + ++ RDFTIN++++DP ++DY +G+ D+R LR
Sbjct: 150 KTHAIDASGRVLRDNVWGTQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRM 209
Query: 217 LIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ + ED R+LR +R AA+ G S + L+S I + +R+ E+ +L
Sbjct: 210 IGDPVTRYREDPVRMLRVVRFAAKTGFSIDDHTREPIVGLASLIHNVPSARLFDEMLKLL 269
Query: 277 SYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
G A +S+ LR+ L K LLP L+Q G+ + N D+ V +P
Sbjct: 270 MSGHAWASLQELRKAGLHKGLLPLLDVALEQPMGQ------RFVQLALDNTDRRVQAGKP 323
Query: 337 ADYTLWVGLLSFHQAL 352
L +H L
Sbjct: 324 VSPGFLFASLLWHHVL 339
>gi|71908795|ref|YP_286382.1| poly(A) polymerase [Dechloromonas aromatica RCB]
gi|71848416|gb|AAZ47912.1| Poly(A) polymerase, PcnB [Dechloromonas aromatica RCB]
Length = 447
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 124/230 (53%), Gaps = 8/230 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GITR I S V + L+ GF+AY+VGG VRDLL+ PKDFD+ T A +++RR F
Sbjct: 31 GITRDRISSGSRRVCETLQGHGFKAYVVGGAVRDLLIGAEPKDFDIATDATPEEVRRAFR 90
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETV--AKHGEGKETVLLSQIPYGCDEIDLVRWRN 179
RS IIGRRF I V + +EV++F + K + +L +G D R
Sbjct: 91 RSRIIGRRFQIVHVMMGSETLEVTTFRGMLDEKTKTDEHGRVLHDNVFGSHADDAAR--- 147
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFT N+L++DP + DY +G+ DL+ LR + + ED R+LR +R+AA
Sbjct: 148 ---RDFTANALYYDPATEAVIDYHHGVGDLKQKTLRMIGEPRARYREDPVRMLRAVRLAA 204
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
+LGL + + ++ +E + +R+ E+ +L+ G + I LR
Sbjct: 205 KLGLMIDPEAKKPIREMADLLENVPAARLFDEMLKLLTSGHSVKCITQLR 254
>gi|30248100|ref|NP_840170.1| poly A polymerase family protein [Nitrosomonas europaea ATCC 19718]
gi|30179985|emb|CAD83980.1| Poly A polymerase family [Nitrosomonas europaea ATCC 19718]
Length = 460
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 151/312 (48%), Gaps = 24/312 (7%)
Query: 53 WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTAN 112
++ + GI R I S V L+ G+ AY+VGG VRDLLL PKD+DV T A
Sbjct: 24 FRIISCEQHGIPRNRISSGSLKVALALQQAGYSAYVVGGAVRDLLLGLKPKDYDVATNAT 83
Query: 113 LKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF-----------ETVAKHGEGKETVL 161
+++R F S IIGRRF + V KG ++EVS+F E V + + +L
Sbjct: 84 PEEVRAVFRHSRIIGRRFRLVHVISKGEIVEVSTFRGKMADDLVETEDVQANTDATGRLL 143
Query: 162 LSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
+ +G E D+ R RDFTIN+LF+DP +I DY +G D+ +LR +
Sbjct: 144 HDNV-FGSQEEDVRR------RDFTINALFYDPATEEILDYLDGFEDVMAKRLRIIGEPE 196
Query: 222 LSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAA 281
+ ED R+LR +R++A+LG+ + L+ + + +R+ E+ +L G A
Sbjct: 197 QRYREDPVRMLRAVRLSAKLGIQIDDRTAAPIGDLAPLLLNVPPARLFDEMLKLLFSGHA 256
Query: 282 ESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTL 341
+++ LR L LLP L+Q G+ + + N D+ V D+P
Sbjct: 257 LAAVIDLRARGLHHGLLPMLDVILEQPLGE------RFISLVLKNTDERVRQDKPVSPGF 310
Query: 342 WVGLLSFHQALV 353
L +H+ L
Sbjct: 311 LFAALLWHEVLA 322
>gi|104783677|ref|YP_610175.1| poly(A) polymerase I (PAP) [Pseudomonas entomophila L48]
gi|95112664|emb|CAK17392.1| poly(A) polymerase I (PAP) [Pseudomonas entomophila L48]
Length = 464
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 128/245 (52%), Gaps = 19/245 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRDLLL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQAAGYQAYLVGGCVRDLLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H + + +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--APHSDEDQADSHRSSHNASGRILRDNVYGTLEEDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L++DP +I DYANG+ D+R LR + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYYDPVSERILDYANGVHDIRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E + G + +L L + L P +
Sbjct: 217 GIEKHTVAPIRKLAPMLRDIPPARLFEESLKLFLNGQGAMTFEMLVDLELFEPLFPASSH 276
Query: 304 YLDQQ 308
L+++
Sbjct: 277 ALEER 281
>gi|381401949|ref|ZP_09926838.1| poly(A) polymerase [Kingella kingae PYKK081]
gi|380833075|gb|EIC12954.1| poly(A) polymerase [Kingella kingae PYKK081]
Length = 461
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 125/228 (54%), Gaps = 10/228 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL L GF+AYLVGG VRDLLL PKDFDV T A +Q+ R F RS +IGRRFPI
Sbjct: 58 VLHDLHQAGFEAYLVGGAVRDLLLGVEPKDFDVATNATPEQVHRLFKRSRVIGRRFPIVH 117
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V I IEVS+F + K + + ++ I YG E D R RDFT N+L++D
Sbjct: 118 VMIGRDTIEVSTFRSGGKVKQNADGRIMQDIAYGTVEQDAHR------RDFTCNALYYDI 171
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
F ++ D+ G++D++ +L + + ED RILR +R+A +LG + +
Sbjct: 172 FRQEVLDFHQGVNDIQVRRLVMIGDPKARYMEDPVRILRAIRLAGKLGFEVEANTAAPLA 231
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL-LPFH 301
+ + SR+ EL +L G A S C L+++++L I +P H
Sbjct: 232 ECVVLLRKEPVSRLFDELMKILFSGNA--SGC-LQQFHVLGIQNIPIH 276
>gi|92115178|ref|YP_575106.1| poly(A) polymerase [Chromohalobacter salexigens DSM 3043]
gi|91798268|gb|ABE60407.1| poly(A) polymerase [Chromohalobacter salexigens DSM 3043]
Length = 473
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 149/293 (50%), Gaps = 18/293 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R + + + VL L + G +AYLVGGCVRD LL +VPKDFD+ T A ++IR F
Sbjct: 43 VSRRLFSENALKVLYRLHNAGHEAYLVGGCVRDSLLGKVPKDFDIATDATPEEIRTLFRN 102
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRW----R 178
S IIGRRF I V +IEV++F + G+ + L Q G D V W
Sbjct: 103 SRIIGRRFRIVHVRFGREIIEVTTFR--GRPGDDHDDTLSQQSDDGLLLRDNV-WGTIEE 159
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
+++ RDFT+N+L+++ I+D+ANG+SD+ LR + + + ED R+LR +R A
Sbjct: 160 DALRRDFTVNALYYNIADFSIHDWANGVSDIDERTLRLIGDPEVRYREDPVRMLRAVRFA 219
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + + L+ + ++ +R+ E+ + G A + LLR Y L +L
Sbjct: 220 AKLDFDIEPRTEAPIGELAPLLLQIPPARLFEEVLKLFLSGHALRTFELLREYGLFAMLF 279
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPA------DYTLWVGL 345
P D+ + P++ L N D+ + DRP LW G+
Sbjct: 280 P----ETDETLAEYDWAQPLIEQAL-INTDRRIQEDRPVTPAFLYGAMLWPGM 327
>gi|416178572|ref|ZP_11610623.1| poly(A) polymerase [Neisseria meningitidis M6190]
gi|416192603|ref|ZP_11616709.1| poly(A) polymerase [Neisseria meningitidis ES14902]
gi|433468985|ref|ZP_20426414.1| poly(A) polymerase family protein [Neisseria meningitidis 98080]
gi|433492331|ref|ZP_20449425.1| poly(A) polymerase family protein [Neisseria meningitidis NM586]
gi|433494408|ref|ZP_20451478.1| poly(A) polymerase family protein [Neisseria meningitidis NM762]
gi|433496592|ref|ZP_20453633.1| poly(A) polymerase family protein [Neisseria meningitidis M7089]
gi|433498652|ref|ZP_20455661.1| poly(A) polymerase family protein [Neisseria meningitidis M7124]
gi|433500620|ref|ZP_20457606.1| poly(A) polymerase family protein [Neisseria meningitidis NM174]
gi|433502803|ref|ZP_20459768.1| poly(A) polymerase family protein [Neisseria meningitidis NM126]
gi|325132016|gb|EGC54714.1| poly(A) polymerase [Neisseria meningitidis M6190]
gi|325137770|gb|EGC60345.1| poly(A) polymerase [Neisseria meningitidis ES14902]
gi|432205378|gb|ELK61408.1| poly(A) polymerase family protein [Neisseria meningitidis 98080]
gi|432229120|gb|ELK84813.1| poly(A) polymerase family protein [Neisseria meningitidis NM586]
gi|432231082|gb|ELK86752.1| poly(A) polymerase family protein [Neisseria meningitidis NM762]
gi|432234486|gb|ELK90106.1| poly(A) polymerase family protein [Neisseria meningitidis M7124]
gi|432235292|gb|ELK90908.1| poly(A) polymerase family protein [Neisseria meningitidis M7089]
gi|432235911|gb|ELK91520.1| poly(A) polymerase family protein [Neisseria meningitidis NM174]
gi|432240899|gb|ELK96430.1| poly(A) polymerase family protein [Neisseria meningitidis NM126]
Length = 453
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETTA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|146283614|ref|YP_001173767.1| poly(A) polymerase [Pseudomonas stutzeri A1501]
gi|145571819|gb|ABP80925.1| poly(A) polymerase [Pseudomonas stutzeri A1501]
Length = 466
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 138/264 (52%), Gaps = 20/264 (7%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+ SR + R I + + V++ L+ G++AY+VGGCVRDLLL+ PKD+DV T+A +Q
Sbjct: 29 LSSRQHSLHRNEISRHAVSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQ 88
Query: 116 IRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE------------GKETVLLS 163
+R +F + +IGRRF + VH +IEV++F A H E + +L
Sbjct: 89 VRAEFRNARVIGRRFKLVHVHFGREIIEVATFR--ANHPEEDDEDASQLASRNESGRILR 146
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D R RDFTIN+L++DP +I D+ G+ D+R +R +
Sbjct: 147 DNVYGTLEDDAQR------RDFTINALYYDPTSERILDHTRGVHDIRNRLIRLIGDPEQR 200
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R AA+L + + L+ ++ + +R+ E + G AE
Sbjct: 201 YQEDPVRMLRAVRFAAKLDFEIERHSAEPIADLAELLDGIPSARLFDETLKLFLGGKAER 260
Query: 284 SICLLRRYNLLKILLPFHAAYLDQ 307
+ LL Y+L L P AA L++
Sbjct: 261 TFELLLEYDLFAPLFPASAAALER 284
>gi|254491967|ref|ZP_05105145.1| poly(A) polymerase subfamily [Methylophaga thiooxidans DMS010]
gi|224462782|gb|EEF79053.1| poly(A) polymerase subfamily [Methylophaga thiooxydans DMS010]
Length = 456
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 137/278 (49%), Gaps = 15/278 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I Q + VL LK GF+AYLVGGCVRDLLL PKDFDV T A +Q+ + F R
Sbjct: 36 ISRKQISQNALNVLYTLKDAGFEAYLVGGCVRDLLLGHEPKDFDVSTNALPEQVHKLFRR 95
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQI----PYGCDEIDLVRWR 178
S +IGRRF + V VIEV++F A G + +I YG E D WR
Sbjct: 96 SRLIGRRFKLVHVRFGREVIEVATFR--APPGANGDVDAQGRIVQDNVYGTLEQDA--WR 151
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT+N+L+++ I DY GI DL +R + + ED R+LR LR
Sbjct: 152 ----RDFTVNALYYNIRDFSIIDYTGGIEDLNAGVIRLIGDVETRYREDPVRMLRALRFV 207
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+LGL + + + S ++ + +R+ E + G A + LL Y L +
Sbjct: 208 AKLGLQVDAKTEQGIFNWGSLLKDIPPARLFDETLKLYLSGNAAVTHELLCHYGLFDHMY 267
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
P A L Q+ +LM+ N D + ++P
Sbjct: 268 PQTAVLLHQEEDNYPR---TLLMKALENTDSRIDANKP 302
>gi|29840548|ref|NP_829654.1| poly(A) polymerase [Chlamydophila caviae GPIC]
gi|29834898|gb|AAP05532.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC]
Length = 428
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 126/227 (55%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G +AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 48 VVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E L+++ +G E D++R RDFTIN LF+D
Sbjct: 108 IRFSNQIIEVSTFRS----GSADEDYLITKDNLWGTAEEDVLR------RDFTINGLFYD 157
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+SDL+ LRT+ ++ F +D R+LR L+I AR + A+
Sbjct: 158 PAEETIIDYTGGVSDLQNRYLRTIGDPFVRFKQDPVRMLRLLKILARASFTVDPKTLEAL 217
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + +R+ EL ML GA+ L +Y +L+IL P+
Sbjct: 218 QECRYELVKSAPARVFEELIKMLGSGASSEFFKLTVKYQMLEILFPY 264
>gi|289674926|ref|ZP_06495816.1| poly(A) polymerase, partial [Pseudomonas syringae pv. syringae FF5]
Length = 408
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 126/237 (53%), Gaps = 20/237 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 46 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 106 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 157
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 158 RDFTINALYYDPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 217
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
K + +L+ + + +R+ E+ + G A + +L L + L P
Sbjct: 218 FGIEKHSAQPIRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFP 274
>gi|237802072|ref|ZP_04590533.1| poly(A) polymerase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331024928|gb|EGI04984.1| poly(A) polymerase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 467
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 128/244 (52%), Gaps = 20/244 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ G+QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 46 IVERLQNAGYQAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 105
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIH 182
+H +IEV++F A H + E +L YG E D R
Sbjct: 106 IHFGREIIEVATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------ 157
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFTIN+L++DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 158 RDFTINALYYDPVSERVLDYANGVHDIRNKLIRLIGDPEQRYKEDPVRMLRAVRFAAKLD 217
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
K + +L+ + + +R+ E+ + G A + +L L L P +
Sbjct: 218 FGIEKHSAQPISALAPMLRDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFDPLFPASS 277
Query: 303 AYLD 306
L+
Sbjct: 278 KALE 281
>gi|89095126|ref|ZP_01168052.1| poly(A) polymerase [Neptuniibacter caesariensis]
gi|89080621|gb|EAR59867.1| poly(A) polymerase [Oceanospirillum sp. MED92]
Length = 467
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 140/264 (53%), Gaps = 16/264 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R + + V L+ GF+ YLVGGC+RDLLL++ PKDFDV T A+ ++ F R
Sbjct: 43 ISRRFLDDNALKVAYRLQDAGFEGYLVGGCIRDLLLKKRPKDFDVATDAHPEEAAELFRR 102
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHGEGKE------TVLLSQIPYGCDEI 172
+ +IGRRF + V +IEV++F ++ ++ GEG++ ++L YG E
Sbjct: 103 ARLIGRRFKLVHVRFGRDLIEVATFRASHDSQSEEGEGEQGKQCDSGLILRDNVYGTIED 162
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +R RDFT+N+L++ P + +YD+ANG DL+ LR + + ED R+L
Sbjct: 163 DALR------RDFTVNALYYCPKDHCVYDFANGYEDLQKGILRMIGDPEARYKEDPVRML 216
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R R AA+L + + + L+ ++R+ +R+ E+ + G A S LRR
Sbjct: 217 RAARFAAKLDFTIDPQSELPIIPLAPMLKRIAPARLFDEVLKLFQSGHAVQSYEQLRRLE 276
Query: 293 LLKILLPFHAAYLDQQAGKITAEN 316
L + L P L Q+ + EN
Sbjct: 277 LFEPLFPLVHRTLQQEQLDVPLEN 300
>gi|421485424|ref|ZP_15932983.1| poly(A) polymerase [Achromobacter piechaudii HLE]
gi|400196343|gb|EJO29320.1| poly(A) polymerase [Achromobacter piechaudii HLE]
Length = 462
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 136/254 (53%), Gaps = 12/254 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V ++L+ G++ Y+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCEVLRQHGYEGYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----VLLSQIPYGCDEIDLVRW 177
R+ IIGRRF + V +IE S+F A E +ET +L +G E D R
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPAS--EDQETDEHGRILRDNVFGSQEEDAKR- 146
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFT+N+L++DP ++ DY NG++DL+ ++R + + ED R+LR +R
Sbjct: 147 -----RDFTMNALYYDPHNEEVIDYHNGVADLKKRQVRIIGDPVKRYREDPVRMLRAVRF 201
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
AA+L + + +++ IE + SR+ E+ +L+ G A + LR L L
Sbjct: 202 AAKLNGTIDPATRQPISTMAELIENVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHNGL 261
Query: 298 LPFHAAYLDQQAGK 311
LP L+Q G+
Sbjct: 262 LPLLDVVLEQPGGE 275
>gi|293603552|ref|ZP_06685973.1| poly(A) polymerase [Achromobacter piechaudii ATCC 43553]
gi|292817988|gb|EFF77048.1| poly(A) polymerase [Achromobacter piechaudii ATCC 43553]
Length = 460
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 136/254 (53%), Gaps = 12/254 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V ++L+ G++ Y+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCEVLRQHGYEGYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----VLLSQIPYGCDEIDLVRW 177
R+ IIGRRF + V +IE S+F A E +ET +L +G E D R
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPAS--EDQETDEHGRILRDNVFGSQEEDAKR- 146
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFT+N+L++DP ++ DY NG++DL+ ++R + + ED R+LR +R
Sbjct: 147 -----RDFTMNALYYDPHNEEVIDYHNGVADLKKRQVRIIGDPVKRYREDPVRMLRAVRF 201
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
AA+L + + +++ IE + SR+ E+ +L+ G A + LR L L
Sbjct: 202 AAKLNGTIDPATREPISTMAELIENVPASRLFDEMLKLLTCGHAMDCLRQLRADGLHNGL 261
Query: 298 LPFHAAYLDQQAGK 311
LP L+Q G+
Sbjct: 262 LPLLDVVLEQPGGE 275
>gi|398851535|ref|ZP_10608219.1| poly(A) polymerase [Pseudomonas sp. GM80]
gi|398246625|gb|EJN32108.1| poly(A) polymerase [Pseudomonas sp. GM80]
Length = 467
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 124/243 (51%), Gaps = 16/243 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQGAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+H +IEV++F E + + +L YG E D R RD
Sbjct: 105 IHFGREIIEVATFRANHPVNEDDEDSNQSSRNESGRILRDNVYGTLEEDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFG 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + L+ + + +R+ E+ + G + +L L L P A
Sbjct: 219 IEKHTVQPIRELAPMLREIPSARLFEEVLKLFLSGHGAITFEMLVDLQLFAPLFPASADA 278
Query: 305 LDQ 307
L+
Sbjct: 279 LEH 281
>gi|149376132|ref|ZP_01893897.1| poly(A) polymerase [Marinobacter algicola DG893]
gi|149359537|gb|EDM47996.1| poly(A) polymerase [Marinobacter algicola DG893]
Length = 439
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 131/252 (51%), Gaps = 26/252 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R+ I +P+ VL L + G++AYLVGG VRD+LL PKDFD+ T A +++ F
Sbjct: 24 VSRSFISEPAKKVLSRLNNAGYEAYLVGGGVRDILLGGKPKDFDIATNATPEEVHDLFRN 83
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFET---------------VAKHGEGKETVLLSQIPY 167
S +IGRRF I V VIEV++F ++HG +LL Y
Sbjct: 84 SRLIGRRFRIVHVLFGREVIEVTTFRGNAAEAEADDDDDDRRTSEHG-----LLLRDNVY 138
Query: 168 GCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
G E D +R RDFT+N+L++ + D+ANGI DL ++R + + ED
Sbjct: 139 GNLEEDALR------RDFTVNALYYCIRDFTVVDFANGIEDLENRQMRLIGDPETRYRED 192
Query: 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
R+LR +R AA+LG D + + L+ + + +R+ E+ + S G E++ L
Sbjct: 193 PVRMLRAVRFAAKLGFDIEPDTEAPIRELAPLLTHIPPARLFEEVLKLFSAGYGEATYDL 252
Query: 288 LRRYNLLKILLP 299
L YNLL L P
Sbjct: 253 LSEYNLLAPLFP 264
>gi|149927694|ref|ZP_01915946.1| probable polynucleotide adenylyltransferase protein [Limnobacter
sp. MED105]
gi|149823520|gb|EDM82750.1| probable polynucleotide adenylyltransferase protein [Limnobacter
sp. MED105]
Length = 485
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 134/251 (53%), Gaps = 8/251 (3%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I R ++ + V + L+S+G++A++VGG VRDLLL PKDFDV T A+ +Q +R F R
Sbjct: 54 IDRRLVSHNAIRVCETLQSKGYKAFVVGGAVRDLLLGMRPKDFDVATDASPEQTQRLFRR 113
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE--TVLLSQIPYGCDEIDLVRWRNS 180
+ +IGRRF I V IE S+F +A K+ +L +G + D R
Sbjct: 114 ARVIGRRFQIVHVMFGPETIETSTFRALASASNEKDEHGRVLRDNEFGRQDEDASR---- 169
Query: 181 IHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAAR 240
RDFT+N++++DP ++DY +G+ DLR LR + L + ED R+LR +R AA+
Sbjct: 170 --RDFTVNAMYYDPSTETVWDYHHGMEDLRSRVLRMIGEPSLRYREDPVRMLRVVRFAAK 227
Query: 241 LGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
L + LS + + SR+ E+ +L G+A + + LR+ L + P
Sbjct: 228 LNFEIEPATYAPIAELSDLLRNVPASRLFDEMLKLLMSGSAMACLKGLRKAGLHHGVFPL 287
Query: 301 HAAYLDQQAGK 311
A L+ + G+
Sbjct: 288 LDAILEHERGE 298
>gi|398991493|ref|ZP_10694623.1| poly(A) polymerase [Pseudomonas sp. GM24]
gi|399011845|ref|ZP_10714175.1| poly(A) polymerase [Pseudomonas sp. GM16]
gi|398117429|gb|EJM07181.1| poly(A) polymerase [Pseudomonas sp. GM16]
gi|398139772|gb|EJM28766.1| poly(A) polymerase [Pseudomonas sp. GM24]
Length = 467
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 124/243 (51%), Gaps = 16/243 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQGAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+H +IEV++F E + + +L YG E D R RD
Sbjct: 105 IHFGREIIEVATFRANHPVNEDDEDSNQSSRNESGRILRDNVYGTLEEDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFG 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + L+ + + +R+ E+ + G + +L L L P A
Sbjct: 219 IEKHTVQPIRELAPMLREIPSARLFEEVLKLFLSGHGAITFEMLVDLQLFAPLFPASADA 278
Query: 305 LDQ 307
L+
Sbjct: 279 LEH 281
>gi|387774217|ref|ZP_10129489.1| polynucleotide adenylyltransferase [Haemophilus parahaemolyticus
HK385]
gi|386902361|gb|EIJ67202.1| polynucleotide adenylyltransferase [Haemophilus parahaemolyticus
HK385]
Length = 477
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 143/270 (52%), Gaps = 18/270 (6%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T+ + I+ P+ + +++ L G++AY+VGGCVRDLLL + PKDFD+ T A +
Sbjct: 34 TIHAGQYCISPKDFPKNALAIVEKLHRAGYEAYIVGGCVRDLLLGKKPKDFDISTNARPE 93
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEID 173
++++ F R ++GRRF + + + EV++F G E +I DE
Sbjct: 94 EVQKIFGRQCRLVGRRFRLAHIMYGREIFEVATFRA------GHENHTNDKISKVSDEGM 147
Query: 174 LVR-------WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
L+R + ++ RDF++N+ ++DP N IYD+ NGI +LR KLR L + E
Sbjct: 148 LLRDNVYGTLFEDAGRRDFSVNAFYYDPRHNLIYDFFNGIEELRAGKLRLLGEPTQRYQE 207
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K+ + + +L+ + ++ +R+ E +L G +
Sbjct: 208 DPVRMLRAIRFMAKLDMFLDKETEAPIKTLAPLLSKIPAARLFDESLKLLQSGTGFKTYE 267
Query: 287 LLRRYNLLK----ILLPFHAAYLDQQAGKI 312
LLR Y+L + +L PF + D A ++
Sbjct: 268 LLREYHLFEQLFPVLTPFFTEHQDSNAERM 297
>gi|254804714|ref|YP_003082935.1| poly(A) polymerase [Neisseria meningitidis alpha14]
gi|254668256|emb|CBA05110.1| poly(A) polymerase [Neisseria meningitidis alpha14]
Length = 453
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|385851500|ref|YP_005898015.1| poly(A) polymerase [Neisseria meningitidis M04-240196]
gi|325206323|gb|ADZ01776.1| poly(A) polymerase [Neisseria meningitidis M04-240196]
Length = 453
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETTA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|345429911|ref|YP_004823030.1| poly(A) polymerase [Haemophilus parainfluenzae T3T1]
gi|301155973|emb|CBW15443.1| poly(A) polymerase I [Haemophilus parainfluenzae T3T1]
Length = 419
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 133/252 (52%), Gaps = 18/252 (7%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EI 125
M + + V++ L+ QG+ AY+VGGC+RDLLL + PKDFDV T A QI+ F R +
Sbjct: 1 MFSRNAITVVEKLQRQGYDAYIVGGCLRDLLLGKHPKDFDVATNARPDQIQAVFQRQCRL 60
Query: 126 IGRRFPICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVR 176
+GRRF + + VIEV++F A H + + E +LL YG E D R
Sbjct: 61 VGRRFRLAHIMFGRDVIEVATFR--ASHSDARSENQAKQSDEGMLLRDNVYGTIEQDAER 118
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFT+N+L+++P N + DY NGI DL+ KLR + + ED R+LR +R
Sbjct: 119 ------RDFTVNALYYNPQDNTLRDYFNGIDDLKNGKLRLIGDPVTRYQEDPVRMLRSVR 172
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A+L + K + + L+ ++ + +R+ E +L G + LLR+Y L +
Sbjct: 173 FMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLKLLQSGNGVKTYKLLRQYGLFEQ 232
Query: 297 LLPFHAAYLDQQ 308
L P Y ++
Sbjct: 233 LFPSLTPYFTEK 244
>gi|268603255|ref|ZP_06137422.1| poly(A) polymerase [Neisseria gonorrhoeae PID1]
gi|268587386|gb|EEZ52062.1| poly(A) polymerase [Neisseria gonorrhoeae PID1]
Length = 451
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 132/244 (54%), Gaps = 13/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG +
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSEQTAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL-DQQAG 310
++ SI RL +R+ E+ +L G A + L +++ I +A + D AG
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDIHPLLNALRVSDGIAG 274
Query: 311 KITA 314
K+TA
Sbjct: 275 KMTA 278
>gi|398964739|ref|ZP_10680516.1| poly(A) polymerase [Pseudomonas sp. GM30]
gi|398148125|gb|EJM36813.1| poly(A) polymerase [Pseudomonas sp. GM30]
Length = 466
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 124/243 (51%), Gaps = 16/243 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQGAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+H +IEV++F E + + +L YG E D R RD
Sbjct: 105 IHFGREIIEVATFRANHPVNEDDEDSNQSSRNESGRILRDNVYGTLEEDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFG 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + L+ + + +R+ E+ + G + +L L L P A
Sbjct: 219 IEKHTVQPIRELAPMLREIPSARLFEEVLKLFLSGHGAITFEMLVDLQLFAPLFPASADA 278
Query: 305 LDQ 307
L+
Sbjct: 279 LEH 281
>gi|421616605|ref|ZP_16057608.1| poly(A) polymerase [Pseudomonas stutzeri KOS6]
gi|409781357|gb|EKN60957.1| poly(A) polymerase [Pseudomonas stutzeri KOS6]
Length = 464
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 139/264 (52%), Gaps = 20/264 (7%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+ SR + R+ I + + V++ L+ G++AY+VGGCVRDLLL+ PKD+DV T+A +Q
Sbjct: 26 LSSRQHSLHRSEISRYAVSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQ 85
Query: 116 IRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE------------GKETVLLS 163
+R +F + +IGRRF + VH +IEV++F A H E + +L
Sbjct: 86 VRAEFRNARVIGRRFKLVHVHFGREIIEVATFR--ANHPEEDDDDASHLASRNESGRILR 143
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D R RDFTIN+L++DP +I D+ G+ D+R +R +
Sbjct: 144 DNIYGTLEDDAQR------RDFTINALYYDPTSERILDHTRGVHDIRNRLIRLIGDPEQR 197
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R AA+L + + L+ + + +R+ E+ + G AE
Sbjct: 198 YQEDPVRMLRAVRFAAKLDFEIERHSAEPIIDLADLLGGIPSARLFDEVLKLFLGGKAER 257
Query: 284 SICLLRRYNLLKILLPFHAAYLDQ 307
+ LL Y+L L P AA L++
Sbjct: 258 TFELLLEYDLFAPLFPASAAALER 281
>gi|421565087|ref|ZP_16010873.1| poly(A) polymerase [Neisseria meningitidis NM3081]
gi|402345416|gb|EJU80533.1| poly(A) polymerase [Neisseria meningitidis NM3081]
Length = 453
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|338998842|ref|ZP_08637503.1| poly(A) polymerase [Halomonas sp. TD01]
gi|338764224|gb|EGP19195.1| poly(A) polymerase [Halomonas sp. TD01]
Length = 461
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 13/265 (4%)
Query: 42 DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRV 101
DS D + + + ++R I + + VL L GF AYLVGGC+RD LL ++
Sbjct: 21 DSPESAADALSPRIIPRSEHPVSRQQISEAALKVLYRLNGAGFDAYLVGGCIRDALLGKM 80
Query: 102 PKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAK--HG----- 154
PKDFDV T A +Q+R F S +IGRRF I V VIEV++F + HG
Sbjct: 81 PKDFDVATNATPEQVRDLFRNSRLIGRRFRIVHVRFGREVIEVTTFRGKPQDEHGDHIAQ 140
Query: 155 EGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKL 214
+ + +LL +G E D +R RDFT+N+L+++ I+D+ANG D+ L
Sbjct: 141 QSDDGLLLRDNVWGNIEEDALR------RDFTVNALYYNIADFTIHDFANGARDIESRTL 194
Query: 215 RTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNY 274
R + + ED R+LR +R AA+L + + M+ L+ + ++ +R+ E+
Sbjct: 195 RLIGDPVTRYREDPVRMLRAVRFAAKLDFTIEPATEEPMYDLAPLLLQIPPARLFDEVLK 254
Query: 275 MLSYGAAESSICLLRRYNLLKILLP 299
+ G + LL YNL +L P
Sbjct: 255 LFMSGHGLITFRLLSHYNLFGMLFP 279
>gi|424924943|ref|ZP_18348304.1| poly(A) polymerase [Pseudomonas fluorescens R124]
gi|404306103|gb|EJZ60065.1| poly(A) polymerase [Pseudomonas fluorescens R124]
Length = 466
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 124/243 (51%), Gaps = 16/243 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+ G+QAYLVGGCVRD+LL PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQGAGYQAYLVGGCVRDMLLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+H +IEV++F E + + +L YG E D R RD
Sbjct: 105 IHFGREIIEVATFRANHPVNEDDEDSNQSSRNESGRILRDNVYGTLEEDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L++DP +I DYANG+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYYDPVSERILDYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFG 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + L+ + + +R+ E+ + G + +L L L P A
Sbjct: 219 IEKHTVQPIRELAPMLREIPSARLFEEVLKLFLSGHGAITFEMLVDLQLFAPLFPASADA 278
Query: 305 LDQ 307
L+
Sbjct: 279 LEH 281
>gi|385328165|ref|YP_005882468.1| putative poly(A) polymerase [Neisseria meningitidis alpha710]
gi|385342162|ref|YP_005896033.1| poly(A) polymerase [Neisseria meningitidis M01-240149]
gi|385856991|ref|YP_005903503.1| poly(A) polymerase [Neisseria meningitidis NZ-05/33]
gi|416172312|ref|ZP_11608729.1| poly(A) polymerase [Neisseria meningitidis OX99.30304]
gi|416188158|ref|ZP_11614627.1| poly(A) polymerase [Neisseria meningitidis M0579]
gi|308389017|gb|ADO31337.1| putative poly(A) polymerase [Neisseria meningitidis alpha710]
gi|325129986|gb|EGC52781.1| poly(A) polymerase [Neisseria meningitidis OX99.30304]
gi|325135941|gb|EGC58551.1| poly(A) polymerase [Neisseria meningitidis M0579]
gi|325202368|gb|ADY97822.1| poly(A) polymerase [Neisseria meningitidis M01-240149]
gi|325207880|gb|ADZ03332.1| poly(A) polymerase [Neisseria meningitidis NZ-05/33]
Length = 453
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 132/244 (54%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++++LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLGFDLSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|421567280|ref|ZP_16013016.1| poly(A) polymerase [Neisseria meningitidis NM3001]
gi|402344291|gb|EJU79432.1| poly(A) polymerase [Neisseria meningitidis NM3001]
Length = 453
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG +RDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETTA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|421540019|ref|ZP_15986172.1| poly(A) polymerase [Neisseria meningitidis 93004]
gi|402320303|gb|EJU55794.1| poly(A) polymerase [Neisseria meningitidis 93004]
Length = 453
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETTA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|421548587|ref|ZP_15994612.1| poly(A) polymerase [Neisseria meningitidis NM2781]
gi|402326248|gb|EJU61653.1| poly(A) polymerase [Neisseria meningitidis NM2781]
Length = 453
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETTA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|161869779|ref|YP_001598947.1| poly(A) polymerase [Neisseria meningitidis 053442]
gi|161595332|gb|ABX72992.1| poly(A) polymerase [Neisseria meningitidis 053442]
Length = 453
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 132/244 (54%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++++LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLGFDLSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|421537863|ref|ZP_15984045.1| poly(A) polymerase [Neisseria meningitidis 93003]
gi|402317900|gb|EJU53427.1| poly(A) polymerase [Neisseria meningitidis 93003]
Length = 453
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|302338419|ref|YP_003803625.1| poly(A) polymerase [Spirochaeta smaragdinae DSM 11293]
gi|301635604|gb|ADK81031.1| poly(A) polymerase [Spirochaeta smaragdinae DSM 11293]
Length = 393
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 139/266 (52%), Gaps = 16/266 (6%)
Query: 35 MCREMCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVR 94
M + +D Q V ++ T + I+ I ++ + + LK GF+AY+VGG VR
Sbjct: 1 MLKRYATDEKGQSVPIAKIYT--EQEHPISSDQIDSDAFAITRRLKDAGFEAYIVGGAVR 58
Query: 95 DLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHI-KGSVIEVSSFETVAKH 153
DLL + PKDFD+ T+A KQ+R+ F S IIGRRF + VH G +IEVS+F T +
Sbjct: 59 DLLQGKSPKDFDIATSAYPKQVRKLFRNSRIIGRRFRLVHVHYGSGKIIEVSTFRTDDEE 118
Query: 154 GEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLK 213
G +G E D+ R RDF++N+L+FDP I D+ +G+ D+R K
Sbjct: 119 GNSNNV-------FGTLEDDVKR------RDFSVNALYFDPQKLHIIDFVDGVKDVRAGK 165
Query: 214 LRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELN 273
+++L+P +F +D R++R ++ + G + A+ +ER SR+ E+
Sbjct: 166 MKSLLPLDRTFKDDPVRMIRAIKYSTGGGFRMGWKLRRAIARHVDELERCPSSRMTEEVF 225
Query: 274 YMLSYGAAESSICLLRRYNLLKILLP 299
+L+ G + I + L + +LP
Sbjct: 226 KVLASGRSALLIDEFLKTGLFRHMLP 251
>gi|238918730|ref|YP_002932244.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Edwardsiella ictaluri 93-146]
gi|238868298|gb|ACR68009.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Edwardsiella ictaluri 93-146]
Length = 456
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 152/320 (47%), Gaps = 31/320 (9%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 ISRQQISENALKVLYRLNKSGYEAYLVGGGVRDLLLGKRPKDFDVTTNATPEQVRKLFRN 86
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG--------EGKETVLLSQIPYGCDEIDL 174
++GRRF + V +IEV++F +H +GK +LL YG E D
Sbjct: 87 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEHANEGKNIAQQGKNGMLLRDNVYGNIEEDA 146
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++ + DY G++DL ++R + + ED R+LR
Sbjct: 147 QR------RDFTINSLYYSVADFSVRDYTGGLNDLHAGQIRLIGDPETRYREDPVRMLRA 200
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L +S + + L+S + + +R+ E +L G + LR Y L
Sbjct: 201 VRFAAKLQMSINPETAAPIAHLASLLRDIPAARLFEEALKLLQAGYGYETYLKLREYQLF 260
Query: 295 KILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWVGLL 346
+ L P + ++PM +L ++ N D + D PA LW L+
Sbjct: 261 QPLFPVICRHFTP-----NGDSPMEKILAQVLKNTDHRIQNDMRVNPAFLFATMLWYPLI 315
Query: 347 SFHQALVSDP----QDAFVV 362
Q + + DAF +
Sbjct: 316 ELAQKITQEGGLTYHDAFAL 335
>gi|121634621|ref|YP_974866.1| poly(A) polymerase [Neisseria meningitidis FAM18]
gi|120866327|emb|CAM10068.1| putative poly(A) polymerase [Neisseria meningitidis FAM18]
Length = 448
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 39 VIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 98
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 99 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 152
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 153 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETAA--- 209
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 210 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 269
Query: 310 GKIT 313
GK+T
Sbjct: 270 GKMT 273
>gi|397663979|ref|YP_006505517.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila]
gi|395127390|emb|CCD05582.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila]
Length = 423
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 142/288 (49%), Gaps = 15/288 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I++A I + VL L S GFQAY+VGG VRDLLL + PKDFD+ T A +I+ F
Sbjct: 12 ISKADISNNALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEIKNLFKN 71
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWR 178
+ IIGRRF + + +IEV++F + A H + +L+ YG +D WR
Sbjct: 72 ARIIGRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGS--LDEDAWR 129
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFTINSL+++ + I D+ G+ D++ +R + + ED R+LR +R +
Sbjct: 130 ----RDFTINSLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFS 185
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + + +S I + SR+ E+ + G AES LL Y L L
Sbjct: 186 AKLQFNLSPETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLF 245
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA D NP++ + L N D + +P V +L
Sbjct: 246 PQTAALFDSH----YPVNPLLGIAL-ENTDTRIRDGKPVTPAFLVAVL 288
>gi|421561012|ref|ZP_16006865.1| poly(A) polymerase family protein [Neisseria meningitidis NM2657]
gi|254670458|emb|CBA06113.1| poly(A) polymerase [Neisseria meningitidis alpha153]
gi|402339492|gb|EJU74708.1| poly(A) polymerase family protein [Neisseria meningitidis NM2657]
Length = 453
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETTA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|297539331|ref|YP_003675100.1| poly(A) polymerase [Methylotenera versatilis 301]
gi|297258678|gb|ADI30523.1| poly(A) polymerase [Methylotenera versatilis 301]
Length = 486
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 153/322 (47%), Gaps = 35/322 (10%)
Query: 54 KTVDSRNLGIT----------RAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPK 103
K VDS N G T R ++ + + L GF+AY+VGG VRDLLL R PK
Sbjct: 45 KNVDSVNHGATVIAHKTHKFDRDLLSNAALKTTEGLHKAGFEAYIVGGAVRDLLLNRTPK 104
Query: 104 DFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLS 163
DFDV T A +++ R F RS IIG+RF + V IEVS+F EG
Sbjct: 105 DFDVATDATPEEVNRIFRRSRIIGKRFRLVHVLFGDETIEVSTFRGSHLETEGN------ 158
Query: 164 QIPYG----CDEIDLVR-------WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCL 212
P G D ++R +++ RDFT N+L+++P ++ D+ +G +D++
Sbjct: 159 --PKGDSKTTDSGRIIRDNVFGSIVDDAVRRDFTANALYYNPASQEVLDFHHGYTDIKAG 216
Query: 213 KLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMEL 272
LR + + ED R+LR +R++A+LGL + + ++ ++ + SR+ E+
Sbjct: 217 VLRMIGKPETRYAEDPVRMLRAVRLSAKLGLKIDQATQAPIAKMADLLQDVPPSRLFDEM 276
Query: 273 NYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVS 332
+ G A S+ LR +L LLP L+Q G+ +M N D +
Sbjct: 277 LKLFLSGHAMESVSALREQHLHHGLLPMLDVVLEQPMGE------RFVMLALKNTDDRIL 330
Query: 333 CDRPADYTLWVGLLSFHQALVS 354
+ A+ + L +H+ L +
Sbjct: 331 SGKSANPSFLFATLLWHEMLAA 352
>gi|332283312|ref|YP_004415223.1| poly(A) polymerase [Pusillimonas sp. T7-7]
gi|330427265|gb|AEC18599.1| poly(A) polymerase [Pusillimonas sp. T7-7]
Length = 453
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 133/253 (52%), Gaps = 10/253 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V ++L+++G+ AY+VGG VRDL++ PKDFDV T A QIR F
Sbjct: 30 GIDRRNVSRHAIKVCEVLRAEGYDAYIVGGAVRDLIVGLEPKDFDVATNATPNQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA---KHGEGKETVLLSQIPYGCDEIDLVRWR 178
R+ IIG+RF + V +IE S+F A +H + +L + +G + D R
Sbjct: 90 RARIIGKRFQLVHVVFGQEIIETSTFRATATSDEHTDEHGRILRDNL-FGSQQEDAAR-- 146
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT+N+L++DP ++ DY G+ DL+ +R + + ED R+LR LR A
Sbjct: 147 ----RDFTLNALYYDPINEEVIDYHRGVPDLKNRVVRMIGDPEKRYREDPVRMLRALRFA 202
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + + LS IE + SR+ E +L+ G A + L+ L K LL
Sbjct: 203 AKLNGTIDPATQAPIAPLSGLIEHVPSSRLFDETLKLLTCGHAMDCLRQLQTMGLHKGLL 262
Query: 299 PFHAAYLDQQAGK 311
P A ++ G+
Sbjct: 263 PLIDAVFQEEGGE 275
>gi|385854973|ref|YP_005901486.1| poly(A) polymerase [Neisseria meningitidis M01-240355]
gi|325203914|gb|ADY99367.1| poly(A) polymerase [Neisseria meningitidis M01-240355]
Length = 445
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 36 VIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 95
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 96 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 149
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 150 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETAA--- 206
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 207 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 266
Query: 310 GKIT 313
GK+T
Sbjct: 267 GKMT 270
>gi|421542245|ref|ZP_15988355.1| poly(A) polymerase [Neisseria meningitidis NM255]
gi|402318181|gb|EJU53706.1| poly(A) polymerase [Neisseria meningitidis NM255]
Length = 453
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|359689371|ref|ZP_09259372.1| tRNA nucleotidyltransferase [Leptospira licerasiae serovar Varillal
str. MMD0835]
Length = 490
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 122/219 (55%), Gaps = 11/219 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
+ + MI + + ++ L G++AY+VGG VRDLLL R PKDFDV+T A QI++ F+
Sbjct: 34 VRKTMIDEDAVKIIHRLHKFGYKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNN 93
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRW 177
IIGRRF I + KG VIEVS+F ++ +H GK + ++ +G + D R
Sbjct: 94 CRIIGRRFKIVHILFKGKVIEVSTFRSLPEHRFGKPVEDQDYLIKRDNKFGTPQEDAAR- 152
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTIN+L++D + I DY G D++ +LR + +SF ED R+LR ++
Sbjct: 153 -----RDFTINALYYDIRNDSIVDYVGGYEDIQGRQLRVIGNPDISFREDPVRMLRAVKF 207
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
A LGL K ++ +E+ SR++ E N +
Sbjct: 208 AVLLGLKIDKGTSRSIKKNVHELEKASSSRMLEEYNKIF 246
>gi|307132158|ref|YP_003884174.1| poly(A) polymerase I [Dickeya dadantii 3937]
gi|306529687|gb|ADM99617.1| poly(A) polymerase I [Dickeya dadantii 3937]
Length = 467
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 154/315 (48%), Gaps = 25/315 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R+ I + + VL L G++AYLVGG VRDLLL + PKDFD+ T A +Q+R+ F
Sbjct: 38 AISRSDISENALKVLYRLSKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFR 97
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDE 171
++GRRF + V VIEV++F ET +G +LL +G E
Sbjct: 98 NCRLVGRRFRLAHVMFGPEVIEVATFRGHHEQHQEQETKNAAQQGHNGMLLRDNIFGTIE 157
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF+INSL++ + DY NG++DLR +R + + ED R+
Sbjct: 158 EDAQR------RDFSINSLYYSIADFTVRDYTNGLNDLRQGLIRLIGEPETRYREDPVRM 211
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+LG+ + + L+S + + +R+ E +L G + LL Y
Sbjct: 212 LRAVRFAAKLGMRISPETAEPIPRLASLLHDIPPARLFEESLKLLQAGYGYPTYQLLCEY 271
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD---RPA---DYTLWVGL 345
L + L P + Y G+ T E M++++ N D+ + D PA LW L
Sbjct: 272 QLFQPLFPLISRYFTAN-GESTMER--MIVQVLKNTDQRIQNDMRVNPAFLFSAMLWYPL 328
Query: 346 LSFHQALVSDPQDAF 360
+ Q L + A+
Sbjct: 329 VEHAQKLTQESGLAY 343
>gi|421550390|ref|ZP_15996395.1| poly(A) polymerase [Neisseria meningitidis 69166]
gi|433471140|ref|ZP_20428531.1| poly(A) polymerase family protein [Neisseria meningitidis 68094]
gi|433477325|ref|ZP_20434648.1| poly(A) polymerase family protein [Neisseria meningitidis 70012]
gi|433521667|ref|ZP_20478362.1| poly(A) polymerase family protein [Neisseria meningitidis 61103]
gi|433525857|ref|ZP_20482491.1| poly(A) polymerase family protein [Neisseria meningitidis 69096]
gi|433538717|ref|ZP_20495197.1| poly(A) polymerase family protein [Neisseria meningitidis 70030]
gi|402330605|gb|EJU65952.1| poly(A) polymerase [Neisseria meningitidis 69166]
gi|432209629|gb|ELK65596.1| poly(A) polymerase family protein [Neisseria meningitidis 68094]
gi|432216547|gb|ELK72428.1| poly(A) polymerase family protein [Neisseria meningitidis 70012]
gi|432260440|gb|ELL15699.1| poly(A) polymerase family protein [Neisseria meningitidis 61103]
gi|432262048|gb|ELL17293.1| poly(A) polymerase family protein [Neisseria meningitidis 69096]
gi|432274725|gb|ELL29812.1| poly(A) polymerase family protein [Neisseria meningitidis 70030]
Length = 453
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG +RDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETTA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|237749035|ref|ZP_04579515.1| poly(A) polymerase [Oxalobacter formigenes OXCC13]
gi|229380397|gb|EEO30488.1| poly(A) polymerase [Oxalobacter formigenes OXCC13]
Length = 463
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 133/248 (53%), Gaps = 8/248 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + V++IL+++G+ A++VGG VRDLLL PKDFDV T A +Q++R F
Sbjct: 31 GIDPRLLSNNAVRVVRILQNEGYDAFIVGGAVRDLLLGLKPKDFDVATNATPEQVKRLFK 90
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--LLSQIPYGCDEIDLVRWRN 179
R+ +IGRRF I V +IEV++F + K+ LL +G D R
Sbjct: 91 RAFLIGRRFQIVHVMFGQDLIEVTTFRGASDKPAIKDESGRLLRDNNFGTQSEDAAR--- 147
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFTIN+++++P + DY GI DLR LR + + ED R+LR +R AA
Sbjct: 148 ---RDFTINAMYYNPANQVLLDYHGGIKDLRSKTLRVIGNPEQRYREDPVRMLRIVRFAA 204
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+LG S K + +L+ + + +R+ E+ +L G + S + LR L + LLP
Sbjct: 205 KLGFSIDKTTGAPIAALAPLMNNVPSARLFDEMLKLLMSGHSMSCLKELRARGLHQGLLP 264
Query: 300 FHAAYLDQ 307
L+Q
Sbjct: 265 LLDVALEQ 272
>gi|262199208|ref|YP_003270417.1| poly(A) polymerase [Haliangium ochraceum DSM 14365]
gi|262082555|gb|ACY18524.1| poly(A) polymerase [Haliangium ochraceum DSM 14365]
Length = 495
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 114/223 (51%), Gaps = 6/223 (2%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ L G +AYLVGGCVRDLLL R PKDFDV T+A QIR F IIGRRF +
Sbjct: 28 VVRRLTRHGHKAYLVGGCVRDLLLDRNPKDFDVATSATPNQIRDIFRNCRIIGRRFRLAH 87
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IE S+F KH + E ++ +G D R RDFTIN LF+D
Sbjct: 88 VFFGDKIIETSTFRASPKHDDEGELLIRHDNVFGSATEDARR------RDFTINGLFYDV 141
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
++ DY G DL +RT+ + F ED R+LR ++ AARLG + A+
Sbjct: 142 RAEEVIDYVGGADDLDSRLVRTIGDPDIRFREDPVRMLRAIKFAARLGFDIEEQTYEALV 201
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
I + R+ E+ +L GAA S+ LL + +L
Sbjct: 202 RHRDEIRKCSPVRVGEEVYRLLRGGAARRSMELLHETGIDVVL 244
>gi|253999870|ref|YP_003051933.1| poly(A) polymerase [Methylovorus glucosetrophus SIP3-4]
gi|253986549|gb|ACT51406.1| poly(A) polymerase [Methylovorus glucosetrophus SIP3-4]
Length = 455
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 144/281 (51%), Gaps = 17/281 (6%)
Query: 79 LKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIK 138
L+ GF+A++VGG VRDLLL++ PKDFDV T A +Q+ R F RS IIGRRF + V
Sbjct: 56 LQKAGFEAFIVGGAVRDLLLKKRPKDFDVATNATPEQVNRVFRRSRIIGRRFRLVHVLFG 115
Query: 139 GSVIEVSSFETVAKHGEGKETV-----LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFD 193
+EVS+F + +G + +L +G E D +R RDFT N+L++D
Sbjct: 116 DETVEVSTFRGSHLNDDGDAKIADSGRILRDNVFGSQEDDALR------RDFTANALYYD 169
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P + D+ +G D++ LR + + ED R+LR +R++A+LGL K + +
Sbjct: 170 PSSEDVLDFHHGYEDIQAGILRMIGDPVTRYREDPVRMLRAIRLSAKLGLKLDKATEAPI 229
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKIT 313
L+ ++ + SR+ E+ + G A S+ LR++ L LLP L+Q G+
Sbjct: 230 PKLADELQEVPASRLFDEMLKLFLSGHAMESVKALRQHGLHHGLLPLLDVVLEQPMGE-- 287
Query: 314 AENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVS 354
+ N D+ V D+P + L +H+ L +
Sbjct: 288 ----RFVTLALKNTDERVLQDKPVSPSFLFATLLWHEVLTA 324
>gi|304387847|ref|ZP_07370021.1| poly(A) polymerase [Neisseria meningitidis ATCC 13091]
gi|304338112|gb|EFM04248.1| poly(A) polymerase [Neisseria meningitidis ATCC 13091]
Length = 502
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 132/244 (54%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 68 VIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 127
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 128 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 181
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++++LG ++
Sbjct: 182 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLGFELSEETAA--- 238
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 239 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 298
Query: 310 GKIT 313
GK+T
Sbjct: 299 GKMT 302
>gi|152979389|ref|YP_001345018.1| poly(A) polymerase [Actinobacillus succinogenes 130Z]
gi|150841112|gb|ABR75083.1| poly(A) polymerase [Actinobacillus succinogenes 130Z]
Length = 421
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/252 (34%), Positives = 133/252 (52%), Gaps = 18/252 (7%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EI 125
MI + + V++ L G++AY+VGGC+RDLLL + PKDFDV T A +QI+ F R +
Sbjct: 1 MISKNALTVVEKLNRNGYEAYIVGGCLRDLLLGKKPKDFDVATNARPEQIQTVFQRQCRL 60
Query: 126 IGRRFPICRVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVR 176
+GRRF + V VIEV++F A H E K + +LL YG E D R
Sbjct: 61 VGRRFRLAHVMFGRDVIEVATFR--AHHAESKNENQARRNEDGMLLRDNVYGTLEQDAER 118
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFT+N+L+++P N I+DY +GI DL+ KLR + + ED R+LR +R
Sbjct: 119 ------RDFTVNALYYNPKDNTIHDYYHGIEDLKAGKLRLIGDPATRYQEDPVRMLRSIR 172
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A+L + K + + L+ ++ + +R+ E +L GA + L+ Y L
Sbjct: 173 FMAKLDMFLDKPSEEPIRKLAPLLKNIPPARLFDESLKLLQAGAGLKTYRLMCEYGLFDQ 232
Query: 297 LLPFHAAYLDQQ 308
L P Y ++
Sbjct: 233 LFPALMPYFTEK 244
>gi|421557057|ref|ZP_16002966.1| poly(A) polymerase [Neisseria meningitidis 80179]
gi|421558572|ref|ZP_16004450.1| poly(A) polymerase [Neisseria meningitidis 92045]
gi|402335742|gb|EJU71006.1| poly(A) polymerase [Neisseria meningitidis 80179]
gi|402337315|gb|EJU72563.1| poly(A) polymerase [Neisseria meningitidis 92045]
Length = 453
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETTA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|88810481|ref|ZP_01125738.1| polyA polymerase [Nitrococcus mobilis Nb-231]
gi|88792111|gb|EAR23221.1| polyA polymerase [Nitrococcus mobilis Nb-231]
Length = 475
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 128/251 (50%), Gaps = 13/251 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+RA I + + VL L G+ AYLVGG VRDL L R PKDFDV T A +Q+++ F
Sbjct: 60 GISRANISRNALKVLYRLNKAGYAAYLVGGGVRDLSLGREPKDFDVATDARPEQVKQLFR 119
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV-------LLSQIPYGCDEIDL 174
+IGRRF + V+ +IEV++F + + GE E LL +G E D
Sbjct: 120 NCRLIGRRFRLAHVYFGSEIIEVATFRALQEAGEADEQARVLENGRLLRDNVFGTIEEDA 179
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
+R RDFT+N+L++ + DY G++DLRC LR + A + + ED R+LR
Sbjct: 180 LR------RDFTVNALYYHIADFTLVDYVGGMADLRCGVLRLIGAAEVRYREDPVRMLRA 233
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +LG + A+ ++ + + +R+ E + G + LR Y L
Sbjct: 234 VRFAVKLGFRMHPETAEAIPRMAHLLGHIPPARLFDETLKLFVTGMGLEAFECLRHYGLF 293
Query: 295 KILLPFHAAYL 305
L P A L
Sbjct: 294 GYLFPATEAVL 304
>gi|338733740|ref|YP_004672213.1| poly(A) polymerase [Simkania negevensis Z]
gi|336483123|emb|CCB89722.1| poly(A) polymerase [Simkania negevensis Z]
Length = 414
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 141/257 (54%), Gaps = 9/257 (3%)
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
KT + I +I + +L+ L++ G+ AYLVGG VRDLLL++ PKDFD+ T+A
Sbjct: 5 KTYSKKEHEIDVNLIDPKAIYILEKLRAAGYVAYLVGGGVRDLLLKKRPKDFDISTSARP 64
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEID 173
++I+ F + +IG+RF + V VIEVS+F A E ++ + I +G E D
Sbjct: 65 EEIKALFPSAILIGKRFRLAHVRFGRKVIEVSTFR--AGDIENEQLITEDNI-WGSPEQD 121
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
++R RDFTIN LF+D ++ DY G +D++ LR + YL F +D R++R
Sbjct: 122 VLR------RDFTINGLFYDCATEEVIDYVGGYADIQKKYLRAIGQPYLRFKQDPVRMIR 175
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
L+ AR G ++ A+ I + ++R++ EL ML G+A S L+ + L
Sbjct: 176 CLKFQARYGFEVDEEARQALIDCKKDIVKSSQARVLEELLRMLESGSASSFFKLMTDHGL 235
Query: 294 LKILLPFHAAYLDQQAG 310
L+ L+P A +L+ G
Sbjct: 236 LQQLIPTLAEFLEMPEG 252
>gi|170719922|ref|YP_001747610.1| poly(A) polymerase [Pseudomonas putida W619]
gi|169757925|gb|ACA71241.1| poly(A) polymerase [Pseudomonas putida W619]
Length = 462
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 126/245 (51%), Gaps = 19/245 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+ G+QAYLVGGCVRDL+L PKDFDV T+A +Q+R +F + IIGRRF +
Sbjct: 45 IVERLQGAGYQAYLVGGCVRDLMLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHR 183
VH +IEV++F A H E + +L YG E D R R
Sbjct: 105 VHFGREIIEVATFR--AHHSEDDQGDSHRSSHNASGRILRDNVYGSLEEDAQR------R 156
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+L++DP ++ DYANG+ D+R LR + + ED R+LR +R AA+L
Sbjct: 157 DFTINALYYDPVSERVLDYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDF 216
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
K + L+ + + +R+ E + G +L L + L P A
Sbjct: 217 GIEKHTFQPIRGLAPLLREIPPARLFEECLKLFLSGQGAIVFEMLVDLALFEPLFPASAH 276
Query: 304 YLDQQ 308
L+++
Sbjct: 277 ALEER 281
>gi|226940321|ref|YP_002795395.1| PcnB [Laribacter hongkongensis HLHK9]
gi|226715248|gb|ACO74386.1| PcnB [Laribacter hongkongensis HLHK9]
Length = 450
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 134/251 (53%), Gaps = 8/251 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
G+ R + + V L+ GF+AY+VGG VRDLL+ PKDFDV T A +++ R F
Sbjct: 32 GVRRDQVSPSALKVTSRLQEAGFEAYVVGGAVRDLLIGHEPKDFDVATNATPEEVHRLFR 91
Query: 122 RSEIIGRRFPICRVHI-KGSVIEVSSFETVAKHGEGKETV-LLSQIPYGCDEIDLVRWRN 179
RS IIGRRF I V + VIEV++F + + E+ ++S YG D
Sbjct: 92 RSRIIGRRFRIVHVVFGRDEVIEVTTFRGDGRDLQTTESGRIISDNSYGSMADD------ 145
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
S RDFT N+L+++P I+DY +G+ D+ +L + + ED R+LR +R+AA
Sbjct: 146 SRRRDFTANALYYNPADESIHDYHHGVRDVTARRLVMIGQPIERYKEDPVRMLRAVRLAA 205
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+LG S + + L+ + + ++R+ E+ ML GA+ + + LR L K + P
Sbjct: 206 KLGFSIDESTRKPISHLAPLLRDVAQARLFDEMLKMLHSGASWACLTRLRAEGLHKGIFP 265
Query: 300 FHAAYLDQQAG 310
A LDQ G
Sbjct: 266 LLDAVLDQPDG 276
>gi|333376150|ref|ZP_08467942.1| poly(A) polymerase [Kingella kingae ATCC 23330]
gi|332968885|gb|EGK07932.1| poly(A) polymerase [Kingella kingae ATCC 23330]
Length = 461
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 132/231 (57%), Gaps = 16/231 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL+ L GF+AYLVGG VRDLLL PKDFDV T A +Q+ R F RS +IGRRFPI
Sbjct: 58 VLRDLHQAGFEAYLVGGAVRDLLLGVEPKDFDVATNATPEQVYRLFKRSRVIGRRFPIVH 117
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V I IEVS+F + K + + ++ + YG E D R RDFT N+L++D
Sbjct: 118 VMIGRDTIEVSTFRSGGKVKQNADGRIMQDVAYGTVEQDAHR------RDFTCNALYYDI 171
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
F ++ D+ G++D++ +L + + ED RILR +R+A + LSF + +TA
Sbjct: 172 FRQEVLDFHQGVNDIQARRLVMIGDPKARYMEDPVRILRAIRLAGK--LSFEVEANTAA- 228
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKIL-LPFH 301
L+ + L K SR+ EL +L G A S C L+++++L I +P H
Sbjct: 229 PLAECVVLLRKEPVSRLFDELMKILFSGNA--SGC-LQQFHVLGIQNIPIH 276
>gi|339495418|ref|YP_004715711.1| poly(A) polymerase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338802790|gb|AEJ06622.1| poly(A) polymerase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 463
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 137/264 (51%), Gaps = 20/264 (7%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+ SR + R I + + V++ L+ G++AY+VGGCVRDLLL+ PKD+DV T+A +Q
Sbjct: 26 LSSRQHSLHRNEISRHAVSVVERLQQAGYEAYVVGGCVRDLLLQLNPKDYDVATSATPEQ 85
Query: 116 IRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE------------GKETVLLS 163
+R +F + +IGRRF + VH +IEV++F A H E + +L
Sbjct: 86 VRAEFRNARVIGRRFKLVHVHFGREIIEVATFR--ANHPEEDDEDASQLASRNESGRILR 143
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D R RDFTIN+L++DP +I D+ G+ D+R +R +
Sbjct: 144 DNVYGTLEDDAQR------RDFTINALYYDPTSERILDHTRGVHDIRNRLIRLIGDPEQR 197
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R AA+L + + L+ ++ + +R+ E + G AE
Sbjct: 198 YQEDPVRMLRAVRFAAKLDFEIERHSAEPIADLAELLDGIPSARLFDETLKLFLGGKAER 257
Query: 284 SICLLRRYNLLKILLPFHAAYLDQ 307
+ LL Y+L L P A L++
Sbjct: 258 TFELLLEYDLFAPLFPASATALER 281
>gi|53803591|ref|YP_114728.1| poly(A) polymerase [Methylococcus capsulatus str. Bath]
gi|53757352|gb|AAU91643.1| polyA polymerase [Methylococcus capsulatus str. Bath]
Length = 438
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 125/241 (51%), Gaps = 10/241 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+RA+I + VL L+ G+QAYLVGGCVRDLLL R PKDFDV+T A+ ++I+ F
Sbjct: 54 ISRALISDNALKVLYRLRKAGYQAYLVGGCVRDLLLGREPKDFDVVTDAHPEEIKAVFRN 113
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + VH +IEV++F + + + +L YG E D R
Sbjct: 114 CRLIGRRFRLAHVHFGEEIIEVATFRALTREPHDEHVTEGGRILRDNVYGTIEEDAFR-- 171
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT+N+L+++ + DY G+ D R LR + + ED R+LR +R A
Sbjct: 172 ----RDFTVNALYYNISDFSVIDYVGGMDDHRNASLRLIGDPEQRYREDPVRMLRAIRFA 227
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
+LG + +H L+ + + +R+ E+ + G A + LR + L L
Sbjct: 228 VKLGFTLHPSCAEPIHRLADLLRDIPAARLYDEIVKLFLAGYAVQTFEQLRHFRLFGSLF 287
Query: 299 P 299
P
Sbjct: 288 P 288
>gi|52841768|ref|YP_095567.1| poly(A) polymerase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378777403|ref|YP_005185840.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|52628879|gb|AAU27620.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|364508217|gb|AEW51741.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila
ATCC 43290]
Length = 436
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 142/288 (49%), Gaps = 15/288 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I++A I + VL L S GFQAY+VGG VRDLLL + PKDFD+ T A +++ F
Sbjct: 25 ISKADISNNALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKN 84
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWR 178
+ IIGRRF + + +IEV++F + A H + +L+ YG +D WR
Sbjct: 85 ARIIGRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGS--LDEDAWR 142
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFTINSL+++ + I D+ G+ D++ +R + + ED R+LR +R +
Sbjct: 143 ----RDFTINSLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFS 198
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + + +S I + SR+ E+ + G AES LL Y L L
Sbjct: 199 AKLQFNLSPETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLF 258
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA D NP++ + L N D + +P + +L
Sbjct: 259 PQTAALFDSH----YPVNPLLGIAL-ENTDTRIRDGKPVTPAFLIAVL 301
>gi|397667160|ref|YP_006508697.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila]
gi|395130571|emb|CCD08816.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila]
Length = 423
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 142/288 (49%), Gaps = 15/288 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I++A I + VL L S GFQAY+VGG VRDLLL + PKDFD+ T A +++ F
Sbjct: 12 ISKADISNNALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKN 71
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWR 178
+ IIGRRF + + +IEV++F + A H + +L+ YG +D WR
Sbjct: 72 ARIIGRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGS--LDEDAWR 129
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFTINSL+++ + I D+ G+ D++ +R + + ED R+LR +R +
Sbjct: 130 ----RDFTINSLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFS 185
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + + +S I + SR+ E+ + G AES LL Y L L
Sbjct: 186 AKLQFNLSPETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLF 245
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA D NP++ + L N D + +P + +L
Sbjct: 246 PQTAALFDSH----YPVNPLLSIAL-ENTDTRIRDGKPVTPAFLIAVL 288
>gi|54297450|ref|YP_123819.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella
pneumophila str. Paris]
gi|53751235|emb|CAH12646.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
pneumophila str. Paris]
Length = 423
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 143/288 (49%), Gaps = 15/288 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I++A I + VL L S GFQAY+VGG VRDLLL + PKDFD+ T A +++ F
Sbjct: 12 ISKADISNNALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKN 71
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWR 178
+ IIGRRF + + +IEV++F + A H + +L+ YG +D WR
Sbjct: 72 ARIIGRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGS--LDEDAWR 129
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFTINSL+++ + I D+ +G+ D++ +R + + ED R+LR +R +
Sbjct: 130 ----RDFTINSLYYNISDSSIIDFTSGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFS 185
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + + +S I + SR+ E+ + G AES LL Y L L
Sbjct: 186 AKLQFNLSPETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLF 245
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA D NP++ + L N D + +P + +L
Sbjct: 246 PQTAALFDSH----YPVNPLLGIAL-ENTDTRIRDGKPVTPAFLIAVL 288
>gi|288942459|ref|YP_003444699.1| poly(A) polymerase [Allochromatium vinosum DSM 180]
gi|288897831|gb|ADC63667.1| poly(A) polymerase [Allochromatium vinosum DSM 180]
Length = 445
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 150/303 (49%), Gaps = 17/303 (5%)
Query: 41 SDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRR 100
SD + + + V I+RA I + + VL L+ + FQA+LVGG VRDLLL
Sbjct: 4 SDPHSAPIRPGQPRVVPRPEHNISRANISEQALRVLYRLRQENFQAHLVGGGVRDLLLGH 63
Query: 101 VPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFE-TVAKHGEG--- 156
PKDFDV T A +Q+R+ F +IGRRF + VH +IEV++F + + GE
Sbjct: 64 EPKDFDVATDATPEQVRQVFRNCRLIGRRFRLAHVHFGRDIIEVATFRGSGSDDGEDADR 123
Query: 157 --KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKL 214
++ +++ YG E D +R RDFTIN+L++D + DYA GI DLR +L
Sbjct: 124 QMRDGLIVRDNIYGSIEEDALR------RDFTINALYYDIADFALIDYAGGIDDLRAGRL 177
Query: 215 RTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNY 274
R + + ED R+LR +R A +LG + + + L + + +R+ EL
Sbjct: 178 RLIGDPVKRYREDPVRMLRAVRFACKLGFTIEPATERPLFELGHLLRDIPAARLFDELLK 237
Query: 275 MLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLM-RLFFNLDKLVSC 333
+ G LR Y L L P A L ++ + P+ + R N DK ++
Sbjct: 238 LFHSGYGLEVFEKLRHYGLFGHLFPATEACLARE----DHDFPITFVSRGLTNTDKRLAE 293
Query: 334 DRP 336
D+P
Sbjct: 294 DKP 296
>gi|383310546|ref|YP_005363356.1| polyA polymerase [Pasteurella multocida subsp. multocida str. HN06]
gi|380871818|gb|AFF24185.1| polyA polymerase [Pasteurella multocida subsp. multocida str. HN06]
Length = 424
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 149/276 (53%), Gaps = 21/276 (7%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EI 125
MI + + +++ L GF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R +
Sbjct: 1 MINRNALGIVEKLHRHGFEAYIVGGCLRDLLLGKHPKDFDVATNALPEQIQTIFQRQCRL 60
Query: 126 IGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDEIDLVR 176
+GRRF + + VIEV++F E++AK + KE +LL YG E D R
Sbjct: 61 VGRRFRLAHIMFGRDVIEVATFRASHNENNHESLAK--QSKEGMLLRDNVYGTLEQDAER 118
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFT+N+L+++P N + DY +GI DL+ KLR + + ED R+LR +R
Sbjct: 119 ------RDFTVNALYYNPQDNTLRDYFHGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSVR 172
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A+L + K + + L+ ++ + +R+ E +L G + LLR+Y L +
Sbjct: 173 FMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDECLKLLQAGYGVKTYKLLRQYGLFEQ 232
Query: 297 LLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVS 332
L P Y ++ G AE M+++ + D+ V+
Sbjct: 233 LFPSLMPYFTEK-GDSLAER--MILKALTSTDERVA 265
>gi|344339516|ref|ZP_08770445.1| poly(A) polymerase [Thiocapsa marina 5811]
gi|343800820|gb|EGV18765.1| poly(A) polymerase [Thiocapsa marina 5811]
Length = 455
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 131/245 (53%), Gaps = 13/245 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+RA I + + VL LK + FQA+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 26 GISRANISENALKVLYRLKQENFQAHLVGGGVRDLLLGHEPKDFDVATDATPEQVRQVFR 85
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFE--TVAKHGEGKETVL-----LSQIPYGCDEIDL 174
+IGRRF + VH +IEV++F TVA G+ + + L YG D
Sbjct: 86 NCRLIGRRFRLAHVHFGREIIEVATFRGTTVASEGDDNDRQMENGRILRDNTYGTIAEDA 145
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
+R RDFT+N+L+++ + DYA+G+ D++ +LR + + ED R+LR
Sbjct: 146 LR------RDFTVNALYYNIADFSLIDYADGLEDIKAGRLRLIGDPEQRYREDPVRMLRA 199
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +LG + + + + +L+ + + +R+ EL + G LR+Y L
Sbjct: 200 VRFACKLGFTIERQTEEPLFNLAHLLADIAPARLFDELIKLFHSGYGLGVFEKLRQYGLF 259
Query: 295 KILLP 299
L P
Sbjct: 260 GELFP 264
>gi|307610237|emb|CBW99798.1| poly(A) polymerase [Legionella pneumophila 130b]
Length = 423
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 142/288 (49%), Gaps = 15/288 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I++A I + VL L S GFQAY+VGG VRDLLL + PKDFD+ T A +++ F
Sbjct: 12 ISKADISNNALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKN 71
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWR 178
+ IIGRRF + + +IEV++F + A H + +L+ YG +D WR
Sbjct: 72 ARIIGRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGS--LDEDAWR 129
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFTINSL+++ + I D+ G+ D++ +R + + ED R+LR +R +
Sbjct: 130 ----RDFTINSLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFS 185
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + + +S I + SR+ E+ + G AES LL Y L L
Sbjct: 186 AKLQFNLSPETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLF 245
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA D NP++ + L N D + +P + +L
Sbjct: 246 PQTAALFDSH----YPVNPLLGIAL-ENTDTRIRDGKPVTPAFLIAVL 288
>gi|372488180|ref|YP_005027745.1| poly(A) polymerase [Dechlorosoma suillum PS]
gi|359354733|gb|AEV25904.1| poly(A) polymerase [Dechlorosoma suillum PS]
Length = 461
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/337 (30%), Positives = 160/337 (47%), Gaps = 34/337 (10%)
Query: 35 MCREMCSDSFNQEVDVSNWKTVDSR--------------NLGITRAMIPQPSWVVLKILK 80
M R++ S F + + +T ++R N GI R + + ++ L+
Sbjct: 1 MIRKLISRVFGGKNNAGKSETRNARSGGHGDSAAIIPVKNHGIRREQLSSGARRTVEGLQ 60
Query: 81 SQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGS 140
G++AY+VGG VRDLL PKDFDV T A +Q+R F RS IIGRRF I V +
Sbjct: 61 KAGYKAYVVGGAVRDLLAGIPPKDFDVATNATPEQVRACFRRSRIIGRRFQIVHVMMGAE 120
Query: 141 VIEVSSFETVAKHGEGKET-----VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPF 195
+EV++F + H T VL + +G D R RDFT+N+L++DP
Sbjct: 121 TLEVTTFRAI--HASNAPTDEHGRVLRDNV-FGTMAEDAAR------RDFTVNALYYDPA 171
Query: 196 LNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHS 255
I+DY +G++DL+ LR + + + ED R+LR +R+ A+L L+ +
Sbjct: 172 DETIHDYHHGVADLKQKTLRMIGDPKVRYREDPVRMLRAVRLGAKLNLAIDPAARRPIRE 231
Query: 256 LSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAE 315
+S IE + +R+ E+ +L+ G A + LR L LLP L+Q G+
Sbjct: 232 MSELIENVPPARLFDEMLKLLTSGYAVRCVKQLREEGLHHGLLPLLDVILEQPLGE---- 287
Query: 316 NPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
+M N D+ V +P L +H+ L
Sbjct: 288 --RFVMLALANTDERVQAGKPTSPGFLFATLLWHEVL 322
>gi|335042334|ref|ZP_08535361.1| tRNA nucleotidyltransferase/poly polymerase [Methylophaga
aminisulfidivorans MP]
gi|333788948|gb|EGL54830.1| tRNA nucleotidyltransferase/poly polymerase [Methylophaga
aminisulfidivorans MP]
Length = 403
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 137/262 (52%), Gaps = 15/262 (5%)
Query: 79 LKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIK 138
+K G++AYLVGGCVRDLLL PKDFDV T A+ +Q+ + F RS++IGRRF + V
Sbjct: 1 MKEAGYEAYLVGGCVRDLLLGYEPKDFDVATNASPEQVHKLFKRSQLIGRRFKLVHVRFG 60
Query: 139 GSVIEVSSFET---VAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPF 195
VIEV++F +H + + ++ + YG E D WR RDFTIN+L+++
Sbjct: 61 REVIEVATFRAPPEAKQHVDTQGRIMQDNV-YGTLEQDA--WR----RDFTINALYYNIK 113
Query: 196 LNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHS 255
I DY G++DL +R + + ED R+LR R A+LGL K + +
Sbjct: 114 DFSIIDYTGGMADLNAGLIRLIGDVETRYREDPVRMLRACRFLAKLGLKLDKQTEQGIFD 173
Query: 256 LSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL-DQQAGKITA 314
+ I + +R+ E + G A + LL Y L + L P AA L ++Q G
Sbjct: 174 WAHLIRDIPPARLFDETLKLYLSGQAGMTHDLLCHYGLFEHLYPQTAALLHEEQDGYPRT 233
Query: 315 ENPMMLMRLFFNLDKLVSCDRP 336
MLM+ N D ++ D+P
Sbjct: 234 ----MLMKALENTDIRIAADKP 251
>gi|313668687|ref|YP_004048971.1| poly(A) polymerase [Neisseria lactamica 020-06]
gi|313006149|emb|CBN87610.1| putative poly(A) polymerase [Neisseria lactamica 020-06]
Length = 453
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|297180697|gb|ADI16906.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured gamma
proteobacterium HF0010_16J05]
Length = 435
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 124/227 (54%), Gaps = 8/227 (3%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ L + GF A LVGGC+RD L PKDFDV T A L +++R F RS I+GRRFPI
Sbjct: 53 VIQQLNAHGFTALLVGGCIRDALCGVQPKDFDVATDAPLDEVKRIFRRSRIVGRRFPIAH 112
Query: 135 VHIKGSVIEVSSF-ETVAKHGE-GKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
V ++IEVS+F ++V+++ E + ++L YG + D R RDF+IN+L+F
Sbjct: 113 VRYGRNLIEVSTFRQSVSENIEHDAQGMILRDKAYGTLQEDAFR------RDFSINALYF 166
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
DP N+I DY G+ DL +++ + + ED RILR +R A +LG S I
Sbjct: 167 DPNKNEIIDYVGGLEDLAAGEVKLIGDPAVRLAEDPVRILRAVRFANKLGFSLDPRIIEL 226
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ + + +R+ E M G E+ +R + ++L P
Sbjct: 227 FEDSARRLTAIPPARLFDEFLKMFLTGCGENIWQHIRHTGIARVLFP 273
>gi|148359072|ref|YP_001250279.1| oly(A) polymerase [Legionella pneumophila str. Corby]
gi|296107120|ref|YP_003618820.1| poly(A) polymerase [Legionella pneumophila 2300/99 Alcoy]
gi|148280845|gb|ABQ54933.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
pneumophila str. Corby]
gi|295649021|gb|ADG24868.1| poly(A) polymerase [Legionella pneumophila 2300/99 Alcoy]
Length = 423
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 142/288 (49%), Gaps = 15/288 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I++A I + VL L S GFQAY+VGG VRDLLL + PKDFD+ T A +++ F
Sbjct: 12 ISKADISNNALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKN 71
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWR 178
+ IIGRRF + + +IEV++F + A H + +L+ YG +D WR
Sbjct: 72 ARIIGRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGS--LDEDAWR 129
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFTINSL+++ + I D+ G+ D++ +R + + ED R+LR +R +
Sbjct: 130 ----RDFTINSLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFS 185
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + + +S I + SR+ E+ + G AES LL Y L L
Sbjct: 186 AKLQFNLSPETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLF 245
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA D NP++ + L N D + +P + +L
Sbjct: 246 PQTAALFDSH----YPVNPLLGIAL-ENTDTRIRDGKPVTPAFLIAVL 288
>gi|54294419|ref|YP_126834.1| poly(A) polymerase [Legionella pneumophila str. Lens]
gi|53754251|emb|CAH15728.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
pneumophila str. Lens]
Length = 423
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 142/288 (49%), Gaps = 15/288 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I++A I + VL L S GFQAY+VGG VRDLLL + PKDFD+ T A +++ F
Sbjct: 12 ISKADISNNALKVLNRLISHGFQAYIVGGSVRDLLLHKAPKDFDIATNATPNEVKNLFKN 71
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWR 178
+ IIGRRF + + +IEV++F + A H + +L+ YG +D WR
Sbjct: 72 ARIIGRRFKLVHILFHREIIEVATFRGHNSSDASHQFNERGMLVRDNVYGS--LDEDAWR 129
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFTINSL+++ + I D+ G+ D++ +R + + ED R+LR +R +
Sbjct: 130 ----RDFTINSLYYNISDSSIIDFTGGVEDVKQKLIRIIGDPVTRYQEDPVRMLRAVRFS 185
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + + +S I + SR+ E+ + G AES LL Y L L
Sbjct: 186 AKLQFNLSPETKAPFPKISHLITHVSSSRLFDEITKLYQCGEAESVQKLLVEYGLFNYLF 245
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA D NP++ + L N D + +P + +L
Sbjct: 246 PQTAALFDSH----YPVNPLLGIAL-ENTDTRIRDGKPVTPAFLIAVL 288
>gi|398336383|ref|ZP_10521088.1| tRNA nucleotidyltransferase [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 479
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 126/237 (53%), Gaps = 11/237 (4%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEII 126
MI + + ++ L GF+AY+VGG VRDLLL R PKDFDV+T A QI++ F+ II
Sbjct: 1 MIDEDAVKIIHRLNKFGFKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNNCRII 60
Query: 127 GRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRWRNSI 181
GRRF I + +G VIEVS+F ++ + GK + ++ +G + D R
Sbjct: 61 GRRFKIVHILFRGKVIEVSTFRSLPDYRLGKAVEDQDYLIKRDNKFGTPQEDAAR----- 115
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFTINSL++D + I DY G D++ LR + +SF ED R+LR ++ A L
Sbjct: 116 -RDFTINSLYYDVRNDSIIDYVGGFEDIQNKVLRVIGDPDISFREDPVRMLRAVKFAEIL 174
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
GL+ K A+ +E+ SR++ E N + + + LL++L
Sbjct: 175 GLNIEKTTAKAIRKHKIELEKASSSRMLEEYNKIFRTWKTSLIFQGMAEHGLLEVLF 231
>gi|323491995|ref|ZP_08097160.1| poly(A) polymerase [Vibrio brasiliensis LMG 20546]
gi|323313724|gb|EGA66823.1| poly(A) polymerase [Vibrio brasiliensis LMG 20546]
Length = 455
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 128/251 (50%), Gaps = 16/251 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF+AYLVGG VRDLLL + PKDFD+ T A +QIR+ F
Sbjct: 31 ISRKQISDNALKVLYRLHGAGFEAYLVGGGVRDLLLSQQPKDFDIATNATPEQIRQLFKN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEIDL 174
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEPSKNVSQQSKEGMLLRDNVYGTIDEDA 148
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 149 ER------RDFTVNAMYYNIGDYSIHDYAGGIEDLEDKLIRLIGDPDTRYREDPVRMLRA 202
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L +D + L++ ++ + +R+ E ML G + L+R YNL
Sbjct: 203 IRFAVKLDFDIEEDTAAPIEELATLLQEIPAARLYEESLKMLQSGHGLETYHLMREYNLF 262
Query: 295 KILLPFHAAYL 305
+ L P A +
Sbjct: 263 QQLFPTIAEFF 273
>gi|407458358|ref|YP_006736663.1| poly(A) polymerase family protein [Chlamydia psittaci WS/RT/E30]
gi|405785292|gb|AFS24038.1| poly(A) polymerase family protein [Chlamydia psittaci WS/RT/E30]
Length = 428
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G +AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 48 VIKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E L+++ +G E D++R RDFTIN LF+D
Sbjct: 108 IRFSNQIIEVSTFRS----GSADEDCLITKDNLWGTAEEDVLR------RDFTINGLFYD 157
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+SDL LRT+ ++ F +D R+LR L+I AR + A+
Sbjct: 158 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEAL 217
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + ++R+ EL ML G + L +Y +L+IL P+
Sbjct: 218 QECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFPY 264
>gi|359437332|ref|ZP_09227400.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20311]
gi|359444800|ref|ZP_09234567.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20439]
gi|358027998|dbj|GAA63649.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20311]
gi|358041369|dbj|GAA70816.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20439]
Length = 432
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 147/281 (52%), Gaps = 15/281 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R + VL LK G+ AYLVGGC+RD+LL + PKDFDV+T A +Q+++ F
Sbjct: 8 GISRKQFSPNAIKVLYRLKDGGYDAYLVGGCIRDVLLGQQPKDFDVVTNATPEQVKKLFR 67
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVR----- 176
+IGRRF + + +IEV+ T+ H E +E +QI + L+R
Sbjct: 68 NCRLIGRRFRLAHIVFGREIIEVA---TMRGHHEAQEDK--NQISQSSEHGQLLRDNVFG 122
Query: 177 --WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDF+IN+L++ +YDYANG++ ++ ++ + + ED R+LR
Sbjct: 123 SIEEDAERRDFSINALYYSINDFCVYDYANGLAAIKAKQIELIGDPETRYREDPVRMLRA 182
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + + + L+S ++ + +R+ E+ + G A+ + +LR+Y L
Sbjct: 183 VRFATKLDMQIAPSSEKPITELASLLDNIPPARLFEEILKLFLNGKAQQNFIMLRQYGLF 242
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
K L P LD+ G + + ++F N D ++ D+
Sbjct: 243 KSLFPELDRILDKNPGGL---EETFIKQMFANTDIRINADK 280
>gi|253997249|ref|YP_003049313.1| poly(A) polymerase [Methylotenera mobilis JLW8]
gi|253983928|gb|ACT48786.1| poly(A) polymerase [Methylotenera mobilis JLW8]
Length = 480
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 147/299 (49%), Gaps = 22/299 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I R ++ + ++ L+ GF+AY+VGG VRDLLL+R PKDFDV T A +++ R F R
Sbjct: 66 IDRRLLSNAAIKTIEGLQKAGFEAYIVGGAVRDLLLQREPKDFDVATDATPEEVNRVFRR 125
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV-------LLSQIPYGCDEIDLV 175
S IIGRRF + V IEVS+F H E K ++ +G E D
Sbjct: 126 SRIIGRRFRLVHVLFGDETIEVSTFR---GHHEAKGDAHTNESGRIIRDNVFGSLEEDAT 182
Query: 176 RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGL 235
R RDFT N+L++DP + D+ G +D++ LR + + ED R+LR +
Sbjct: 183 R------RDFTANALYYDPTSEIVLDFHQGFADIQAGILRMIGKPETRYAEDPVRMLRVV 236
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R++A+LGL + ++ ++ + SR+ E+ + G A S+ LR +L
Sbjct: 237 RLSAKLGLKIDPATMAPIAKMADLLQDVPPSRLFDEMLKLFLSGHAIESVSALREQHLHH 296
Query: 296 ILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVS 354
LLP L+Q G+ +M N D+ + + A+ + L +H+ L +
Sbjct: 297 GLLPMLDVVLEQPMGE------RFVMLALKNTDERILSGKSANPSFLFATLLWHEVLAA 349
>gi|256829174|ref|YP_003157902.1| poly(A) polymerase [Desulfomicrobium baculatum DSM 4028]
gi|256578350|gb|ACU89486.1| poly(A) polymerase [Desulfomicrobium baculatum DSM 4028]
Length = 424
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 128/252 (50%), Gaps = 9/252 (3%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + V+ L +GF AYLVGG VRDLLL R PKDFDV T A QI++ F
Sbjct: 13 VSRQNIHPDALKVMYRLVRKGFTAYLVGGGVRDLLLGRTPKDFDVSTNATPSQIKKIFQN 72
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--GKETV-LLSQIPYGCDEIDLVRWRN 179
+IGRRF + + VIE S+F E G E + +L YG E D +R
Sbjct: 73 YFLIGRRFRLAHIRFDDHVIETSTFRRCPDQEEENGDEDLYMLRDNCYGTPEEDALR--- 129
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFTIN LF++ I D+ G+SD+ +R + + F ED R++R +R AA
Sbjct: 130 ---RDFTINGLFYEVERFSIIDHVGGLSDIENRLIRCIGDPNIRFREDPVRMIRAVRFAA 186
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
RL A+ I + R+ EL + +YG+ E ++ LL + LL LLP
Sbjct: 187 RLDFHIEPATYNAIMRHHEEILKASPPRVFEELQKLFAYGSGEKAVRLLYKTGLLHNLLP 246
Query: 300 FHAAYLDQQAGK 311
A +LD G+
Sbjct: 247 EIADFLDHDHGQ 258
>gi|255021401|ref|ZP_05293449.1| Poly(A) polymerase [Acidithiobacillus caldus ATCC 51756]
gi|340782254|ref|YP_004748861.1| poly(A) polymerase [Acidithiobacillus caldus SM-1]
gi|254969264|gb|EET26778.1| Poly(A) polymerase [Acidithiobacillus caldus ATCC 51756]
gi|340556407|gb|AEK58161.1| Poly(A) polymerase [Acidithiobacillus caldus SM-1]
Length = 499
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/270 (34%), Positives = 139/270 (51%), Gaps = 22/270 (8%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + VL L G QAYLVGG VRDLLL R PKD+DV T A +Q+R+ F R
Sbjct: 47 LSRRQISSGALQVLNTLHQAGHQAYLVGGSVRDLLLGREPKDYDVATDARPEQVRKLFRR 106
Query: 123 -SEIIGRRFPICRVHIKGSVIEVSSF--------ETVAKHGEGKETVLLSQIPYGCDEID 173
+ +IGRRF + V ++EV++F ET + G+ +L+ YG E D
Sbjct: 107 NARLIGRRFILVHVQFGPEIVEVATFRGQGESAEETSERSASGR---ILADNVYGSLEED 163
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFT N+L+++ I D+A+G++DL+ +LR + + ED R+LR
Sbjct: 164 AGR------RDFTANALYYNIADRSILDFADGLTDLQAGRLRMIGDPEQRYREDPVRMLR 217
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+LG ++ A+ + + +R+ E + G A+SS LLRR L
Sbjct: 218 AVRFAAKLGFQMDAAVEAAIAPCRDLLLEVPSARLFEETIKLFLTGHAQSSFDLLRRTGL 277
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRL 323
L P LD+ AE+ L+RL
Sbjct: 278 FAALFP----QLDRVLDAADAESARELLRL 303
>gi|421863082|ref|ZP_16294783.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379411|emb|CBX21978.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 453
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 130/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYREDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|418749958|ref|ZP_13306246.1| poly(A) polymerase [Leptospira licerasiae str. MMD4847]
gi|418759290|ref|ZP_13315470.1| poly(A) polymerase [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|384113781|gb|EIE00046.1| poly(A) polymerase [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|404274843|gb|EJZ42161.1| poly(A) polymerase [Leptospira licerasiae str. MMD4847]
Length = 453
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 120/215 (55%), Gaps = 11/215 (5%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEII 126
MI + + ++ L G++AY+VGG VRDLLL R PKDFDV+T A QI++ F+ II
Sbjct: 1 MIDEDAVKIIHRLHKFGYKAYIVGGGVRDLLLGRKPKDFDVVTNATPNQIKKIFNNCRII 60
Query: 127 GRRFPICRVHIKGSVIEVSSFETVAKHGEGK-----ETVLLSQIPYGCDEIDLVRWRNSI 181
GRRF I + KG VIEVS+F ++ +H GK + ++ +G + D R
Sbjct: 61 GRRFKIVHILFKGKVIEVSTFRSLPEHRFGKPVEDQDYLIKRDNKFGTPQEDAAR----- 115
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFTIN+L++D + I DY G D++ +LR + +SF ED R+LR ++ A L
Sbjct: 116 -RDFTINALYYDIRNDSIVDYVGGYEDIQGRQLRVIGNPDISFREDPVRMLRAVKFAVLL 174
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
GL K ++ +E+ SR++ E N +
Sbjct: 175 GLKIDKGTSRSIKKNVHELEKASSSRMLEEYNKIF 209
>gi|62185370|ref|YP_220155.1| poly(A) polymerase [Chlamydophila abortus S26/3]
gi|62148437|emb|CAH64205.1| putative poly(A) polymerase [Chlamydophila abortus S26/3]
Length = 428
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G +AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 48 VVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E L+++ +G E D++R RDFTIN LF+D
Sbjct: 108 IRFSNQIIEVSTFRS----GSADEDCLITKDNLWGTAEEDVLR------RDFTINGLFYD 157
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+SDL LRT+ ++ F +D R+LR L+I AR + A+
Sbjct: 158 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEAL 217
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + ++R+ EL ML G + L +Y +L+IL P+
Sbjct: 218 QECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFPY 264
>gi|424825411|ref|ZP_18250398.1| putative poly(A) polymerase [Chlamydophila abortus LLG]
gi|333410510|gb|EGK69497.1| putative poly(A) polymerase [Chlamydophila abortus LLG]
Length = 428
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G +AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 48 VVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E L+++ +G E D++R RDFTIN LF+D
Sbjct: 108 IRFSNQIIEVSTFRS----GSADEDCLITKDNLWGTAEEDVLR------RDFTINGLFYD 157
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+SDL LRT+ ++ F +D R+LR L+I AR + A+
Sbjct: 158 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEAL 217
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + ++R+ EL ML G + L +Y +L+IL P+
Sbjct: 218 QECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFPY 264
>gi|416205474|ref|ZP_11620565.1| poly(A) polymerase [Neisseria meningitidis 961-5945]
gi|433466978|ref|ZP_20424435.1| poly(A) polymerase family protein [Neisseria meningitidis 87255]
gi|325142111|gb|EGC64537.1| poly(A) polymerase [Neisseria meningitidis 961-5945]
gi|432203554|gb|ELK59605.1| poly(A) polymerase family protein [Neisseria meningitidis 87255]
Length = 453
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS I+GRRF I
Sbjct: 44 VIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRIVGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|119478378|ref|ZP_01618386.1| poly(A) polymerase [marine gamma proteobacterium HTCC2143]
gi|119448587|gb|EAW29833.1| poly(A) polymerase [marine gamma proteobacterium HTCC2143]
Length = 462
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 133/268 (49%), Gaps = 21/268 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + V+ L+ GF +LVGG VRDLLL PKDFD+ T A +Q+R+ FH
Sbjct: 39 ISRKNISDAALRVMTTLRKAGFAGFLVGGGVRDLLLGGRPKDFDIATDATPEQVRKLFHN 98
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHGEGKET-----------VLLSQIPY 167
S IIGRRF I V +IEV++F E V + +GK +LL +
Sbjct: 99 SRIIGRRFKIVHVRFGREIIEVTTFRGTHEQVEQSPKGKRPQNQNSAQSKNGMLLRDNVF 158
Query: 168 GCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
G E D VR RDFTIN+L++ +YDY +G+ DL +R + + ED
Sbjct: 159 GTVEEDAVR------RDFTINALYYTTADFAVYDYTSGLRDLDEKIIRIIGDPETRYRED 212
Query: 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
R+LR +R AA+L + K+ + L+ S+ + +R+ E+ +L G L
Sbjct: 213 PVRMLRAVRFAAKLNFTIEKNTAKPILRLAPSLADIPAARMFDEVLKLLMSGYGADVYKL 272
Query: 288 LRRYNLLKILLPFHAAYLDQQAGKITAE 315
+++Y L + L P L Q I E
Sbjct: 273 MQQYGLFEPLFPQTQPCLQQPQANILVE 300
>gi|372266931|ref|ZP_09502979.1| poly(A) polymerase [Alteromonas sp. S89]
Length = 486
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 135/262 (51%), Gaps = 13/262 (4%)
Query: 52 NWKTVDSR-NLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITT 110
N +TV +R + ++R + + + V+K L+ GF+AY+VGG VRDLLL PKDFDV T
Sbjct: 48 NTRTVIARGDHCLSRRDVSRAALTVMKRLQEAGFEAYIVGGGVRDLLLGGHPKDFDVATD 107
Query: 111 ANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET------VLLSQ 164
A +Q ++ F + I+GRRF I I VIEV++F GE E +LL
Sbjct: 108 ATPEQAKQLFRGARIVGRRFRILHARIGREVIEVTTFRGHHSDGEAHEAQQSEHGMLLRD 167
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
YG E D VR RDFT+N+L++ +I+DY GI D+ +R + +
Sbjct: 168 NVYGDLESDAVR------RDFTVNALYYTTNGFEIHDYTGGIQDIEQRLIRMIGDPATRY 221
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R AA+L + L+ + + +R+ E+ +L G E +
Sbjct: 222 KEDPVRMLRAVRFAAKLDFDIEPGTAAPLRELAPLLRNIAPARLFDEVLKLLMSGNGERT 281
Query: 285 ICLLRRYNLLKILLPFHAAYLD 306
LLR Y L L P +A L+
Sbjct: 282 FELLREYELWSHLFPDNARMLE 303
>gi|393777714|ref|ZP_10366005.1| poly polymerase [Ralstonia sp. PBA]
gi|392715511|gb|EIZ03094.1| poly polymerase [Ralstonia sp. PBA]
Length = 487
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 146/317 (46%), Gaps = 38/317 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V L+ G++A++VGG VRDLLL PKDFDV T A Q++ F
Sbjct: 34 GIDPTLLSKNAVKVTSTLQEAGYEAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFR 93
Query: 122 RSEIIGRRFPICRVHIKGS----VIEVSSF---------ETVAK-------------HGE 155
RS IIGRRF I V G +IEVS+F E VA H
Sbjct: 94 RSRIIGRRFQIVHVTFYGGREQEIIEVSTFRAMVDAADSEQVASDRRLKRNELDTRTHAT 153
Query: 156 GKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLR 215
+L +G D R RDFTIN++++DP ++DY G+ D+R LR
Sbjct: 154 DASGRVLRDNVWGSQAEDAAR------RDFTINAMYYDPAAQTVHDYHGGMKDIRARVLR 207
Query: 216 TLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYM 275
+ L + ED R+LR +R AA+ G + + ++ L++ I + +R+ E+ +
Sbjct: 208 MIGDPTLRYREDPVRMLRVVRFAAKTGFAIDEATRAPINELATLIHNVPTARVFDEMLKL 267
Query: 276 LSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
L G A +S+ LR+ L + LLP L+Q G+ + N D V +
Sbjct: 268 LLSGHAWASLQELRKAGLHRGLLPLLDVALEQPMGQ------RFVQLALDNTDARVRAGK 321
Query: 336 PADYTLWVGLLSFHQAL 352
P L +H L
Sbjct: 322 PVSPGFLFAALLWHHVL 338
>gi|343498275|ref|ZP_08736314.1| poly(A) polymerase [Vibrio tubiashii ATCC 19109]
gi|418480933|ref|ZP_13049986.1| poly(A) polymerase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342824716|gb|EGU59251.1| poly(A) polymerase [Vibrio tubiashii ATCC 19109]
gi|384571458|gb|EIF01991.1| poly(A) polymerase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 455
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 126/251 (50%), Gaps = 16/251 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF AYLVGG VRDLLL + PKDFD+ T A +QIR+ F
Sbjct: 31 ISRKKISDNALKVLYRLHGAGFDAYLVGGGVRDLLLGQAPKDFDIATNATPEQIRQLFKN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEIDL 174
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEPSKNVSQQSKEGMLLRDNVYGTIDEDA 148
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N++++ I+DYA GI DL +R L + ED R+LR
Sbjct: 149 ER------RDFTVNAMYYSIGDYSIHDYAGGIEDLEDKLIRLLGDPETRYREDPVRMLRA 202
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L +D + LS+ ++ + +R+ E ML G + L+R YNL
Sbjct: 203 IRFAVKLDFDIEEDTAEPIEELSTLLQDIPPARLYEESLKMLQSGHGLETYHLMREYNLF 262
Query: 295 KILLPFHAAYL 305
+ L P A +
Sbjct: 263 QQLFPTIAEFF 273
>gi|331006253|ref|ZP_08329573.1| Poly(A) polymerase [gamma proteobacterium IMCC1989]
gi|330419942|gb|EGG94288.1| Poly(A) polymerase [gamma proteobacterium IMCC1989]
Length = 439
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 150/303 (49%), Gaps = 28/303 (9%)
Query: 66 AMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEI 125
+M P + V+ ++++ GFQAYLVGG +RD LL PKDFDV T A +++++ F + I
Sbjct: 22 SMSPSATRVIDGLVQA-GFQAYLVGGSIRDGLLGCQPKDFDVSTDATPEEVKKVFRNARI 80
Query: 126 IGRRFPICRVHIKGSVIEVSSFETVAKHG----EGKETVLLSQIPYGCDEIDLVRWRNSI 181
IGRRF I V +IEV++F + E LL YG D +R
Sbjct: 81 IGRRFRIVHVRFGREIIEVTTFRGKSSDSSHQVESNTGQLLRDNVYGNMHSDAIR----- 135
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+L++ P +YDY NG+ D++ +LR + + ED R+LR +R +A+L
Sbjct: 136 -RDFTVNALYYSPENGSVYDYTNGVDDIKKRQLRIIGDPLTRYKEDPVRLLRAIRFSAKL 194
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
G + + + + + +R+ E+ + G+A +S LL+ Y LL L P
Sbjct: 195 GFTIEEKTANPIFDNGHLLTHVPPARLFDEILKLFLNGSATASYTLLKDYQLLDALFPAT 254
Query: 302 AAYLDQQA---GKITAENPMMLMRLFFNLDKLVSCDR---PA---DYTLWVGLLSFHQAL 352
A +++ G I+A + N DK + D+ PA LW + L
Sbjct: 255 MAVMEKSPYFEGLISA--------VMINTDKRIRNDKRVTPAFIYGALLWPAFIYEQHRL 306
Query: 353 VSD 355
V++
Sbjct: 307 VTE 309
>gi|254672376|emb|CBA05629.1| poly(A) polymerase [Neisseria meningitidis alpha275]
Length = 362
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 132/244 (54%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++++LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSSKLGFDLSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|407455620|ref|YP_006734511.1| poly(A) polymerase family protein [Chlamydia psittaci GR9]
gi|405782163|gb|AFS20912.1| poly(A) polymerase family protein [Chlamydia psittaci GR9]
Length = 428
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G +AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 48 VVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E L+++ +G E D++R RDFTIN LF+D
Sbjct: 108 IRFSNQIIEVSTFRS----GSADEDCLITKDNLWGTAEEDVLR------RDFTINGLFYD 157
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+SDL LRT+ ++ F +D R+LR L+I AR + A+
Sbjct: 158 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEAL 217
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + ++R+ EL ML G + L +Y +L+IL P+
Sbjct: 218 QECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFPY 264
>gi|153003178|ref|YP_001377503.1| poly(A) polymerase [Anaeromyxobacter sp. Fw109-5]
gi|152026751|gb|ABS24519.1| poly(A) polymerase [Anaeromyxobacter sp. Fw109-5]
Length = 548
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 142/287 (49%), Gaps = 28/287 (9%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+ L+ +AY VGGCVRDLLL PKDFDV T A+ ++R F +IGRRF +
Sbjct: 58 VIARLRHMRHRAYFVGGCVRDLLLGAKPKDFDVATDAHPGEVRAIFRNCRLIGRRFRLAH 117
Query: 135 VHIKGS-VIEVSSFET----VAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTIN 188
V+ +G VIEV++F V + + +L+++ +G E D VR RDFT+N
Sbjct: 118 VYFRGGKVIEVATFRKNPVDVGEDVPDTDDLLITRDNVFGTAEEDAVR------RDFTVN 171
Query: 189 SLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKD 248
LF+D ++ DY G DL ++ T+ + ED R+LR +R AARLG D
Sbjct: 172 GLFYDVATGEVIDYVGGREDLEARRIATIGDPEIRMREDPVRLLRAVRFAARLGFIIAPD 231
Query: 249 IDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQ- 307
AM +S + R +R++ E+ +L G + + LLR L ++LP AA L+
Sbjct: 232 TFEAMRRHASELARCAPARVLEEIFKILRCGGSARAFELLRASGALPVILPALAAALESW 291
Query: 308 -QAGKITAENPMMLMRLFF----NLDKLVSCDRPADYTLWVGLLSFH 349
G+ R FF LD+LV + +G + H
Sbjct: 292 DTTGR----------RAFFAHLAALDRLVRSGEEVSDAVLLGAIVMH 328
>gi|359787321|ref|ZP_09290379.1| poly(A) polymerase [Halomonas sp. GFAJ-1]
gi|359295450|gb|EHK59719.1| poly(A) polymerase [Halomonas sp. GFAJ-1]
Length = 446
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 135/265 (50%), Gaps = 13/265 (4%)
Query: 42 DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRV 101
DS V+ + + + ++R I + VL L S GF A+LVGGC+RD LL ++
Sbjct: 6 DSPESAVEPLSPRIIPRSEHPVSRQQISDAALKVLHRLNSAGFDAFLVGGCIRDALLGKM 65
Query: 102 PKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAK--HG----- 154
PKDFDV T A +Q+R F S +IGRRF I V VIEV++F + HG
Sbjct: 66 PKDFDVATNATPEQVRDLFRNSRMIGRRFRIVHVRFGREVIEVTTFRGKPQDEHGDHIAQ 125
Query: 155 EGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKL 214
+ +LL +G E D +R RDFT+N+L+++ I+D+ANG D++ L
Sbjct: 126 QSDAGLLLRDNVWGNIEEDALR------RDFTVNALYYNIADFTIHDFANGAQDIKSRTL 179
Query: 215 RTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNY 274
R + + ED R+LR +R AA+L + + M L+ + ++ +R+ E+
Sbjct: 180 RLIGDPATRYREDPVRMLRAVRFAAKLDFTIDPATEEPMFDLAPLLLQIPPARLFDEVLK 239
Query: 275 MLSYGAAESSICLLRRYNLLKILLP 299
+ G + LL YNL +L P
Sbjct: 240 LFMSGHGLVTFRLLSHYNLFGMLFP 264
>gi|194290641|ref|YP_002006548.1| poly(a) polymerase i [Cupriavidus taiwanensis LMG 19424]
gi|193224476|emb|CAQ70487.1| poly(A) polymerase I [Cupriavidus taiwanensis LMG 19424]
Length = 507
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 143/299 (47%), Gaps = 28/299 (9%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+QAY+VGG VRDLLL PKDFDV T A +Q++ F RS IIGRRF I
Sbjct: 48 VTSTLQQAGYQAYIVGGAVRDLLLGIKPKDFDVATNATPEQVQSLFRRSRIIGRRFQIVH 107
Query: 135 VHIKGS----VIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDEIDLV------ 175
V G +IEVS+F ET+ + K L S+ + D V
Sbjct: 108 VTFYGGREQEIIEVSTFRALVDAIASETLPEGRRLKRAELDSKT-HAIDASGRVLRDNVW 166
Query: 176 --RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+ ++ RDFTIN++++DP ++DY +G+ D+R LR + + ED R+LR
Sbjct: 167 GSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDPATRYREDPVRMLR 226
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+ G + + L+ I + +R+ E+ +L G A +S+ LR+ L
Sbjct: 227 VVRFAAKTGFDIDEATRHPIAGLAELIHNVPSARLFDEMLKLLMSGHAWASLQELRKAGL 286
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
K LLP L+Q G+ + N D+ V +P L +H L
Sbjct: 287 HKGLLPLLDVALEQPMGQ------RFVQLALDNTDRRVQAGKPVSPGFLFAALLWHHVL 339
>gi|406593736|ref|YP_006740915.1| poly(A) polymerase family protein [Chlamydia psittaci NJ1]
gi|405789608|gb|AFS28350.1| poly(A) polymerase family protein [Chlamydia psittaci NJ1]
Length = 428
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G +AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 48 VVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E L+++ +G E D++R RDFTIN LF+D
Sbjct: 108 IRFSNQIIEVSTFRS----GSADEDCLITKDNLWGTAEEDVLR------RDFTINGLFYD 157
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+SDL LRT+ ++ F +D R+LR L+I AR + A+
Sbjct: 158 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEAL 217
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + ++R+ EL ML G + L +Y +L+IL P+
Sbjct: 218 QECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFPY 264
>gi|384450874|ref|YP_005663474.1| poly(A) polymerase family protein [Chlamydophila psittaci 6BC]
gi|407457038|ref|YP_006735611.1| poly(A) polymerase family protein [Chlamydia psittaci VS225]
gi|328914968|gb|AEB55801.1| poly(A) polymerase family protein [Chlamydophila psittaci 6BC]
gi|405784299|gb|AFS23046.1| poly(A) polymerase family protein [Chlamydia psittaci VS225]
Length = 414
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G +AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 34 VVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAH 93
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E L+++ +G E D++R RDFTIN LF+D
Sbjct: 94 IRFSNQIIEVSTFRS----GSADEDCLITKDNLWGTAEEDVLR------RDFTINGLFYD 143
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+SDL LRT+ ++ F +D R+LR L+I AR + A+
Sbjct: 144 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEAL 203
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + ++R+ EL ML G + L +Y +L+IL P+
Sbjct: 204 QECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFPY 250
>gi|392553851|ref|ZP_10300988.1| poly(A) polymerase [Pseudoalteromonas undina NCIMB 2128]
Length = 432
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 148/281 (52%), Gaps = 15/281 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R + VL LK G+ AYLVGGC+RD+LL + PKDFDV+T A +Q+++ F
Sbjct: 8 GISRKQFSPNAIKVLYRLKDGGYDAYLVGGCIRDVLLGQQPKDFDVVTNATPEQVKKLFR 67
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVR----- 176
+IGRRF + + +IEV+ T+ H E +E +QI + L+R
Sbjct: 68 NCRLIGRRFRLAHIVFGREIIEVA---TMRGHHEAQEDK--NQISQSSEHGQLLRDNVFG 122
Query: 177 --WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDF+IN+L++ +YDYANG++ ++ ++ + + ED R+LR
Sbjct: 123 SIEEDAERRDFSINALYYSINDFCVYDYANGLAAIKAKQIELIGDPETRYREDPVRMLRA 182
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + + + L+S ++ + +R+ E+ + G A+ + +LR+Y L
Sbjct: 183 VRFATKLDMQIAPASEKPITELASLLDNIPPARLFEEILKLFLNGKAQQNFIMLRQYGLF 242
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
K L P LD++ G + + ++F N D ++ D+
Sbjct: 243 KSLFPELDRILDKKPGGL---EETFIKQMFANTDIRINADK 280
>gi|365921176|ref|ZP_09445469.1| putative polynucleotide adenylyltransferase [Cardiobacterium
valvarum F0432]
gi|364576675|gb|EHM53988.1| putative polynucleotide adenylyltransferase [Cardiobacterium
valvarum F0432]
Length = 440
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 147/301 (48%), Gaps = 25/301 (8%)
Query: 39 MCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLL 98
+C VDV + +D R L I R L GF+A+LVGGC+RDLLL
Sbjct: 9 VCRKHGEHPVDVHD---IDPRALKIVRQ------------LDEAGFEAFLVGGCLRDLLL 53
Query: 99 RRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE 158
+ PKDFD+ T A +++ F +IGRRF + VH +IEV++F + +
Sbjct: 54 GKRPKDFDIATNARPEEVAAIFRNCRLIGRRFRLAHVHFGRDIIEVATFRAPPERLARTD 113
Query: 159 TV--LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
+ +L YG E D VR RDFTIN+L++D +++ DY ++D+ +R
Sbjct: 114 SFGSVLEDNHYGSIEDDAVR------RDFTINALYYDVKNDELRDYVGALADIEARIIRI 167
Query: 217 LIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ +TED R+LR R AA+LG+ + A+ ++ + +R+ E +
Sbjct: 168 IGDPATRYTEDPVRMLRAARFAAKLGMPLEAATEAAIADCRDNLRAVPAARLFDEAQKLF 227
Query: 277 SYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRL-FFNLDKLVSCDR 335
G E+ +L+RY L +L P A ++ + A+ L+R+ N D V+ D+
Sbjct: 228 MSGYGEACFEVLQRYGLFAMLFP-DAGHVFEHPNAAYAQYAQRLVRIALANTDARVAEDK 286
Query: 336 P 336
P
Sbjct: 287 P 287
>gi|329943132|ref|ZP_08291906.1| poly(A) polymerase family protein [Chlamydophila psittaci Cal10]
gi|332287715|ref|YP_004422616.1| poly(A) polymerase [Chlamydophila psittaci 6BC]
gi|384451868|ref|YP_005664466.1| poly(A) polymerase [Chlamydophila psittaci 01DC11]
gi|384452842|ref|YP_005665439.1| poly(A) polymerase [Chlamydophila psittaci 08DC60]
gi|384453821|ref|YP_005666417.1| poly(A) polymerase [Chlamydophila psittaci C19/98]
gi|384454800|ref|YP_005667395.1| poly(A) polymerase [Chlamydophila psittaci 02DC15]
gi|392376946|ref|YP_004064724.1| putative poly(A) polymerase [Chlamydophila psittaci RD1]
gi|407454350|ref|YP_006733458.1| poly(A) polymerase family protein [Chlamydia psittaci 84/55]
gi|407459607|ref|YP_006737710.1| poly(A) polymerase family protein [Chlamydia psittaci M56]
gi|407460977|ref|YP_006738752.1| poly(A) polymerase family protein [Chlamydia psittaci WC]
gi|449071434|ref|YP_007438514.1| putative poly(A) polymerase [Chlamydophila psittaci Mat116]
gi|313848289|emb|CBY17290.1| putative poly(A) polymerase [Chlamydophila psittaci RD1]
gi|325507270|gb|ADZ18908.1| poly(A) polymerase [Chlamydophila psittaci 6BC]
gi|328814679|gb|EGF84669.1| poly(A) polymerase family protein [Chlamydophila psittaci Cal10]
gi|334692602|gb|AEG85821.1| poly(A) polymerase [Chlamydophila psittaci C19/98]
gi|334693578|gb|AEG86796.1| poly(A) polymerase [Chlamydophila psittaci 01DC11]
gi|334694557|gb|AEG87774.1| poly(A) polymerase [Chlamydophila psittaci 02DC15]
gi|334695531|gb|AEG88747.1| poly(A) polymerase [Chlamydophila psittaci 08DC60]
gi|405781109|gb|AFS19859.1| poly(A) polymerase family protein [Chlamydia psittaci 84/55]
gi|405786539|gb|AFS25284.1| poly(A) polymerase family protein [Chlamydia psittaci M56]
gi|405787303|gb|AFS26047.1| poly(A) polymerase family protein [Chlamydia psittaci WC]
gi|449039942|gb|AGE75366.1| putative poly(A) polymerase [Chlamydophila psittaci Mat116]
Length = 428
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G +AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 48 VVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E L+++ +G E D++R RDFTIN LF+D
Sbjct: 108 IRFSNQIIEVSTFRS----GSADEDCLITKDNLWGTAEEDVLR------RDFTINGLFYD 157
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+SDL LRT+ ++ F +D R+LR L+I AR + A+
Sbjct: 158 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEAL 217
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + ++R+ EL ML G + L +Y +L+IL P+
Sbjct: 218 QECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFPY 264
>gi|385339802|ref|YP_005893674.1| poly(A) polymerase [Neisseria meningitidis G2136]
gi|325198046|gb|ADY93502.1| poly(A) polymerase [Neisseria meningitidis G2136]
Length = 445
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS I+GRRF I
Sbjct: 36 VIRRLKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRIVGRRFQIVH 95
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 96 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 149
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 150 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 206
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 207 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 266
Query: 310 GKIT 313
GK+T
Sbjct: 267 GKMT 270
>gi|170717755|ref|YP_001784822.1| poly(A) polymerase [Haemophilus somnus 2336]
gi|168825884|gb|ACA31255.1| poly(A) polymerase [Haemophilus somnus 2336]
Length = 457
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 133/266 (50%), Gaps = 14/266 (5%)
Query: 52 NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTA 111
N V + GI MI + + V++ L G++AY+VGGC+RDLLL + PKDFDV T A
Sbjct: 21 NKYVVKASQYGIMPRMISRNALSVVEKLHRNGYEAYIVGGCLRDLLLGKKPKDFDVATNA 80
Query: 112 NLKQIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFETVA--KHGE-----GKETVLLS 163
+Q++ F R ++GRRF + + +IEV++F H E +LL
Sbjct: 81 KPEQVQAIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRAAHTDNHNERQAKQNNAGMLLR 140
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D R RDFT+N+ +++P N + DY NGI DL+ KLR +
Sbjct: 141 DNVYGTIEQDAER------RDFTVNAFYYNPQNNTLRDYFNGIEDLKAGKLRLIGDPVKR 194
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R A+L + K + ++ ++ + +R+ E +L G
Sbjct: 195 YQEDPVRMLRSIRFMAKLDMFLDKPSQEPIKKMAHLLKNIPPARLFDESVKLLQAGYGIK 254
Query: 284 SICLLRRYNLLKILLPFHAAYLDQQA 309
+ LLR Y L L P +Y +A
Sbjct: 255 TYQLLREYGLFDQLFPTLTSYFTDKA 280
>gi|218767953|ref|YP_002342465.1| poly(A) polymerase [Neisseria meningitidis Z2491]
gi|433475446|ref|ZP_20432787.1| poly(A) polymerase family protein [Neisseria meningitidis 88050]
gi|433479361|ref|ZP_20436655.1| poly(A) polymerase family protein [Neisseria meningitidis 63041]
gi|433513196|ref|ZP_20469990.1| poly(A) polymerase family protein [Neisseria meningitidis 63049]
gi|433515465|ref|ZP_20472237.1| poly(A) polymerase family protein [Neisseria meningitidis 2004090]
gi|433517342|ref|ZP_20474091.1| poly(A) polymerase family protein [Neisseria meningitidis 96023]
gi|433519563|ref|ZP_20476284.1| poly(A) polymerase family protein [Neisseria meningitidis 65014]
gi|433523678|ref|ZP_20480343.1| poly(A) polymerase family protein [Neisseria meningitidis 97020]
gi|433527952|ref|ZP_20484563.1| poly(A) polymerase family protein [Neisseria meningitidis NM3652]
gi|433530126|ref|ZP_20486719.1| poly(A) polymerase family protein [Neisseria meningitidis NM3642]
gi|433532383|ref|ZP_20488949.1| poly(A) polymerase family protein [Neisseria meningitidis 2007056]
gi|433534160|ref|ZP_20490705.1| poly(A) polymerase family protein [Neisseria meningitidis 2001212]
gi|433540696|ref|ZP_20497151.1| poly(A) polymerase family protein [Neisseria meningitidis 63006]
gi|121051961|emb|CAM08269.1| putative poly(A) polymerase [Neisseria meningitidis Z2491]
gi|432211264|gb|ELK67219.1| poly(A) polymerase family protein [Neisseria meningitidis 88050]
gi|432217164|gb|ELK73033.1| poly(A) polymerase family protein [Neisseria meningitidis 63041]
gi|432248873|gb|ELL04297.1| poly(A) polymerase family protein [Neisseria meningitidis 63049]
gi|432254053|gb|ELL09389.1| poly(A) polymerase family protein [Neisseria meningitidis 2004090]
gi|432254351|gb|ELL09686.1| poly(A) polymerase family protein [Neisseria meningitidis 96023]
gi|432255554|gb|ELL10883.1| poly(A) polymerase family protein [Neisseria meningitidis 65014]
gi|432260577|gb|ELL15835.1| poly(A) polymerase family protein [Neisseria meningitidis 97020]
gi|432266259|gb|ELL21447.1| poly(A) polymerase family protein [Neisseria meningitidis NM3652]
gi|432268054|gb|ELL23226.1| poly(A) polymerase family protein [Neisseria meningitidis NM3642]
gi|432268328|gb|ELL23499.1| poly(A) polymerase family protein [Neisseria meningitidis 2007056]
gi|432272670|gb|ELL27777.1| poly(A) polymerase family protein [Neisseria meningitidis 2001212]
gi|432277711|gb|ELL32757.1| poly(A) polymerase family protein [Neisseria meningitidis 63006]
Length = 453
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG +RDLLL PKDFDV T A +Q+ + F RS I+GRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRIVGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|315127518|ref|YP_004069521.1| poly(A) polymerase [Pseudoalteromonas sp. SM9913]
gi|315016032|gb|ADT69370.1| poly(A) polymerase I [Pseudoalteromonas sp. SM9913]
Length = 433
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 148/281 (52%), Gaps = 15/281 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R + VL LK G+ AYLVGGC+RD+LL + PKDFDV+T A +Q+++ F
Sbjct: 9 GISRKQFSPNAIKVLYRLKDGGYDAYLVGGCIRDVLLGQQPKDFDVVTNATPEQVKKLFR 68
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVR----- 176
+IGRRF + + +IEV+ T+ H E +E +QI + L+R
Sbjct: 69 NCRLIGRRFRLAHIVFGREIIEVA---TMRGHHEAQEDK--NQISQSSEHGQLLRDNVFG 123
Query: 177 --WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDF+IN+L++ IYDYANG++ ++ ++ + + ED R+LR
Sbjct: 124 SIEEDAERRDFSINALYYSINDFCIYDYANGLAAIKAKQIELIGDPETRYREDPVRMLRA 183
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + + + +L+S ++ + +R+ E+ + G A+ + +LR+Y L
Sbjct: 184 VRFATKLDMQIAPASEKPITALASLLDNIPPARLFEEILKLFLNGKAQQNFLMLRKYGLF 243
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
K L P LD+ G + + ++F N D ++ ++
Sbjct: 244 KSLFPELDRILDKNPGGL---EETFIKQMFANTDIRINAEK 281
>gi|385337788|ref|YP_005891661.1| poly(A) polymerase [Neisseria meningitidis WUE 2594]
gi|319410202|emb|CBY90540.1| K00970 poly(A) polymerase [Neisseria meningitidis WUE 2594]
Length = 478
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG +RDLLL PKDFDV T A +Q+ + F RS I+GRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRIVGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|345863219|ref|ZP_08815431.1| poly(A) polymerase [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345878930|ref|ZP_08830620.1| chaperone protein dnaK [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344224058|gb|EGV50471.1| chaperone protein dnaK [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|345125680|gb|EGW55548.1| poly(A) polymerase [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 405
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 127/233 (54%), Gaps = 17/233 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+L LK+ G++A LVGG VRDLLL R PKDFDV T A +Q+R+ F +IGRRF +
Sbjct: 1 MLYRLKNAGYRACLVGGGVRDLLLGREPKDFDVATDARPEQVRQVFRNCRLIGRRFRLAH 60
Query: 135 VHIKGSVIEVSSFETVAKHGEGKET--------VLLSQIPYGCDEIDLVRWRNSIHRDFT 186
VH +IEV++F ++ G+G++ ++L YG + D R RDFT
Sbjct: 61 VHFGREIIEVATFRSM---GDGEQQDQRQVENGMILRDNVYGTIDEDAQR------RDFT 111
Query: 187 INSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFC 246
IN+L++D + DYANG+ DLR +LR L + ED R+LR +R A +LG
Sbjct: 112 INALYYDIEDFSVLDYANGMQDLREGRLRLLGDPEQRYREDPVRMLRAVRFAGKLGFLIE 171
Query: 247 KDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ + + LS ++ + +R+ E+ + G+A + LR Y L L P
Sbjct: 172 EQTEAPIEPLSGLLQEVPSARLYEEVLKLFLGGSALETFEKLRHYGLFSRLFP 224
>gi|225076461|ref|ZP_03719660.1| hypothetical protein NEIFLAOT_01507 [Neisseria flavescens
NRL30031/H210]
gi|224952140|gb|EEG33349.1| hypothetical protein NEIFLAOT_01507 [Neisseria flavescens
NRL30031/H210]
Length = 450
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/274 (35%), Positives = 141/274 (51%), Gaps = 11/274 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI M+ + V K L GFQAY+VGG VRDLLL PKDFD+ T A +QIR+ F
Sbjct: 30 GICADMLSFAAEKVAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKVFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
RS IIGRRF I V I IEV++F K + + ++ YG E D +R
Sbjct: 90 RSRIIGRRFQIVHVMIGPETIEVTTFRGGNKVQQNAQGRIMKDNTYGSIEEDAMR----- 144
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT N+L++DP +I+D+ G++D+ KL + + ED RILR +R++ +L
Sbjct: 145 -RDFTCNALYYDPIKEEIWDFHQGVADVADKKLVMIGDPAERYQEDPVRILRAVRLSGKL 203
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
G + + + ++ +R+ E+ +L G S C L+R N L I H
Sbjct: 204 GFKVEEQTALPIAEYAGRLKNEPVARLFDEILKILFSGY--SRAC-LKRLNDLGIPEGIH 260
Query: 302 AAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
LD TA+ M+++ L N D+ + D+
Sbjct: 261 -PLLDALKTAETADKRMIMLAL-KNTDERIRADK 292
>gi|113461167|ref|YP_719236.1| poly(A) polymerase [Haemophilus somnus 129PT]
gi|112823210|gb|ABI25299.1| poly(A) polymerase [Haemophilus somnus 129PT]
Length = 457
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 132/266 (49%), Gaps = 14/266 (5%)
Query: 52 NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTA 111
N V + GI MI + + V++ L G++AY+VGGC+RDLLL + PKDFDV T A
Sbjct: 21 NKYVVKASQYGIMPRMISRNALSVVEKLHRNGYEAYIVGGCLRDLLLGKKPKDFDVATNA 80
Query: 112 NLKQIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFETVA--KHGE-----GKETVLLS 163
+Q++ F R ++GRRF + + +IEV++F H E +LL
Sbjct: 81 KPEQVQAIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRAAHSDNHNERQAKQNNAGMLLR 140
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D R RDFT+N+ +++P N + DY NGI DL+ KLR +
Sbjct: 141 DNVYGTIEQDAER------RDFTVNAFYYNPQNNTLRDYFNGIEDLKAGKLRLIGDPVKR 194
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R A+L + K + ++ ++ + +R+ E +L G
Sbjct: 195 YQEDPVRMLRSIRFMAKLDMFLDKPSQEPIKKMAHLLKNIPPARLFDESVKLLQAGYGIK 254
Query: 284 SICLLRRYNLLKILLPFHAAYLDQQA 309
+ LLR Y L L P Y +A
Sbjct: 255 TYQLLREYGLFDQLFPTLTPYFTDKA 280
>gi|90023016|ref|YP_528843.1| poly(A) polymerase [Saccharophagus degradans 2-40]
gi|89952616|gb|ABD82631.1| poly(A) polymerase [Saccharophagus degradans 2-40]
Length = 443
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 136/262 (51%), Gaps = 17/262 (6%)
Query: 47 EVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFD 106
E + +T+ ++ GI I S+ ++ L+ G++AYLVGG VRDLLL PKDFD
Sbjct: 10 EPSAAASQTIAEQDHGIDSHDISHASYKTIEQLQRAGYEAYLVGGGVRDLLLDADPKDFD 69
Query: 107 VITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET------- 159
V T+A +Q+R+ F + IIG+RF I V +IEV++F H + + +
Sbjct: 70 VATSATPEQVRKVFRNARIIGKRFRIVHVRFGREIIEVTTFR--GSHTDARSSRDASQSD 127
Query: 160 --VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTL 217
VLL YG + D +R RDFTIN+L+++P ++ D+ G+ DL+ +R +
Sbjct: 128 TGVLLRDNVYGDIKSDAMR------RDFTINALYYNPINGEVLDFCGGLKDLKNRTIRII 181
Query: 218 IPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLS 277
+ ED R+LR R A +LG + + + + + + +R+ E+ +
Sbjct: 182 GDPEERYKEDPVRLLRAARFAGKLGFNIDPVTEKPIREHADYLAHIPSARLFEEVLKLFM 241
Query: 278 YGAAESSICLLRRYNLLKILLP 299
G A +++ LR Y+L K L P
Sbjct: 242 SGQATATLNKLRDYDLFKYLFP 263
>gi|197336263|ref|YP_002156965.1| poly(A) polymerase [Vibrio fischeri MJ11]
gi|197317753|gb|ACH67200.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Vibrio
fischeri MJ11]
Length = 475
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 138/267 (51%), Gaps = 15/267 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R + + VL L + G+ AYLVGG VRD+LL + PKDFD+ T A +QI++ F
Sbjct: 47 ISRKDLSDNALKVLYRLSNAGYDAYLVGGGVRDILLGQEPKDFDIATNATPEQIKKLFRN 106
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKH--------GEGKETVLLSQIPYGCDEIDL 174
+IGRRF + + VIEV++F K + E +LL YG E D
Sbjct: 107 CRLIGRRFRLAHILFGRDVIEVATFRGHHKEENEKKNISAQSDEGMLLRDNVYGTVEEDA 166
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+++++ I+DYANGI DL+ +R + + ED R+LR
Sbjct: 167 ER------RDFTVNAMYYNIADYSIHDYANGIEDLKNGIIRLIGDPETRYREDPVRMLRA 220
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L ++ C + LS + + +R+ E +L G ++ +LR +NL
Sbjct: 221 VRFAAKLDMTICDKTAAPIAELSPLLRDIPAARLFEESLKLLQTGNGLNTYWMLRDFNLF 280
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLM 321
+ L P +L ++ G AE + L+
Sbjct: 281 QQLFPVLTPFLTEE-GNSPAEQMIELV 306
>gi|433536525|ref|ZP_20493033.1| poly(A) polymerase family protein [Neisseria meningitidis 77221]
gi|432274475|gb|ELL29563.1| poly(A) polymerase family protein [Neisseria meningitidis 77221]
Length = 453
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG +RDLLL PKDFDV T A +Q+ + F RS I+GRRF I
Sbjct: 44 VIRRLKGTGFQAYVVGGAIRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRIVGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYREDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|187929930|ref|YP_001900417.1| poly(A) polymerase [Ralstonia pickettii 12J]
gi|187726820|gb|ACD27985.1| poly(A) polymerase [Ralstonia pickettii 12J]
Length = 521
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 128/263 (48%), Gaps = 32/263 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+ A++VGG VRDLLL PKDFDV T A Q++ F RS IIGRRF I
Sbjct: 77 VTSTLQEAGYAAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSRIIGRRFQIVH 136
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------------------- 169
V G +IEVS+F + + V Q+P G
Sbjct: 137 VTFYGGRDQEIIEVSTFRALV------DAVDAEQVPAGKRVKRTELDHHTHAVDASGRVL 190
Query: 170 -DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
D + + ++ RDFT+N++++DP ++DY +G+ D+R LR + + + ED
Sbjct: 191 RDNVWGTQAEDATRRDFTVNAMYYDPADETVHDYHHGMEDMRARTLRMIGDPHTRYREDP 250
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G D + L I + +R+ E+ +L G A +S+ L
Sbjct: 251 VRMLRVVRFAAKTGFDIDPDTRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQEL 310
Query: 289 RRYNLLKILLPFHAAYLDQQAGK 311
R+ L + LLP L+Q G+
Sbjct: 311 RKAGLHRGLLPLLDVALEQPMGQ 333
>gi|334129394|ref|ZP_08503199.1| PolyA polymerase [Methyloversatilis universalis FAM5]
gi|333445620|gb|EGK73561.1| PolyA polymerase [Methyloversatilis universalis FAM5]
Length = 444
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 127/228 (55%), Gaps = 6/228 (2%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R I + V L+++G+QAY+VGG VRDL+ PKDFDV T+A +Q+ F
Sbjct: 31 GISREQILPAARKVCDALQAEGYQAYVVGGAVRDLIAGIEPKDFDVATSATPEQVTEVFR 90
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
R+ +IGRRF I V VIEV++F ++ + +L +G E D R
Sbjct: 91 RARMIGRRFKIVHVMFGRDVIEVTTFRGDSEAVTDEHGRILHDNVFGTMEEDAAR----- 145
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT+N+L++DP + D+ +G++DL+ LR + A + ED R+LR +R+ A+L
Sbjct: 146 -RDFTVNALYYDPTTETVIDFHHGVADLKQKTLRMIGDAPRRYREDPVRMLRAVRLGAKL 204
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
GL + S+SS +E + +R+ E+ +L+ G A + LR
Sbjct: 205 GLIIDPAAREPIRSMSSLLENVPPARLFDEMLKLLTSGHAVRCVRQLR 252
>gi|90416970|ref|ZP_01224899.1| poly(A) polymerase [gamma proteobacterium HTCC2207]
gi|90331317|gb|EAS46561.1| poly(A) polymerase [gamma proteobacterium HTCC2207]
Length = 453
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 137/275 (49%), Gaps = 19/275 (6%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEII 126
MI + ++ V+ +L+ GF+AY+VGGCVRDLL+ PKDFDV T+A +++ F RS II
Sbjct: 35 MINRDAFKVVDVLQKAGFEAYVVGGCVRDLLIGLKPKDFDVATSAKPWEVKELFRRSRII 94
Query: 127 GRRFPICRVHIKGSVIEVSSFETVAKHGEGKE-------TVLLSQIPYGCDEIDLVRWRN 179
GRRF I V +IEV++F + + K +L +G E D R
Sbjct: 95 GRRFQIVHVQFSREIIEVTTFRSNSSQSTSKNRRQQTDSGMLTRDNVFGTVEEDASR--- 151
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RD T+N+L++DP N I+D+ NGI D+ +R + F ED R+LR R AA
Sbjct: 152 ---RDLTVNALYYDPSTNSIHDFTNGIDDVDAKIIRIIGDPETRFREDPVRLLRVARFAA 208
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+LG + M ++ ++++ R+ E + G + +L + L ++P
Sbjct: 209 KLGFNIEPATANPMKHRAADLQQVSPPRLFDETLKLFMSGQGLDTFKILVEHRLFDYIVP 268
Query: 300 FHAAYLDQQAGKITAENPMMLM-RLFFNLDKLVSC 333
L+ + G PM L+ + N DK +
Sbjct: 269 QLGPMLNDRQGI-----PMKLVSQALINTDKRIRA 298
>gi|423686909|ref|ZP_17661717.1| poly(A) polymerase [Vibrio fischeri SR5]
gi|371493668|gb|EHN69268.1| poly(A) polymerase [Vibrio fischeri SR5]
Length = 475
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 138/267 (51%), Gaps = 15/267 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R + + VL L + G+ AYLVGG VRD+LL + PKDFD+ T A +QI++ F
Sbjct: 47 ISRKDLSDNALKVLYRLSNAGYDAYLVGGGVRDILLGQEPKDFDIATNATPEQIKKLFRN 106
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKH--------GEGKETVLLSQIPYGCDEIDL 174
+IGRRF + + VIEV++F K + E +LL YG E D
Sbjct: 107 CRLIGRRFRLAHILFGRDVIEVATFRGHHKEDNEKKNISAQSDEGMLLRDNVYGTVEEDA 166
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+++++ I+DYANGI DL+ +R + + ED R+LR
Sbjct: 167 ER------RDFTVNAMYYNIADYSIHDYANGIEDLKNGIIRLIGDPETRYREDPVRMLRA 220
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L ++ C + LS + + +R+ E +L G ++ +LR +NL
Sbjct: 221 VRFAAKLDMTICDKTAAPIADLSPLLRDIPAARLFEESLKLLQTGNGLNTYWMLRDFNLF 280
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLM 321
+ L P +L ++ G AE + L+
Sbjct: 281 QQLFPVLTPFLTEE-GNSPAEQMIELV 306
>gi|110833201|ref|YP_692060.1| poly(A) polymerase [Alcanivorax borkumensis SK2]
gi|110646312|emb|CAL15788.1| poly(A) polymerase [Alcanivorax borkumensis SK2]
Length = 459
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 145/283 (51%), Gaps = 18/283 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R + + + VL L GF+AYLVGGC+RD+L R PKDFDV T A +Q++R F R
Sbjct: 36 ISRQQVSRAALNVLYGLHKGGFEAYLVGGCLRDILCGREPKDFDVSTNATPEQVQRLFKR 95
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA--------KHGEGKET-VLLSQIPYGCDEID 173
S IIGRRF I V VIEVS+F A KH +ET ++L +G E D
Sbjct: 96 SRIIGRRFQIVHVRFGREVIEVSTFRAKASDDNQDRNKHHAHEETGMVLRDNTWGSIEED 155
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+R RDFTIN+L+++ ++D+ + D+ +R + F ED R+LR
Sbjct: 156 ALR------RDFTINALYYNIADFSLHDFVGSMEDIDQETIRLIGDPEQRFREDPVRMLR 209
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
R AA+LG K + + ++ + ++ +R+ E+ + G A +S L+ L
Sbjct: 210 AARFAAKLGFEIEKSTASRIPDMAELLLQVPSARLFDEVLKLFLSGHARASYEQLQELGL 269
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
+ L P L+ GK T E ML+ N D+ + D+P
Sbjct: 270 FRFLFPETQQALEGDQGK-TWE--AMLLAAMDNTDRRLLMDKP 309
>gi|172087758|ref|YP_205549.2| poly(A) polymerase [Vibrio fischeri ES114]
gi|171902346|gb|AAW86661.2| poly(A) polymerase I [Vibrio fischeri ES114]
Length = 475
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 138/267 (51%), Gaps = 15/267 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R + + VL L + G+ AYLVGG VRD+LL + PKDFD+ T A +QI++ F
Sbjct: 47 ISRKDLSDNALKVLYRLSNAGYDAYLVGGGVRDILLGQEPKDFDIATNATPEQIKKLFRN 106
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKH--------GEGKETVLLSQIPYGCDEIDL 174
+IGRRF + + VIEV++F K + E +LL YG E D
Sbjct: 107 CRLIGRRFRLAHILFGRDVIEVATFRGHHKEDNEKKNISAQSDEGMLLRDNVYGTVEEDA 166
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+++++ I+DYANGI DL+ +R + + ED R+LR
Sbjct: 167 ER------RDFTVNAMYYNIADYSIHDYANGIEDLKNGIIRLIGDPETRYREDPVRMLRA 220
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L ++ C + LS + + +R+ E +L G ++ +LR +NL
Sbjct: 221 VRFAAKLDMTICDKTAAPIAELSPLLRDIPAARLFEESLKLLQTGNGLNTYWMLRDFNLF 280
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLM 321
+ L P +L ++ G AE + L+
Sbjct: 281 QQLFPVLTPFLTEE-GNSPAEQMIELV 306
>gi|183220775|ref|YP_001838771.1| Poly(A) polymerase [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
gi|167779197|gb|ABZ97495.1| Poly(A) polymerase (PAP; Plasmid copy number protein) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 497
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 11/219 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I RA I + + ++ L ++AYLVGG VRDLL+ + PKDFD++T+A QI+R F+
Sbjct: 40 IRRANIDEDAIKIINRLNKFRYKAYLVGGGVRDLLMGKRPKDFDIVTSATPNQIKRVFNN 99
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA-----KHGEGKETVLLSQIPYGCDEIDLVRW 177
IIG+RF I + KG +IEVS+F ++ KH + ++ +G + D R
Sbjct: 100 CRIIGKRFKIVHIIFKGKIIEVSTFRSLPEHRLEKHKAENDYLIKRDNSFGTAKEDAAR- 158
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSLF+DP + I DY G D++ +R + +SF ED R+LR ++
Sbjct: 159 -----RDFTINSLFYDPKNDSILDYVGGFEDIQKKIVRVIGDPDISFKEDPVRMLRAVKF 213
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ LGL K A+ +E+ +R++ E N M
Sbjct: 214 SVLLGLDIEKKTKLAIKKNRLELEKSSTARLLEEYNKMF 252
>gi|359299982|ref|ZP_09185821.1| polyA polymerase [Haemophilus [parainfluenzae] CCUG 13788]
gi|402305766|ref|ZP_10824825.1| polynucleotide adenylyltransferase [Haemophilus sputorum HK 2154]
gi|400376879|gb|EJP29766.1| polynucleotide adenylyltransferase [Haemophilus sputorum HK 2154]
Length = 449
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 134/253 (52%), Gaps = 14/253 (5%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T+++ + I+ P+ + +++ L+ GF+AY+VGGCVRDLLL R PKDFD+ T A +
Sbjct: 7 TLNASHFDISPRAFPKHALTIVEKLQRAGFEAYIVGGCVRDLLLGRKPKDFDISTNARPE 66
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFETVAK-HGEGK------ETVLLSQIP 166
++++ F R ++G+RF + V + EV++F + H K E +LL
Sbjct: 67 EVQKIFGRQCRLVGKRFRLAHVVFGREIFEVATFRANHENHSNDKISKVSDEGMLLRDNV 126
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG D R RDF++N+ ++DP N I+D+ NG+ DL+ KLR L + E
Sbjct: 127 YGSLREDAER------RDFSVNAFYYDPTHNIIFDFFNGVEDLQAGKLRLLGNPIQRYQE 180
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K + ++ + + +R+ E +L G +
Sbjct: 181 DPVRMLRAIRFMAKLDMFLDKPTAKPIKEMAGLLTNIPAARLFDESLKLLQSGEGVKTYQ 240
Query: 287 LLRRYNLLKILLP 299
LLR Y L ++L P
Sbjct: 241 LLREYGLFELLFP 253
>gi|416183664|ref|ZP_11612677.1| poly(A) polymerase [Neisseria meningitidis M13399]
gi|325134021|gb|EGC56676.1| poly(A) polymerase [Neisseria meningitidis M13399]
Length = 453
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 129/244 (52%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V VIEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEVIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NG+ D+ KL + A + ED RILR +R++ +LG +
Sbjct: 158 EKEEILDFHNGMDDIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSQ---ATAG 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|407801157|ref|ZP_11148001.1| poly(A) polymerase [Alcanivorax sp. W11-5]
gi|407024594|gb|EKE36337.1| poly(A) polymerase [Alcanivorax sp. W11-5]
Length = 474
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 149/293 (50%), Gaps = 18/293 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R + + VL LK GF+AYLVGGC+RD+L PKDFDV+T A+ ++I R F
Sbjct: 38 ISRQDFSRAALHVLYGLKDAGFEAYLVGGCLRDILTGIKPKDFDVVTNAHPEEIERVFRG 97
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE---------TVLLSQIPYGCDEID 173
+ IIGRRF + V KG VIEV++F V E ++ +L YG E D
Sbjct: 98 ARIIGRRFRLVHVRFKGEVIEVATFRAVTGQEEDEDDRHSRRSAGGQILRDNVYGTIEED 157
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+R RDFT N+L++D ++D+A+ + D+ LR + + ED R++R
Sbjct: 158 ALR------RDFTCNALYYDIRDFSLHDFADSLRDIEHRTLRLIGDPEQRYREDPVRMIR 211
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+L S + + L+ ++++ +R+ E+ + G + + LL++++L
Sbjct: 212 AVRFAAKLDFSIDPATEEPLARLAPLLQQVPSARLFEEVLKLFLSGQGQRTFALLQKHHL 271
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
L P A LD G A + ++ N D+ ++ ++P +L
Sbjct: 272 FDALFPATAEALDDDDG---ASDLKLIHAAMRNTDRRLAQEKPVTPAFLFAVL 321
>gi|406592677|ref|YP_006739857.1| poly(A) polymerase family protein [Chlamydia psittaci CP3]
gi|406594223|ref|YP_006741953.1| poly(A) polymerase family protein [Chlamydia psittaci MN]
gi|410858729|ref|YP_006974669.1| putative poly(A) polymerase [Chlamydia psittaci 01DC12]
gi|405782655|gb|AFS21403.1| poly(A) polymerase family protein [Chlamydia psittaci MN]
gi|405788549|gb|AFS27292.1| poly(A) polymerase family protein [Chlamydia psittaci CP3]
gi|410811624|emb|CCO02277.1| putative poly(A) polymerase [Chlamydia psittaci 01DC12]
Length = 428
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G +AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 48 VVKTLRKAGHKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E L+++ +G E D++R RDFTIN LF+D
Sbjct: 108 IRFSNQIIEVSTFRS----GSADEDCLITKDNLWGTAEEDVLR------RDFTINGLFYD 157
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+SDL LRT+ ++ F +D R+LR L+I AR + A+
Sbjct: 158 PKEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEAL 217
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + ++R+ EL ML G + L +Y +L+IL P+
Sbjct: 218 QECRYELIKSSQARVFEELIKMLGSGVSSQFFKLTAKYQILEILFPY 264
>gi|410664012|ref|YP_006916383.1| polynucleotide adenylyltransferase [Simiduia agarivorans SA1 = DSM
21679]
gi|409026369|gb|AFU98653.1| polynucleotide adenylyltransferase [Simiduia agarivorans SA1 = DSM
21679]
Length = 451
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 137/260 (52%), Gaps = 16/260 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+RA I + + ++ L +G++AYLVGG VRDLLL PKDFD+ T A +Q++ F
Sbjct: 31 ISRANISRGALSAMRRLHDEGYEAYLVGGGVRDLLLGGHPKDFDLATNATPEQVKALFRG 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK-------ETVLLSQIPYGCDEIDLV 175
+ IIGRRF I V + ++EV++F E + +LL +G E D
Sbjct: 91 ARIIGRRFKIVHVRMGRELLEVTTFRDNHSEAENERDSHQADSGMLLRDNVFGTLETD-- 148
Query: 176 RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGL 235
S RDFTIN+L++ ++DY G+ DL ++R + + ED R+LR +
Sbjct: 149 ----SARRDFTINALYYTSQDFTVHDYEGGMKDLEARQVRMIGDPLTRYKEDPVRMLRAV 204
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R AA+LG K + + ++ + ++ SR+ E + G+A ++ LLR Y+LL
Sbjct: 205 RFAAKLGFKIEKHTASPIAPNAALLSQVSSSRLFDESLKLFMAGSALATFQLLRDYDLLA 264
Query: 296 ILLPFHAAYL---DQQAGKI 312
L P A L D+QA K+
Sbjct: 265 HLFPQTDALLKQGDEQAEKL 284
>gi|389606068|emb|CCA44981.1| poly(A) polymerase [Neisseria meningitidis alpha522]
Length = 453
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 129/244 (52%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V VIEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEVIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NG+ D+ KL + A + ED RILR +R++ +LG +
Sbjct: 158 EKEEILDFHNGMDDIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSQ---ATAG 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|189910875|ref|YP_001962430.1| tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167775551|gb|ABZ93852.1| tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
Length = 492
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 11/219 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I RA I + + ++ L ++AYLVGG VRDLL+ + PKDFD++T+A QI+R F+
Sbjct: 35 IRRANIDEDAIKIINRLNKFRYKAYLVGGGVRDLLMGKRPKDFDIVTSATPNQIKRVFNN 94
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA-----KHGEGKETVLLSQIPYGCDEIDLVRW 177
IIG+RF I + KG +IEVS+F ++ KH + ++ +G + D R
Sbjct: 95 CRIIGKRFKIVHIIFKGKIIEVSTFRSLPEHRLEKHKAENDYLIKRDNSFGTAKEDAAR- 153
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTINSLF+DP + I DY G D++ +R + +SF ED R+LR ++
Sbjct: 154 -----RDFTINSLFYDPKNDSILDYVGGFEDIQKKIVRVIGDPDISFKEDPVRMLRAVKF 208
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ LGL K A+ +E+ +R++ E N M
Sbjct: 209 SVLLGLDIEKKTKLAIKKNRLELEKSSTARLLEEYNKMF 247
>gi|220934061|ref|YP_002512960.1| polynucleotide adenylyltransferase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995371|gb|ACL71973.1| Polynucleotide adenylyltransferase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 465
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 133/250 (53%), Gaps = 18/250 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
G++RA I + + VL L+ GF+A LVGG VRDLLL R PKDFDV T A+ +Q+R+ F
Sbjct: 31 GVSRANISKSALKVLYRLREAGFRACLVGGGVRDLLLGREPKDFDVATDAHPEQVRQLFR 90
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAK--HGEGKETV----------LLSQIPYGC 169
+IGRRF + V +IEV++F + +G+ E ++ YG
Sbjct: 91 NCRLIGRRFRLAHVQFGREIIEVATFRAPHEVLNGDDDEEFNGDALVEDGRIIRDNVYGT 150
Query: 170 DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCA 229
E D WR RDFTIN+L++D + DYA G++DL+ LR + + F ED
Sbjct: 151 IEQDA--WR----RDFTINALYYDIEDFSVVDYAGGMADLKAGVLRLIGDPEVRFREDPV 204
Query: 230 RILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
R+LR +R A +LG + A+ ++ +E + +R+ E + G + +LR
Sbjct: 205 RMLRAVRFAGKLGFRLDIACEQAIPRMAGLLEEVAPARLFDEAIKLFHSGYGLQTFEMLR 264
Query: 290 RYNLLKILLP 299
R++L + L P
Sbjct: 265 RHDLFRFLFP 274
>gi|427818722|ref|ZP_18985785.1| poly(A) polymerase [Bordetella bronchiseptica D445]
gi|410569722|emb|CCN17836.1| poly(A) polymerase [Bordetella bronchiseptica D445]
Length = 451
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 129/243 (53%), Gaps = 18/243 (7%)
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
+ +D+ GI R + + + V +L+ G++AY+VGG VRDL++ PKDFDV T A
Sbjct: 22 QRIDAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATP 81
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA-------KHGEGKETVLLSQIP 166
+QIR F R+ IIGRRF + V +IE S+F A +HG +L
Sbjct: 82 EQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGR-----ILRDNV 136
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
+G E D R RDFT+N+L++DP ++ DY G+ DL+ ++R + + E
Sbjct: 137 FGSQEEDAAR------RDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYRE 190
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R AA+L S + +++S IE + SR+ E+ +L+ G A +
Sbjct: 191 DPVRMLRAVRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLR 250
Query: 287 LLR 289
LR
Sbjct: 251 QLR 253
>gi|74318068|ref|YP_315808.1| poly(A) polymerase [Thiobacillus denitrificans ATCC 25259]
gi|74057563|gb|AAZ98003.1| poly(A) polymerase, PcnB [Thiobacillus denitrificans ATCC 25259]
Length = 462
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 141/311 (45%), Gaps = 34/311 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + V + L GF+ YLVGG VRDLLL PKDFDV T A +++RR F
Sbjct: 30 GIRREQLDDCALKVCETLAQAGFKGYLVGGAVRDLLLGGTPKDFDVATDATPEEVRRLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAK--------HGEGKETV----------LLS 163
RS IIGRRF I V IEV++F + HG+ LLS
Sbjct: 90 RSRIIGRRFQIVHVMCGRETIEVTTFRANGQKEAEDEDAHGDDAPAASRRLTDEHGRLLS 149
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
+G D R RDFTIN+L++DP +++DY G+ D + LR +
Sbjct: 150 DNVFGSMADDAAR------RDFTINALYYDPAREEVHDYFGGVGDCKKRVLRMIGDPETR 203
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR R AA+L + + +L+ + + ++RI E +L G A
Sbjct: 204 YREDPVRMLRAARFAAKLDFHIDPETRKPVATLAPLLANIPRARIFDEALKLLLSGHALR 263
Query: 284 SICLLRRYNLLKILLPFHAAYLDQQAGK--ITAENPMMLMRLFFNLDKLVSCDRPADYTL 341
+ LR L +LP LD G+ ITA + D + DRP+
Sbjct: 264 GVHQLRAEGLHHGMLPLLDTILDDTTGERFITAA--------LKSTDARIQSDRPSSPAF 315
Query: 342 WVGLLSFHQAL 352
G L + Q +
Sbjct: 316 LFGTLLWPQVV 326
>gi|307546716|ref|YP_003899195.1| poly(A) polymerase [Halomonas elongata DSM 2581]
gi|307218740|emb|CBV44010.1| poly(A) polymerase [Halomonas elongata DSM 2581]
Length = 488
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 123/232 (53%), Gaps = 13/232 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL L + GF+A+LVGGC+RD LL R+PKDFDV T A ++R F S IIGRRF I
Sbjct: 75 VLYRLHNAGFEAFLVGGCIRDALLGRMPKDFDVATDATPDEVRDLFRNSRIIGRRFRIVH 134
Query: 135 VHIKGSVIEVSSFETVAK--HG-----EGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTI 187
V VIEV++F HG + + +LL +G E D +R RDFTI
Sbjct: 135 VRFGREVIEVTTFRGKPNDDHGDHIAQQSDDGMLLRDNVWGNIEEDALR------RDFTI 188
Query: 188 NSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCK 247
N+L+++ I+D+A+G D+ LR + + ED R+LR +R AA+L S +
Sbjct: 189 NALYYNIADFSIHDFADGARDIDARTLRLIGDPATRYREDPVRMLRAIRFAAKLDFSLAR 248
Query: 248 DIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ + L+ + ++ +R+ E+ + G + LLR Y L +L P
Sbjct: 249 ATEEPIEELAPLLLQVPPARLFDEVLKLFMAGHGVETFQLLREYGLFAMLFP 300
>gi|418288057|ref|ZP_12900577.1| poly(A) polymerase [Neisseria meningitidis NM233]
gi|418290317|ref|ZP_12902481.1| poly(A) polymerase [Neisseria meningitidis NM220]
gi|372201804|gb|EHP15685.1| poly(A) polymerase [Neisseria meningitidis NM220]
gi|372202660|gb|EHP16441.1| poly(A) polymerase [Neisseria meningitidis NM233]
Length = 477
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG +RDLLL PKDFDV T A +Q+ + F RS I+GRRF I
Sbjct: 68 VIRRLKEAGFQAYVVGGAIRDLLLGIEPKDFDVATDAMPEQVHKLFRRSRIVGRRFQIVH 127
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 128 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 181
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 182 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETTA--- 238
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 239 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 298
Query: 310 GKIT 313
GK+T
Sbjct: 299 GKMT 302
>gi|307719260|ref|YP_003874792.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192]
gi|306532985|gb|ADN02519.1| polyA polymerase family protein [Spirochaeta thermophila DSM 6192]
Length = 364
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 131/239 (54%), Gaps = 16/239 (6%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R I + +V++ L+ G AY+VGG VRDLLL + PKDFD++T A +I+R F
Sbjct: 29 GIRREAIDHHALMVIRRLRKAGHAAYVVGGAVRDLLLGKHPKDFDIVTCATPGRIKRLFP 88
Query: 122 RSEIIGRRFPICRVHI-KGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNS 180
+ +IGRRF + V++ K +EV++F + YG E D R
Sbjct: 89 YARVIGRRFRLVHVYVTKEEYVEVTTFRSARADDPNA---------YGSIEEDAFR---- 135
Query: 181 IHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAAR 240
RDFT+N+L++DPF +I D+ +G + +R +L +IP F ED R+LR ++ AR
Sbjct: 136 --RDFTVNALYYDPFSEEILDFVDGFTHVRERRLVPIIPLDRIFEEDPVRMLRAVKYHAR 193
Query: 241 LGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ L K++ + + +E + SR+ E+ +L+ G A S L+R++L LLP
Sbjct: 194 MELEMPKELVRKIRDDAWRLEEVSASRLTEEIYKILACGEASSVWDALQRFHLFDHLLP 252
>gi|320536493|ref|ZP_08036527.1| poly(A) polymerase [Treponema phagedenis F0421]
gi|320146702|gb|EFW38284.1| poly(A) polymerase [Treponema phagedenis F0421]
Length = 399
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 18/227 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L S G++ ++VGG VRDLLL R+PKDFD+ T+A +I++ F S IIG+RF +
Sbjct: 39 IIQTLHSAGYEGFIVGGAVRDLLLGRIPKDFDIATSAEPSKIKKLFRNSRIIGKRFRLVH 98
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
+ + E+S+F ++ G + +G E D+ R RDFTIN+L++DP
Sbjct: 99 IFYGPKIYEISTFRSIEDGSVGNK--------FGTIEEDVQR------RDFTINALYYDP 144
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR--IAARLGLSFCKDIDTA 252
N I DY G+ DLR +LR +IP F+ED R+LR ++ I A+ + F +
Sbjct: 145 IKNLIIDYVGGLHDLRKNRLRAIIPLKNIFSEDPVRMLRAIKYSILAKAKIPFL--LSCR 202
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+H +S +E SR+ ELN + G ++ I L Y L L P
Sbjct: 203 LHRDTSLLEYCSPSRLTEELNKIFHSGYSKPIIERLLHYELFLYLQP 249
>gi|261364589|ref|ZP_05977472.1| poly(A) polymerase [Neisseria mucosa ATCC 25996]
gi|288567172|gb|EFC88732.1| poly(A) polymerase [Neisseria mucosa ATCC 25996]
Length = 447
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 8/213 (3%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+K L+ +GF+AY+VGG VRDLLL PKDFDV T A +Q+R+ F RS IIGRRF I
Sbjct: 44 TVKRLQEEGFKAYIVGGAVRDLLLGVEPKDFDVATDATPEQVRKIFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V IEV++F K + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMTGPETIEVTTFRGGGKVQQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NG++D+ L + A + ED RILR +R++ +LG S + +
Sbjct: 158 ICEEILDFHNGVNDIAARSLVMIGDAAERYREDPVRILRAVRLSGKLGFSVEESTAAPIP 217
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
+S ++ +R+ E+ +L G A CL
Sbjct: 218 EYASRLKHEPVARLFDEIMKLLFSGHARE--CL 248
>gi|448747678|ref|ZP_21729334.1| Poly(A) polymerase, PcnB [Halomonas titanicae BH1]
gi|445564790|gb|ELY20906.1| Poly(A) polymerase, PcnB [Halomonas titanicae BH1]
Length = 460
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 13/244 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + VL L GF AYLVGGC+RD LL ++PKDFDV T A +Q+R F
Sbjct: 42 VSRQHISDAALKVLYRLSGAGFDAYLVGGCIRDALLGKMPKDFDVATNATPEQVRDLFRN 101
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVR---WRN 179
S +IGRRF I V VIEV++F + G I + DE L+R W N
Sbjct: 102 SRLIGRRFRIVHVRFGREVIEVTTFRGKPQDEHG------DHIAHQSDEGLLLRDNVWGN 155
Query: 180 ----SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGL 235
++ RDFT+N+L+++ I D+ANG D++ LR + + ED R+LR +
Sbjct: 156 IEEDALRRDFTVNALYYNIADFSITDFANGAEDIKTRTLRLIGDPATRYREDPVRMLRAV 215
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R AA+L + + M+ + + ++ +R+ E+ + G + LL Y L
Sbjct: 216 RFAAKLDFTLDPATEAPMYDQAPLLLQIPPARLFDEVLKLFMSGHGLVTFRLLSHYGLFG 275
Query: 296 ILLP 299
+L P
Sbjct: 276 MLFP 279
>gi|378822167|ref|ZP_09844987.1| poly(A) polymerase [Sutterella parvirubra YIT 11816]
gi|378599012|gb|EHY32080.1| poly(A) polymerase [Sutterella parvirubra YIT 11816]
Length = 479
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 136/252 (53%), Gaps = 8/252 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A++ + + L +G++AY+VGG VRDLLL PKDFDV T A ++++R
Sbjct: 34 GIDPALVSWQARKTCEALHRRGYKAYIVGGAVRDLLLGVSPKDFDVATDATPEEVKRAQR 93
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--LLSQIPYGCDEIDLVRWRN 179
R+ IIGRRF + V VIE S+F + G K+ ++S +G E+ W +
Sbjct: 94 RAVIIGRRFRLVHVMFGTEVIECSTFRALEGAGVRKDAAGRVVSDNVFG--EM----WED 147
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
+ RDFTIN+L++DP +++DY G D+ +LR + + ED R++R +RIAA
Sbjct: 148 AARRDFTINALYYDPATEELFDYHQGFEDIEARRLRMIGVPEERYREDPVRMMRAVRIAA 207
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+LG + + + + + + +R++ EL + + G A + + LR L K +LP
Sbjct: 208 KLGFRIERATERPIPKMGKLLMNVPSARLVDELLKLFTCGHAVACLKKLREEGLDKAILP 267
Query: 300 FHAAYLDQQAGK 311
+ L + G+
Sbjct: 268 VLSVVLSEPDGE 279
>gi|241760511|ref|ZP_04758604.1| poly(A) polymerase [Neisseria flavescens SK114]
gi|241319015|gb|EER55517.1| poly(A) polymerase [Neisseria flavescens SK114]
Length = 450
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 140/274 (51%), Gaps = 11/274 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI M+ + + K L GFQAY+VGG VRDLLL PKDFD+ T A +QIR+ F
Sbjct: 30 GIRADMLSFAAEKIAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKVFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
RS IIGRRF I V I IEV++F K + + ++ YG E D +R
Sbjct: 90 RSRIIGRRFQIVHVMIGPETIEVTTFRGGDKVQQNAQGRIMKDNTYGSIEEDAMR----- 144
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT N+L++DP +I+D+ G++D+ KL + + ED RILR +R++ +L
Sbjct: 145 -RDFTCNALYYDPIKEEIWDFHQGVADVADKKLVMIGDPAERYQEDPVRILRAVRLSGKL 203
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
G + + + ++ +R+ E+ +L G S C L+R N L I H
Sbjct: 204 GFEVEEQTALPIAEYAGRLKNEPVARLFDEILKILFSG--HSRAC-LKRLNELGIPEGIH 260
Query: 302 AAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
LD A+ M+++ L N D+ + D+
Sbjct: 261 -PLLDALKTAEAADKRMIMLAL-KNTDERIRADK 292
>gi|408794509|ref|ZP_11206114.1| poly(A) polymerase [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408461744|gb|EKJ85474.1| poly(A) polymerase [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 493
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 11/220 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I RA I + + ++ L ++AYLVGG VRDLL+ + PKDFD++T+A QI+R F+
Sbjct: 34 SIRRANIDEDAIKIINRLNKFRYKAYLVGGGVRDLLMGKRPKDFDIVTSATPNQIKRIFN 93
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-----KHGEGKETVLLSQIPYGCDEIDLVR 176
IIG+RF I + KG +IEVS+F ++ KH + ++ +G + D R
Sbjct: 94 NCRIIGKRFKIVHIIFKGKIIEVSTFRSLPEHRLEKHKAENDYLIKRDNSFGTAKEDAAR 153
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFTINSLF+DP + I DY G D++ +R + +SF ED R+LR ++
Sbjct: 154 ------RDFTINSLFYDPKNDSILDYVGGFEDIQKKIVRVIGDPDISFKEDPVRMLRAVK 207
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ LGL K A+ +E+ +R++ E N M
Sbjct: 208 FSVLLGLDIEKKTKLAIKKNRLELEKSSTARLLEEYNKMF 247
>gi|339327137|ref|YP_004686830.1| poly(A) polymerase [Cupriavidus necator N-1]
gi|338167294|gb|AEI78349.1| poly(A) polymerase PcnB [Cupriavidus necator N-1]
Length = 513
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 143/299 (47%), Gaps = 28/299 (9%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+QAY+VGG VRDLLL PKDFDV T A Q++ F RS IIGRRF I
Sbjct: 48 VTSTLQQAGYQAYIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSRIIGRRFQIVH 107
Query: 135 VHIKGS----VIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDEIDLV------ 175
V G +IEVS+F ET+ + K L S+ + D V
Sbjct: 108 VTFYGGREQEIIEVSTFRALVDAIASETLPEGRRLKRAELDSKT-HAIDASGRVLRDNVW 166
Query: 176 --RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+ ++ RDFTIN++++DP ++DY +G+ D+R LR + + ED R+LR
Sbjct: 167 GSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDPVTRYREDPIRMLR 226
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+ G + + L+S I + +R+ E+ +L G A +S+ LR+ L
Sbjct: 227 VVRFAAKTGFDIDEATRHPIAGLASLIHNVPSARLFDEMLKLLMSGHAWASLQELRKAGL 286
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
+ LLP L+Q G+ + N D+ V +P L +H L
Sbjct: 287 HQGLLPLLDVALEQPMGQ------RFVQLALDNTDRRVQAGKPVSPGFLFAALLWHHVL 339
>gi|441503470|ref|ZP_20985476.1| Poly(A) polymerase [Photobacterium sp. AK15]
gi|441428968|gb|ELR66424.1| Poly(A) polymerase [Photobacterium sp. AK15]
Length = 446
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 142/288 (49%), Gaps = 25/288 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R I + + VL L G+ AYLVGG VRDLLL + PKDFD+ T A ++I++ F
Sbjct: 10 GISRKDISENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEEIKKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK--------------ETVLLSQIPY 167
+IGRRF + + VIEV++F H + K E +LL Y
Sbjct: 70 NCRLIGRRFRLAHILFGRDVIEVATFR--GHHADAKPNIRNKQNISAQNQEGMLLRDNVY 127
Query: 168 GCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
G + D R RDFTIN+L++ + DYANG+ DL +R + + ED
Sbjct: 128 GTIDEDAER------RDFTINALYYSIKDFTVSDYANGVHDLENRIVRLMGDPETRYRED 181
Query: 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
R+LR +R AA+L + + +H LS+ ++ + +R+ E +L G + L
Sbjct: 182 PVRMLRAVRFAAKLDMDIEEKTAAPIHQLSTLLQDIPAARLFEESLKLLQSGNGLETYKL 241
Query: 288 LRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
LR YNL + L P + + ++ T + M+ + DK + D+
Sbjct: 242 LRHYNLFQQLFPLLSEHFTEEQNSQTEQ---MIEHILAATDKRIVEDK 286
>gi|359394187|ref|ZP_09187240.1| Poly(A) polymerase [Halomonas boliviensis LC1]
gi|357971434|gb|EHJ93879.1| Poly(A) polymerase [Halomonas boliviensis LC1]
Length = 460
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 13/244 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + VL L GF AYLVGGC+RD LL ++PKDFDV T A +Q+R F
Sbjct: 42 VSRQHISDAALKVLYRLSGAGFDAYLVGGCIRDALLGKMPKDFDVATNATPEQVRDLFRN 101
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVR---WRN 179
S +IGRRF I V VIEV++F + G I + DE L+R W N
Sbjct: 102 SRLIGRRFRIVHVRFGREVIEVTTFRGKPQDEHG------DHIAHQSDEGLLLRDNVWGN 155
Query: 180 ----SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGL 235
++ RDFT+N+L+++ I D+ANG D++ LR + + ED R+LR +
Sbjct: 156 IEEDALRRDFTVNALYYNIADFSITDFANGAEDIKTRTLRLIGDPATRYREDPVRMLRAV 215
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R AA+L + + M+ + + ++ +R+ E+ + G + LL Y L
Sbjct: 216 RFAAKLDFTLDPATEAPMYDQAPLLLQIPAARLFDEVLKLFMSGHGLVTFRLLSHYGLFG 275
Query: 296 ILLP 299
+L P
Sbjct: 276 MLFP 279
>gi|386347360|ref|YP_006045609.1| poly(A) polymerase [Spirochaeta thermophila DSM 6578]
gi|339412327|gb|AEJ61892.1| poly(A) polymerase [Spirochaeta thermophila DSM 6578]
Length = 364
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 131/239 (54%), Gaps = 16/239 (6%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R I + +V++ L+ G AY+VGG VRDLLL + PKDFD++T A +I+R F
Sbjct: 29 GIRREAIDHHALMVIRRLRKAGHTAYVVGGAVRDLLLGKHPKDFDIVTCATPGRIKRLFP 88
Query: 122 RSEIIGRRFPICRVHI-KGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNS 180
+ +IGRRF + V++ K +EV++F + YG E D R
Sbjct: 89 YARVIGRRFRLVHVYVTKDEYVEVTTFRSARADDPNA---------YGSIEEDAFR---- 135
Query: 181 IHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAAR 240
RDFT+N+L++DPF +I D+ +G + +R +L +IP F ED R+LR ++ AR
Sbjct: 136 --RDFTVNALYYDPFSEEILDFVDGFTHVRERRLVPIIPLDRIFEEDPVRMLRAVKYHAR 193
Query: 241 LGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ L K++ + + +E + SR+ E+ +L+ G A S L+R++L LLP
Sbjct: 194 MELEMPKELVRKIRDDAWRLEEVSTSRLTEEIYKILACGEASSVWEALQRFHLFDHLLP 252
>gi|89898029|ref|YP_515139.1| Poly (A) polymerase [Chlamydophila felis Fe/C-56]
gi|89331401|dbj|BAE80994.1| Poly (A) polymerase [Chlamydophila felis Fe/C-56]
Length = 427
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L+ G++AY+VGGC+RDLLL PKDFD+ T+A ++I+ F ++G+RF +
Sbjct: 48 VVKTLRKAGYKAYIVGGCIRDLLLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G E ++++ +G E D++R RDFTIN LF+D
Sbjct: 108 IRFSNQIIEVSTFRS----GSADEDSLIIKDNLWGTAEEDVLR------RDFTINGLFYD 157
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+SDL LRT+ ++ F +D R+LR L+I +R + A+
Sbjct: 158 PTEETIIDYTGGVSDLENRYLRTIGDPFVRFKQDPVRMLRLLKILSRAQFTVDPKTLEAL 217
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + ++R+ EL ML G + L Y +L+IL P+
Sbjct: 218 RECRYELIKSSQARVFEELIKMLGSGVSSKFFKLTVEYQILEILFPY 264
>gi|294635067|ref|ZP_06713582.1| polyA polymerase [Edwardsiella tarda ATCC 23685]
gi|451965755|ref|ZP_21919012.1| poly(A) polymerase [Edwardsiella tarda NBRC 105688]
gi|291091532|gb|EFE24093.1| polyA polymerase [Edwardsiella tarda ATCC 23685]
gi|451315557|dbj|GAC64374.1| poly(A) polymerase [Edwardsiella tarda NBRC 105688]
Length = 457
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 149/320 (46%), Gaps = 31/320 (9%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF AYLVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 ISRQQISENALKVLYRLNKSGFDAYLVGGGVRDLLLGKRPKDFDVTTNATPEQVRKLFRN 86
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG--------EGKETVLLSQIPYGCDEIDL 174
++GRRF + V +IEV++F +H +GK +LL YG E D
Sbjct: 87 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEHADEGKNISQQGKNGMLLRDNVYGNIEEDA 146
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++ + DY G++DLR +R + + ED R+LR
Sbjct: 147 QR------RDFTINSLYYSVADFTVRDYTGGLNDLRAGLIRLIGDPETRYREDPVRMLRA 200
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L + + + L+ + + +R+ E +L G + LR Y L
Sbjct: 201 VRFAAKLRMDISPETAAPIARLAPLLRDIPAARLFEEALKLLQAGYGYETYLKLREYQLF 260
Query: 295 KILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWVGLL 346
+ L P + ++PM +L ++ N D + D PA LW L+
Sbjct: 261 QPLFPVICRHFTP-----NGDSPMENILAQVLKNTDHRLQNDMRVNPAFLFAAMLWYPLI 315
Query: 347 SFHQALVSDP----QDAFVV 362
Q + + DAF +
Sbjct: 316 ELAQKITQEGGLTYHDAFAL 335
>gi|149917655|ref|ZP_01906151.1| poly(A) polymerase [Plesiocystis pacifica SIR-1]
gi|149821437|gb|EDM80837.1| poly(A) polymerase [Plesiocystis pacifica SIR-1]
Length = 486
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 162/348 (46%), Gaps = 25/348 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ L + +AYLVGGCVRDL L R PKDFDV T+A +QIRR F S IIGRRF +
Sbjct: 43 VVRKLLAANHEAYLVGGCVRDLYLNRKPKDFDVATSARPEQIRRVFRNSRIIGRRFKLAH 102
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLV-----RW----RNSIHRDF 185
V +IE S+F T K E T G DL+ W ++ RDF
Sbjct: 103 VFFGSKIIETSTFRTNPKEEEHAATSEGDAAAEGGGGGDLLITHDNSWGDIKDDARRRDF 162
Query: 186 TINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSF 245
TIN LF+D I D+ +G+ DL +RT+ + F ED R++R ++ AARL +
Sbjct: 163 TINGLFYDIERRAIVDFVDGVRDLDRGIIRTIGEPEVRFREDPVRMIRAIKFAARLDFTV 222
Query: 246 CKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL 305
D A+ + I R ++R++ EL +L G++ + L+ + L + + P + A
Sbjct: 223 EMDSWQALLRCAPDIARCSRARLVEELYKLLRGGSSRRAFELMIQAELFQHIWPDYIALY 282
Query: 306 DQQAG--KITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVW 363
D G + + ++P L F L + D DY L G P + +
Sbjct: 283 DASGGLHRPSRKDPPDLPSALF-WRYLAALD---DYVLETG---------QTPSNGVIQA 329
Query: 364 VFASVLYHGKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKV 411
+ + L HG+ E + D E P + D +LA ++
Sbjct: 330 ILFAPLLHGQLLEANRAELDALIEDT-MTPPCAALGVARRDRELARQI 376
>gi|333982095|ref|YP_004511305.1| poly(A) polymerase [Methylomonas methanica MC09]
gi|333806136|gb|AEF98805.1| poly(A) polymerase [Methylomonas methanica MC09]
Length = 475
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 11/242 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+RA I + + VL+ LK + AYLVGGCVRDLLL R PKDFDV T A+ +Q+++ F
Sbjct: 55 ISRAQISENALKVLQRLKKADYDAYLVGGCVRDLLLGREPKDFDVATNASPEQVKQVFRN 114
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV-----LLSQIPYGCDEIDLVRW 177
IIGRRF + V +IEV++F ++ V LL +G E D+ W
Sbjct: 115 CRIIGRRFRLAHVFFGREIIEVATFRGSETAESDRQVVHEDGRLLRDNVFGTLEEDV--W 172
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
R RDFT+N+L+++ + DY G+ D LR + + + ED R+LR +R
Sbjct: 173 R----RDFTVNALYYNIRDFSVVDYTGGMQDHANAVLRLIGDPDVRYREDPVRMLRAIRF 228
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A +LG + D + +H+ + ++ + +R+ E + G + +LR + L +L
Sbjct: 229 AVKLGFTLHPDTEQPIHTQAELLKSIPAARLYDEALKLFLAGYGVQTFEMLRHFGLFAML 288
Query: 298 LP 299
P
Sbjct: 289 FP 290
>gi|421749082|ref|ZP_16186581.1| poly(A) polymerase [Cupriavidus necator HPC(L)]
gi|409772111|gb|EKN54214.1| poly(A) polymerase [Cupriavidus necator HPC(L)]
Length = 501
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 144/304 (47%), Gaps = 38/304 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+QA++VGG VRDLLL PKDFDV T A +Q++ F RS IIGRRF I
Sbjct: 48 VTSTLQQAGYQAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSRIIGRRFQIVH 107
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYG-----------CDEID----LV 175
V G +IEVS+F + + V +P G ID ++
Sbjct: 108 VTFYGGREQEIIEVSTFRALV------DAVASETLPEGRRLKRAELDNKTHAIDASGRVL 161
Query: 176 R---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
R W ++ RDFTIN++++DP ++DY +G+ D+R LR + + ED
Sbjct: 162 RDNVWGSQAEDAERRDFTINAMYYDPAEQTVHDYHHGMEDMRARTLRMIGDPVTRYREDP 221
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G + + L+S I + +R+ E+ +L G A +S+ L
Sbjct: 222 VRMLRVVRFAAKTGFDIDEATRQPIADLASLIHNVPSARLFDEMLKLLMSGHAWASLQEL 281
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
R+ L K LLP ++Q G+ + N D+ V +P L +
Sbjct: 282 RKAGLHKGLLPLLDVAIEQPLGQ------RFVQLALDNTDRRVQAGKPVSPGFLFAALLW 335
Query: 349 HQAL 352
H L
Sbjct: 336 HHVL 339
>gi|227358020|ref|ZP_03842362.1| polynucleotide adenylyltransferase [Proteus mirabilis ATCC 29906]
gi|227161755|gb|EEI46787.1| polynucleotide adenylyltransferase [Proteus mirabilis ATCC 29906]
Length = 507
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 147/283 (51%), Gaps = 26/283 (9%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L + GFQAYLVGG VRDLLL + PKDFD+ T A +++RR F
Sbjct: 72 ISRKDISDNALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEEVRRLFRN 131
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF-------ETVAKH--GEGKETVLLSQIPYGCDEID 173
S ++GRRF + + VIEV++F ET ++ + + +LL +G E D
Sbjct: 132 SRLVGRRFRLAHIMFGPEVIEVATFRGSHEDHETSDRNQSQQAQSGMLLRDNIFGSIEED 191
Query: 174 LVRWRNSIHRDFTINSLFF--DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
+R RDFT+NSL++ D F + DY G++DL+ +R + + ED R+
Sbjct: 192 AIR------RDFTLNSLYYGVDDF--AVRDYVGGLADLKSGTIRLIGSPETRYREDPVRM 243
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A++L + + + L+ + + +R+ E +L G + L+R +
Sbjct: 244 LRAIRFASKLDMRIAPETAEPISQLAPLLRNIPSARLFEESLKLLQTGHGYKTYRLMRHF 303
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVS 332
LL+ L P A+ + +Q + PM M+ ++ N D +S
Sbjct: 304 QLLEPLFPLVASRITEQ-----QDTPMERMIEQVLKNTDYRIS 341
>gi|15835306|ref|NP_297065.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg]
gi|270285478|ref|ZP_06194872.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg]
gi|270289489|ref|ZP_06195791.1| poly(A) polymerase family protein [Chlamydia muridarum Weiss]
gi|301336875|ref|ZP_07225077.1| poly(A) polymerase family protein [Chlamydia muridarum MopnTet14]
gi|7190722|gb|AAF39507.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg]
Length = 425
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 141/261 (54%), Gaps = 24/261 (9%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK G++AY+VGGC+RDLLL+ PKDFDV T+A ++++ F ++G+RF +
Sbjct: 49 VVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDVSTSAKPEEVKALFKNCILVGKRFRLAH 108
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEVS+F + G +E L+++ +G E D++R RDFTIN LF+D
Sbjct: 109 IRFPNQIIEVSTF----RSGSNEEDSLITKDNLWGSAEEDVLR------RDFTINGLFYD 158
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+ DL+ LRT+ +L F +D R+LR L+I +R F D T +
Sbjct: 159 PSSEVIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA--FTVDPKT-L 215
Query: 254 HSLSSSIERLDKS---RIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL----- 305
+L S L KS R+ EL +LS G + L Y +L+IL P+ +
Sbjct: 216 EALRESRHELIKSSQPRVFEELIKVLSSGESTIFFQLASEYRILEILFPYMSKAFGLSKV 275
Query: 306 --DQQAGKITAENPMMLMRLF 324
DQ +TA + + R F
Sbjct: 276 LQDQTFASLTALDAKVRQRSF 296
>gi|336125067|ref|YP_004567115.1| poly(A) polymerase [Vibrio anguillarum 775]
gi|365539974|ref|ZP_09365149.1| poly(A) polymerase [Vibrio ordalii ATCC 33509]
gi|335342790|gb|AEH34073.1| Poly(A) polymerase [Vibrio anguillarum 775]
Length = 463
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 90/256 (35%), Positives = 128/256 (50%), Gaps = 18/256 (7%)
Query: 52 NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTA 111
N T D N I+R I + VL L GF AYLVGG VRDLLL PKDFD+ T A
Sbjct: 30 NIITRDEHN--ISRKQISDNALKVLYRLHGAGFDAYLVGGGVRDLLLGETPKDFDIATNA 87
Query: 112 NLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLS 163
+QIR+QF +IGRRF + + V+EV++F H E + V LL
Sbjct: 88 TPEQIRQQFRNCRLIGRRFRLAHIMFGRDVVEVATFR--GHHQEPSQNVSAQSEAGMLLR 145
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG + D R RDFTIN+++++ I+DYA G+ DL +R +
Sbjct: 146 DNVYGTIDEDAER------RDFTINAMYYNIGDYSIHDYAGGMDDLEDKLIRLIGDPETR 199
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R AA+L ++ + L+ ++ + +R+ E ML G
Sbjct: 200 YREDPVRMLRAIRFAAKLDFDIEEETADPIEHLAPLLQDIPAARLYEESLKMLQTGHGLE 259
Query: 284 SICLLRRYNLLKILLP 299
+ L+R YNL + L P
Sbjct: 260 TYHLMREYNLFQQLFP 275
>gi|352104788|ref|ZP_08960541.1| poly(A) polymerase [Halomonas sp. HAL1]
gi|350598710|gb|EHA14820.1| poly(A) polymerase [Halomonas sp. HAL1]
Length = 460
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 13/244 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + VL L GF AYLVGGC+RD LL ++PKDFDV T A +Q+R F
Sbjct: 42 VSRQHISDAALKVLYRLSGAGFDAYLVGGCIRDALLGKMPKDFDVATNATPEQVRDLFRN 101
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVR---WRN 179
S +IGRRF I V VIEV++F + G I + DE L+R W N
Sbjct: 102 SRLIGRRFRIVHVRFGREVIEVTTFRGKPQDEHG------DHIAHQSDEGLLLRDNVWGN 155
Query: 180 ----SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGL 235
++ RDFT+N+L+++ I D+ANG D++ LR + + ED R+LR +
Sbjct: 156 IEEDALRRDFTVNALYYNIADFSITDFANGAEDIKTRTLRLIGDPATRYREDPVRMLRAV 215
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R AA+L + + M+ + + ++ +R+ E+ + G + LL Y L
Sbjct: 216 RFAAKLDFTLDPATEEPMYDQAPLLLQIPPARLFDEVLKLFMSGHGLVTFRLLSHYGLFG 275
Query: 296 ILLP 299
+L P
Sbjct: 276 MLFP 279
>gi|387131369|ref|YP_006294259.1| Poly(A) polymerase [Methylophaga sp. JAM7]
gi|386272658|gb|AFJ03572.1| Poly(A) polymerase [Methylophaga sp. JAM7]
Length = 453
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 145/275 (52%), Gaps = 10/275 (3%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R +I + VL LK G+ AYLVGGCVRD+LL PKDFD+ T A +Q+ + F R
Sbjct: 38 ISRKVISPSALKVLYTLKDAGYDAYLVGGCVRDILLGYEPKDFDIATNALPEQVHQLFRR 97
Query: 123 SEIIGRRFPICRVHI-KGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
S +IGRRF + V + +IEV++F + ++ ++ YG E D WR
Sbjct: 98 SRMIGRRFKLVHVRFGRNEIIEVATFRAPPEAENQQDGRIMQDNVYGTLEQDA--WR--- 152
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFTIN+L+++ I DY GI+DL+ +R + + + ED R+LR LR A+L
Sbjct: 153 -RDFTINALYYNIADFTIVDYTGGIADLQQGLIRLIGEQRVRYREDPVRMLRALRFKAKL 211
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
GL+ + + L++ ++ + +R+ E + G A + LL +Y + + L P
Sbjct: 212 GLALESVTEKHITELAALLKDIPPARLFDETLKLYLSGQAVQTHQLLCQYGIFEALFPQT 271
Query: 302 AAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
AA L + + E +LM N D+ + +P
Sbjct: 272 AACLQTEGHE---EARRLLMGALENTDRRLQQGKP 303
>gi|242240239|ref|YP_002988420.1| poly(A) polymerase I [Dickeya dadantii Ech703]
gi|242132296|gb|ACS86598.1| poly(A) polymerase [Dickeya dadantii Ech703]
Length = 449
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 155/314 (49%), Gaps = 25/314 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+ I + + VL L G++AYLVGG VRDLLL + PKDFD+ T A +Q+R+ F
Sbjct: 20 ISRSDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPEQVRKLFRN 79
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF--------ETVAKHG--EGKETVLLSQIPYGCDEI 172
++GRRF + V VIEV++F E K+ + + +LL +G E
Sbjct: 80 CRLVGRRFRLAHVMFGPEVIEVATFRGHHEQHQEQQVKNASQQDQNGMLLRDNIFGTIEE 139
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDF+INSL++ + DY NG++DLR +R L + ED R+L
Sbjct: 140 DAQR------RDFSINSLYYSIADFTVRDYTNGVNDLRQGIIRLLGDPETRYREDPVRML 193
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R AA+LG+ + + LSS + + +R+ E +L G + LL Y
Sbjct: 194 RAVRFAAKLGMKISPETAEPIPRLSSLLHDIPPARLFEEALKLLQAGYGYPTYQLLCEYQ 253
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD---RPA---DYTLWVGLL 346
L + L P + L G+ T E ML+++ N D+ + D PA LW L+
Sbjct: 254 LFQPLFPLLSRDLTAN-GESTMER--MLVQVLKNTDQRIQNDMRVNPAFLFSAMLWYPLV 310
Query: 347 SFHQALVSDPQDAF 360
Q L + A+
Sbjct: 311 EHAQKLTQESGLAY 324
>gi|384085537|ref|ZP_09996712.1| poly(A) polymerase [Acidithiobacillus thiooxidans ATCC 19377]
Length = 494
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 132/252 (52%), Gaps = 15/252 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GFQAY+VGG VRDLLL R PKDFDV T A+ +Q+R+ F R
Sbjct: 46 ISRRDISDGALQVLNGLHRAGFQAYMVGGGVRDLLLGREPKDFDVATDAHPEQVRKLFRR 105
Query: 123 -SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV-------LLSQIPYGCDEIDL 174
+ +IGRRF + V +IEV++F A G+ KE +L+ YG E D
Sbjct: 106 NARLIGRRFILVHVQFGSEIIEVATFRGGAD-GKKKEASERSESGRILADNVYGSLEEDA 164
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT N+L+++ I D++ G+ DLR LR + + ED R+LR
Sbjct: 165 RR------RDFTANALYYNIADRGILDFSTGMEDLRAGLLRIIGDPEQRYREDPVRMLRA 218
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+LG + + + + ++ + +R+ E + G A SS LLR++ L
Sbjct: 219 VRFAAKLGFTLDEAARAPISTCRDCLQEVPSARLFEETLKLFLNGNARSSFELLRQHGLF 278
Query: 295 KILLPFHAAYLD 306
L P A LD
Sbjct: 279 AALFPQVDALLD 290
>gi|427827889|ref|ZP_18994910.1| poly(A) polymerase family protein [Neisseria meningitidis H44/76]
gi|316984249|gb|EFV63225.1| poly(A) polymerase family protein [Neisseria meningitidis H44/76]
Length = 470
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 132/244 (54%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 36 VIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 95
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 96 VMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 149
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 150 EKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 206
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLL-KILLPFHAAYL-DQQA 309
++ SI RL +R+ E+ +L G A + L +++ I L +A + D A
Sbjct: 207 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHLLLNALRVSDGIA 266
Query: 310 GKIT 313
GK+T
Sbjct: 267 GKMT 270
>gi|421890873|ref|ZP_16321714.1| poly(A) polymerase I [Ralstonia solanacearum K60-1]
gi|378963783|emb|CCF98462.1| poly(A) polymerase I [Ralstonia solanacearum K60-1]
Length = 516
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 138/304 (45%), Gaps = 38/304 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+ A++VGG VRDLLL PKDFDV T A +Q++ F RS IIGRRF I
Sbjct: 73 VTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSRIIGRRFQIVH 132
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------------------- 169
V G +IEVS+F + + V Q+P G
Sbjct: 133 VTFYGGREQEIIEVSTFRALV------DAVESEQVPAGKRVKRTELDHHTHAVDASGRVL 186
Query: 170 -DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
D + + ++ RDFT+N+++++P +YDY G+ D+R LR + + + ED
Sbjct: 187 RDNVWGTQAEDATRRDFTVNAMYYNPADQTVYDYHRGMEDMRARLLRMIGDPHTRYREDP 246
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G + L I + +R+ E+ +L G A +S+ L
Sbjct: 247 VRMLRAVRFAAKTGFGIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQEL 306
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
R+ L + LLP L+Q G+ + N D+ V +P L +
Sbjct: 307 RKAGLHRGLLPLLDVALEQPMGE------RFVQLALDNTDERVKAGKPVSPGFLFASLLW 360
Query: 349 HQAL 352
H L
Sbjct: 361 HHVL 364
>gi|385324418|ref|YP_005878857.1| poly(A) polymerase (PAP; plasmid copy number protein) [Neisseria
meningitidis 8013]
gi|421544208|ref|ZP_15990286.1| poly(A) polymerase [Neisseria meningitidis NM140]
gi|421546318|ref|ZP_15992367.1| poly(A) polymerase [Neisseria meningitidis NM183]
gi|421552612|ref|ZP_15998586.1| poly(A) polymerase [Neisseria meningitidis NM576]
gi|261392805|emb|CAX50386.1| poly(A) polymerase (PAP; plasmid copy number protein) [Neisseria
meningitidis 8013]
gi|402324053|gb|EJU59491.1| poly(A) polymerase [Neisseria meningitidis NM183]
gi|402324320|gb|EJU59756.1| poly(A) polymerase [Neisseria meningitidis NM140]
gi|402331244|gb|EJU66585.1| poly(A) polymerase [Neisseria meningitidis NM576]
Length = 453
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 132/244 (54%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLL-KILLPFHAAYL-DQQA 309
++ SI RL +R+ E+ +L G A + L +++ I L +A + D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHLLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|15676739|ref|NP_273884.1| poly(A) polymerase [Neisseria meningitidis MC58]
gi|433464824|ref|ZP_20422309.1| poly(A) polymerase family protein [Neisseria meningitidis NM422]
gi|433488073|ref|ZP_20445241.1| poly(A) polymerase family protein [Neisseria meningitidis M13255]
gi|433490193|ref|ZP_20447322.1| poly(A) polymerase family protein [Neisseria meningitidis NM418]
gi|433504525|ref|ZP_20461465.1| poly(A) polymerase family protein [Neisseria meningitidis 9506]
gi|433506861|ref|ZP_20463773.1| poly(A) polymerase family protein [Neisseria meningitidis 9757]
gi|433509022|ref|ZP_20465895.1| poly(A) polymerase family protein [Neisseria meningitidis 12888]
gi|433511106|ref|ZP_20467938.1| poly(A) polymerase family protein [Neisseria meningitidis 4119]
gi|7226078|gb|AAF41254.1| polyA polymerase [Neisseria meningitidis MC58]
gi|432204311|gb|ELK60356.1| poly(A) polymerase family protein [Neisseria meningitidis NM422]
gi|432224539|gb|ELK80304.1| poly(A) polymerase family protein [Neisseria meningitidis M13255]
gi|432228101|gb|ELK83802.1| poly(A) polymerase family protein [Neisseria meningitidis NM418]
gi|432242040|gb|ELK97564.1| poly(A) polymerase family protein [Neisseria meningitidis 9506]
gi|432242650|gb|ELK98168.1| poly(A) polymerase family protein [Neisseria meningitidis 9757]
gi|432247836|gb|ELL03271.1| poly(A) polymerase family protein [Neisseria meningitidis 12888]
gi|432248597|gb|ELL04022.1| poly(A) polymerase family protein [Neisseria meningitidis 4119]
Length = 453
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 132/244 (54%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLL-KILLPFHAAYL-DQQA 309
++ SI RL +R+ E+ +L G A + L +++ I L +A + D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHLLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|406914482|gb|EKD53652.1| hypothetical protein ACD_60C00162G0007 [uncultured bacterium]
Length = 447
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 137/259 (52%), Gaps = 12/259 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I Q + VL L G+QAYLVGGCVRDLLL+R PKDFD+ T A + +R+ F
Sbjct: 32 ISRDDINQNALKVLYRLHHAGYQAYLVGGCVRDLLLKRRPKDFDIATNARPEDVRKLFKN 91
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAK-----HGEGKETVLLSQIPYGCDEIDLVRW 177
+IG+RF + + +IEV++F T + G+ +++ YG E D W
Sbjct: 92 CRLIGKRFRLAHILFGREIIEVATFRTHHEKAPELQGKMHHGMIVRDNVYGTIEDDA--W 149
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
R RDFTIN+L+++ + DY +G+ D++ LR + F ED R+LR R
Sbjct: 150 R----RDFTINALYYNIANFSVVDYVDGMHDIKARLLRIIGEPEQRFHEDPVRLLRAARF 205
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
+L L+ + + ++ LS ++ + +R+ E+ GA + +L++Y+L + L
Sbjct: 206 IGKLNLTVSPETEHTLNQLSHLLQNVSPARLFQEVLKFFQEGATVETFHVLQKYHLFEQL 265
Query: 298 LPFHAAYL-DQQAGKITAE 315
AA L D+ K+ E
Sbjct: 266 FSQTAACLADRHTKKLIEE 284
>gi|261380692|ref|ZP_05985265.1| poly(A) polymerase [Neisseria subflava NJ9703]
gi|284796403|gb|EFC51750.1| poly(A) polymerase [Neisseria subflava NJ9703]
Length = 450
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 140/274 (51%), Gaps = 11/274 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI M+ + + K L GFQAY+VGG VRDLLL PKDFD+ T A +QIR+ F
Sbjct: 30 GIHADMLSFAAEKIAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKIFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
RS IIGRRF I V I IEV++F K + + ++ YG E D +R
Sbjct: 90 RSRIIGRRFQIVHVMIGPETIEVTTFRGGDKVQQNAQGRIMKDNTYGSIEEDAMR----- 144
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT N+L++DP +I+D+ G++D+ KL + + ED RILR +R++ +L
Sbjct: 145 -RDFTCNALYYDPIKEEIWDFHQGVADVADKKLVMIGNPAERYQEDPVRILRAVRLSGKL 203
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
G + + + ++ +R+ E+ +L G S C L+R N L I H
Sbjct: 204 GFEVEEQTALPIAEYAGRLKNEPVARLFDEIMKILFSG--HSRAC-LKRLNELGIPEGIH 260
Query: 302 AAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
LD A+ M+++ L N D+ + D+
Sbjct: 261 -PLLDALKTAEAADKRMIMLAL-KNTDERLRADK 292
>gi|334144335|ref|YP_004537491.1| poly(A) polymerase [Thioalkalimicrobium cyclicum ALM1]
gi|333965246|gb|AEG32012.1| poly(A) polymerase [Thioalkalimicrobium cyclicum ALM1]
Length = 469
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 160/322 (49%), Gaps = 24/322 (7%)
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
K+ GI +I + + + LK G++AYLVGG VRDL+L PKDFD+ T A+
Sbjct: 35 KSYSGYQQGIHHRLIDKAALDTVFSLKRAGYEAYLVGGAVRDLMLGIEPKDFDIATNASP 94
Query: 114 KQIRRQF-HRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV-----LLSQIPY 167
Q+++ F HR ++IGRRF + + +IEV++F ++G V LL Y
Sbjct: 95 DQVKQVFRHRCQLIGRRFRLAHIRYGRLIIEVATFRGDQENGHPARQVDDSGRLLRDNVY 154
Query: 168 GCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
G + D+ WR RDFTIN+L++DP + + DY G DL ++ + ++ + ED
Sbjct: 155 GSMDEDV--WR----RDFTINALYYDPKRDVVIDYVAGREDLYAGQIVLIGDPWVRYRED 208
Query: 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
R++R +R AA+LG + + L ++ + +R+ E+ + G+A
Sbjct: 209 PVRMIRAVRFAAKLGFKLAPSAEKPIGELGVLLKEVSNARMFDEVLKLFHSGSAILVFEK 268
Query: 288 LRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPAD------YTL 341
LR Y+L K L P A L + + + +++ + D+ ++ D+P + L
Sbjct: 269 LRHYDLFKHLFPLTDAILASEKEQFPRQ---LVIEALQSTDRRIAEDKPVNPAFLFAAML 325
Query: 342 WVGLLSFHQALVSD---PQDAF 360
W ++ + + PQDAF
Sbjct: 326 WEPMMQARHDYLREGLSPQDAF 347
>gi|345875062|ref|ZP_08826858.1| polyA polymerase [Neisseria weaveri LMG 5135]
gi|343969489|gb|EGV37701.1| polyA polymerase [Neisseria weaveri LMG 5135]
Length = 448
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 132/249 (53%), Gaps = 6/249 (2%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI MI + V++ L+++GF+AY+VGG VRDLLL PKDFDV T A +++R+ F
Sbjct: 30 GIRADMISFAAEKVIQRLQNEGFEAYVVGGAVRDLLLGMEPKDFDVATNAKPEEVRKLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
RS IIGRRF I V + IEV++F K + + ++ +G D +R
Sbjct: 90 RSRIIGRRFQIVHVMVGPETIEVTTFRGNGKVVQNEHGRIMKDNHFGTIAEDAMR----- 144
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT N+L++DP +I D+ +G++D++ KL + + ED RILR +R++ +L
Sbjct: 145 -RDFTCNALYYDPTREQIIDFHHGVADIQAGKLVMIGDPAARYQEDPVRILRAVRLSGKL 203
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
G + + + +++ +R+ E+ +L G A + L+ + + P
Sbjct: 204 GFEVEEKTAAPITHYAQRLKQEPVARLFDEIMKLLFSGYARKCLKQLKHLGISDNIHPLL 263
Query: 302 AAYLDQQAG 310
A L AG
Sbjct: 264 DALLSADAG 272
>gi|294670147|ref|ZP_06735072.1| poly(A) polymerase [Neisseria elongata subsp. glycolytica ATCC
29315]
gi|291308074|gb|EFE49317.1| poly(A) polymerase [Neisseria elongata subsp. glycolytica ATCC
29315]
Length = 455
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 136/263 (51%), Gaps = 14/263 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+ L+ G++AY+VGG VRDLL+ PKDFDV T A +++R F RS IIGRRF I
Sbjct: 41 VVSRLQQAGYEAYVVGGAVRDLLIGAEPKDFDVATNATPEEVRAVFRRSRIIGRRFRIVH 100
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V + IEV++F K + ++ ++ YG D R RDFT N+L+FDP
Sbjct: 101 VMVGPETIEVTTFRGGGKAVQNEQGRIMKDNTYGTLAEDAGR------RDFTCNALYFDP 154
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NG+ D++ +L + + ED RILR +R+A +LG + + +
Sbjct: 155 VKGEIIDFHNGVEDVKARRLVMIGDPAERYQEDPVRILRAVRLAGKLGFTVEERTAAPIA 214
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLD--QQAGKI 312
+ ++ +R+ E+ +L G A C L +++ L I P H LD QQA +
Sbjct: 215 KYAGRLKEEPPARLFDEIMKLLFSGYARR--C-LDQFHTLGIDTPIH-PLLDALQQASR- 269
Query: 313 TAENPMMLMRLFFNLDKLVSCDR 335
P M+ N D+ + D+
Sbjct: 270 -GGRPNMVTASLKNTDERLRADK 291
>gi|187477229|ref|YP_785253.1| poly(A) polymerase [Bordetella avium 197N]
gi|115421815|emb|CAJ48328.1| poly(A) polymerase [Bordetella avium 197N]
Length = 452
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 126/235 (53%), Gaps = 18/235 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V ++L+ G++AY+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCEVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-------KHGEGKETVLLSQIPYGCDEIDL 174
R+ IIGRRF + V +IE S+F A +HG +L +G E D
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPASAEQETDEHGR-----ILRDNVFGSHEEDA 144
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++DP ++ DY NG+ DL+ ++R + + ED R+LR
Sbjct: 145 AR------RDFTMNALYYDPHTEEVIDYHNGVQDLKKRQIRMIGDPVTRYREDPVRMLRA 198
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
+R AA+L + + +++ IE + SR+ E+ +L+ G A + LR
Sbjct: 199 VRFAAKLNGTIDPATRQPIATMAELIENVPASRLFDEMLKLLTCGHAMDCLRQLR 253
>gi|417958237|ref|ZP_12601153.1| polyA polymerase [Neisseria weaveri ATCC 51223]
gi|343967299|gb|EGV35548.1| polyA polymerase [Neisseria weaveri ATCC 51223]
Length = 448
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 132/249 (53%), Gaps = 6/249 (2%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI MI + V++ L+++GF+AY+VGG VRDLLL PKDFDV T A +++R+ F
Sbjct: 30 GIRADMISFAAEKVIQRLQNEGFEAYVVGGAVRDLLLGMEPKDFDVATNAKPEEVRKLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
RS IIGRRF I V + IEV++F K + + ++ +G D +R
Sbjct: 90 RSRIIGRRFQIVHVMVGPETIEVTTFRGNGKVVQNEHGRIMKDNHFGTIAEDAMR----- 144
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT N+L++DP +I D+ +G++D++ KL + + ED RILR +R++ +L
Sbjct: 145 -RDFTCNALYYDPTREQIIDFHHGVADIQAGKLVMIGDPAARYQEDPVRILRAVRLSGKL 203
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
G + + + +++ +R+ E+ +L G A + L+ + + P
Sbjct: 204 GFEVEEKTAAPITHYAQRLKQEPVARLFDEIMKLLFSGYARKCLKQLKHLGISDNIHPLL 263
Query: 302 AAYLDQQAG 310
A L AG
Sbjct: 264 DALLSADAG 272
>gi|385853473|ref|YP_005899987.1| poly(A) polymerase [Neisseria meningitidis H44/76]
gi|416197337|ref|ZP_11618547.1| poly(A) polymerase [Neisseria meningitidis CU385]
gi|325140009|gb|EGC62538.1| poly(A) polymerase [Neisseria meningitidis CU385]
gi|325200477|gb|ADY95932.1| poly(A) polymerase [Neisseria meningitidis H44/76]
Length = 445
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 132/244 (54%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 36 VIRRLKGTGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 95
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 96 VMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 149
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 150 EKEEILDFHNGIADVAAHRLVMIGDAAERYQEDPVRILRAIRLSGKLGFELSEETAA--- 206
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLL-KILLPFHAAYL-DQQA 309
++ SI RL +R+ E+ +L G A + L +++ I L +A + D A
Sbjct: 207 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHLLLNALRVSDGIA 266
Query: 310 GKIT 313
GK+T
Sbjct: 267 GKMT 270
>gi|149190136|ref|ZP_01868412.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio shilonii
AK1]
gi|148836025|gb|EDL52986.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio shilonii
AK1]
Length = 449
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 129/252 (51%), Gaps = 12/252 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G+ AYLVGG VRDLLL PKDFD+ T A +QI++ F
Sbjct: 29 ISRKQISENALKVLYRLNGAGYDAYLVGGGVRDLLLGEQPKDFDIATNATPEQIKKLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE------GKETVLLSQIPYGCDEIDLVR 176
+IGRRF + + +IEV++F + E KE +LL YG + D R
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFRGHHQEQEKNVSQQSKEGMLLRDNVYGSIDEDAER 148
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDF+IN+++++ I+DYA G+ DL +R + + + ED R+LR +R
Sbjct: 149 ------RDFSINAMYYNIGDYSIHDYAGGMEDLEDRLIRLIGEPEVRYREDPVRMLRAIR 202
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
AA+L +D + L+ + + +R+ E +L G + LLR YNL +
Sbjct: 203 FAAKLDFDIEEDTAAPIEELAPLLRDIPSARLYEESLKLLQSGYGLETYHLLREYNLFQQ 262
Query: 297 LLPFHAAYLDQQ 308
L P A + ++
Sbjct: 263 LFPIIAPHFTEE 274
>gi|119899430|ref|YP_934643.1| poly(A) polymerase [Azoarcus sp. BH72]
gi|119671843|emb|CAL95757.1| probable poly(A) polymerase [Azoarcus sp. BH72]
Length = 452
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 149/298 (50%), Gaps = 19/298 (6%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + V +L+ G++A++VGG VRDLL+ PKD+DV T+A +++R F
Sbjct: 30 GIRREQLSPAARKVCSVLQEHGYKAFVVGGAVRDLLIGHPPKDYDVATSATPEEVRALFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----VLLSQIPYGCDEIDLVR 176
R+ IIGRRF I V IEVS+F + + E ET VL + YG D R
Sbjct: 90 RARIIGRRFKIVHVMSGPETIEVSTFRAL-QDAESAETDEHGRVLRDNV-YGSQAEDATR 147
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFT+N+L++DP I DY +G++D++ LR + + ED R+LR +R
Sbjct: 148 ------RDFTVNALYYDPGTETIVDYHHGVADVQQKTLRMIGDPRTRYREDPVRMLRAVR 201
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
+ A+LGLS + ++S +E + +R+ E+ +L G A + LR L
Sbjct: 202 LGAKLGLSIDPAARGPIREMASLLENVPAARLFDEMLKLLLSGYAVKCLRQLREEGLHHG 261
Query: 297 LLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVS 354
LLP L+Q G+ + N D+ V D+P L +H+ L +
Sbjct: 262 LLPLLDVILEQPMGE------RFVWLSLENTDERVRQDKPVSPGFLFATLLWHEVLAN 313
>gi|416213874|ref|ZP_11622567.1| poly(A) polymerase [Neisseria meningitidis M01-240013]
gi|325144127|gb|EGC66434.1| poly(A) polymerase [Neisseria meningitidis M01-240013]
Length = 453
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 128/244 (52%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NG+ D+ KL + A + ED RILR +R++ +LG +
Sbjct: 158 EKEEILDFHNGMDDIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSQ---ATAG 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|297180382|gb|ADI16599.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured gamma
proteobacterium HF0010_01E20]
Length = 447
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 8/228 (3%)
Query: 74 VVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPIC 133
V+++L + GFQAYLVGGCVRD L PKDFDV T A L+ +R+ F RS I+G+RFPI
Sbjct: 60 TVIEVLNANGFQAYLVGGCVRDALCGVKPKDFDVATNATLETVRQLFRRSRIVGKRFPIV 119
Query: 134 RVHIKGSVIEVSSF-ETVA-KHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLF 191
V +IEVS+F ++++ K + ++L +G D R RDFT N+L+
Sbjct: 120 HVRFGRDLIEVSTFRQSISDKIVHDDKGMILRDNAFGTLHEDAFR------RDFTANALY 173
Query: 192 FDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDT 251
+DP ++I D+ +G++D++ LR + ED R+LR +R +A+LG S + I
Sbjct: 174 YDPNSDEIIDFVDGVADIKRKLLRFIGDPKTRLAEDPVRMLRAIRFSAKLGFSIDQQILN 233
Query: 252 AMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ ++S++ + +R+ E + G AE +R + L P
Sbjct: 234 YTNETANSLKTVSPARLFDEFLKLFLSGYAEQVWRQVRETPIAGALFP 281
>gi|421554594|ref|ZP_16000535.1| poly(A) polymerase [Neisseria meningitidis 98008]
gi|402332554|gb|EJU67879.1| poly(A) polymerase [Neisseria meningitidis 98008]
Length = 453
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 130/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK FQAY+VGG +RDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGARFQAYVVGGAIRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|433473242|ref|ZP_20430606.1| poly(A) polymerase family protein [Neisseria meningitidis 97021]
gi|433481792|ref|ZP_20439057.1| poly(A) polymerase family protein [Neisseria meningitidis 2006087]
gi|433483777|ref|ZP_20441005.1| poly(A) polymerase family protein [Neisseria meningitidis 2002038]
gi|433485977|ref|ZP_20443178.1| poly(A) polymerase family protein [Neisseria meningitidis 97014]
gi|432210843|gb|ELK66799.1| poly(A) polymerase family protein [Neisseria meningitidis 97021]
gi|432217623|gb|ELK73491.1| poly(A) polymerase family protein [Neisseria meningitidis 2006087]
gi|432221480|gb|ELK77290.1| poly(A) polymerase family protein [Neisseria meningitidis 2002038]
gi|432223023|gb|ELK78805.1| poly(A) polymerase family protein [Neisseria meningitidis 97014]
Length = 453
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 130/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK FQAY+VGG +RDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGARFQAYVVGGAIRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|296315340|ref|ZP_06865281.1| poly(A) polymerase [Neisseria polysaccharea ATCC 43768]
gi|296837718|gb|EFH21656.1| poly(A) polymerase [Neisseria polysaccharea ATCC 43768]
Length = 474
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 130/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK GFQAY+VGG +RDLLL PKDFDV T A +Q+ + F RS I+GRRF I
Sbjct: 44 VIRRLKGAGFQAYVVGGAIRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIVGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGVETIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYREDPVRILRAIRLSGKLGFELSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDMPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|388456398|ref|ZP_10138693.1| poly(A) polymerase [Fluoribacter dumoffii Tex-KL]
Length = 452
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 125/241 (51%), Gaps = 10/241 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I++A I + VL L GFQAY+VGG VRDLLL + PKDFDV T A Q++ F
Sbjct: 37 ISKADISSNALKVLNRLIGAGFQAYIVGGSVRDLLLHKAPKDFDVATDATPNQVKSLFRN 96
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----VLLSQIPYGCDEIDLVRWR 178
IIGRRF + + +IEV++F A E ++T +L+ YG +D WR
Sbjct: 97 GRIIGRRFKLVHILFHREIIEVATFRGHAAVDESQQTNERGMLVRDNAYGS--LDEDAWR 154
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFTINSL+++ + I D+ G+ D+ +R + + ED R+LR +R +
Sbjct: 155 ----RDFTINSLYYNINDSTIIDFTGGVKDVEQKLIRMIGDPVKRYQEDPVRMLRAIRFS 210
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + + +S I + SR+ E+ + G AE+ LL +Y L + L
Sbjct: 211 AKLNFKLAPETEAPFPEISHLITHVSNSRLFDEMTKLYQCGNAEAVQRLLMQYGLFQYLC 270
Query: 299 P 299
P
Sbjct: 271 P 271
>gi|261250263|ref|ZP_05942839.1| poly(A) polymerase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260939379|gb|EEX95365.1| poly(A) polymerase [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 453
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 128/254 (50%), Gaps = 16/254 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF AYLVGG VRDLLL + PKDFD+ T A +QIR+ F
Sbjct: 29 ISRKQISDNALKVLYRLNGAGFDAYLVGGGVRDLLLGQQPKDFDIATNATPEQIRQLFKN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEIDL 174
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEPNKNVSQQSKEGMLLRDNVYGTIDEDA 146
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+++++ I+DYA G DL +R L + ED R+LR
Sbjct: 147 ER------RDFTVNAMYYNIGDYSIHDYAGGHEDLEDKLIRLLGDPETRYREDPVRMLRA 200
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L +D + +++ ++ + +R+ E ML G + L+R YNL
Sbjct: 201 IRFAVKLDFDIEEDTAAPIEEMATLLQDIPAARLYEESLKMLQSGHGLETYHLMREYNLF 260
Query: 295 KILLPFHAAYLDQQ 308
+ L P A + ++
Sbjct: 261 QQLFPTIAEFFTEE 274
>gi|390948548|ref|YP_006412307.1| poly(A) polymerase [Thiocystis violascens DSM 198]
gi|390425117|gb|AFL72182.1| poly(A) polymerase [Thiocystis violascens DSM 198]
Length = 442
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 146/290 (50%), Gaps = 16/290 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++RA I + + VL L+ + FQA+LVGG VRDLLL PKDFD+ T A +Q+R+ F
Sbjct: 24 LSRANISENALKVLYRLRQENFQAHLVGGGVRDLLLGHEPKDFDIATDATPEQVRQVFRN 83
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEG-----KETVLLSQIPYGCDEIDLVRW 177
+IGRRF + VH +IEV++F + + +++ YG D +R
Sbjct: 84 CRLIGRRFRLAHVHFGRDIIEVATFRGCGDDADPLDRRLENGMIVRDNIYGSIAEDALR- 142
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTIN+L++D ++DYA+G++DL+ +LR + + ED AR+LR +R
Sbjct: 143 -----RDFTINALYYDIADFSLHDYADGLADLKAGRLRLIGDPEQRYREDPARMLRAVRF 197
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
A +LG + + ++ L S + + +R+ EL + G LR Y L L
Sbjct: 198 ACKLGFAIEPATERPLYELGSLLADIAAARLFDELIKLFHSGYGLDVFEKLRHYGLFGQL 257
Query: 298 LPFHAAYLDQQAGKITAENPMMLM-RLFFNLDKLVSCDRPADYTLWVGLL 346
P A L ++ + P+ + R N D+ + D+P +L
Sbjct: 258 FPDTEACLARE----DHDFPITFVSRGLSNTDQRIREDKPVTPAFLFAIL 303
>gi|417954941|ref|ZP_12597969.1| poly(A) polymerase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342814324|gb|EGU49270.1| poly(A) polymerase [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 455
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 128/254 (50%), Gaps = 16/254 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF AYLVGG VRDLLL + PKDFD+ T A +QIR+ F
Sbjct: 31 ISRKQISDNALKVLYRLNGAGFDAYLVGGGVRDLLLGQQPKDFDIATNATPEQIRQLFKN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEIDL 174
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEPNKNVSQQSKEGMLLRDNVYGTIDEDA 148
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+++++ I+DYA G DL +R L + ED R+LR
Sbjct: 149 ER------RDFTVNAMYYNIGDYSIHDYAGGHEDLEDKLIRLLGDPETRYREDPVRMLRA 202
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L +D + +++ ++ + +R+ E ML G + L+R YNL
Sbjct: 203 IRFAVKLDFDIEEDTAAPIEEMATLLQDIPAARLYEESLKMLQSGHGLETYHLMREYNLF 262
Query: 295 KILLPFHAAYLDQQ 308
+ L P A + ++
Sbjct: 263 QQLFPTIAEFFTEE 276
>gi|261379064|ref|ZP_05983637.1| poly(A) polymerase [Neisseria cinerea ATCC 14685]
gi|269144521|gb|EEZ70939.1| poly(A) polymerase [Neisseria cinerea ATCC 14685]
Length = 453
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 122/228 (53%), Gaps = 12/228 (5%)
Query: 79 LKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIK 138
LK GFQAY+VGG VRDLLL PKDFDV T A +Q+ + F RS IIGRRF I V
Sbjct: 48 LKEAGFQAYVVGGAVRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNG 107
Query: 139 GSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNK 198
VIEV++F AK + ++ YG E D +R RDFT N+L++DP +
Sbjct: 108 AEVIEVTTFRGGAKVHQNARGRIMKDNTYGSIEEDAMR------RDFTCNALYYDPEKEE 161
Query: 199 IYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSS 258
I D+ NG++D+ KL + A + ED RILR +R++ +LG + ++
Sbjct: 162 ILDFHNGMADIAERKLVMIGNAAERYQEDPVRILRAIRLSGKLGFELSQ---ATAGPIAE 218
Query: 259 SIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
SI RL +R+ E+ +L G A + L+ +++ + P A
Sbjct: 219 SIGRLKHEPVARLFDEIMKLLFSGHARECLKRLKEFDVPDDIHPLFNA 266
>gi|317493240|ref|ZP_07951662.1| poly(A) polymerase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918633|gb|EFV39970.1| poly(A) polymerase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 507
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 144/275 (52%), Gaps = 16/275 (5%)
Query: 35 MCREMCS-DSFNQEVDVSNWKTVDSRNL-GITRAMIPQPSWVVLKILKSQGFQAYLVGGC 92
CR++ S ++ + + + S TV R+ I+R I + + VL L G++AYLVGG
Sbjct: 51 FCRKVLSREAESAQAEESRSMTVIPRDQHNISRQQISENALKVLYRLNKSGYEAYLVGGG 110
Query: 93 VRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAK 152
VRDLLL + PKDFD+ T+A +Q+R+ F ++GRRF + V +IEV++F +
Sbjct: 111 VRDLLLGKQPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHE 170
Query: 153 H-GEGKET-------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYAN 204
H G+GK +LL YG E D R RDFTINSL++ + DY
Sbjct: 171 HAGDGKNISQQAQNGMLLRDNVYGNIEEDAQR------RDFTINSLYYSISDFTVRDYTG 224
Query: 205 GISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLD 264
G+ DL+ ++R + + ED R+LR +R AA+L ++ C + L++ + +
Sbjct: 225 GLRDLQEGRIRLIGDPETRYREDPVRMLRAVRFAAKLDMTICPQTAEPIPRLAALLHEIP 284
Query: 265 KSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+R+ E +L G ++ LL Y L + L P
Sbjct: 285 SARLFEESLKLLQSGYGFATYKLLCEYQLFQPLFP 319
>gi|401762334|ref|YP_006577341.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|400173868|gb|AFP68717.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ENHKU01]
Length = 447
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 140/282 (49%), Gaps = 21/282 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 21 ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG--------EGKETVLLSQIPYGCDEIDL 174
++GRRF + V +IEV++F + G G+ +LL +G E D
Sbjct: 81 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGASDRTTSQRGQNGMLLRDNIFGSIEEDA 140
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++ + DY G+ DL+ +R + + ED R+LR
Sbjct: 141 QR------RDFTINSLYYSVADFTVRDYVGGMQDLKEGLIRLIGTPETRYREDPVRMLRA 194
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L + + + L++ I + +R+ E +L G + LLR YNL
Sbjct: 195 VRFAAKLNMRISPETAEPIPRLATLINDVPPARLFEEALKLLQAGYGFETYKLLREYNLF 254
Query: 295 KILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
+ L P Y + ++PM M+ ++ N D + D
Sbjct: 255 QPLFPTITRYFTE-----NGDSPMERMIAQVLKNTDTRIQND 291
>gi|296101313|ref|YP_003611459.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295055772|gb|ADF60510.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 447
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 141/282 (50%), Gaps = 21/282 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 21 ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG--------EGKETVLLSQIPYGCDEIDL 174
++GRRF + V +IEV++F + G G+ +LL +G E D
Sbjct: 81 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGASDRTTSQRGQNGMLLRDNIFGSIEEDA 140
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++ + DY G+ DL+ +R + + ED R+LR
Sbjct: 141 QR------RDFTINSLYYSVADFTVRDYVGGMQDLKEGLIRLIGTPETRYREDPVRMLRA 194
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L + + + L++ I + +R+ E +L G ++ LLR YNL
Sbjct: 195 VRFAAKLDMRISPETAEPIPRLATLINDVPPARLFEEALKLLQAGHGFATYNLLREYNLF 254
Query: 295 KILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
+ L P Y + ++PM M+ ++ N D + D
Sbjct: 255 QPLFPSITRYFTE-----NGDSPMERMIAQVLKNTDTRIRND 291
>gi|148262375|ref|YP_001229081.1| poly(A) polymerase [Geobacter uraniireducens Rf4]
gi|146395875|gb|ABQ24508.1| poly(A) polymerase [Geobacter uraniireducens Rf4]
Length = 454
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 135/279 (48%), Gaps = 32/279 (11%)
Query: 60 NLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQ 119
N I+R + + VL LK GF AYLVGG VRDLLL R PKDFD++T A QI+R
Sbjct: 13 NHPISRRWLSPNAVKVLYRLKDNGFTAYLVGGGVRDLLLGREPKDFDIVTDATPGQIKRM 72
Query: 120 FHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKH-----------GEGKETVLLSQIP-- 166
F +IGRRF + +H +IEV++F + ++ GE E + P
Sbjct: 73 FRNCRLIGRRFRLAHLHFHDEIIEVATFRSASQDEPCAEEQGPAPGEITEPGARMRPPRL 132
Query: 167 -------------YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLK 213
+G E D +R RDFT+N+L ++ I DY G+ DL
Sbjct: 133 LKSEDGMVLRDNIFGTPEEDAIR------RDFTVNALCYNIDDFSIIDYVGGMEDLNRGV 186
Query: 214 LRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELN 273
+RT+ + FTED R++R +R AA LG K + LS++I + R+ E+
Sbjct: 187 VRTIGDPLVRFTEDPVRMIRAVRFAAMLGFEVEKATWQTILDLSATITKAAPPRLYEEVL 246
Query: 274 YMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKI 312
+ GA E + LLR+ L L P +L +++ +
Sbjct: 247 KLFLMGAGEKTYQLLRQSGLFAALFPHFNDWLARESDGV 285
>gi|340789021|ref|YP_004754486.1| poly(A) polymerase [Collimonas fungivorans Ter331]
gi|340554288|gb|AEK63663.1| Poly(A) polymerase [Collimonas fungivorans Ter331]
Length = 463
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 144/293 (49%), Gaps = 14/293 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + V K L+ GF+A++VGG VRDLLL PKDFDV T A +Q++R F
Sbjct: 29 GINPQLVSPNAVRVTKTLQDNGFKAFIVGGAVRDLLLGVKPKDFDVATNATPEQVKRLFR 88
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE--TVLLSQIPYGCDEIDLVRWRN 179
R+ IIG+RF I V +IEV++F + G K+ +L +G D VR
Sbjct: 89 RAFIIGKRFQIVHVMFGQELIEVTTFRGASSDGSPKDEHGRVLRDNTFGEQHEDAVR--- 145
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFTIN++++DP + DY GI D+R LR + F ED R+LR +R AA
Sbjct: 146 ---RDFTINAMYYDPATESVLDYHGGIDDIRAKTLRIIGEPEARFREDPIRMLRIVRFAA 202
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+L + + +++ I+ + +R+ E+ +L G A + + LR+ L LLP
Sbjct: 203 KLKFTIDPATRAPIPVMAALIDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLP 262
Query: 300 FHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
L+Q G+ + N D V +P L +HQ L
Sbjct: 263 LLDVVLEQPLGE------KFVTLALANTDVRVQQGKPVSPGFLFASLLWHQVL 309
>gi|290476646|ref|YP_003469551.1| poly(A) polymerase I [Xenorhabdus bovienii SS-2004]
gi|289175984|emb|CBJ82787.1| poly(A) polymerase I [Xenorhabdus bovienii SS-2004]
Length = 503
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 128/247 (51%), Gaps = 15/247 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GFQAYLVGG VRDLLL + PKDFD+ T A +Q+R+ F
Sbjct: 76 ISRKDISDNALKVLYRLNKSGFQAYLVGGGVRDLLLHKKPKDFDIATNATPEQVRKLFRN 135
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
++GRRF + + VIEV++F + E + +LL +G E D
Sbjct: 136 CRLVGRRFRLAHIMFGPDVIEVATFRGSHEQVESNDRNQSQKAQSGMLLRDNIFGSVEED 195
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
VR RDFTINSL++ + DY G++DL+ +R + + ED R+LR
Sbjct: 196 AVR------RDFTINSLYYGIEDFALRDYVGGMADLQAGIIRLIGDPETRYREDPVRMLR 249
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A++L ++ K + L+ ++ + +R+ E +L G S+ LLR YNL
Sbjct: 250 AVRFASKLDMTIEKTTAEPIPQLAFLLKDIPSARLFEESLKLLQSGHGYSTYKLLREYNL 309
Query: 294 LKILLPF 300
++L P
Sbjct: 310 FQLLFPM 316
>gi|423118715|ref|ZP_17106399.1| Poly(A) polymerase [Klebsiella oxytoca 10-5246]
gi|376400781|gb|EHT13392.1| Poly(A) polymerase [Klebsiella oxytoca 10-5246]
Length = 453
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/338 (29%), Positives = 158/338 (46%), Gaps = 37/338 (10%)
Query: 48 VDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDV 107
V+ ++ + I+R I + VL L G++AYLVGG VRDLLL + PKDFDV
Sbjct: 13 VEQTHMTVIPREQHAISRKDISDNALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDV 72
Query: 108 ITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-------- 159
T+A Q+R+ F ++GRRF + V +IEV++F H EG T
Sbjct: 73 TTSATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTTDRVTSQRG 129
Query: 160 ---VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
+LL +G E D R RDFTINSL++ + DY G+ DL+ +R
Sbjct: 130 QNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLQEGMIRL 183
Query: 217 LIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ + ED R+LR +R AA+L ++ + + L++ + + +R+ E+ +L
Sbjct: 184 IGDPETRYREDPVRMLRAVRFAAKLNMNISAETAEPIPRLAALLHDVPPARLFEEVLKLL 243
Query: 277 SYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
G + LLR YNL + L P Y ++ ++PM ++ ++ N D + D
Sbjct: 244 QAGYGYDTYMLLREYNLFQPLFPTITRYFTER-----GDSPMEHIITQVLKNTDNRIHND 298
Query: 335 ---RPA---DYTLWVGLLSFHQALVSDP----QDAFVV 362
PA W LL Q + + DAF +
Sbjct: 299 MRVNPAFLFAVMFWYPLLEMAQKITQESGLAYNDAFAL 336
>gi|389871598|ref|YP_006379017.1| poly(A) polymerase [Advenella kashmirensis WT001]
gi|388536847|gb|AFK62035.1| poly(A) polymerase [Advenella kashmirensis WT001]
Length = 469
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 136/252 (53%), Gaps = 10/252 (3%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I R ++ + + V ++L+ +G+ A++VGG VRDL+L PKDFDV T+A ++IR F R
Sbjct: 33 IDRRLVSRNAIKVCEVLQQKGYDAFIVGGAVRDLVLGYEPKDFDVATSATPEEIRPLFRR 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA---KHGEGKETVLLSQIPYGCDEIDLVRWRN 179
+ IIGRRF + V +IE S+F + +H + +L + +G + D R
Sbjct: 93 ARIIGRRFQLVHVVFGQEIIETSTFRAPSQGDQHTDADGRILNDNV-FGTQQEDAAR--- 148
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFT+N+L++DP + DY NG++DL+ +R + F ED R+LR +R A+
Sbjct: 149 ---RDFTLNALYYDPVKETVIDYHNGVADLKNHLVRMIGDPEKRFREDPVRMLRAVRFAS 205
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+L + + L+ I+ + SR+ E +L+ G A ++ LR+ L + +LP
Sbjct: 206 KLNGTIEPATQAPIRQLAGLIKNVPDSRLFDETLKLLTCGNAIVALEQLRKEGLHENVLP 265
Query: 300 FHAAYLDQQAGK 311
L Q G+
Sbjct: 266 LIDQVLRQPGGE 277
>gi|299065813|emb|CBJ36991.1| poly(A) polymerase I [Ralstonia solanacearum CMR15]
Length = 515
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 139/304 (45%), Gaps = 38/304 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+ A++VGG VRDLLL PKDFDV T A +Q+ F RS IIGRRF I
Sbjct: 73 VTSTLQEAGYGAFIVGGAVRDLLLGIKPKDFDVATNATPEQVEALFRRSRIIGRRFQIVH 132
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------------------- 169
V G +IEVS+F + + V Q+P G
Sbjct: 133 VTFYGGREQEIIEVSTFRALV------DAVESEQVPAGKRVKRTELDHHTHAVDASGRVL 186
Query: 170 -DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
D + + ++ RDFT+N+++++P ++DY +G+ D+R LR + + + ED
Sbjct: 187 RDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHHGMEDMRARLLRMIGDPHTRYREDP 246
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G + L + I + +R+ E+ +L G A +S+ L
Sbjct: 247 VRMLRAVRFAAKTGFDIDPATRAPIAELGALIHNVPAARLFDEMLKLLMSGHAWASLQEL 306
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
R+ L + LLP L+Q G+ + N D+ V +P L +
Sbjct: 307 RKAGLHRGLLPLLDVALEQPMGQ------RFVQLALDNTDERVKAGKPVSPGFLFASLMW 360
Query: 349 HQAL 352
H L
Sbjct: 361 HHVL 364
>gi|289209207|ref|YP_003461273.1| poly(A) polymerase [Thioalkalivibrio sp. K90mix]
gi|288944838|gb|ADC72537.1| poly(A) polymerase [Thioalkalivibrio sp. K90mix]
Length = 461
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 141/283 (49%), Gaps = 23/283 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+RA I + VL L+ G++A LVGG VRDLLL R PKDFD+ T A Q+R F
Sbjct: 25 GISRAAIDDNALKVLYRLRDAGYRACLVGGGVRDLLLGREPKDFDIATDATPDQVRGLFR 84
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE----------GKETVLLSQIPYGCDE 171
+IGRRF + V VIEV++F A H E +E +L YG E
Sbjct: 85 NCRLIGRRFRLAHVLFGREVIEVATFR--APHDEDDDNDGQVALSEEGRILRDNRYGTIE 142
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLI-PAYLSFTEDCAR 230
D VR RDF++N+L++D + DY G+ DLR LR + ED R
Sbjct: 143 QDAVR------RDFSVNALYYDIDDFSVLDYTGGVEDLREGVLRLIGDDVETRLREDPVR 196
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R +A+LGL +++ + L+ ++ + +R+ E+ + GAA + + L R
Sbjct: 197 MLRAVRFSAKLGLRIAPEVEAGIRELAGLMQTVAPARLFDEVIKLFHSGAAVTCLDELER 256
Query: 291 YNLLKILLPFHA-AYLDQQAGKITAENPMMLMRLFFNLDKLVS 332
+ L + P A + D G AE L+ N DK ++
Sbjct: 257 FGLFAPMFPEAAECFADPDVG---AERRQFLVESLLNTDKRIN 296
>gi|365837109|ref|ZP_09378489.1| polynucleotide adenylyltransferase [Hafnia alvei ATCC 51873]
gi|364562687|gb|EHM40521.1| polynucleotide adenylyltransferase [Hafnia alvei ATCC 51873]
Length = 507
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 144/275 (52%), Gaps = 16/275 (5%)
Query: 35 MCREMCS-DSFNQEVDVSNWKTVDSRNL-GITRAMIPQPSWVVLKILKSQGFQAYLVGGC 92
CR++ S ++ + + + S TV R+ I+R I + + VL L G++AYLVGG
Sbjct: 51 FCRKVLSREAESAQAEESRSMTVLPRDQHNISRQQISENALKVLYRLNKSGYEAYLVGGG 110
Query: 93 VRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAK 152
VRDLLL + PKDFD+ T+A +Q+R+ F ++GRRF + V +IEV++F +
Sbjct: 111 VRDLLLGKQPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHE 170
Query: 153 H-GEGKET-------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYAN 204
H G+GK +LL YG E D R RDFTINSL++ + DY
Sbjct: 171 HAGDGKNISQQAQNGMLLRDNVYGNIEEDAQR------RDFTINSLYYSISDFTVRDYTG 224
Query: 205 GISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLD 264
G+ DL+ ++R + + ED R+LR +R AA+L ++ C + L++ + +
Sbjct: 225 GLRDLQEGRIRLIGDPETRYREDPVRMLRAVRFAAKLDMTICPQTAEPIPRLAALLHEIP 284
Query: 265 KSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+R+ E +L G ++ LL Y L + L P
Sbjct: 285 SARLFEESLKLLQSGYGFATYKLLCEYQLFQPLFP 319
>gi|114332256|ref|YP_748478.1| poly(A) polymerase [Nitrosomonas eutropha C91]
gi|114309270|gb|ABI60513.1| poly(A) polymerase [Nitrosomonas eutropha C91]
Length = 462
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 153/324 (47%), Gaps = 25/324 (7%)
Query: 43 SFNQEVDVSN---WKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLR 99
SF V V+ ++ + GI+R+ I S V L+ G+ AY+VGG VRDLLL
Sbjct: 11 SFGSTVSVTAAPAFRAIACERHGISRSSISAGSLKVALTLQQAGYSAYIVGGAVRDLLLG 70
Query: 100 RVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHG---EG 156
PKD+D++T A +++R F S IIGRRF + V KG +EVS+F A
Sbjct: 71 LKPKDYDIVTDATPEEVRAIFRHSRIIGRRFRLVHVMSKGETVEVSTFRGKAADDLIQSD 130
Query: 157 KETV-------LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDL 209
KE LL +G E D+ R RDFTIN+LF++P +I DY +G D+
Sbjct: 131 KECAYIDATGRLLHDNFFGSQEEDVRR------RDFTINALFYNPATEEIIDYLSGFEDV 184
Query: 210 RCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIM 269
+L + + ED R+LR +R+AA+LG+ + L+ + + +R+
Sbjct: 185 MAKRLNIIGDPEQRYREDPVRMLRAVRLAAKLGIQIDDRTAAPIGDLAPLLLNVPAARLF 244
Query: 270 MELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDK 329
E+ +L G A +++ LR L LLP L+Q G+ + N D+
Sbjct: 245 DEMLKLLFSGHALTAVIDLRTRGLHHGLLPMLDVILEQPLGE------RFISLALKNTDE 298
Query: 330 LVSCDRPADYTLWVGLLSFHQALV 353
V +P L +H+ L
Sbjct: 299 RVRQGKPVSPGFLFAALLWHEVLA 322
>gi|392977649|ref|YP_006476237.1| poly(A) polymerase I [Enterobacter cloacae subsp. dissolvens SDM]
gi|392323582|gb|AFM58535.1| poly(A) polymerase I [Enterobacter cloacae subsp. dissolvens SDM]
Length = 447
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 141/282 (50%), Gaps = 21/282 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 21 ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG--------EGKETVLLSQIPYGCDEIDL 174
++GRRF + V +IEV++F + G G+ +LL +G E D
Sbjct: 81 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGASDRTTSQRGQNGMLLRDNIFGSIEEDA 140
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++ + DY G+ DL+ +R + + ED R+LR
Sbjct: 141 QR------RDFTINSLYYSVADFTVRDYVGGMQDLKEGLIRLIGTPETRYREDPVRMLRA 194
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L + + + L++ I + +R+ E +L G + LLR YNL
Sbjct: 195 VRFAAKLDMRISPETAEPIPRLATLINDVPPARLFEEALKLLQAGHGFETYNLLREYNLF 254
Query: 295 KILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
+ L P Y ++ ++PM M+ ++ N D + D
Sbjct: 255 QPLFPTITRYFTEK-----GDSPMERMIAQVLKNTDTRIRND 291
>gi|375106401|ref|ZP_09752662.1| poly(A) polymerase [Burkholderiales bacterium JOSHI_001]
gi|374667132|gb|EHR71917.1| poly(A) polymerase [Burkholderiales bacterium JOSHI_001]
Length = 540
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 147/295 (49%), Gaps = 22/295 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+ LK GF+AY+VGG VRDLL+ PKDFDV T A +Q++ F R+ IIGRRF I
Sbjct: 49 VVATLKEGGFEAYIVGGAVRDLLVGHRPKDFDVATNATPEQVKGLFRRAFIIGRRFRIVH 108
Query: 135 V-HIKG---SVIEVSSF---------ETVAKHGE-------GKETVLLSQIPYGCDEIDL 174
V H +G VIEVS+F +TVA + + GK V+ + D +
Sbjct: 109 VIHGRGRDHEVIEVSTFRAFLDAEQADTVAGNEKTSRADLVGKSHVVDASGRVLRDNVWG 168
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
+ ++ RDFT+N++++DP + DY GI D + LR + + ED RI+R
Sbjct: 169 PQIEDAARRDFTVNAMYYDPQTQVVVDYHGGIKDAKKRVLRMIGDPATRYREDPVRIIRA 228
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+LG + + + + SR+ E+ +L G A SS+ LR+Y L
Sbjct: 229 VRFAAKLGFELEPKSAAPIAEATKLLANVPVSRMFDEMIKLLQTGHALSSVQALRKYGLH 288
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFH 349
+ + P A D++ + + E + + + D+ V R + + L +H
Sbjct: 289 RGVFPILDAIYDEE--RSSVERQAFINQALADTDRRVEEGRAVAPSFMLACLLWH 341
>gi|33591480|ref|NP_879124.1| poly(A) polymerase [Bordetella pertussis Tohama I]
gi|384202817|ref|YP_005588556.1| poly(A) polymerase [Bordetella pertussis CS]
gi|408414596|ref|YP_006625303.1| poly(A) polymerase [Bordetella pertussis 18323]
gi|33571122|emb|CAE40619.1| poly(A) polymerase [Bordetella pertussis Tohama I]
gi|332380931|gb|AEE65778.1| poly(A) polymerase [Bordetella pertussis CS]
gi|401776766|emb|CCJ61998.1| poly(A) polymerase [Bordetella pertussis 18323]
Length = 451
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V +L+ G++AY+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-------KHGEGKETVLLSQIPYGCDEIDL 174
R+ IIGRRF + V +IE S+F A +HG +L +G E D
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGR-----ILRDNVFGSQEEDA 144
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++DP ++ DY G+ DL+ ++R + + ED R+LR
Sbjct: 145 AR------RDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRA 198
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
+R AA+L S + +++S IE + SR+ E+ +L+ G A + LR
Sbjct: 199 VRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLR 253
>gi|422670237|ref|ZP_16730040.1| poly(A) polymerase, partial [Pseudomonas syringae pv. aceris str.
M302273]
gi|330974599|gb|EGH74665.1| poly(A) polymerase, partial [Pseudomonas syringae pv. aceris str.
M302273]
Length = 412
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 20/234 (8%)
Query: 85 QAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEV 144
QAYLVGGCVRD++L PKDFDV T+A +Q+R +F + IIGRRF + +H +IEV
Sbjct: 1 QAYLVGGCVRDMMLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEV 60
Query: 145 SSFETVAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
++F A H + E +L YG E D R RDFTIN+L++
Sbjct: 61 ATFR--ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------RDFTINALYY 112
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
DP ++ DYANG+ D+R +R + + ED R+LR +R AA+L K
Sbjct: 113 DPVSERVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQP 172
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLD 306
+ +L+ + + +R+ E+ + G A + +L L + L P + L+
Sbjct: 173 IRALAPMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALE 226
>gi|197116551|ref|YP_002136978.1| nucleic acid-independent polyadenylating polymerase [Geobacter
bemidjiensis Bem]
gi|197085911|gb|ACH37182.1| nucleic acid-independent polyadenylating polymerase [Geobacter
bemidjiensis Bem]
Length = 481
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 150/317 (47%), Gaps = 59/317 (18%)
Query: 79 LKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIK 138
LK QGF AYLVGG VRDLLL R PKDFDV+T A Q+++ F +IGRRF + +H
Sbjct: 33 LKEQGFTAYLVGGGVRDLLLGREPKDFDVVTDATPAQLKKMFRNCRLIGRRFRLAHLHFH 92
Query: 139 GSVIEVSSFETV------------------AKHGEGKETVLLSQI--------------- 165
+IEV++F + A +ETV+ +++
Sbjct: 93 DEIIEVATFRSTVDPSAEAPAEETAEAPSEAAQELPQETVVEAKLLEEEREGRRRRGHHG 152
Query: 166 P---------------YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLR 210
P +G E D VR RDFT+N+LF++ I D+ G+ DL+
Sbjct: 153 PSMLKSEDGMVLRDNVFGTPEEDAVR------RDFTVNALFYNIADFSIIDHVGGMEDLK 206
Query: 211 CLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMM 270
+RT+ + FTED R++R +R A+ LG + + + A+ L +I + R+
Sbjct: 207 QGLIRTIGDPLVRFTEDPVRMIRAIRFASMLGFNIEERTEAAIEELCGTINKATPPRLYE 266
Query: 271 ELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA-GKITAENPMMLMRLFFNLDK 329
E+ +L GA E + ++R L L P A+L++++ G A + + +D+
Sbjct: 267 EVLKLLLLGAGERTYQMMRHSGLFAPLFPHFDAWLERESEGYPHAR----VSKGLEWVDE 322
Query: 330 LVSCDRPADYTLWVGLL 346
L+ D P L + L+
Sbjct: 323 LIGQDEPVSPPLLIALV 339
>gi|33598144|ref|NP_885787.1| poly(A) polymerase [Bordetella parapertussis 12822]
gi|33566702|emb|CAE38912.1| poly(A) polymerase [Bordetella parapertussis]
Length = 451
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V +L+ G++AY+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-------KHGEGKETVLLSQIPYGCDEIDL 174
R+ IIGRRF + V +IE S+F A +HG +L +G E D
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGR-----ILRDNVFGSQEEDA 144
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++DP ++ DY G+ DL+ ++R + + ED R+LR
Sbjct: 145 AR------RDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRA 198
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
+R AA+L S + +++S IE + SR+ E+ +L+ G A + LR
Sbjct: 199 VRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLR 253
>gi|163855127|ref|YP_001629425.1| poly(A) polymerase [Bordetella petrii DSM 12804]
gi|163258855|emb|CAP41154.1| poly(A) polymerase [Bordetella petrii]
Length = 451
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 124/230 (53%), Gaps = 8/230 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V ++L+ G+ AY+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCEVLRQHGYSAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--GKETVLLSQIPYGCDEIDLVRWRN 179
R+ IIGRRF + V +IE S+F A + + +L +G E D R
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPASQDQETDEHGRILRDNVFGTHEEDAAR--- 146
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFT+N+L++DP ++ DY NG+ DL+ ++R + + ED R+LR +R AA
Sbjct: 147 ---RDFTMNALYYDPHTEEVIDYHNGVQDLKKRQVRIIGDPAQRYREDPVRMLRAVRFAA 203
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
+L S + +++ IE + SR+ E+ +L+ G A + LR
Sbjct: 204 KLNGSIDPATRKPIGTMAPLIENVPASRLFDEMLKLLTCGHAMDCLRQLR 253
>gi|311280885|ref|YP_003943116.1| poly(A) polymerase [Enterobacter cloacae SCF1]
gi|308750080|gb|ADO49832.1| poly(A) polymerase [Enterobacter cloacae SCF1]
Length = 473
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 142/289 (49%), Gaps = 23/289 (7%)
Query: 35 MCREMCSDSFN--QEVDVSNWKTVDSR-NLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S N + VD TV R I+R I + + VL L G++AYLVGG
Sbjct: 16 FCRKVLSREENGAETVDAKPEMTVIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGG 75
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T+A +Q+R+ F ++GRRF + V +IEV++F
Sbjct: 76 GVRDLLLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 132
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG + +LL +G E D R RDFTINSL++ +
Sbjct: 133 GHHEGSASDRVTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 186
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+LG+S + + L++ I
Sbjct: 187 DYVGGMRDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMSISAETAEPIPRLATLI 246
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G + LLR Y+L + L P Y +
Sbjct: 247 NDVPPARLFEESLKLLQAGYGYETYRLLREYSLFQPLFPTITRYFTENG 295
>gi|33603037|ref|NP_890597.1| poly(A) polymerase [Bordetella bronchiseptica RB50]
gi|410421528|ref|YP_006901977.1| poly(A) polymerase [Bordetella bronchiseptica MO149]
gi|427816052|ref|ZP_18983116.1| poly(A) polymerase [Bordetella bronchiseptica 1289]
gi|427825430|ref|ZP_18992492.1| poly(A) polymerase [Bordetella bronchiseptica Bbr77]
gi|33568668|emb|CAE34426.1| poly(A) polymerase [Bordetella bronchiseptica RB50]
gi|408448823|emb|CCJ60508.1| poly(A) polymerase [Bordetella bronchiseptica MO149]
gi|410567052|emb|CCN24622.1| poly(A) polymerase [Bordetella bronchiseptica 1289]
gi|410590695|emb|CCN05788.1| poly(A) polymerase [Bordetella bronchiseptica Bbr77]
Length = 451
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V +L+ G++AY+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-------KHGEGKETVLLSQIPYGCDEIDL 174
R+ IIGRRF + V +IE S+F A +HG +L +G E D
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGR-----ILRDNVFGSQEEDA 144
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++DP ++ DY G+ DL+ ++R + + ED R+LR
Sbjct: 145 AR------RDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRA 198
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
+R AA+L S + +++S IE + SR+ E+ +L+ G A + LR
Sbjct: 199 VRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLR 253
>gi|405373393|ref|ZP_11028166.1| Poly(A) polymerase [Chondromyces apiculatus DSM 436]
gi|397087652|gb|EJJ18682.1| Poly(A) polymerase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 574
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 150/304 (49%), Gaps = 25/304 (8%)
Query: 69 PQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGR 128
P VVL+ L G QAY+VGGCVRDLLL R PKDFD+ T+A ++R F +IGR
Sbjct: 141 PDALKVVLR-LHQHGHQAYMVGGCVRDLLLGRKPKDFDIATSATPNEVRGIFRNCRLIGR 199
Query: 129 RFPICRVHIKGS-VIEVSSF-------ETVA------KHGEGKETVLLSQIPYGCDEIDL 174
RF + V+ KG +IEVS+F E A + G+G++ ++ +G + D
Sbjct: 200 RFRLAHVYFKGGKIIEVSTFRANPTELEAAANANSGEEDGDGEDLLITHDNVFGTAQEDA 259
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTIN LF+D ++ DY G DL +RT+ + ED RILR
Sbjct: 260 RR------RDFTINGLFYDVAEGRVIDYVRGRRDLDERFIRTIGDPEVRMREDPVRILRA 313
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L L AM + R +R++ E ++ G + ++ LL + L
Sbjct: 314 VRFAAKLELDIESRTYAAMEGAVEDLPRCAPARLLEETFRLIRGGVSAPALKLLDALDAL 373
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVS 354
KILLP AYL Q GK E +LD+ VS D + + +L + +
Sbjct: 374 KILLPPVNAYLKQH-GK---EGEKTFYAFAESLDRRVSSGEALDDAILLAMLLIPISRTT 429
Query: 355 DPQD 358
P++
Sbjct: 430 GPEE 433
>gi|254784780|ref|YP_003072208.1| poly(A) polymerase [Teredinibacter turnerae T7901]
gi|237686559|gb|ACR13823.1| putative poly(A) polymerase [Teredinibacter turnerae T7901]
Length = 463
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 132/244 (54%), Gaps = 13/244 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I R +I + + V+ L G++AYLVGG VRDLLL PKDFDV T+A +Q+R F
Sbjct: 36 IPRELISRNAIRVIDQLLDAGYEAYLVGGGVRDLLLGGKPKDFDVATSATPEQLRGIFRN 95
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF---ETVA----KHGEGKETVLLSQIPYGCDEIDLV 175
+ IIG+RF I V +IEV++F VA + + + VLL YG + D
Sbjct: 96 ARIIGKRFQIVHVRFGREIIEVTTFRDNHAVADDNQQAKQSEHGVLLRDNVYGNLKTDAE 155
Query: 176 RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGL 235
R RDFT+N+L+++P ++ +++ G+ DL +R + + ED R+LR +
Sbjct: 156 R------RDFTVNALYYNPRSRELLEFSTGLEDLNDRVIRIVGDPQTRYREDPVRLLRAV 209
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R AA+LG + + + + + + +R+ E+ + G+A +++ LLR Y+L K
Sbjct: 210 RFAAKLGFTIEPVTEAPIREHADYLTHIPPARLFEEVLKLFMSGSATATVNLLREYHLFK 269
Query: 296 ILLP 299
L P
Sbjct: 270 YLFP 273
>gi|401677394|ref|ZP_10809369.1| poly(A) polymerase I [Enterobacter sp. SST3]
gi|400215242|gb|EJO46153.1| poly(A) polymerase I [Enterobacter sp. SST3]
Length = 447
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 140/282 (49%), Gaps = 21/282 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 21 ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG--------EGKETVLLSQIPYGCDEIDL 174
++GRRF + V +IEV++F + G G+ +LL +G E D
Sbjct: 81 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGASDRTTSQRGQNGMLLRDNIFGSIEEDA 140
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++ + DY G+ DL+ +R + + ED R+LR
Sbjct: 141 QR------RDFTINSLYYSVADFTVRDYVGGMQDLKEGLIRLIGTPETRYREDPVRMLRA 194
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L + + + L++ I + +R+ E +L G + LLR YNL
Sbjct: 195 VRFAAKLNMRISPETAEPIPRLATLINDVPPARLFEEALKLLQAGHGFETYNLLREYNLF 254
Query: 295 KILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
+ L P Y + ++PM M+ ++ N D + D
Sbjct: 255 QPLFPTITRYFTE-----NGDSPMERMIAQVLKNTDTRIRND 291
>gi|410471762|ref|YP_006895043.1| poly(A) polymerase [Bordetella parapertussis Bpp5]
gi|408441872|emb|CCJ48370.1| poly(A) polymerase [Bordetella parapertussis Bpp5]
Length = 451
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V +L+ G++AY+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-------KHGEGKETVLLSQIPYGCDEIDL 174
R+ IIGRRF + V +IE S+F A +HG +L +G E D
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGR-----ILRDNVFGSQEEDA 144
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++DP ++ DY G+ DL+ ++R + + ED R+LR
Sbjct: 145 AR------RDFTMNALYYDPHTEEVIDYYQGVQDLKKRQVRIIGDPVKRYREDPVRMLRA 198
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
+R AA+L S + +++S IE + SR+ E+ +L+ G A + LR
Sbjct: 199 VRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLR 253
>gi|425073567|ref|ZP_18476673.1| Poly(A) polymerase [Proteus mirabilis WGLW4]
gi|404594838|gb|EKA95393.1| Poly(A) polymerase [Proteus mirabilis WGLW4]
Length = 446
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 145/281 (51%), Gaps = 22/281 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L + GFQAYLVGG VRDLLL + PKDFD+ T A +++RR F
Sbjct: 11 ISRKDISDNALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEEVRRLFRN 70
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF-------ETVAKH--GEGKETVLLSQIPYGCDEID 173
S ++GRRF + + VIEV++F ET ++ + + +LL +G E D
Sbjct: 71 SRLVGRRFRLAHIMFGPEVIEVATFRGSHEDHETSDRNQSQQAQSGMLLRDNIFGSIEED 130
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+R RDFT+NSL++ + DY G++DL+ +R + + ED R+LR
Sbjct: 131 AIR------RDFTLNSLYYGVDDFAVRDYVGGLADLKSGTIRLIGSPETRYREDPVRMLR 184
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A++L + + + L+ + + +R+ E +L G + L+R + L
Sbjct: 185 AIRFASKLDMRIAPETAEPISQLAPLLRNIPSARLFEESLKLLQTGHGYKTYRLMRHFQL 244
Query: 294 LKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVS 332
L+ L P A+ + +Q + PM M+ ++ N D +S
Sbjct: 245 LEPLFPLVASRITEQ-----QDTPMERMIEQVLKNTDYRIS 280
>gi|309781368|ref|ZP_07676104.1| poly(A) polymerase [Ralstonia sp. 5_7_47FAA]
gi|404396970|ref|ZP_10988764.1| poly(A) polymerase [Ralstonia sp. 5_2_56FAA]
gi|308919781|gb|EFP65442.1| poly(A) polymerase [Ralstonia sp. 5_7_47FAA]
gi|348617056|gb|EGY66537.1| poly(A) polymerase [Ralstonia sp. 5_2_56FAA]
Length = 521
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 127/263 (48%), Gaps = 32/263 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+ A++VGG VRDLLL PKDFDV T A Q++ F RS IIGRRF I
Sbjct: 77 VTSTLQDAGYAAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSRIIGRRFQIVH 136
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------------------- 169
V G +IEVS+F + + V Q+P G
Sbjct: 137 VTFYGGRDQEIIEVSTFRALV------DAVDAEQVPAGKRVKRTELDHHTHAVDASGRVL 190
Query: 170 -DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
D + + ++ RDFT+N+++++P ++DY +G+ D+R LR + + ED
Sbjct: 191 RDNVWGTQAEDATRRDFTVNAMYYNPADETVHDYHHGMEDMRARTLRMIGDPLTRYREDP 250
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G D + L I + +R+ E+ +L G A +S+ L
Sbjct: 251 VRMLRVVRFAAKTGFDIDPDTRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQEL 310
Query: 289 RRYNLLKILLPFHAAYLDQQAGK 311
R+ L + LLP L+Q G+
Sbjct: 311 RKAGLHRGLLPLLDVALEQPMGQ 333
>gi|241664040|ref|YP_002982400.1| poly(A) polymerase [Ralstonia pickettii 12D]
gi|240866067|gb|ACS63728.1| poly(A) polymerase [Ralstonia pickettii 12D]
Length = 520
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 133/276 (48%), Gaps = 32/276 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V L+ G+ A++VGG VRDLLL PKDFDV T A Q++ F
Sbjct: 63 GIDPKLLSRNAVKVTSTLQEAGYSAFIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFR 122
Query: 122 RSEIIGRRFPICRVHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC-------- 169
RS IIGRRF I V G +IEVS+F + + V Q+P G
Sbjct: 123 RSRIIGRRFQIVHVTFYGGRDQEIIEVSTFRALV------DAVDAEQVPAGKRVKRTELD 176
Query: 170 --------------DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLR 215
D + + ++ RDFT+N+++++P ++DY +G+ D+R LR
Sbjct: 177 HHTHAVDASGRVLRDNVWGTQAEDATRRDFTVNAMYYNPADETVHDYHHGMEDMRARTLR 236
Query: 216 TLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYM 275
+ + ED R+LR +R AA+ G D + L I + +R+ E+ +
Sbjct: 237 MIGDPLTRYREDPVRMLRVVRFAAKTGFDIDPDTRAPIAELGPLIHNVPAARLFDEMLKL 296
Query: 276 LSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGK 311
L G A +S+ LR+ L + LLP L+Q G+
Sbjct: 297 LMSGHAWASLQELRKAGLHRGLLPLLDVALEQPMGQ 332
>gi|407893899|ref|ZP_11152929.1| poly(A) polymerase [Diplorickettsia massiliensis 20B]
Length = 424
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 133/260 (51%), Gaps = 22/260 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + VL L G+ AYLVGGC+RDLLL + PKDFD+ T A + +++ F
Sbjct: 8 SISRKNINNNALKVLYRLHEHGYSAYLVGGCLRDLLLHKKPKDFDIATNARPETVKKIFR 67
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFET-----------VAKHGEGKETVLLSQIPYGCD 170
+ +IGRRF I + +IEV++F VA HG +LL YG
Sbjct: 68 NALLIGRRFRIAHIRFGREIIEVTTFRAHSEKKSFKHRMVAAHG-----MLLRDNVYGTI 122
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D+ WR RDFT+N+++++ + DY G++D+ +R + + ED R
Sbjct: 123 EEDV--WR----RDFTMNAVYYNIADFSLVDYCGGLADIEAKIVRMIGDPVARYQEDPVR 176
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + L+S ++ + +R+ E+ + +G A + LLR
Sbjct: 177 LLRAIRFAAKLNFTIDPATAEPIPRLASLLQHVPAARLFEEVLKLFHHGQALKTYQLLRD 236
Query: 291 YNLLKILLPFHAAYLDQQAG 310
Y L + L P A LDQ+
Sbjct: 237 YQLFEQLFPQTAHCLDQETA 256
>gi|197284108|ref|YP_002149980.1| poly(A) polymerase I [Proteus mirabilis HI4320]
gi|425067000|ref|ZP_18470116.1| Poly(A) polymerase [Proteus mirabilis WGLW6]
gi|194681595|emb|CAR40583.1| poly(A) polymerase [Proteus mirabilis HI4320]
gi|404601671|gb|EKB02063.1| Poly(A) polymerase [Proteus mirabilis WGLW6]
Length = 446
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 145/281 (51%), Gaps = 22/281 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L + GFQAYLVGG VRDLLL + PKDFD+ T A +++RR F
Sbjct: 11 ISRKDISDNALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEEVRRLFRN 70
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF-------ETVAKH--GEGKETVLLSQIPYGCDEID 173
S ++GRRF + + VIEV++F ET ++ + + +LL +G E D
Sbjct: 71 SRLVGRRFRLAHIMFGPEVIEVATFRGSHEDHETSDRNQSQQAQSGMLLRDNIFGSIEED 130
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+R RDFT+NSL++ + DY G++DL+ +R + + ED R+LR
Sbjct: 131 AIR------RDFTLNSLYYGVDDFAVRDYVGGLADLKSGTIRLIGSPETRYREDPVRMLR 184
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A++L + + + L+ + + +R+ E +L G + L+R + L
Sbjct: 185 AIRFASKLDMRIAPETAEPISQLAPLLRNIPSARLFEESLKLLQTGHGYKTYRLMRHFQL 244
Query: 294 LKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVS 332
L+ L P A+ + +Q + PM M+ ++ N D +S
Sbjct: 245 LEPLFPLVASRITEQ-----QDTPMERMIEQVLKNTDYRIS 280
>gi|452126424|ref|ZP_21939007.1| poly(A) polymerase [Bordetella holmesii F627]
gi|452129797|ref|ZP_21942370.1| poly(A) polymerase [Bordetella holmesii H558]
gi|451921519|gb|EMD71664.1| poly(A) polymerase [Bordetella holmesii F627]
gi|451922657|gb|EMD72801.1| poly(A) polymerase [Bordetella holmesii H558]
Length = 452
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V ++L+ G++AY+VGG VRDL+ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCEVLRQHGYEAYIVGGAVRDLITGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-------KHGEGKETVLLSQIPYGCDEIDL 174
R+ IIGRRF + V +IE S+F A +HG +L +G E D
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPASADQETDEHGR-----ILRDNVFGSQEEDA 144
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++DP ++ DY NG+ DL+ ++R + + ED R+LR
Sbjct: 145 AR------RDFTMNALYYDPHTEEVIDYHNGVQDLKKRQIRMIGDPVKRYREDPVRMLRA 198
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
+R AA+L + + +++ IE + SR+ E+ +L+ G A + LR
Sbjct: 199 VRFAAKLNGTIDPATRQPISTMAELIENVPASRLFDEMLKLLTCGHAMDCLRQLR 253
>gi|417850813|ref|ZP_12496638.1| poly(A) polymerase [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338220327|gb|EGP05863.1| poly(A) polymerase [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 424
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 148/276 (53%), Gaps = 21/276 (7%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EI 125
MI + + +++ L GF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R +
Sbjct: 1 MINRNALGIVEKLHRHGFEAYIVGGCLRDLLLGKHPKDFDVATNALPEQIQTIFQRQCRL 60
Query: 126 IGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDEIDLVR 176
+GRRF + + VIEV++F E++AK + KE +LL YG E D R
Sbjct: 61 VGRRFRLAHIMFGRDVIEVATFRASHNENNHESLAK--QSKEGMLLRDNVYGTLEQDAER 118
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFT+N+L+++ N + DY +GI DL+ KLR + + ED R+LR +R
Sbjct: 119 ------RDFTVNALYYNLQDNTLRDYFHGIEDLKAGKLRLIGDPVKRYQEDPVRMLRSVR 172
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A+L + K + + L+ ++ + +R+ E +L G + LLR+Y L +
Sbjct: 173 FMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDECLKLLQAGYGVKTYKLLRQYGLFEQ 232
Query: 297 LLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVS 332
L P Y ++ G AE M+++ + D+ V+
Sbjct: 233 LFPSLMPYFTEK-GDSLAER--MILKALTSTDERVA 265
>gi|258544970|ref|ZP_05705204.1| poly(A) polymerase [Cardiobacterium hominis ATCC 15826]
gi|258519773|gb|EEV88632.1| poly(A) polymerase [Cardiobacterium hominis ATCC 15826]
Length = 444
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 151/313 (48%), Gaps = 41/313 (13%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+L+ L GF+AYLVGGC+RDLLL + PKDFD+ T A +QI F +IGRRF +
Sbjct: 30 ILRQLDEAGFEAYLVGGCIRDLLLGKQPKDFDIATNARPEQIASIFRNCRLIGRRFRLAH 89
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETV--LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
+H +IEV++F + ++ +L YG E D+VR RDFTIN+L++
Sbjct: 90 IHFGRYIIEVATFRAPPEREARTDSYGSVLEDNHYGTLEDDVVR------RDFTINALYY 143
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
D ++I DY + D+ +R + +TED R+LR R +A+L + D + A
Sbjct: 144 DSKNDEIRDYVGALDDINRRIIRIIGDPVARYTEDPVRMLRAARFSAKLNMPLEADTEAA 203
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP--------FHAAY 304
+ + ++ + +R+ E+ + G ++ +L+++ L + L P HAAY
Sbjct: 204 IVACRDNLRAVPAARLFDEVQKLFMSGYGQTCFDVLQQHGLFEALFPDAEKTIHYPHAAY 263
Query: 305 LDQQAGKITAENPMMLMRL-FFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVW 363
A+ +MR+ N D+ ++ D+P + A ++W
Sbjct: 264 ---------AQYAKNMMRIALANTDERIAADKPVTIAFLL---------------AAILW 299
Query: 364 VFASVLYHGKWKE 376
+ Y G KE
Sbjct: 300 PVYQLQYRGLLKE 312
>gi|118580041|ref|YP_901291.1| poly(A) polymerase [Pelobacter propionicus DSM 2379]
gi|118502751|gb|ABK99233.1| poly(A) polymerase [Pelobacter propionicus DSM 2379]
Length = 455
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 130/262 (49%), Gaps = 25/262 (9%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R ++ + L LK GF YLVGGCVRDLLL R PKDFDV+T A Q++R F
Sbjct: 18 ISRKLVSPNALRTLYRLKDNGFIGYLVGGCVRDLLLGREPKDFDVVTNATPNQVKRIFRN 77
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----------------ETVAKHG---EGKETVLLS 163
++GRRF + +H + +IEV++F ET +H + + ++L
Sbjct: 78 CRLVGRRFRLAHIHFQDEIIEVATFRSPASDEPDPAPKKPDETEQRHPRMLKDDDGMILR 137
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D +R RDFT+NSL ++ I D+ G++DL +RT+ +
Sbjct: 138 DNVYGTPEEDALR------RDFTVNSLAYNIADFSIIDFTGGLADLSAGIIRTIGDPAVR 191
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
F ED R+LR +R AA+LG + + A+ + + +I R R+ E+ + G
Sbjct: 192 FQEDPVRMLRAVRFAAQLGFTIEEQTRKALVAATDTIVRSAPPRLYEEVLKLFLSGEGAK 251
Query: 284 SICLLRRYNLLKILLPFHAAYL 305
L R L L P + +L
Sbjct: 252 CYDHLSRTGLFAALFPDFSNWL 273
>gi|217972060|ref|YP_002356811.1| poly(A) polymerase [Shewanella baltica OS223]
gi|386342438|ref|YP_006038804.1| poly(A) polymerase [Shewanella baltica OS117]
gi|217497195|gb|ACK45388.1| poly(A) polymerase [Shewanella baltica OS223]
gi|334864839|gb|AEH15310.1| poly(A) polymerase [Shewanella baltica OS117]
Length = 513
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 147/295 (49%), Gaps = 19/295 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+AYLVGG VRDLLL PKDFDV+T A ++I++ F
Sbjct: 71 ISRKQISENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRN 130
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEIDL 174
++GRRF + + VIEV++F HGE E V LL YG EID
Sbjct: 131 CRVVGRRFRLAHIVFGRDVIEVATFR--GHHGESNEKVSKANAEGRLLRDNVYG--EID- 185
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDFT+N+L++D I Y G++DL+ LR + + ED R+LR
Sbjct: 186 ---EDAERRDFTVNALYYDISDYSIRSYGGGMTDLKAGTLRLIGDPETRYREDPVRMLRA 242
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + + L+ ++ + +R+ E+ + G A ++ L++ Y L
Sbjct: 243 VRFATKLNMGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLF 302
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFH 349
L P AA L T + M+ + + D+ V+ D+P + + L ++
Sbjct: 303 APLFPQVAALLKDDPKGTTMK---MVQAIMKSTDQRVNEDKPVTPSFFYAALLWY 354
>gi|406941721|gb|EKD74135.1| hypothetical protein ACD_45C00063G0006 [uncultured bacterium]
Length = 446
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 133/251 (52%), Gaps = 11/251 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + VL L + G+ AYLVGGCVRDLLL+R PKDFD+ T A + +R+ F
Sbjct: 31 SISRDDIDPNALKVLYRLHASGYAAYLVGGCVRDLLLKRQPKDFDIATNARPEDVRKLFK 90
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAK-----HGEGKETVLLSQIPYGCDEIDLVR 176
+IG+RF + + +IEV++F T + HG+ + +++ YG E D R
Sbjct: 91 NCRLIGKRFRLAHILFGRDIIEVATFRTHHEKAHEHHGKMHQGMIVRDNVYGNIEDDAYR 150
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFTIN+L+++ + DY G+ D++ LR + F ED R+LR R
Sbjct: 151 ------RDFTINALYYNIADFSVVDYIGGMQDIQAKLLRIIGEPLQRFHEDPVRLLRAAR 204
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
+L L+ + + + LS ++ + +R+ E+ + G ++ +L++Y+L +
Sbjct: 205 FIGKLHLNVTSETEKPLTQLSYLLQNVSSARLFQEVLKLFHEGEITATFAVLQKYHLFEQ 264
Query: 297 LLPFHAAYLDQ 307
L P AA L Q
Sbjct: 265 LFPQTAACLAQ 275
>gi|152999383|ref|YP_001365064.1| poly(A) polymerase [Shewanella baltica OS185]
gi|373950825|ref|ZP_09610786.1| poly(A) polymerase [Shewanella baltica OS183]
gi|386323342|ref|YP_006019459.1| poly(A) polymerase [Shewanella baltica BA175]
gi|418024367|ref|ZP_12663350.1| poly(A) polymerase [Shewanella baltica OS625]
gi|151364001|gb|ABS07001.1| poly(A) polymerase [Shewanella baltica OS185]
gi|333817487|gb|AEG10153.1| poly(A) polymerase [Shewanella baltica BA175]
gi|353536327|gb|EHC05886.1| poly(A) polymerase [Shewanella baltica OS625]
gi|373887425|gb|EHQ16317.1| poly(A) polymerase [Shewanella baltica OS183]
Length = 513
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 147/295 (49%), Gaps = 19/295 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+AYLVGG VRDLLL PKDFDV+T A ++I++ F
Sbjct: 71 ISRKQISENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRN 130
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEIDL 174
++GRRF + + VIEV++F HGE E V LL YG EID
Sbjct: 131 CRVVGRRFRLAHIVFGRDVIEVATFR--GHHGESNEKVSKANAEGRLLRDNVYG--EID- 185
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDFT+N+L++D I Y G++DL+ LR + + ED R+LR
Sbjct: 186 ---EDAERRDFTVNALYYDISDYSIRSYGGGMTDLKAGTLRLIGDPETRYREDPVRMLRA 242
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + + L+ ++ + +R+ E+ + G A ++ L++ Y L
Sbjct: 243 VRFATKLNMGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLF 302
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFH 349
L P AA L T + M+ + + D+ V+ D+P + + L ++
Sbjct: 303 APLFPQVAALLKDDPKGTTMK---MVQAIMKSTDQRVNEDKPVTPSFFYAALLWY 354
>gi|56461352|ref|YP_156633.1| poly(A) polymerase [Idiomarina loihiensis L2TR]
gi|56180362|gb|AAV83084.1| Poly(A) polymerase [Idiomarina loihiensis L2TR]
Length = 462
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 143/279 (51%), Gaps = 16/279 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + + VL L + GF+AYLVGGC+RD+LL PKDFDV T A +QI+ F
Sbjct: 31 VSRNDISKNAIKVLYRLHNSGFEAYLVGGCIRDILLGLEPKDFDVTTNATPEQIKSLFRN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG-----EGKETVLLSQIPYGC---DEIDL 174
+IGRRF + V VIEV++F HG E K+ Q +G D +
Sbjct: 91 CRLIGRRFRLAHVVFGKEVIEVATFR--GHHGASPQEENKKNRTADQDEHGQLVRDNVYG 148
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDFT N+L+++ IYD+ANG+ D+ LR + + + ED R+LR
Sbjct: 149 SIEEDAERRDFTANALYYNIADFAIYDFANGVDDINAGILRMIGDPEVRYREDPVRMLRA 208
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + + + L+ + + +R+ E M G AE++ +++ + L
Sbjct: 209 VRFATKLNMQMDNSVSGPLKELAPLLINIPPARLFDEFLKMFMSGKAEANFLMMKDFGLF 268
Query: 295 KILLPFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVS 332
+ L P Y+ D+Q+ M+++ F + D+ ++
Sbjct: 269 QQLFPMLKDYVADEQSPAYQ-----MMLKAFKDTDRRIA 302
>gi|94500957|ref|ZP_01307482.1| tRNA nucleotidyltransferase/poly(A) polymerase [Bermanella
marisrubri]
gi|94426897|gb|EAT11880.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oceanobacter sp.
RED65]
Length = 445
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 129/245 (52%), Gaps = 13/245 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R I + + VL LK G++A+LVGG VRDLLL PKDFDV+T A+ +++ + F
Sbjct: 29 GISRTDISENALKVLYRLKKSGYEAHLVGGGVRDLLLGLHPKDFDVVTDASPEEVHKLFK 88
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-------VLLSQIPYGCDEIDL 174
S IIGRRF + V +IEV++F + EGK +LL YG + D
Sbjct: 89 NSRIIGRRFRLVHVTFGRDMIEVATFRGDHGNAEGKHQSKTNEAGMLLRDNVYGSIDEDA 148
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
+R RDFTIN+L+++ + YA GI D+ +LR + + ED R+LR
Sbjct: 149 MR------RDFTINALYYNIADFSVKSYAGGIDDIHAKRLRLIGDPETRYREDPVRMLRA 202
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
R AA+LG S K + L+ + + +R+ E+ + G A+++ L+ L
Sbjct: 203 ARFAAKLGFSIDKSSKAPIKELAPLLRDIPPARLFEEVLKLFMAGYAKATFEQLQALGLF 262
Query: 295 KILLP 299
+ L P
Sbjct: 263 EPLFP 267
>gi|375266601|ref|YP_005024044.1| poly(A) polymerase [Vibrio sp. EJY3]
gi|369841921|gb|AEX23065.1| poly(A) polymerase [Vibrio sp. EJY3]
Length = 454
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 124/246 (50%), Gaps = 17/246 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F
Sbjct: 31 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQRPKDFDIATNATPEQIKQLFRN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEQKNKSISQQSKEGMLLRDNVYGTIDED 148
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINS++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 149 AER------RDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLR 202
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L +D + +S+ + + +R+ E +L G + LLR YNL
Sbjct: 203 AIRFAVKLDFDIEEDTAAPIEEMSTLLRDIPSARLFEESLKLLQSGQGLETYHLLREYNL 262
Query: 294 LKILLP 299
+ L P
Sbjct: 263 FQQLFP 268
>gi|254428702|ref|ZP_05042409.1| poly(A) polymerase subfamily [Alcanivorax sp. DG881]
gi|196194871|gb|EDX89830.1| poly(A) polymerase subfamily [Alcanivorax sp. DG881]
Length = 432
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 18/283 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R + + + VL L GF+AYLVGGC+RD+L R PKDFDV T A +Q+ R F R
Sbjct: 9 ISRKQVSRAALDVLYGLHKGGFEAYLVGGCLRDILCGREPKDFDVSTNATPEQVNRLFKR 68
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA--------KHGEGKET-VLLSQIPYGCDEID 173
S IIGRRF I V VIEVS+F A KH +ET ++L +G E D
Sbjct: 69 SRIIGRRFQIVHVRFGREVIEVSTFRAKASDDNQDQNKHHAHEETGLVLRDNTWGSIEED 128
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+R RDFTIN+L+++ ++D+ + D+ +R + F ED R+LR
Sbjct: 129 ALR------RDFTINALYYNIADFTLHDFVGSMGDIDQEVIRLIGNPEQRFREDPVRMLR 182
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
R AA+LG + + ++ + ++ +R+ E+ + G A +S L+ L
Sbjct: 183 AARFAAKLGFHIEESTARRIPDMAELLLQVPAARLFDEVLKLFLSGHARASYEQLQELGL 242
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
+ L P L+ G+I ML+ N D+ + D+P
Sbjct: 243 FRFLFPETQQALESDQGEIWE---AMLLAAMDNTDRRLLMDKP 282
>gi|416162745|ref|ZP_11606812.1| poly(A) polymerase family protein [Neisseria meningitidis N1568]
gi|325127938|gb|EGC50840.1| poly(A) polymerase family protein [Neisseria meningitidis N1568]
Length = 374
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/244 (36%), Positives = 130/244 (53%), Gaps = 14/244 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK FQAY+VGG +RDLLL PKDFDV T A +Q+ + F RS IIGRRF I
Sbjct: 44 VIRRLKGARFQAYVVGGAIRDLLLGIEPKDFDVATDATPEQVHKLFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +IEV++F AK + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMNGAEIIEVTTFRGGAKVHQNAHGRIMKDNTYGSIEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ NGI+D+ +L + A + ED RILR +R++ +LG ++
Sbjct: 158 EKEEILDFHNGIADVAARRLVMIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETAA--- 214
Query: 255 SLSSSIERLDK---SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL--DQQA 309
++ SI RL +R+ E+ +L G A + L +++ + P A D A
Sbjct: 215 PIAESICRLKHEPVARLFDEIMKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGIA 274
Query: 310 GKIT 313
GK+T
Sbjct: 275 GKMT 278
>gi|126175689|ref|YP_001051838.1| poly(A) polymerase [Shewanella baltica OS155]
gi|125998894|gb|ABN62969.1| poly(A) polymerase [Shewanella baltica OS155]
Length = 450
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 147/295 (49%), Gaps = 19/295 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+AYLVGG VRDLLL PKDFDV+T A ++I++ F
Sbjct: 8 ISRKQISENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRN 67
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEIDL 174
++GRRF + + VIEV++F HGE E V LL YG EID
Sbjct: 68 CRVVGRRFRLAHIVFGRDVIEVATFR--GHHGESNEKVSKANAEGRLLRDNVYG--EID- 122
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDFT+N+L++D I Y G++DL+ LR + + ED R+LR
Sbjct: 123 ---EDAERRDFTVNALYYDISDYSIRSYGGGMTDLKAGTLRLIGDPETRYREDPVRMLRA 179
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + + L+ ++ + +R+ E+ + G A ++ L++ Y L
Sbjct: 180 VRFATKLNMGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLF 239
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFH 349
L P AA L T + M+ + + D+ V+ D+P + + L ++
Sbjct: 240 APLFPQVAALLKDDPKGTTMK---MVQAIMKSTDQRVNEDKPVTPSFFYAALLWY 291
>gi|374584631|ref|ZP_09657723.1| poly(A) polymerase [Leptonema illini DSM 21528]
gi|373873492|gb|EHQ05486.1| poly(A) polymerase [Leptonema illini DSM 21528]
Length = 589
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 12/231 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+ L G+++Y VGGC+RDLLL + PKDFD++T A Q+R+ F S +IGRRF +
Sbjct: 46 VINRLNRYGYKSYFVGGCIRDLLLGKKPKDFDIVTNATPTQLRKLFSNSRVIGRRFKLVH 105
Query: 135 VHIKGS-VIEVSSFETVAKHG-----EGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTIN 188
V +G VIEVS+F ++ +H E + L +G + D+ R RDFTIN
Sbjct: 106 VVFRGGKVIEVSTFRSLPEHRLDSSLESDDMYLKRDNIFGTPKEDVAR------RDFTIN 159
Query: 189 SLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKD 248
SL+FDP I DY G D++ ++ + +SF ED R+LR + A LG S
Sbjct: 160 SLYFDPRNESIIDYTGGFEDMKNQRINVIGDPDISFKEDPVRMLRAAKFAPLLGFSMHSA 219
Query: 249 IDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ I + + +R++ E + G + + LL+ L+P
Sbjct: 220 CAKGIRKNRFEIAKANSNRLLEEYFKIFRTGKSAKIFGSMYETGLLETLMP 270
>gi|76789141|ref|YP_328227.1| polyA polymerase [Chlamydia trachomatis A/HAR-13]
gi|76167671|gb|AAX50679.1| polyA polymerase [Chlamydia trachomatis A/HAR-13]
Length = 425
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 132/232 (56%), Gaps = 17/232 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK G++AY+VGGC+RDLLL+ PKDFD+ T+A ++++ F ++G+RF +
Sbjct: 49 VVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAH 108
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEV++F + G +E L+++ +G E D++R RDFTIN LF+D
Sbjct: 109 IRFPNQIIEVATF----RSGSNEEDSLITKDNLWGSAEEDVLR------RDFTINGLFYD 158
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+ DL+ LRT+ +L F +D R+LR L+I +R F D T +
Sbjct: 159 PSAEIIIDYTGGVEDLKSRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA--FTVDPKT-L 215
Query: 254 HSLSSSIERLDKS---RIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
+L S L KS R+ E+ +LS G + L + +L+IL P+ A
Sbjct: 216 EALQESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMA 267
>gi|254482604|ref|ZP_05095843.1| poly(A) polymerase subfamily protein [marine gamma proteobacterium
HTCC2148]
gi|214037295|gb|EEB77963.1| poly(A) polymerase subfamily protein [marine gamma proteobacterium
HTCC2148]
Length = 432
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 143/289 (49%), Gaps = 28/289 (9%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + V+ L+SQG QAYLVGG VRDLLL PKDFD+ T A +++ F
Sbjct: 11 ISRKNISDSALKVMSRLRSQGHQAYLVGGAVRDLLLGSNPKDFDIATDATPEEVHGLFRN 70
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET---------------VLLSQIPY 167
S IIGRRF I V +IEV++F H G E +LL Y
Sbjct: 71 SRIIGRRFRIVHVRFGREIIEVTTFR--GHHEGGNEASPATGGNHSRQSDKGLLLRDNVY 128
Query: 168 GCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
G E D VR RD T+N+L++D +++D+ NG++DL ++ + + + ED
Sbjct: 129 GTLEEDAVR------RDLTVNALYYDSGKFEVFDHVNGLTDLEKRQICIIGEPAVRYRED 182
Query: 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
R+LR +R AA+L K+ A+ + ++ + + +R+ E + G A +++
Sbjct: 183 PVRMLRTVRFAAKLNFDIEKNTAKAIPACAALLREIPSARLFDEFLKLFLSGYAAATLEQ 242
Query: 288 LRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L ++LL+ L + L Q A + M N DK ++ D+P
Sbjct: 243 LLEHDLLQFLFDETSHLLHQDAMSLALVRAAMA-----NTDKRIADDKP 286
>gi|223938798|ref|ZP_03630686.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[bacterium Ellin514]
gi|223892496|gb|EEF58969.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[bacterium Ellin514]
Length = 440
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 9/231 (3%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L++ GF AY VGGCVRD L R PKDFDV T A +Q+ R F R+ +GR+F +
Sbjct: 10 LVRRLQTAGFDAYWVGGCVRDYFLGREPKDFDVATNAVPEQVERIFQRTIPVGRKFGVLI 69
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V KG ++++F + + +G+ Q+ +G + D R RDFTIN LF+DP
Sbjct: 70 VLEKGFEFQIATFRAESDYQDGRHP---EQVTFGDPKADASR------RDFTINGLFYDP 120
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+ ++D+ G DL+ LRT+ F ED R+LR +R AA+L AM
Sbjct: 121 VNDVLHDWVGGEVDLKAKVLRTIGEPAERFAEDHLRLLRAVRFAAQLNFQIEAKTFAAMV 180
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL 305
+ + I+ + RI EL + A + LLR LL+ +LP AA +
Sbjct: 181 ANAPKIKTISAERIREELMKVFRPPHAARGLDLLRESGLLEQVLPEIAATI 231
>gi|113869035|ref|YP_727524.1| Poly(A) polymerase [Ralstonia eutropha H16]
gi|113527811|emb|CAJ94156.1| Poly(A) polymerase [Ralstonia eutropha H16]
Length = 513
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 142/299 (47%), Gaps = 28/299 (9%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+QAY+VGG VRDLLL PKDFDV T A Q++ F RS IIGRRF I
Sbjct: 48 VTSTLQQAGYQAYIVGGAVRDLLLGIKPKDFDVATNATPDQVQALFRRSRIIGRRFQIVH 107
Query: 135 VHIKGS----VIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDEIDLV------ 175
V G +IEVS+F ET+ + K L S+ + D V
Sbjct: 108 VTFYGGREQEIIEVSTFRALVDAIASETLPEGRRLKRAELDSKT-HAIDASGRVLRDNVW 166
Query: 176 --RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+ ++ RDFTIN++++DP ++DY +G+ D+R LR + + ED R+LR
Sbjct: 167 GSQAEDAERRDFTINAMYYDPAAQTVHDYHHGMEDIRARTLRMIGDPVTRYREDPIRMLR 226
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+ + + L+S I + +R+ E+ +L G A +S+ LR+ L
Sbjct: 227 VVRFAAKTSFDIDEATRHPIAGLASLIHNVPSARLFDEMLKLLMSGHAWASLQELRKAGL 286
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
+ LLP L+Q G+ + N D+ V +P L +H L
Sbjct: 287 HQGLLPLLDVALEQPMGQ------RFVQLALDNTDRRVQAGKPVSPGFLFAALLWHHVL 339
>gi|116515068|ref|YP_802697.1| hypothetical protein BCc_128 [Buchnera aphidicola BCc]
gi|116256922|gb|ABJ90604.1| poly(A) polymerase I [Buchnera aphidicola BCc]
Length = 407
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 90/265 (33%), Positives = 138/265 (52%), Gaps = 16/265 (6%)
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
K + ++N I++ I + S VL L G++AYLVGG VRDLLL + PKDFD+ T A
Sbjct: 2 KLIINKNHNISKKKISRNSMKVLYRLNKLGYEAYLVGGGVRDLLLGKKPKDFDIATNAKP 61
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKH----------GEGKETVLLS 163
+IR+ F +IGRRF I + K +IEVS+F H + K+ +LLS
Sbjct: 62 DEIRKLFKNCRLIGRRFIIAHLIFKNEIIEVSTFRAKNNHLKKNNLYYKKIKTKKGILLS 121
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
+G E D R RD TIN+L++ I DY GI D++ K+R + A
Sbjct: 122 DNTFGKIEEDAYR------RDITINALYYSIKDFGIRDYIGGIKDIKLKKIRLIGNAETR 175
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R + +L + K + + LS+ ++ + +R+ E + +G
Sbjct: 176 YREDPVRMLRVIRFSVQLNMHIDKKTEKPIIKLSNLLKEIPSARLFNESIKLFCFGYGYL 235
Query: 284 SICLLRRYNLLKILLPFHAAYLDQQ 308
+ LR+Y+L+ LLPF L Q+
Sbjct: 236 TYIRLRKYSLIYPLLPFLFNQLSQK 260
>gi|160874003|ref|YP_001553319.1| poly(A) polymerase [Shewanella baltica OS195]
gi|378707243|ref|YP_005272137.1| poly(A) polymerase [Shewanella baltica OS678]
gi|160859525|gb|ABX48059.1| poly(A) polymerase [Shewanella baltica OS195]
gi|315266232|gb|ADT93085.1| poly(A) polymerase [Shewanella baltica OS678]
Length = 513
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 147/295 (49%), Gaps = 19/295 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+AYLVGG VRDLLL PKDFDV+T A ++I++ F
Sbjct: 71 ISRKQISENALKVLYRLNKSGFKAYLVGGGVRDLLLGIEPKDFDVVTNATPEEIKKLFRN 130
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEIDL 174
++GRRF + + VIEV++F HGE E V LL YG EID
Sbjct: 131 CRVVGRRFRLAHIVFGRDVIEVATFR--GHHGESNEKVSKANAEGRLLRDNVYG--EID- 185
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDFT+N+L++D I Y G++DL+ LR + + ED R+LR
Sbjct: 186 ---EDAERRDFTVNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRA 242
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + + L+ ++ + +R+ E+ + G A ++ L++ Y L
Sbjct: 243 VRFATKLNMGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAGKALANFELMQEYKLF 302
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFH 349
L P AA L T + M+ + + D+ V+ D+P + + L ++
Sbjct: 303 APLFPQVAALLKDDPKGTTMK---MVQAIMKSTDQRVNEDKPVTPSFFYAALLWY 354
>gi|444377501|ref|ZP_21176717.1| Poly(A) polymerase [Enterovibrio sp. AK16]
gi|443678418|gb|ELT85088.1| Poly(A) polymerase [Enterovibrio sp. AK16]
Length = 455
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 136/270 (50%), Gaps = 17/270 (6%)
Query: 39 MCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLL 98
M D+ + +D + + + GI+R I + + VL L GF+AYLVGG VRDLLL
Sbjct: 1 MNRDNKTRAIDDLKLEVIPRQEHGISRKDISENALKVLYRLNKAGFEAYLVGGGVRDLLL 60
Query: 99 RRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGK- 157
+ PKDFD+ T A +++R+ F ++GRRF + + VIEV++F HG K
Sbjct: 61 NKQPKDFDIATNATPEEVRKLFRNCRLVGRRFRLAHILFGRDVIEVATFR--GHHGADKG 118
Query: 158 --------ETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDL 209
+ +LL YG + D R RDFT+N+L+++ + DYA G+ DL
Sbjct: 119 DKSASQSNDGMLLRDNVYGTIDEDAER------RDFTVNALYYNIDDFSVRDYAGGVEDL 172
Query: 210 RCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIM 269
+ +R + + ED R+LR +R AA+L + + + +L+ + + +R+
Sbjct: 173 KNRVIRLIGDPETRYREDPVRMLRAVRFAAKLDMQINEATAAPIPALAHLLRDIPAARLF 232
Query: 270 MELNYMLSYGAAESSICLLRRYNLLKILLP 299
E +L G + LLR YNL L P
Sbjct: 233 EESLKLLQSGNGLDTYRLLRDYNLFSPLFP 262
>gi|421895698|ref|ZP_16326098.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
MolK2]
gi|206586863|emb|CAQ17448.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
MolK2]
Length = 516
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 138/304 (45%), Gaps = 38/304 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+ A++VGG VRDLLL PKDFDV T A +Q++ F RS IIGRRF I
Sbjct: 73 VTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSRIIGRRFQIVH 132
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------------------- 169
V G +IEVS+F + + V Q+P G
Sbjct: 133 VTFYGGREQEIIEVSTFRALV------DAVESEQVPAGKRVKRTELDHHTHAVDASGRVL 186
Query: 170 -DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
D + + ++ RDFT+N+++++P ++DY G+ D+R LR + + + ED
Sbjct: 187 RDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHRGMEDMRARLLRMIGDPHTRYREDP 246
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G + L I + +R+ E+ +L G A +S+ L
Sbjct: 247 VRMLRAVRFAAKTGFDIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQEL 306
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
R+ L + LLP L+Q G+ + N D+ V +P L +
Sbjct: 307 RKAGLHRGLLPLLDVALEQPMGE------RFVQLALDNTDERVKAGKPVSPGFLFASLLW 360
Query: 349 HQAL 352
H L
Sbjct: 361 HHVL 364
>gi|319638160|ref|ZP_07992923.1| PolyA polymerase [Neisseria mucosa C102]
gi|317400433|gb|EFV81091.1| PolyA polymerase [Neisseria mucosa C102]
Length = 450
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 139/274 (50%), Gaps = 11/274 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI M+ + + K L GFQAY+VGG VRDLLL PKDFD+ T A +QIR+ F
Sbjct: 30 GIHADMLSFAAEKIAKRLHEAGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIRKIFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
RS IIG RF I V I IEV++F K + + ++ YG E D +R
Sbjct: 90 RSRIIGHRFQIVHVMIGPETIEVTTFRGGDKVQQNAQGRIMKDNTYGSIEEDAMR----- 144
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT N+L++DP +I+D+ G++D+ KL + + ED RILR +R++ +L
Sbjct: 145 -RDFTCNALYYDPIKEEIWDFHQGVADVADKKLVMIGNPAERYQEDPVRILRAVRLSGKL 203
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
G + + + ++ +R+ E+ +L G S C L+R N L I H
Sbjct: 204 GFEVEEQTALPIAEYAGRLKNEPVARLFDEIMKILFSG--HSRAC-LKRLNELGIPEGIH 260
Query: 302 AAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
LD A+ M+++ L N D+ + D+
Sbjct: 261 -PLLDALKTAEAADKRMIMLAL-KNTDERLRADK 292
>gi|412341619|ref|YP_006970374.1| poly(A) polymerase [Bordetella bronchiseptica 253]
gi|408771453|emb|CCJ56254.1| poly(A) polymerase [Bordetella bronchiseptica 253]
Length = 451
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + + V +L+ G++AY+VGG VRDL++ PKDFDV T A +QIR F
Sbjct: 30 GIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-------KHGEGKETVLLSQIPYGCDEIDL 174
R+ IIGRRF + V +IE S+F A +HG +L +G E D
Sbjct: 90 RARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGR-----ILRDNVFGSQEEDA 144
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++DP ++ DY G+ DL+ ++R + + ED R+LR
Sbjct: 145 AR------RDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRA 198
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
+R AA+L + + +++S IE + SR+ E+ +L+ G A + LR
Sbjct: 199 VRFAAKLNGTIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLR 253
>gi|126666509|ref|ZP_01737487.1| tRNA nucleotidyltransferase/poly(A) polymerase [Marinobacter sp.
ELB17]
gi|126628897|gb|EAZ99516.1| tRNA nucleotidyltransferase/poly(A) polymerase [Marinobacter sp.
ELB17]
Length = 454
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 131/256 (51%), Gaps = 24/256 (9%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I +P+ VL L G++AYLVGG VRD+LL PKDFD+ T A +++ F
Sbjct: 36 VSRTAISEPAKKVLHRLNKAGYEAYLVGGGVRDILLSGQPKDFDIATDATPEEVHELFRN 95
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA-------------KHGEGKETVLLSQIPYGC 169
S +IGRRF I V VIEV++F A +HG+ LL YG
Sbjct: 96 SRLIGRRFRIVHVVFGREVIEVTTFRGNANPADDDDDDRKTSEHGQ-----LLRDNVYGN 150
Query: 170 DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCA 229
E D +R RDFTIN+L++ + D+ANGI DL ++R + + ED
Sbjct: 151 LEEDALR------RDFTINALYYCIRDFSVIDFANGIDDLNNRQMRLIGDPETRYREDPV 204
Query: 230 RILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
R+LR +R AA+L + + + L+ + + +R+ E+ + S G E++ LR
Sbjct: 205 RMLRAIRFAAKLDFAIEPATEAPIRELAPLLTHIPAARLFDEVLKLFSAGYGEATFDKLR 264
Query: 290 RYNLLKILLPFHAAYL 305
Y+LL L P A+ L
Sbjct: 265 HYDLLAPLFPDTASAL 280
>gi|440289057|ref|YP_007341822.1| poly(A) polymerase [Enterobacteriaceae bacterium strain FGI 57]
gi|440048579|gb|AGB79637.1| poly(A) polymerase [Enterobacteriaceae bacterium strain FGI 57]
Length = 475
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 152/319 (47%), Gaps = 27/319 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 47 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFR 106
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F + + G+ +LL +G E D
Sbjct: 107 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEDAQSDRTTSQRGQNGMLLRDNIFGSIEED 166
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G+ DL +R + + ED R+LR
Sbjct: 167 AQR------RDFTINSLYYSVADFTVRDYVGGMQDLEEGVIRLIGDPETRYREDPVRMLR 220
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+L + ++ + L++ I + +R+ E +L G + LLR YNL
Sbjct: 221 AVRFAAKLSMRISEETAEPIPRLATLINDVPPARLFEESLKLLQAGYGYDTYKLLREYNL 280
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD---RPA---DYTLWVGLLS 347
+ L P Y ++ G E ++ ++F N D + D PA W LL
Sbjct: 281 FQPLFPTITRYFTEE-GDSAMER--IISQVFKNTDNRIRNDMRVNPAFLFAAMFWYPLLE 337
Query: 348 FHQALVSDP----QDAFVV 362
Q + + DAF +
Sbjct: 338 MAQKITQESGLTYHDAFAL 356
>gi|56479470|ref|YP_161059.1| RNA-poly(A) polymerase [Aromatoleum aromaticum EbN1]
gi|56315513|emb|CAI10158.1| RNA-poly(A) polymerase [Aromatoleum aromaticum EbN1]
Length = 452
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 127/232 (54%), Gaps = 11/232 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
G+ R + + V +L+ G +A++VGG VRDLL+ PKD+DV T+A +++R F
Sbjct: 31 GVRREQLSPVARKVCTVLQEHGHKAFVVGGAVRDLLVGHPPKDYDVATSATPEEVRALFR 90
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFET--VAKHGEGKE--TVLLSQIPYGCDEIDLVRW 177
RS IIGRRF I V IEVS+F VA+ E E VL + +G D R
Sbjct: 91 RSRIIGRRFKIVHVMSGPETIEVSTFRASQVAESTETDEHGRVLRDNV-FGSQAEDATR- 148
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFT+N+L++DP +I DY +G++DL+ LR + + ED R+LRG+R+
Sbjct: 149 -----RDFTVNALYYDPTTEQIVDYHHGVADLKQKTLRIIGDPRARYREDPVRMLRGVRL 203
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
A+LGL+ + ++S +E + +R+ E+ +L G A + LR
Sbjct: 204 GAKLGLTLDPAARHPIREMASLLENVPAARLFDEMLKLLFSGYALKCLEQLR 255
>gi|87121697|ref|ZP_01077584.1| polyA polymerase [Marinomonas sp. MED121]
gi|86162948|gb|EAQ64226.1| polyA polymerase [Marinomonas sp. MED121]
Length = 478
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 137/286 (47%), Gaps = 20/286 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL L GF A+LVGGC+RD L+ PKDFDV+T A +++ F S +IGRRF +
Sbjct: 47 VLYRLNKAGFDAFLVGGCIRDHLIDLAPKDFDVVTNATPEEVHNLFSNSRLIGRRFRLVH 106
Query: 135 VHIKGSVIEVSSFETVAKHGE-------------GKETVLLSQIPYGCDEIDLVRWRNSI 181
V +IEVS+F A+ E ++L +G E D R
Sbjct: 107 VTFGREIIEVSTFRATAQQSEDSKKDDKHSDSARSAHGMILRDNIFGDIEQDAER----- 161
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDFT N+L++D I+DY G+ D+ K+R + A L + ED R+LR +R AA+L
Sbjct: 162 -RDFTFNALYYDISDFSIHDYCGGLEDIAAKKVRIIGDAKLRYQEDPVRMLRAIRFAAKL 220
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
+ + ++ ++ + +R+ E+ +L G ++ LLR Y L + L P
Sbjct: 221 DFDIEAETAAPIKEMAHLLDHIPPARLFEEVLKLLGSGNGVTTYKLLREYGLFRYLFPET 280
Query: 302 AAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR-PADYTLWVGLL 346
L + ++++ N DK ++ + A Y L+ LL
Sbjct: 281 DELLRSNWQRADINPEALILQGLINTDKRIAEGKTTAPYFLYAFLL 326
>gi|451975919|ref|ZP_21927095.1| Poly(A) polymerase [Vibrio alginolyticus E0666]
gi|451930136|gb|EMD77854.1| Poly(A) polymerase [Vibrio alginolyticus E0666]
Length = 455
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 129/262 (49%), Gaps = 17/262 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F
Sbjct: 31 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEQKNKSISQQSKEGMLLRDNVYGTIDED 148
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINS++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 149 AER------RDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLR 202
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L +D + ++ + + +R+ E +L G + LLR YNL
Sbjct: 203 AVRFAVKLDFDIEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNL 262
Query: 294 LKILLPFHAAYLDQQAGKITAE 315
+ L P AA+ + T +
Sbjct: 263 FQQLFPTIAAHFTEDYSSYTEQ 284
>gi|255068167|ref|ZP_05320022.1| poly(A) polymerase [Neisseria sicca ATCC 29256]
gi|255047594|gb|EET43058.1| poly(A) polymerase [Neisseria sicca ATCC 29256]
Length = 456
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 9/222 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ L +GFQAY+VGG VRDLLL PKDFD+ T A +QI + F RS IIGRRF I
Sbjct: 44 VVRRLHDEGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQIHKIFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V + IEV++F K + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMVGPETIEVTTFRGGGKVQQNAHGRIMKDNTYGSMEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ +G+ D+ KL + A + ED RILR +R++ +LG ++ +
Sbjct: 158 IKEEIIDFHHGVGDIADRKLVMIGNAAERYQEDPVRILRAVRLSGKLGFDVEENTAAPIP 217
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
+ ++ +R+ E+ +L G A C L+R N L +
Sbjct: 218 EQAGRLKHEPVARLFDEIMKLLFSGYARE--C-LKRLNSLGV 256
>gi|350532352|ref|ZP_08911293.1| poly(A) polymerase [Vibrio rotiferianus DAT722]
Length = 455
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 127/255 (49%), Gaps = 17/255 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F
Sbjct: 31 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEQKNKNVSQQSKEGMLLRDNVYGTIDED 148
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINS++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 149 AER------RDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLR 202
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L +D + ++ + + +R+ E ML G + LLR YNL
Sbjct: 203 AVRFAVKLDFDIEEDTAAPIEEMAPLLRDIPSARLFEESLKMLQSGHGLETYHLLREYNL 262
Query: 294 LKILLPFHAAYLDQQ 308
+ L P A + ++
Sbjct: 263 FQQLFPAIAEHFTEE 277
>gi|269961935|ref|ZP_06176290.1| Poly(A) polymerase [Vibrio harveyi 1DA3]
gi|269833258|gb|EEZ87362.1| Poly(A) polymerase [Vibrio harveyi 1DA3]
Length = 455
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 125/252 (49%), Gaps = 17/252 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F
Sbjct: 31 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEQKNKNVSQQSKEGMLLRDNVYGTIDED 148
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINS++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 149 AER------RDFTINSMYYNIADYSIHDYARGIEDLEDRLVRLIGDPETRYREDPVRMLR 202
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L +D + ++ + + +R+ E ML G + LLR YNL
Sbjct: 203 AVRFAVKLDFDIEEDTAAPIEEMAPLLRDIPSARLFEESLKMLQSGHGLETYHLLREYNL 262
Query: 294 LKILLPFHAAYL 305
+ L P A +
Sbjct: 263 FQQLFPVIAEHF 274
>gi|83748968|ref|ZP_00945977.1| poly(a) polymerase / tRNA nucleotidyltransferase [Ralstonia
solanacearum UW551]
gi|207744197|ref|YP_002260589.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
IPO1609]
gi|83724391|gb|EAP71560.1| poly(a) polymerase / tRNA nucleotidyltransferase [Ralstonia
solanacearum UW551]
gi|206595602|emb|CAQ62529.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
IPO1609]
Length = 516
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 138/304 (45%), Gaps = 38/304 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+ A++VGG VRDLLL PKDFDV T A +Q++ F RS IIGRRF I
Sbjct: 73 VTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQALFRRSRIIGRRFQIVH 132
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------------------- 169
V G +IEVS+F + + V Q+P G
Sbjct: 133 VTFYGGREQEIIEVSTFRALV------DAVESEQVPAGKRVKRTELDHHTHAVDASGRVL 186
Query: 170 -DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
D + + ++ RDFT+N+++++P ++DY G+ D+R LR + + + ED
Sbjct: 187 RDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHRGMEDMRARLLRMIGDPHTRYREDP 246
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G + L I + +R+ E+ +L G A +S+ L
Sbjct: 247 VRMLRAVRFAAKTGFDIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQEL 306
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
R+ L + LLP L+Q G+ + N D+ V +P L +
Sbjct: 307 RKAGLHRGLLPLLDVALEQPMGE------RFVQLALDNTDERVKAGKPVSPGFLFASLLW 360
Query: 349 HQAL 352
H L
Sbjct: 361 HHVL 364
>gi|300703163|ref|YP_003744765.1| poly(a) polymerase i [Ralstonia solanacearum CFBP2957]
gi|299070826|emb|CBJ42123.1| poly(A) polymerase I [Ralstonia solanacearum CFBP2957]
Length = 519
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 138/304 (45%), Gaps = 38/304 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+ A++VGG VRDLLL PKDFDV T A +Q++ F RS IIGRRF I
Sbjct: 73 VTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVQVLFRRSRIIGRRFQIVH 132
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------------------- 169
V G +IEVS+F + + V Q+P G
Sbjct: 133 VTFYGGREQEIIEVSTFRALV------DAVESEQVPAGKRVKRTELDHHTHAVDASGRVL 186
Query: 170 -DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
D + + ++ RDFT+N+++++P ++DY G+ D+R LR + + + ED
Sbjct: 187 RDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHRGMEDMRARLLRMIGDPHTRYREDP 246
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G + L I + +R+ E+ +L G A +S+ L
Sbjct: 247 VRMLRAVRFAAKTGFGIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQEL 306
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
R+ L + LLP L+Q G+ + N D+ V +P L +
Sbjct: 307 RKAGLHRGLLPLLDVALEQPMGE------RFVQLALDNTDERVKAGKPVSPGFLFASLLW 360
Query: 349 HQAL 352
H L
Sbjct: 361 HHVL 364
>gi|262393336|ref|YP_003285190.1| poly(A) polymerase [Vibrio sp. Ex25]
gi|262336930|gb|ACY50725.1| poly(A) polymerase [Vibrio sp. Ex25]
Length = 453
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 129/262 (49%), Gaps = 17/262 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F
Sbjct: 29 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEQKNKSISQQSKEGMLLRDNVYGTIDED 146
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINS++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 147 AER------RDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLR 200
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L +D + ++ + + +R+ E +L G + LLR YNL
Sbjct: 201 AVRFAVKLDFDIEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNL 260
Query: 294 LKILLPFHAAYLDQQAGKITAE 315
+ L P AA+ + T +
Sbjct: 261 FQQLFPTIAAHFTEDYSSYTEQ 282
>gi|254468684|ref|ZP_05082090.1| poly(A) polymerase [beta proteobacterium KB13]
gi|207087494|gb|EDZ64777.1| poly(A) polymerase [beta proteobacterium KB13]
Length = 397
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 128/253 (50%), Gaps = 18/253 (7%)
Query: 71 PSWV--VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGR 128
PS+V V++ L+ FQAY+VGGC+RDLLL PKDFD+ T A+ Q+ F S IIGR
Sbjct: 22 PSYVLEVIRKLQQYDFQAYMVGGCIRDLLLNIQPKDFDIATNAHPDQVTAIFKNSRIIGR 81
Query: 129 RFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTIN 188
RF I V I +IEVS+F ++ +G E D R RDFT+N
Sbjct: 82 RFKIVHVRIDRQIIEVSTFRKKPSEVNKLRNGVVQDNAFGTIEEDAQR------RDFTMN 135
Query: 189 SLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL----GLS 244
++F+DP N ++D NG D+ + + ED R+LR +R A+L GL+
Sbjct: 136 AIFYDPLNNHLFDPFNGKKDIENRNINFIGNPEQRINEDPVRLLRAIRFHAKLEFNQGLT 195
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
+ ++ + SRI E+ G A+ SI +L++Y LL + PF + +
Sbjct: 196 LGN-----IKKFIPLLDNIPYSRIFDEMMKFFLTGHAKKSIFVLKKYQLLDLFFPFLSNH 250
Query: 305 -LDQQAGKITAEN 316
LD+ + I N
Sbjct: 251 SLDKNSLLIHGMN 263
>gi|255311216|ref|ZP_05353786.1| polyA polymerase [Chlamydia trachomatis 6276]
gi|255317518|ref|ZP_05358764.1| polyA polymerase [Chlamydia trachomatis 6276s]
gi|440525329|emb|CCP50580.1| poly(A) polymerase I [Chlamydia trachomatis K/SotonK1]
gi|440533363|emb|CCP58873.1| poly(A) polymerase I [Chlamydia trachomatis Ia/SotonIa1]
gi|440534257|emb|CCP59767.1| poly(A) polymerase I [Chlamydia trachomatis Ia/SotonIa3]
Length = 425
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 132/232 (56%), Gaps = 17/232 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK G++AY+VGGC+RDLLL+ PKDFD+ T+A ++++ F ++G+RF +
Sbjct: 49 VVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAH 108
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEV++F + G +E L+++ +G E D++R RDFTIN LF+D
Sbjct: 109 IRFPNQIIEVATF----RSGSNEEDSLITKDNLWGSAEEDVLR------RDFTINGLFYD 158
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+ DL+ LRT+ +L F +D R+LR L+I +R F D T +
Sbjct: 159 PSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA--FTVDPKT-L 215
Query: 254 HSLSSSIERLDKS---RIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
+L S L KS R+ E+ +LS G + L + +L+IL P+ A
Sbjct: 216 EALQESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMA 267
>gi|326423862|ref|NP_760535.2| poly(A) polymerase [Vibrio vulnificus CMCP6]
gi|319999234|gb|AAO10062.2| Poly(A) polymerase [Vibrio vulnificus CMCP6]
Length = 453
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 128/251 (50%), Gaps = 12/251 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF AYLVGG VRDLLL + PKDFD+ T A +Q+++ F
Sbjct: 29 ISRKQISDHALKVLYRLHGAGFDAYLVGGGVRDLLLGQSPKDFDIATNATPEQLKQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG------EGKETVLLSQIPYGCDEIDLVR 176
+IGRRF + + +IEV++F + + KE +LL YG + D R
Sbjct: 89 CRLIGRRFRLAHIMFGREIIEVATFRGHHQDANSQISQQSKEGMLLRDNVYGTIDEDAER 148
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFTIN+++++ I+DYA G+ DL +R + + ED R+LR +R
Sbjct: 149 ------RDFTINAMYYNIADYSIHDYAGGVEDLEDRLVRLIGDPETRYREDPVRMLRAIR 202
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
AA+L +D + ++ + + +R+ E +L G + L+R YNL +
Sbjct: 203 FAAKLDFDIEEDTAAPIEEMAYLLRDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 262
Query: 297 LLPFHAAYLDQ 307
+ P +AY +
Sbjct: 263 MFPAISAYFTE 273
>gi|15605135|ref|NP_219920.1| polyA polymerase [Chlamydia trachomatis D/UW-3/CX]
gi|385239926|ref|YP_005807768.1| polyA polymerase [Chlamydia trachomatis G/9768]
gi|385240850|ref|YP_005808691.1| polyA polymerase [Chlamydia trachomatis G/11222]
gi|385242704|ref|YP_005810543.1| polyA polymerase [Chlamydia trachomatis G/9301]
gi|385243617|ref|YP_005811463.1| Poly(A) polymerase [Chlamydia trachomatis D-EC]
gi|385244497|ref|YP_005812341.1| Poly(A) polymerase [Chlamydia trachomatis D-LC]
gi|385246313|ref|YP_005815135.1| polyA polymerase [Chlamydia trachomatis G/11074]
gi|3328838|gb|AAC68007.1| PolyA Polymerase [Chlamydia trachomatis D/UW-3/CX]
gi|296435931|gb|ADH18105.1| polyA polymerase [Chlamydia trachomatis G/9768]
gi|296436858|gb|ADH19028.1| polyA polymerase [Chlamydia trachomatis G/11222]
gi|296437792|gb|ADH19953.1| polyA polymerase [Chlamydia trachomatis G/11074]
gi|297140292|gb|ADH97050.1| polyA polymerase [Chlamydia trachomatis G/9301]
gi|297748540|gb|ADI51086.1| Poly(A) polymerase [Chlamydia trachomatis D-EC]
gi|297749420|gb|ADI52098.1| Poly(A) polymerase [Chlamydia trachomatis D-LC]
gi|440528006|emb|CCP53490.1| poly(A) polymerase I [Chlamydia trachomatis D/SotonD5]
gi|440528896|emb|CCP54380.1| poly(A) polymerase I [Chlamydia trachomatis D/SotonD6]
gi|440532470|emb|CCP57980.1| poly(A) polymerase I [Chlamydia trachomatis G/SotonG1]
Length = 425
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 132/232 (56%), Gaps = 17/232 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK G++AY+VGGC+RDLLL+ PKDFD+ T+A ++++ F ++G+RF +
Sbjct: 49 VVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAH 108
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEV++F + G +E L+++ +G E D++R RDFTIN LF+D
Sbjct: 109 IRFPNQIIEVATF----RSGSNEEDSLITKDNLWGSAEEDVLR------RDFTINGLFYD 158
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+ DL+ LRT+ +L F +D R+LR L+I +R F D T +
Sbjct: 159 PSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYA--FTVDPKT-L 215
Query: 254 HSLSSSIERLDKS---RIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
+L S L KS R+ E+ +LS G + L + +L+IL P+ A
Sbjct: 216 EALQESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMA 267
>gi|423111418|ref|ZP_17099112.1| Poly(A) polymerase [Klebsiella oxytoca 10-5243]
gi|423112563|ref|ZP_17100254.1| Poly(A) polymerase [Klebsiella oxytoca 10-5245]
gi|376376617|gb|EHS89394.1| Poly(A) polymerase [Klebsiella oxytoca 10-5243]
gi|376390940|gb|EHT03622.1| Poly(A) polymerase [Klebsiella oxytoca 10-5245]
Length = 454
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 154/318 (48%), Gaps = 33/318 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG T +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTTDRITSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGDPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+S ++ + L++ + + +R+ E+ +L G + LLR
Sbjct: 198 MLRAVRFAAKLGMSISEETAEPIPRLATLLHDVPPARLFEEVLKLLQAGDGYQTYILLRE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
YNL + L P Y ++ ++PM ++ ++ N D + D PA W
Sbjct: 258 YNLFQPLFPTITRYFTER-----GDSPMERIISQVLKNTDNRIRNDMRVNPAFLFAVMFW 312
Query: 343 VGLLSFHQALVSDPQDAF 360
LL Q + + A+
Sbjct: 313 YPLLETAQKIAQESGLAY 330
>gi|237802835|ref|YP_002888029.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT]
gi|231274069|emb|CAX10863.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT]
Length = 425
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 133/232 (57%), Gaps = 17/232 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK G++AY+VGGC+RDLLL+ PKDFD+ T+A ++++ F ++G+RF +
Sbjct: 49 VVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAH 108
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEV++F + G +E L+++ +G E D++R RDFTIN LF+D
Sbjct: 109 IRFPNQIIEVATF----RSGSNEEDSLITKDNLWGSAEEDVLR------RDFTINGLFYD 158
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+ DL+ LRT+ +L F +D R+LR L+I +R +F D T +
Sbjct: 159 PSAGIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSR--YAFTVDPKT-L 215
Query: 254 HSLSSSIERLDKS---RIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
+L S L KS R+ E+ +LS G + L + +L+IL P+ A
Sbjct: 216 EALQESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMA 267
>gi|386332544|ref|YP_006028713.1| polynucleotide adenylyltransferase [Ralstonia solanacearum Po82]
gi|334194992|gb|AEG68177.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
Po82]
Length = 516
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 138/304 (45%), Gaps = 38/304 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+ A++VGG VRDLLL PKDFDV T A +Q++ F RS IIGRRF I
Sbjct: 73 VTSTLQEAGYDAFIVGGAVRDLLLSIKPKDFDVATNATPEQVQALFRRSRIIGRRFQIVH 132
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------------------- 169
V G +IEVS+F + + V Q+P G
Sbjct: 133 VTFYGGREQEIIEVSTFRALV------DAVESEQVPAGKRVKRTELDHHTHAVDASGRVL 186
Query: 170 -DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
D + + ++ RDFT+N+++++P ++DY +G+ D+R LR + + + ED
Sbjct: 187 RDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHHGMEDMRARLLRMIGDPHTRYREDP 246
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G + L I + +R+ E+ +L G A +S+ L
Sbjct: 247 VRMLRAVRFAAKTGFDIEPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQEL 306
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
R+ L LLP L+Q G+ + N D+ V +P L +
Sbjct: 307 RKAGLHSGLLPLLDVALEQPMGE------RFVQLALDNTDERVKAGKPVSPGFLFASLLW 360
Query: 349 HQAL 352
H L
Sbjct: 361 HHVL 364
>gi|429210140|ref|ZP_19201307.1| poly(A) polymerase [Pseudomonas sp. M1]
gi|428158914|gb|EKX05460.1| poly(A) polymerase [Pseudomonas sp. M1]
Length = 467
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 122/241 (50%), Gaps = 16/241 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+ L+ G+QAY+VGG VRD LL PKDFDV T+A +Q+R +F + +IGRRF +
Sbjct: 45 VVDRLQKAGYQAYIVGGGVRDQLLGIAPKDFDVATSATPEQVRAEFRNARVIGRRFKLVH 104
Query: 135 VHIKGSVIEVSSFET--VAKHGEGKETV--------LLSQIPYGCDEIDLVRWRNSIHRD 184
VH +IEV++F + GEG +L YG E D R RD
Sbjct: 105 VHFGREIIEVATFRAHHPQEEGEGDSNQASRNEAGRILRDNVYGTLEDDAQR------RD 158
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+L+FD +I DYA+G+ D+R +R + + ED R+LR +R AA+L
Sbjct: 159 FTINALYFDCSDERILDYAHGVHDIRNRLVRLIGDPEQRYLEDPVRMLRAVRFAAKLDFE 218
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304
K + L+ + + +R+ E+ + G E + LL Y L L P A
Sbjct: 219 IEKHSAAPIRKLAPLLREIPSARLFDEVLKLFLSGRGERTFELLLEYELFAPLFPASAKA 278
Query: 305 L 305
L
Sbjct: 279 L 279
>gi|399543615|ref|YP_006556923.1| poly(A) polymerase [Marinobacter sp. BSs20148]
gi|399158947|gb|AFP29510.1| Poly(A) polymerase [Marinobacter sp. BSs20148]
Length = 453
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 131/256 (51%), Gaps = 24/256 (9%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I +P+ VL L G++AYLVGG VRD+LL PKDFD+ T A +++ F
Sbjct: 36 VSRTAISEPAKKVLHRLNKAGYEAYLVGGGVRDILLSGQPKDFDIATDATPEEVHELFRN 95
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA-------------KHGEGKETVLLSQIPYGC 169
S +IGRRF I V VIEV++F A +HG+ LL YG
Sbjct: 96 SRLIGRRFRIVHVVFGREVIEVTTFRGNANPADDDDDDRKTSEHGQ-----LLRDNVYGN 150
Query: 170 DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCA 229
E D +R RDFTIN+L++ + D+ANGI DL ++R + + ED
Sbjct: 151 LEEDALR------RDFTINALYYCIRDFSVIDFANGIDDLNNRQMRLIGDPETRYREDPV 204
Query: 230 RILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
R+LR +R AA+L + + + L+ + + +R+ E+ + S G E++ LR
Sbjct: 205 RMLRAIRFAAKLDFAIEPATEAPIRELAPLLTHIPAARLFDEVLKLFSAGYGEATFDKLR 264
Query: 290 RYNLLKILLPFHAAYL 305
Y+LL L P A+ L
Sbjct: 265 HYDLLAPLFPDTASAL 280
>gi|124268204|ref|YP_001022208.1| polynucleotide adenylyltransferase [Methylibium petroleiphilum PM1]
gi|124260979|gb|ABM95973.1| putative polynucleotide adenylyltransferase protein [Methylibium
petroleiphilum PM1]
Length = 535
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/319 (31%), Positives = 157/319 (49%), Gaps = 28/319 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A++ + V+ L G++AY+VGG VRD++L PKDFDV T A +Q++ F
Sbjct: 41 GIDPALVDDRALKVVATLHEAGYEAYIVGGAVRDMMLGLRPKDFDVATNATPEQVKGLFR 100
Query: 122 RSEIIGRRFPICRV-HIKG---SVIEVSSFET-----VAKHGEGKETVLLSQIPYGCDEI 172
R+ IIGRRF I V + +G VIEVS+F A+ G E +++ +
Sbjct: 101 RAFIIGRRFRIVHVVYGRGREHEVIEVSTFRAYLDAAAAEQVAGNEKTSKAELSGKSHVV 160
Query: 173 D----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D ++R W ++ RDFT+N+L++DP + DY GI+D + LR +
Sbjct: 161 DASGRVLRDNVWGPQHEDAARRDFTVNALYYDPQTQIVVDYHGGIADAKKRLLRMIGDPV 220
Query: 222 LSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAA 281
+ ED RI+R +R AA+LG M ++ +E + SR+ E+ +L G A
Sbjct: 221 TRYREDPVRIIRVVRFAAKLGFEIEPKTRAPMRDCAALLEAVPISRLFDEMIKLLQTGHA 280
Query: 282 ESSICLLRRYNLLKI------LLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
+SI LR+ LL + P A L AG+ A + L + D+ V D+
Sbjct: 281 LASIAQLRKQGLLGAGPDAPGIFPLLDAVL-ADAGRNPARAAFIDAAL-ADTDRRVGEDK 338
Query: 336 PADYTLWVGLLSFHQALVS 354
P + + L +H+ LV
Sbjct: 339 PVAPSFLLACLLWHEVLVG 357
>gi|269966964|ref|ZP_06181036.1| Poly(A) polymerase [Vibrio alginolyticus 40B]
gi|269828447|gb|EEZ82709.1| Poly(A) polymerase [Vibrio alginolyticus 40B]
Length = 455
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 126/252 (50%), Gaps = 17/252 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F
Sbjct: 31 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEQKNKSISQQSKEGMLLRDNVYGTIDED 148
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINS++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 149 AER------RDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLR 202
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L +D + ++ + + +R+ E +L G + LLR YNL
Sbjct: 203 AVRFAVKLDFDIEEDTAAPIEHMAPLLGDIPSARLFEESLKLLQSGHGLETYHLLREYNL 262
Query: 294 LKILLPFHAAYL 305
+ L P AA+
Sbjct: 263 FQQLFPTIAAHF 274
>gi|237653425|ref|YP_002889739.1| poly(A) polymerase [Thauera sp. MZ1T]
gi|237624672|gb|ACR01362.1| poly(A) polymerase [Thauera sp. MZ1T]
Length = 456
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 13/233 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + V +L+ +GF+A++VGG VRDLL+ PKD+DV T+A +++R F
Sbjct: 30 GIRREQLSPAARKVCAVLQEKGFKAFVVGGAVRDLLIGHPPKDYDVATSATPEEVRAAFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----VLLSQIPYGCDEIDLVR 176
RS IIGRRF I V IEVS+F ++ E +T VL + +G + D R
Sbjct: 90 RSRIIGRRFKIVHVMSGPETIEVSTFRA-SQDAESADTDEHGRVLRDNV-FGNQQEDATR 147
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFT+N+L++DP I DY +G++D++ LR + + ED R+LR +R
Sbjct: 148 ------RDFTVNALYYDPGTETIVDYHHGVADIQQKTLRMIGDPRTRYREDPVRMLRAVR 201
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
+AA+LGL+ + + +E + +R+ E+ +L G + + LR
Sbjct: 202 LAAKLGLTIDPAARQPIREMGPLLENVPAARLFDEMLKLLFSGHSLKCLQQLR 254
>gi|261493336|ref|ZP_05989862.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261496601|ref|ZP_05992981.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261307804|gb|EEY09127.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261310980|gb|EEY12157.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 443
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 135/259 (52%), Gaps = 14/259 (5%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
V++ I+ P+ + ++ L+ G++AY+VGGC+RDLLL + PKDFD+ T A +
Sbjct: 7 AVNASQYRISPKDFPKNAISIVDKLQIAGYEAYIVGGCIRDLLLEKKPKDFDIATNARPE 66
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSFETVAK-HGEGK------ETVLLSQIP 166
+I+R F R +IGRRF + + + EV++F + H K E +LL
Sbjct: 67 EIQRIFGRQCRLIGRRFRLAHIVYGREIFEVATFRAGHESHRNDKISKVSDEGMLLRDNV 126
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG D R RDFT+N+L++D N I+D+ NGI DLR KL + + + E
Sbjct: 127 YGTLRDDAER------RDFTVNALYYDIKRNLIFDFFNGIEDLRAGKLSLIGEPAIRYQE 180
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR +R A+L + K + + +++ + + +R+ E +L GA +
Sbjct: 181 DPVRMLRAVRFMAKLDMFLDKATASPIRDMAALLTNIPAARLFDESLKLLQTGAGLKTYQ 240
Query: 287 LLRRYNLLKILLPFHAAYL 305
LLR Y L + L P A+
Sbjct: 241 LLREYELWQFLFPVLPAFF 259
>gi|198283568|ref|YP_002219889.1| poly(A) polymerase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|198248089|gb|ACH83682.1| poly(A) polymerase [Acidithiobacillus ferrooxidans ATCC 53993]
Length = 497
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 137/281 (48%), Gaps = 13/281 (4%)
Query: 33 PQMCREMCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGC 92
P EM + + + + ++R I + VL L GFQAYLVGG
Sbjct: 15 PDSAVEMAAAPSSLSSGIPGARVTPRSQHNVSRLQISDSALQVLNGLHRAGFQAYLVGGS 74
Query: 93 VRDLLLRRVPKDFDVITTANLKQIRRQFHR-SEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL R PKDFDV T A+ +Q+R+ F R + +IGRRF + V +IEV++F A
Sbjct: 75 VRDLLLGREPKDFDVATDAHPEQVRKLFRRNARLIGRRFILVHVQFGNEIIEVATFRGSA 134
Query: 152 KHGEGKET------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANG 205
E + + +L+ YG E D R RDFT N+L+++ I D++ G
Sbjct: 135 NGKEDESSEHSETGRILADNVYGSLEEDARR------RDFTANALYYNIADRSILDFSTG 188
Query: 206 ISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDK 265
+ DL+ +LR + + ED R+LR +R AA+LG + + + ++ +
Sbjct: 189 MEDLQAGRLRVIGDPEQRYREDPVRMLRAVRFAAKLGFTLDAAAQAPIAACRKLLQEVPS 248
Query: 266 SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLD 306
+R+ E + G A++S LR+ L L P A LD
Sbjct: 249 ARLFEETLKLFLTGNAQTSFEHLRQMGLFAALFPQVDALLD 289
>gi|340362383|ref|ZP_08684770.1| poly(A) polymerase [Neisseria macacae ATCC 33926]
gi|419796404|ref|ZP_14321948.1| poly(A) polymerase [Neisseria sicca VK64]
gi|339887488|gb|EGQ77040.1| poly(A) polymerase [Neisseria macacae ATCC 33926]
gi|385699530|gb|EIG29823.1| poly(A) polymerase [Neisseria sicca VK64]
Length = 456
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 9/222 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ L +GFQAY+VGG VRDLLL PKDFD+ T A +Q+ + F RS IIGRRF I
Sbjct: 44 VVRRLHDEGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQVHKIFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V + IEV++F K + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMVGPETIEVTTFRGGGKVQQNAHGRIMKDNTYGSMEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ +G+ D+ KL + A + ED RILR +R++ +LG ++ +
Sbjct: 158 IKEEIIDFHHGVGDIADRKLVMIGNAAERYQEDPVRILRAVRLSGKLGFDVEENTAAPIP 217
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
+ ++ +R+ E+ +L G A C L+R N L +
Sbjct: 218 EQAGRLKHEPVARLFDEIMKLLFSGYARE--C-LKRLNSLGV 256
>gi|344200162|ref|YP_004784488.1| poly(A) polymerase [Acidithiobacillus ferrivorans SS3]
gi|343775606|gb|AEM48162.1| poly(A) polymerase [Acidithiobacillus ferrivorans SS3]
Length = 498
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + + VL L GFQAYLVGG VRDLLL R PKDFDV T A+ +Q+R+ F R
Sbjct: 45 VSRRQISEGALQVLNGLHRAGFQAYLVGGSVRDLLLGREPKDFDVATDAHPEQVRKLFRR 104
Query: 123 -SEIIGRRFPICRVHIKGSVIEVSSFETVA--KHGEGKETV----LLSQIPYGCDEIDLV 175
+ +IGRRF + V +IEV++F A K E E +L+ YG E D
Sbjct: 105 NARLIGRRFILVHVQFGHEIIEVATFRGSANGKENEASERSETGRILADNVYGSLEEDAR 164
Query: 176 RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGL 235
R RDFT N+L+++ I D++ G+ DL+ +LR + + ED R+LR +
Sbjct: 165 R------RDFTANALYYNIADRSILDFSTGMEDLQAGRLRVIGDPEQRYREDPVRMLRAV 218
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R AA+LG + + ++ + +R+ E + G A++S LR+ L
Sbjct: 219 RFAAKLGFIMDAAAQAPIATCRERLQEVPSARLFEETLKLFLNGNAQTSFEHLRQQGLFA 278
Query: 296 ILLP 299
L P
Sbjct: 279 ALFP 282
>gi|409396325|ref|ZP_11247328.1| poly(A) polymerase [Pseudomonas sp. Chol1]
gi|419954451|ref|ZP_14470589.1| poly(A) polymerase [Pseudomonas stutzeri TS44]
gi|387968784|gb|EIK53071.1| poly(A) polymerase [Pseudomonas stutzeri TS44]
gi|409119102|gb|EKM95489.1| poly(A) polymerase [Pseudomonas sp. Chol1]
Length = 461
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 138/263 (52%), Gaps = 17/263 (6%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+ SR + R I + + V++ L+ G++AY+VGGCVRDLLL PKD+DV T+A +Q
Sbjct: 26 LSSRQHSLQRNAISRNAVNVVQRLQQAGYEAYVVGGCVRDLLLDLDPKDYDVATSATPEQ 85
Query: 116 IRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF---------ETVAKH--GEGKETVLLSQ 164
+R +F + +IGRRF + VH +IEV++F E A H + +L
Sbjct: 86 VRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPEEDDEEEASHLAARNESGRILRD 145
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
YG + D R RDFTIN+L++DP +I D+ +G+ D+R +R + +
Sbjct: 146 NVYGTLDDDAQR------RDFTINALYYDPTSERILDHTHGVHDIRNRLIRLIGDPEQRY 199
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R AA+L + + L+ ++ + +R+ E + G AE +
Sbjct: 200 QEDPVRMLRAVRFAAKLDFEIERHSAEPIAELADLLDGIPSARLFDETLKLFLGGKAERT 259
Query: 285 ICLLRRYNLLKILLPFHAAYLDQ 307
LL Y+L L P AA L++
Sbjct: 260 FELLLEYDLFAPLFPASAAALER 282
>gi|339626084|ref|YP_004717563.1| poly(A) polymerase family protein [Chlamydia trachomatis L2c]
gi|339460742|gb|AEJ77245.1| poly(A) polymerase family protein [Chlamydia trachomatis L2c]
Length = 424
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 11/229 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK G++AY+VGGC+RDLLL+ PKDFD+ T+A ++++ F ++G+RF +
Sbjct: 48 VVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAH 107
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEV++F + G +E L+++ +G E D++R RDFTIN LF+D
Sbjct: 108 IRFPNQIIEVATF----RSGSNEEDSLITKDNLWGSAEEDVLR------RDFTINGLFYD 157
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+ DL+ LRT+ +L F +D R+LR L+I +R + A+
Sbjct: 158 PSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEAL 217
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
+ + + R+ E+ +LS G + L + +L+IL P+ A
Sbjct: 218 QESRHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMA 266
>gi|349609232|ref|ZP_08888635.1| hypothetical protein HMPREF1028_00610 [Neisseria sp. GT4A_CT1]
gi|348612739|gb|EGY62352.1| hypothetical protein HMPREF1028_00610 [Neisseria sp. GT4A_CT1]
Length = 456
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 9/222 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ L +GFQAY+VGG VRDLLL PKDFD+ T A +Q+ + F RS IIGRRF I
Sbjct: 44 VVRRLHDEGFQAYVVGGAVRDLLLGVEPKDFDIATDATPEQVHKIFRRSRIIGRRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V + IEV++F K + ++ YG E D +R RDFT N+L++DP
Sbjct: 104 VMVGPETIEVTTFRGGGKVQQNAHGRIMKDNTYGSMEEDAMR------RDFTCNALYYDP 157
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ +G+ D+ KL + A + ED RILR +R++ +LG ++ +
Sbjct: 158 IKEEIIDFHHGVGDIADRKLVMIGNAAERYQEDPVRILRAVRLSGKLGFDVEENTAAPIP 217
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
+ ++ +R+ E+ +L G A C L+R N L +
Sbjct: 218 EQAGRLKHEPVARLFDEIMKLLFSGYARE--C-LKRLNSLGV 256
>gi|255348775|ref|ZP_05380782.1| polyA polymerase [Chlamydia trachomatis 70]
gi|255503315|ref|ZP_05381705.1| polyA polymerase [Chlamydia trachomatis 70s]
gi|255506994|ref|ZP_05382633.1| polyA polymerase [Chlamydia trachomatis D(s)2923]
gi|385241781|ref|YP_005809621.1| polyA polymerase [Chlamydia trachomatis E/11023]
gi|385245388|ref|YP_005814211.1| polyA polymerase [Chlamydia trachomatis E/150]
gi|386262764|ref|YP_005816043.1| polyA polymerase [Chlamydia trachomatis Sweden2]
gi|389858103|ref|YP_006360345.1| polyA polymerase [Chlamydia trachomatis F/SW4]
gi|389858979|ref|YP_006361220.1| polyA polymerase [Chlamydia trachomatis E/SW3]
gi|389859855|ref|YP_006362095.1| polyA polymerase [Chlamydia trachomatis F/SW5]
gi|289525452|emb|CBJ14929.1| polyA polymerase [Chlamydia trachomatis Sweden2]
gi|296435004|gb|ADH17182.1| polyA polymerase [Chlamydia trachomatis E/150]
gi|296438724|gb|ADH20877.1| polyA polymerase [Chlamydia trachomatis E/11023]
gi|380249175|emb|CCE14467.1| polyA polymerase [Chlamydia trachomatis F/SW5]
gi|380250050|emb|CCE13578.1| polyA polymerase [Chlamydia trachomatis F/SW4]
gi|380250928|emb|CCE12689.1| polyA polymerase [Chlamydia trachomatis E/SW3]
gi|440527114|emb|CCP52598.1| poly(A) polymerase I [Chlamydia trachomatis D/SotonD1]
gi|440529788|emb|CCP55272.1| poly(A) polymerase I [Chlamydia trachomatis E/SotonE4]
gi|440530687|emb|CCP56171.1| poly(A) polymerase I [Chlamydia trachomatis E/SotonE8]
gi|440531578|emb|CCP57088.1| poly(A) polymerase I [Chlamydia trachomatis F/SotonF3]
gi|440535155|emb|CCP60665.1| poly(A) polymerase I [Chlamydia trachomatis E/Bour]
Length = 425
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 11/229 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK G++AY+VGGC+RDLLL+ PKDFD+ T+A ++++ F ++G+RF +
Sbjct: 49 VVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAH 108
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEV++F + G +E L+++ +G E D++R RDFTIN LF+D
Sbjct: 109 IRFPNQIIEVATF----RSGSNEEDSLITKDNLWGSAEEDVLR------RDFTINGLFYD 158
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+ DL+ LRT+ +L F +D R+LR L+I +R + A+
Sbjct: 159 PSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEAL 218
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
+ + + R+ E+ +LS G + L + +L+IL P+ A
Sbjct: 219 QESRHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMA 267
>gi|334123400|ref|ZP_08497425.1| polyA polymerase family protein [Enterobacter hormaechei ATCC
49162]
gi|333390609|gb|EGK61741.1| polyA polymerase family protein [Enterobacter hormaechei ATCC
49162]
Length = 454
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 128/255 (50%), Gaps = 14/255 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 28 ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRN 87
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG--------EGKETVLLSQIPYGCDEIDL 174
++GRRF + V +IEV++F + G G+ +LL +G E D
Sbjct: 88 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGVNDRTTSQRGQNGMLLRDNIFGSIEEDA 147
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++ + DY G+ DL+ +R + + ED R+LR
Sbjct: 148 QR------RDFTINSLYYSVADFTVRDYVGGMQDLKDGLIRLIGTPETRYREDPVRMLRA 201
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L + + + L++ I + +R+ E +L G + LLR YNL
Sbjct: 202 VRFAAKLNMRISPETAEPIPRLATLINDVPPARLFEESLKLLQAGYGFETYNLLREYNLF 261
Query: 295 KILLPFHAAYLDQQA 309
+ L P Y +
Sbjct: 262 QPLFPTITRYFTENG 276
>gi|326796836|ref|YP_004314656.1| poly(A) polymerase [Marinomonas mediterranea MMB-1]
gi|326547600|gb|ADZ92820.1| poly(A) polymerase [Marinomonas mediterranea MMB-1]
Length = 479
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 123/251 (49%), Gaps = 25/251 (9%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL L GF AYLVGGC+RD L+ PKDFDV+T A +++ F S +IGRRF I
Sbjct: 47 VLHRLNGAGFDAYLVGGCIRDHLIGMSPKDFDVVTNATPEEVNDLFSNSRLIGRRFRIVH 106
Query: 135 VHIKGSVIEVSSFET--------VAKHGEGK-----------ETVLLSQIPYGCDEIDLV 175
V +IEVS+F + KH E K ++L +G + D
Sbjct: 107 VTFGREIIEVSTFRANTANNPPPIPKHDENKSLKNKDTARSSHGIILRDNVWGSIDEDAQ 166
Query: 176 RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGL 235
R RDFT N+L+F+ I+D+ NG+ D+ ++R + + ED R+LR +
Sbjct: 167 R------RDFTFNALYFNIADRSIHDFCNGLQDIENKQIRIIGDPRERYKEDPVRMLRAI 220
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R A +LG + + ++ ++ + +R+ E+ +L G ++ LLR Y L K
Sbjct: 221 RFAGKLGFDIEPETAAPIKEMAHLLDHIPPARLFEEVLKLLGSGQGVTTFYLLREYGLFK 280
Query: 296 ILLPFHAAYLD 306
L P A L+
Sbjct: 281 YLFPDTDAILN 291
>gi|419956603|ref|ZP_14472670.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae GS1]
gi|388608360|gb|EIM37563.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae GS1]
Length = 447
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 128/255 (50%), Gaps = 14/255 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 21 ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG--------EGKETVLLSQIPYGCDEIDL 174
++GRRF + V +IEV++F + G G+ +LL +G E D
Sbjct: 81 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGVNDRTTSQRGQNGMLLRDNIFGSIEEDA 140
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++ + DY G+ DL+ +R + + ED R+LR
Sbjct: 141 QR------RDFTINSLYYSVADFTVRDYVGGMQDLKDGLIRLIGTPETRYREDPVRMLRA 194
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L + + + L++ I + +R+ E +L G + LLR YNL
Sbjct: 195 VRFAAKLNMRISPETAEPIPRLATLINDVPPARLFEESLKLLQAGYGFETYNLLREYNLF 254
Query: 295 KILLPFHAAYLDQQA 309
+ L P Y +
Sbjct: 255 QPLFPTITRYFTENG 269
>gi|319941727|ref|ZP_08016049.1| Poly(A) polymerase [Sutterella wadsworthensis 3_1_45B]
gi|319804660|gb|EFW01527.1| Poly(A) polymerase [Sutterella wadsworthensis 3_1_45B]
Length = 484
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 8/223 (3%)
Query: 79 LKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIK 138
L+ +G++AY+VGG VRDLLL PKDFDV T A ++++R R+ IIGRRF + V
Sbjct: 51 LQRRGYRAYIVGGAVRDLLLGVAPKDFDVATDATPEEVKRAQKRAIIIGRRFRLVHVIFG 110
Query: 139 GSVIEVSSFETVAKHGEGKETV--LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFL 196
+IE S+F + G K++ ++S +G E+ W ++ RDFTIN+L++DP
Sbjct: 111 QEIIECSTFRALEGAGVRKDSSGRVISDNVFG--EM----WEDAARRDFTINALYYDPAT 164
Query: 197 NKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSL 256
+IYDY +G DL +LR + + ED R++R +RI+A+LG + + + +
Sbjct: 165 EEIYDYHHGFEDLGKKRLRMIGNPEERYREDPVRMIRAVRISAKLGFAIEPATERPIARM 224
Query: 257 SSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ + + +R++ E +L+ G A + LR+ L + +LP
Sbjct: 225 AKLLSNVPSARLVDEALKLLTCGHAVECVSRLRKEGLAEAVLP 267
>gi|430762078|ref|YP_007217935.1| Poly(A) polymerase [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011702|gb|AGA34454.1| Poly(A) polymerase [Thioalkalivibrio nitratireducens DSM 14787]
Length = 434
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 128/247 (51%), Gaps = 17/247 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+RA I + VL L+ GF++ LVGG VRDLLL R PKDFDV T A+ +RR F
Sbjct: 9 ISRAAISDNALKVLYRLRDAGFRSCLVGGGVRDLLLGREPKDFDVATDAHPDDVRRLFRN 68
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEIDL 174
+IGRRF + V +IEV++F GE ++ +L YG E D
Sbjct: 69 CRLIGRRFRLAHVTFGREIIEVATFRAPIGAGEEDDGNVELSEDGRILRDNCYGTIEQDA 128
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLR--CLKLRTLIPAYLSFTEDCARIL 232
WR RDFT+N+L++D + D+ NG+ DL L+L P ED R+L
Sbjct: 129 --WR----RDFTVNALYYDIADYSVLDFTNGVKDLHEGVLRLIGNDPEQ-RLREDPVRML 181
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R AA+LGL ++D A+H + + +R+ E+ + GAA + + L R+
Sbjct: 182 RAVRFAAKLGLRLASEVDEALHRHADLLTTAAPARLFDEVLKLFHSGAAVTCLDELERFG 241
Query: 293 LLKILLP 299
L ++ P
Sbjct: 242 LFAMMFP 248
>gi|381180877|ref|ZP_09889714.1| poly(A) polymerase [Treponema saccharophilum DSM 2985]
gi|380767233|gb|EIC01235.1| poly(A) polymerase [Treponema saccharophilum DSM 2985]
Length = 355
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 129/243 (53%), Gaps = 14/243 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I R I Q ++ +++ L+ GF AY+VGG VRDLL+ + PKDFD++T A +I+R F
Sbjct: 14 IPRERIDQDAYRIVEHLRGCGFDAYIVGGAVRDLLVGKSPKDFDIVTDATPSKIKRLFRN 73
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIH 182
S IIG+RF + V + EVS+F +VA G + +G + D+ R
Sbjct: 74 SRIIGKRFRLVHVFFGEKIFEVSTFRSVASGSVGND--------FGTMDEDVQR------ 119
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFT N+L++DP ++ DY G+ D+R LR +IP F +D R+LR ++ A+ LG
Sbjct: 120 RDFTANALYYDPIKEQVVDYVGGVEDIRKKVLRPVIPLEHIFEDDPVRMLRAIKYASSLG 179
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
+ + + + + + SR+ EL +++ G + + L +++ L P
Sbjct: 180 CRMPHSLRSRIRKSAHLLSAVSPSRLTEELMKIVNSGHSFEIVTLALEFDVFMYLQPSAC 239
Query: 303 AYL 305
A +
Sbjct: 240 AMM 242
>gi|336314060|ref|ZP_08568981.1| poly(A) polymerase [Rheinheimera sp. A13L]
gi|335881573|gb|EGM79451.1| poly(A) polymerase [Rheinheimera sp. A13L]
Length = 480
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 142/283 (50%), Gaps = 19/283 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + VL LK G++AYLVGGC+RD+LL PKDFDV+T A+ +Q+R+ F
Sbjct: 52 VSRKDISPNALKVLYRLKDAGYEAYLVGGCIRDILLGLKPKDFDVVTNAHPEQVRQVFKN 111
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF--------ETVAKHGEGKETVLLSQIPYGCDEIDL 174
+IGRRF + V VIEV++F ET K + +L YG E D
Sbjct: 112 CRLIGRRFRLAHVVFGREVIEVATFRGHHTGDDETSPKASQSDAGQILRDNVYGTIEEDA 171
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDF+IN+L++ IYD+ANGI + K+ + + ED R+LR
Sbjct: 172 ER------RDFSINALYYSVADFAIYDFANGIEAIAQRKIELIGDPETRYREDPVRMLRA 225
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + + L+ ++ + +R+ E + G A + +L +L
Sbjct: 226 VRFATKLNMEIAPGSKEPIKELAVLLKNIPAARLFEEFLKLFMAGKAFDNFLMLNDLGIL 285
Query: 295 KILLPFHAAYLDQ-QAGKITAENPMMLMRLFFNLDKLVSCDRP 336
K LLP A L Q +GK+ ++ + + D+ ++ D+P
Sbjct: 286 KQLLPQLAKVLKQDSSGKVFN----LITKAMQDTDQRIAIDKP 324
>gi|365969053|ref|YP_004950614.1| poly(A) polymerase [Enterobacter cloacae EcWSU1]
gi|365747966|gb|AEW72193.1| Poly(A) polymerase [Enterobacter cloacae EcWSU1]
Length = 454
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 127/245 (51%), Gaps = 14/245 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 28 ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRN 87
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEIDL 174
++GRRF + V +IEV++F + GE G+ +LL +G E D
Sbjct: 88 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGESDRTTSQRGQNGMLLRDNIFGSIEEDA 147
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++ + DY G+ DL+ +R + + ED R+LR
Sbjct: 148 QR------RDFTINSLYYSVADFTVRDYVGGMQDLKDGLIRLIGTPETRYREDPVRMLRA 201
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L + + + L++ I + +R+ E +L G + LLR Y+L
Sbjct: 202 VRFAAKLSMRISPETAEPIPRLATLINDVPPARLFEEALKLLQAGYGYETYKLLREYSLF 261
Query: 295 KILLP 299
+ L P
Sbjct: 262 QPLFP 266
>gi|166154621|ref|YP_001654739.1| polyA polymerase [Chlamydia trachomatis 434/Bu]
gi|166155496|ref|YP_001653751.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|301335888|ref|ZP_07224132.1| polyA polymerase [Chlamydia trachomatis L2tet1]
gi|165930609|emb|CAP04106.1| polyA polymerase [Chlamydia trachomatis 434/Bu]
gi|165931484|emb|CAP07060.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|440526216|emb|CCP51700.1| poly(A) polymerase I [Chlamydia trachomatis L2b/8200/07]
gi|440536041|emb|CCP61554.1| poly(A) polymerase I [Chlamydia trachomatis L2b/795]
gi|440536933|emb|CCP62447.1| poly(A) polymerase I [Chlamydia trachomatis L1/440/LN]
gi|440537823|emb|CCP63337.1| poly(A) polymerase I [Chlamydia trachomatis L1/1322/p2]
gi|440538713|emb|CCP64227.1| poly(A) polymerase I [Chlamydia trachomatis L1/115]
gi|440539602|emb|CCP65116.1| poly(A) polymerase I [Chlamydia trachomatis L1/224]
gi|440540493|emb|CCP66007.1| poly(A) polymerase I [Chlamydia trachomatis L2/25667R]
gi|440541382|emb|CCP66896.1| poly(A) polymerase I [Chlamydia trachomatis L3/404/LN]
gi|440542269|emb|CCP67783.1| poly(A) polymerase I [Chlamydia trachomatis L2b/UCH-2]
gi|440543160|emb|CCP68674.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Canada2]
gi|440544051|emb|CCP69565.1| poly(A) polymerase I [Chlamydia trachomatis L2b/LST]
gi|440544941|emb|CCP70455.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Ams1]
gi|440545831|emb|CCP71345.1| poly(A) polymerase I [Chlamydia trachomatis L2b/CV204]
gi|440914093|emb|CCP90510.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Ams2]
gi|440914983|emb|CCP91400.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Ams3]
gi|440915875|emb|CCP92292.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Canada1]
gi|440916769|emb|CCP93186.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Ams4]
gi|440917659|emb|CCP94076.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Ams5]
Length = 425
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 11/229 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK G++AY+VGGC+RDLLL+ PKDFD+ T+A ++++ F ++G+RF +
Sbjct: 49 VVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAH 108
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEV++F + G +E L+++ +G E D++R RDFTIN LF+D
Sbjct: 109 IRFPNQIIEVATF----RSGSNEEDSLITKDNLWGSAEEDVLR------RDFTINGLFYD 158
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+ DL+ LRT+ +L F +D R+LR L+I +R + A+
Sbjct: 159 PSAEIIIDYTGGVEDLKNRYLRTIGDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEAL 218
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
+ + + R+ E+ +LS G + L + +L+IL P+ A
Sbjct: 219 QESRHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMA 267
>gi|156975713|ref|YP_001446620.1| nucleotidyltransferase/poly(A) polymerase [Vibrio harveyi ATCC
BAA-1116]
gi|156527307|gb|ABU72393.1| hypothetical protein VIBHAR_03448 [Vibrio harveyi ATCC BAA-1116]
Length = 462
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 123/246 (50%), Gaps = 17/246 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F
Sbjct: 31 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEQKNKNVSQQSKEGMLLRDNVYGTIDED 148
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINS++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 149 AER------RDFTINSMYYNIADYSIHDYARGIEDLEDRLVRLIGDPETRYREDPVRMLR 202
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L +D + ++ + + +R+ E ML G + LLR YNL
Sbjct: 203 AIRFAVKLDFDIEEDTAAPIEEMAPLLRDIPSARLFEESLKMLQSGHGLETYHLLREYNL 262
Query: 294 LKILLP 299
+ L P
Sbjct: 263 FQQLFP 268
>gi|206561603|ref|YP_002232368.1| putative polynucleotide adenylyltransferase [Burkholderia
cenocepacia J2315]
gi|444359735|ref|ZP_21161031.1| poly(A) polymerase [Burkholderia cenocepacia BC7]
gi|444368029|ref|ZP_21167901.1| poly(A) polymerase [Burkholderia cenocepacia K56-2Valvano]
gi|198037645|emb|CAR53588.1| putative polynucleotide adenylyltransferase [Burkholderia
cenocepacia J2315]
gi|443601512|gb|ELT69652.1| poly(A) polymerase [Burkholderia cenocepacia BC7]
gi|443601732|gb|ELT69860.1| poly(A) polymerase [Burkholderia cenocepacia K56-2Valvano]
Length = 516
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 23/249 (9%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A+I + + V L+ GF+A++VGG VRDLLL PKDFDV T A +++R F
Sbjct: 62 GINPALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFR 121
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGC--DEID------ 173
R+ +IGRRF I V +IEVS+F + + ++ P DE+D
Sbjct: 122 RARLIGRRFQIVHVQFGQELIEVSTFRALV---DAPPEAATAEPPKRLKRDELDRRTHAV 178
Query: 174 -----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
++R W ++ RDFTIN++++DP + DY +G++D+R LR +
Sbjct: 179 DASGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPA 238
Query: 222 LSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAA 281
F ED R+LR +R AA+LG +H+L+ I + +R+ E+ +L G A
Sbjct: 239 TRFREDPVRMLRVVRFAAKLGFEIEPHTREPIHALADLINNVPAARLFDEMLKLLLSGHA 298
Query: 282 ESSICLLRR 290
+ + LR+
Sbjct: 299 LACLQRLRK 307
>gi|444426206|ref|ZP_21221629.1| poly(A) polymerase [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444240525|gb|ELU52064.1| poly(A) polymerase [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 441
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 123/246 (50%), Gaps = 17/246 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F
Sbjct: 17 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRN 76
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 77 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEQKNKNVSQQSKEGMLLRDNVYGTIDED 134
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINS++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 135 AER------RDFTINSMYYNIADYSIHDYARGIEDLEDRLVRLIGDPETRYREDPVRMLR 188
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L +D + ++ + + +R+ E ML G + LLR YNL
Sbjct: 189 AIRFAVKLDFDIEEDTAAPIEEMAPLLRDIPSARLFEESLKMLQSGHGLETYHLLREYNL 248
Query: 294 LKILLP 299
+ L P
Sbjct: 249 FQQLFP 254
>gi|388602361|ref|ZP_10160757.1| poly(A) polymerase [Vibrio campbellii DS40M4]
Length = 441
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 123/246 (50%), Gaps = 17/246 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F
Sbjct: 17 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRN 76
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 77 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEQKNKNVSQQSKEGMLLRDNVYGTIDED 134
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINS++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 135 AER------RDFTINSMYYNIADYSIHDYARGIEDLEDRLVRLIGDPETRYREDPVRMLR 188
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L +D + ++ + + +R+ E ML G + LLR YNL
Sbjct: 189 AIRFAVKLDFDIEEDTAAPIEEMAPLLRDIPSARLFEESLKMLQSGHGLETYHLLREYNL 248
Query: 294 LKILLP 299
+ L P
Sbjct: 249 FQQLFP 254
>gi|389701948|ref|ZP_10185346.1| poly(A) polymerase [Leptothrix ochracea L12]
gi|388591067|gb|EIM31339.1| poly(A) polymerase [Leptothrix ochracea L12]
Length = 567
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/264 (34%), Positives = 134/264 (50%), Gaps = 20/264 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I A+I + + V+ L+ GF+AY+VGG VRDLLL PKDFDV T A Q++ F R
Sbjct: 44 IDPALIDERATRVVSTLQEAGFEAYIVGGAVRDLLLGHRPKDFDVATNATPAQVKALFRR 103
Query: 123 SEIIGRRFPICRVHI----KGSVIEVSSFETVAKHGE-----GKETVLLSQIPYGCDEID 173
+ IIGRRF + V + VIEVS+F + + E G E +++ +D
Sbjct: 104 AFIIGRRFQLVHVVFGRGREHEVIEVSTFRALMEPAEVAPVRGNERTSKAELVGKSHAVD 163
Query: 174 ----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 222
++R W ++ RDFTIN+L++DP + DY +GI D LR +
Sbjct: 164 ASGRVLRDNVWGPQDEDAARRDFTINALYYDPARQVVIDYHHGIEDAAKRVLRMIGDPSA 223
Query: 223 SFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAE 282
F ED RI+R +R AA+LG M ++ + + SR+ E+ +L G A
Sbjct: 224 RFREDPVRIIRVVRFAAKLGFEIEPHTRAPMRKMADLLANVPASRVFDEMIKLLQTGHAL 283
Query: 283 SSICLLRRYNLLKILLPFHAAYLD 306
+S+ LR+ L + L P A LD
Sbjct: 284 ASLEELRKQGLHRGLFPILDAVLD 307
>gi|85711815|ref|ZP_01042871.1| Poly(A) polymerase [Idiomarina baltica OS145]
gi|85694430|gb|EAQ32372.1| Poly(A) polymerase [Idiomarina baltica OS145]
Length = 454
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 149/302 (49%), Gaps = 31/302 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L + GF+AYLVGGCVRDLLL PKDFDV T A +Q+++ F
Sbjct: 25 ISRKNISDNALKVLYRLHNSGFEAYLVGGCVRDLLLGIQPKDFDVTTNATPEQVKKLFRN 84
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIP---------------Y 167
++GRRF + + +IEV++F K + + + P Y
Sbjct: 85 CRLVGRRFRLAHIVFGKDIIEVATFRGHHKEDDSEAASQTRKQPTAKTDEQGFLVRDNVY 144
Query: 168 GCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
G E D R RDFT+N+++++ IYD+A G DL +R + A + ED
Sbjct: 145 GSIEEDAER------RDFTVNAMYYNIADFCIYDFAGGKKDLDAGVIRLIGDAEQRYRED 198
Query: 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
R+LR +R A +L + K + + ++S + + +R+ E M G A ++ +
Sbjct: 199 PVRMLRAIRFATKLNMQMDKHVQEPIVEMASLLRNIPPARLFDEFLKMFMAGKASANFEM 258
Query: 288 LRRYNLLKILLPFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDR---PADYTLWV 343
+ ++NL + + P YL D+Q+ I ++ R + DK V+ ++ PA Y L V
Sbjct: 259 MVQHNLFQQMFPVLKTYLKDEQSPAIA-----LIQRALSDTDKRVNNEQRVTPA-YLLAV 312
Query: 344 GL 345
L
Sbjct: 313 ML 314
>gi|350562441|ref|ZP_08931275.1| poly(A) polymerase [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349779383|gb|EGZ33729.1| poly(A) polymerase [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 438
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 128/247 (51%), Gaps = 17/247 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+RA I + VL L+ GF++ LVGG VRDLLL R PKDFDV T A+ + +RR F
Sbjct: 13 ISRAAISDNALKVLYRLRDAGFRSCLVGGGVRDLLLGREPKDFDVATDAHPEDVRRLFRN 72
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFET-VAKHGEGKETVLLSQIP-------YGCDEIDL 174
+IGRRF + V +IEV++F + E V LS+ YG E D
Sbjct: 73 CRLIGRRFRLAHVTFGREIIEVATFRAPIGAEEEDDGNVELSEDGRILRDNCYGTIEQDA 132
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLR--CLKLRTLIPAYLSFTEDCARIL 232
R RDFT+N+L++D + D+ NG+ DL L+L P ED R+L
Sbjct: 133 RR------RDFTVNALYYDIADYSVLDFTNGVKDLHEGVLRLIGNDPEQ-RLREDPVRML 185
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R AA+LGL ++D A+H S + +R+ E+ + GAA + + L R+
Sbjct: 186 RAVRFAAKLGLRLAPEVDDALHRHSDLLTTAAPARLFDEVLKLFHSGAAVTCLDELERFG 245
Query: 293 LLKILLP 299
L I+ P
Sbjct: 246 LFAIMFP 252
>gi|308050920|ref|YP_003914486.1| poly(A) polymerase [Ferrimonas balearica DSM 9799]
gi|307633110|gb|ADN77412.1| poly(A) polymerase [Ferrimonas balearica DSM 9799]
Length = 449
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 140/281 (49%), Gaps = 17/281 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL PKDFDV T A +QIR+ F
Sbjct: 29 ISRNDISENALKVLYRLHKAGYEAYLVGGGVRDLLLSHQPKDFDVATNATPEQIRKLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF-----ETVAKHGEGKETV-LLSQIPYGCDEIDLVR 176
++GRRF + + +IEV++ E+ KH ++ LL YG + D R
Sbjct: 89 CRLVGRRFRLAHILFGRDIIEVATLRGHHAESSDKHARADDSGRLLRDNVYGSIDEDAER 148
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFT+N L++D + DY G++DL+ +LR + + ED R+LR +R
Sbjct: 149 ------RDFTVNGLYYDIADYSVRDYFGGMADLKARRLRLIGDPETRYREDPVRMLRAVR 202
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A +L + + +L+ + + +R+ E + G A + L+R Y L
Sbjct: 203 FATKLDFTIDTQTGKPIPALAELLSDIPAARLFEESLKLFLAGKALDNFRLMREYGLFAP 262
Query: 297 LLPFHAAYLDQ-QAGKITAENPMMLMRLFFNLDKLVSCDRP 336
+ P L Q + GK+ A ++ + N D+ V+ D+P
Sbjct: 263 MFPMQEKLLQQDKDGKVLA----LIEAMMKNTDQRVAADKP 299
>gi|91794520|ref|YP_564171.1| poly(A) polymerase [Shewanella denitrificans OS217]
gi|91716522|gb|ABE56448.1| poly(A) polymerase [Shewanella denitrificans OS217]
Length = 449
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 140/282 (49%), Gaps = 19/282 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRD+LL PKDFDV+T A +I+ F
Sbjct: 13 ISRRQISENALKVLYRLNKSGYKAYLVGGGVRDILLGLEPKDFDVVTNATPDEIKALFRN 72
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEIDL 174
++GRRF + + VIEV++F HGE + + LL YG EID
Sbjct: 73 CRLVGRRFRLAHIVFGRDVIEVATFR--GHHGENSDNISKSNAEGRLLRDNVYG--EID- 127
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDFT+N+L++D I Y G+ DLR ++ + + ED R+LR
Sbjct: 128 ---EDAERRDFTVNALYYDISDYSIRSYGGGMDDLRNKSIKMIGDPETRYREDPVRMLRA 184
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + + L+S + + +R+ E+ + G AE++ L+ ++ L
Sbjct: 185 VRFATKLDMQIDPVTAAPITELASLLADIPAARMYEEVLKLFFAGKAEANFELMLKFGLF 244
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L P A LD+ TA +MR N D VS D+P
Sbjct: 245 APLFPQVQALLDESPKGDTARMVRAIMR---NTDLRVSQDKP 283
>gi|404378954|ref|ZP_10984030.1| poly(A) polymerase [Simonsiella muelleri ATCC 29453]
gi|404294890|gb|EFG30895.2| poly(A) polymerase [Simonsiella muelleri ATCC 29453]
Length = 436
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 123/227 (54%), Gaps = 10/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+K L +GF+AYLVGG VRD LL PKDFDV T A +Q+ + F RS IIGRRFPI
Sbjct: 37 VIKKLVKEGFEAYLVGGAVRDSLLGVAPKDFDVATNARPEQVEKLFRRSRIIGRRFPIVH 96
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V +EVS+F + K + ++ YG E D +R RDFT N+L++D
Sbjct: 97 VMSGKETVEVSTFRS-GKTRQNANGRIVKDNGYGTLEQDAMR------RDFTCNALYYDV 149
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+KI D+ +G++D+R KL + + ED RILR +R++ +L ++ +
Sbjct: 150 IRHKIIDFHDGMNDIRHKKLVMIGEPAERYQEDPVRILRAIRLSGKLNFQIDENTAEPIA 209
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
S + ++ SR+ EL +L G A+ CL + N L I P H
Sbjct: 210 SHAHLLQNEPVSRLFDELMKILFSGHAQG--CLQQLQN-LNINAPIH 253
>gi|344167481|emb|CCA79710.1| poly(A) polymerase I [blood disease bacterium R229]
Length = 515
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 137/304 (45%), Gaps = 38/304 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+ A++VGG VRDLLL PKDFDV T A +Q+ F RS IIGRRF I
Sbjct: 73 VTSTLQEAGYDAFIVGGAVRDLLLGIQPKDFDVATNATPEQVEALFRRSRIIGRRFQIVH 132
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------------------- 169
V G +IEVS+F + + V Q+P G
Sbjct: 133 VTFYGGREQEIIEVSTFRALV------DAVESEQVPAGKRVKRTELDHHTHAVDASGRVL 186
Query: 170 -DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
D + + ++ RDFT+N+++++P ++DY +G+ D+R LR + + + ED
Sbjct: 187 RDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHHGMEDMRARLLRMIGDPHTRYREDP 246
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G + L I + +R+ E+ +L G A +S+ L
Sbjct: 247 VRMLRVVRFAAKTGFDIDPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQEL 306
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
R+ L LLP L+Q G+ + N D+ V +P L +
Sbjct: 307 RKAGLHSGLLPLLDVALEQPMGQ------RFVQLALDNTDERVKAGKPVSPGFLFASLMW 360
Query: 349 HQAL 352
H L
Sbjct: 361 HHVL 364
>gi|17547346|ref|NP_520748.1| polynucleotide adenylyltransferase [Ralstonia solanacearum GMI1000]
gi|17429649|emb|CAD16334.1| probable polynucleotide adenylyltransferase protein [Ralstonia
solanacearum GMI1000]
Length = 514
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 137/304 (45%), Gaps = 38/304 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+ A++VGG VRDLLL PKDFDV T A +Q+ F RS IIGRRF I
Sbjct: 73 VTSTLQEAGYDAFIVGGAVRDLLLGIKPKDFDVATNATPEQVEALFRRSRIIGRRFQIVH 132
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------------------- 169
V G +IEVS+F + + V Q+P G
Sbjct: 133 VTFYGGREQEIIEVSTFRALV------DAVESEQVPAGKRVKRTELDHHTHAVDASGRVL 186
Query: 170 -DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
D + + ++ RDFT+N+++++P ++DY G+ D+R LR + + + ED
Sbjct: 187 RDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHRGMEDMRARLLRMIGDPHTRYREDP 246
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G + L I + +R+ E+ +L G A +S+ L
Sbjct: 247 VRMLRVVRFAAKTGFDIDPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQEL 306
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
R+ L + LLP L+Q G+ + N D+ V +P L +
Sbjct: 307 RKAGLHRGLLPLLDVALEQPMGQ------RFVQLALDNTDERVKAGKPVSPGFLFASLMW 360
Query: 349 HQAL 352
H L
Sbjct: 361 HHVL 364
>gi|167563975|ref|ZP_02356891.1| polyA polymerase [Burkholderia oklahomensis EO147]
gi|167571119|ref|ZP_02363993.1| polyA polymerase [Burkholderia oklahomensis C6786]
Length = 521
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 135/257 (52%), Gaps = 23/257 (8%)
Query: 55 TVDSRNL-GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
TV S N+ GI A+I + + V L+ GF+A++VGG VRDLLL PKDFDV T A
Sbjct: 61 TVVSANVHGIDPALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATP 120
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETV--AKHGEGKETVLLSQIPYGCDE 171
Q++ F R+ +IGRRF I V +IEVS+F + A ET ++ DE
Sbjct: 121 TQVQHLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQEPPAETAPAKRMKR--DE 178
Query: 172 ID-----------LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLK 213
+D ++R W ++ RDFTIN++++DP + DY +G++D+R
Sbjct: 179 LDRRTHAVDASGRVLRDNVWGEQHEDAARRDFTINAMYYDPATQTVLDYHDGMADMRARL 238
Query: 214 LRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELN 273
LR + F ED R+LR +R AA+LG ++ + L+ I + +R+ E+
Sbjct: 239 LRMIGDPVTRFREDPVRMLRVVRFAAKLGFEIEENTRAPIKELADLINNVPAARLFDEML 298
Query: 274 YMLSYGAAESSICLLRR 290
+L G A + + LR+
Sbjct: 299 KLLLSGHALACLRQLRK 315
>gi|300690555|ref|YP_003751550.1| poly(A) polymerase I [Ralstonia solanacearum PSI07]
gi|299077615|emb|CBJ50250.1| poly(A) polymerase I [Ralstonia solanacearum PSI07]
Length = 515
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 137/304 (45%), Gaps = 38/304 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+ A++VGG VRDLLL PKDFDV T A +Q+ F RS IIGRRF I
Sbjct: 73 VTSTLQEAGYDAFIVGGAVRDLLLGIQPKDFDVATNATPEQVEALFRRSRIIGRRFQIVH 132
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------------------- 169
V G +IEVS+F + + V Q+P G
Sbjct: 133 VTFYGGREQEIIEVSTFRALV------DAVESEQVPAGKRVKRTELDHHTHAVDASGRVL 186
Query: 170 -DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
D + + ++ RDFT+N+++++P ++DY +G+ D+R LR + + + ED
Sbjct: 187 RDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHHGMEDMRARLLRMIGDPHTRYREDP 246
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G + L I + +R+ E+ +L G A +S+ L
Sbjct: 247 VRMLRVVRFAAKTGFDIDPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQEL 306
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
R+ L LLP L+Q G+ + N D+ V +P L +
Sbjct: 307 RKAGLHSGLLPLLDVALEQPMGQ------RFVQLALDNTDERVKAGKPVSPGFLFASLMW 360
Query: 349 HQAL 352
H L
Sbjct: 361 HHVL 364
>gi|237804757|ref|YP_002888911.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT]
gi|376282416|ref|YP_005156242.1| polyA polymerase [Chlamydia trachomatis A2497]
gi|385270103|ref|YP_005813263.1| Poly(A) polymerase [Chlamydia trachomatis A2497]
gi|231273057|emb|CAX09970.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT]
gi|347975243|gb|AEP35264.1| Poly(A) polymerase [Chlamydia trachomatis A2497]
gi|371908446|emb|CAX09076.1| polyA polymerase [Chlamydia trachomatis A2497]
gi|438690340|emb|CCP49597.1| poly(A) polymerase I [Chlamydia trachomatis A/7249]
gi|438691424|emb|CCP48698.1| poly(A) polymerase I [Chlamydia trachomatis A/5291]
gi|438692797|emb|CCP47799.1| poly(A) polymerase I [Chlamydia trachomatis A/363]
Length = 425
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 132/232 (56%), Gaps = 17/232 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK G++AY+VGGC+RDLLL+ PKDFD+ T+A ++++ F ++G+RF +
Sbjct: 49 VVRTLKKAGYEAYIVGGCIRDLLLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAH 108
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-YGCDEIDLVRWRNSIHRDFTINSLFFD 193
+ +IEV++F + G +E L+++ +G E D++R RDFTIN LF+D
Sbjct: 109 IRFPNQIIEVATF----RSGSNEEDSLITKDNLWGSAEEDVLR------RDFTINGLFYD 158
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P I DY G+ DL+ L+T+ +L F +D R+LR L+I +R F D T +
Sbjct: 159 PSAEIIIDYTGGVEDLKNRYLKTIGDPFLRFKQDPVRMLRLLKILSRYA--FTVDPKT-L 215
Query: 254 HSLSSSIERLDKS---RIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
+L S L KS R+ E+ +LS G + L + +L+IL P+ A
Sbjct: 216 EALQESCHELVKSSQPRVFEEIIKVLSSGESTIFFQLASEHRVLEILFPYMA 267
>gi|254282332|ref|ZP_04957300.1| poly(A) polymerase [gamma proteobacterium NOR51-B]
gi|219678535|gb|EED34884.1| poly(A) polymerase [gamma proteobacterium NOR51-B]
Length = 432
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 128/254 (50%), Gaps = 23/254 (9%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+ ++ + + V+ LKS+G++AY+VGG VRDLLL PKDFDV T A +QI+ F
Sbjct: 11 ISPNLVSEAAVKVVSRLKSKGYEAYIVGGAVRDLLLGGQPKDFDVGTNATPEQIKAVFKN 70
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG----EGKET-------------VLLSQI 165
+ IIGRRF I V +IEV+++ G GK++ +LL
Sbjct: 71 ARIIGRRFQIVHVRFGPEIIEVTTYRGHHASGSAPASGKDSGNTKAHSRQSDKGLLLRDN 130
Query: 166 PYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFT 225
YG E D R RD TIN+L++DP + D NG++D+ +R + + +
Sbjct: 131 VYGTLEEDAAR------RDLTINALYYDPEDESVLDQLNGMADVEARLVRVIGEPHTRYR 184
Query: 226 EDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285
ED R+LR LR AA+L + D A+ + + + +R+ E + G A +
Sbjct: 185 EDPVRMLRVLRFAAKLQFDVESETDHAIAECAPLLAEIPSARLFDEFLKLFMAGYATPTF 244
Query: 286 CLLRRYNLLKILLP 299
LL RY LL L P
Sbjct: 245 KLLYRYGLLHHLFP 258
>gi|344172270|emb|CCA84902.1| poly(A) polymerase I [Ralstonia syzygii R24]
Length = 515
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/304 (29%), Positives = 137/304 (45%), Gaps = 38/304 (12%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ G+ A++VGG VRDLLL PKDFDV T A +Q+ F RS IIGRRF I
Sbjct: 73 VTSTLQEAGYDAFIVGGAVRDLLLGIQPKDFDVATNATPEQVEALFRRSRIIGRRFQIVH 132
Query: 135 VHIKGS----VIEVSSFETVAKHGEGKETVLLSQIPYGC--------------------- 169
V G +IEVS+F + + V Q+P G
Sbjct: 133 VTFYGGREQEIIEVSTFRALV------DAVESEQVPAGKRVKRTELDHHTHAVDASGRVL 186
Query: 170 -DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
D + + ++ RDFT+N+++++P ++DY +G+ D+R LR + + + ED
Sbjct: 187 RDNVWGTQAEDATRRDFTVNAMYYNPADQTVHDYHHGMEDMRARLLRMIGDPHTRYREDP 246
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R AA+ G + L I + +R+ E+ +L G A +S+ L
Sbjct: 247 VRMLRVVRFAAKTGFDIDPATRAPIAELGPLIHNVPAARLFDEMLKLLMSGHAWASLQEL 306
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
R+ L LLP L+Q G+ + N D+ V +P L +
Sbjct: 307 RKAGLHSGLLPLLDVALEQPMGQ------RFVQLALDNTDERVKAGKPVSPGFLFASLMW 360
Query: 349 HQAL 352
H L
Sbjct: 361 HHVL 364
>gi|320155390|ref|YP_004187769.1| poly(A) polymerase [Vibrio vulnificus MO6-24/O]
gi|319930702|gb|ADV85566.1| poly(A) polymerase [Vibrio vulnificus MO6-24/O]
Length = 453
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 128/251 (50%), Gaps = 12/251 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +Q+++ F
Sbjct: 29 ISRKQISDHALKVLYRLHGAGFDAFLVGGGVRDLLLGQSPKDFDIATNATPEQLKQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG------EGKETVLLSQIPYGCDEIDLVR 176
+IGRRF + + +IEV++F + + KE +LL YG + D R
Sbjct: 89 CRLIGRRFRLAHIMFGREIIEVATFRGHHQDANSQISQQSKEGMLLRDNVYGTIDEDAER 148
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFTIN+++++ I+DYA G+ DL +R + + ED R+LR +R
Sbjct: 149 ------RDFTINAMYYNIADYSIHDYAGGVEDLEDRLVRLIGDPETRYREDPVRMLRAIR 202
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
AA+L +D + ++ + + +R+ E +L G + L+R YNL +
Sbjct: 203 FAAKLDFDIEEDTAAPIEEMAYLLRDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 262
Query: 297 LLPFHAAYLDQ 307
+ P +AY +
Sbjct: 263 MFPAISAYFTE 273
>gi|221133901|ref|ZP_03560206.1| poly(A) polymerase I [Glaciecola sp. HTCC2999]
Length = 443
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 124/236 (52%), Gaps = 20/236 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL+ L + GF+AYLVGGCVRDLLL + PKDFD+ T A +QI+ QF IIGRRF +
Sbjct: 36 VLRRLNAAGFEAYLVGGCVRDLLLNQHPKDFDIATDATPEQIKAQFKNCRIIGRRFRLAH 95
Query: 135 VHIKGSVIEVSSF-----------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHR 183
V +IEV++F + K GEG+ L+ +G E D R R
Sbjct: 96 VVFGREIIEVATFRGPHIQDKNTSDKSKKDGEGQ---LVRDNVFGTLEQDAAR------R 146
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFTIN+++++ I D+A GI + + + + ED R++R +R AA+L +
Sbjct: 147 DFTINAMYYNVVDGTIRDFAGGIDSIEEKTISLIGDPETRYREDPVRMIRAVRFAAKLDM 206
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ + D A+H + +E + +R+ E+ +L G ++ LL Y L L P
Sbjct: 207 TIDEVSDEAIHKFAYLLENIPPARLFEEVLKLLFSGQGLTTYQLLLEYGLFDKLFP 262
>gi|433658582|ref|YP_007275961.1| Poly(A) polymerase [Vibrio parahaemolyticus BB22OP]
gi|432509270|gb|AGB10787.1| Poly(A) polymerase [Vibrio parahaemolyticus BB22OP]
Length = 455
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 123/246 (50%), Gaps = 17/246 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F
Sbjct: 31 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEQKNKNISQQSKEGMLLRDNVYGTIDED 148
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINS++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 149 AER------RDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLR 202
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L +D + ++ + + +R+ E +L G + LLR YNL
Sbjct: 203 AVRFAVKLDFDIEEDTAAPIEEMAPLLREIPSARLFEESLKLLQSGHGLETYHLLREYNL 262
Query: 294 LKILLP 299
+ L P
Sbjct: 263 FQQLFP 268
>gi|358638447|dbj|BAL25744.1| RNA-poly(A) polymerase [Azoarcus sp. KH32C]
Length = 452
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 145/301 (48%), Gaps = 25/301 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI R + + V L+ G +A++VGG VRDLL+ PKD+DV T+A +++R F
Sbjct: 30 GIRREQLSPAARKVCMTLQEHGHKAFVVGGAVRDLLIGHPPKDYDVATSATPEEVRALFR 89
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFET--------VAKHGEGKETVLLSQIPYGCDEID 173
RS IIGRRF I V IEVS+F +HG VL + YG D
Sbjct: 90 RSRIIGRRFKIVHVMSGPETIEVSTFRANQAAEDAVTDEHGR----VLHDNV-YGSQAED 144
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFT+N+L++DP +I DY +G++DL+ LR + + ED R+LR
Sbjct: 145 ATR------RDFTVNALYYDPGNEQIIDYHHGVADLQQKTLRMIGDPRTRYREDPVRMLR 198
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R+ A+LGL+ + ++S +E + +R+ E+ +L G A + LR L
Sbjct: 199 AVRLGAKLGLTLDPAASHPIRDMASLLENVPAARLFDEMLKLLFSGYAVRCLKQLREEGL 258
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALV 353
LLP L+Q G+ + N D V D+P L +H+ L
Sbjct: 259 HHGLLPLLDVILEQPLGE------RFVWLSLENTDDRVRADKPVSPGFLFATLLWHEVLA 312
Query: 354 S 354
+
Sbjct: 313 N 313
>gi|253698789|ref|YP_003019978.1| poly(A) polymerase [Geobacter sp. M21]
gi|251773639|gb|ACT16220.1| poly(A) polymerase [Geobacter sp. M21]
Length = 482
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/333 (28%), Positives = 155/333 (46%), Gaps = 59/333 (17%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R+ + + +L LK QGF YLVGG VRDLLL R PKDFDV+T A Q+++ F
Sbjct: 17 VSRSQLSPNAVKILYKLKEQGFTGYLVGGGVRDLLLGREPKDFDVVTDATPAQLKKMFRN 76
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----------------------------ETVAKHG 154
+IGRRF + +H +IEV++F E VA+
Sbjct: 77 CRLIGRRFRLAHLHFHDEIIEVATFRSTVDASAEAPAEETAEASSEAALELPQEAVAEAE 136
Query: 155 --------------------EGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
+ ++ ++L +G E D VR RDFT+N+LF++
Sbjct: 137 LLEGEREGRRRRGHHGPSMLKSEDGMVLRDNVFGTPEEDAVR------RDFTVNALFYNI 190
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
I D+ G+ DL+ +RT+ + FTED R++R +R A+ LG + + + A+
Sbjct: 191 ADFSIIDHVGGMEDLKQGLIRTIGDPLVRFTEDPVRMIRAIRFASMLGFNIEERTEAAIE 250
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA-GKIT 313
L +I + R+ E+ +L GA E + ++R L L P A+L +++ G
Sbjct: 251 ELCGTINKATPPRLYEEVLKLLLLGAGERTYQMMRHSGLFAPLFPHFDAWLARESEGYPH 310
Query: 314 AENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
A + + +D+L+ D P L + L+
Sbjct: 311 AR----VSKGLEWVDELIGQDEPVSQPLLIALV 339
>gi|28899278|ref|NP_798883.1| polyA polymerase [Vibrio parahaemolyticus RIMD 2210633]
gi|308094714|ref|ZP_05891383.2| polyA polymerase [Vibrio parahaemolyticus AN-5034]
gi|308125331|ref|ZP_05774567.2| polyA polymerase [Vibrio parahaemolyticus K5030]
gi|28807502|dbj|BAC60767.1| polyA polymerase [Vibrio parahaemolyticus RIMD 2210633]
gi|308089641|gb|EFO39336.1| polyA polymerase [Vibrio parahaemolyticus AN-5034]
gi|308111753|gb|EFO49293.1| polyA polymerase [Vibrio parahaemolyticus K5030]
Length = 453
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 123/246 (50%), Gaps = 17/246 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F
Sbjct: 29 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEQKNKNISQQSKEGMLLRDNVYGTIDED 146
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINS++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 147 AER------RDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLR 200
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L +D + ++ + + +R+ E +L G + LLR YNL
Sbjct: 201 AVRFAVKLDFDIEEDTAAPIEEMAPLLREIPSARLFEESLKLLQSGHGLETYHLLREYNL 260
Query: 294 LKILLP 299
+ L P
Sbjct: 261 FQQLFP 266
>gi|442319909|ref|YP_007359930.1| poly(A) polymerase [Myxococcus stipitatus DSM 14675]
gi|441487551|gb|AGC44246.1| poly(A) polymerase [Myxococcus stipitatus DSM 14675]
Length = 571
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 150/305 (49%), Gaps = 31/305 (10%)
Query: 74 VVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPIC 133
VVL+ L G QAYLVGGCVRDLLL R PKDFDV T+A+ ++R F +IGRRF +
Sbjct: 145 VVLR-LHQHGHQAYLVGGCVRDLLLGRKPKDFDVATSAHPGEVRAIFRNCRLIGRRFRLA 203
Query: 134 RVHIKGS-VIEVSSF---------------ETVAKHGEGKETVLLSQIPYGCDEIDLVRW 177
V+ KG +IEVS+F E A+ G G + ++ +G D+ D R
Sbjct: 204 HVYFKGGKIIEVSTFRANPTELEAASPQTHEDEAEAG-GDDLLITHDNVFGTDQQDARR- 261
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
RDFTIN LF+D ++ DY G DL +RT+ + ED RILR +R
Sbjct: 262 -----RDFTINGLFYDVSEGRVIDYVRGRRDLDERFIRTIGDPEVRMREDPVRILRAVRF 316
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
AA+L L AM + R +R++ E ++ G + ++ LL + LK+L
Sbjct: 317 AAKLDLDIESRTYAAMEGAVEDLPRCAPARLLEETFRLIRGGVSAPALKLLDALDALKLL 376
Query: 298 LPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSF---HQALVS 354
LP AYL Q GK E LD+ V+ P D + + L H A +
Sbjct: 377 LPPVNAYLKQH-GK---EGEKTFYAFAQALDRRVAAGEPLDDAILLAALLVPISHSAPPA 432
Query: 355 DPQDA 359
+PQ+
Sbjct: 433 EPQEG 437
>gi|254447201|ref|ZP_05060668.1| poly(A) polymerase [gamma proteobacterium HTCC5015]
gi|198263340|gb|EDY87618.1| poly(A) polymerase [gamma proteobacterium HTCC5015]
Length = 434
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 126/240 (52%), Gaps = 13/240 (5%)
Query: 68 IPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIG 127
+P+ ++ L G +AYLVGGCVRDLL+ PKDFDV T+A +++ F ++G
Sbjct: 24 VPRSVLNIVARLNEAGHEAYLVGGCVRDLLIGLRPKDFDVATSATPDEVKALFRNCRLVG 83
Query: 128 RRFPICRVHIKGSVIEVSSFETVAKHGEGKETV-------LLSQIPYGCDEIDLVRWRNS 180
RRF + + + IEV++F + K+ V +LS YG E D R
Sbjct: 84 RRFRLAHILLGRDFIEVATFRAGQESAGKKQAVAHSDSGRILSDNVYGSLEQDAFR---- 139
Query: 181 IHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAAR 240
RDF++N+L+FD I DY ++D+ +LR + + ED R+LR +R AA+
Sbjct: 140 --RDFSVNALYFDVRDESIVDYVGAMADIEARQLRLIGDPDTRYREDPVRMLRAVRFAAK 197
Query: 241 LGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
LG S + + LS +E + +R+ E+ +L G +S+ L +++LL+ LLP
Sbjct: 198 LGFSIEPHTEAPIRELSDHLEDIPPARLFDEVIKLLQSGHGVASLDGLWQHDLLRYLLPM 257
>gi|343507325|ref|ZP_08744758.1| polyA polymerase [Vibrio ichthyoenteri ATCC 700023]
gi|342799540|gb|EGU35099.1| polyA polymerase [Vibrio ichthyoenteri ATCC 700023]
Length = 458
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 122/245 (49%), Gaps = 16/245 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL PKDFD+ T A +QIR+ F
Sbjct: 29 ISRKQISDNALKVLYRLHGAGFDAFLVGGGVRDLLLAHSPKDFDIATNATPEQIRQLFKN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEIDL 174
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEPSKNVAMQSKEGMLLRDNVYGTIDEDA 146
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTIN+++++ I+DYA G DL +R + + ED R+LR
Sbjct: 147 ER------RDFTINAMYYNIGNFAIHDYARGNEDLEDKLVRLIGDPETRYREDPVRMLRA 200
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L +D + L+ ++ + +R+ E ML G + L+R YNL
Sbjct: 201 IRFAVKLDFDIEEDTAAPIEELAHLLKEIPSARLYEESLKMLQTGYGLETYHLMREYNLF 260
Query: 295 KILLP 299
+ L P
Sbjct: 261 QPLFP 265
>gi|256821580|ref|YP_003145543.1| poly(A) polymerase [Kangiella koreensis DSM 16069]
gi|256795119|gb|ACV25775.1| poly(A) polymerase [Kangiella koreensis DSM 16069]
Length = 456
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 129/239 (53%), Gaps = 8/239 (3%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L + G++++LVGG VRD+LL PKDFD+ T A +QI+ F
Sbjct: 36 ISRKDISDNALKVLYRLSNAGYESFLVGGGVRDILLGLHPKDFDIATNATPEQIKELFRN 95
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG--EGKETVLLSQIPYGCDEIDLVRWRNS 180
IIGRRF + + VIEV++F + KE ++L YG E D +R
Sbjct: 96 CRIIGRRFRLAHILFGRDVIEVATFRAHCDDNIQQAKEGMILRDNVYGDIEEDAIR---- 151
Query: 181 IHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAAR 240
RDFTIN+L+++ ++D+ +G++DLR +LR + + ED R+LR +R+A +
Sbjct: 152 --RDFTINALYYNIKDFSVHDFCDGLADLRKRQLRMIGDPETRYREDPVRMLRAVRLACK 209
Query: 241 LGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
L L+ + + LS +E++ +R+ E + GAA+ + LR Y L L P
Sbjct: 210 LNLTIEPNTLKPVAELSHFLEQVPAARLWEEYRKLFLAGAAKLTFQKLREYGLFHALFP 268
>gi|262273771|ref|ZP_06051584.1| poly(A) polymerase [Grimontia hollisae CIP 101886]
gi|262222186|gb|EEY73498.1| poly(A) polymerase [Grimontia hollisae CIP 101886]
Length = 451
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 138/272 (50%), Gaps = 19/272 (6%)
Query: 39 MCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLL 98
M D+ + +D + + + GI+R I + + VL L GF+AYLVGG VRDLLL
Sbjct: 1 MNRDNKTRAIDDLKLEIIPRQEHGISRKDISENALKVLYRLNKAGFEAYLVGGGVRDLLL 60
Query: 99 RRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF----------E 148
+ PKDFD+ T A +++R+ F ++GRRF + + VIEV++F +
Sbjct: 61 NKQPKDFDIATNATPEEVRKLFRNCRLVGRRFRLAHILFGRDVIEVATFRGHHAGDKSDK 120
Query: 149 TVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISD 208
A+ +G +LL YG + D R RDFTIN+L+++ + DYA G+ D
Sbjct: 121 AAARSNDG---MLLRDNVYGTIDEDAER------RDFTINALYYNIDDFSVRDYAGGVED 171
Query: 209 LRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRI 268
L+ +R + + ED R+LR +R AA+L + + + +L+ + + +R+
Sbjct: 172 LKNRTIRLIGDPETRYREDPVRMLRAVRFAAKLDMRINEATAAPIPALAHLLRDIPAARL 231
Query: 269 MMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
E +L G ++ LLR +NL L P
Sbjct: 232 FEESLKLLQSGQGLATYRLLRDFNLFSPLFPL 263
>gi|148979543|ref|ZP_01815574.1| polyA polymerase [Vibrionales bacterium SWAT-3]
gi|145961727|gb|EDK27023.1| polyA polymerase [Vibrionales bacterium SWAT-3]
Length = 451
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 12/249 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRD+LL PKDFD+ T A +QI+ F
Sbjct: 29 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKNLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKH------GEGKETVLLSQIPYGCDEIDLVR 176
+IGRRF + + +IEV++F + + KE +LL YG + D R
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSKEGMLLRDNVYGSVDEDAER 148
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFTIN+++++ I+DYA G+ DL +R + + ED R+LR +R
Sbjct: 149 ------RDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMR 202
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
+A+L +D + L+ ++ + +R+ E +L G + L+R YNL +
Sbjct: 203 FSAKLDFDIEEDTADPIEGLAHLLKDIPAARLYEESLKLLQSGYGLETYHLMREYNLFQQ 262
Query: 297 LLPFHAAYL 305
+ P A Y
Sbjct: 263 MFPAVAEYF 271
>gi|417948857|ref|ZP_12591998.1| poly(A) polymerase [Vibrio splendidus ATCC 33789]
gi|342808988|gb|EGU44120.1| poly(A) polymerase [Vibrio splendidus ATCC 33789]
Length = 451
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 12/249 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRD+LL PKDFD+ T A +QI+ F
Sbjct: 29 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKNLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKH------GEGKETVLLSQIPYGCDEIDLVR 176
+IGRRF + + +IEV++F + + KE +LL YG + D R
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSKEGMLLRDNVYGSVDEDAER 148
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFTIN+++++ I+DYA G+ DL +R + + ED R+LR +R
Sbjct: 149 ------RDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMR 202
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
+A+L +D + L+ ++ + +R+ E +L G + L+R YNL +
Sbjct: 203 FSAKLDFDIEEDTADPIEGLAHLLKDIPAARLYEESLKLLQSGYGLETYHLMREYNLFQQ 262
Query: 297 LLPFHAAYL 305
+ P A Y
Sbjct: 263 MFPAVAEYF 271
>gi|417318997|ref|ZP_12105555.1| poly(A) polymerase [Vibrio parahaemolyticus 10329]
gi|328474187|gb|EGF44992.1| poly(A) polymerase [Vibrio parahaemolyticus 10329]
Length = 455
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 123/246 (50%), Gaps = 17/246 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F
Sbjct: 31 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEQKNKNISQQSKEGMLLRDNVYGTIDED 148
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINS++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 149 AER------RDFTINSMYYNIADYSIHDYARGIEDLEDRLIRLIGDPETRYREDPVRMLR 202
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L +D + ++ + + +R+ E +L G + LLR YNL
Sbjct: 203 AVRFAVKLDFDIEEDTAAPIEEMAPLLREIPSARLFEESLKLLQSGHGLETYHLLREYNL 262
Query: 294 LKILLP 299
+ L P
Sbjct: 263 FQQLFP 268
>gi|218667450|ref|YP_002426193.1| polyA polymerase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|218519663|gb|ACK80249.1| polyA polymerase [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 477
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/251 (34%), Positives = 130/251 (51%), Gaps = 13/251 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + VL L GFQAYLVGG VRDLLL R PKDFDV T A+ +Q+R+ F R
Sbjct: 25 VSRLQISDSALQVLNGLHRAGFQAYLVGGSVRDLLLGREPKDFDVATDAHPEQVRKLFRR 84
Query: 123 -SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET------VLLSQIPYGCDEIDLV 175
+ +IGRRF + V +IEV++F A E + + +L+ YG E D
Sbjct: 85 NARLIGRRFILVHVQFGNEIIEVATFRGSANGKEDESSEHSETGRILADNVYGSLEEDAR 144
Query: 176 RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGL 235
R RDFT N+L+++ I D++ G+ DL+ +LR + + ED R+LR +
Sbjct: 145 R------RDFTANALYYNIADRSILDFSTGMEDLQAGRLRVIGDPEQRYREDPVRMLRAV 198
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R AA+LG + + + ++ + +R+ E + G A++S LR+ L
Sbjct: 199 RFAAKLGFTLDAAAQAPIAACRKLLQEVPSARLFEETLKLFLTGNAQTSFEHLRQMGLFA 258
Query: 296 ILLPFHAAYLD 306
L P A LD
Sbjct: 259 ALFPQVDALLD 269
>gi|83648899|ref|YP_437334.1| tRNA nucleotidyltransferase/poly(A) polymerase [Hahella chejuensis
KCTC 2396]
gi|83636942|gb|ABC32909.1| tRNA nucleotidyltransferase/poly(A) polymerase [Hahella chejuensis
KCTC 2396]
Length = 457
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 144/285 (50%), Gaps = 24/285 (8%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + VL L S + A+LVGG VRDLLL PKDFDV T+A +Q+R QF+
Sbjct: 33 VSRKQISPAALKVLYRLNSANYDAFLVGGGVRDLLLGEQPKDFDVATSATPEQVREQFNN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKH-GEGKETVLLS---QI----PYGCDEIDL 174
+IGRRF + V +IEV++F ++ GE + S QI YG E D
Sbjct: 93 CRLIGRRFRLAHVRFGREIIEVATFRAGHQNAGEDDGDAVTSDSGQILRDNVYGNQEEDA 152
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
+R RDFT+N+L++ IYDYA GI D+ LR + + ED R+LR
Sbjct: 153 LR------RDFTVNALYYCVRDFSIYDYAGGIEDIEHRVLRLIGDPETRYREDPVRMLRA 206
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
R AA+L S + + + L + + +R+ E+ + G A + +LR+++L
Sbjct: 207 ARFAAKLDFSIEERTASPILELGPLLLNIPSARLFEEVLKLFLSGKAVRTFEILRQFDLF 266
Query: 295 KILLPFHAAYLDQQAGKITAENPM---MLMRLFFNLDKLVSCDRP 336
K L P L+ E+P ++++ N DK ++ D+P
Sbjct: 267 KFLFPETDRLLEN-------EHPHAEKLILQALRNTDKRIAQDKP 304
>gi|37680945|ref|NP_935554.1| polyA polymerase [Vibrio vulnificus YJ016]
gi|37199695|dbj|BAC95525.1| polyA polymerase [Vibrio vulnificus YJ016]
Length = 463
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 128/251 (50%), Gaps = 12/251 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +Q+++ F
Sbjct: 39 ISRKQISDHALKVLYRLHGAGFDAFLVGGGVRDLLLGQSPKDFDIATNATPEQLKQLFRN 98
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG------EGKETVLLSQIPYGCDEIDLVR 176
+IGRRF + + +IEV++F + + KE +LL YG + D R
Sbjct: 99 CRLIGRRFRLAHIMFGREIIEVATFRGHHQDANSQISQQSKEGMLLRDNVYGTIDEDAER 158
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFTIN+++++ I+DYA G+ DL +R + + ED R+LR +R
Sbjct: 159 ------RDFTINAMYYNIADYSIHDYAGGVEDLEDRLVRLIGDPETRYREDPVRMLRAIR 212
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
AA+L +D + ++ + + +R+ E +L G + L+R YNL +
Sbjct: 213 FAAKLDFDIEEDTAAPIEEMAHLLRDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 272
Query: 297 LLPFHAAYLDQ 307
+ P +AY +
Sbjct: 273 MFPAISAYFTE 283
>gi|452745803|ref|ZP_21945635.1| polyA polymerase [Mannheimia haemolytica serotype 6 str. H23]
gi|452085942|gb|EME02333.1| polyA polymerase [Mannheimia haemolytica serotype 6 str. H23]
Length = 436
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 129/246 (52%), Gaps = 14/246 (5%)
Query: 68 IPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EII 126
P+ + ++ L+ G++AY+VGGC+RDLLL + PKDFD+ T A ++I+R F R +I
Sbjct: 13 FPKNAISIVDKLQIAGYEAYIVGGCIRDLLLEKKPKDFDIATNARPEEIQRIFGRQCRLI 72
Query: 127 GRRFPICRVHIKGSVIEVSSFETVAK-HGEGK------ETVLLSQIPYGCDEIDLVRWRN 179
GRRF + + + EV++F + H K E +LL YG D R
Sbjct: 73 GRRFRLAHIVYGREIFEVATFRAGHESHRNDKISKVSDEGMLLRDNVYGTLREDAER--- 129
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFT+N+L++D N I+D+ NGI DLR KL + + + ED R+LR +R A
Sbjct: 130 ---RDFTVNALYYDIKRNLIFDFFNGIEDLRAGKLSLIGEPTIRYQEDPVRMLRAVRFMA 186
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+L + K + + ++ + + +R+ E +L GA + LLR Y L + L P
Sbjct: 187 KLDMFLDKATASPIRDMAVLLTNIPAARLFDESLKLLQTGAGLKTYQLLREYELWQFLFP 246
Query: 300 FHAAYL 305
A+
Sbjct: 247 VLPAFF 252
>gi|134095805|ref|YP_001100880.1| poly(A) polymerase [Herminiimonas arsenicoxydans]
gi|133739708|emb|CAL62759.1| Poly(A) polymerase [Herminiimonas arsenicoxydans]
Length = 453
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 118/218 (54%), Gaps = 8/218 (3%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ GF+A+LVGG VRDLLL PKDFD+ T A +Q+++ F R+ IIG+RF I
Sbjct: 44 VTSTLQEAGFKAFLVGGAVRDLLLGVKPKDFDIATNATPEQVKKLFRRAFIIGKRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE--TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
V ++EV++F + G K+ +L +G D +R RDFTIN++++
Sbjct: 104 VMFGQDLLEVTTFRGSSSDGAPKDEHGRVLRDNTFGEQHEDALR------RDFTINAMYY 157
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
DP + DY GI+D+R LR + + ED R+LR +R AA+L + D
Sbjct: 158 DPATQTVLDYHGGIADIRTRTLRIIGVPEARYREDPVRLLRVVRFAAKLNFAIAPDTSAP 217
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+ ++ I + +R+ E+ +L G A + + LR+
Sbjct: 218 IAVMAPLINNVPTARVFDEMLKLLMSGHALACLQQLRK 255
>gi|409203453|ref|ZP_11231656.1| poly(A) polymerase [Pseudoalteromonas flavipulchra JG1]
Length = 440
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 151/322 (46%), Gaps = 36/322 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R + VL LK G+ AYLVGGC+RD++L PKDFDV+T A +QI++ F
Sbjct: 17 GISRKQFSPNAIKVLYRLKDGGYDAYLVGGCIRDIMLGIEPKDFDVVTNATPEQIKKLFR 76
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFE-------------TVAKHGEGKETVLLSQIPYG 168
+IGRRF + + +IEV++ ++HG+ LL YG
Sbjct: 77 NCRLIGRRFRLAHIVFGREIIEVATMRGHHQSDDSCATTSQASEHGQ-----LLRDNVYG 131
Query: 169 CDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
E D R RDFTIN+L++ + D+A G++D++ K+ + + ED
Sbjct: 132 SIEEDAER------RDFTINALYYSINDFTLRDFAGGVADIKARKIELIGDPETRYREDP 185
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
R+LR +R A +L + T + +L+ + + +R+ E + G AE + +
Sbjct: 186 VRMLRAIRFATKLDMEIATPTRTPIKALAPLLGHIPAARLFEETLKLFLNGKAEENFLQM 245
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR---PA---DYTLW 342
R Y L L P L Q + ++F N D ++ D+ PA LW
Sbjct: 246 REYGLFAQLFPALDKILAQPDNDFERR---FIQQMFANTDSRINADKKVTPAFIYAALLW 302
Query: 343 VGLLSFHQALVSDPQ---DAFV 361
+L+ +AL ++ DAF+
Sbjct: 303 FPILAKSEALAAEGMNEYDAFM 324
>gi|171057366|ref|YP_001789715.1| poly(A) polymerase [Leptothrix cholodnii SP-6]
gi|170774811|gb|ACB32950.1| poly(A) polymerase [Leptothrix cholodnii SP-6]
Length = 498
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 155/311 (49%), Gaps = 22/311 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + V+ L+ GF+AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 33 GIDPGLVDDRAVKVVTTLQDAGFEAYIVGGAVRDLLLGHRPKDFDVATNATPEQVKSHFR 92
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSF---------------ETVAKHG-EGKETVL 161
R+ IIGRRF I VH +G VIEVS+F E +K +GK V+
Sbjct: 93 RAFIIGRRFRIVHVVHGRGREHEVIEVSTFRAKPDASAAEQVSGNEKTSKAALQGKSHVV 152
Query: 162 LSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
++ D + + ++ RDFT+N+L++DP + DY NGI+D + LR +
Sbjct: 153 DAEGRVLRDNVWGPQIDDAARRDFTVNALYYDPRGQIVVDYHNGIADAKKRVLRMIGEPE 212
Query: 222 LSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAA 281
+ ED RI+R +R AA+LG + ++ + + SR+ E+ +L G +
Sbjct: 213 ARYREDPVRIIRVVRFAAKLGFEIEPATRAPIIRMADLLANVPASRLFDEMIKLLQTGHS 272
Query: 282 ESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTL 341
+S+ LR+ L + + P A LD A + + M L + D+ V+ +P +
Sbjct: 273 LASLEELRKQGLHRGVFPILDAVLD-DAHRHDGREKFIQMAL-ADTDRRVNEGKPVAPSF 330
Query: 342 WVGLLSFHQAL 352
+ + +H +
Sbjct: 331 MLACMLWHDVI 341
>gi|431932756|ref|YP_007245802.1| poly(A) polymerase [Thioflavicoccus mobilis 8321]
gi|431831059|gb|AGA92172.1| poly(A) polymerase [Thioflavicoccus mobilis 8321]
Length = 449
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++RA I + + VL L+ GFQA+LVGG VRDLLL PKDFDV T A +Q+R F
Sbjct: 27 VSRANISENALKVLYRLRKAGFQAHLVGGGVRDLLLGHEPKDFDVATDARPEQVREVFRN 86
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA--KHGEGKETVLLSQI----PYGCDEIDLVR 176
+IGRRF + VH ++EV++F A + EG+ + +I YG E D +R
Sbjct: 87 CRLIGRRFRLAHVHFGSDIVEVATFRGGAADEDAEGERCLENGRIVRDNAYGTIEEDALR 146
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLI-PAYLSFTEDCARILRGL 235
RDFTINSL+++ + DYA G++DL+ LR + + ED R+LR +
Sbjct: 147 ------RDFTINSLYYNIADFSLIDYAGGLADLQAGTLRLIGDDPERRYREDPVRMLRAV 200
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R A +LG S + + L+ + + +R+ EL + G + LR Y L
Sbjct: 201 RFACKLGFSIDPACERPLFELAQLLRDIPAARLFDELLKLFLSGTGLMAFEKLRHYGLFA 260
Query: 296 ILLP 299
L P
Sbjct: 261 YLFP 264
>gi|339499890|ref|YP_004697925.1| poly(A) polymerase [Spirochaeta caldaria DSM 7334]
gi|338834239|gb|AEJ19417.1| poly(A) polymerase [Spirochaeta caldaria DSM 7334]
Length = 389
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 139/257 (54%), Gaps = 19/257 (7%)
Query: 79 LKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIK 138
LK G ++++VGG VRDL++ + PKDFD++T+A+ QI+R F + IIGRRF + V++
Sbjct: 43 LKQAGHESFIVGGAVRDLIVGKKPKDFDIVTSASPSQIKRLFRNARIIGRRFRLVHVYVG 102
Query: 139 GSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNK 198
++ EV++F ++ + G T YG E D++R RDFT+N+LF+DP
Sbjct: 103 DTIYEVATFRSL-RDGHNGNT-------YGTIEEDVLR------RDFTLNALFYDPKEQV 148
Query: 199 IYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSS 258
+ DY G D++ +R +IP + F +D R+LR ++ AA G + + +
Sbjct: 149 VVDYVEGFKDIKTRLIRPIIPLSVMFKDDPVRMLRAVKYAATTGFRLSLPLRWKIKQQAH 208
Query: 259 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPM 318
++ + SR EL +++ G + + + L +++L + L P + + A+
Sbjct: 209 LLDTVSPSRRTEELFKIINSGNSFAIVDQLLKFSLYQYLQPNAVSMMSSD-----AKFKN 263
Query: 319 MLMRLFFNLDKLVSCDR 335
+ M+ LD+L+ C +
Sbjct: 264 LYMQSLLALDQLIKCGK 280
>gi|121608734|ref|YP_996541.1| poly(A) polymerase [Verminephrobacter eiseniae EF01-2]
gi|121553374|gb|ABM57523.1| poly(A) polymerase [Verminephrobacter eiseniae EF01-2]
Length = 535
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 136/262 (51%), Gaps = 23/262 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V+ LK GF AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 36 GIDPELVDRRAADVVATLKQAGFAAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKSLFR 95
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKETVLLSQIPYGCDEI 172
R+ IIGRRF I VH +G VIEVS+F A G E +Q+ +
Sbjct: 96 RAFIIGRRFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAGQVSGNEKTSKAQLSGMQHAV 155
Query: 173 D----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D ++R W ++ RDFTIN++++DP + DY G+ D R LR +
Sbjct: 156 DASGRVLRDNVWGPQDEDATRRDFTINAMYYDPVSQIVVDYHKGLQDARKKTLRMIGEPT 215
Query: 222 LSFTEDCARILRGLRIAARL-GLSFCKDIDTA--MHSLSSSIERLDKSRIMMELNYMLSY 278
L + ED RI+R +R AA+L L F D TA + + + + +SR+ E+ +L
Sbjct: 216 LRYREDPVRIIRAVRFAAKLSALGFAIDAKTAAPLRQSQALLADVPQSRMFDEMLKLLQT 275
Query: 279 GAAESSICLLRRYNLLKILLPF 300
G A ++I LR+ L + + P
Sbjct: 276 GHAIATIEQLRKLGLTQGIYPL 297
>gi|338533725|ref|YP_004667059.1| poly(A) polymerase [Myxococcus fulvus HW-1]
gi|337259821|gb|AEI65981.1| poly(A) polymerase [Myxococcus fulvus HW-1]
Length = 572
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 146/292 (50%), Gaps = 11/292 (3%)
Query: 74 VVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPIC 133
VVL+ L G QAY+VGGCVRDLLL R PKDFD+ T+A ++R F +IGRRF +
Sbjct: 147 VVLR-LHQHGHQAYMVGGCVRDLLLGRKPKDFDIATSATPNEVRGIFRNCRLIGRRFRLA 205
Query: 134 RVHIKGS-VIEVSSF-----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTI 187
V+ KG +IEVS+F E A G++ + D + +++ RDFTI
Sbjct: 206 HVYFKGGKIIEVSTFRANPTELEAAANGGEDDGEGEDLLITHDNVFGTAQQDARRRDFTI 265
Query: 188 NSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCK 247
N LF+D ++ DY G DL +RT+ + ED RILR +R AA+L L
Sbjct: 266 NGLFYDVAEGRVIDYVRGRRDLDERFIRTIGDPEVRMREDPVRILRAVRFAAKLELDIES 325
Query: 248 DIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQ 307
AM + R +R++ E ++ G + ++ LL + LKILLP AYL Q
Sbjct: 326 RTYAAMEGAVEDLPRCAPARLLEETFRLIRGGVSAPALKLLDALDALKILLPPVNAYLKQ 385
Query: 308 QAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDA 359
GK E LD+ VS P D + + +L + + P+++
Sbjct: 386 H-GK---EGEKTFYAFAEALDRRVSAGEPLDDAILLAMLLIPISRSTGPEES 433
>gi|78485869|ref|YP_391794.1| poly(A) polymerase [Thiomicrospira crunogena XCL-2]
gi|78364155|gb|ABB42120.1| poly(A) polymerase [Thiomicrospira crunogena XCL-2]
Length = 484
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 135/265 (50%), Gaps = 28/265 (10%)
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
K V+ + GI+R I + + VL LK G+ AYLVGG VRD+LL PKDFDV+T A
Sbjct: 30 KVVERKQHGISRRQIDKEALDVLYGLKRAGYDAYLVGGGVRDILLGLEPKDFDVVTNAEP 89
Query: 114 KQIRRQF-HRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV------------ 160
+QI+ F R +IGRRF + V+ +V+EV++F G+G+++
Sbjct: 90 EQIKGVFKSRCRLIGRRFRLAHVYFGRNVVEVATFRG---DGDGQKSAGRSRKQVNHTRA 146
Query: 161 ------LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKL 214
L+ YG E D+ WR RDFTINSL+++ + DY G+ D+ +L
Sbjct: 147 VDDTGRLVRDNVYGSIEEDV--WR----RDFTINSLYYNIRDFSVLDYTGGMEDIEKGQL 200
Query: 215 RTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNY 274
R + + + ED R++R +R AA+LG + ++ L+ ++ + +R+ E+
Sbjct: 201 RLIGDPEMRYREDPVRMIRAIRFAAKLGFEIEPNTKAPIYELAHLLKDVSHARMFEEVLK 260
Query: 275 MLSYGAAESSICLLRRYNLLKILLP 299
+ G A LR + L L P
Sbjct: 261 LFHSGVAIEVFEKLRHFGLFTFLFP 285
>gi|395236472|ref|ZP_10414667.1| poly(A) polymerase I [Enterobacter sp. Ag1]
gi|394728899|gb|EJF28934.1| poly(A) polymerase I [Enterobacter sp. Ag1]
Length = 448
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 129/259 (49%), Gaps = 19/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 20 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFR 79
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 80 NCRLVGRRFRLAHVMFGPEIIEVATFR--GHHEEQQSADRQTSQRGQNGMLLRDNIFGSI 137
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G++DL +R + + ED R
Sbjct: 138 EEDAQR------RDFTINSLYYSVADFSVRDYVGGLNDLNKGIIRLIGDPETRYREDPVR 191
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L ++ + + L++ + + +R+ E +L G + LLR
Sbjct: 192 MLRAVRFAAKLNMTISPETGEPIPRLATLLNDVPPARLFEESLKLLQAGYGFETYQLLRE 251
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y L + L P Y +Q
Sbjct: 252 YQLFQPLFPIITRYFTEQG 270
>gi|384252766|gb|EIE26242.1| hypothetical protein COCSUDRAFT_83617 [Coccomyxa subellipsoidea
C-169]
Length = 448
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 123/386 (31%), Positives = 179/386 (46%), Gaps = 42/386 (10%)
Query: 102 PKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAK--------- 152
PKDFD++TTA QI+R F IIG+RFPI V+ G+ +EVSSF T A
Sbjct: 19 PKDFDILTTATPVQIKRLFGSCRIIGKRFPIVHVYADGACLEVSSFGTRANRELIPQDAA 78
Query: 153 --------HGEGKE-----------TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFD 193
H +GK ++ + +D N++ RDFT N++ FD
Sbjct: 79 AFLPRHKPHDKGKAGRKPGAGMPAAAGARPEVLWASARVD-----NAMARDFTCNAIMFD 133
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
PF + DYA G D + LRT+I SF++D AR+LR +R AAR+GL+ + AM
Sbjct: 134 PFSALLLDYAGGFRDCQRRVLRTVIDPETSFSDDPARMLRAVRHAARVGLTIEEKTGQAM 193
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKIT 313
+ + +L SR++ME + SYGAA +S+ LL RY LL +L+P A ++
Sbjct: 194 VGKAGEVLKLPGSRLLMEAQALFSYGAAAASLRLLWRYRLLDLLVPPLAERFTRRRLPRN 253
Query: 314 AENPMM--LMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQDAFVVWVFASVLYH 371
P+ ++ L LD + P D+T+W ++ LV+ DA A
Sbjct: 254 PRRPVSEPVLDLLEQLDAKMQPHLPIDWTVWAAVMV--APLVT---DALGAAQRAKRAKA 308
Query: 372 GKWKEGVKFARDRAKEPVKFVPEISGFSEIESDEQLAVKVTELALSVQDCVNDLTKASSG 431
G + K DR E K E G S + + K + V D V L ASSG
Sbjct: 309 GSKQRSGKQGPDRV-EASKAEEEDGGCSICKRSADVLEKEAKFRGIVDDTVRSLILASSG 367
Query: 432 YVFVSKKIE-RNVQQIFDVLVNSIES 456
V I Q++ +LV ++S
Sbjct: 368 GAEVKGMIPVGQWQKVGSLLVGLMDS 393
>gi|261338862|ref|ZP_05966720.1| hypothetical protein ENTCAN_05058 [Enterobacter cancerogenus ATCC
35316]
gi|288318685|gb|EFC57623.1| polyA polymerase [Enterobacter cancerogenus ATCC 35316]
Length = 447
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 152/323 (47%), Gaps = 37/323 (11%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 21 ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCDE 171
++GRRF + V +IEV++F H E G+ +LL +G E
Sbjct: 81 CRLVGRRFRLAHVMFGPEIIEVATFR---GHHEASAADRTTSQRGQNGMLLRDNIFGSIE 137
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 138 EDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLKDGLIRLIGTPETRYREDPVRM 191
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L + + + L++ I + +R+ E +L G + LLR Y
Sbjct: 192 LRAVRFAAKLNMRISPETAEPIPRLATLINDVPPARLFEEALKLLQAGYGFETYNLLREY 251
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWV 343
+L + L P Y + ++PM M+ ++ N D + D PA W
Sbjct: 252 SLFQPLFPTITRYFTE-----NGDSPMERMIAQVLKNTDTRIHNDMRVNPAFLFSAMFWY 306
Query: 344 GLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 307 PLLETAQRITQESGLAYYDAFAL 329
>gi|345297915|ref|YP_004827273.1| poly(A) polymerase [Enterobacter asburiae LF7a]
gi|345091852|gb|AEN63488.1| poly(A) polymerase [Enterobacter asburiae LF7a]
Length = 454
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 33/317 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 28 ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRN 87
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCDE 171
++GRRF + V +IEV++F H E G+ +LL +G E
Sbjct: 88 CRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNPADRTTSQRGQNGMLLRDNIFGSIE 144
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 145 EDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLKAGLIRLIGTPETRYREDPVRM 198
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L + + + L++ I + +R+ E +L G + LLR Y
Sbjct: 199 LRAVRFAAKLNMRISPETGEPIPRLATLINDVPPARLFEEALKLLQAGYGFETYNLLREY 258
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWV 343
+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 259 SLFQPLFPTITRYFTE-----NGDSPMERIIAQVLKNTDTRIHNDMRVNPAFLFAAMFWY 313
Query: 344 GLLSFHQALVSDPQDAF 360
LL Q + + A+
Sbjct: 314 PLLETAQKIAQESGLAY 330
>gi|226328934|ref|ZP_03804452.1| hypothetical protein PROPEN_02836 [Proteus penneri ATCC 35198]
gi|225202120|gb|EEG84474.1| poly(A) polymerase [Proteus penneri ATCC 35198]
Length = 473
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 154/312 (49%), Gaps = 32/312 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L + GFQAYLVGG VRDLLL + PKDFD+ T A + +RR F
Sbjct: 39 ISRKDISDNALKVLYRLNNSGFQAYLVGGGVRDLLLGKKPKDFDIATNATPEDVRRLFRN 98
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
S ++GRRF + + VIEV++F + E + +LL +G E D
Sbjct: 99 SRLVGRRFRLAHIMFGPEVIEVATFRGSHEDHEVSDNNQSQQAQSGMLLRDNIFGSIEED 158
Query: 174 LVRWRNSIHRDFTINSLFF--DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
+R RDFT+NSL++ D F + DY G++DL+ +R + + ED R+
Sbjct: 159 AIR------RDFTLNSLYYGVDDF--AVRDYVGGLADLKAGIIRLIGDPETRYREDPVRM 210
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R A++L + + + L+ + + +R+ E +L G + L+ R+
Sbjct: 211 LRAIRFASKLDMQIAPETAEPISRLAPLLRNIPSARLFEESLKLLQTGQGYKTYKLMCRH 270
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWV 343
LL+ L P A+ + +Q + PM M+ ++ N D ++ + PA LW
Sbjct: 271 QLLEPLFPLIASKMTEQ-----HDTPMERMIDQILKNTDYRINKEMRVNPAFLFAAMLWY 325
Query: 344 GLLSFHQALVSD 355
L+ + LV +
Sbjct: 326 PLIEHAEKLVQE 337
>gi|354721591|ref|ZP_09035806.1| poly(A) polymerase I [Enterobacter mori LMG 25706]
Length = 447
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 127/245 (51%), Gaps = 14/245 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 21 ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPEQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG--------EGKETVLLSQIPYGCDEIDL 174
++GRRF + V +IEV++F + G +G+ +LL +G E D
Sbjct: 81 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGVSDRTTSQQGQNGMLLRDNIFGSIEEDA 140
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++ + DY G+ DL+ +R + + ED R+LR
Sbjct: 141 QR------RDFTINSLYYSVADFTVRDYVGGMQDLKEGLIRLIGTPETRYREDPVRMLRA 194
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L + + + L++ I + +R+ E +L G + LLR Y+L
Sbjct: 195 VRFAAKLNMRISPETGEPIPRLATLINDVPPARLFEEALKLLQAGYGFETYNLLREYSLF 254
Query: 295 KILLP 299
+ L P
Sbjct: 255 QPLFP 259
>gi|108761014|ref|YP_630764.1| poly(A) polymerase [Myxococcus xanthus DK 1622]
gi|108464894|gb|ABF90079.1| poly(A) polymerase [Myxococcus xanthus DK 1622]
Length = 548
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 150/302 (49%), Gaps = 21/302 (6%)
Query: 69 PQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGR 128
P VVL+ L G QAY+VGGCVRDLLL R PKDFD+ T+A ++R F +IGR
Sbjct: 120 PDALKVVLR-LHQHGHQAYMVGGCVRDLLLGRKPKDFDIATSATPNEVRGIFRNCRLIGR 178
Query: 129 RFPICRVHIKGS-VIEVSSFE---TVAKHGEG-------KETVLLSQIPYGCDEIDLVRW 177
RF + V+ KG +IEVS+F T +H E +L++ D +
Sbjct: 179 RFRLAHVYFKGGKIIEVSTFRANPTELEHAANGGEDEGDGEDLLITH-----DNVFGTAQ 233
Query: 178 RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRI 237
+++ RDFTIN LF+D ++ DY G DL +RT+ + ED RILR +R
Sbjct: 234 QDARRRDFTINGLFYDVAEGRVIDYVRGRRDLDERFIRTIGDPEVRMREDPVRILRAVRF 293
Query: 238 AARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL 297
AA+LGL AM + R +R++ E ++ G + ++ LL + LKIL
Sbjct: 294 AAKLGLDIESRTYAAMEGAVEDLPRCAPARLLEETFRLIRGGVSAPALKLLDALDALKIL 353
Query: 298 LPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQALVSDPQ 357
LP AYL Q GK E +LD+ VS D + + +L + + P+
Sbjct: 354 LPPVNAYLKQH-GK---EGEKTFYAFAESLDRRVSAGEALDDAILLAMLLIPISRSTGPE 409
Query: 358 DA 359
++
Sbjct: 410 ES 411
>gi|222054332|ref|YP_002536694.1| poly(A) polymerase [Geobacter daltonii FRC-32]
gi|221563621|gb|ACM19593.1| poly(A) polymerase [Geobacter daltonii FRC-32]
Length = 451
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 129/254 (50%), Gaps = 19/254 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL LK GF AYLVGG VRDLLL R PKDFD++T A QI++ F +IGRRF +
Sbjct: 28 VLYRLKDNGFTAYLVGGGVRDLLLGREPKDFDIVTDATPLQIKKMFRNCRLIGRRFRLAH 87
Query: 135 VHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI--- 181
+H + +IEV++F E A E + L + P D + R++I
Sbjct: 88 LHFQDEIIEVATFRSARLDDVPAEEPAAMDESEGHTLTGRSPLLLKSEDGMVLRDNIFGT 147
Query: 182 ------HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGL 235
RDFT+N+L ++ + DY G+ DL+ +RT+ + + F ED R++R +
Sbjct: 148 PAEDAVRRDFTVNALAYNISDFSLIDYVGGLDDLQRGVIRTIGDSGIRFVEDPVRMIRAV 207
Query: 236 RIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLK 295
R AA LG + + LS ++ + R+ E+ + GA E + LLR+ +
Sbjct: 208 RFAAMLGFRVEETTWQTILELSPTVTKASPPRLYEEVLKLFLLGAGERTYQLLRQSGIFS 267
Query: 296 ILLPFHAAYLDQQA 309
L P +L++++
Sbjct: 268 ALFPHFNDWLERES 281
>gi|211638719|emb|CAR67336.1| poly(a) polymerase (ec 2.7.7.19) (pap) (plasmid copy number
protein) [Photorhabdus asymbiotica subsp. asymbiotica
ATCC 43949]
Length = 494
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 163/343 (47%), Gaps = 39/343 (11%)
Query: 36 CREMCSDSFNQEVDVSNWK-----TVDSR-NLGITRAMIPQPSWVVLKILKSQGFQAYLV 89
C+ S + +EV+ N TV SR I+R I + + VL L GF AYLV
Sbjct: 33 CQLSSSVNAQEEVEQENLHSDLPITVISREQHNISRRDISENALKVLYRLNKSGFDAYLV 92
Query: 90 GGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF-- 147
GG VRDLLL PKDFD+ T A +Q+R+ F ++GRRF + + VIEV++F
Sbjct: 93 GGGVRDLLLGTKPKDFDIATNATPEQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRG 152
Query: 148 ---ETVAKH-----GEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKI 199
+T A + + + +LL +G E D +R RDFTINSL++ +
Sbjct: 153 PHEQTDANNEKNQSQQAQSGMLLRDNTFGSIEEDAMR------RDFTINSLYYGINDFSL 206
Query: 200 YDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSS 259
DY G++DL +R + + ED R+LR +R A++L ++ +D + L+
Sbjct: 207 RDYVGGLNDLETGVIRLIGDPETRYREDPVRMLRAIRFASKLNMTISEDTAEPISRLAFL 266
Query: 260 IERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAEN--P 317
+ + +R+ E +L G S+ LR Y+L + L P Y TA N P
Sbjct: 267 LSHIPPARLFEESLKLLQTGQGYSTYKRLREYHLFQPLFPLVERYF-------TANNDSP 319
Query: 318 M--MLMRLFFNLDKLVSCDR---PA---DYTLWVGLLSFHQAL 352
M ML ++ N D + D+ PA LW L+ + L
Sbjct: 320 MEHMLNQVLKNTDYRLQNDKRVNPAFLFAAMLWYPLIEHAEKL 362
>gi|113969072|ref|YP_732865.1| poly(A) polymerase [Shewanella sp. MR-4]
gi|113883756|gb|ABI37808.1| poly(A) polymerase [Shewanella sp. MR-4]
Length = 435
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 148/297 (49%), Gaps = 23/297 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GFQAYLVGG VRDLLL PKDFDV+T A ++I++ F
Sbjct: 8 ISRKQISENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRN 67
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEIDL 174
++GRRF + + VIEV++F HGE E + LL YG EID
Sbjct: 68 CRVVGRRFRLAHIVFGRDVIEVATFR--GHHGESNEKISKANAEGRLLRDNVYG--EID- 122
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDFT+N+L++D I Y G+ DL+ LR + + ED R+LR
Sbjct: 123 ---EDAERRDFTVNALYYDISDYSIRSYGGGMDDLKAGTLRLIGDPETRYREDPVRMLRA 179
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L ++ + + L+ ++ + +R+ E+ + G A ++ +++ Y L
Sbjct: 180 VRFATKLSMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLF 239
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLM--RLFFNLDKLVSCDRPADYTLWVGLLSFH 349
+ L P A L K + P M M + + D V+ D+P + + + ++
Sbjct: 240 EPLFPQVDALL-----KEAPKGPAMKMVQAIMKSTDTRVNEDKPVTPSFFYAAILWY 291
>gi|350571611|ref|ZP_08939930.1| poly(A) polymerase [Neisseria wadsworthii 9715]
gi|349791465|gb|EGZ45348.1| poly(A) polymerase [Neisseria wadsworthii 9715]
Length = 476
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 6/219 (2%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+ L G++AY+VGG VRDLLL PKDFDV T A +Q+R+ F RS IIGRRF I
Sbjct: 66 VVDRLHHAGYEAYVVGGAVRDLLLGVEPKDFDVATNATPEQVRKVFRRSRIIGRRFQIVH 125
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V + IEV++F + + ++ YG E D +R RDFT N+L+FDP
Sbjct: 126 VMVGPETIEVTTFRGGDNALQNEHGRIMKDNTYGSMEEDAMR------RDFTCNALYFDP 179
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
+I D+ +G+ D+R KL + + ED RILR +R++ +LG + +
Sbjct: 180 IRREIIDFHHGVEDVRNKKLVMIGEPEARYQEDPVRILRAIRLSGKLGFDIEEATAAPIA 239
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
++ ++ +R+ E+ +L G A + L+R ++
Sbjct: 240 ENAARLKNEPAARLFDEMLKILLSGYARRCLDALKRSDI 278
>gi|397656014|ref|YP_006496716.1| Poly(A) polymerase [Klebsiella oxytoca E718]
gi|394344647|gb|AFN30768.1| Poly(A) polymerase [Klebsiella oxytoca E718]
Length = 454
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 131/259 (50%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG T +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTTDRVTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGDPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L +S ++ + L++ + + +R+ E+ +L G + LLR
Sbjct: 198 MLRAVRFAAKLSMSISEETAEPIPRLATLLHDVPPARLFEEVLKLLQAGDGYQTYLLLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
YNL + L P Y ++
Sbjct: 258 YNLFQPLFPTITRYFTERG 276
>gi|422009755|ref|ZP_16356738.1| poly(A) polymerase I [Providencia rettgeri Dmel1]
gi|414093573|gb|EKT55245.1| poly(A) polymerase I [Providencia rettgeri Dmel1]
Length = 448
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 128/244 (52%), Gaps = 3/244 (1%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+ I + VL L GF+AYLVGG VRDLLL + PKDFD+ T A +QIR+ F
Sbjct: 19 ISRSDISDNALKVLYRLNKSGFEAYLVGGGVRDLLLGQKPKDFDITTNATPEQIRKLFRN 78
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGC---DEIDLVRWRN 179
++GRRF + + +IEV++F + L +Q G D I +
Sbjct: 79 CRLVGRRFRLAHIMFGPEIIEVATFRGHHDQNASDDKNLSAQAQNGMLLRDNIFGSIEED 138
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
+I RDFT+NSL+++ + DY NG++DL+ +R + + ED R+LR +R A
Sbjct: 139 AIRRDFTVNSLYYNIEDFTLRDYVNGLNDLKAGVIRLIGDPETRYREDPVRMLRAVRFAC 198
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+L +S ++ L+ + + +R+ E +L G ++ +L++Y L + L P
Sbjct: 199 KLNMSIEPKTAEPIYQLAHLLREIPSARLFEESLKLLQAGQGYATYKMLKKYGLFEQLFP 258
Query: 300 FHAA 303
A+
Sbjct: 259 VVAS 262
>gi|375259040|ref|YP_005018210.1| poly(A) polymerase I [Klebsiella oxytoca KCTC 1686]
gi|365908518|gb|AEX03971.1| poly(A) polymerase I [Klebsiella oxytoca KCTC 1686]
Length = 437
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 153/318 (48%), Gaps = 33/318 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 10 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG T +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTTDRVTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGDPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L +S ++ + L++ + + +R+ E+ +L G + LLR
Sbjct: 181 MLRAVRFAAKLSMSISEETAEPIPRLATLLHDVPPARLFEEVLKLLQAGDGYQTYLLLRE 240
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
YNL + L P Y ++ ++PM ++ ++ N D + D PA W
Sbjct: 241 YNLFQPLFPTITRYFTER-----GDSPMERIISQVLKNTDNRIRNDMRVNPAFLFAVMFW 295
Query: 343 VGLLSFHQALVSDPQDAF 360
LL Q + + A+
Sbjct: 296 YPLLETAQKIAQESGLAY 313
>gi|157960524|ref|YP_001500558.1| poly(A) polymerase [Shewanella pealeana ATCC 700345]
gi|157845524|gb|ABV86023.1| poly(A) polymerase [Shewanella pealeana ATCC 700345]
Length = 434
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 145/296 (48%), Gaps = 19/296 (6%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L GF+AYLVGG VRD+LL PKDFDV+T A ++I+R F
Sbjct: 7 AISRRQISENAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKRLFR 66
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF--------ETVAKHGEGKETVLLSQIPYGCDEID 173
++GRRF + + VIEV++ E ++K E LL YG + D
Sbjct: 67 NCRLVGRRFRLAHIVFGRDVIEVATLRGHHVDSGEKISKTNESGR--LLRDNVYGSIDED 124
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFT+N+L++D I+ Y G+ DL +R + + ED R+LR
Sbjct: 125 AER------RDFTVNALYYDISDFSIHSYGGGLQDLESRTIRLIGDPETRYREDPVRMLR 178
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +LG+S + L+ ++ + +R+ E+ + G A + ++R + L
Sbjct: 179 AVRFATKLGMSIEPKAAEPIQGLAHLLKDIPAARMYEEVLKLFFAGKALENYHMMREFGL 238
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFH 349
+ L P A L + TA+ +L + N D+ V+ D+P + L ++
Sbjct: 239 FEPLFPQLEALLKEYPNGETAK---LLQEMMANTDERVAQDKPVTPAFFYAALLWY 291
>gi|54310261|ref|YP_131281.1| polyA polymerase [Photobacterium profundum SS9]
gi|46914702|emb|CAG21479.1| putative polyA polymerase [Photobacterium profundum SS9]
Length = 449
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 158/333 (47%), Gaps = 43/333 (12%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R I + + VL L G+ AYLVGG VRDLLL + PKDFD+ T A ++I+ F
Sbjct: 10 GISRKDISENALKVLYRLNKGGYDAYLVGGGVRDLLLHKQPKDFDIATNATPEEIKSLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF-----ETVAK---------------HGEGKETVL 161
+IGRRF + + VIEV++F + AK + +E +L
Sbjct: 70 NCRLIGRRFRLAHILFGRDVIEVATFRGHHSDVPAKVEIKDKADEKGKQQVSSKSQEGML 129
Query: 162 LSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
L YG + D R RDFTIN++++ + DYANG+ DL +R +
Sbjct: 130 LRDNVYGTIDEDAER------RDFTINAMYYSAKDFTVTDYANGVEDLNNRIVRLMGDPE 183
Query: 222 LSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAA 281
+ ED R+LR +R AA+L ++ + + L+ + + +R+ E +L G
Sbjct: 184 TRYREDPVRMLRAVRFAAKLDMTIEEKTAAPIEELAPLLRDIPSARLFEESLKLLQAGQG 243
Query: 282 ESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR---PA- 337
++ LLR+YNL + L P A + + +++ M+ + DK ++ D+ PA
Sbjct: 244 LATYKLLRQYNLFQQLFPILADHFTEDH---SSQTEQMIEHILAATDKRIAEDKRVNPAF 300
Query: 338 --DYTLWVGL------LSFHQALVSDPQDAFVV 362
LW L +SF L DAF+V
Sbjct: 301 IYAAMLWYPLTTRAEEISFASGLAF--YDAFMV 331
>gi|319786655|ref|YP_004146130.1| poly(A) polymerase [Pseudoxanthomonas suwonensis 11-1]
gi|317465167|gb|ADV26899.1| poly(A) polymerase [Pseudoxanthomonas suwonensis 11-1]
Length = 478
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 138/289 (47%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLLL PKDFDV T A +Q+++ F
Sbjct: 55 ISRKDISPNALRVLYRLREAGFGAYLVGGAVRDLLLGMHPKDFDVATDATPEQVKQLFRN 114
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F G G V L+ YG E D VR
Sbjct: 115 CRLIGRRFRLAHVVYGREIIEVATFRANVDDGSGDREVEDGRLVRDNVYGTIEDDAVR-- 172
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D+ K+R + + ED R+LR +R+A
Sbjct: 173 ----RDFTCNALYYAIEDFSVRDYTGGYEDVLARKMRLIGDPETRYREDPVRMLRAVRLA 228
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+LG S + L+ + +R+ E+ + G A +S L R+ LL L+
Sbjct: 229 AKLGFSIDPPTAEPIPRLAGLLAEAAPARLFEEMLKLFLSGHAVASFEGLERHGLLGALM 288
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + M+++ D V+ D P LL
Sbjct: 289 PETAAALRSNRSGALR----RMVLKGLAGTDARVAADEPVSPAFLFALL 333
>gi|402845082|ref|ZP_10893429.1| polynucleotide adenylyltransferase [Klebsiella sp. OBRC7]
gi|423106484|ref|ZP_17094185.1| Poly(A) polymerase [Klebsiella oxytoca 10-5242]
gi|376377921|gb|EHS90688.1| Poly(A) polymerase [Klebsiella oxytoca 10-5242]
gi|402272682|gb|EJU21900.1| polynucleotide adenylyltransferase [Klebsiella sp. OBRC7]
Length = 454
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 131/259 (50%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG T +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTTDRVTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGDPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L +S ++ + L++ + + +R+ E+ +L G + LLR
Sbjct: 198 MLRAVRFAAKLSMSISEETAEPIPRLATLLHDVPPARLFEEVLKLLQAGDGYQTYLLLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
YNL + L P Y ++
Sbjct: 258 YNLFQPLFPTITRYFTERG 276
>gi|152981224|ref|YP_001354564.1| poly(A) polymerase [Janthinobacterium sp. Marseille]
gi|151281301|gb|ABR89711.1| poly(A) polymerase [Janthinobacterium sp. Marseille]
Length = 455
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 118/218 (54%), Gaps = 8/218 (3%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V L+ GF+A+LVGG VRDLLL PKDFD+ T A +Q++R F R+ IIG+RF I
Sbjct: 44 VTSTLQQAGFKAFLVGGAVRDLLLGVKPKDFDIATNATPEQVKRLFRRAFIIGKRFQIVH 103
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE--TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
V ++EV++F + K+ +L +G D +R RDFTIN++++
Sbjct: 104 VMFGQDLLEVTTFRGASTEAAPKDEHGRVLRDNTFGEQHEDALR------RDFTINAMYY 157
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
DP + DY G++D+R LR + + ED R+LR +R AA+L S D
Sbjct: 158 DPATQTVLDYHGGMADIRNKTLRIIGVPEARYREDPVRMLRVVRFAAKLNFSIDPDTSAP 217
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+ ++ I + +R+ E+ +L G+A + + LR+
Sbjct: 218 IRVMAPLINNVPAARVFDEMLKLLMSGSALACLQQLRK 255
>gi|392552432|ref|ZP_10299569.1| poly(A) polymerase [Pseudoalteromonas spongiae UST010723-006]
Length = 429
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 129/246 (52%), Gaps = 15/246 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R + + VL LK G+ AYLVGGC+RD+LL PKDFDV+T A +QI++QF
Sbjct: 2 VSRKQLSPNALKVLYRLKDAGYDAYLVGGCIRDILLGLEPKDFDVVTNATPEQIKKQFRN 61
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF---ETVAKHGE------GKETVLLSQIPYGCDEID 173
+IGRRF + + +IEV++ + + GE ++ LL YG + D
Sbjct: 62 CRLIGRRFRLAHIMFGREIIEVATMRGHHSDEEQGEKNKSQASEQGQLLRDNVYGTIDED 121
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDF+IN+L++ I+D+A G+ ++ ++ + + ED R+LR
Sbjct: 122 AER------RDFSINALYYSINDFSIHDFAGGMEAIKNRRIELIGDPETRYREDPVRMLR 175
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L ++ + M L+S + + +R+ E+ + G AE++ LLR+Y L
Sbjct: 176 AVRFATKLDMTIAPATEKPMFQLASLLGNIPAARLFEEMLKLFLNGKAEANFHLLRQYGL 235
Query: 294 LKILLP 299
L P
Sbjct: 236 FTYLFP 241
>gi|438000209|ref|YP_007183942.1| poly(A) polymerase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|429339443|gb|AFZ83865.1| poly(A) polymerase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
Length = 417
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 123/234 (52%), Gaps = 13/234 (5%)
Query: 58 SRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIR 117
+ N I + I + + V L+ GF++Y+VGG +RDL+L PKDFDV T A +QI+
Sbjct: 10 NENHNINKINISENAIKVCDTLRKNGFESYIVGGAIRDLILGLRPKDFDVATNATPEQIK 69
Query: 118 RQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYG---CDEIDL 174
F R+ IIGRRF + V +IE+S+F T + + Q +G D
Sbjct: 70 HIFKRARIIGRRFRLVHVIFHKEIIEISTFRT--------SHIDIKQDEFGRILTDNYFG 121
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
+ +S RDFTINSL++D I DY NGI DL+ K+ + A + + ED RILR
Sbjct: 122 SQLEDSTRRDFTINSLYYDTKTETIIDYHNGIHDLKKKKINIIGEASIRYKEDPVRILRA 181
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
+R A+++G S D + + + ++R+ EL +L+ G A CLL
Sbjct: 182 IRFASKIGGSIGHDTLKHIEKQKQLLSNIPQARLFDELIKILTCGNALK--CLL 233
>gi|343509087|ref|ZP_08746382.1| polyA polymerase [Vibrio scophthalmi LMG 19158]
gi|342805844|gb|EGU41091.1| polyA polymerase [Vibrio scophthalmi LMG 19158]
Length = 458
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 121/245 (49%), Gaps = 16/245 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL PKDFD+ T A +QIR F
Sbjct: 29 ISRKQISDNALKVLYRLHGAGFDAFLVGGGVRDLLLGHSPKDFDIATNATPEQIRHLFKN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEIDL 174
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEPSKNVAMQSKEGMLLRDNVYGTIDEDA 146
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTIN+++++ I+DYA G DL +R + + ED R+LR
Sbjct: 147 ER------RDFTINAMYYNIGNFAIHDYARGNEDLEDKLVRLIGDPETRYREDPVRMLRA 200
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L +D + L+ ++ + +R+ E ML G + L+R YNL
Sbjct: 201 IRFAVKLDFDIEEDTAAPIEELAHLLKEIPSARLYEESLKMLQTGYGLETYHLMREYNLF 260
Query: 295 KILLP 299
+ L P
Sbjct: 261 QPLFP 265
>gi|421728233|ref|ZP_16167388.1| poly(A) polymerase I [Klebsiella oxytoca M5al]
gi|410370914|gb|EKP25640.1| poly(A) polymerase I [Klebsiella oxytoca M5al]
Length = 437
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 131/259 (50%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 10 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG T +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTTDRITSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLQDGVVRLIGDPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L +S ++ + L++ + + +R+ E+ +L G + LLR
Sbjct: 181 MLRAVRFAAKLSMSISEETAEPIPRLATLLHDVPPARLFEEVLKLLQAGDGYETYILLRE 240
Query: 291 YNLLKILLPFHAAYLDQQA 309
YNL + L P Y ++
Sbjct: 241 YNLFQPLFPTITRYFTERG 259
>gi|194365293|ref|YP_002027903.1| poly(A) polymerase [Stenotrophomonas maltophilia R551-3]
gi|194348097|gb|ACF51220.1| poly(A) polymerase [Stenotrophomonas maltophilia R551-3]
Length = 461
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 136/288 (47%), Gaps = 13/288 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A +Q+++ F
Sbjct: 35 ISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRN 94
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEG----KETVLLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F + G G + +L+ YG E D +R
Sbjct: 95 CRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAIR-- 152
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + + ED R+LR +R+A
Sbjct: 153 ----RDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLA 208
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+LG + + L+S + +R+ E+ + G +S L RY LL +L
Sbjct: 209 AKLGFQIEEGTAAPIPQLASLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLF 268
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P A L T ML+ N D V+ D P LL
Sbjct: 269 PESAKALKSNR---TGALRRMLVEGLANTDARVANDEPVSPAFLFALL 313
>gi|319944457|ref|ZP_08018731.1| poly(A) polymerase [Lautropia mirabilis ATCC 51599]
gi|319742418|gb|EFV94831.1| poly(A) polymerase [Lautropia mirabilis ATCC 51599]
Length = 488
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 127/248 (51%), Gaps = 7/248 (2%)
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
+ + +++LG++R + + + L+ G+ AY+VGG VRDLLL R PKDFDV T A+
Sbjct: 51 RILSAQSLGLSRQQVSSAALRTCEELQHAGYSAYIVGGGVRDLLLGRAPKDFDVATDASP 110
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-GKETVLLSQIPYGCDEI 172
+ ++ F R+ IIGRRF I V IEV++F +G+ +L+ +G E
Sbjct: 111 EAVQSLFRRARIIGRRFRIVHVMFGRETIEVTTFRAAHTNGQTDAHGRMLNDNVFGTREE 170
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFT+N+L++DP + D G+ DL LR + + ED R+L
Sbjct: 171 DAYR------RDFTVNALYYDPIAETLIDPMGGVDDLSARLLRMIGDPTTRYREDPVRML 224
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R AA+L + +L+ +E + +R+ E+ +L G + + LR
Sbjct: 225 RTVRFAAKLDFQVDPPTLQPIRTLAPLLENVPPARLFDEVMKLLESGHGLACLQRLRHEG 284
Query: 293 LLKILLPF 300
L +LP
Sbjct: 285 LHHGILPL 292
>gi|329896232|ref|ZP_08271410.1| Poly(A) polymerase [gamma proteobacterium IMCC3088]
gi|328921903|gb|EGG29270.1| Poly(A) polymerase [gamma proteobacterium IMCC3088]
Length = 424
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 134/267 (50%), Gaps = 22/267 (8%)
Query: 79 LKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIK 138
L +G++AY+VGG +RD+LL + PKDFDV T A +Q+ F S I+GRRF I V +
Sbjct: 26 LNDKGYEAYVVGGAIRDMLLGKTPKDFDVATNATPEQVHALFRGSRIVGRRFQIVHVRMG 85
Query: 139 GSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINS 189
+IEV++F H E G+ VLL +G E D +R RD T+N+
Sbjct: 86 RDIIEVTTFR--GHHSESDNKNTAKQGRSGVLLRDNVFGTLEQDAIR------RDLTVNA 137
Query: 190 LFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDI 249
L++DP + + DY G+ D+ +L+ + + ED R+LR LR A+LG
Sbjct: 138 LYYDPVEDTVIDYTEGLRDIAARRLKIIGDPETRYREDPVRMLRVLRFQAKLGFDIDSAT 197
Query: 250 DTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ A++ + + ++ +R+ E G A+ +L + + + L P A Y+D +
Sbjct: 198 NQALNDCAPLLAQIPAARLFDEFLKGFMAGHAKPFSEILLQTPVWQELFPDSAQYIDAK- 256
Query: 310 GKITAENPMMLMRLFFNLDKLVSCDRP 336
PM+ + N D+ ++ +P
Sbjct: 257 ---VCYRPMLFAAM-GNTDQRINAGQP 279
>gi|343514800|ref|ZP_08751867.1| polyA polymerase [Vibrio sp. N418]
gi|342799393|gb|EGU34961.1| polyA polymerase [Vibrio sp. N418]
Length = 458
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 121/245 (49%), Gaps = 16/245 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL PKDFD+ T A +QIR F
Sbjct: 29 ISRKQISDNALKVLYRLHGAGFDAFLVGGGVRDLLLGHSPKDFDIATNATPEQIRHLFKN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEIDL 174
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEPSKNVAMQSKEGMLLRDNVYGTIDEDA 146
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTIN+++++ I+DYA G DL +R + + ED R+LR
Sbjct: 147 ER------RDFTINAMYYNIGNFAIHDYARGNEDLEDKLVRLIGDPETRYREDPVRMLRA 200
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L +D + L+ ++ + +R+ E ML G + L+R YNL
Sbjct: 201 IRFAVKLDFDIEEDTAAPIEELAHLLKEIPSARLYEESLKMLQTGYGLETYHLMREYNLF 260
Query: 295 KILLP 299
+ L P
Sbjct: 261 QPLFP 265
>gi|451812412|ref|YP_007448866.1| poly(A) polymerase [Candidatus Kinetoplastibacterium galatii
TCC219]
gi|451778314|gb|AGF49262.1| poly(A) polymerase [Candidatus Kinetoplastibacterium galatii
TCC219]
Length = 422
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 127/245 (51%), Gaps = 7/245 (2%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+D GI + I + + V + L GF+AY+VGG +RDL+L PKDFD+ T A +Q
Sbjct: 21 IDKSKHGINKLNISENAIKVCETLHKNGFEAYIVGGAIRDLILGLKPKDFDIATNATPEQ 80
Query: 116 IRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKH-GEGKETVLLSQIPYGCDEIDL 174
I+ F R+ IIGRRF + V +IE+S+F + + K +L+ +G D
Sbjct: 81 IKYIFKRARIIGRRFRLVHVIFHKEIIEISTFRSSPIDIKQDKFGRILTDNYFGSQSEDS 140
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++D + DY NGI DL+ ++ + A + + ED RILR
Sbjct: 141 TR------RDFTINSLYYDAREETVIDYHNGIYDLKKKQINIIGEASIRYKEDPVRILRA 194
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A+++ S D + I + +SR+ EL +L+ G A + ++ L
Sbjct: 195 IRFASKINGSIGHDTLKYIARQKQLIANIPQSRLFDELIKILTCGNAFKCLMEIKSNKLH 254
Query: 295 KILLP 299
LLP
Sbjct: 255 IFLLP 259
>gi|268591287|ref|ZP_06125508.1| hypothetical protein PROVRETT_07561 [Providencia rettgeri DSM 1131]
gi|291313263|gb|EFE53716.1| polyA polymerase [Providencia rettgeri DSM 1131]
Length = 539
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 127/244 (52%), Gaps = 3/244 (1%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+ I + VL L GF+AYLVGG VRDLLL + PKDFD+ T A +QIR+ F
Sbjct: 110 ISRSDISDNALKVLYRLNKSGFEAYLVGGGVRDLLLGQKPKDFDITTNATPEQIRKLFRN 169
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGC---DEIDLVRWRN 179
++GRRF + + +IEV++F + L +Q G D I +
Sbjct: 170 CRLVGRRFRLAHIMFGPEIIEVATFRGHHDQNVSDDKNLSAQAQNGMLLRDNIFGSIEED 229
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
+I RDFT+NSL+++ + DY NG+ DL+ +R + + ED R+LR +R A
Sbjct: 230 AIRRDFTVNSLYYNIEDFTLRDYVNGLKDLKAGVIRLIGDPETRYREDPVRMLRAVRFAC 289
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+L +S ++ L+ + + +R+ E +L G ++ +L++Y L + L P
Sbjct: 290 KLNMSIEPKTAEPIYQLAHLLREIPSARLFEESLKLLQAGQGYATYKMLKKYGLFEQLFP 349
Query: 300 FHAA 303
A+
Sbjct: 350 VVAS 353
>gi|350551925|ref|ZP_08921135.1| poly(A) polymerase [Thiorhodospira sibirica ATCC 700588]
gi|349795855|gb|EGZ49648.1| poly(A) polymerase [Thiorhodospira sibirica ATCC 700588]
Length = 465
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 128/247 (51%), Gaps = 16/247 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+RA I + + VL LK GF+A LVGG VRDLLL R PKDFD+ T A+ +Q+R+ F
Sbjct: 31 ISRAQINEHALKVLYKLKDAGFRACLVGGGVRDLLLGREPKDFDIATDAHPEQVRQIFRN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA--KHGEGK--------ETVLLSQIPYGCDEI 172
+IGRRF + V +IEV++F +H +GK + ++ YG E
Sbjct: 91 CRLIGRRFRLAHVFFGREIIEVATFRAALGDEHTDGKPRSGALLEDGRIIRDNVYGTIEQ 150
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D WR RDF++N+L++D + DY G+ DL+ LR + + F ED R+L
Sbjct: 151 DA--WR----RDFSVNALYYDISTFSVLDYTGGMDDLKRGVLRLIGDPAVRFREDPVRLL 204
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R AA+LG + + L ++ + +R+ E + G + +LR Y+
Sbjct: 205 RAVRFAAKLGFKLDPATEYHLPRLGYLLDDVSPARLFDEAIKLFQGGYGVQTFEMLRHYD 264
Query: 293 LLKILLP 299
L L P
Sbjct: 265 LFCCLFP 271
>gi|212213205|ref|YP_002304141.1| poly(A) polymerase [Coxiella burnetii CbuG_Q212]
gi|212011615|gb|ACJ18996.1| poly(A) polymerase [Coxiella burnetii CbuG_Q212]
Length = 438
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 136/264 (51%), Gaps = 16/264 (6%)
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
+ + +N I+R+ I + VL L G++AYLVGG VRD+LL PKDFD+ T A
Sbjct: 24 RVIKRKNHSISRSDISPNALRVLYRLSKSGYEAYLVGGGVRDMLLSYHPKDFDIATNARP 83
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF----------ETVAKHGEGKETVLLS 163
+IR+ F S +IGRRF + V+ +IEVS+F E +++ + T+L
Sbjct: 84 HEIRKLFKNSRLIGRRFRLVHVYFPNEIIEVSTFRANAEELLKEEPLSEMQKTGATMLSE 143
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D WR RDFT+N+L+++ + D+ G+ DL +R +
Sbjct: 144 DNTYGTIEEDA--WR----RDFTVNALYYNITDFSVIDFTGGMRDLHQRLIRMIGDPTQR 197
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R+AA+L D + + L + + + +R+ E+ + G A
Sbjct: 198 YHEDPVRLLRAIRLAAKLDFKIHPDTEEPLKKLHNLLRHVPSARLFTEVLKIFFEGHAVR 257
Query: 284 SICLLRRYNLLKILLPFHAAYLDQ 307
S LL++ + ++ L P A L++
Sbjct: 258 SYQLLKQTHYMRTLFPESATILEK 281
>gi|423127444|ref|ZP_17115123.1| Poly(A) polymerase [Klebsiella oxytoca 10-5250]
gi|376394483|gb|EHT07133.1| Poly(A) polymerase [Klebsiella oxytoca 10-5250]
Length = 454
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 131/259 (50%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG T +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTTDRITSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLQDGVVRLIGDPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L +S ++ + L++ + + +R+ E+ +L G + LLR
Sbjct: 198 MLRAVRFAAKLSMSISEETAEPIPRLATLLHDVPPARLFEEVLKLLQAGDGYETYILLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
YNL + L P Y ++
Sbjct: 258 YNLFQPLFPTITRYFTERG 276
>gi|377578690|ref|ZP_09807666.1| poly(A) polymerase [Escherichia hermannii NBRC 105704]
gi|377540003|dbj|GAB52831.1| poly(A) polymerase [Escherichia hermannii NBRC 105704]
Length = 454
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 129/256 (50%), Gaps = 14/256 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF-----ETV---AKHGEGKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F E V A G+ +LL +G E D
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEENVNDRAISQRGQNGMLLRDNIFGSIEED 146
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G+ DL+ +R + + ED R+LR
Sbjct: 147 AQR------RDFTINSLYYSVADFTVRDYVGGLQDLKLGIIRLIGDPETRYREDPVRMLR 200
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AARL + + + L++ + + +R+ E +L G ++ LLR Y+L
Sbjct: 201 AVRFAARLDMKISPETGEPIPRLATLLNDVPPARLFEESLKLLQMGYGYNTYLLLREYSL 260
Query: 294 LKILLPFHAAYLDQQA 309
+ L P + +Q
Sbjct: 261 FQPLFPTITRFFTEQG 276
>gi|407940399|ref|YP_006856040.1| poly(A) polymerase [Acidovorax sp. KKS102]
gi|407898193|gb|AFU47402.1| poly(A) polymerase [Acidovorax sp. KKS102]
Length = 532
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 138/262 (52%), Gaps = 23/262 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V++ LK GF+AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 36 GINPELVDRRAAEVVQTLKDAGFEAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFR 95
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKETVLLSQIPYGCDEI 172
R+ IIG+RF I VH +G VIEVS+F + A G E +Q+ +
Sbjct: 96 RAFIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNSAAGQVSGNEKTSKAQLAGMQHAV 155
Query: 173 D----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D ++R W ++ RDFT+N++++DP + DY GI D + LR +
Sbjct: 156 DASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPVSQIVVDYHKGIQDAKKKTLRMIGDPA 215
Query: 222 LSFTEDCARILRGLRIAARLG-LSFCKDIDTAMHSLSSS--IERLDKSRIMMELNYMLSY 278
+ ED RI+R +R AA+L L F D +A + S + + +SR+ E+ +L
Sbjct: 216 TRYREDPVRIIRAVRFAAKLSPLGFTIDAKSAAPLVQSQALLAEVPQSRMFDEMLKLLQT 275
Query: 279 GAAESSICLLRRYNLLKILLPF 300
G A ++I L++ + K + P
Sbjct: 276 GHAIATIEQLKKLGMAKGIYPL 297
>gi|241766688|ref|ZP_04764530.1| poly(A) polymerase [Acidovorax delafieldii 2AN]
gi|241362988|gb|EER58669.1| poly(A) polymerase [Acidovorax delafieldii 2AN]
Length = 526
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 137/262 (52%), Gaps = 23/262 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V+ LK GF+AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 36 GINPELVDRRAAEVVATLKQAGFEAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFR 95
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKETVLLSQIPYGCDEI 172
R+ IIG+RF I VH +G VIEVS+F + A G E +Q+ +
Sbjct: 96 RAFIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNSAAGQVSGNEKTSKAQLSGMQHAV 155
Query: 173 D----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D ++R W ++ RDFT+N++++DP + DY G+ D + LR +
Sbjct: 156 DASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPVSQIVVDYHKGLQDAKKKTLRMIGDPA 215
Query: 222 LSFTEDCARILRGLRIAARL-GLSFCKDIDTAMHSLSSS--IERLDKSRIMMELNYMLSY 278
+ ED RI+R +R AA+L L F D TA + S ++ + +SR+ E+ +L
Sbjct: 216 TRYREDPVRIIRAVRFAAKLSALGFTLDAKTAAPLVQSQQLLQDVPQSRMFDEMLKLLQT 275
Query: 279 GAAESSICLLRRYNLLKILLPF 300
G A ++I LR+ + + P
Sbjct: 276 GHAIATIAQLRKLGMATGIYPL 297
>gi|339053302|ref|ZP_08648041.1| Poly(A) polymerase [gamma proteobacterium IMCC2047]
gi|330721489|gb|EGG99534.1| Poly(A) polymerase [gamma proteobacterium IMCC2047]
Length = 435
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 122/238 (51%), Gaps = 5/238 (2%)
Query: 72 SWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFP 131
+ ++ L GF+AYLVGGC+RDLLL PKDFD+ T A + I + F R+ IIGRRF
Sbjct: 28 AMTAVQTLLDAGFKAYLVGGCIRDLLLGMKPKDFDISTNARPEDILKLFKRARIIGRRFR 87
Query: 132 ICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGC---DEIDLVRWRNSIHRDFTIN 188
I V+ ++E+++F H E + S+ G D I +++ RDFT N
Sbjct: 88 IVHVYFGREMLEITTFR--GHHPEDDDHPHASRSENGQLLRDNIYGTASEDALRRDFTAN 145
Query: 189 SLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKD 248
+L++D N + DYANG D++ LR + + ED R+LR LR A +LG
Sbjct: 146 ALYYDIQDNTVLDYANGYEDIQNRILRIIGDPEKRYREDPVRMLRALRFAGKLGFDIEAK 205
Query: 249 IDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLD 306
+H L + + +R+ E + G ++ L+ Y+L + L PF +L+
Sbjct: 206 TAAPIHELGDLLSNIPAARLFDESLKVFLSGYGSKTLPLMIDYDLFRQLYPFTDEHLE 263
>gi|451813135|ref|YP_007449588.1| poly(A) polymerase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|451779104|gb|AGF49984.1| poly(A) polymerase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 430
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 123/234 (52%), Gaps = 13/234 (5%)
Query: 58 SRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIR 117
+ N I + I + + V L+ GF++Y+VGG +RDL+L PKDFDV T A +QI+
Sbjct: 23 NENHNINKINISENAIKVCDTLRKNGFESYIVGGAIRDLILGLRPKDFDVATNATPEQIK 82
Query: 118 RQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYG---CDEIDL 174
F R+ IIGRRF + V +IE+S+F T + + Q +G D
Sbjct: 83 HIFKRARIIGRRFRLVHVIFHKEIIEISTFRT--------SHIDIKQDEFGRILTDNYFG 134
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
+ +S RDFTINSL++D I DY NGI DL+ K+ + A + + ED RILR
Sbjct: 135 SQLEDSTRRDFTINSLYYDTKTETIIDYHNGIHDLKKKKINIIGEASIRYKEDPVRILRA 194
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
+R A+++G S D + + + ++R+ EL +L+ G A CLL
Sbjct: 195 IRFASKIGGSIGHDTLKHIEKQKQLLSNIPQARLFDELIKILTCGNALK--CLL 246
>gi|29653638|ref|NP_819330.1| poly(A) polymerase [Coxiella burnetii RSA 493]
gi|153208652|ref|ZP_01946904.1| poly(A) polymerase [Coxiella burnetii 'MSU Goat Q177']
gi|161829839|ref|YP_001596236.1| poly(A) polymerase [Coxiella burnetii RSA 331]
gi|165919793|ref|ZP_02219536.1| poly(A) polymerase [Coxiella burnetii Q321]
gi|212218121|ref|YP_002304908.1| poly(A) polymerase [Coxiella burnetii CbuK_Q154]
gi|29540900|gb|AAO89844.1| poly(A) polymerase [Coxiella burnetii RSA 493]
gi|120575838|gb|EAX32462.1| poly(A) polymerase [Coxiella burnetii 'MSU Goat Q177']
gi|161761706|gb|ABX77348.1| poly(A) polymerase [Coxiella burnetii RSA 331]
gi|165916876|gb|EDR35480.1| poly(A) polymerase [Coxiella burnetii Q321]
gi|212012383|gb|ACJ19763.1| poly(A) polymerase [Coxiella burnetii CbuK_Q154]
Length = 439
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 136/264 (51%), Gaps = 16/264 (6%)
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
+ + +N I+R+ I + VL L G++AYLVGG VRD+LL PKDFD+ T A
Sbjct: 24 RVIKRKNHSISRSDISPNALRVLYRLSKSGYEAYLVGGGVRDMLLSYHPKDFDIATNARP 83
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF----------ETVAKHGEGKETVLLS 163
+IR+ F S +IGRRF + V+ +IEVS+F E +++ + T+L
Sbjct: 84 HEIRKLFKNSRLIGRRFRLVHVYFPNEIIEVSTFRANAEELLKEEPLSEMQKTGATMLSE 143
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D WR RDFT+N+L+++ + D+ G+ DL +R +
Sbjct: 144 DNTYGTIEEDA--WR----RDFTVNALYYNITDFSVIDFTGGMRDLHQRLIRMIGDPTQR 197
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R+AA+L D + + L + + + +R+ E+ + G A
Sbjct: 198 YHEDPVRLLRAIRLAAKLDFKIHPDTEEPLKKLHNLLRHVPSARLFTEVLKIFFEGHAVR 257
Query: 284 SICLLRRYNLLKILLPFHAAYLDQ 307
S LL++ + ++ L P A L++
Sbjct: 258 SYQLLKQTHYMRTLFPEAATILEK 281
>gi|415910427|ref|ZP_11553292.1| Poly(A) polymerase, partial [Herbaspirillum frisingense GSF30]
gi|407762406|gb|EKF71260.1| Poly(A) polymerase, partial [Herbaspirillum frisingense GSF30]
Length = 445
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 8/231 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A++ + V + L+ G++A++VGG VRDLLL PKDFDV T A +Q+++ F
Sbjct: 50 GIDPALVSPNAVRVTQTLQDAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFR 109
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE--TVLLSQIPYGCDEIDLVRWRN 179
R+ IIGRRF I V +IEV++F + K+ +L +G D R
Sbjct: 110 RAFIIGRRFQIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATR--- 166
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFTIN++++DP + DY GI+D+R KLR + + ED R+LR +R AA
Sbjct: 167 ---RDFTINAMYYDPASQTVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAA 223
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+L S + ++ I+ + +R+ E+ +L G A + + LR+
Sbjct: 224 KLKFSIDPASSAPIRVMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRK 274
>gi|323495885|ref|ZP_08100953.1| poly(A) polymerase [Vibrio sinaloensis DSM 21326]
gi|323319101|gb|EGA72044.1| poly(A) polymerase [Vibrio sinaloensis DSM 21326]
Length = 454
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 123/251 (49%), Gaps = 16/251 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + VL L GF AYLVGG VRD LL + PKDFD+ T A +QIR+ F
Sbjct: 31 VSRKKISDNALKVLYRLHGAGFDAYLVGGGVRDSLLGQQPKDFDIATNATPEQIRQLFKN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEIDL 174
+IGRRF + + +IEV++F H E KE +LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEPSKNVSQQSKEGMLLRDNVYGTIDEDA 148
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTIN++++ I+DYA GI DL +R + + ED R+LR
Sbjct: 149 ER------RDFTINAMYYSIADYSIHDYAGGIEDLEDKLVRLIGDPETRYREDPVRMLRA 202
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L +D + ++ + + +R+ E ML G + L+R YNL
Sbjct: 203 IRFAVKLDFDIEEDTAAPIEDMAVLLRDIPPARLYEESLKMLQSGHGLETYHLMREYNLF 262
Query: 295 KILLPFHAAYL 305
+ L P A +
Sbjct: 263 QQLFPTIAEFF 273
>gi|386827875|ref|ZP_10114982.1| poly(A) polymerase [Beggiatoa alba B18LD]
gi|386428759|gb|EIJ42587.1| poly(A) polymerase [Beggiatoa alba B18LD]
Length = 502
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 142/279 (50%), Gaps = 22/279 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + + VL L+S GFQAY+VGG VRD+LL + PKDFDV+T A +Q++ F
Sbjct: 50 LSRKHISKSALKVLYQLQSAGFQAYIVGGGVRDVLLGKQPKDFDVVTNALPEQVKGVFRN 109
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKH-GEGKETV-----LLSQIPYGCDEIDLVR 176
+IGRRF + V+ ++EV++F H EG E V ++ YG +D
Sbjct: 110 CRLIGRRFVLAHVYFGQEIVEVATFRASHHHQSEGNERVIEDGRIVRDNMYGT-TVD--- 165
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
++ RDFT N+L++D I DYA G++DL +R + L + ED R+LR +R
Sbjct: 166 -EDANRRDFTFNALYYDISDFSILDYAKGMADLEAGIVRLIGDPMLRYQEDPVRMLRAVR 224
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
AA+L + + L + + +R+ E+ + G S LR+Y+L +
Sbjct: 225 FAAKLDFTIEASAAEPIPQLGGLLADVPSARLYDEVLKLFLSGHGLKSFRYLRQYHLFE- 283
Query: 297 LLPFHAAYLDQQAGKITAENP---MMLMRLFFNLDKLVS 332
+L QQ ENP M+ ++ N D+ V+
Sbjct: 284 -------HLFQQTHDCMLENPKVLAMIEQVLSNTDERVA 315
>gi|298368846|ref|ZP_06980164.1| poly(A) polymerase [Neisseria sp. oral taxon 014 str. F0314]
gi|298282849|gb|EFI24336.1| poly(A) polymerase [Neisseria sp. oral taxon 014 str. F0314]
Length = 453
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 6/229 (2%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ L ++GF+AY+VGG VRDLLL PKDFDV T A +++R+ F RS IIGRRF I
Sbjct: 43 VVRRLHNEGFEAYVVGGAVRDLLLGIEPKDFDVATNATPEEVRKIFRRSRIIGRRFQIVH 102
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDP 194
V + IEV++F K + + ++ YG E D +R RDFT N+L++DP
Sbjct: 103 VMVGPETIEVTTFRGGGKVVQNQHGRIMKDNNYGSMEEDAMR------RDFTCNALYYDP 156
Query: 195 FLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMH 254
I D+ +G +D++ KL + + ED RILR +R++ +LG + +
Sbjct: 157 IRRLIVDFHHGAADVQAKKLVMIGNPAERYQEDPVRILRAVRLSGKLGFEVEEHTAAPIP 216
Query: 255 SLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303
+ +++ SR+ E+ +L G A + L + + + P A
Sbjct: 217 EYAGRLKQEPVSRLFDEILKLLFSGHARDCLQQLNKLGIGSDIHPLLTA 265
>gi|289164882|ref|YP_003455020.1| poly(A) polymerase [Legionella longbeachae NSW150]
gi|288858055|emb|CBJ11915.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
longbeachae NSW150]
Length = 438
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 116/229 (50%), Gaps = 10/229 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL L GFQAY+VGG VRDLLL + PKDFDV T A Q++ F IIGRRF +
Sbjct: 37 VLNRLIGAGFQAYIVGGSVRDLLLHKAPKDFDVATNATPNQVKSLFRNGRIIGRRFKLVH 96
Query: 135 VHIKGSVIEVSSFETVAKHGEGKET----VLLSQIPYGCDEIDLVRWRNSIHRDFTINSL 190
+ +IEV++F + E + T +L+ YG +D WR RDFTINSL
Sbjct: 97 ILFHREIIEVATFRSHVALDENQVTNERGMLVRDNAYGS--LDEDAWR----RDFTINSL 150
Query: 191 FFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDID 250
+++ + I D+ G+ D+ +R + + ED R+LR +R +A+L +
Sbjct: 151 YYNINDSSIIDFTGGVKDVEKRLIRMIGDPIKRYQEDPVRMLRAIRFSAKLNFKLAAETA 210
Query: 251 TAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+S I + SR+ E+ + G AE+ LL +Y L L P
Sbjct: 211 APFPEISHLITHVSNSRLFDEMTKLYQCGNAETVQKLLIQYGLFGHLFP 259
>gi|190573757|ref|YP_001971602.1| poly(A) polymerase [Stenotrophomonas maltophilia K279a]
gi|424668174|ref|ZP_18105199.1| poly(A) polymerase [Stenotrophomonas maltophilia Ab55555]
gi|190011679|emb|CAQ45298.1| putative poly(A) polymerase [Stenotrophomonas maltophilia K279a]
gi|401068436|gb|EJP76960.1| poly(A) polymerase [Stenotrophomonas maltophilia Ab55555]
gi|456734161|gb|EMF58983.1| Poly(A) polymerase [Stenotrophomonas maltophilia EPM1]
Length = 461
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 135/288 (46%), Gaps = 13/288 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A +Q+++ F
Sbjct: 35 ISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRN 94
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEG----KETVLLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F + G G + +L+ YG E D VR
Sbjct: 95 CRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAVR-- 152
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + + ED R+LR +R+A
Sbjct: 153 ----RDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLA 208
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+LG + + L+ + +R+ E+ + G +S L RY LL +L
Sbjct: 209 AKLGFQIEEGTAAPIPQLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLF 268
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P A L T ML+ N D V+ D P LL
Sbjct: 269 PESARALKSNR---TGALRRMLVEGLANTDARVANDEPVSPAFLFALL 313
>gi|107021834|ref|YP_620161.1| poly(A) polymerase [Burkholderia cenocepacia AU 1054]
gi|105892023|gb|ABF75188.1| poly(A) polymerase [Burkholderia cenocepacia AU 1054]
Length = 518
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 31/254 (12%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A+I + + V L+ GF+A++VGG VRDLLL PKDFDV T A +++R F
Sbjct: 62 GINPALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFR 121
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-------------------------KHGEG 156
R+ +IGRRF I V +IEVS+F + H
Sbjct: 122 RARLIGRRFQIVHVQFGQDLIEVSTFRALVDAPPEAAAATAEPPRRLKRDELDRRTHAVD 181
Query: 157 KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
+L +G D R RDFTIN++++DP + DY +G++D+R LR
Sbjct: 182 ASGRVLRDNVWGEQHEDAAR------RDFTINAMYYDPSTQTVLDYHDGMADVRARLLRM 235
Query: 217 LIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ F ED R+LR +R AA+LG +H+L+ I + +R+ E+ +L
Sbjct: 236 IGDPATRFREDPVRMLRVVRFAAKLGFEIEPHTREPIHALADLINNVPAARLFDEMLKLL 295
Query: 277 SYGAAESSICLLRR 290
G A + + LR+
Sbjct: 296 LSGHALARLQRLRK 309
>gi|377819870|ref|YP_004976241.1| poly(A) polymerase [Burkholderia sp. YI23]
gi|357934705|gb|AET88264.1| poly(A) polymerase [Burkholderia sp. YI23]
Length = 525
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 134/266 (50%), Gaps = 16/266 (6%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++I + + V + L+ G +A++VGG VRDLLL PKDFDV T Q+++ F
Sbjct: 66 GIDPSLISKNAVRVTEGLQHAGHRAFIVGGAVRDLLLGVAPKDFDVATDGTPDQVQKLFR 125
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA--------------KHGE--GKETVLLSQI 165
R+ IIGRRF I V +IE S+F + K GE G+ + +
Sbjct: 126 RARIIGRRFQIVHVQFGQEIIETSTFRALMDVPPEPSAEPPRRLKRGELDGRTHAVDASG 185
Query: 166 PYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFT 225
D + + ++ RDFTIN++++DP + DY +G++D+R LR + +
Sbjct: 186 RVLRDNVWGEQHEDATRRDFTINAMYYDPATQTVLDYHDGMADIRARLLRMIGDPATRYR 245
Query: 226 EDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285
ED R+LR +R AA+LG + + L+ + + +R+ E+ +L G A + +
Sbjct: 246 EDPVRMLRVVRFAAKLGFEIDEATRAPIKDLADLMNNVPAARLFDEMLKLLLSGHALACL 305
Query: 286 CLLRRYNLLKILLPFHAAYLDQQAGK 311
LR+ L +LP L+Q G+
Sbjct: 306 TRLRQEGLHHGVLPLLDVVLEQPHGE 331
>gi|253988289|ref|YP_003039645.1| poly(A) polymerase [Photorhabdus asymbiotica]
gi|253779739|emb|CAQ82900.1| poly(A) polymerase [Photorhabdus asymbiotica]
Length = 523
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 163/343 (47%), Gaps = 39/343 (11%)
Query: 36 CREMCSDSFNQEVDVSNWK-----TVDSR-NLGITRAMIPQPSWVVLKILKSQGFQAYLV 89
C+ S + +EV+ N TV SR I+R I + + VL L GF AYLV
Sbjct: 62 CQLSSSVNAQEEVEQENLHSDLPITVISREQHNISRRDISENALKVLYRLNKSGFDAYLV 121
Query: 90 GGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF-- 147
GG VRDLLL PKDFD+ T A +Q+R+ F ++GRRF + + VIEV++F
Sbjct: 122 GGGVRDLLLGTKPKDFDIATNATPEQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRG 181
Query: 148 ---ETVAKH-----GEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKI 199
+T A + + + +LL +G E D +R RDFTINSL++ +
Sbjct: 182 PHEQTDANNEKNQSQQAQSGMLLRDNTFGSIEEDAMR------RDFTINSLYYGINDFSL 235
Query: 200 YDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSS 259
DY G++DL +R + + ED R+LR +R A++L ++ +D + L+
Sbjct: 236 RDYVGGLNDLETGVIRLIGDPETRYREDPVRMLRAIRFASKLNMTISEDTAEPISRLAFL 295
Query: 260 IERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAEN--P 317
+ + +R+ E +L G S+ LR Y+L + L P Y TA N P
Sbjct: 296 LSHIPPARLFEESLKLLQTGQGYSTYKRLREYHLFQPLFPLVERYF-------TANNDSP 348
Query: 318 M--MLMRLFFNLDKLVSCDR---PA---DYTLWVGLLSFHQAL 352
M ML ++ N D + D+ PA LW L+ + L
Sbjct: 349 MEHMLNQVLKNTDYRLQNDKRVNPAFLFAAMLWYPLIEHAEKL 391
>gi|414561823|ref|NP_716503.2| polyA polymerase PcnB [Shewanella oneidensis MR-1]
gi|410519568|gb|AAN53948.2| polyA polymerase PcnB [Shewanella oneidensis MR-1]
Length = 478
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 147/297 (49%), Gaps = 23/297 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GFQAYLVGG VRDLLL PKDFDV+T A ++I++ F
Sbjct: 51 ISRKQISENALKVLYRLNKAGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRN 110
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEIDL 174
++GRRF + + VIEV++F HGE E + LL YG EID
Sbjct: 111 CRVVGRRFRLAHIVFGRDVIEVATFR--GHHGESNEKISKANAEGRLLRDNVYG--EID- 165
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDFT+N+L++D I Y G+ DL+ LR + + ED R+LR
Sbjct: 166 ---EDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVRMLRA 222
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L ++ + + L+ ++ + +R+ E+ + G A ++ +++ Y L
Sbjct: 223 VRFATKLSMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAVANFDMMQEYKLF 282
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLM--RLFFNLDKLVSCDRPADYTLWVGLLSFH 349
L P A L K + P M M + + D V+ D+P + + + ++
Sbjct: 283 APLFPQVDALL-----KEAPKGPAMKMVQAIMKSTDDRVNEDKPVTPSFFYAAILWY 334
>gi|312883975|ref|ZP_07743692.1| polyA polymerase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368433|gb|EFP95968.1| polyA polymerase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 451
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 129/261 (49%), Gaps = 16/261 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRDLLL + PKDFD+ T A +QIR+ F
Sbjct: 29 ISRKKISDNALKVLYRLHGAGFDAFLVGGGVRDLLLGQNPKDFDIATNATPEQIRQLFKN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEIDL 174
+IGRRF + + +IEV++F H E K+ +LL YG + D
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQEPSKNVSQQSKDGMLLRDNVYGSIDEDA 146
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+++++ I+DYA+G+ DL +R + + ED R+LR
Sbjct: 147 ER------RDFTVNAMYYNIGDYSIHDYASGVEDLEDKLVRLIGDPETRYREDPVRMLRA 200
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L +D + L+ ++ + +R+ E ML G + L+R Y L
Sbjct: 201 IRFAVKLDFDIEEDTAEPIERLALLLQDIPAARLYEESLKMLQSGYGLETYHLMREYGLF 260
Query: 295 KILLPFHAAYLDQQAGKITAE 315
+ L P A Y +T +
Sbjct: 261 QQLFPTIAEYFTDDYSSMTEQ 281
>gi|167854734|ref|ZP_02477513.1| putative poly(A) polymerase [Haemophilus parasuis 29755]
gi|167854148|gb|EDS25383.1| putative poly(A) polymerase [Haemophilus parasuis 29755]
Length = 477
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 140/275 (50%), Gaps = 22/275 (8%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T + + GI+ P + ++ L+ G++AY+VGGC+RDLLL + KDFD+ T A +
Sbjct: 36 TQPAGHYGISPKDFPSNTIAIINKLQKNGYEAYMVGGCIRDLLLGQKAKDFDIATNARPE 95
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQ 164
+I++ F R +IGRRF + + + EV++F E ++K E +LL
Sbjct: 96 EIQKIFGRQCRLIGRRFRLAHIVFGREIYEVATFRADHHSNATEKMSKTSEA--GMLLRD 153
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
YG D R RDF++N+ ++D N IYD+ NGI DL+ KL + +
Sbjct: 154 NVYGTLREDAER------RDFSVNAFYYDVSHNLIYDFFNGIDDLKAGKLALIGDPVTRY 207
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R A+L + K D + ++ ++ + +R+ E +L G +
Sbjct: 208 QEDPVRMLRAIRFMAKLDMFLDKASDEPIRKMAVLLKNIPAARLFDESLKLLQSGYGHKT 267
Query: 285 ICLLRRYNLLK----ILLPFHAAYLDQQAGKITAE 315
LLR+Y L + +L PF Y D + ++ ++
Sbjct: 268 YELLRKYGLFEQLFPVLSPFFTEYGDSNSERMISK 302
>gi|170732080|ref|YP_001764027.1| poly(A) polymerase [Burkholderia cenocepacia MC0-3]
gi|169815322|gb|ACA89905.1| poly(A) polymerase [Burkholderia cenocepacia MC0-3]
Length = 518
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 31/254 (12%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A+I + + V L+ GF+A++VGG VRDLLL PKDFDV T A +++R F
Sbjct: 62 GINPALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFR 121
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-------------------------KHGEG 156
R+ +IGRRF I V +IEVS+F + H
Sbjct: 122 RARLIGRRFQIVHVQFGQDLIEVSTFRALVDAPPEAAAATAEPPRRLKRDELDRRTHAVD 181
Query: 157 KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
+L +G D R RDFTIN++++DP + DY +G++D+R LR
Sbjct: 182 ASGRVLRDNVWGEQHEDAAR------RDFTINAMYYDPSTQTVLDYHDGMADVRARLLRM 235
Query: 217 LIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ F ED R+LR +R AA+LG +H+L+ I + +R+ E+ +L
Sbjct: 236 IGDPATRFREDPVRMLRVVRFAAKLGFEIEPHTREPIHALADLINNVPAARLFDEMLKLL 295
Query: 277 SYGAAESSICLLRR 290
G A + + LR+
Sbjct: 296 LSGHALACLQRLRK 309
>gi|90412020|ref|ZP_01220027.1| putative polyA polymerase [Photobacterium profundum 3TCK]
gi|90326998|gb|EAS43377.1| putative polyA polymerase [Photobacterium profundum 3TCK]
Length = 449
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 156/335 (46%), Gaps = 47/335 (14%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R I + + VL L G+ AYLVGG VRDLLL + PKDFD+ T A ++I+ F
Sbjct: 10 GISRKDISENALKVLYRLNKGGYDAYLVGGGVRDLLLHKQPKDFDIATNATPEEIKSLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEG----------------------KET 159
+IGRRF + + VIEV++F H + +E
Sbjct: 70 NCRLIGRRFRLAHILFGRDVIEVATFR--GHHSDAPVKVEIKDKADAKGKQQISSKSQEG 127
Query: 160 VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIP 219
+LL YG + D R RDFTIN++++ + DYANG+ DL +R +
Sbjct: 128 MLLRDNVYGTIDEDAER------RDFTINAMYYSAKDFTVTDYANGVEDLNNRIVRLMGD 181
Query: 220 AYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYG 279
+ ED R+LR +R AA+L ++ + + L+ + + +R+ E +L G
Sbjct: 182 PETRYREDPVRMLRAVRFAAKLDMTIEEKTAAPIEELAPLLRDIPSARLFEESLKLLQAG 241
Query: 280 AAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR---P 336
++ LLR+YNL + L P A + + +++ M+ + DK ++ D+ P
Sbjct: 242 QGLATYKLLRQYNLFQQLFPILADHFTEDH---SSQTEQMIEHILAATDKRIAEDKRVNP 298
Query: 337 A---DYTLWVGL------LSFHQALVSDPQDAFVV 362
A LW L +SF L DAF+V
Sbjct: 299 AFIYAAMLWYPLTTRAEEISFASGLAF--YDAFMV 331
>gi|116688781|ref|YP_834404.1| poly(A) polymerase [Burkholderia cenocepacia HI2424]
gi|254246247|ref|ZP_04939568.1| Poly(A) polymerase [Burkholderia cenocepacia PC184]
gi|116646870|gb|ABK07511.1| poly(A) polymerase [Burkholderia cenocepacia HI2424]
gi|124871023|gb|EAY62739.1| Poly(A) polymerase [Burkholderia cenocepacia PC184]
Length = 518
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 31/254 (12%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A+I + + V L+ GF+A++VGG VRDLLL PKDFDV T A +++R F
Sbjct: 62 GINPALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFR 121
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-------------------------KHGEG 156
R+ +IGRRF I V +IEVS+F + H
Sbjct: 122 RARLIGRRFQIVHVQFGQDLIEVSTFRALVDAPPEAAAATAEPPRRLKRDELDRRTHAVD 181
Query: 157 KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
+L +G D R RDFTIN++++DP + DY +G++D+R LR
Sbjct: 182 ASGRVLRDNVWGEQHEDAAR------RDFTINAMYYDPSTQTVLDYHDGMADVRARLLRM 235
Query: 217 LIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ F ED R+LR +R AA+LG +H+L+ I + +R+ E+ +L
Sbjct: 236 IGDPATRFREDPVRMLRVVRFAAKLGFEIEPHTREPIHALADLINNVPAARLFDEMLKLL 295
Query: 277 SYGAAESSICLLRR 290
G A + + LR+
Sbjct: 296 LSGHALACLQRLRK 309
>gi|400405256|ref|YP_006588115.1| poly(A) polymerase [secondary endosymbiont of Ctenarytaina
eucalypti]
gi|400363619|gb|AFP84687.1| poly(A) polymerase [secondary endosymbiont of Ctenarytaina
eucalypti]
Length = 457
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 156/331 (47%), Gaps = 38/331 (11%)
Query: 55 TVDSRNL-GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
T+ RN I+R I + VL L G++AYLVGG VRDLLL + PKDFD+ T A
Sbjct: 42 TIIPRNQHSISRKEISANALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATP 101
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF-----------ETVAKHGEGKETVLL 162
+Q+R+ F ++GRRF + V +IEV++F E+V +LL
Sbjct: 102 EQMRKLFRNCRLVGRRFRLAHVMFGSEIIEVATFRGHHQVLEAKGESVVAALTDHNGMLL 161
Query: 163 SQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 222
+G E D R RDF++NSL++ + DY G+ DLR LR +
Sbjct: 162 RDNIFGSIEEDAER------RDFSVNSLYYSLADFTLRDYTGGLKDLREGTLRLIGDPET 215
Query: 223 SFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAE 282
+ ED R+LR +R AA+L +S + + L++ + + +R++ + +L G +
Sbjct: 216 RYREDPVRMLRAVRFAAKLKMSISHETAEPIPRLAALLRDIPPARLLEKALKLLQAGYGQ 275
Query: 283 SSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLW 342
+S LLR Y L++ L P + + GK E+ M+ R+ N D+
Sbjct: 276 ASYRLLREYQLVQPLFPLISRNFTEH-GKSYMEH--MVTRVLANTDQ------------- 319
Query: 343 VGLLSFHQALVSDPQDAFVVWVFASVLYHGK 373
FH + +P F ++ +L H +
Sbjct: 320 ----CFHNNMQINPALLFAAMLWYPLLEHAR 346
>gi|409404506|ref|ZP_11252985.1| tRNA nucleotidyltransferase/poly(A) polymerase [Herbaspirillum sp.
GW103]
gi|386436025|gb|EIJ48848.1| tRNA nucleotidyltransferase/poly(A) polymerase [Herbaspirillum sp.
GW103]
Length = 537
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 8/231 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A++ + V + L+ G++A++VGG VRDLLL PKDFDV T A +Q+++ F
Sbjct: 49 GIDPALVSPNAVRVTQTLQEAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFR 108
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE--TVLLSQIPYGCDEIDLVRWRN 179
R+ IIGRRF I V +IEV++F + K+ +L +G D R
Sbjct: 109 RAFIIGRRFQIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATR--- 165
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFTIN++++DP + DY GI+D+R KLR + + ED R+LR +R AA
Sbjct: 166 ---RDFTINAMYYDPASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAA 222
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+L + + ++ I+ + +R+ E+ +L G A + + LR+
Sbjct: 223 KLKFTIDPASSAPIRVMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRK 273
>gi|398836472|ref|ZP_10593806.1| poly(A) polymerase [Herbaspirillum sp. YR522]
gi|398211585|gb|EJM98202.1| poly(A) polymerase [Herbaspirillum sp. YR522]
Length = 517
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 144/293 (49%), Gaps = 14/293 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + V + L+ GF+A++VGG VRDLLL PKDFDV T A +Q+++ F
Sbjct: 36 GIDPQLVSPNAVRVTQTLQDAGFKAFIVGGAVRDLLLSIKPKDFDVATNATPEQVKQLFR 95
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE--TVLLSQIPYGCDEIDLVRWRN 179
R+ IIGRRF I V +IEV++F + K+ +L +G D VR
Sbjct: 96 RAFIIGRRFQIVHVMFGQELIEVTTFRGASADASPKDEHGRVLRDNTFGEQHEDAVR--- 152
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFTIN++++DP + DY GI+D+R LR + + ED R+LR +R AA
Sbjct: 153 ---RDFTINAMYYDPASQTVLDYHGGIADIRAKTLRIIGEPEARYREDPVRMLRVVRFAA 209
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+L + + ++ I+ + +R+ E+ +L G A + + LR+ L LLP
Sbjct: 210 KLKFNIDPASSQPIRVMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLP 269
Query: 300 FHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
L+Q G+ + N D+ V +P L +HQ L
Sbjct: 270 LLDVVLEQPLGE------KFVTLALANTDERVRQGKPVSPGFLFASLLWHQVL 316
>gi|397166822|ref|ZP_10490266.1| poly(A) polymerase [Enterobacter radicincitans DSM 16656]
gi|396091910|gb|EJI89476.1| poly(A) polymerase [Enterobacter radicincitans DSM 16656]
Length = 454
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 127/258 (49%), Gaps = 18/258 (6%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G+ AYLVGG VRDLLL + PKDFDV T+A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYDAYLVGGGVRDLLLGKKPKDFDVTTSATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE----------GKETVLLSQIPYGCDE 171
++GRRF + V +IEV++F H E G+ +LL +G E
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR--GHHDEQQTDRSISQRGQNGMLLRDNIFGSIE 144
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL +R + + ED R+
Sbjct: 145 EDAQR------RDFTINSLYYSVADFTVRDYVGGMRDLEEGVIRLIGNPETRYREDPVRM 198
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+LG+ ++ + L++ I + +R+ E +L G + LLR Y
Sbjct: 199 LRAVRFAAKLGMRISEETAEPIPRLATLINDVPPARLFEESLKLLQAGYGYDTCRLLREY 258
Query: 292 NLLKILLPFHAAYLDQQA 309
L + L P Y ++
Sbjct: 259 GLFQPLFPTITRYFTEKG 276
>gi|421868697|ref|ZP_16300342.1| Poly(A) polymerase [Burkholderia cenocepacia H111]
gi|358071262|emb|CCE51220.1| Poly(A) polymerase [Burkholderia cenocepacia H111]
Length = 518
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 123/254 (48%), Gaps = 31/254 (12%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A+I + + V L+ GF+A++VGG VRDLLL PKDFDV T A +++R F
Sbjct: 62 GINPALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFR 121
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-------------------------KHGEG 156
R+ +IGRRF I V +IEVS+F + H
Sbjct: 122 RARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPEAAAATAEPPKRLKRDELDRRTHAVD 181
Query: 157 KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
+L +G D R RDFTIN++++DP + DY +G++D+R LR
Sbjct: 182 ASGRVLRDNVWGEQHEDAAR------RDFTINAMYYDPSTQTVLDYHDGMADVRARLLRM 235
Query: 217 LIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ F ED R+LR +R AA+LG +H+L+ I + +R+ E+ +L
Sbjct: 236 IGDPATRFREDPVRMLRVVRFAAKLGFEIEPHTREPIHALADLINNVPAARLFDEMLKLL 295
Query: 277 SYGAAESSICLLRR 290
G A + + LR+
Sbjct: 296 LSGHALACLQRLRK 309
>gi|127514059|ref|YP_001095256.1| poly(A) polymerase [Shewanella loihica PV-4]
gi|126639354|gb|ABO24997.1| poly(A) polymerase [Shewanella loihica PV-4]
Length = 480
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 162/330 (49%), Gaps = 30/330 (9%)
Query: 34 QMCREMCSDSFNQEVDVS---NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVG 90
Q C+++ D+ N + + V ++ I+R I + + VL L GF+AYLVG
Sbjct: 27 QFCKQLFEDNQNTTETTPAGLSLEIVARKHHAISRQHISENAIKVLYRLHKSGFKAYLVG 86
Query: 91 GCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF--- 147
G VRD+LL PKDFDV+T A ++I++ F ++GRRF + + VIEV++
Sbjct: 87 GGVRDILLGLEPKDFDVVTNATPEEIKKLFRNCRLVGRRFRLAHIVFGRDVIEVATLRGH 146
Query: 148 -----ETVAK-HGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYD 201
E ++K + EG+ LL YG + D R RDFT+N+L++D I+
Sbjct: 147 HVDSGEKISKVNAEGR---LLRDNVYGTIDEDAER------RDFTVNALYYDISDFSIHS 197
Query: 202 YANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIE 261
Y G+ DL LR + + ED R+LR +R A +LG+S K + L+ ++
Sbjct: 198 YGGGLQDLESRTLRLIGDPQKRYREDPVRMLRAVRFATKLGMSIDKAAAQPISELAPLLK 257
Query: 262 RLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLM 321
+ +R+ E+ + G A+++ ++R + L L P L++ + + +M
Sbjct: 258 DIPAARMYEEVLKLFFAGQAQNNYVMMRDFGLFAPLFPLVDNLLEEDPKGPSHKMVKAIM 317
Query: 322 RLFFNLDKLVSCDR---PADY---TLWVGL 345
R N D+ V D+ PA + LW L
Sbjct: 318 R---NTDERVEQDKSVTPAFFYAAMLWYPL 344
>gi|325266879|ref|ZP_08133550.1| poly(A) polymerase [Kingella denitrificans ATCC 33394]
gi|324981620|gb|EGC17261.1| poly(A) polymerase [Kingella denitrificans ATCC 33394]
Length = 443
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 98/173 (56%), Gaps = 10/173 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL L GF+AYLVGG VRDLLL + PKDFDV T A +Q+R F RS IIGRRF I
Sbjct: 40 VLSGLHRAGFEAYLVGGAVRDLLLGKTPKDFDVATNALPEQVRGVFKRSRIIGRRFQIVH 99
Query: 135 VHIKGSVIEVSSFETVA--KHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
V + IEVS+F KH E V YG D R RDFT N+L++
Sbjct: 100 VMVGAETIEVSTFRGGGNVKHNESGRIV--RDNAYGTLAQDAFR------RDFTCNALYY 151
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSF 245
D +I D+ NG+SD+R +L + A + ED RILR +R++ +LGL+
Sbjct: 152 DVQNQQIIDFHNGLSDIRAKRLVMIGDAAERYVEDPVRILRAIRLSGKLGLTL 204
>gi|424863914|ref|ZP_18287826.1| poly(A) polymerase [SAR86 cluster bacterium SAR86A]
gi|400757235|gb|EJP71447.1| poly(A) polymerase [SAR86 cluster bacterium SAR86A]
Length = 410
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 123/235 (52%), Gaps = 22/235 (9%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
++K L+ GFQAYLVGGCVRDLL + +PKDFD+ T A +QIR+ F S IIGRRF +
Sbjct: 14 IVKDLQDNGFQAYLVGGCVRDLLCKIIPKDFDIATNATPEQIRKIFKASRIIGRRFKLVH 73
Query: 135 VHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHR 183
V + +IEV++F + GE KE +L I +G E D R R
Sbjct: 74 VFNRSELIEVATFRS----GENKENDGNLVTDRTGKILRDNI-WGTLEQDTFR------R 122
Query: 184 DFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGL 243
DFT+N+L++ P KI D+ +GI +R K+ ++ F+ED R LR +R + +L
Sbjct: 123 DFTVNALYYCPVSKKIEDHNSGIKHIRDKKIVSIGDPIKRFSEDPVRSLRAIRFSNKLQF 182
Query: 244 SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
I A++ + + +R+ E + G AE + L Y L + L+
Sbjct: 183 KIDSKIKDAIYKQGHLLSHISNARLFDEFCKIFLNGIAEKNFKKLESYGLNQYLI 237
>gi|239814474|ref|YP_002943384.1| poly(A) polymerase [Variovorax paradoxus S110]
gi|239801051|gb|ACS18118.1| poly(A) polymerase [Variovorax paradoxus S110]
Length = 546
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 137/267 (51%), Gaps = 35/267 (13%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I A++ + + V+ L+ G++AY+VGG VRDLLL PKDFDV T A +Q++ F R
Sbjct: 36 IDPALVDERARNVVTTLQQAGYEAYVVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRR 95
Query: 123 SEIIGRRFPICR-VHIKG---SVIEVSSF---------ETVA-------------KHGEG 156
+ IIGRRF I V+ +G VIEVS+F E VA KH
Sbjct: 96 AFIIGRRFRIVHVVYGRGREHEVIEVSTFRAYMDNAAAEQVAGNERTSKGELASMKHAVD 155
Query: 157 KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
+L +G E D R RDFT+N++++DP + DY NGI D + L LR
Sbjct: 156 ASGRVLRDNVWGPQEEDAAR------RDFTVNAMYYDPANQVVVDYHNGIRDAQKLTLRM 209
Query: 217 LIPAYLSFTEDCARILRGLRIAARL-GLSFCKDIDTAMHSLSSS--IERLDKSRIMMELN 273
+ + ED RI+R +R +A+L L F + TA + SS + + +SR+ E+
Sbjct: 210 IGDPATRYREDPVRIIRAIRFSAKLAALGFKMEAKTAAPLVESSKLLADVPQSRLFDEML 269
Query: 274 YMLSYGAAESSICLLRRYNLLKILLPF 300
+L G A +++ LR+ L K + P
Sbjct: 270 KLLQTGHAIATVEQLRKLGLAKGIYPL 296
>gi|374334582|ref|YP_005091269.1| poly(A) polymerase [Oceanimonas sp. GK1]
gi|372984269|gb|AEY00519.1| poly(A) polymerase [Oceanimonas sp. GK1]
Length = 448
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 124/246 (50%), Gaps = 14/246 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R I + + VL L GF AYLVGG VRDLLL R PKDFDV T+A +Q++ F
Sbjct: 12 GISRRQISENALKVLYRLNKAGFDAYLVGGGVRDLLLGRQPKDFDVATSATPEQVKGLFS 71
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFE------TVAKH--GEGKETVLLSQIPYGCDEID 173
++GRRF + V VIEV++F +K KE +LL YG E D
Sbjct: 72 NCRLVGRRFRLAHVLFGRDVIEVATFRGHHHSVNTSKQLSSRSKEGMLLRDNVYGTIEED 131
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFT+N+L+++ ++ +A G+ DL +L + + ED R+LR
Sbjct: 132 AER------RDFTVNALYYNIADFTVHGFAGGLKDLEARRLELIGDPETRYREDPVRMLR 185
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R +A+LGLS + + L+ + + +R+ E +L G + L+ Y L
Sbjct: 186 AVRFSAKLGLSISPRTEAPIRELAPLLTDIPAARLFEETLKLLLAGQGVETYRQLQHYGL 245
Query: 294 LKILLP 299
L P
Sbjct: 246 FAPLFP 251
>gi|183600088|ref|ZP_02961581.1| hypothetical protein PROSTU_03620 [Providencia stuartii ATCC 25827]
gi|386742410|ref|YP_006215589.1| poly(A) polymerase I [Providencia stuartii MRSN 2154]
gi|188022373|gb|EDU60413.1| poly(A) polymerase [Providencia stuartii ATCC 25827]
gi|384479103|gb|AFH92898.1| poly(A) polymerase I [Providencia stuartii MRSN 2154]
Length = 523
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 134/268 (50%), Gaps = 16/268 (5%)
Query: 41 SDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRR 100
S++ E D N + I+R+ I + VL L G++AYLVGG VRDLLL +
Sbjct: 72 SETMTTETD-ENITVIPRSEHTISRSDISDNALKVLYRLNKNGYEAYLVGGGVRDLLLGK 130
Query: 101 VPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF---------ETVA 151
PKDFD+ T A +QIR+ F ++GRRF + + VIEV++F E
Sbjct: 131 KPKDFDITTNATPEQIRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRGHHDQIESEDKN 190
Query: 152 KHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRC 211
+ + K +LL +G E D +R RDFT+NSL+++ + DY G++DL+
Sbjct: 191 RSQQAKNGMLLRDNIFGSIEEDAIR------RDFTVNSLYYNIDDFSVRDYVGGLNDLKA 244
Query: 212 LKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMME 271
+R + + ED R+LR +R A +L + + + L+ + + +R+ E
Sbjct: 245 GIIRLIGDPETRYREDPVRMLRAVRFACKLDMRIEPNTAQPIQRLAPLLREIPSARLFEE 304
Query: 272 LNYMLSYGAAESSICLLRRYNLLKILLP 299
+L G ++ +L+ Y+L + L P
Sbjct: 305 SLKLLQAGQGYATYNMLKEYHLFEQLFP 332
>gi|386718109|ref|YP_006184435.1| Poly(A) polymerase [Stenotrophomonas maltophilia D457]
gi|384077671|emb|CCH12260.1| Poly(A) polymerase [Stenotrophomonas maltophilia D457]
Length = 461
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 138/288 (47%), Gaps = 13/288 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A +Q+++ F
Sbjct: 35 ISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRN 94
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEG----KETVLLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F + G G + +L+ YG E D +R
Sbjct: 95 CRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAIR-- 152
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + + ED R+LR +R+A
Sbjct: 153 ----RDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLA 208
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+LG + + L+ + +R+ E+ + G +S L RY LL +L
Sbjct: 209 AKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLF 268
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P A L +A + A ML+ N D V+ D P LL
Sbjct: 269 PESAKAL--KANRTGALR-RMLVEGLANTDARVANDEPVSPAFLFALL 313
>gi|225024314|ref|ZP_03713506.1| hypothetical protein EIKCOROL_01189 [Eikenella corrodens ATCC
23834]
gi|224942899|gb|EEG24108.1| hypothetical protein EIKCOROL_01189 [Eikenella corrodens ATCC
23834]
Length = 457
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 7/221 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GIT I + V+ L+ GF+AY+VGG VRDLLL PKDFDV T A +++R+ F
Sbjct: 32 GITPDGISYAAEKVVSRLQQAGFEAYVVGGAVRDLLLGIEPKDFDVATNARPEEVRKVFR 91
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE-TVLLSQIPYGCDEIDLVRWRNS 180
RS IIGRRF I V + IEV++F E ++ YG E D R
Sbjct: 92 RSRIIGRRFQIVHVMVGPETIEVTTFRGGGSPARQNEHGRIMQDNSYGSMEQDAAR---- 147
Query: 181 IHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAAR 240
RDFT N+L+++P +I D+ +G++D+R +L + A + ED R+LR R++ +
Sbjct: 148 --RDFTCNALYYNPARGEITDFHHGVADIRAKRLVMIGDARARYQEDPVRMLRAARLSGK 205
Query: 241 LGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAA 281
LG D + + + +R+ E+ +L GAA
Sbjct: 206 LGFQVAPDTAAPIAECLHLLPKEPLARLFDEVMKLLFSGAA 246
>gi|330446882|ref|ZP_08310533.1| poly(A) polymerase I [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491073|dbj|GAA05030.1| poly(A) polymerase I [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 447
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 166/371 (44%), Gaps = 52/371 (14%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G+ AYLVGG VRDLLL + PKDFD+ T A ++I++ F
Sbjct: 11 ISRKDISENALKVLYRLNKAGYDAYLVGGGVRDLLLDKQPKDFDIATNATPEEIKKLFRN 70
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFE----------TVAKHGEGK--------ETVLLSQ 164
+IGRRF + + +IEV++F T+ K + K E +LL
Sbjct: 71 CRLIGRRFRLAHILFGRDIIEVATFRGHHSDAPVQATIPKDSKQKPQISSRNREGMLLRD 130
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
YG + D R RDFTIN+L++ + DYANG+ DL +R + +
Sbjct: 131 NVYGTIDEDAER------RDFTINALYYSVKDFTVTDYANGVEDLNNRIVRLMGDPETRY 184
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R A +L + + LSS ++ + +R+ E +L G +
Sbjct: 185 REDPVRMLRAVRFAVKLDMDIDPATAAPIQELSSLLQDIPAARLFEESLKLLQSGQGLET 244
Query: 285 ICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR---PA---D 338
+LR YNL + L P A + + T + M+ + + DK ++ D+ PA
Sbjct: 245 YRMLREYNLFQQLFPLLADHFTEDQSSQTEK---MIEHILASTDKRIAEDKRVNPAFIYA 301
Query: 339 YTLWVGL------------LSFHQALVSDPQDAF--VVWVFASVLYHGK-----WKEGVK 379
LW + LSF+ A + D V A H W++ ++
Sbjct: 302 AMLWYPMMIRAEEVSFASGLSFYDAFMVASNDILDDQVRTIAIPRRHTTTVRDIWQQQLR 361
Query: 380 FARDRAKEPVK 390
FAR K K
Sbjct: 362 FARRSGKRAFK 372
>gi|424033964|ref|ZP_17773375.1| poly(A) polymerase [Vibrio cholerae HENC-01]
gi|424039734|ref|ZP_17778040.1| poly(A) polymerase [Vibrio cholerae HENC-02]
gi|408874077|gb|EKM13260.1| poly(A) polymerase [Vibrio cholerae HENC-01]
gi|408892653|gb|EKM30087.1| poly(A) polymerase [Vibrio cholerae HENC-02]
Length = 413
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 123/243 (50%), Gaps = 17/243 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+L L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F +IGRRF +
Sbjct: 1 MLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAH 60
Query: 135 VHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEIDLVRWRNSIHRDF 185
+ +IEV++F H E KE +LL YG + D R RDF
Sbjct: 61 IMFGRDIIEVATFR--GHHQEQKNKNVSQQSKEGMLLRDNVYGTIDEDAER------RDF 112
Query: 186 TINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSF 245
TINS++++ I+DYA GI DL +R + + ED R+LR +R A +L
Sbjct: 113 TINSMYYNIADYSIHDYARGIEDLEDRLVRLIGDPETRYREDPVRMLRAIRFAVKLDFDI 172
Query: 246 CKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL 305
+D + +S+ + + +R+ E +L G + LLR YNL + L P A +
Sbjct: 173 EEDTAAPIEEMSTLLRDIPSARLFEESLKLLQSGHGLETYHLLREYNLFQQLFPAIAEHF 232
Query: 306 DQQ 308
++
Sbjct: 233 TEE 235
>gi|424047643|ref|ZP_17785202.1| poly(A) polymerase [Vibrio cholerae HENC-03]
gi|408883765|gb|EKM22536.1| poly(A) polymerase [Vibrio cholerae HENC-03]
Length = 413
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 121/240 (50%), Gaps = 17/240 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+L L GF A+LVGG VRDLLL + PKDFD+ T A +QI++ F +IGRRF +
Sbjct: 1 MLYRLNGAGFDAFLVGGGVRDLLLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAH 60
Query: 135 VHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEIDLVRWRNSIHRDF 185
+ +IEV++F H E KE +LL YG + D R RDF
Sbjct: 61 IMFGRDIIEVATFR--GHHQEQKNKNVSQQSKEGMLLRDNVYGTIDEDAER------RDF 112
Query: 186 TINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSF 245
TINS++++ I+DYA GI DL +R + + ED R+LR +R A +L
Sbjct: 113 TINSMYYNIADYSIHDYARGIEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLDFDI 172
Query: 246 CKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL 305
+D + +++ + + +R+ E ML G + LLR YNL + L P A +
Sbjct: 173 EEDTAAPIEEMATLLRDIPSARLFEESLKMLQSGHGLETYHLLREYNLFQQLFPVIAEHF 232
>gi|383933743|ref|ZP_09987187.1| poly(A) polymerase [Rheinheimera nanhaiensis E407-8]
gi|383705349|dbj|GAB57278.1| poly(A) polymerase [Rheinheimera nanhaiensis E407-8]
Length = 498
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 146/318 (45%), Gaps = 39/318 (12%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF AYLVGGC+RDLLL PKDFDV+T A +Q+++ F
Sbjct: 70 ISRKDISPNALKVLYRLNDAGFDAYLVGGCIRDLLLGLKPKDFDVVTNAEPEQVKQVFRN 129
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF-----------ETVAK---HGEGKETVLLSQIPYG 168
+IGRRF + V VIEV++F +T K ++ +L YG
Sbjct: 130 CRLIGRRFRLAHVVFGREVIEVATFRGHHSGSDDDEDTTPKAKTASSSEQGQILRDNVYG 189
Query: 169 CDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
E D R RDFTIN+L++ +YD+ANG+ + K+ + + ED
Sbjct: 190 TIEEDAER------RDFTINALYYSVSDFSVYDFANGLQAIAERKIELIGDPQTRYREDP 243
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
RILR +R A +L + + L+ ++ + R+ EL +L G A + L+
Sbjct: 244 VRILRAIRFATKLNMQIAPATAAPITELAVLLKNIPAPRLFDELVKLLLAGKAFDNFMLM 303
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENP-----MMLMRLFFNLDKLVSCDRPADYT--- 340
R +LK LLP Q K+ + P ++ + + D V D+P
Sbjct: 304 RDTRVLKQLLP--------QLDKLLKQEPEGKAFLLATKALQDTDARVDADKPVTPAFIF 355
Query: 341 ---LWVGLLSFHQALVSD 355
LW + QALV D
Sbjct: 356 AALLWYPVERRSQALVID 373
>gi|407070501|ref|ZP_11101339.1| poly(A) polymerase [Vibrio cyclitrophicus ZF14]
Length = 451
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 123/243 (50%), Gaps = 12/243 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRD+LL PKDFD+ T A +QI+ F
Sbjct: 29 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKHLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKH------GEGKETVLLSQIPYGCDEIDLVR 176
+IGRRF + + +IEV++F + + +E +LL YG + D R
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSEEGMLLRDNVYGNVDEDAER 148
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFTIN+++++ I+DYA G+ DL +R + + ED R+LR +R
Sbjct: 149 ------RDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMR 202
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
AA+L +D + L+ ++ + +R+ E +L G + L+R YNL +
Sbjct: 203 FAAKLDFDIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 262
Query: 297 LLP 299
+ P
Sbjct: 263 MFP 265
>gi|254524051|ref|ZP_05136106.1| polynucleotide adenylyltransferase [Stenotrophomonas sp. SKA14]
gi|219721642|gb|EED40167.1| polynucleotide adenylyltransferase [Stenotrophomonas sp. SKA14]
Length = 461
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 135/288 (46%), Gaps = 13/288 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A +Q+++ F
Sbjct: 35 ISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRN 94
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEG----KETVLLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F + G G + +L+ YG E D VR
Sbjct: 95 CRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGSIEDDAVR-- 152
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + + ED R+LR +R+A
Sbjct: 153 ----RDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPEQRYREDPVRMLRAVRLA 208
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+LG + + L+ + +R+ E+ + G +S L RY LL +L
Sbjct: 209 AKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLF 268
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P A L T ML+ N D V+ D P LL
Sbjct: 269 PESAKALKSNR---TGALRRMLVEGLANTDARVANDEPVSPAFLFALL 313
>gi|444912730|ref|ZP_21232890.1| Poly(A) polymerase [Cystobacter fuscus DSM 2262]
gi|444716654|gb|ELW57497.1| Poly(A) polymerase [Cystobacter fuscus DSM 2262]
Length = 560
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 124/250 (49%), Gaps = 15/250 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+ L S +AYLVGGCVRDL L R PKDFD+ T+A+ ++R F +IGRRF +
Sbjct: 80 VIHRLHSHDHEAYLVGGCVRDLSLGRTPKDFDIATSAHPGEVRAIFRNCRLIGRRFRLAH 139
Query: 135 VHIKGS-VIEVSSF-----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI------- 181
++ KG +IEVS+F E V + DL+ +++
Sbjct: 140 IYFKGGKIIEVSTFRANPTELVDSPADNGNGEEEGSEVEESQNPDLLITHDNVFGTAEQD 199
Query: 182 --HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFTIN LF+D +I DY G DL +RT+ + ED RILR +R A+
Sbjct: 200 ARRRDFTINGLFYDVVEGRIIDYVRGRRDLDEHYIRTIGDPEIRMREDPVRILRAVRFAS 259
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+LGL AM + R +R++ E ++ G A S+ LL + LKILLP
Sbjct: 260 KLGLDIESRTYAAMEGAVEDLPRCAPARLLEETFRLIRGGVAAPSLRLLDALDALKILLP 319
Query: 300 FHAAYLDQQA 309
AAY +Q
Sbjct: 320 PVAAYFKEQG 329
>gi|260222990|emb|CBA33107.1| hypothetical protein Csp_B17390 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 531
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 153/304 (50%), Gaps = 50/304 (16%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI +++ + + V++ LK GF+AY+VGG VRDLL+ PKDFDV T A +Q++ F
Sbjct: 35 GIDPSLVDERAINVVRTLKQAGFEAYVVGGAVRDLLVGLRPKDFDVATNATPEQVKGLFR 94
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSF---------ETVA-------------KHGE 155
R+ IIGRRF I V+ +G VIEVS+F E VA KH
Sbjct: 95 RAFIIGRRFRIVHVVYGRGREHEVIEVSTFRAYLDNAAAEQVAGNERTSKSELAGMKHAV 154
Query: 156 GKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLR 215
+L +G E D VR RDFTIN++++DP + DY NG+ D + LR
Sbjct: 155 DSTGRVLRDNVWGPQEEDAVR------RDFTINAMYYDPETQIVVDYHNGLKDSKSRTLR 208
Query: 216 TLIPAYLSFTEDCARILRGLRIAARLG-LSFCKDIDTAMHSLSSS--IERLDKSRIMMEL 272
+ A + ED RI+R +R AA+L L F + TA + S + + +SR+ E+
Sbjct: 209 MIGDAATRYREDPVRIIRAVRFAAKLSPLGFKLEPKTAGPLVKSQKLLNDVPQSRLFDEM 268
Query: 273 NYMLSYGAAESSICLLRR-------YNLLKILL-----PFHAAYL---DQQAGKITAENP 317
+L G A +SI L+ Y LL +++ PF AA L D++ G+ P
Sbjct: 269 LKLLQTGHALASIEQLKVLGLATGIYPLLDVVVERGEQPFVAAALKDTDRRVGEGKPVAP 328
Query: 318 MMLM 321
L+
Sbjct: 329 SFLL 332
>gi|88705696|ref|ZP_01103406.1| polyA polymerase [Congregibacter litoralis KT71]
gi|88700209|gb|EAQ97318.1| polyA polymerase [Congregibacter litoralis KT71]
Length = 403
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 79 LKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIK 138
L+ + QAYLVGG VRDLLL PKDFD+ T A +++ F S IIGRRF I V
Sbjct: 4 LRDKEHQAYLVGGAVRDLLLGGHPKDFDIATDATPEEVHALFGNSRIIGRRFRIVHVRFG 63
Query: 139 GSVIEVSSF-----ETVAKHGEGKET--VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLF 191
VIEV++F +T A G + + +LL +G E D VR RD T+N+L+
Sbjct: 64 REVIEVTTFRGHHDDTEATTGAKRSSRGLLLRDNVFGTLEEDAVR------RDLTVNALY 117
Query: 192 FDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDT 251
+D +++D G+ DL ++R + + ED R+LR LR AA+LG + K
Sbjct: 118 YDSGSFEVFDQVGGLDDLEARQVRVIGDPATRYREDPVRMLRCLRFAAKLGFNVEKSSGA 177
Query: 252 AMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLD 306
A+ L++ ++ + +R+ E + G A++++ LLR Y + L P A D
Sbjct: 178 AIPRLAALLDDIPPARLFDEFGKLFLTGNAQATLRLLREYRCFEHLFPDSARLAD 232
>gi|15640615|ref|NP_230244.1| poly(A) polymerase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121730139|ref|ZP_01682536.1| polyA polymerase [Vibrio cholerae V52]
gi|227080777|ref|YP_002809328.1| polyA polymerase [Vibrio cholerae M66-2]
gi|229509186|ref|ZP_04398671.1| poly(A) polymerase [Vibrio cholerae B33]
gi|229519604|ref|ZP_04409047.1| poly(A) polymerase [Vibrio cholerae RC9]
gi|229608891|ref|YP_002879539.1| poly(A) polymerase [Vibrio cholerae MJ-1236]
gi|254850828|ref|ZP_05240178.1| polyA polymerase [Vibrio cholerae MO10]
gi|255744185|ref|ZP_05418138.1| poly(A) polymerase [Vibrio cholera CIRS 101]
gi|262155757|ref|ZP_06028881.1| poly(A) polymerase [Vibrio cholerae INDRE 91/1]
gi|298500714|ref|ZP_07010517.1| polyA polymerase [Vibrio cholerae MAK 757]
gi|360034410|ref|YP_004936173.1| polyA polymerase [Vibrio cholerae O1 str. 2010EL-1786]
gi|379740456|ref|YP_005332425.1| poly(A) polymerase [Vibrio cholerae IEC224]
gi|417812559|ref|ZP_12459219.1| poly(A) polymerase [Vibrio cholerae HC-49A2]
gi|417815421|ref|ZP_12462055.1| poly(A) polymerase [Vibrio cholerae HCUF01]
gi|418331565|ref|ZP_12942507.1| poly(A) polymerase [Vibrio cholerae HC-06A1]
gi|418336440|ref|ZP_12945339.1| poly(A) polymerase [Vibrio cholerae HC-23A1]
gi|418342822|ref|ZP_12949618.1| poly(A) polymerase [Vibrio cholerae HC-28A1]
gi|418347983|ref|ZP_12952719.1| poly(A) polymerase [Vibrio cholerae HC-43A1]
gi|419825065|ref|ZP_14348571.1| poly(A) polymerase family protein [Vibrio cholerae CP1033(6)]
gi|421315777|ref|ZP_15766349.1| poly(A) polymerase [Vibrio cholerae CP1032(5)]
gi|421319364|ref|ZP_15769923.1| poly(A) polymerase [Vibrio cholerae CP1038(11)]
gi|421323411|ref|ZP_15773940.1| poly(A) polymerase [Vibrio cholerae CP1041(14)]
gi|421327816|ref|ZP_15778332.1| poly(A) polymerase [Vibrio cholerae CP1042(15)]
gi|421330823|ref|ZP_15781305.1| poly(A) polymerase [Vibrio cholerae CP1046(19)]
gi|421338301|ref|ZP_15788739.1| poly(A) polymerase [Vibrio cholerae HC-20A2]
gi|421346634|ref|ZP_15797017.1| poly(A) polymerase [Vibrio cholerae HC-46A1]
gi|422890635|ref|ZP_16933050.1| poly(A) polymerase [Vibrio cholerae HC-40A1]
gi|422901504|ref|ZP_16936869.1| poly(A) polymerase [Vibrio cholerae HC-48A1]
gi|422905722|ref|ZP_16940569.1| poly(A) polymerase [Vibrio cholerae HC-70A1]
gi|422912321|ref|ZP_16946848.1| poly(A) polymerase [Vibrio cholerae HFU-02]
gi|422924803|ref|ZP_16957834.1| poly(A) polymerase [Vibrio cholerae HC-38A1]
gi|423144124|ref|ZP_17131739.1| poly(A) polymerase [Vibrio cholerae HC-19A1]
gi|423148828|ref|ZP_17136188.1| poly(A) polymerase [Vibrio cholerae HC-21A1]
gi|423152619|ref|ZP_17139818.1| poly(A) polymerase [Vibrio cholerae HC-22A1]
gi|423155401|ref|ZP_17142538.1| poly(A) polymerase [Vibrio cholerae HC-32A1]
gi|423163947|ref|ZP_17150736.1| poly(A) polymerase [Vibrio cholerae HC-48B2]
gi|423730074|ref|ZP_17703393.1| poly(A) polymerase family protein [Vibrio cholerae HC-17A1]
gi|423748129|ref|ZP_17711473.1| poly(A) polymerase family protein [Vibrio cholerae HC-50A2]
gi|423891796|ref|ZP_17725484.1| poly(A) polymerase family protein [Vibrio cholerae HC-62A1]
gi|423926570|ref|ZP_17730099.1| poly(A) polymerase family protein [Vibrio cholerae HC-77A1]
gi|424001126|ref|ZP_17744216.1| poly(A) polymerase [Vibrio cholerae HC-17A2]
gi|424005285|ref|ZP_17748270.1| poly(A) polymerase [Vibrio cholerae HC-37A1]
gi|424023294|ref|ZP_17762959.1| poly(A) polymerase [Vibrio cholerae HC-62B1]
gi|424026097|ref|ZP_17765714.1| poly(A) polymerase [Vibrio cholerae HC-69A1]
gi|424585501|ref|ZP_18025095.1| poly(A) polymerase [Vibrio cholerae CP1030(3)]
gi|424594119|ref|ZP_18033458.1| poly(A) polymerase [Vibrio cholerae CP1040(13)]
gi|424598060|ref|ZP_18037258.1| poly(A) polymerase [Vibrio Cholerae CP1044(17)]
gi|424600817|ref|ZP_18039974.1| poly(A) polymerase [Vibrio cholerae CP1047(20)]
gi|424605712|ref|ZP_18044678.1| poly(A) polymerase [Vibrio cholerae CP1050(23)]
gi|424609549|ref|ZP_18048408.1| poly(A) polymerase [Vibrio cholerae HC-39A1]
gi|424612351|ref|ZP_18051159.1| poly(A) polymerase [Vibrio cholerae HC-41A1]
gi|424616226|ref|ZP_18054918.1| poly(A) polymerase [Vibrio cholerae HC-42A1]
gi|424621106|ref|ZP_18059635.1| poly(A) polymerase [Vibrio cholerae HC-47A1]
gi|424644084|ref|ZP_18081839.1| poly(A) polymerase [Vibrio cholerae HC-56A2]
gi|424651729|ref|ZP_18089254.1| poly(A) polymerase [Vibrio cholerae HC-57A2]
gi|424655676|ref|ZP_18092979.1| poly(A) polymerase [Vibrio cholerae HC-81A2]
gi|440708801|ref|ZP_20889461.1| poly(A) polymerase [Vibrio cholerae 4260B]
gi|443502625|ref|ZP_21069615.1| poly(A) polymerase [Vibrio cholerae HC-64A1]
gi|443506538|ref|ZP_21073329.1| poly(A) polymerase [Vibrio cholerae HC-65A1]
gi|443510645|ref|ZP_21077310.1| poly(A) polymerase [Vibrio cholerae HC-67A1]
gi|443514205|ref|ZP_21080745.1| poly(A) polymerase [Vibrio cholerae HC-68A1]
gi|443518020|ref|ZP_21084438.1| poly(A) polymerase [Vibrio cholerae HC-71A1]
gi|443522886|ref|ZP_21089127.1| poly(A) polymerase [Vibrio cholerae HC-72A2]
gi|443530504|ref|ZP_21096520.1| poly(A) polymerase [Vibrio cholerae HC-7A1]
gi|443534278|ref|ZP_21100192.1| poly(A) polymerase [Vibrio cholerae HC-80A1]
gi|443537856|ref|ZP_21103713.1| poly(A) polymerase [Vibrio cholerae HC-81A1]
gi|449054181|ref|ZP_21732849.1| Poly(A) polymerase [Vibrio cholerae O1 str. Inaba G4222]
gi|9655025|gb|AAF93761.1| polyA polymerase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121628115|gb|EAX60652.1| polyA polymerase [Vibrio cholerae V52]
gi|227008665|gb|ACP04877.1| polyA polymerase [Vibrio cholerae M66-2]
gi|229344293|gb|EEO09268.1| poly(A) polymerase [Vibrio cholerae RC9]
gi|229353758|gb|EEO18694.1| poly(A) polymerase [Vibrio cholerae B33]
gi|229371546|gb|ACQ61969.1| poly(A) polymerase [Vibrio cholerae MJ-1236]
gi|254846533|gb|EET24947.1| polyA polymerase [Vibrio cholerae MO10]
gi|255738125|gb|EET93517.1| poly(A) polymerase [Vibrio cholera CIRS 101]
gi|262030468|gb|EEY49108.1| poly(A) polymerase [Vibrio cholerae INDRE 91/1]
gi|297540495|gb|EFH76553.1| polyA polymerase [Vibrio cholerae MAK 757]
gi|340043407|gb|EGR04366.1| poly(A) polymerase [Vibrio cholerae HCUF01]
gi|340043939|gb|EGR04896.1| poly(A) polymerase [Vibrio cholerae HC-49A2]
gi|341625175|gb|EGS50640.1| poly(A) polymerase [Vibrio cholerae HC-70A1]
gi|341626290|gb|EGS51685.1| poly(A) polymerase [Vibrio cholerae HC-48A1]
gi|341626946|gb|EGS52281.1| poly(A) polymerase [Vibrio cholerae HC-40A1]
gi|341640887|gb|EGS65462.1| poly(A) polymerase [Vibrio cholerae HFU-02]
gi|341648430|gb|EGS72490.1| poly(A) polymerase [Vibrio cholerae HC-38A1]
gi|356420592|gb|EHH74111.1| poly(A) polymerase [Vibrio cholerae HC-06A1]
gi|356421452|gb|EHH74953.1| poly(A) polymerase [Vibrio cholerae HC-21A1]
gi|356426075|gb|EHH79409.1| poly(A) polymerase [Vibrio cholerae HC-19A1]
gi|356433221|gb|EHH86414.1| poly(A) polymerase [Vibrio cholerae HC-23A1]
gi|356434402|gb|EHH87581.1| poly(A) polymerase [Vibrio cholerae HC-22A1]
gi|356437867|gb|EHH90938.1| poly(A) polymerase [Vibrio cholerae HC-28A1]
gi|356443068|gb|EHH95900.1| poly(A) polymerase [Vibrio cholerae HC-32A1]
gi|356448094|gb|EHI00879.1| poly(A) polymerase [Vibrio cholerae HC-43A1]
gi|356456354|gb|EHI08961.1| poly(A) polymerase [Vibrio cholerae HC-48B2]
gi|356645564|gb|AET25619.1| polyA polymerase [Vibrio cholerae O1 str. 2010EL-1786]
gi|378793966|gb|AFC57437.1| poly(A) polymerase [Vibrio cholerae IEC224]
gi|395922518|gb|EJH33334.1| poly(A) polymerase [Vibrio cholerae CP1032(5)]
gi|395923256|gb|EJH34068.1| poly(A) polymerase [Vibrio cholerae CP1041(14)]
gi|395925689|gb|EJH36486.1| poly(A) polymerase [Vibrio cholerae CP1038(11)]
gi|395931550|gb|EJH42295.1| poly(A) polymerase [Vibrio cholerae CP1042(15)]
gi|395934676|gb|EJH45414.1| poly(A) polymerase [Vibrio cholerae CP1046(19)]
gi|395945421|gb|EJH56087.1| poly(A) polymerase [Vibrio cholerae HC-20A2]
gi|395946782|gb|EJH57442.1| poly(A) polymerase [Vibrio cholerae HC-46A1]
gi|395962738|gb|EJH73030.1| poly(A) polymerase [Vibrio cholerae HC-56A2]
gi|395963888|gb|EJH74140.1| poly(A) polymerase [Vibrio cholerae HC-57A2]
gi|395966717|gb|EJH76832.1| poly(A) polymerase [Vibrio cholerae HC-42A1]
gi|395974902|gb|EJH84412.1| poly(A) polymerase [Vibrio cholerae HC-47A1]
gi|395977644|gb|EJH87049.1| poly(A) polymerase [Vibrio cholerae CP1030(3)]
gi|395979037|gb|EJH88401.1| poly(A) polymerase [Vibrio cholerae CP1047(20)]
gi|408009635|gb|EKG47535.1| poly(A) polymerase [Vibrio cholerae HC-39A1]
gi|408016493|gb|EKG54037.1| poly(A) polymerase [Vibrio cholerae HC-41A1]
gi|408037097|gb|EKG73503.1| poly(A) polymerase [Vibrio cholerae CP1040(13)]
gi|408044652|gb|EKG80548.1| poly(A) polymerase [Vibrio Cholerae CP1044(17)]
gi|408046609|gb|EKG82285.1| poly(A) polymerase [Vibrio cholerae CP1050(23)]
gi|408057282|gb|EKG92139.1| poly(A) polymerase [Vibrio cholerae HC-81A2]
gi|408611336|gb|EKK84697.1| poly(A) polymerase family protein [Vibrio cholerae CP1033(6)]
gi|408627285|gb|EKL00101.1| poly(A) polymerase family protein [Vibrio cholerae HC-17A1]
gi|408641326|gb|EKL13106.1| poly(A) polymerase family protein [Vibrio cholerae HC-50A2]
gi|408658639|gb|EKL29705.1| poly(A) polymerase family protein [Vibrio cholerae HC-77A1]
gi|408659300|gb|EKL30351.1| poly(A) polymerase family protein [Vibrio cholerae HC-62A1]
gi|408848300|gb|EKL88349.1| poly(A) polymerase [Vibrio cholerae HC-37A1]
gi|408849269|gb|EKL89296.1| poly(A) polymerase [Vibrio cholerae HC-17A2]
gi|408873575|gb|EKM12772.1| poly(A) polymerase [Vibrio cholerae HC-62B1]
gi|408881256|gb|EKM20160.1| poly(A) polymerase [Vibrio cholerae HC-69A1]
gi|439975542|gb|ELP51654.1| poly(A) polymerase [Vibrio cholerae 4260B]
gi|443433016|gb|ELS75536.1| poly(A) polymerase [Vibrio cholerae HC-64A1]
gi|443436804|gb|ELS82920.1| poly(A) polymerase [Vibrio cholerae HC-65A1]
gi|443440367|gb|ELS90055.1| poly(A) polymerase [Vibrio cholerae HC-67A1]
gi|443444462|gb|ELS97735.1| poly(A) polymerase [Vibrio cholerae HC-68A1]
gi|443448298|gb|ELT04932.1| poly(A) polymerase [Vibrio cholerae HC-71A1]
gi|443451072|gb|ELT11335.1| poly(A) polymerase [Vibrio cholerae HC-72A2]
gi|443458705|gb|ELT26100.1| poly(A) polymerase [Vibrio cholerae HC-7A1]
gi|443462585|gb|ELT33622.1| poly(A) polymerase [Vibrio cholerae HC-80A1]
gi|443466681|gb|ELT41338.1| poly(A) polymerase [Vibrio cholerae HC-81A1]
gi|448266336|gb|EMB03563.1| Poly(A) polymerase [Vibrio cholerae O1 str. Inaba G4222]
Length = 457
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----------VLLSQIPYGCDEI 172
+IGRRF + + ++EV++F H E ++ +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFR--GHHQESSQSQNIAAQSEAGMLLRDNVYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R+YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|114048784|ref|YP_739334.1| poly(A) polymerase [Shewanella sp. MR-7]
gi|113890226|gb|ABI44277.1| poly(A) polymerase [Shewanella sp. MR-7]
Length = 435
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 147/297 (49%), Gaps = 23/297 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GFQAYLVGG VRDLLL PKDFDV+T A ++I++ F
Sbjct: 8 ISRKQISENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRN 67
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEIDL 174
++GRRF + + VIEV++F HG+ E + LL YG EID
Sbjct: 68 CRVVGRRFRLAHIVFGRDVIEVATFR--GHHGDSNEKISKANAEGRLLRDNVYG--EID- 122
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDFT+N+L++D I Y G+ DL+ LR + + ED R+LR
Sbjct: 123 ---EDAERRDFTVNALYYDISDYSIRSYGGGMDDLKAGTLRLIGDPETRYREDPVRMLRA 179
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L ++ + + L+ ++ + +R+ E+ + G A ++ +++ Y L
Sbjct: 180 VRFATKLSMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLF 239
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLM--RLFFNLDKLVSCDRPADYTLWVGLLSFH 349
L P A L K + P M M + + D V+ D+P + + + ++
Sbjct: 240 APLFPQVDAQL-----KDAPKGPAMKMVQAIMKSTDARVNEDKPVTPSFFYAAILWY 291
>gi|86148287|ref|ZP_01066582.1| polyA polymerase [Vibrio sp. MED222]
gi|85833912|gb|EAQ52075.1| polyA polymerase [Vibrio sp. MED222]
Length = 451
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 123/243 (50%), Gaps = 12/243 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRD+LL PKDFD+ T A +QI+ F
Sbjct: 29 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKHLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKH------GEGKETVLLSQIPYGCDEIDLVR 176
+IGRRF + + +IEV++F + + +E +LL YG + D R
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSEEGMLLRDNVYGNVDEDAER 148
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFTIN+++++ I+DYA G+ DL +R + + ED R+LR +R
Sbjct: 149 ------RDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMR 202
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
AA+L +D + L+ ++ + +R+ E +L G + L+R YNL +
Sbjct: 203 FAAKLDFDIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 262
Query: 297 LLP 299
+ P
Sbjct: 263 MFP 265
>gi|117921843|ref|YP_871035.1| poly(A) polymerase [Shewanella sp. ANA-3]
gi|117614175|gb|ABK49629.1| poly(A) polymerase [Shewanella sp. ANA-3]
Length = 435
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 147/297 (49%), Gaps = 23/297 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GFQAYLVGG VRDLLL PKDFDV+T A ++I++ F
Sbjct: 8 ISRKQISENALKVLYRLNKSGFQAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRN 67
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEIDL 174
++GRRF + + VIEV++F HG+ E + LL YG EID
Sbjct: 68 CRVVGRRFRLAHIVFGRDVIEVATFR--GHHGDSNEKISKANAEGRLLRDNVYG--EID- 122
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDFT+N+L++D I Y G+ DL+ LR + + ED R+LR
Sbjct: 123 ---EDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTLRLIGDPETRYREDPVRMLRA 179
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L ++ + + L+ ++ + +R+ E+ + G A ++ +++ Y L
Sbjct: 180 VRFATKLSMAIEEVTAKPIKQLAPLLKDIPAARMYEEVLKLFFAGKAMANFEMMQEYKLF 239
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLM--RLFFNLDKLVSCDRPADYTLWVGLLSFH 349
L P A L K + P M M + + D V+ D+P + + + ++
Sbjct: 240 APLFPQVDAQL-----KDAPKGPAMKMVQAIMKSTDARVNEDKPVTPSFFYAAILWY 291
>gi|147673822|ref|YP_001216090.1| polyA polymerase [Vibrio cholerae O395]
gi|227116970|ref|YP_002818866.1| polyA polymerase [Vibrio cholerae O395]
gi|262169899|ref|ZP_06037589.1| poly(A) polymerase [Vibrio cholerae RC27]
gi|146315705|gb|ABQ20244.1| polyA polymerase [Vibrio cholerae O395]
gi|227012420|gb|ACP08630.1| polyA polymerase [Vibrio cholerae O395]
gi|262021633|gb|EEY40344.1| poly(A) polymerase [Vibrio cholerae RC27]
Length = 457
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----------VLLSQIPYGCDEI 172
+IGRRF + + ++EV++F H E ++ +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFR--GHHQESSQSQNIAAQSEAGMLLRDNMYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R+YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|229512859|ref|ZP_04402326.1| poly(A) polymerase [Vibrio cholerae TMA 21]
gi|229520886|ref|ZP_04410308.1| poly(A) polymerase [Vibrio cholerae TM 11079-80]
gi|229525250|ref|ZP_04414655.1| poly(A) polymerase [Vibrio cholerae bv. albensis VL426]
gi|229530403|ref|ZP_04419791.1| poly(A) polymerase [Vibrio cholerae 12129(1)]
gi|254226863|ref|ZP_04920433.1| polyA polymerase [Vibrio cholerae V51]
gi|254291266|ref|ZP_04962061.1| polyA polymerase [Vibrio cholerae AM-19226]
gi|262190661|ref|ZP_06048894.1| poly(A) polymerase [Vibrio cholerae CT 5369-93]
gi|297580723|ref|ZP_06942649.1| polyA polymerase [Vibrio cholerae RC385]
gi|417819451|ref|ZP_12466068.1| poly(A) polymerase [Vibrio cholerae HE39]
gi|417823717|ref|ZP_12470309.1| poly(A) polymerase [Vibrio cholerae HE48]
gi|419829140|ref|ZP_14352629.1| poly(A) polymerase family protein [Vibrio cholerae HC-1A2]
gi|419831935|ref|ZP_14355401.1| poly(A) polymerase family protein [Vibrio cholerae HC-61A2]
gi|419835516|ref|ZP_14358961.1| poly(A) polymerase [Vibrio cholerae HC-46B1]
gi|421342097|ref|ZP_15792504.1| poly(A) polymerase [Vibrio cholerae HC-43B1]
gi|421350426|ref|ZP_15800792.1| poly(A) polymerase [Vibrio cholerae HE-25]
gi|421353403|ref|ZP_15803736.1| poly(A) polymerase [Vibrio cholerae HE-45]
gi|422306001|ref|ZP_16393187.1| poly(A) polymerase family protein [Vibrio cholerae CP1035(8)]
gi|422916307|ref|ZP_16950646.1| poly(A) polymerase [Vibrio cholerae HC-02A1]
gi|422921819|ref|ZP_16955026.1| poly(A) polymerase [Vibrio cholerae BJG-01]
gi|423733879|ref|ZP_17707095.1| poly(A) polymerase family protein [Vibrio cholerae HC-41B1]
gi|423816856|ref|ZP_17715250.1| poly(A) polymerase family protein [Vibrio cholerae HC-55C2]
gi|423848942|ref|ZP_17719035.1| poly(A) polymerase family protein [Vibrio cholerae HC-59A1]
gi|423878907|ref|ZP_17722643.1| poly(A) polymerase family protein [Vibrio cholerae HC-60A1]
gi|423947555|ref|ZP_17733514.1| poly(A) polymerase family protein [Vibrio cholerae HE-40]
gi|423976824|ref|ZP_17737061.1| poly(A) polymerase family protein [Vibrio cholerae HE-46]
gi|423996728|ref|ZP_17739992.1| poly(A) polymerase [Vibrio cholerae HC-02C1]
gi|424008164|ref|ZP_17751114.1| poly(A) polymerase [Vibrio cholerae HC-44C1]
gi|424015430|ref|ZP_17755278.1| poly(A) polymerase [Vibrio cholerae HC-55B2]
gi|424018540|ref|ZP_17758340.1| poly(A) polymerase [Vibrio cholerae HC-59B1]
gi|424589842|ref|ZP_18029289.1| poly(A) polymerase [Vibrio cholerae CP1037(10)]
gi|424623909|ref|ZP_18062387.1| poly(A) polymerase [Vibrio cholerae HC-50A1]
gi|424628484|ref|ZP_18066791.1| poly(A) polymerase [Vibrio cholerae HC-51A1]
gi|424632446|ref|ZP_18070563.1| poly(A) polymerase [Vibrio cholerae HC-52A1]
gi|424635530|ref|ZP_18073552.1| poly(A) polymerase [Vibrio cholerae HC-55A1]
gi|424639445|ref|ZP_18077342.1| poly(A) polymerase [Vibrio cholerae HC-56A1]
gi|424647604|ref|ZP_18085282.1| poly(A) polymerase [Vibrio cholerae HC-57A1]
gi|429885353|ref|ZP_19366945.1| Poly(A) polymerase [Vibrio cholerae PS15]
gi|443526463|ref|ZP_21092544.1| poly(A) polymerase [Vibrio cholerae HC-78A1]
gi|125620614|gb|EAZ48978.1| polyA polymerase [Vibrio cholerae V51]
gi|150422830|gb|EDN14782.1| polyA polymerase [Vibrio cholerae AM-19226]
gi|229332176|gb|EEN97664.1| poly(A) polymerase [Vibrio cholerae 12129(1)]
gi|229338831|gb|EEO03848.1| poly(A) polymerase [Vibrio cholerae bv. albensis VL426]
gi|229342119|gb|EEO07115.1| poly(A) polymerase [Vibrio cholerae TM 11079-80]
gi|229350108|gb|EEO15061.1| poly(A) polymerase [Vibrio cholerae TMA 21]
gi|262033445|gb|EEY51950.1| poly(A) polymerase [Vibrio cholerae CT 5369-93]
gi|297535139|gb|EFH73974.1| polyA polymerase [Vibrio cholerae RC385]
gi|340041307|gb|EGR02274.1| poly(A) polymerase [Vibrio cholerae HE39]
gi|340048346|gb|EGR09268.1| poly(A) polymerase [Vibrio cholerae HE48]
gi|341640478|gb|EGS65066.1| poly(A) polymerase [Vibrio cholerae HC-02A1]
gi|341647888|gb|EGS71962.1| poly(A) polymerase [Vibrio cholerae BJG-01]
gi|395945600|gb|EJH56265.1| poly(A) polymerase [Vibrio cholerae HC-43B1]
gi|395954548|gb|EJH65158.1| poly(A) polymerase [Vibrio cholerae HE-25]
gi|395954750|gb|EJH65359.1| poly(A) polymerase [Vibrio cholerae HE-45]
gi|408015857|gb|EKG53426.1| poly(A) polymerase [Vibrio cholerae HC-50A1]
gi|408020989|gb|EKG58268.1| poly(A) polymerase [Vibrio cholerae HC-52A1]
gi|408026949|gb|EKG63940.1| poly(A) polymerase [Vibrio cholerae HC-56A1]
gi|408027357|gb|EKG64333.1| poly(A) polymerase [Vibrio cholerae HC-55A1]
gi|408036245|gb|EKG72688.1| poly(A) polymerase [Vibrio cholerae CP1037(10)]
gi|408036791|gb|EKG73208.1| poly(A) polymerase [Vibrio cholerae HC-57A1]
gi|408058833|gb|EKG93615.1| poly(A) polymerase [Vibrio cholerae HC-51A1]
gi|408622329|gb|EKK95317.1| poly(A) polymerase family protein [Vibrio cholerae HC-1A2]
gi|408627647|gb|EKL00451.1| poly(A) polymerase family protein [Vibrio cholerae CP1035(8)]
gi|408631649|gb|EKL04177.1| poly(A) polymerase family protein [Vibrio cholerae HC-41B1]
gi|408636655|gb|EKL08787.1| poly(A) polymerase family protein [Vibrio cholerae HC-55C2]
gi|408643830|gb|EKL15544.1| poly(A) polymerase family protein [Vibrio cholerae HC-60A1]
gi|408644960|gb|EKL16629.1| poly(A) polymerase family protein [Vibrio cholerae HC-59A1]
gi|408652097|gb|EKL23330.1| poly(A) polymerase family protein [Vibrio cholerae HC-61A2]
gi|408661613|gb|EKL32597.1| poly(A) polymerase family protein [Vibrio cholerae HE-40]
gi|408666038|gb|EKL36840.1| poly(A) polymerase family protein [Vibrio cholerae HE-46]
gi|408854379|gb|EKL94137.1| poly(A) polymerase [Vibrio cholerae HC-02C1]
gi|408858929|gb|EKL98599.1| poly(A) polymerase [Vibrio cholerae HC-46B1]
gi|408861931|gb|EKM01495.1| poly(A) polymerase [Vibrio cholerae HC-55B2]
gi|408866034|gb|EKM05423.1| poly(A) polymerase [Vibrio cholerae HC-44C1]
gi|408869808|gb|EKM09096.1| poly(A) polymerase [Vibrio cholerae HC-59B1]
gi|429227854|gb|EKY33820.1| Poly(A) polymerase [Vibrio cholerae PS15]
gi|443455175|gb|ELT18961.1| poly(A) polymerase [Vibrio cholerae HC-78A1]
Length = 457
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----------VLLSQIPYGCDEI 172
+IGRRF + + ++EV++F H E ++ +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFR--GHHQESSQSQNIAAQSEAGMLLRDNVYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R+YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|344206977|ref|YP_004792118.1| poly(A) polymerase [Stenotrophomonas maltophilia JV3]
gi|343778339|gb|AEM50892.1| poly(A) polymerase [Stenotrophomonas maltophilia JV3]
Length = 461
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 138/288 (47%), Gaps = 13/288 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A +Q+++ F
Sbjct: 35 ISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRN 94
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEG----KETVLLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F + G G + +L+ YG E D +R
Sbjct: 95 CRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAIR-- 152
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + + ED R+LR +R+A
Sbjct: 153 ----RDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPEQRYREDPVRMLRAVRLA 208
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+LG + + L+ + +R+ E+ + G +S L RY LL +L
Sbjct: 209 AKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLF 268
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P A L +A + A ML+ N D V+ D P LL
Sbjct: 269 PESAKAL--KANRTGALR-RMLVEGLANTDARVANDEPVSPAFLFALL 313
>gi|161504691|ref|YP_001571803.1| poly(A) polymerase I [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|160866038|gb|ABX22661.1| hypothetical protein SARI_02813 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 472
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 135/289 (46%), Gaps = 23/289 (7%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S Q V + + I+R I + + VL L G++AYLVGG
Sbjct: 15 FCRKVLSREESEAEQAVARPHMTIIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGG 74
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 75 GVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRG-- 132
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG E+ +LL +G E D R RDFTINSL++ +
Sbjct: 133 -HHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 185
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+L + + + L++ +
Sbjct: 186 DYVGGMQDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISSETAEPIPRLAALL 245
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G + LR YNL + L P Y +
Sbjct: 246 NDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLFPTITRYFTENG 294
>gi|78065319|ref|YP_368088.1| poly(A) polymerase [Burkholderia sp. 383]
gi|77966064|gb|ABB07444.1| Poly(A) polymerase, PcnB [Burkholderia sp. 383]
Length = 512
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 29/252 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A+I + + V L+ GF+A++VGG VRDLLL PKDFDV T A +++R F
Sbjct: 62 GINPALISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFR 121
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-----------------------KHGEGKE 158
R+ +IGRRF I V +IEVS+F + H
Sbjct: 122 RARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPEAAAAEPPKRLKRDELDRRTHAVDAS 181
Query: 159 TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLI 218
+L +G D R RDFTIN++++DP + DY +G++D+R LR +
Sbjct: 182 GRVLRDNVWGEQHEDAAR------RDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIG 235
Query: 219 PAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSY 278
F ED R+LR +R AA+LG +++L+ I + +R+ E+ +L
Sbjct: 236 DPATRFREDPVRMLRVVRFAAKLGFEIEPHTREPINALADLINNVPAARLFDEMLKLLLS 295
Query: 279 GAAESSICLLRR 290
G A + + LR+
Sbjct: 296 GHALACLTQLRK 307
>gi|422909110|ref|ZP_16943762.1| poly(A) polymerase [Vibrio cholerae HE-09]
gi|341635700|gb|EGS60406.1| poly(A) polymerase [Vibrio cholerae HE-09]
Length = 457
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDEI 172
+IGRRF + + ++EV++F + +A E +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAG--MLLRDNVYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R+YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|408823893|ref|ZP_11208783.1| poly(A) polymerase [Pseudomonas geniculata N1]
Length = 457
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 135/288 (46%), Gaps = 13/288 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A +Q+++ F
Sbjct: 33 ISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEG----KETVLLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F + G G + +L+ YG E D +R
Sbjct: 93 CRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAIR-- 150
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + + ED R+LR +R+A
Sbjct: 151 ----RDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPEQRYREDPVRMLRAVRLA 206
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+LG + + L+ + +R+ E+ + G +S L RY LL +L
Sbjct: 207 AKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLF 266
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P A L T ML+ N D V+ D P LL
Sbjct: 267 PESAKALKSNR---TGALRRMLVEGLANTDARVANDEPVSPAFLFALL 311
>gi|384423847|ref|YP_005633205.1| Poly(A) polymerase [Vibrio cholerae LMA3984-4]
gi|327483400|gb|AEA77807.1| Poly(A) polymerase [Vibrio cholerae LMA3984-4]
Length = 457
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----------VLLSQIPYGCDEI 172
+IGRRF + + ++EV++F H E ++ +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFR--GHHQESSQSQNIAAQSEAGMLLRDNVYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R+YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|154707640|ref|YP_001425127.1| poly(A) polymerase [Coxiella burnetii Dugway 5J108-111]
gi|154356926|gb|ABS78388.1| poly(A) polymerase [Coxiella burnetii Dugway 5J108-111]
Length = 439
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 135/264 (51%), Gaps = 16/264 (6%)
Query: 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL 113
+ + +N I+R+ I + VL L G++AYLVGG VRD+LL PKDFD+ T A
Sbjct: 24 RVIKRKNHSISRSDISPNALRVLYRLSKSGYEAYLVGGGVRDMLLSYHPKDFDIATNARP 83
Query: 114 KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF----------ETVAKHGEGKETVLLS 163
+IR+ F S +IGRRF + V+ +IEVS+F E +++ + T+L
Sbjct: 84 HEIRKLFKNSRLIGRRFRLVHVYFPNEIIEVSTFRANAEELLKEEPLSEMQKTGATMLSE 143
Query: 164 QIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLS 223
YG E D R RDFT+N+L+++ + D+ G+ DL +R +
Sbjct: 144 DNTYGTIEEDARR------RDFTVNALYYNITDFSVIDFTGGMRDLHRRLIRMIGDPTQR 197
Query: 224 FTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAES 283
+ ED R+LR +R+AA+L D + + L + + + +R+ E+ + G A
Sbjct: 198 YHEDPVRLLRAIRLAAKLDFKIHPDTEEPLKKLHNLLRHVPSARLFTEVLKIFFEGHAVR 257
Query: 284 SICLLRRYNLLKILLPFHAAYLDQ 307
S LL++ + ++ L P A L++
Sbjct: 258 SYQLLKQTHYMRTLFPEAATILEK 281
>gi|421884764|ref|ZP_16315971.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|379985715|emb|CCF88244.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
Length = 454
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
YNL + L P Y +
Sbjct: 258 YNLFQPLFPTITRYFTENG 276
>gi|258623057|ref|ZP_05718070.1| Poly(A) polymerase [Vibrio mimicus VM573]
gi|424809571|ref|ZP_18234948.1| polyA polymerase [Vibrio mimicus SX-4]
gi|449146593|ref|ZP_21777366.1| poly(A) polymerase [Vibrio mimicus CAIM 602]
gi|258584670|gb|EEW09406.1| Poly(A) polymerase [Vibrio mimicus VM573]
gi|342323059|gb|EGU18845.1| polyA polymerase [Vibrio mimicus SX-4]
gi|449077825|gb|EMB48786.1| poly(A) polymerase [Vibrio mimicus CAIM 602]
Length = 457
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDEI 172
+IGRRF + + ++EV++F + +A E +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAG--MLLRDNVYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R+YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|258627266|ref|ZP_05722052.1| Poly(A) polymerase [Vibrio mimicus VM603]
gi|258580449|gb|EEW05412.1| Poly(A) polymerase [Vibrio mimicus VM603]
Length = 457
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDEI 172
+IGRRF + + ++EV++F + +A E +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAG--MLLRDNVYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R+YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|383457508|ref|YP_005371497.1| poly(A) polymerase [Corallococcus coralloides DSM 2259]
gi|380733758|gb|AFE09760.1| poly(A) polymerase [Corallococcus coralloides DSM 2259]
Length = 570
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/306 (34%), Positives = 151/306 (49%), Gaps = 24/306 (7%)
Query: 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEII 126
M P VVL+ L G QAYLVGGCVRDLLL + PKDFDV T+A+ ++R F +I
Sbjct: 139 MDPDALKVVLR-LHQHGHQAYLVGGCVRDLLLGKKPKDFDVATSAHPGEVRAIFRNCRLI 197
Query: 127 GRRFPICRVHIKGS-VIEVSSFE---------TVAKHGEGKETVLLSQIPYGCDEIDLVR 176
GRRF + V+ KG ++EVS+F A+ G+ E +L++ D +
Sbjct: 198 GRRFRLAHVYFKGGKIVEVSTFRANPTELEPAAGAEEGQSGEDLLITH-----DNVFGTA 252
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
+++ RDFTIN LF+D ++ DY G DL +RT+ + ED RILR +R
Sbjct: 253 QQDARRRDFTINGLFYDASEGRVIDYVRGRRDLDERFIRTIGDPEIRMREDPVRILRAVR 312
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
AA+L L AM + R +R++ E ++ G + ++ LL + LKI
Sbjct: 313 FAAKLDLDIESRTYAAMEGAVEDLPRCAPARLLEETFRLIRGGVSAPALKLLAALDALKI 372
Query: 297 LLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL----SFHQAL 352
LLP AYL ++ GK E LDK VS D + + L S Q
Sbjct: 373 LLPPVDAYL-RENGK---EGEKTFYAFAQALDKRVSAGEVLDDAILLAALLVPISRAQPP 428
Query: 353 VSDPQD 358
V + QD
Sbjct: 429 VEESQD 434
>gi|146329312|ref|YP_001209046.1| poly(A) polymerase PcnB [Dichelobacter nodosus VCS1703A]
gi|146232782|gb|ABQ13760.1| poly(A) polymerase PcnB [Dichelobacter nodosus VCS1703A]
Length = 430
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 14/231 (6%)
Query: 74 VVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPIC 133
+ + L G++AYLVGGC+RD LL++ PKDFD+ T A ++I F +IGRRF +
Sbjct: 30 AICRQLHEAGYEAYLVGGCLRDTLLQQPPKDFDIATNARPEEIAALFRNCRLIGRRFRLA 89
Query: 134 RVHIKGSVIEVSSF-----ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTIN 188
+H +IEV++F E V +G +L YG E D++R RDF IN
Sbjct: 90 HLHYGRDIIEVATFRASADEQVKTDADGH---VLEDNHYGTMEEDVLR------RDFIIN 140
Query: 189 SLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKD 248
SL++D + DY + ++D+R ++R + + ED R+LR R AA+L +
Sbjct: 141 SLYYDVQTGVLIDYLDALADIRARQIRLIGTPSARYIEDPVRMLRAARFAAKLSMPLEAQ 200
Query: 249 IDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
A+ S + + +R+ E+ + G E S +LR + L +L P
Sbjct: 201 TQQAIASCRQELRAVPAARLFDEVQKLFMSGYGEKSYEILRSFELFAMLFP 251
>gi|418354436|ref|ZP_12957160.1| poly(A) polymerase [Vibrio cholerae HC-61A1]
gi|421334405|ref|ZP_15784874.1| poly(A) polymerase [Vibrio cholerae CP1048(21)]
gi|423159263|ref|ZP_17146236.1| poly(A) polymerase [Vibrio cholerae HC-33A2]
gi|424658464|ref|ZP_18095721.1| poly(A) polymerase [Vibrio cholerae HE-16]
gi|356450100|gb|EHI02832.1| poly(A) polymerase [Vibrio cholerae HC-33A2]
gi|356454212|gb|EHI06867.1| poly(A) polymerase [Vibrio cholerae HC-61A1]
gi|395937514|gb|EJH48228.1| poly(A) polymerase [Vibrio cholerae CP1048(21)]
gi|408054948|gb|EKG89902.1| poly(A) polymerase [Vibrio cholerae HE-16]
Length = 439
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 11 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 70
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----------VLLSQIPYGCDEI 172
+IGRRF + + ++EV++F H E ++ +LL YG +
Sbjct: 71 CRLIGRRFRLAHIMFGRDIVEVATFR--GHHQESSQSQNIAAQSEAGMLLRDNVYGTIDE 128
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 129 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 182
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R+YN
Sbjct: 183 RAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYN 242
Query: 293 LLKILLP 299
L + L P
Sbjct: 243 LFQQLFP 249
>gi|194471610|ref|ZP_03077594.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205358330|ref|ZP_03224002.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|194457974|gb|EDX46813.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205335022|gb|EDZ21786.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
Length = 454
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
YNL + L P Y +
Sbjct: 258 YNLFQPLFPTITRYFTENG 276
>gi|261212292|ref|ZP_05926578.1| poly(A) polymerase [Vibrio sp. RC341]
gi|260838900|gb|EEX65551.1| poly(A) polymerase [Vibrio sp. RC341]
Length = 457
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDEI 172
+IGRRF + + ++EV++F + +A E +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAG--MLLRDNVYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R+YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|84394000|ref|ZP_00992739.1| polyA polymerase [Vibrio splendidus 12B01]
gi|84375394|gb|EAP92302.1| polyA polymerase [Vibrio splendidus 12B01]
Length = 451
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 12/243 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRD+LL PKDFD+ T A +QI+ F
Sbjct: 29 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKNLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKH------GEGKETVLLSQIPYGCDEIDLVR 176
+IGRRF + + +IEV++F + + E +LL YG + D R
Sbjct: 89 CRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSDEGMLLRDNVYGNVDEDAER 148
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFTIN+++++ I+DYA G+ DL +R + + ED R+LR +R
Sbjct: 149 ------RDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMR 202
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
AA+L +D + L+ ++ + +R+ E +L G + L+R YNL +
Sbjct: 203 FAAKLDFDIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 262
Query: 297 LLP 299
+ P
Sbjct: 263 MFP 265
>gi|319792304|ref|YP_004153944.1| poly(a) polymerase [Variovorax paradoxus EPS]
gi|315594767|gb|ADU35833.1| poly(A) polymerase [Variovorax paradoxus EPS]
Length = 543
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/267 (34%), Positives = 136/267 (50%), Gaps = 35/267 (13%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I A++ + + V+ L+ G++AY+VGG VRDLLL PKDFDV T A +Q++ F R
Sbjct: 36 IDPALVDERAKNVVTTLQQAGYEAYVVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRR 95
Query: 123 SEIIGRRFPICR-VHIKG---SVIEVSSF---------ETVA-------------KHGEG 156
+ IIGRRF I V+ +G VIEVS+F E VA KH
Sbjct: 96 AFIIGRRFRIVHVVYGRGREHEVIEVSTFRAYMDSAAAEQVAGNERTSKGELASMKHAVD 155
Query: 157 KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
+L +G E D R RDFT+N++++DP + DY NGI D + L LR
Sbjct: 156 ASGRVLRDNVWGPQEEDAAR------RDFTVNAMYYDPANQVVVDYHNGIKDAQKLTLRM 209
Query: 217 LIPAYLSFTEDCARILRGLRIAARL-GLSFCKDIDTAMHSLSSS--IERLDKSRIMMELN 273
+ + ED RI+R +R +A+L L F + TA + SS + + +SR+ E+
Sbjct: 210 IGDPVTRYREDPVRIIRAIRFSAKLAALGFKMEAKTAAPLIESSKLLADVPQSRMFDEML 269
Query: 274 YMLSYGAAESSICLLRRYNLLKILLPF 300
+L G A ++I LR+ L + P
Sbjct: 270 KLLQTGHAIATIEQLRKLGLATGIYPL 296
>gi|423138710|ref|ZP_17126348.1| polynucleotide adenylyltransferase [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379051264|gb|EHY69155.1| polynucleotide adenylyltransferase [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 454
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLKEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLHMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
YNL + L P Y +
Sbjct: 258 YNLFQPLFPTITRYFTENG 276
>gi|33151792|ref|NP_873145.1| polyA polymerase [Haemophilus ducreyi 35000HP]
gi|33148013|gb|AAP95534.1| polyA polymerase [Haemophilus ducreyi 35000HP]
Length = 523
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 142/272 (52%), Gaps = 22/272 (8%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
TV + + I P+ + +++ L G++AYLVGGC+RDLLL KD D+ T A +
Sbjct: 86 TVSANHYQIYPKDFPKNALAIVEKLDKAGYEAYLVGGCIRDLLLGHKAKDVDIATNAKPE 145
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQ 164
+I++ F R +IGRRF + + + EV++F + ++K + + +LL
Sbjct: 146 EIQKIFGRQCRLIGRRFRLAHIVFGREIYEVATFRADHSITASDKISKISD--QGMLLRD 203
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
YG D R RDFT+N+L++DP I+D+ +GI+DL+ KLR + +
Sbjct: 204 NVYGSLSDDAER------RDFTVNALYYDPKRQLIFDFFDGINDLKHAKLRLIGNPVTRY 257
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R A+L + K D ++ L+S ++ + +R+ E +L G +
Sbjct: 258 QEDPVRMLRAVRFMAKLDMFLDKPSDAPIYELASLLKNIPAARLFDESLKLLQSGQGFKT 317
Query: 285 ICLLRRYNLLK----ILLPFHAAYLDQQAGKI 312
L+R+Y L + +L PF A D Q ++
Sbjct: 318 YQLMRQYGLFEQLFPVLTPFFTAQNDSQVERM 349
>gi|392955062|ref|ZP_10320613.1| poly(A) polymerase [Hydrocarboniphaga effusa AP103]
gi|391857719|gb|EIT68250.1| poly(A) polymerase [Hydrocarboniphaga effusa AP103]
Length = 453
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 8/239 (3%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R+MI + L LK G++AY+VGG VRDLL PKDFDV T A+ +Q++ F
Sbjct: 14 VSRSMISSGTLKTLYTLKDAGYEAYMVGGGVRDLLAGIEPKDFDVATNAHPEQVKPLFRS 73
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAK--HGEGKETVLLSQIPYGCDEIDLVRWRNS 180
++GRRF IC V ++E ++F H + +LS YG E D +R
Sbjct: 74 CRLVGRRFVICHVRFGDEIVETTTFRGPITDLHKRDETGRILSDNEYGTLEQDALR---- 129
Query: 181 IHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAAR 240
RDFTIN+L++D I D+ +GI D++ +R + L + ED R+LR +RIA +
Sbjct: 130 --RDFTINALYYDIRDFSIVDFTSGIEDMKQGVIRLIGDPELRYREDPVRMLRAIRIANK 187
Query: 241 LGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
L + + L+ ++ + +R+ E+ +L AE ++ LR Y L + L P
Sbjct: 188 LRFRIDEATAAPIARLAPLLKEIPAARLFDEVLKLLLSREAEDNLYGLRVYGLFRQLFP 246
>gi|222616187|gb|EEE52319.1| hypothetical protein OsJ_34338 [Oryza sativa Japonica Group]
Length = 459
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 135/288 (46%), Gaps = 13/288 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A +Q+++ F
Sbjct: 35 ISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRN 94
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEG----KETVLLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F + G G + +L+ YG E D +R
Sbjct: 95 CRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAIR-- 152
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + + ED R+LR +R+A
Sbjct: 153 ----RDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPEQRYREDPVRMLRAVRLA 208
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+LG + + L+ + +R+ E+ + G +S L RY LL +L
Sbjct: 209 AKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLF 268
Query: 299 PFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P A L T ML+ N D V+ D P LL
Sbjct: 269 PESAKALKSNR---TGALRRMLVEGLANTDARVANDEPVSPAFLFALL 313
>gi|300721909|ref|YP_003711187.1| poly(A) polymerase [Xenorhabdus nematophila ATCC 19061]
gi|297628404|emb|CBJ88969.1| poly(A) polymerase I [Xenorhabdus nematophila ATCC 19061]
Length = 455
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 150/307 (48%), Gaps = 28/307 (9%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GFQAYLVGG VRDLLL + PKDFD+ T A +Q+R+ F
Sbjct: 25 ISRKDISDNALKVLYRLNKSGFQAYLVGGGVRDLLLHKQPKDFDIATNATPEQVRKLFRN 84
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETV---------AKHGEGKETVLLSQIPYGCDEID 173
++GRRF + + VIEV++F ++ + + +LL +G E D
Sbjct: 85 CRLVGRRFRLAHIMFGPDVIEVATFRGPHDQVESNDRSQSHKAQSGMLLRDNIFGSVEED 144
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G++DL +R + + + ED R+LR
Sbjct: 145 AAR------RDFTINSLYYGIEDFALRDYVGGMADLNEGIIRLIGDPEIRYREDPVRMLR 198
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A++L ++ + L+ + + +R+ E +L G S+ LL +YNL
Sbjct: 199 AVRFASKLDMTIEPATAEPIPRLAFLLNDIPSARLFEESLKLLQSGQGYSTYKLLCKYNL 258
Query: 294 LKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLWVGL 345
+ L P L Q T ++PM +L+++ N D + D+ PA LW L
Sbjct: 259 FQPLFPMIQRGLTQ-----TGDSPMEKLLVQVLKNTDHRIRDDKRVNPAFLFAAMLWYPL 313
Query: 346 LSFHQAL 352
+ + L
Sbjct: 314 IEHAEKL 320
>gi|392546651|ref|ZP_10293788.1| poly(A) polymerase [Pseudoalteromonas rubra ATCC 29570]
Length = 443
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 28/301 (9%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R + VL LK G+ AYLVGGC+RD+LL PKDFDV+T A +Q+++ F
Sbjct: 16 AISRKQFSPNAIKVLYRLKDGGYDAYLVGGCIRDILLGIEPKDFDVVTNATPEQVKKLFR 75
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV-----------LLSQIPYGCD 170
+IGRRF + + +IEV+ T+ H + ++ LL YG
Sbjct: 76 NCRLIGRRFRLAHIVFGREIIEVA---TMRGHHQAQDNPDPTSQSSDQGQLLRDNVYGTI 132
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDF+IN+L++ I D+A GI+ + K+ + + ED R
Sbjct: 133 EEDAQR------RDFSINALYYSINDFSIRDFAGGIAAIEHRKIELIGDPETRYREDPVR 186
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R A +L +S + + L+ + + +R+ E + G AE++ +LR+
Sbjct: 187 MLRAVRFATKLDMSIAGPTEAPIAELAPLLGNIPPARLFEETLKLFLGGKAEANFLMLRK 246
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR---PADYTLWVGLLS 347
Y L K L P A LD + + ++F N D ++ D+ PA ++ LL
Sbjct: 247 YGLFKQLFPAVDAILDSADSEFEI---TFIQKMFANTDDRINADKKVTPA--FIYAALLW 301
Query: 348 F 348
F
Sbjct: 302 F 302
>gi|37524869|ref|NP_928213.1| poly(A) polymerase I [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36784294|emb|CAE13169.1| Poly(A) polymerase (PAP) (Plasmid copy number protein)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 521
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 126/254 (49%), Gaps = 15/254 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+AYLVGG VRDLLL PKDFD+ T A +Q+R+ F
Sbjct: 95 ISRRDISENALKVLYRLNKSGFEAYLVGGGVRDLLLGTKPKDFDIATNATPEQVRKLFRN 154
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG---------EGKETVLLSQIPYGCDEID 173
++GRRF + + VIEV++F + + + +LL +G E D
Sbjct: 155 CRLVGRRFRLAHIMFGQEVIEVATFRGPHEQTGSDDKNQSQQAQSGMLLRDNIFGSIEED 214
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+R RDFTINSL++ + DYA G+ DL +R + + ED R+LR
Sbjct: 215 AMR------RDFTINSLYYGINDFSLRDYAGGLHDLETGVIRLIGDPETRYREDPVRMLR 268
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A++L ++ + + L+ + + +R+ E +L G S+ LLR Y L
Sbjct: 269 AIRFASKLNMTISEGTAEPISRLAFLLSNIPPARLFEESLKLLQTGQGYSTYQLLREYRL 328
Query: 294 LKILLPFHAAYLDQ 307
+ L P Y +
Sbjct: 329 FQPLFPLIQRYFTE 342
>gi|262401705|ref|ZP_06078271.1| poly(A) polymerase [Vibrio sp. RC586]
gi|262352122|gb|EEZ01252.1| poly(A) polymerase [Vibrio sp. RC586]
Length = 457
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 124/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDEI 172
+IGRRF + + ++EV++F + +A E +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAG--MLLRDNVYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAEPIEHLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMREYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|260771220|ref|ZP_05880147.1| poly(A) polymerase [Vibrio furnissii CIP 102972]
gi|375130001|ref|YP_004992100.1| polyA polymerase [Vibrio furnissii NCTC 11218]
gi|260613817|gb|EEX39009.1| poly(A) polymerase [Vibrio furnissii CIP 102972]
gi|315179174|gb|ADT86088.1| polyA polymerase [Vibrio furnissii NCTC 11218]
Length = 456
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 123/245 (50%), Gaps = 16/245 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + + VL L GF+AYLVGG VRDLLL PKDFDV T A +QIR+ F
Sbjct: 31 VSRQHISENALKVLYRLHGAGFEAYLVGGGVRDLLLGGKPKDFDVATNATPEQIRQLFRN 90
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEIDL 174
+IGRRF + + +IEV++F H E + + LL YG + D
Sbjct: 91 CRLIGRRFRLAHIMFGRDIIEVATFR--GHHQENNKQIASQSEAGMLLRDNVYGTIDEDA 148
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTIN+++++ I+DYA G+ D+ +R + + ED R+LR
Sbjct: 149 ER------RDFTINAMYYNIADYSIHDYAGGMEDMDDKLIRLIGDPETRYREDPVRMLRA 202
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L ++ + L+ + + +R+ E ML G + L+R YNL
Sbjct: 203 IRFAVKLDFDIEEETAAPIEHLAPLLRDIPAARLYEESLKMLQSGYGLETYHLMREYNLF 262
Query: 295 KILLP 299
+ L P
Sbjct: 263 QQLFP 267
>gi|205359858|ref|ZP_02832814.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205342490|gb|EDZ29254.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
Length = 454
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 125/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSENDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
YNL + L P Y +
Sbjct: 258 YNLFQPLFPTITRYFTENG 276
>gi|357417043|ref|YP_004930063.1| polynucleotide adenylyltransferase [Pseudoxanthomonas spadix
BD-a59]
gi|355334621|gb|AER56022.1| polynucleotide adenylyltransferase [Pseudoxanthomonas spadix
BD-a59]
Length = 417
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 137/278 (49%), Gaps = 16/278 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+L L+ GF AYLVGG VRDLL+ + PKDFDV T A +QI++QF +IGRRF +
Sbjct: 1 MLYRLRDAGFSAYLVGGAVRDLLVGQHPKDFDVATDATPEQIKQQFRNCRLIGRRFRLAH 60
Query: 135 VHIKGSVIEVSSFETVAKHGEG-KET----VLLSQIPYGCDEIDLVRWRNSIHRDFTINS 189
V +IEV++F + G G +ET LL YG E D +R RDFT N+
Sbjct: 61 VVFGREIIEVATFRANSDDGSGDRETHEDGRLLRDNVYGSIEDDAIR------RDFTANA 114
Query: 190 LFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDI 249
L++ + DY G D+ +LR + + ED R+LR +R+AA+LG +
Sbjct: 115 LYYAIEDFSVRDYCGGFEDVMARRLRLIGDPEQRYREDPVRMLRAVRLAAKLGFTIDGPT 174
Query: 250 DTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL-DQQ 308
+ L+ + +R+ E+ + G A +S L LL +LLP AA L +
Sbjct: 175 ADPIPVLAPLLAEAAPARLFEEILKLFLSGNAVASFQGLEHSGLLPVLLPESAAALQSNR 234
Query: 309 AGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
+G + A ML+ D V+ D P LL
Sbjct: 235 SGALRA----MLLEGLAGTDARVANDEPVSPAFLFALL 268
>gi|219870496|ref|YP_002474871.1| polyA polymerase [Haemophilus parasuis SH0165]
gi|219690700|gb|ACL31923.1| polyA polymerase [Haemophilus parasuis SH0165]
Length = 477
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 139/275 (50%), Gaps = 22/275 (8%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T + + GI+ P + ++ L+ G++ Y+VGGC+RDLLL + KDFD+ T A +
Sbjct: 36 TQPAGHYGISTKDFPSNAIAIINKLQKNGYEVYMVGGCIRDLLLGQKAKDFDIATNARPE 95
Query: 115 QIRRQFHRS-EIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQ 164
+I++ F R +IGRRF + + + EV++F E ++K E +LL
Sbjct: 96 EIQKIFGRQCRLIGRRFRLAHIVFGREIYEVATFRADHHSNATEKMSKTSEA--GMLLRD 153
Query: 165 IPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
YG D R RDF++N+ ++D N IYD+ NGI DL+ KL + +
Sbjct: 154 NVYGTLREDAER------RDFSVNAFYYDVSHNLIYDFFNGIDDLKAGKLALIGDPVTRY 207
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R A+L + K D + ++ ++ + +R+ E +L G +
Sbjct: 208 QEDPVRMLRAIRFMAKLDMFLDKASDEPIRKMAVLLKNIPAARLFDESLKLLQSGYGHKT 267
Query: 285 ICLLRRYNLLK----ILLPFHAAYLDQQAGKITAE 315
LLR+Y L + +L PF Y D + ++ ++
Sbjct: 268 YELLRKYGLFEQLFPVLSPFFTEYGDSNSERMISK 302
>gi|430375986|ref|ZP_19430389.1| poly(A) polymerase [Moraxella macacae 0408225]
gi|429541217|gb|ELA09245.1| poly(A) polymerase [Moraxella macacae 0408225]
Length = 579
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 9/197 (4%)
Query: 57 DSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQI 116
D++NLG+ + +P V+ L GF+AY+VGG VRD LL PKDFD +T A QI
Sbjct: 32 DAKNLGLHKGYLPSSIKEVILTLNQAGFEAYIVGGGVRDALLGLEPKDFDAVTNATPTQI 91
Query: 117 RRQF-HRSEIIGRRFPICRVHIKGSVIEVSSF--ETVAKHGEGKETVLLSQIPYGCDEID 173
+ F R IIG+RF +C V+ +IEV++F + + + +++ +G D
Sbjct: 92 KAVFGKRCRIIGKRFLLCHVYSGRDLIEVATFRGQPTGNNHTNNDGMIVRDNVWGDILTD 151
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+VR RDF+IN+L++ P +YD+ NG++DL LR L + ED R+LR
Sbjct: 152 VVR------RDFSINALYYQPLEGVLYDFCNGLNDLHNRTLRLLGDTKIRIEEDPVRLLR 205
Query: 234 GLRIAARLGLSFCKDID 250
LR A+L F K ++
Sbjct: 206 ALRFKAKLNFKFDKSLE 222
>gi|262172326|ref|ZP_06040004.1| poly(A) polymerase [Vibrio mimicus MB-451]
gi|261893402|gb|EEY39388.1| poly(A) polymerase [Vibrio mimicus MB-451]
Length = 457
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDEI 172
+IGRRF + + ++EV++F + +A E +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQSQNIAAQSEAG--MLLRDNVYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R+YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAEPIEYLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|170728128|ref|YP_001762154.1| poly(A) polymerase [Shewanella woodyi ATCC 51908]
gi|169813475|gb|ACA88059.1| poly(A) polymerase [Shewanella woodyi ATCC 51908]
Length = 421
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 144/287 (50%), Gaps = 29/287 (10%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL L GF+AYLVGG VRD+LL PKDFDV+T A ++I+R F ++GRRF +
Sbjct: 8 VLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKRLFRNCRLVGRRFRLAH 67
Query: 135 VHIKGSVIEVSSF--------ETVAK-HGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDF 185
+ VIEV++ E ++K + EG+ LL YG + D R RDF
Sbjct: 68 IVFGRDVIEVATLRGHHVDNEEKISKTNAEGR---LLRDNVYGTIDEDAER------RDF 118
Query: 186 TINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSF 245
T+N+L++D I+ Y G+ DL +R + + ED R+LR +R A +LG++
Sbjct: 119 TVNALYYDISDFSIHSYGGGLEDLHSRTIRMIGDPNTRYREDPVRMLRAVRFATKLGMTV 178
Query: 246 CKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL 305
++ ++ L+ ++ + +R+ E+ + G AE++ ++R + L L P L
Sbjct: 179 DEETAAPIYELAPLLKDIPAARMYEEVLKLFFNGQAENNFAMMRDFGLFAPLFPLVETLL 238
Query: 306 DQQA-GKITAENPMMLMRLFFNLDKLVSCDR---PADY---TLWVGL 345
+ A G T ML + N D V ++ PA + LW L
Sbjct: 239 TEDAKGPATK----MLQVIMKNTDARVQAEKTVTPAFFYAAILWYPL 281
>gi|437838690|ref|ZP_20846036.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|435298203|gb|ELO74443.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
Length = 472
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 135/289 (46%), Gaps = 23/289 (7%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S Q V + + I+R I + + VL L G++AYLVGG
Sbjct: 15 FCRKVLSREESEAEQAVARPHMTIIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGG 74
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 75 GVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 131
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG E+ +LL +G E D R RDFTINSL++ +
Sbjct: 132 GHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 185
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+L + + + L++ +
Sbjct: 186 DYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLL 245
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G + LR YNL + L P Y +
Sbjct: 246 NDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLFPTITRYFTENG 294
>gi|146310347|ref|YP_001175421.1| poly(A) polymerase [Enterobacter sp. 638]
gi|145317223|gb|ABP59370.1| poly(A) polymerase [Enterobacter sp. 638]
Length = 437
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 151/315 (47%), Gaps = 28/315 (8%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A +Q+R+ F
Sbjct: 11 ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDVTTSATPEQVRKLFRN 70
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG---------EGKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F + G G+ +LL +G E D
Sbjct: 71 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGAPADRTTSQRGQNGMLLRDNIFGSIEED 130
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + D+ G+ DL+ +R + + ED R+LR
Sbjct: 131 AQR------RDFTINSLYYSVADFSVRDFVGGVQDLKEGVIRLIGNPETRYREDPVRMLR 184
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+L + + + L++ I + +R+ E+ +L G + LLR +L
Sbjct: 185 AVRFAAKLNMQISAETAEPIPRLATLINDVPPARLFEEVLKLLQAGYGYETYKLLRENSL 244
Query: 294 LKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWVGL 345
+ L P Y + + ++PM M+ ++ N D + D PA W L
Sbjct: 245 FQPLFPSIVRYFTE-----SGDSPMERMIAQVLKNTDTRLHNDMRVNPAFLFAAMFWYPL 299
Query: 346 LSFHQALVSDPQDAF 360
L Q + + A+
Sbjct: 300 LETAQKIAQESGLAY 314
>gi|89901286|ref|YP_523757.1| poly(A) polymerase [Rhodoferax ferrireducens T118]
gi|89346023|gb|ABD70226.1| poly(A) polymerase [Rhodoferax ferrireducens T118]
Length = 535
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 138/268 (51%), Gaps = 35/268 (13%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V++ LK+ GF+AY+VGG VRDL++ PKDFDV T A +Q++ F
Sbjct: 34 GIDPKLVDERALNVVRTLKNAGFEAYVVGGAVRDLMVGLAPKDFDVATNATPEQVKGLFR 93
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSF---------ETVA-------------KHGE 155
R+ IIGRRF I V+ +G VIEVS+F E VA KH
Sbjct: 94 RAFIIGRRFRIVHVVYGRGREHEVIEVSTFRAYMDNAAAEQVAGNEKTSKSELAGMKHAV 153
Query: 156 GKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLR 215
+L +G E D VR RDFTIN++++DP + DY +GI D + +R
Sbjct: 154 DSSGRVLRDNVWGPQEEDAVR------RDFTINAMYYDPETQIVVDYHHGIKDSKDRVIR 207
Query: 216 TLIPAYLSFTEDCARILRGLRIAARL-GLSFCKDIDTAMHSLSSS--IERLDKSRIMMEL 272
+ + ED RI+R +R AA+L GL F + TA + S + + +SR+ E+
Sbjct: 208 MIGDPATRYREDPVRIIRAVRFAAKLSGLGFKLEAKTAAPLIKSQELLAEVPQSRLFDEM 267
Query: 273 NYMLSYGAAESSICLLRRYNLLKILLPF 300
+L G A +SI L+ + + + P
Sbjct: 268 LKLLQTGHALASIEQLKALGMARGIYPL 295
>gi|218710491|ref|YP_002418112.1| poly(A) polymerase [Vibrio splendidus LGP32]
gi|218323510|emb|CAV19687.1| Poly(A) polymerase [Vibrio splendidus LGP32]
Length = 472
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 12/243 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF A+LVGG VRD+LL PKDFD+ T A +QI+ F
Sbjct: 50 ISRKQISDNALKVLYRLNGAGFDAFLVGGGVRDILLGSQPKDFDIATNATPEQIKHLFRN 109
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKH------GEGKETVLLSQIPYGCDEIDLVR 176
+IGRRF + + +IEV++F + + E +LL YG + D R
Sbjct: 110 CRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSKNVSAQSDEGMLLRDNVYGNVDEDAER 169
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFTIN+++++ I+DYA G+ DL +R + + ED R+LR +R
Sbjct: 170 ------RDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRLIGDPETRYREDPVRMLRAMR 223
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
AA+L +D + L+ ++ + +R+ E +L G + L+R YNL +
Sbjct: 224 FAAKLDFDIEEDTADPIEELAHLLKDIPAARLYEESLKLLQSGHGLETYHLMREYNLFQQ 283
Query: 297 LLP 299
+ P
Sbjct: 284 MFP 286
>gi|153825676|ref|ZP_01978343.1| polyA polymerase [Vibrio cholerae MZO-2]
gi|149740613|gb|EDM54722.1| polyA polymerase [Vibrio cholerae MZO-2]
Length = 457
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----------VLLSQIPYGCDEI 172
+IGRRF + + ++EV++F H E ++ +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFR--GHHQESSQSQNIAAQSEAGMLLRDNVYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R+YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAAPIEQLALLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|300715373|ref|YP_003740176.1| poly(A)polymerase [Erwinia billingiae Eb661]
gi|299061209|emb|CAX58317.1| Poly(A)polymerase [Erwinia billingiae Eb661]
Length = 480
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 144/289 (49%), Gaps = 20/289 (6%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNL-GITRAMIPQPSWVVLKILKSQGFQAYLVG 90
CR++ S ++ EV V + TV R+ I+R I + + VL L G++AYLVG
Sbjct: 15 FCRKVLSREDEAPAAEVGVVHQMTVIPRDRHTISRKDISENALKVLYRLNKAGYEAYLVG 74
Query: 91 GCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF--- 147
G VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 75 GGVRDLLLGKKPKDFDVTTNATPDQMRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH 134
Query: 148 ---ETVAK----HGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
E VA+ G+ +LL +G E D R RD TINSL++ +
Sbjct: 135 HEAEQVAEDRNTSQRGQNGMLLRDNIFGTIEDDAQR------RDLTINSLYYSVSDFSVR 188
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G++DL+ +R + + ED R+LR +R AA+L +S + + L++ +
Sbjct: 189 DYVGGLNDLQQGIVRLIGDPETRYREDPVRMLRVVRFAAKLDMSVAAETAEPIPRLATLL 248
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G S+ LR Y L + L P Y ++
Sbjct: 249 HDIPPARLFEETLKLLQAGYGYSTYLQLREYQLFQPLFPTITRYFTEKG 297
>gi|424864520|ref|ZP_18288423.1| poly(A) polymerase [SAR86 cluster bacterium SAR86B]
gi|400759266|gb|EJP73448.1| poly(A) polymerase [SAR86 cluster bacterium SAR86B]
Length = 408
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 13/231 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+K LK ++AYLVGGCVRD L PKDFDV T A Q+RR F S IIGRRF +
Sbjct: 14 AIKKLKKNNYEAYLVGGCVRDSLTGITPKDFDVATNATPDQVRRIFKSSRIIGRRFKLVH 73
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETVLLSQIP-------YGCDEIDLVRWRNSIHRDFTI 187
++ +IE+++F G + ++ + +G D R RDFT+
Sbjct: 74 LYSHNELIEIATFRAGKNSLSGDQNLVTDNLGKIIRDNVWGSINEDCQR------RDFTV 127
Query: 188 NSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCK 247
N+L++ P +I D+ NG+ D+R ++ ++ F ED R LR +R + +LG
Sbjct: 128 NALYYCPISKEIKDFNNGLLDIRKKRIVSIGDPLQRFEEDPVRSLRAIRFSTKLGFKLDT 187
Query: 248 DIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
I A++ + + +R+ E+ + +G+AE + L ++NLLK L+
Sbjct: 188 HIKHAIYDKGHLLFGVSNARLFDEMCKLFLHGSAEKNFLKLHKFNLLKYLV 238
>gi|300309964|ref|YP_003774056.1| tRNA nucleotidyltransferase/poly(A) polymerase [Herbaspirillum
seropedicae SmR1]
gi|300072749|gb|ADJ62148.1| tRNA nucleotidyltransferase/poly(A) polymerase protein
[Herbaspirillum seropedicae SmR1]
Length = 534
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 124/231 (53%), Gaps = 8/231 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI +++ + V + L+ G++A++VGG VRDLLL PKDFDV T A +Q+++ F
Sbjct: 52 GIDPSLVSPNAVRVTQTLQEAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFR 111
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE--TVLLSQIPYGCDEIDLVRWRN 179
R+ IIGRRF I V +IEV++F + K+ +L +G D R
Sbjct: 112 RAFIIGRRFQIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATR--- 168
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFTIN++++DP + DY GI+D+R KLR + + ED R+LR +R AA
Sbjct: 169 ---RDFTINAMYYDPASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAA 225
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+L + + ++ I+ + +R+ E+ +L G A + + LR+
Sbjct: 226 KLKFTIDPASSAPIRVMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRK 276
>gi|270156669|ref|ZP_06185326.1| poly(A) polymerase [Legionella longbeachae D-4968]
gi|269988694|gb|EEZ94948.1| poly(A) polymerase [Legionella longbeachae D-4968]
Length = 402
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 116/229 (50%), Gaps = 10/229 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+L L GFQAY+VGG VRDLLL + PKDFDV T A Q++ F IIGRRF +
Sbjct: 1 MLNRLIGAGFQAYIVGGSVRDLLLHKAPKDFDVATNATPNQVKSLFRNGRIIGRRFKLVH 60
Query: 135 VHIKGSVIEVSSFETVAKHGEGKET----VLLSQIPYGCDEIDLVRWRNSIHRDFTINSL 190
+ +IEV++F + E + T +L+ YG +D WR RDFTINSL
Sbjct: 61 ILFHREIIEVATFRSHVALDENQVTNERGMLVRDNAYGS--LDEDAWR----RDFTINSL 114
Query: 191 FFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDID 250
+++ + I D+ G+ D+ +R + + ED R+LR +R +A+L +
Sbjct: 115 YYNINDSSIIDFTGGVKDVEKRLIRMIGDPIKRYQEDPVRMLRAIRFSAKLNFKLAAETA 174
Query: 251 TAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+S I + SR+ E+ + G AE+ LL +Y L L P
Sbjct: 175 APFPEISHLITHVSNSRLFDEMTKLYQCGNAETVQKLLIQYGLFGHLFP 223
>gi|153803792|ref|ZP_01958378.1| polyA polymerase [Vibrio cholerae MZO-3]
gi|124120672|gb|EAY39415.1| polyA polymerase [Vibrio cholerae MZO-3]
Length = 351
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----------VLLSQIPYGCDEI 172
+IGRRF + + ++EV++F H E ++ +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFR--GHHQESSQSQNIAAQSEAGMLLRDNVYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML G + L+R+YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|444353078|ref|YP_007389222.1| Poly(A) polymerase (EC 2.7.7.19) [Enterobacter aerogenes EA1509E]
gi|443903908|emb|CCG31682.1| Poly(A) polymerase (EC 2.7.7.19) [Enterobacter aerogenes EA1509E]
Length = 454
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 157/332 (47%), Gaps = 33/332 (9%)
Query: 48 VDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDV 107
V+ ++ + I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV
Sbjct: 14 VEQTHMTVIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDV 73
Query: 108 ITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------G 156
T+A Q+R+ F ++GRRF + V +IEV++F H E G
Sbjct: 74 TTSATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTNDRVTSQRG 130
Query: 157 KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
+ +LL +G E D R RDFTINSL++ + DY G+ DL+ +R
Sbjct: 131 QNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMRDLQEGVIRL 184
Query: 217 LIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYML 276
+ + ED R+LR +R AA+L + + + L++ + + +R+ E+ +L
Sbjct: 185 IGDPETRYREDPVRMLRAVRFAAKLHMRISAESAEPIPRLATLLHDVPPARLFEEVLKLL 244
Query: 277 SYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
G + LLR Y+L + L P Y ++ ++PM +++++ N D + D
Sbjct: 245 QAGYGYETYQLLREYSLFQPLFPTITRYFTER-----GDSPMERIIIQVLKNTDNRLHND 299
Query: 335 ---RPA---DYTLWVGLLSFHQALVSDPQDAF 360
PA W LL Q + + A+
Sbjct: 300 MRVNPAFLFAVMFWYPLLEMAQKIAQESGLAY 331
>gi|425113461|ref|ZP_18515316.1| poly(A) polymerase [Escherichia coli 8.0566]
gi|425118212|ref|ZP_18519966.1| poly(A) polymerase [Escherichia coli 8.0569]
gi|432659410|ref|ZP_19895075.1| Poly(A) polymerase [Escherichia coli KTE111]
gi|408574027|gb|EKK49829.1| poly(A) polymerase [Escherichia coli 8.0566]
gi|408574638|gb|EKK50404.1| poly(A) polymerase [Escherichia coli 8.0569]
gi|431204232|gb|ELF02805.1| Poly(A) polymerase [Escherichia coli KTE111]
Length = 454
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 153/323 (47%), Gaps = 35/323 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF----------ETVAKHGEGKETVLLSQIPYGCDE 171
++GRRF + V +IEV++F T ++HG+ +LL +G E
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQHGQNG--MLLRDNIFGSIE 144
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 145 EDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRM 198
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+LG+ + + L++ + + +R+ E +L G + LL Y
Sbjct: 199 LRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEY 258
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWV 343
+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 259 HLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWY 313
Query: 344 GLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 314 PLLETAQKIAQESGLTYHDAFAL 336
>gi|365092993|ref|ZP_09330069.1| poly(A) polymerase [Acidovorax sp. NO-1]
gi|363414798|gb|EHL21937.1| poly(A) polymerase [Acidovorax sp. NO-1]
Length = 533
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 136/262 (51%), Gaps = 23/262 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V+ LK GF+AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 36 GINPELVDRRAADVVATLKQAGFEAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFR 95
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKETVLLSQIPYGCDEI 172
R+ IIG+RF I VH +G VIEVS+F A G E +Q+ +
Sbjct: 96 RAFIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAGQVAGNEKTSKAQLSGMQHAV 155
Query: 173 D----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D ++R W ++ RDFT+N++++DP + DY G+ D + LR +
Sbjct: 156 DASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPVSQIVVDYHKGLQDAKKKTLRMIGDPA 215
Query: 222 LSFTEDCARILRGLRIAARLG-LSFCKDIDTAMHSLSSS--IERLDKSRIMMELNYMLSY 278
+ ED RI+R +R AA+L L F D +A + S + + +SR+ E+ +L
Sbjct: 216 TRYREDPVRIIRAVRFAAKLSPLGFSIDAKSAAPLVQSQTLLAEVPQSRMFDEMLKLLQT 275
Query: 279 GAAESSICLLRRYNLLKILLPF 300
G A ++I LR+ + K + P
Sbjct: 276 GHAIATIDQLRKLGMSKGIYPL 297
>gi|289667258|ref|ZP_06488333.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 455
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 137/289 (47%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T+A ++++ F
Sbjct: 33 ISRKDISPNALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F + G G + L+ YG E D +R
Sbjct: 93 CRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEDDAIR-- 150
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + A L + ED R+LR +R+A
Sbjct: 151 ----RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDAELRYQEDPVRMLRAVRLA 206
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + L+ + +R+ E+ + G SS L RY L L
Sbjct: 207 AKLDFEIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVSSFEGLERYGLFGALF 266
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + A M++ N D V+ D P LL
Sbjct: 267 PESAAALKSNRSGALRA----MVLEGLRNTDARVANDEPVSPAFLFALL 311
>gi|206578248|ref|YP_002240384.1| poly(A) polymerase I [Klebsiella pneumoniae 342]
gi|288937089|ref|YP_003441148.1| poly(A) polymerase [Klebsiella variicola At-22]
gi|290512511|ref|ZP_06551877.1| poly(A) polymerase [Klebsiella sp. 1_1_55]
gi|206567306|gb|ACI09082.1| poly(A) polymerase [Klebsiella pneumoniae 342]
gi|288891798|gb|ADC60116.1| poly(A) polymerase [Klebsiella variicola At-22]
gi|289774852|gb|EFD82854.1| poly(A) polymerase [Klebsiella sp. 1_1_55]
Length = 453
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 128/259 (49%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG T +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTTDRVTSQQGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E+ +L G + LLR
Sbjct: 198 MLRAVRFAAKLDMRISPETAEPLPRLATLLHDVPPARLFEEVLKLLQAGYGYQTYMLLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
YNL + L P Y ++
Sbjct: 258 YNLFQPLFPTITRYFTERG 276
>gi|71279421|ref|YP_270960.1| polyA polymerase [Colwellia psychrerythraea 34H]
gi|71145161|gb|AAZ25634.1| polyA polymerase [Colwellia psychrerythraea 34H]
Length = 474
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 121/249 (48%), Gaps = 18/249 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R ++ + VL L GF AYLVGG VRD+LL PKDFD+ T A +I+ F
Sbjct: 42 VSRKLLSPNALKVLYRLNKGGFDAYLVGGGVRDILLGFKPKDFDIATNATPDEIKELFRN 101
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHG------------EGKETVLLSQIPYGCD 170
+IGRRF + + +IEV++F + + ++ +LL YG
Sbjct: 102 CRLIGRRFRLAHIVFGREIIEVATFRGHHDNASEQEKSCKKTSKQSEDGMLLRDNIYGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTIN+L++ K+YD+ANG+ D+ +R + + ED R
Sbjct: 162 EEDAER------RDFTINALYYSAKDFKVYDFANGVQDVNDKVIRLIGDPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R A +L + D + LS+ + + +R+ E M G A ++ LR
Sbjct: 216 MLRAIRFATKLDMQISDDTKAPIKELSTLMANIPAARLFEEFLKMFIAGKAVANFEQLRS 275
Query: 291 YNLLKILLP 299
YNL P
Sbjct: 276 YNLFGYFFP 284
>gi|399020004|ref|ZP_10722145.1| poly(A) polymerase [Herbaspirillum sp. CF444]
gi|398096377|gb|EJL86701.1| poly(A) polymerase [Herbaspirillum sp. CF444]
Length = 473
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 142/293 (48%), Gaps = 14/293 (4%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + V + L+ GF+A++VGG VRDLLL PKDFDV T A +Q+++ F
Sbjct: 32 GIDPQLVSPNAIRVTQTLQDAGFKAFIVGGAVRDLLLSVKPKDFDVATNATPEQVKQLFR 91
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE--TVLLSQIPYGCDEIDLVRWRN 179
R+ IIGRRF I V +IEV++F + K+ +L +G D VR
Sbjct: 92 RAFIIGRRFQIVHVMFGQELIEVTTFRGASADMAPKDEHGRVLRDNTFGEQHEDAVR--- 148
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFTIN++++DP + DY GI+D+R LR + + ED R+LR +R AA
Sbjct: 149 ---RDFTINAMYYDPASQSVLDYHGGIADIRAKTLRIIGVPEERYREDPVRMLRVVRFAA 205
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+L S + ++ I + +R+ E+ +L G A + + LR+ L LLP
Sbjct: 206 KLKFSIDAATGAPIAVMAPLINNVPAARVFDEMLKLLMSGHALACLQQLRKQGLHHGLLP 265
Query: 300 FHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFHQAL 352
L+Q G+ + N D + +P L +HQ L
Sbjct: 266 LLDVVLEQPLGE------KFVTLALANTDARIKQGKPVSPGFLFASLLWHQVL 312
>gi|383812734|ref|ZP_09968161.1| poly(A) polymerase I [Serratia sp. M24T3]
gi|383298144|gb|EIC86451.1| poly(A) polymerase I [Serratia sp. M24T3]
Length = 511
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 130/268 (48%), Gaps = 20/268 (7%)
Query: 47 EVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFD 106
E N + I+R I + VL L G++AYLVGG VRDLLL + PKDFD
Sbjct: 66 ETRSENMTVIPRDGHDISRRDISDNALKVLYRLNKSGYEAYLVGGGVRDLLLHKKPKDFD 125
Query: 107 VITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET------- 159
+ T A +Q+R+ F ++GRRF + V +IEV++F H + +ET
Sbjct: 126 ITTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--GHHEQVQETDDKNLSQ 183
Query: 160 -----VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKL 214
+LL +G E D R RDFTINSL++ + DY G+ DL+ +
Sbjct: 184 QAQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYGISDFTLRDYTGGLKDLKDGVI 237
Query: 215 RTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNY 274
R + + ED R+LR +R AA+L ++ + + L++ ++ + +R+ E
Sbjct: 238 RLIGDPETRYREDPVRMLRAVRFAAKLDMTISPETAEPIPRLATLLQEIPPARLFEESLK 297
Query: 275 MLSYGAAESSICLLRRYNLLKILLPFHA 302
+L G + LLR Y L + L P A
Sbjct: 298 LLQAGYGFRTAQLLREYQLFQPLFPLIA 325
>gi|409248608|ref|YP_006884449.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|320084436|emb|CBY94229.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 472
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 134/289 (46%), Gaps = 23/289 (7%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S Q V + + I+R I + + VL L G++AYLVGG
Sbjct: 15 FCRKVLSREESEAEQAVARPHMTIIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGG 74
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 75 GVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 131
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG E +LL +G E D R RDFTINSL++ +
Sbjct: 132 GHHEGSENDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 185
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+L + + + L++ +
Sbjct: 186 DYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLL 245
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G + LR YNL + L P Y +
Sbjct: 246 NDIPPARLFEESLKLLQAGNGFETYQQLREYNLFQPLFPTITRYFTENG 294
>gi|149910512|ref|ZP_01899152.1| polyA polymerase [Moritella sp. PE36]
gi|149806472|gb|EDM66444.1| polyA polymerase [Moritella sp. PE36]
Length = 488
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 133/256 (51%), Gaps = 19/256 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
+ +I + + VL L G+QAYLVGG VRD+ + + PKDFD+ T A +QI++ FH
Sbjct: 62 VNHNLISENALKVLYRLHKSGYQAYLVGGGVRDIFIGQEPKDFDIATNAEPEQIKKLFHN 121
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF-----------ETVAKHGEGKETVLLSQIPYGCDE 171
++GRRF + + +IEV++F + +K +G +LL YG
Sbjct: 122 CRLVGRRFRLAHILFGRDMIEVATFRGHHVEEQEQNQQTSKQSDG--GMLLRDNVYGNIS 179
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFT+N+L+++ +YD+A G++DL+ +LR + + ED R+
Sbjct: 180 EDAER------RDFTVNALYYNIADRAVYDFAGGLADLQSKQLRLIGDPETRYREDPVRM 233
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R +A+L + + + L++ ++ + +R+ E + G ++ L++ +
Sbjct: 234 LRAVRFSAKLDMQISPEAKAPIKQLANLLQSIPAARLFEETLKLFLNGHGLATYKLMKEH 293
Query: 292 NLLKILLPFHAAYLDQ 307
L + L P + Y ++
Sbjct: 294 GLFQPLFPLVSKYQNE 309
>gi|351728897|ref|ZP_08946588.1| poly(A) polymerase [Acidovorax radicis N35]
Length = 534
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 136/262 (51%), Gaps = 23/262 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V+ LK GF+AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 36 GINPELVDRRAAEVVATLKQAGFEAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFR 95
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKETVLLSQIPYGCDEI 172
R+ IIG+RF I VH +G VIEVS+F A G E +Q+ +
Sbjct: 96 RAFIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAGQVAGNEKTSKAQLSGMQHAV 155
Query: 173 D----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D ++R W ++ RDFT+N++++DP + DY G+ D + LR +
Sbjct: 156 DASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPVSQIVVDYHKGLQDAKKKTLRMIGDPA 215
Query: 222 LSFTEDCARILRGLRIAARL-GLSFCKDIDTAMHSLSSS--IERLDKSRIMMELNYMLSY 278
+ ED RI+R +R AA+L L F + TA + S + + +SR+ E+ +L
Sbjct: 216 TRYREDPVRIIRAVRFAAKLSALGFSIEAKTAAPLVQSQTLLAEVPQSRMFDEMLKLLQT 275
Query: 279 GAAESSICLLRRYNLLKILLPF 300
G A +++ LR+ + K + P
Sbjct: 276 GHAIATVEQLRKLGMAKGIYPL 297
>gi|395003912|ref|ZP_10388007.1| poly(A) polymerase [Acidovorax sp. CF316]
gi|394318138|gb|EJE54602.1| poly(A) polymerase [Acidovorax sp. CF316]
Length = 547
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 134/262 (51%), Gaps = 23/262 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V+ LK G++AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 36 GINPELVDRRAAEVVATLKQAGYEAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKGLFR 95
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKETV---LLSQIPYGC 169
R+ IIG+RF I VH +G VIEVS+F A G E LS + +
Sbjct: 96 RAFIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAGQVAGNEKTSKQQLSGMQHAV 155
Query: 170 DEIDLVR----W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D V W ++ RDFT+N++++DP + DY GI D + LR +
Sbjct: 156 DASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPVSQVVVDYHKGIQDAKKKTLRMIGDPA 215
Query: 222 LSFTEDCARILRGLRIAARL-GLSFCKDIDTAMHSLSSS--IERLDKSRIMMELNYMLSY 278
+ ED RI+R +R AA+L L F + TA + S + + +SR+ E+ +L
Sbjct: 216 TRYREDPVRIIRAVRFAAKLSALGFTIEAKTAAPLVQSQTLLADVPQSRMFDEMLKLLQT 275
Query: 279 GAAESSICLLRRYNLLKILLPF 300
G A ++I L++ + K + P
Sbjct: 276 GHAIATIAQLKKLGMAKGIYPL 297
>gi|257455099|ref|ZP_05620337.1| poly(A) polymerase [Enhydrobacter aerosaccus SK60]
gi|257447432|gb|EEV22437.1| poly(A) polymerase [Enhydrobacter aerosaccus SK60]
Length = 742
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 126/246 (51%), Gaps = 10/246 (4%)
Query: 57 DSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQI 116
D++ LG+ +A +P V+ L GF+AY+VGG VRD LL PKDFD +T A QI
Sbjct: 32 DAKKLGLNKADLPNSIKEVISTLTQAGFEAYIVGGGVRDALLGLKPKDFDAVTNATPNQI 91
Query: 117 RRQF-HRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--GKETVLLSQIPYGCDEID 173
+ F R IIGRRF +C V+ +IEV++F K ++ +++ +G D
Sbjct: 92 KEVFGKRCRIIGRRFQLCHVYSGRDMIEVATFRAPPKDNNHVTEDGMIMRDNVWGDIYQD 151
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+VR RDF+IN+L++ PF + +YD+ G+ D+ +R L ED R+LR
Sbjct: 152 VVR------RDFSINALYYQPFDDIVYDFCGGLKDVENRTIRLLGDTQKRVEEDPVRLLR 205
Query: 234 GLRIAARLGLSFCKDIDTAMHSLS-SSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
LR A+L F ++ ++ + + + ++ R+ E M + G + LL Y
Sbjct: 206 ALRFKAKLQFDFDNALNQQFNAQNWALLAQVSPHRLYDETQKMFTGGYLVPMLPLLFDYG 265
Query: 293 LLKILL 298
LL
Sbjct: 266 AFSQLL 271
>gi|374812485|ref|ZP_09716222.1| polyA polymerase family protein [Treponema primitia ZAS-1]
Length = 408
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 128/238 (53%), Gaps = 14/238 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+ + + + +++ L++ GF+ Y+VGG VRDL+LR+ PKDFD+++ A+ +I++ F
Sbjct: 26 GISFSDVDSDAVYIIERLRANGFETYIVGGAVRDLMLRKKPKDFDIVSEASPTRIKKIFR 85
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
+ +IGRRF + V+ + EVS+F ++ K G T +G E D++R
Sbjct: 86 NARVIGRRFRLVHVYFGPKIFEVSTFRSL-KDGSTSNT-------FGTIEEDVLR----- 132
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RDF+IN+LF+DP + DY G+ D+R +R +IP F +D R++R ++ AA
Sbjct: 133 -RDFSINALFYDPGKQVVVDYVGGMKDIRNKLIRPIIPLSFIFKDDPVRMIRAVKYAATT 191
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
G + + +S + + SR+ E+ ++ A L + L + L P
Sbjct: 192 GFKIPLTLRWKIKKQASLLAPVSPSRLTEEIFKIIHSPCAAEITESLEYFGLYRYLQP 249
>gi|168699746|ref|ZP_02732023.1| metal dependent phosphohydrolase [Gemmata obscuriglobus UQM 2246]
Length = 410
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 117/231 (50%), Gaps = 15/231 (6%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+++ L+S GF A GGCVRD L VP+D+DV T+A +Q+R F R IG F + +
Sbjct: 1 MVRTLQSAGFTALWAGGCVRDEFLGLVPEDYDVATSARPEQLRPLFRRRNEIGAHFGVVQ 60
Query: 135 V----HIKGS--VIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTIN 188
V G+ IEV+SF + + +G+ + + E D R RDFT+N
Sbjct: 61 VIGPKKADGTWHTIEVASFRSDGAYTDGRRP---DTVTFSTPEEDAQR------RDFTVN 111
Query: 189 SLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKD 248
+FFDP N++ D+ G +DL LR + + FTED RILR R+A R GL+
Sbjct: 112 GMFFDPVRNELLDFVGGRADLDAKVLRAIGDPFARFTEDKLRILRAARMATRFGLAIDPT 171
Query: 249 IDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
A ++ + + R+ EL + ++ + LLR L++ +LP
Sbjct: 172 TRDAAQQMAPQVSVVSAERVAEELRKLFAHPNRTRGLALLRELGLIEPILP 222
>gi|416936956|ref|ZP_11934122.1| poly(A) polymerase [Burkholderia sp. TJI49]
gi|325524972|gb|EGD02896.1| poly(A) polymerase [Burkholderia sp. TJI49]
Length = 511
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 29/252 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++I + + V L+ GF+A++VGG VRDLLL PKDFDV T A +++R F
Sbjct: 61 GIDPSLISRNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFR 120
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVA-----------------------KHGEGKE 158
R+ +IGRRF I V +IEVS+F + H
Sbjct: 121 RARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPEAAAAEPPKRLKRDELDRRTHAVDAS 180
Query: 159 TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLI 218
+L +G D R RDFTIN++++DP + DY +G++D+R LR +
Sbjct: 181 GRVLRDNVWGEQHEDAAR------RDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIG 234
Query: 219 PAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSY 278
+ ED R+LR +R AA+LG +H+L+ I + +R+ E+ +L
Sbjct: 235 DPATRYREDPVRMLRVVRFAAKLGFEIEPHTREPIHALADLINNVPAARLFDEMLKLLLS 294
Query: 279 GAAESSICLLRR 290
G A + + LR+
Sbjct: 295 GHALACLQRLRK 306
>gi|417402091|ref|ZP_12157550.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353629203|gb|EHC77064.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
Length = 464
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLKEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 258 YHLFQPLFPTITRYFTENG 276
>gi|238022809|ref|ZP_04603235.1| hypothetical protein GCWU000324_02721 [Kingella oralis ATCC 51147]
gi|237866012|gb|EEP67148.1| hypothetical protein GCWU000324_02721 [Kingella oralis ATCC 51147]
Length = 594
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 121/241 (50%), Gaps = 6/241 (2%)
Query: 70 QPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRR 129
Q + VL+ L GF+AYLVGG VRDLLL PKDFDV T+A +Q+ R F RS IIGRR
Sbjct: 185 QAALRVLESLHRAGFEAYLVGGAVRDLLLGIEPKDFDVATSATPEQVHRLFRRSRIIGRR 244
Query: 130 FPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINS 189
F I V IEVS+F + + + ++ YG E D +R RDFT N+
Sbjct: 245 FQIVHVMQGSETIEVSTFRSGGRVMQNASGRIMRDNAYGSLEQDAMR------RDFTCNA 298
Query: 190 LFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDI 249
L++D ++ D+ G D+ +L + A + ED R+LR R++ +LG +
Sbjct: 299 LYYDVAAQQVLDFHGGWEDVAVRRLVMIGDAAERYQEDPVRMLRAARLSGKLGFAVEAAT 358
Query: 250 DTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ + + +R+ EL +L G A + LRR L + + P +A L
Sbjct: 359 AAPIGEMGLLLRHEPVARLFDELLKILLSGNAAGCLAALRRLGLTEAVHPLLSAMLRAAD 418
Query: 310 G 310
G
Sbjct: 419 G 419
>gi|145629073|ref|ZP_01784872.1| polyA polymerase [Haemophilus influenzae 22.1-21]
gi|144978576|gb|EDJ88299.1| polyA polymerase [Haemophilus influenzae 22.1-21]
Length = 292
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 114/205 (55%), Gaps = 18/205 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS-EIIGRRFPIC 133
V++ L+ QGF+AY+VGGC+RDLLL + PKDFDV T A +QI+ F R ++GRRF +
Sbjct: 96 VVEKLQRQGFEAYIVGGCIRDLLLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLA 155
Query: 134 RVHIKGSVIEVSSFETVAKHGEGK---------ETVLLSQIPYGCDEIDLVRWRNSIHRD 184
+ +IEV++F A H + + E +LL YG E D R RD
Sbjct: 156 HIMFGRDIIEVATFR--ANHSDARNENQAKQSNEGMLLRDNVYGTIEQDAAR------RD 207
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FT+N+L+++P N + DY GI DL+ KLR + + ED R+LR +R A+L +
Sbjct: 208 FTVNALYYNPQDNTLRDYFEGIKDLKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMF 267
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIM 269
K + + L+ I++ S ++
Sbjct: 268 LEKPSEQPIRELAPFIKKYSTSSLI 292
>gi|417515384|ref|ZP_12178942.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353655441|gb|EHC96451.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
Length = 454
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLKEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 258 YHLFQPLFPTITRYFTENG 276
>gi|350544805|ref|ZP_08914350.1| Poly(A) polymerase [Candidatus Burkholderia kirkii UZHbot1]
gi|350527405|emb|CCD38165.1| Poly(A) polymerase [Candidatus Burkholderia kirkii UZHbot1]
Length = 525
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 133/266 (50%), Gaps = 16/266 (6%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++I + + V L+ G +A++VGG VRDLLL PKDFDV T A Q+++ F
Sbjct: 63 GIDPSLILKNAVRVTDGLQHAGHRAFIVGGAVRDLLLGVAPKDFDVATDATPDQVQKLFR 122
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF--------ETVAKHGEGKETVLLSQIPYGCDEID 173
R+ IIGRRF I V +IE S+F E V++ + L + D
Sbjct: 123 RARIIGRRFQIVHVQFGQEIIETSTFRALMDAPPEPVSEPPRRLKRGELDNRTHAVDASG 182
Query: 174 LV--------RWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFT 225
V + ++ RDFTIN++++DP + DY +G++D+R LR + +
Sbjct: 183 RVLRDNVWGKQHEDATRRDFTINAMYYDPATQTVLDYHDGMADIRARLLRMIGDPATRYR 242
Query: 226 EDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285
ED R+LR +R AA+LG + + L+ + + +R+ E+ +L G A + +
Sbjct: 243 EDPVRMLRVVRFAAKLGFEIDEATRAPIKDLADLMNNVPAARLFDEMLKLLLSGHALACL 302
Query: 286 CLLRRYNLLKILLPFHAAYLDQQAGK 311
LR+ L +LP L+Q G+
Sbjct: 303 TRLRQEGLHHGVLPLLDVVLEQPHGE 328
>gi|336248784|ref|YP_004592494.1| poly(A) polymerase I [Enterobacter aerogenes KCTC 2190]
gi|334734840|gb|AEG97215.1| poly(A) polymerase I [Enterobacter aerogenes KCTC 2190]
Length = 436
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 152/318 (47%), Gaps = 33/318 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A Q+R+ F
Sbjct: 10 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPDQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFRG---HHEGHTNDRVTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMRDLQEGVIRLIGDPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E+ +L G + LLR
Sbjct: 181 MLRAVRFAAKLHMRISAESAEPIPRLATLLHDVPPARLFEEVLKLLQAGYGYETYQLLRE 240
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y ++ ++PM +++++ N D + D PA W
Sbjct: 241 YSLFQPLFPTITRYFTER-----GDSPMERIIIQVLKNTDNRLHNDMRVNPAFLFAVMFW 295
Query: 343 VGLLSFHQALVSDPQDAF 360
LL Q + + A+
Sbjct: 296 YPLLEMAQKIAQESGLAY 313
>gi|411012282|ref|ZP_11388611.1| poly(A) polymerase [Aeromonas aquariorum AAK1]
Length = 469
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 127/249 (51%), Gaps = 14/249 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFD+ T A +QI+ F
Sbjct: 33 ISRKEISENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKSLFSN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFE------TVAKH--GEGKETVLLSQIPYGCDEIDL 174
+IGRRF + + VIEV++F +KH + E +LL YG E D
Sbjct: 93 CRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDA 152
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++ ++D+ G+ DL KL + + ED R+LR
Sbjct: 153 ER------RDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRA 206
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L ++ + L+ ++ + +R+ E + G A ++ LLR Y L
Sbjct: 207 VRFAAKLDMTISPRTAAPIKELAPLLQDIPAARLFEETLKLFLAGDALATYKLLREYGLF 266
Query: 295 KILLPFHAA 303
+ L P AA
Sbjct: 267 QQLFPQVAA 275
>gi|378958339|ref|YP_005215825.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|374352211|gb|AEZ43972.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
Length = 454
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHNEGSESDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 258 YHLFQPLFPTITRYFTENG 276
>gi|329119544|ref|ZP_08248228.1| poly(A) polymerase [Neisseria bacilliformis ATCC BAA-1200]
gi|327464331|gb|EGF10632.1| poly(A) polymerase [Neisseria bacilliformis ATCC BAA-1200]
Length = 467
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 6/222 (2%)
Query: 79 LKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIK 138
L+ G++AY+VGG VRDLL+ PKDFDV T A +++R F RS IIGRRF I V +
Sbjct: 63 LQQAGYEAYVVGGAVRDLLIGAQPKDFDVATDATPEEVRALFRRSRIIGRRFRIVHVQVG 122
Query: 139 GSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNK 198
IEV++F + ++ ++ YG D R RDFT N+L+FDP +
Sbjct: 123 PETIEVTTFRGNGGAVQNEQGRIMKDNTYGTLAEDAGR------RDFTCNALYFDPVKRE 176
Query: 199 IYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSS 258
I+D+ +G+ D+R ++ + + ED RILR +R+A +LG + + +
Sbjct: 177 IHDFHHGVQDVRQRRIVMIGNPAERYQEDPVRILRAIRLAGKLGFTIEERTAAPAADYAG 236
Query: 259 SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
++ +R+ E+ +L G A + +R + + P
Sbjct: 237 RLKEEPPARLFDEITKLLFSGHAGRCLGQIRALGIAARIHPL 278
>gi|115311613|sp|Q8Z9C3.2|PCNB_SALTI RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein; Flags: Precursor
Length = 465
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 135/289 (46%), Gaps = 23/289 (7%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S Q V + + I+R I + + VL L G++AYLVGG
Sbjct: 8 FCRKVLSREESEAEQAVARPHMTIIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGG 67
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 68 GVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 124
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG E+ +LL +G E D R RDFTINSL++ +
Sbjct: 125 GHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 178
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+L + + + L++ +
Sbjct: 179 DYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLL 238
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G + LR Y+L + L P Y +
Sbjct: 239 NDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 287
>gi|407715693|ref|YP_006836973.1| polynucleotide adenylyltransferase, PcnB [Cycloclasticus sp. P1]
gi|407256029|gb|AFT66470.1| Polynucleotide adenylyltransferase, PcnB [Cycloclasticus sp. P1]
Length = 434
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 131/268 (48%), Gaps = 16/268 (5%)
Query: 61 LGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQF 120
LG++ + + + + L GF+AYLVGGCVRDLLL PKDFDV T A ++++ F
Sbjct: 15 LGLSADKLDRHAVSITDRLVKAGFEAYLVGGCVRDLLLGLHPKDFDVSTNAEPEEVQALF 74
Query: 121 HRSEIIGRRFPICRVHIKGSVIEVSSFETV-AKHGEG-----KETVLLSQIPYGCDEIDL 174
+IGRRF + +H +IEV++F KH + ++ LL YG E D
Sbjct: 75 KNCRLIGRRFRLAHIHFGRHIIEVATFRGPHVKHDKNDSHAHRDGRLLRDNVYGTLEEDA 134
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
WR RDFT+N+L+ DP + DY GI D + LR + F ED R+LR
Sbjct: 135 --WR----RDFTVNALYLDPKKKTVIDYVGGIKDHQNRVLRLMGDPVTRFKEDPVRLLRA 188
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A+L D M ++ ++ + +R+ E + A LR+Y L
Sbjct: 189 VRFQAKLNFQIENDTAAPMLEMAPLLKDIPSARLYDETLKLFLNTDANQIFDALRQYGLF 248
Query: 295 KILLPFHAAYLDQQAGKITAENPMMLMR 322
+ L P D K T++ P+ L++
Sbjct: 249 EALFP----QTDLCLKKATSDKPLGLLK 272
>gi|343494372|ref|ZP_08732634.1| poly(A) polymerase [Vibrio nigripulchritudo ATCC 27043]
gi|342825277|gb|EGU59776.1| poly(A) polymerase [Vibrio nigripulchritudo ATCC 27043]
Length = 410
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 12/231 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+L L + GF A+LVGG VRDLLL PKDFD+ T A +QI++ F +IGRRF +
Sbjct: 1 MLYRLHNAGFDAFLVGGGVRDLLLGEQPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAH 60
Query: 135 VHIKGSVIEVSSFE------TVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTIN 188
+ +IEV++F T + KE +LL YG + D R RDFTIN
Sbjct: 61 IMFGRDIIEVATFRGHHQEPTKNVAAQSKEGMLLRDNVYGTVDEDAER------RDFTIN 114
Query: 189 SLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKD 248
++++ I+DYA GI DL +R + + ED R+LR +R AA+L + +D
Sbjct: 115 AMYYSIADYSIHDYAGGIDDLDDNLIRLIGDPETRYREDPVRMLRAIRFAAKLDMDIDED 174
Query: 249 IDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ L+ + + +R+ E +L G + LLR Y+L + L P
Sbjct: 175 TAAPIKELAHLLRDIPAARLFEESLKLLQSGNGLETYHLLREYDLFQQLFP 225
>gi|115311614|sp|Q8ZRQ8.2|PCNB_SALTY RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein; Flags: Precursor
Length = 465
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 135/289 (46%), Gaps = 23/289 (7%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S Q V + + I+R I + + VL L G++AYLVGG
Sbjct: 8 FCRKVLSREESEAEQAVARPHMTIIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGG 67
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 68 GVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 124
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG E+ +LL +G E D R RDFTINSL++ +
Sbjct: 125 GHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 178
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+L + + + L++ +
Sbjct: 179 DYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMHISPETAEPIPRLATLL 238
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G + LR Y+L + L P Y +
Sbjct: 239 NDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 287
>gi|423198081|ref|ZP_17184664.1| poly(A) polymerase [Aeromonas hydrophila SSU]
gi|404630543|gb|EKB27218.1| poly(A) polymerase [Aeromonas hydrophila SSU]
Length = 499
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 127/249 (51%), Gaps = 14/249 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFD+ T A +QI+ F
Sbjct: 57 ISRKEISENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKSLFSN 116
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFE------TVAKH--GEGKETVLLSQIPYGCDEIDL 174
+IGRRF + + VIEV++F +KH + E +LL YG E D
Sbjct: 117 CRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDA 176
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++ ++D+ G+ DL KL + + ED R+LR
Sbjct: 177 ER------RDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRA 230
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L ++ + L+ ++ + +R+ E + G A ++ LLR Y L
Sbjct: 231 VRFAAKLDMTISPRTAAPIKELAPLLQDIPAARLFEETLKLFLAGDALATYKLLREYGLF 290
Query: 295 KILLPFHAA 303
+ L P AA
Sbjct: 291 QQLFPQVAA 299
>gi|334705809|ref|ZP_08521675.1| poly(A) polymerase [Aeromonas caviae Ae398]
Length = 472
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 14/249 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFD+ T A +QI+ F
Sbjct: 33 ISRKEISENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKALFSN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFE------TVAKH--GEGKETVLLSQIPYGCDEIDL 174
+IGRRF + + VIEV++F +KH + E +LL YG E D
Sbjct: 93 CRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDA 152
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++ ++D+ G+ DL +L + + ED R+LR
Sbjct: 153 ER------RDFTVNALYYSAKDFTLHDFEGGLEDLAARRLELIGDPETRYREDPVRMLRA 206
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L ++ + L+ ++ + +R+ E + G ++ LLR Y L
Sbjct: 207 VRFAAKLDMTISPRTAAPIRELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLF 266
Query: 295 KILLPFHAA 303
+ L P AA
Sbjct: 267 QPLFPQVAA 275
>gi|347818484|ref|ZP_08871918.1| poly(A) polymerase, partial [Verminephrobacter aporrectodeae subsp.
tuberculatae At4]
Length = 397
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 134/262 (51%), Gaps = 23/262 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + V+ LK GF AY+VGG VRDLLL PKDFDV T A +Q++R F
Sbjct: 36 GIDPGLVDPHAAEVVATLKQAGFDAYIVGGAVRDLLLGLRPKDFDVATNATPEQVKRLFR 95
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKETVLLSQIPYGCDEI 172
R+ IIGRRF I VH +G V EV++F A G E +Q+ +
Sbjct: 96 RAFIIGRRFRIVHVVHGRGREHEVTEVATFRAYLDNAAADQVAGNEKTSRAQLSGMQHAV 155
Query: 173 D----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D ++R W ++ RDFT+N++++DP + DY G+ D + LR +
Sbjct: 156 DASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPVGQIVVDYHKGLRDAKKKTLRMIGDPA 215
Query: 222 LSFTEDCARILRGLRIAARLG-LSFCKDIDTAMHSLSSS--IERLDKSRIMMELNYMLSY 278
+ ED RILR +R AA+L L F + TA + S + + +SR+ E+ +L
Sbjct: 216 ARYREDPVRILRAVRFAAKLSPLGFGIEAKTAAPLVQSQALLADVPQSRMFDEMFKLLQT 275
Query: 279 GAAESSICLLRRYNLLKILLPF 300
G A ++I LR+ L + + P
Sbjct: 276 GHAIATIGQLRKLGLARGIYPL 297
>gi|148653930|ref|YP_001281023.1| poly(A) polymerase [Psychrobacter sp. PRwf-1]
gi|148573014|gb|ABQ95073.1| poly(A) polymerase [Psychrobacter sp. PRwf-1]
Length = 719
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 12/246 (4%)
Query: 58 SRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIR 117
++ LG+++A +P V+ L GF AY+VGG VRD LL PKDFD +T A +++
Sbjct: 6 AKQLGLSKADLPNSIIEVIATLNKGGFDAYIVGGGVRDTLLGLSPKDFDAVTDARPHEVK 65
Query: 118 RQF-HRSEIIGRRFPICRVHIKGSVIEVSSFE---TVAKHGEGKETVLLSQIPYGCDEID 173
F R IIGRRF + V+ +IEV++F T H ++ + +G E D
Sbjct: 66 DLFGKRCRIIGRRFQLAHVYSGRDMIEVATFRAPPTGDAHATSDGMIVRDNV-WGDIEQD 124
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDF+IN++++ P ++D+ N + D++ LR L A L ED R+LR
Sbjct: 125 FAR------RDFSINAMYYQPLKGVVHDFCNALDDIKNKTLRLLGHAPLRIEEDPVRLLR 178
Query: 234 GLRIAARLGLSFCKDIDTAMHSLS-SSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
LR A+LG F +++ H + + ++++ R+ E M + G + LL Y
Sbjct: 179 ALRFKAKLGFEFDEELSNQFHDDNWALLDQVSPHRLYDESQKMFTGGYLVPLLPLLFEYG 238
Query: 293 LLKILL 298
++ L+
Sbjct: 239 AIRHLI 244
>gi|392544371|ref|ZP_10291508.1| poly(A) polymerase [Pseudoalteromonas piscicida JCM 20779]
Length = 438
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 150/322 (46%), Gaps = 36/322 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R + VL LK G+ AYLVGGC+RD++L PKDFDV+T A +QI++ F
Sbjct: 15 GISRKQFSPNAIKVLYRLKDGGYDAYLVGGCIRDIMLGIEPKDFDVVTNATPEQIKKLFR 74
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFE-------------TVAKHGEGKETVLLSQIPYG 168
+IGRRF + + +IEV++ ++HG+ LL YG
Sbjct: 75 NCRLIGRRFRLAHIVFGREIIEVATMRGHHQSDDSCATTSQASEHGQ-----LLRDNVYG 129
Query: 169 CDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDC 228
E D R RDFTIN+L++ + D+A G++D++ K+ + + ED
Sbjct: 130 SIEEDAER------RDFTINALYYSINDFTLRDFAGGVADIKARKIELIGDPETRYREDP 183
Query: 229 ARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLL 288
+LR +R A +L + T + +L+ + + +R+ E + G AE + +
Sbjct: 184 VCMLRAIRFATKLDMEIATPTRTPIKALAPLLGHIPAARLFEETLKLFLNGKAEENFLQM 243
Query: 289 RRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR---PA---DYTLW 342
R Y L L P L Q + ++F N D ++ D+ PA LW
Sbjct: 244 REYGLFAQLFPALDKILAQPDNDFERR---FIQQMFANTDSRINADKKVTPAFIYAALLW 300
Query: 343 VGLLSFHQALVSDPQ---DAFV 361
+L+ +AL ++ DAF+
Sbjct: 301 FPILAKSEALAAEGMNEYDAFM 322
>gi|197263544|ref|ZP_03163618.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|205357523|ref|ZP_02571164.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|383495007|ref|YP_005395696.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|197241799|gb|EDY24419.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|205331471|gb|EDZ18235.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|380461828|gb|AFD57231.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
Length = 454
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLNMHISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 258 YHLFQPLFPTITRYFTENG 276
>gi|392308062|ref|ZP_10270596.1| poly(A) polymerase [Pseudoalteromonas citrea NCIMB 1889]
Length = 412
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 141/286 (49%), Gaps = 23/286 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+L LK G+ AYLVGGC+RD+LL PKDFDV+T A +QI++ F +IGRRF +
Sbjct: 1 MLYRLKDGGYDAYLVGGCIRDILLGVEPKDFDVVTNATPEQIKKLFRNCRLIGRRFRLAH 60
Query: 135 VHIKGSVIEVSSF----ETVAKHGEGKETV----LLSQIPYGCDEIDLVRWRNSIHRDFT 186
+ +IEV++ E A + ++ LL YG E D R RDF+
Sbjct: 61 IVFGREIIEVATMRGHHEASASKNQTSQSSEHGQLLRDNVYGSIEEDAER------RDFS 114
Query: 187 INSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFC 246
IN+L++ I+D+ANG++ + K+ + + ED R+LR +R A +L +
Sbjct: 115 INALYYSINDFTIHDFANGMNAIANRKIELIGDPETRYREDPVRMLRAVRFATKLDMEIA 174
Query: 247 KDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLD 306
+ ++ LS + + +R+ E + G AE + LLR + L K L P A ++
Sbjct: 175 QPTKEPIYELSELLSHIPAARLFEETLKLFLNGKAEENYHLLREFGLFKQLFPELDAIIE 234
Query: 307 QQAGKITAENPMMLMRLFFNLDKLVSCDR---PA---DYTLWVGLL 346
T + ++F N DK ++ ++ PA LW LL
Sbjct: 235 SSE---TGFETRFIAQMFANTDKRINAEKKVTPAFVYAALLWFPLL 277
>gi|22124701|ref|NP_668124.1| poly(A) polymerase [Yersinia pestis KIM10+]
gi|108808891|ref|YP_652807.1| poly(A) polymerase I [Yersinia pestis Antiqua]
gi|108810855|ref|YP_646622.1| poly(A) polymerase I [Yersinia pestis Nepal516]
gi|145600216|ref|YP_001164292.1| poly(A) polymerase I [Yersinia pestis Pestoides F]
gi|153948549|ref|YP_001402297.1| poly(A) polymerase I [Yersinia pseudotuberculosis IP 31758]
gi|165936780|ref|ZP_02225347.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. IP275]
gi|170025685|ref|YP_001722190.1| poly(A) polymerase I [Yersinia pseudotuberculosis YPIII]
gi|218930416|ref|YP_002348291.1| poly(A) polymerase [Yersinia pestis CO92]
gi|270489241|ref|ZP_06206315.1| polynucleotide adenylyltransferase [Yersinia pestis KIM D27]
gi|384123570|ref|YP_005506190.1| poly(A) polymerase I [Yersinia pestis D106004]
gi|384138753|ref|YP_005521455.1| poly(A) polymerase I [Yersinia pestis A1122]
gi|421764907|ref|ZP_16201695.1| poly(A) polymerase I [Yersinia pestis INS]
gi|21957515|gb|AAM84375.1|AE013681_5 poly(A) polymerase I [Yersinia pestis KIM10+]
gi|108774503|gb|ABG17022.1| poly(A) polymerase [Yersinia pestis Nepal516]
gi|108780804|gb|ABG14862.1| poly(A) polymerase [Yersinia pestis Antiqua]
gi|145211912|gb|ABP41319.1| poly(A) polymerase [Yersinia pestis Pestoides F]
gi|152960044|gb|ABS47505.1| poly(A) polymerase [Yersinia pseudotuberculosis IP 31758]
gi|165915429|gb|EDR34039.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. IP275]
gi|169752219|gb|ACA69737.1| poly(A) polymerase [Yersinia pseudotuberculosis YPIII]
gi|262363166|gb|ACY59887.1| poly(A) polymerase I [Yersinia pestis D106004]
gi|270337745|gb|EFA48522.1| polynucleotide adenylyltransferase [Yersinia pestis KIM D27]
gi|342853882|gb|AEL72435.1| poly(A) polymerase I [Yersinia pestis A1122]
gi|411174458|gb|EKS44491.1| poly(A) polymerase I [Yersinia pestis INS]
Length = 491
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 34/323 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L G++AYLVGG VRDLLL R PKDFD+ T+A +Q+R+ F
Sbjct: 62 ISRRDISDNALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRN 121
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F + + +++ +LL +G E
Sbjct: 122 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIE 181
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 182 DDAQR------RDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRM 235
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L +S + + L+S + + +R+ E +L G + L Y
Sbjct: 236 LRAVRFAAKLDMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 295
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLWV 343
L + L P A +Q ++PM +L+++ N D + D+ PA LW
Sbjct: 296 QLFQPLFPLIARNFTEQ-----HDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWY 350
Query: 344 GLLSFHQALVSDP----QDAFVV 362
L+ Q L + DAF +
Sbjct: 351 PLIEHAQKLTQESGLAYYDAFAL 373
>gi|197249173|ref|YP_002145185.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|200386557|ref|ZP_03213169.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|417363428|ref|ZP_12136641.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|197212876|gb|ACH50273.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|199603655|gb|EDZ02200.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|353600340|gb|EHC56275.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
Length = 454
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 258 YHLFQPLFPTITRYFTENG 276
>gi|410617323|ref|ZP_11328294.1| poly(A) polymerase [Glaciecola polaris LMG 21857]
gi|410163160|dbj|GAC32432.1| poly(A) polymerase [Glaciecola polaris LMG 21857]
Length = 426
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 140/282 (49%), Gaps = 20/282 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R+ I + VL L + GFQAYLVGGCVRD+LL + PKDFDV T A +Q++ F
Sbjct: 1 MSRSDISDNALKVLYRLHNNGFQAYLVGGCVRDILLGKEPKDFDVTTDATPEQVKELFRN 60
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF-------ETVAKHGEGKET---VLLSQIPYGCDEI 172
+IGRRF + V +IEV++F + AK K++ LL +G E
Sbjct: 61 CRLIGRRFRLAHVVFGREIIEVATFRGHHPNQDEEAKDNLSKQSDHGQLLRDNVFGSIEE 120
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFT+N+++++ I+D+A G+ + ++ + + ED R+L
Sbjct: 121 DAER------RDFTVNAMYYNIADFSIHDFAKGMQAIEKREISMIGDPATRYREDPVRML 174
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +LG+ D M+ L+ + + +R+ E+ +L G + LL +N
Sbjct: 175 RAVRFAVKLGMKISPDTANPMYELAPLMANIPSARLFEEVLKLLLSGQGLETYKLLNEFN 234
Query: 293 LLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD 334
L + L P L Q + A +LM N D ++ D
Sbjct: 235 LFEQLFPQLGPLLKTQNSRELAFIEQVLM----NTDNRINSD 272
>gi|375117617|ref|ZP_09762784.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|326621884|gb|EGE28229.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
Length = 454
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 258 YHLFQPLFPTITRYFTENG 276
>gi|387890495|ref|YP_006320793.1| poly(A) polymerase [Escherichia blattae DSM 4481]
gi|386925328|gb|AFJ48282.1| poly(A) polymerase [Escherichia blattae DSM 4481]
Length = 453
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 126/256 (49%), Gaps = 17/256 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 28 ISRKDISENALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRN 87
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F H E G+ +LL +G E D
Sbjct: 88 CRLVGRRFRLAHVMFGPEIIEVATFR--GHHEEQADRQQSQRGQNGMLLRDNIFGSIEED 145
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G++DLR +R + + ED R+LR
Sbjct: 146 AQR------RDFTINSLYYSVADFTVRDYVGGLNDLRAGIIRLIGTPETRYREDPVRMLR 199
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+L ++ + LS+ + + +R+ E +L G ++ LL Y L
Sbjct: 200 AVRFAAKLNMTIEPATGEPIPRLSTLLNDVPAARLYEESLKLLQSGYGYNTYRLLCEYQL 259
Query: 294 LKILLPFHAAYLDQQA 309
+ L P Y +
Sbjct: 260 FQPLFPTITRYFTENG 275
>gi|153997558|ref|ZP_02022658.1| poly(A) polymerase [Yersinia pestis CA88-4125]
gi|149289195|gb|EDM39275.1| poly(A) polymerase [Yersinia pestis CA88-4125]
Length = 502
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 34/323 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L G++AYLVGG VRDLLL R PKDFD+ T+A +Q+R+ F
Sbjct: 73 ISRRDISDNALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRN 132
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F + + +++ +LL +G E
Sbjct: 133 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIE 192
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 193 DDAQR------RDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRM 246
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L +S + + L+S + + +R+ E +L G + L Y
Sbjct: 247 LRAVRFAAKLDMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 306
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLWV 343
L + L P A +Q ++PM +L+++ N D + D+ PA LW
Sbjct: 307 QLFQPLFPLIARNFTEQ-----HDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWY 361
Query: 344 GLLSFHQALVSDP----QDAFVV 362
L+ Q L + DAF +
Sbjct: 362 PLIEHAQKLTQESGLAYYDAFAL 384
>gi|332298021|ref|YP_004439943.1| poly(A) polymerase [Treponema brennaborense DSM 12168]
gi|332181124|gb|AEE16812.1| poly(A) polymerase [Treponema brennaborense DSM 12168]
Length = 426
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 122/243 (50%), Gaps = 14/243 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I R I + V+ +L+ GF AY+VGG VRDLL+ + PKDFD++T A +I++ F
Sbjct: 27 IPREKIDADALRVISMLREYGFDAYVVGGAVRDLLVDKDPKDFDIVTDAPPPRIKKIFRN 86
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIH 182
S IIGRRF + V + EVS+F ++ G +G + D+ R
Sbjct: 87 SRIIGRRFRLVHVFFGPKIFEVSTFRSITDGSVGNS--------FGSMDEDVQR------ 132
Query: 183 RDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLG 242
RDFT+N+L++DP +I DY G+ D+R +R +IP F ED R+LR ++ AA G
Sbjct: 133 RDFTLNALYYDPVREQIVDYVGGVKDIRKGVIRPVIPIERIFEEDPVRMLRAVKYAATTG 192
Query: 243 LSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHA 302
+ + + + + SR+ EL +++ G A + +L L P
Sbjct: 193 CKLPGYLKRKIRKSAHLLSPVSPSRLTEELMKIINSGHAYDIVKFSLEVDLYMYLQPAAT 252
Query: 303 AYL 305
A +
Sbjct: 253 AMM 255
>gi|161525796|ref|YP_001580808.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616]
gi|189349483|ref|YP_001945111.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616]
gi|160343225|gb|ABX16311.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616]
gi|189333505|dbj|BAG42575.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616]
Length = 512
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 130/246 (52%), Gaps = 17/246 (6%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A+I + + V L+ G++A++VGG VRDLLL PKDFDV T A +++R F
Sbjct: 62 GIDPALISKNAVRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFR 121
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETV------AKHGEGKETVLLSQIPYGCDEID-- 173
R+ +IGRRF I V +IEVS+F + A E + + ++ +D
Sbjct: 122 RARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPEAATAEPPKRLKRDELDRRTHAVDAS 181
Query: 174 --LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSF 224
++R W ++ RDFTIN++++DP + DY +G++D+R LR + +
Sbjct: 182 GRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPATRY 241
Query: 225 TEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESS 284
ED R+LR +R AA+LG +++L+ I + +R+ E+ +L G A +
Sbjct: 242 REDPVRMLRVVRFAAKLGFEIEPHTREPINALADLINNVPAARLFDEMLKLLLSGHALAC 301
Query: 285 ICLLRR 290
+ LR+
Sbjct: 302 LQRLRK 307
>gi|16763574|ref|NP_459189.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|378443637|ref|YP_005231269.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378448490|ref|YP_005235849.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378698163|ref|YP_005180120.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378987589|ref|YP_005250753.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379699405|ref|YP_005241133.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|419731648|ref|ZP_14258558.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419736047|ref|ZP_14262909.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419738165|ref|ZP_14264932.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|419743698|ref|ZP_14270362.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419747003|ref|ZP_14273567.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|421571359|ref|ZP_16017037.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421575733|ref|ZP_16021342.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421578347|ref|ZP_16023925.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421583672|ref|ZP_16029188.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|422024305|ref|ZP_16370796.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422029322|ref|ZP_16375592.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427544768|ref|ZP_18926100.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427560634|ref|ZP_18930864.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427579961|ref|ZP_18935651.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427601523|ref|ZP_18940466.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427626154|ref|ZP_18945373.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427649237|ref|ZP_18950130.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427659521|ref|ZP_18955081.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427664635|ref|ZP_18959828.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|427690923|ref|ZP_18964702.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|448967573|ref|YP_002044169.2| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|16418686|gb|AAL19148.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|261245416|emb|CBG23206.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267991868|gb|ACY86753.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301156811|emb|CBW16287.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|323128504|gb|ADX15934.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|332987136|gb|AEF06119.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|381291206|gb|EIC32456.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381292793|gb|EIC33967.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381303647|gb|EIC44674.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|381311535|gb|EIC52350.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|381320519|gb|EIC61121.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|402520780|gb|EJW28120.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402520912|gb|EJW28251.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402524498|gb|EJW31796.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402531573|gb|EJW38778.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|414024197|gb|EKT07591.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414024375|gb|EKT07754.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414026174|gb|EKT09453.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414038174|gb|EKT20895.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414039066|gb|EKT21758.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414043455|gb|EKT25960.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414052617|gb|EKT34651.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414053980|gb|EKT35944.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414058286|gb|EKT39968.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414062220|gb|EKT43558.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|414067754|gb|EKT48038.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
Length = 472
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 135/289 (46%), Gaps = 23/289 (7%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S Q V + + I+R I + + VL L G++AYLVGG
Sbjct: 15 FCRKVLSREESEAEQAVARPHMTIIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGG 74
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 75 GVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 131
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG E+ +LL +G E D R RDFTINSL++ +
Sbjct: 132 GHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 185
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+L + + + L++ +
Sbjct: 186 DYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMHISPETAEPIPRLATLL 245
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G + LR Y+L + L P Y +
Sbjct: 246 NDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 294
>gi|378977029|ref|YP_005225170.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|386033203|ref|YP_005953116.1| poly(A) polymerase I [Klebsiella pneumoniae KCTC 2242]
gi|402782377|ref|YP_006637923.1| poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|419975582|ref|ZP_14490991.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419981370|ref|ZP_14496646.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419986615|ref|ZP_14501745.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|419992292|ref|ZP_14507249.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419998672|ref|ZP_14513457.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420004560|ref|ZP_14519196.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420010249|ref|ZP_14524724.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420016438|ref|ZP_14530730.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420021767|ref|ZP_14535943.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|420027287|ref|ZP_14541281.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420033209|ref|ZP_14547016.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420038667|ref|ZP_14552311.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|420044797|ref|ZP_14558273.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420050781|ref|ZP_14564077.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420056068|ref|ZP_14569229.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420060937|ref|ZP_14573931.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420067647|ref|ZP_14580437.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420072865|ref|ZP_14585498.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420078796|ref|ZP_14591250.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420083553|ref|ZP_14595832.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|421910028|ref|ZP_16339823.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421919373|ref|ZP_16348876.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|424935039|ref|ZP_18353411.1| Poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|428151155|ref|ZP_18998900.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428933667|ref|ZP_19007213.1| poly(A) polymerase I [Klebsiella pneumoniae JHCK1]
gi|428941880|ref|ZP_19014906.1| poly(A) polymerase I [Klebsiella pneumoniae VA360]
gi|449059795|ref|ZP_21737477.1| poly(A) polymerase I [Klebsiella pneumoniae hvKP1]
gi|339760331|gb|AEJ96551.1| poly(A) polymerase I [Klebsiella pneumoniae KCTC 2242]
gi|364516440|gb|AEW59568.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397342803|gb|EJJ35959.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397343204|gb|EJJ36353.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397347299|gb|EJJ40407.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397359913|gb|EJJ52600.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397361217|gb|EJJ53882.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397365555|gb|EJJ58178.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397375019|gb|EJJ67327.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397379014|gb|EJJ71214.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397386352|gb|EJJ78435.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397393585|gb|EJJ85338.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397395549|gb|EJJ87254.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397403958|gb|EJJ95490.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|397410618|gb|EJK01895.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397411014|gb|EJK02279.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397421084|gb|EJK12120.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397427694|gb|EJK18456.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397432038|gb|EJK22703.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397438534|gb|EJK29026.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397444504|gb|EJK34779.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397451072|gb|EJK41163.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|402543238|gb|AFQ67387.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|407809226|gb|EKF80477.1| Poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|410116158|emb|CCM82448.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410118404|emb|CCM91501.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|426299687|gb|EKV62010.1| poly(A) polymerase I [Klebsiella pneumoniae VA360]
gi|426304689|gb|EKV66827.1| poly(A) polymerase I [Klebsiella pneumoniae JHCK1]
gi|427538974|emb|CCM95038.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|448874516|gb|EMB09561.1| poly(A) polymerase I [Klebsiella pneumoniae hvKP1]
Length = 436
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 129/259 (49%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 10 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG T +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTTDRVTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L ++ + + L++ + + +R+ E+ +L G + LLR
Sbjct: 181 MLRAVRFAAKLNMTISPETAEPLPRLAALLHDVPPARLFEEVLKLLQAGYGYQTYMLLRE 240
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y ++
Sbjct: 241 YSLFQPLFPTITRYFTERG 259
>gi|445147775|ref|ZP_21388378.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|445155705|ref|ZP_21392425.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|444844032|gb|ELX69278.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|444848573|gb|ELX73696.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
Length = 472
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 135/289 (46%), Gaps = 23/289 (7%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S Q V + + I+R I + + VL L G++AYLVGG
Sbjct: 15 FCRKVLSREESEAEQAVARPHMTIIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGG 74
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 75 GVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 131
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG E+ +LL +G E D R RDFTINSL++ +
Sbjct: 132 GHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 185
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+L + + + L++ +
Sbjct: 186 DYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLL 245
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G + LR Y+L + L P Y +
Sbjct: 246 NDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 294
>gi|425078335|ref|ZP_18481438.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425088967|ref|ZP_18492060.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405590196|gb|EKB63730.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405600105|gb|EKB73272.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
Length = 453
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 129/259 (49%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG T +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTTDRVTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L ++ + + L++ + + +R+ E+ +L G + LLR
Sbjct: 198 MLRAVRFAAKLNMTISPETAEPLPRLAALLHDVPPARLFEEVLKLLQAGYGYQTYMLLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y ++
Sbjct: 258 YSLFQPLFPTITRYFTERG 276
>gi|421079754|ref|ZP_15540691.1| Poly(A) polymerase family protein [Pectobacterium wasabiae CFBP
3304]
gi|401705521|gb|EJS95707.1| Poly(A) polymerase family protein [Pectobacterium wasabiae CFBP
3304]
Length = 452
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 151/315 (47%), Gaps = 26/315 (8%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+ I + VL L G++AYLVGG VRDLLL + PKDFD+ T A Q+R+ F
Sbjct: 21 ISRSDISDNALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA-KHGEGKET----------VLLSQIPYGCDE 171
++GRRF + + VIEV++F +H E +E +LL +G E
Sbjct: 81 CRLVGRRFRLAHIMFGPEVIEVATFRGHHDQHQEQQEVKNSSQQAQSGMLLRDNIFGSVE 140
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF+INSL++ + DY NG++DLR +R + + ED R+
Sbjct: 141 EDAQR------RDFSINSLYYSIADFSVRDYTNGLNDLRQGVIRMIGDPETRYREDPVRM 194
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L ++ + + L+S + + +R+ E +L G + +L Y
Sbjct: 195 LRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGYGYPTYKMLCEY 254
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD---RPA---DYTLWVGL 345
L + L P + + G T E M+ ++ N D+ + D PA LW L
Sbjct: 255 QLFQPLFPLLSRHFTPN-GDSTLER--MVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPL 311
Query: 346 LSFHQALVSDPQDAF 360
+ Q L + A+
Sbjct: 312 IEHAQKLAQESGLAY 326
>gi|16759183|ref|NP_454800.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29140733|ref|NP_804075.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|213650761|ref|ZP_03380814.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
gi|25513273|pir||AI0525 poly(A) polymerase [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16501473|emb|CAD01345.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29136357|gb|AAO67924.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
Length = 472
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 135/289 (46%), Gaps = 23/289 (7%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S Q V + + I+R I + + VL L G++AYLVGG
Sbjct: 15 FCRKVLSREESEAEQAVARPHMTIIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGG 74
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 75 GVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 131
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG E+ +LL +G E D R RDFTINSL++ +
Sbjct: 132 GHNEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 185
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+L + + + L++ +
Sbjct: 186 DYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLL 245
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G + LR Y+L + L P Y +
Sbjct: 246 NDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 294
>gi|385870653|gb|AFI89173.1| Poly(A) polymerase [Pectobacterium sp. SCC3193]
Length = 452
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 151/315 (47%), Gaps = 26/315 (8%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+ I + VL L G++AYLVGG VRDLLL + PKDFD+ T A Q+R+ F
Sbjct: 21 ISRSDISDNALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA-KHGEGKET----------VLLSQIPYGCDE 171
++GRRF + + VIEV++F +H E +E +LL +G E
Sbjct: 81 CRLVGRRFRLAHIMFGPEVIEVATFRGHHDQHQEQQEVKNSSQQAQSGMLLRDNIFGSVE 140
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF+INSL++ + DY NG++DLR +R + + ED R+
Sbjct: 141 EDAQR------RDFSINSLYYSISDFSVRDYTNGLNDLRQGVIRMIGDPETRYREDPVRM 194
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L ++ + + L+S + + +R+ E +L G + +L Y
Sbjct: 195 LRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGYGYPTYKMLCEY 254
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD---RPA---DYTLWVGL 345
L + L P + + G T E M+ ++ N D+ + D PA LW L
Sbjct: 255 QLFQPLFPLLSRHFTPN-GDSTLER--MVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPL 311
Query: 346 LSFHQALVSDPQDAF 360
+ Q L + A+
Sbjct: 312 IEHAQKLAQESGLAY 326
>gi|205359247|ref|ZP_02668314.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|374982283|ref|ZP_09723604.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|378982726|ref|YP_005245881.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|386590077|ref|YP_006086477.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|194405879|gb|ACF66098.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|205337551|gb|EDZ24315.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|312911154|dbj|BAJ35128.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321222237|gb|EFX47309.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|383797121|gb|AFH44203.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
Length = 437
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 10 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 181 MLRAVRFAAKLNMHISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLRE 240
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 241 YHLFQPLFPTITRYFTENG 259
>gi|213052337|ref|ZP_03345215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
gi|213425919|ref|ZP_03358669.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
gi|289826507|ref|ZP_06545600.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
Length = 437
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 10 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHNEGSESDRTTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 181 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLRE 240
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 241 YHLFQPLFPTITRYFTENG 259
>gi|221200986|ref|ZP_03574026.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD2M]
gi|221206562|ref|ZP_03579575.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD2]
gi|421473796|ref|ZP_15921879.1| poly(A) polymerase [Burkholderia multivorans ATCC BAA-247]
gi|221173871|gb|EEE06305.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD2]
gi|221178836|gb|EEE11243.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD2M]
gi|400220196|gb|EJO50750.1| poly(A) polymerase [Burkholderia multivorans ATCC BAA-247]
Length = 512
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 23/249 (9%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A+I + + V L+ G++A++VGG VRDLLL PKDFDV T A +++R F
Sbjct: 62 GIDPALISKNAVRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFR 121
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGC--DEID------ 173
R+ +IGRRF I V +IEVS+F + + ++ P DE+D
Sbjct: 122 RARLIGRRFQIVHVQFGQELIEVSTFRALV---DAPPEAATAEPPRRLKRDELDRRTHAV 178
Query: 174 -----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
++R W ++ RDFTIN++++DP + DY +G++D+R LR +
Sbjct: 179 DASGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPA 238
Query: 222 LSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAA 281
+ ED R+LR +R AA+LG +++L+ I + +R+ E+ +L G A
Sbjct: 239 TRYREDPVRMLRVVRFAAKLGFEIEPHTREPINALADLINNVPAARLFDEMLKLLLSGHA 298
Query: 282 ESSICLLRR 290
+ + LR+
Sbjct: 299 LACLQRLRK 307
>gi|221214419|ref|ZP_03587390.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD1]
gi|221165676|gb|EED98151.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD1]
Length = 512
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 23/249 (9%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A+I + + V L+ G++A++VGG VRDLLL PKDFDV T A +++R F
Sbjct: 62 GIDPALISKNAVRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFR 121
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGC--DEID------ 173
R+ +IGRRF I V +IEVS+F + + ++ P DE+D
Sbjct: 122 RARLIGRRFQIVHVQFGQELIEVSTFRALV---DAPPEAATAEPPRRLKRDELDRRTHAV 178
Query: 174 -----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
++R W ++ RDFTIN++++DP + DY +G++D+R LR +
Sbjct: 179 DASGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPA 238
Query: 222 LSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAA 281
+ ED R+LR +R AA+LG +++L+ I + +R+ E+ +L G A
Sbjct: 239 TRYREDPVRMLRVVRFAAKLGFEIEPHTREPINALADLINNVPAARLFDEMLKLLLSGHA 298
Query: 282 ESSICLLRR 290
+ + LR+
Sbjct: 299 LACLQRLRK 307
>gi|62178754|ref|YP_215171.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|205351523|ref|YP_002225324.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207855700|ref|YP_002242351.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224582031|ref|YP_002635829.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|375113062|ref|ZP_09758232.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|375122299|ref|ZP_09767463.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|418816333|ref|ZP_13371825.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|418820947|ref|ZP_13376378.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|418855142|ref|ZP_13409802.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|421356680|ref|ZP_15807000.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421363116|ref|ZP_15813359.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421366178|ref|ZP_15816383.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421371096|ref|ZP_15821256.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421374796|ref|ZP_15824917.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421381906|ref|ZP_15831959.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421386257|ref|ZP_15836271.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421390992|ref|ZP_15840965.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421394426|ref|ZP_15844366.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421399218|ref|ZP_15849114.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421403510|ref|ZP_15853355.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421406745|ref|ZP_15856557.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421413791|ref|ZP_15863541.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421417208|ref|ZP_15866919.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421422962|ref|ZP_15872626.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421426174|ref|ZP_15875803.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421431626|ref|ZP_15881208.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421433619|ref|ZP_15883177.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421439754|ref|ZP_15889235.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421442976|ref|ZP_15892419.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421448907|ref|ZP_15898292.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|436718245|ref|ZP_20518928.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|436795869|ref|ZP_20522587.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436806688|ref|ZP_20526843.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436812885|ref|ZP_20531217.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436831050|ref|ZP_20535760.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436852340|ref|ZP_20542661.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436855632|ref|ZP_20544790.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436866131|ref|ZP_20551907.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436870802|ref|ZP_20554437.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436877085|ref|ZP_20558252.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436887386|ref|ZP_20563723.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436895252|ref|ZP_20568315.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436902207|ref|ZP_20573036.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436909095|ref|ZP_20575983.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436916886|ref|ZP_20580545.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436924140|ref|ZP_20585288.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436933511|ref|ZP_20589718.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436940224|ref|ZP_20594232.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436952666|ref|ZP_20601238.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436958812|ref|ZP_20603347.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436972265|ref|ZP_20610267.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436978632|ref|ZP_20612635.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436993182|ref|ZP_20618169.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437003397|ref|ZP_20621577.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437021366|ref|ZP_20627827.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437036749|ref|ZP_20634028.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437040023|ref|ZP_20634468.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437048594|ref|ZP_20639608.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437060044|ref|ZP_20646207.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437064448|ref|ZP_20648469.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437073068|ref|ZP_20652878.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437080801|ref|ZP_20657341.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437093688|ref|ZP_20664005.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437109140|ref|ZP_20667681.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437120722|ref|ZP_20671496.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437130396|ref|ZP_20676565.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437138468|ref|ZP_20680992.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437143064|ref|ZP_20684076.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437152919|ref|ZP_20690171.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437159494|ref|ZP_20693986.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437171192|ref|ZP_20700487.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437175063|ref|ZP_20702564.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437186929|ref|ZP_20709816.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437189794|ref|ZP_20710670.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|437260580|ref|ZP_20717701.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437265603|ref|ZP_20720481.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437280979|ref|ZP_20728260.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437286867|ref|ZP_20730369.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437317073|ref|ZP_20738011.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437322716|ref|ZP_20738933.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437341207|ref|ZP_20744649.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437351770|ref|ZP_20747601.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|437421143|ref|ZP_20754804.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437451775|ref|ZP_20759462.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437459165|ref|ZP_20761017.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437474073|ref|ZP_20766092.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437490116|ref|ZP_20770896.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437509791|ref|ZP_20776772.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437544378|ref|ZP_20782884.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437554056|ref|ZP_20784273.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437576486|ref|ZP_20790655.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437596791|ref|ZP_20796406.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437604254|ref|ZP_20798884.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437615806|ref|ZP_20802384.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437649684|ref|ZP_20809515.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437659351|ref|ZP_20812178.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437674303|ref|ZP_20816456.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|437689159|ref|ZP_20819969.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437717326|ref|ZP_20828313.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437728677|ref|ZP_20830557.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437780666|ref|ZP_20836462.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437800581|ref|ZP_20837957.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|437909943|ref|ZP_20850165.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|438012100|ref|ZP_20854532.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|438085682|ref|ZP_20858790.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438098913|ref|ZP_20863035.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|438108219|ref|ZP_20866974.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|438144658|ref|ZP_20875651.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|440764693|ref|ZP_20943718.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SH11G1113]
gi|440766256|ref|ZP_20945251.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|440773152|ref|ZP_20952052.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|445129669|ref|ZP_21380929.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|445176256|ref|ZP_21397574.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445195180|ref|ZP_21400394.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445235830|ref|ZP_21406971.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445245406|ref|ZP_21408193.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445328854|ref|ZP_21413250.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445352720|ref|ZP_21420727.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445360293|ref|ZP_21423443.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|448967495|ref|YP_002039420.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|62126387|gb|AAX64090.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|205271304|emb|CAR36095.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|206707503|emb|CAR31777.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224466558|gb|ACN44388.1| polyA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322713208|gb|EFZ04779.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|326626549|gb|EGE32892.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|392789694|gb|EJA46196.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|392791685|gb|EJA48154.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|392822029|gb|EJA77843.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|395988364|gb|EJH97521.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395991006|gb|EJI00132.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395993599|gb|EJI02693.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|395999647|gb|EJI08664.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396004867|gb|EJI13848.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|396007053|gb|EJI16012.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396012995|gb|EJI21885.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396013163|gb|EJI22051.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396014876|gb|EJI23760.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396028297|gb|EJI37058.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396028564|gb|EJI37324.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396032914|gb|EJI41630.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396038220|gb|EJI46860.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396038638|gb|EJI47273.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396043093|gb|EJI51707.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396052485|gb|EJI60992.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396055270|gb|EJI63761.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396061546|gb|EJI69968.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396069000|gb|EJI77344.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|396071138|gb|EJI79464.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|396071710|gb|EJI80033.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|434939079|gb|ELL45957.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|434961893|gb|ELL55133.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434969213|gb|ELL61927.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434975875|gb|ELL68149.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434982680|gb|ELL74490.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434985021|gb|ELL76721.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434985099|gb|ELL76796.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|434992386|gb|ELL83843.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434994452|gb|ELL85802.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435001576|gb|ELL92668.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435009123|gb|ELL99919.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435010447|gb|ELM01212.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435017368|gb|ELM07875.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435019994|gb|ELM10422.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435029935|gb|ELM19984.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435032668|gb|ELM22599.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435041019|gb|ELM30771.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435042295|gb|ELM32015.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435046198|gb|ELM35815.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435049371|gb|ELM38898.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435055648|gb|ELM45059.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435055847|gb|ELM45257.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435066226|gb|ELM55316.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435069538|gb|ELM58538.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435073054|gb|ELM61943.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435073420|gb|ELM62293.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435078311|gb|ELM67043.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435087649|gb|ELM76136.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435091941|gb|ELM80314.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435098447|gb|ELM86688.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435100933|gb|ELM89088.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435109122|gb|ELM97077.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435111423|gb|ELM99327.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435112131|gb|ELN00008.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435119335|gb|ELN06956.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435125551|gb|ELN12992.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435126406|gb|ELN13801.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435132920|gb|ELN20103.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435141583|gb|ELN28524.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435141941|gb|ELN28871.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435146836|gb|ELN33618.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435149559|gb|ELN36254.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435157303|gb|ELN43764.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435157804|gb|ELN44238.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435163984|gb|ELN50097.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435169628|gb|ELN55398.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435177372|gb|ELN62697.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435179529|gb|ELN64677.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435184166|gb|ELN69111.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435194093|gb|ELN78553.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435195463|gb|ELN79855.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435200799|gb|ELN84765.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435208616|gb|ELN92022.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435213241|gb|ELN96152.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435222414|gb|ELO04522.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435224560|gb|ELO06521.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435230950|gb|ELO12215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435232088|gb|ELO13215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435232951|gb|ELO14021.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|435234190|gb|ELO15069.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435243834|gb|ELO24090.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435244237|gb|ELO24468.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435249354|gb|ELO29179.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435257752|gb|ELO37032.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435262182|gb|ELO41311.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435268438|gb|ELO47019.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435269891|gb|ELO48401.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435278687|gb|ELO56517.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435282251|gb|ELO59873.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435284344|gb|ELO61840.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435290366|gb|ELO67294.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435301497|gb|ELO77522.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435304322|gb|ELO80104.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435318046|gb|ELO91032.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|435318886|gb|ELO91774.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435326068|gb|ELO97902.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435333338|gb|ELP04165.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|435334611|gb|ELP05111.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|436415696|gb|ELP13613.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SH11G1113]
gi|436416961|gb|ELP14860.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|436423082|gb|ELP20900.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|444852979|gb|ELX78052.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|444857141|gb|ELX82156.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444859760|gb|ELX84700.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444865755|gb|ELX90519.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444873529|gb|ELX97822.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444879551|gb|ELY03649.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444885147|gb|ELY08949.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|444890429|gb|ELY13763.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
Length = 472
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 135/289 (46%), Gaps = 23/289 (7%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S Q V + + I+R I + + VL L G++AYLVGG
Sbjct: 15 FCRKVLSREESEAEQAVARPHMTIIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGG 74
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 75 GVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 131
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG E+ +LL +G E D R RDFTINSL++ +
Sbjct: 132 GHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 185
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+L + + + L++ +
Sbjct: 186 DYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLL 245
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G + LR Y+L + L P Y +
Sbjct: 246 NDIPPARLFEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 294
>gi|85058468|ref|YP_454170.1| poly(A) polymerase I [Sodalis glossinidius str. 'morsitans']
gi|84778988|dbj|BAE73765.1| poly(A) polymerase I [Sodalis glossinidius str. 'morsitans']
Length = 470
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 147/310 (47%), Gaps = 26/310 (8%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G+ AYLVGG VRDLLL + PKDFD+ T+A +Q+R+ F
Sbjct: 45 ISRKEISENALKVLYRLNKAGYVAYLVGGGVRDLLLGKKPKDFDITTSATPEQMRKLFRN 104
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFE-----------TVAKHGEGKETVLLSQIPYGCDE 171
++GRRF + V +IEV++F G+ +LL +G E
Sbjct: 105 CRLVGRRFRLAHVMFGPEIIEVATFRGHHQVLEPEEGATGAALTGQNGMLLRDNIFGSIE 164
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF++NSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 165 EDAQR------RDFSVNSLYYSVADFTLRDYTGGLKDLQEGTIRLIGDPETRYREDPVRM 218
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L ++ ++ + L++ + + +R+ E +L G E++ LL Y
Sbjct: 219 LRAVRFAAKLDMTISRETAEPIPRLAALLHDIPPARLFEEALKLLQAGYGEATYHLLCEY 278
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD---RPA---DYTLWVGL 345
L + L P + + + M++R+ N D+ + D PA LW L
Sbjct: 279 QLFQPLFPLISRNFTEHGDSYMEQ---MVIRVLANTDQRLRSDMRVNPAFLFAAMLWYPL 335
Query: 346 LSFHQALVSD 355
L Q L +
Sbjct: 336 LEHAQKLTQE 345
>gi|418358238|ref|ZP_12960917.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|356688536|gb|EHI53095.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 494
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 125/249 (50%), Gaps = 14/249 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G+ AYLVGG VRD+LL R PKDFD+ T A +QI+ F
Sbjct: 49 ISRKEISENALKVLYRLNKGGYDAYLVGGGVRDILLGRTPKDFDIATNATPEQIKALFSN 108
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFE------TVAKH--GEGKETVLLSQIPYGCDEIDL 174
+IGRRF + + VIEV++F +KH + E +LL YG E D
Sbjct: 109 CRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDA 168
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++ ++D+ GI DL KL + + ED R+LR
Sbjct: 169 ER------RDFTVNALYYSARDFTLHDFEGGIEDLAQRKLELIGDPETRYREDPVRMLRA 222
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L ++ + L+ ++ + +R+ E + G ++ L+R Y L
Sbjct: 223 MRFAAKLDMTISPRSAAPIKELAPLLQDIPPARLFEETLKLFLAGDGLATYKLMREYGLF 282
Query: 295 KILLPFHAA 303
+ L P AA
Sbjct: 283 QPLFPQVAA 291
>gi|419761859|ref|ZP_14288110.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
gi|397745400|gb|EJK92607.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
Length = 433
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 129/259 (49%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG T +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTTDRVTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L ++ + + L++ + + +R+ E+ +L G + LLR
Sbjct: 198 MLRAVRFAAKLNMTISPETAEPLPRLAALLHDVPPARLFEEVLKLLQAGYGYQTYMLLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y ++
Sbjct: 258 YSLFQPLFPTITRYFTERG 276
>gi|152968724|ref|YP_001333833.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238893122|ref|YP_002917856.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|424829004|ref|ZP_18253732.1| poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|425079908|ref|ZP_18483005.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|425090026|ref|ZP_18493111.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|150953573|gb|ABR75603.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238545438|dbj|BAH61789.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|405606833|gb|EKB79803.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405614590|gb|EKB87289.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|414706421|emb|CCN28125.1| poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
Length = 453
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 129/259 (49%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG T +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGHTTDRVTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L ++ + + L++ + + +R+ E+ +L G + LLR
Sbjct: 198 MLRAVRFAAKLNMTISPETAEPLPRLAALLHDVPPARLFEEVLKLLQAGYGYQTYMLLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y ++
Sbjct: 258 YSLFQPLFPTITRYFTERG 276
>gi|145297842|ref|YP_001140683.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida A449]
gi|142850614|gb|ABO88935.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida A449]
Length = 468
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 125/249 (50%), Gaps = 14/249 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G+ AYLVGG VRD+LL R PKDFD+ T A +QI+ F
Sbjct: 23 ISRKEISENALKVLYRLNKGGYDAYLVGGGVRDILLGRTPKDFDIATNATPEQIKALFSN 82
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFE------TVAKH--GEGKETVLLSQIPYGCDEIDL 174
+IGRRF + + VIEV++F +KH + E +LL YG E D
Sbjct: 83 CRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDA 142
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++ ++D+ GI DL KL + + ED R+LR
Sbjct: 143 ER------RDFTVNALYYSARDFTLHDFEGGIEDLAQRKLELIGDPETRYREDPVRMLRA 196
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L ++ + L+ ++ + +R+ E + G ++ L+R Y L
Sbjct: 197 MRFAAKLDMTISPRSAAPIKELAPLLQDIPPARLFEETLKLFLAGDGLATYKLMREYGLF 256
Query: 295 KILLPFHAA 303
+ L P AA
Sbjct: 257 QPLFPQVAA 265
>gi|339998207|ref|YP_004729090.1| poly(A) polymerase [Salmonella bongori NCTC 12419]
gi|339511568|emb|CCC29277.1| poly(A) polymerase [Salmonella bongori NCTC 12419]
Length = 472
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 135/289 (46%), Gaps = 23/289 (7%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S Q V + + I+R I + + V+ L G++A+LVGG
Sbjct: 15 FCRKVLSREESEAEQAVARPHMTIIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGG 74
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 75 GVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 131
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG E+ +LL +G E D R RDFTINSL++ +
Sbjct: 132 GHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 185
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+L + + + L++ +
Sbjct: 186 DYVGGMQDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLL 245
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G + LR YNL + L P Y +
Sbjct: 246 NDIPPARLFEESLKLLQAGYGYETYKKLREYNLFQPLFPTITRYFTENG 294
>gi|153819896|ref|ZP_01972563.1| polyA polymerase [Vibrio cholerae NCTC 8457]
gi|126509566|gb|EAZ72160.1| polyA polymerase [Vibrio cholerae NCTC 8457]
Length = 457
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 124/247 (50%), Gaps = 18/247 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F
Sbjct: 29 ISRQQISENALKVLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRN 88
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET----------VLLSQIPYGCDEI 172
+IGRRF + + ++EV++F H E ++ +LL YG +
Sbjct: 89 CRLIGRRFRLAHIMFGRDIVEVATFR--GHHQESSQSQNIAAQSEAGMLLRDNVYGTIDE 146
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D R RDFTIN+++++ I+DYA G+ DL +R + + ED R+L
Sbjct: 147 DAER------RDFTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRML 200
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L +D + L+ + + +R+ E ML + L+R+YN
Sbjct: 201 RAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAAHGLETYHLMRQYN 260
Query: 293 LLKILLP 299
L + L P
Sbjct: 261 LFQQLFP 267
>gi|421480461|ref|ZP_15928084.1| poly(A) polymerase [Burkholderia multivorans CF2]
gi|400221019|gb|EJO51508.1| poly(A) polymerase [Burkholderia multivorans CF2]
Length = 512
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 130/249 (52%), Gaps = 23/249 (9%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI A+I + + V L+ G++A++VGG VRDLLL PKDFDV T A +++R F
Sbjct: 62 GIDPALISKNAVRVTDTLQQAGYRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFR 121
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGC--DEID------ 173
R+ +IGRRF I V +IEVS+F + + ++ P DE+D
Sbjct: 122 RARLIGRRFQIVHVQFGQELIEVSTFRALV---DAPPEAATAEPPRRLKRDELDRRTHAV 178
Query: 174 -----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
++R W ++ RDFTIN++++DP + DY +G++D+R LR +
Sbjct: 179 DASGRVLRDNVWGEQHEDAARRDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGDPA 238
Query: 222 LSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAA 281
+ ED R+LR +R AA+LG +++L+ I + +R+ E+ +L G A
Sbjct: 239 TRYREDPVRMLRVVRFAAKLGFEIEPHTREPINALADLINNVPAARLFDEMLKLLLSGHA 298
Query: 282 ESSICLLRR 290
+ + LR+
Sbjct: 299 LACLQRLRK 307
>gi|56412460|ref|YP_149535.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197361396|ref|YP_002141031.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|56126717|gb|AAV76223.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197092871|emb|CAR58297.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 472
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 45 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 104
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 105 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 162 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLKEGVIRLIGNPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 216 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLRE 275
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 276 YHLFQPLFPTITRYFTENG 294
>gi|161760588|ref|YP_069273.2| poly(A) polymerase [Yersinia pseudotuberculosis IP 32953]
gi|186894092|ref|YP_001871204.1| poly(A) polymerase I [Yersinia pseudotuberculosis PB1/+]
gi|186697118|gb|ACC87747.1| poly(A) polymerase [Yersinia pseudotuberculosis PB1/+]
Length = 488
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 34/323 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L G++AYLVGG VRDLLL R PKDFD+ T+A +Q+R+ F
Sbjct: 62 ISRRDISDNALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRN 121
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F + + +++ +LL +G E
Sbjct: 122 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIE 181
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 182 DDAQR------RDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRM 235
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L +S + + L+S + + +R+ E +L G + L Y
Sbjct: 236 LRAVRFAAKLDMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 295
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLWV 343
L + L P A +Q ++PM +L+++ N D + D+ PA LW
Sbjct: 296 QLFQPLFPLIARNFTEQ-----HDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWY 350
Query: 344 GLLSFHQALVSDP----QDAFVV 362
L+ Q L + DAF +
Sbjct: 351 PLIEHAQKLTQESGLAYYDAFAL 373
>gi|161511462|ref|NP_991684.2| poly(A) polymerase [Yersinia pestis biovar Microtus str. 91001]
Length = 491
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 153/323 (47%), Gaps = 34/323 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I VL L G++AYLVGG VRDLLL R PKDFD+ T+A +Q+R+ F
Sbjct: 62 ISRRDISDNPLKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRN 121
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F + + +++ +LL +G E
Sbjct: 122 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIE 181
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 182 DDAQR------RDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRM 235
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L +S + + L+S + + +R+ E +L G + L Y
Sbjct: 236 LRAVRFAAKLDMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 295
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLWV 343
L + L P A +Q ++PM +L+++ N D + D+ PA LW
Sbjct: 296 QLFQPLFPLIARNFTEQ-----HDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWY 350
Query: 344 GLLSFHQALVSDP----QDAFVV 362
L+ Q L + DAF +
Sbjct: 351 PLIEHAQKLTQESGLAYYDAFAL 373
>gi|198245984|ref|YP_002214141.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|197940500|gb|ACH77833.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
Length = 437
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 10 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 181 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLRE 240
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 241 YHLFQPLFPTITRYFTENG 259
>gi|414593683|ref|ZP_11443325.1| poly(A) polymerase [Escherichia blattae NBRC 105725]
gi|403195291|dbj|GAB80977.1| poly(A) polymerase [Escherichia blattae NBRC 105725]
Length = 434
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 126/256 (49%), Gaps = 17/256 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 9 ISRKDISENALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRN 68
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F H E G+ +LL +G E D
Sbjct: 69 CRLVGRRFRLAHVMFGPEIIEVATFR--GHHEEQADRQQSQRGQNGMLLRDNIFGSIEED 126
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G++DLR +R + + ED R+LR
Sbjct: 127 AQR------RDFTINSLYYSVADFTVRDYVGGLNDLRAGIIRLIGTPETRYREDPVRMLR 180
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+L ++ + LS+ + + +R+ E +L G ++ LL Y L
Sbjct: 181 AVRFAAKLNMTIEPATGEPIPRLSTLLNDVPAARLYEESLKLLQSGYGYNTYRLLCEYQL 240
Query: 294 LKILLPFHAAYLDQQA 309
+ L P Y +
Sbjct: 241 FQPLFPTITRYFTENG 256
>gi|195873676|ref|ZP_02698162.2| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|205360723|ref|ZP_02685928.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|378953992|ref|YP_005211479.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|418762656|ref|ZP_13318783.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|418768556|ref|ZP_13324604.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|418770370|ref|ZP_13326391.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|418777626|ref|ZP_13333553.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|418779873|ref|ZP_13335768.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|418786620|ref|ZP_13342433.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|418787327|ref|ZP_13343130.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|418792795|ref|ZP_13348535.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|418796600|ref|ZP_13352292.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|418800854|ref|ZP_13356498.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|418805880|ref|ZP_13361458.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|418810241|ref|ZP_13365782.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|418830545|ref|ZP_13385506.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|418835485|ref|ZP_13390378.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|418842874|ref|ZP_13397683.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|418843592|ref|ZP_13398388.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|418849251|ref|ZP_13403984.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|418857313|ref|ZP_13411942.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|418862141|ref|ZP_13416686.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|418870392|ref|ZP_13424813.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|419788735|ref|ZP_14314419.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|419791502|ref|ZP_14317154.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|194405019|gb|ACF65241.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|195632749|gb|EDX51203.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|205347459|gb|EDZ34090.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|357204603|gb|AET52649.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|392616821|gb|EIW99250.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|392620365|gb|EIX02734.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|392731287|gb|EIZ88516.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|392736133|gb|EIZ93300.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|392736964|gb|EIZ94125.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|392743554|gb|EJA00624.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|392747450|gb|EJA04448.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|392751106|gb|EJA08062.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|392766507|gb|EJA23284.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|392766748|gb|EJA23521.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|392771469|gb|EJA28190.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|392782352|gb|EJA38989.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|392782445|gb|EJA39079.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|392784107|gb|EJA40716.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|392801235|gb|EJA57463.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|392803509|gb|EJA59702.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|392806587|gb|EJA62685.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|392816348|gb|EJA72276.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|392821735|gb|EJA77558.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392831075|gb|EJA86710.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|392835260|gb|EJA90858.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|392836830|gb|EJA92407.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
Length = 437
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 10 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 181 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLRE 240
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 241 YHLFQPLFPTITRYFTENG 259
>gi|149196126|ref|ZP_01873182.1| RNA-poly(A) polymerase [Lentisphaera araneosa HTCC2155]
gi|149140973|gb|EDM29370.1| RNA-poly(A) polymerase [Lentisphaera araneosa HTCC2155]
Length = 412
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 118/208 (56%), Gaps = 17/208 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQF--HRSEIIGRRFPI 132
++ L+ G + YLVGG VRDLL+ PKDFD+ T+A +Q+ F ++ IIGRRF I
Sbjct: 17 IISRLREAGHETYLVGGAVRDLLVGENPKDFDISTSATPEQVSAFFGKRKARIIGRRFKI 76
Query: 133 CRVHIKGSVIEVSSF-------ETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDF 185
V+ +G++ EV++F E A+ + E V + +G E D R RDF
Sbjct: 77 VHVYERGTLYEVATFRRTPNEKERSARPSDDGEIVWRDNV-WGSPEEDANR------RDF 129
Query: 186 TINSLFFDPF-LNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
T+N+LF DP NKI DY G++D+ K+R+L + FTED R+LR +++ A+ G
Sbjct: 130 TVNALFLDPTDKNKIIDYCGGVADIEDKKVRSLGDPMIRFTEDPVRMLRAVKLKAQYGFE 189
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMEL 272
F D++ A+ L+ I + + R+ E+
Sbjct: 190 FEDDVEKAIRELALKITLVSQRRLYEEI 217
>gi|432375068|ref|ZP_19618091.1| Poly(A) polymerase [Escherichia coli KTE11]
gi|430892326|gb|ELC14818.1| Poly(A) polymerase [Escherichia coli KTE11]
Length = 454
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM M+ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERMIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|375110899|ref|ZP_09757113.1| poly(A) polymerase [Alishewanella jeotgali KCTC 22429]
gi|374568931|gb|EHR40100.1| poly(A) polymerase [Alishewanella jeotgali KCTC 22429]
Length = 487
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 141/292 (48%), Gaps = 32/292 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + VL LK G+ AYLVGGC+RDLLL PKDFDV+T A ++I++ F
Sbjct: 55 AISRKDISPNALKVLYRLKDAGYDAYLVGGCIRDLLLGLQPKDFDVVTNAKPEEIKQVFR 114
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFE----------------TVAKHGEGKETVLLSQI 165
+IGRRF + V VIEV++F +++ HG+ +L
Sbjct: 115 NCRLIGRRFRLAHVVFGREVIEVATFRGHHSGVDDEEDSSKIASLSDHGQ-----ILRDN 169
Query: 166 PYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFT 225
YG E D R RDF++N+L++ IYD+ANG+ + ++ + +
Sbjct: 170 VYGTIEEDAER------RDFSVNALYYSIKDFAIYDFANGMQSIAERRIELIGDPETRYR 223
Query: 226 EDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285
ED R+LR +R A +L + D + L+ ++ + R+ EL M G +
Sbjct: 224 EDPVRMLRAIRFATKLNMQIAPDTARDIPELAVLLKNIPAPRLFDELVKMWLAGKGFDNF 283
Query: 286 CLLRRYNLLKILLPFHAAYLDQQA-GKITAENPMMLMRLFFNLDKLVSCDRP 336
L+R + K+LLP L Q+ GK ++ R + D+ V+ D+P
Sbjct: 284 MLMRELKVFKVLLPQLEKLLKQEPEGKAF----QLVTRALQDTDQRVAQDKP 331
>gi|429108934|ref|ZP_19170704.1| Poly(A) polymerase [Cronobacter malonaticus 507]
gi|426310091|emb|CCJ96817.1| Poly(A) polymerase [Cronobacter malonaticus 507]
Length = 448
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 140/283 (49%), Gaps = 21/283 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 20 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 79
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFET--------VAKHGEGKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F A G+ +LL +G E D
Sbjct: 80 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEENAGDRATSQRGQNGMLLRDNIFGSIEED 139
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G++DL+ +R + + ED R+LR
Sbjct: 140 AQR------RDFTINSLYYSVADFTVRDYVGGLNDLKEGIIRLIGDPETRYREDPVRMLR 193
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AARL + + + L++ + + +R+ E +L G ++ LL YNL
Sbjct: 194 AVRFAARLDMRISPETGEPIPRLATLLNDVPPARLFEESLKLLQTGYGYATYRLLCEYNL 253
Query: 294 LKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
+ L P + Y ++ ++PM ++ ++ N D + D
Sbjct: 254 FQPLFPGISRYFTEK-----GDSPMERIIAQVLKNTDHRIHND 291
>gi|393762864|ref|ZP_10351488.1| poly(A) polymerase [Alishewanella agri BL06]
gi|392606203|gb|EIW89090.1| poly(A) polymerase [Alishewanella agri BL06]
Length = 487
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 141/292 (48%), Gaps = 32/292 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + VL LK G+ AYLVGGC+RDLLL PKDFDV+T A ++I++ F
Sbjct: 55 AISRKDISPNALKVLYRLKDAGYDAYLVGGCIRDLLLGLQPKDFDVVTNAKPEEIKQVFR 114
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFE----------------TVAKHGEGKETVLLSQI 165
+IGRRF + V VIEV++F +++ HG+ +L
Sbjct: 115 NCRLIGRRFRLAHVVFGREVIEVATFRGHHSGADDEEDSSKIASLSDHGQ-----ILRDN 169
Query: 166 PYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFT 225
YG E D R RDF++N+L++ IYD+ANG+ + ++ + +
Sbjct: 170 VYGTIEEDAER------RDFSVNALYYSIKDFAIYDFANGMQSIAERRIELIGDPETRYR 223
Query: 226 EDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285
ED R+LR +R A +L + D + L+ ++ + R+ EL M G +
Sbjct: 224 EDPVRMLRAIRFATKLNMQIAPDTARDIPELAVLLKNIPAPRLFDELVKMWLAGKGFDNF 283
Query: 286 CLLRRYNLLKILLPFHAAYLDQQA-GKITAENPMMLMRLFFNLDKLVSCDRP 336
L+R + K+LLP L Q+ GK ++ R + D+ V+ D+P
Sbjct: 284 MLMRELKVFKVLLPQLEKLLKQEPEGKAF----QLVTRALQDTDQRVAQDKP 331
>gi|329914129|ref|ZP_08276062.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480]
gi|327545195|gb|EGF30466.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480]
Length = 455
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 132/250 (52%), Gaps = 8/250 (3%)
Query: 43 SFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVP 102
S ++ +D S + ++ GI ++ + V + L+ GF+A+LVGG VRDLLL P
Sbjct: 12 SKSKPIDRSIPVMLSAKEHGIDPKLVSSNAIRVTQGLQQAGFKAFLVGGAVRDLLLGIKP 71
Query: 103 KDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE--TV 160
KDFD+ T A +Q+R+ F R+ IIGRRF I V ++EV++F + K+
Sbjct: 72 KDFDIATNATPEQVRKLFRRAFIIGRRFQIVHVMFGQDLLEVTTFRGASVDAAPKDEHGR 131
Query: 161 LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPA 220
+L +G D +R RDFTIN++++DP + DY G++D+R LR +
Sbjct: 132 VLRDNTFGEQHEDAIR------RDFTINAMYYDPDTQTVLDYHGGMADIRNKTLRIIGVP 185
Query: 221 YLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGA 280
+ ED R+LR +R AA+L + + +++ I + +R+ E+ +L G
Sbjct: 186 EERYREDPVRLLRVVRFAAKLDFTIDAATAAPIKTMAPLINNVPAARVFDEMLKLLMSGH 245
Query: 281 AESSICLLRR 290
A + + LR+
Sbjct: 246 AMACLHHLRK 255
>gi|417355617|ref|ZP_12131423.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
gi|353598209|gb|EHC54708.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
Length = 445
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 258 YHLFQPLFPTITRYFTENG 276
>gi|120610653|ref|YP_970331.1| poly(A) polymerase [Acidovorax citrulli AAC00-1]
gi|120589117|gb|ABM32557.1| poly(A) polymerase [Acidovorax citrulli AAC00-1]
Length = 531
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 136/262 (51%), Gaps = 23/262 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V++ L+ G++AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 36 GIDPELVDRRATEVVRTLQQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFR 95
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKET---VLLSQIPYGC 169
R+ IIG+RF I VH +G VIEVS+F A+ G E L+ + +
Sbjct: 96 RAFIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAEQVSGNEKTSRAALAGMQHAV 155
Query: 170 DEIDLVR----W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D V W ++ RDFTIN++++DP + DY GI D R +R +
Sbjct: 156 DASGRVLRDNVWGPQDEDATRRDFTINAMYYDPATQVVVDYHKGIQDARKKVIRMIGDPA 215
Query: 222 LSFTEDCARILRGLRIAARL-GLSFCKDIDTAMHSLSSS--IERLDKSRIMMELNYMLSY 278
+ ED RI+R +R AA+L G+ F + TA + S + + +SR+ E+ +L
Sbjct: 216 TRYREDPVRIIRAVRFAAKLAGVGFTIEPKTAAPLVESQALLADVPQSRMFDEMLKLLQT 275
Query: 279 GAAESSICLLRRYNLLKILLPF 300
G A ++I LR+ L + P
Sbjct: 276 GHAIATIEQLRKLGLATGIYPL 297
>gi|398808986|ref|ZP_10567842.1| poly(A) polymerase [Variovorax sp. CF313]
gi|398086567|gb|EJL77181.1| poly(A) polymerase [Variovorax sp. CF313]
Length = 532
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 136/267 (50%), Gaps = 35/267 (13%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I A++ + + V+ L+ G++AY+VGG VRDLLL PKDFDV T A +Q++ F R
Sbjct: 36 IDPALVDERAKNVVTTLQQAGYEAYVVGGAVRDLLLGLRPKDFDVATNATPEQVKSLFRR 95
Query: 123 SEIIGRRFPICR-VHIKG---SVIEVSSF---------ETVA-------------KHGEG 156
+ IIGRRF I V+ +G VIEVS+F E VA KH
Sbjct: 96 AFIIGRRFRIVHVVYGRGREHEVIEVSTFRAYMDNAAAEQVAGNERTSKGELASMKHAVD 155
Query: 157 KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRT 216
+L +G E D R RDFT+N++++DP + DY NGI D + L LR
Sbjct: 156 ASGRVLRDNVWGPQEEDAAR------RDFTVNAMYYDPANQVVVDYHNGIKDAQKLTLRM 209
Query: 217 LIPAYLSFTEDCARILRGLRIAARL-GLSFCKDIDTAMHSLSSS--IERLDKSRIMMELN 273
+ + ED RI+R +R +A+L L F + TA + SS + + +SR+ E+
Sbjct: 210 IGDPATRYREDPVRIIRAIRFSAKLAALGFKMEAKTAAPLVESSKLLADVPQSRLFDEML 269
Query: 274 YMLSYGAAESSICLLRRYNLLKILLPF 300
+L G A +++ L + L + + P
Sbjct: 270 KLLQTGHAIATVEQLNKLGLARGIYPL 296
>gi|163750934|ref|ZP_02158167.1| polyA polymerase [Shewanella benthica KT99]
gi|161329358|gb|EDQ00355.1| polyA polymerase [Shewanella benthica KT99]
Length = 448
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 18/235 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL L GF+AYLVGG VRD+LL PKDFDV+T A ++I+ F +IGRRF +
Sbjct: 8 VLYRLHKSGFKAYLVGGGVRDILLGFQPKDFDVVTNATPEEIKGLFRNCRLIGRRFRLAH 67
Query: 135 VHIKGSVIEVSSF--------ETVAK-HGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDF 185
+ VIEV++ E ++K + EG+ LL YG + D R RDF
Sbjct: 68 IVFGRDVIEVATLRGHHVDSGEKISKTNAEGR---LLRDNVYGTIDEDAER------RDF 118
Query: 186 TINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSF 245
T+N+L++D I+ Y G+ DL+ +R + + ED R+LR +R A +LG++
Sbjct: 119 TVNALYYDISDFSIHSYGGGLQDLQSRTIRMIGDPNTRYREDPVRMLRAVRFATKLGMTI 178
Query: 246 CKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
KD + + L+ ++ + +R+ E+ + G A+++ ++R + L + L P
Sbjct: 179 EKDTASPISELAPLLKDIPAARMYEEILKLFFNGQAQNNFNMMRDFGLFEPLFPL 233
>gi|417472407|ref|ZP_12168123.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353654310|gb|EHC95616.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
Length = 477
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFRG---HHEGSESDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 258 YHLFQPLFPTITRYFTENG 276
>gi|386314936|ref|YP_006011101.1| poly(A) polymerase [Shewanella putrefaciens 200]
gi|319427561|gb|ADV55635.1| poly(A) polymerase [Shewanella putrefaciens 200]
Length = 494
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 126/245 (51%), Gaps = 16/245 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+AYLVGG VRDLLL PKDFDV+T A ++I++ F
Sbjct: 69 ISRKQISENALKVLYRLNKSGFKAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRN 128
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEIDL 174
++GRRF + + VIEV++F HGE E + LL YG EID
Sbjct: 129 CRVVGRRFRLAHIVFGRDVIEVATFR--GHHGESNEKISKANAEGRLLRDNVYG--EID- 183
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDFT+N+L++D I Y G++DL+ LR + + ED R+LR
Sbjct: 184 ---EDAERRDFTVNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRA 240
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L ++ + L+ + + +R+ E+ + G A ++ +++ Y L
Sbjct: 241 VRFATKLSMNIEDVTAKPIKQLAPLLTDIPAARMYEEVLKLFFAGKALANFEMMQEYKLF 300
Query: 295 KILLP 299
L P
Sbjct: 301 APLFP 305
>gi|253689485|ref|YP_003018675.1| poly(A) polymerase [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|251756063|gb|ACT14139.1| poly(A) polymerase [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 482
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 151/315 (47%), Gaps = 26/315 (8%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+ I + VL L G++AYLVGG VRDLLL + PKDFD+ T A Q+R+ F
Sbjct: 51 ISRSDISDNALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRN 110
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA-KHGEGKET----------VLLSQIPYGCDE 171
++GRRF + + VIEV++F +H E +ET +LL +G E
Sbjct: 111 CRLVGRRFRLAHIMFGPEVIEVATFRGHHDQHQEQQETKNSSQQAQSGMLLRDNIFGSVE 170
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF+INSL++ + DY G++DLR +R + + ED R+
Sbjct: 171 EDAQR------RDFSINSLYYSIADFSVRDYTGGLNDLRQGVIRMIGDPETRYREDPVRM 224
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L ++ + + L+S + + +R+ E +L G + +L Y
Sbjct: 225 LRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGHGYPTYKMLCEY 284
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD---RPA---DYTLWVGL 345
L + L P + Y G T E M+ ++ N D+ + + PA LW L
Sbjct: 285 QLFQPLFPLLSRYFTPN-GDSTLER--MVAQVLKNTDQRLQNNMRVNPAFLFSAMLWYPL 341
Query: 346 LSFHQALVSDPQDAF 360
+ Q L + A+
Sbjct: 342 IEHAQKLAQESGLAY 356
>gi|204927237|ref|ZP_03218439.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|204323902|gb|EDZ09097.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
Length = 454
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 198 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 258 YHLFQPLFPTITRYFTENG 276
>gi|120597644|ref|YP_962218.1| poly(A) polymerase [Shewanella sp. W3-18-1]
gi|146294217|ref|YP_001184641.1| poly(A) polymerase [Shewanella putrefaciens CN-32]
gi|120557737|gb|ABM23664.1| poly(A) polymerase [Shewanella sp. W3-18-1]
gi|145565907|gb|ABP76842.1| poly(A) polymerase [Shewanella putrefaciens CN-32]
Length = 494
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 126/245 (51%), Gaps = 16/245 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+AYLVGG VRDLLL PKDFDV+T A ++I++ F
Sbjct: 69 ISRKQISENALKVLYRLNKSGFKAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRN 128
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------LLSQIPYGCDEIDL 174
++GRRF + + VIEV++F HGE E + LL YG EID
Sbjct: 129 CRVVGRRFRLAHIVFGRDVIEVATFR--GHHGESNEKISKANAEGRLLRDNVYG--EID- 183
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
++ RDFT+N+L++D I Y G++DL+ LR + + ED R+LR
Sbjct: 184 ---EDAERRDFTVNALYYDISDYSIRSYGGGMADLKAGTLRLIGDPETRYREDPVRMLRA 240
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L ++ + L+ + + +R+ E+ + G A ++ +++ Y L
Sbjct: 241 VRFATKLSMNIEDVTAKPIKQLAPLLTDIPAARMYEEVLKLFFAGKALANFEMMQEYKLF 300
Query: 295 KILLP 299
L P
Sbjct: 301 APLFP 305
>gi|205357046|ref|ZP_02344374.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205324360|gb|EDZ12199.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
Length = 437
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 10 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 181 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLRE 240
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 241 YHLFQPLFPNITRYFTENG 259
>gi|333369992|ref|ZP_08462075.1| poly(A) polymerase I [Psychrobacter sp. 1501(2011)]
gi|332968759|gb|EGK07809.1| poly(A) polymerase I [Psychrobacter sp. 1501(2011)]
Length = 697
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 127/246 (51%), Gaps = 12/246 (4%)
Query: 58 SRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIR 117
++ LG+++A +P V+ L GF AY+VGG VRD LL PKDFD +T A +++
Sbjct: 6 AKQLGLSKADLPNSIIEVIATLSKAGFDAYIVGGGVRDTLLGLNPKDFDAVTDARPHEVK 65
Query: 118 RQF-HRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET---VLLSQIPYGCDEID 173
F R IIGRRF + V+ +IEV++F G+ T +++ +G D
Sbjct: 66 DLFGKRCRIIGRRFQLAHVYSGRDMIEVATFR-APPSGDAHTTSDGMIVRDNVWGDIHQD 124
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDF+IN+++++P +YD+ + + D++ LR L A L ED R+LR
Sbjct: 125 FAR------RDFSINAMYYEPLKGVVYDFCDALDDIKNKTLRLLGHAPLRIEEDPVRLLR 178
Query: 234 GLRIAARLGLSFCKDIDTAMHSLS-SSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
LR A+LG F D+ H + + ++++ R+ E M + G + LL Y
Sbjct: 179 ALRFKAKLGFEFDADLSEQFHDDNWALLDQVSPHRLYDESQKMFTGGYLVPLLPLLFEYG 238
Query: 293 LLKILL 298
++ L+
Sbjct: 239 AIRHLI 244
>gi|289665247|ref|ZP_06486828.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 455
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 136/289 (47%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T+A ++++ F
Sbjct: 33 ISRKDISPNALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F + G G + L+ YG E D +R
Sbjct: 93 CRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEDDAIR-- 150
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + L + ED R+LR +R+A
Sbjct: 151 ----RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLA 206
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + L+ + +R+ E+ + G SS L RY L L
Sbjct: 207 AKLDFEIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVSSFEGLERYGLFGALF 266
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + A M++ N D V+ D P LL
Sbjct: 267 PESAAALKSNRSGALRA----MVLEGLRNTDARVANDEPVSPAFLFALL 311
>gi|417791913|ref|ZP_12439328.1| poly(A) polymerase I [Cronobacter sakazakii E899]
gi|429104850|ref|ZP_19166719.1| Poly(A) polymerase [Cronobacter malonaticus 681]
gi|429120966|ref|ZP_19181621.1| Poly(A) polymerase [Cronobacter sakazakii 680]
gi|449309465|ref|YP_007441821.1| poly(A) polymerase I [Cronobacter sakazakii SP291]
gi|333953996|gb|EGL71883.1| poly(A) polymerase I [Cronobacter sakazakii E899]
gi|426291573|emb|CCJ92832.1| Poly(A) polymerase [Cronobacter malonaticus 681]
gi|426324596|emb|CCK12358.1| Poly(A) polymerase [Cronobacter sakazakii 680]
gi|449099498|gb|AGE87532.1| poly(A) polymerase I [Cronobacter sakazakii SP291]
Length = 448
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 140/283 (49%), Gaps = 21/283 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 20 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 79
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFET--------VAKHGEGKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F A G+ +LL +G E D
Sbjct: 80 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEENAGDRATSQRGQNGMLLRDNIFGSIEED 139
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G++DL+ +R + + ED R+LR
Sbjct: 140 AQR------RDFTINSLYYSVADFTVRDYVGGLNDLKEGIIRLIGDPETRYREDPVRMLR 193
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AARL + + + L++ + + +R+ E +L G ++ LL YNL
Sbjct: 194 AVRFAARLDMRISPETGEPIPRLATLLNDVPPARLFEESLKLLQTGYGYATYRLLCEYNL 253
Query: 294 LKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
+ L P + Y ++ ++PM ++ ++ N D + D
Sbjct: 254 FQPLFPGISRYFTEK-----GDSPMERIIAQVLKNTDHRIHND 291
>gi|432469065|ref|ZP_19711128.1| Poly(A) polymerase [Escherichia coli KTE205]
gi|433071055|ref|ZP_20257772.1| Poly(A) polymerase [Escherichia coli KTE129]
gi|430988199|gb|ELD04699.1| Poly(A) polymerase [Escherichia coli KTE205]
gi|431595604|gb|ELI65597.1| Poly(A) polymerase [Escherichia coli KTE129]
Length = 454
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
ILR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 ILRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFTL 336
>gi|429114053|ref|ZP_19174971.1| Poly(A) polymerase [Cronobacter sakazakii 701]
gi|426317182|emb|CCK01084.1| Poly(A) polymerase [Cronobacter sakazakii 701]
Length = 467
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 140/283 (49%), Gaps = 21/283 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 20 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 79
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFET--------VAKHGEGKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F A G+ +LL +G E D
Sbjct: 80 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEENAGDRATSQRGQNGMLLRDNIFGSIEED 139
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G++DL+ +R + + ED R+LR
Sbjct: 140 AQR------RDFTINSLYYSVADFTVRDYVGGLNDLKEGIIRLIGDPETRYREDPVRMLR 193
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AARL + + + L++ + + +R+ E +L G ++ LL YNL
Sbjct: 194 AVRFAARLDMRISPETGEPIPRLATLLNDVPPARLFEESLKLLQTGYGYATYRLLCEYNL 253
Query: 294 LKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
+ L P + Y ++ ++PM ++ ++ N D + D
Sbjct: 254 FQPLFPGISRYFTEK-----GDSPMERIIAQVLKNTDHRIHND 291
>gi|429103854|ref|ZP_19165828.1| Poly(A) polymerase [Cronobacter turicensis 564]
gi|426290503|emb|CCJ91941.1| Poly(A) polymerase [Cronobacter turicensis 564]
Length = 448
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 140/283 (49%), Gaps = 21/283 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 20 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 79
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F + E G+ +LL +G E D
Sbjct: 80 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEESESDRATSQRGQNGMLLRDNIFGSIEED 139
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G++DL +R + + ED R+LR
Sbjct: 140 AQR------RDFTINSLYYSVADFTVRDYVGGLNDLNEGIIRLIGDPETRYREDPVRMLR 193
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AARL + + + L++ + + +R+ E +L G ++ LL YNL
Sbjct: 194 AVRFAARLDMRISPETGEPIPRLATLLNDVPPARLFEESLKLLQAGYGYATYRLLCEYNL 253
Query: 294 LKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
+ L P + Y ++ ++PM ++ ++ N D + D
Sbjct: 254 FQPLFPGISRYFTEK-----GDSPMERIIAQVLKNTDHRIHND 291
>gi|238911251|ref|ZP_04655088.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
Length = 437
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 10 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 181 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLRE 240
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 241 YHLFQPLFPTITRYFTENG 259
>gi|302342303|ref|YP_003806832.1| poly(A) polymerase [Desulfarculus baarsii DSM 2075]
gi|301638916|gb|ADK84238.1| poly(A) polymerase [Desulfarculus baarsii DSM 2075]
Length = 425
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 134/282 (47%), Gaps = 13/282 (4%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF AYLVGG VRDLLL + PKDFDV T A Q+R F
Sbjct: 27 ISRDNIDPDALKVLYRLHRAGFTAYLVGGGVRDLLLGKKPKDFDVGTDARPGQVRNLFRN 86
Query: 123 SEIIGRRFPICRVHI-KGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSI 181
S +IGRRF + +V + ++EVS+F + E + VL + +G D +R
Sbjct: 87 SRVIGRRFRLVQVFFQRNKIVEVSTFRRASDPDE--DLVLQANNTFGSPAEDALR----- 139
Query: 182 HRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL 241
RD TIN++F++ I DY G+ DL+ +R + + F D R++R +R AAR
Sbjct: 140 -RDLTINAMFYNIADFSIVDYVGGMDDLKAGLIRAVGDPKIRFHRDPVRVMRAVRHAART 198
Query: 242 GLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFH 301
G + A+ + SRI EL L+ GAA + L + +L LLP
Sbjct: 199 GFQLTSETRQAVEDFRCELAVCPSSRIRDELMRDLAGGAAAPWLELAHQTKILYSLLPGL 258
Query: 302 AAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWV 343
Y Q A+ L +D+ V+ P D + V
Sbjct: 259 EKYYGQPDSHARAQAACNLA----AIDQAVAAGAPPDDAVIV 296
>gi|121605882|ref|YP_983211.1| poly(A) polymerase [Polaromonas naphthalenivorans CJ2]
gi|120594851|gb|ABM38290.1| poly(A) polymerase [Polaromonas naphthalenivorans CJ2]
Length = 540
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 137/274 (50%), Gaps = 35/274 (12%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
++ ++ GI ++ + + V+ +LK GFQAY+VGG VRDLL+ PKDFDV T A +Q
Sbjct: 34 IEVKDHGINPKLVDERAMDVVHVLKQAGFQAYIVGGAVRDLLVGLRPKDFDVATDATPEQ 93
Query: 116 IRRQFHRSEIIGRRFPICRV-HIKG---SVIEVSSF-----ETVAKHGEGKETVLLSQIP 166
++ F R+ IIGRRF I V + +G VIEVS+F +A+ G E S++
Sbjct: 94 VKSLFRRAFIIGRRFRIVHVIYGRGREHEVIEVSTFRAHMDNALAEQVGGNERTSKSELA 153
Query: 167 -----------------YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDL 209
+G E D R RDFTIN++++DP + DY NGI D
Sbjct: 154 GMKHAVHSSGRVLRDNVWGPMEEDAAR------RDFTINAMYYDPETEIVVDYHNGIGDA 207
Query: 210 RCLKLRTLIPAYLSFTEDCARILRGLRIAAR---LGLSFCKDIDTAMHSLSSSIERLDKS 266
+ +R + L + ED RI+R +R A+ LG F + + + + + +S
Sbjct: 208 KKKIVRMIGNPALRYREDPVRIIRAVRFGAKLNALGFKFEEKTSAPLKEMCGLLADVPQS 267
Query: 267 RIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
R+ E+ +L G + +SI L+ + + P
Sbjct: 268 RLFDEMLKLLQTGHSLASIAQLKELGMGTGIYPL 301
>gi|389842185|ref|YP_006344269.1| poly(A) polymerase I [Cronobacter sakazakii ES15]
gi|387852661|gb|AFK00759.1| poly(A) polymerase I [Cronobacter sakazakii ES15]
Length = 444
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 140/283 (49%), Gaps = 21/283 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 20 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 79
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFET--------VAKHGEGKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F A G+ +LL +G E D
Sbjct: 80 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEENAGDRATSQRGQNGMLLRDNIFGSIEED 139
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G++DL+ +R + + ED R+LR
Sbjct: 140 AQR------RDFTINSLYYSVADFTVRDYVGGLNDLKEGIIRLIGDPETRYREDPVRMLR 193
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AARL + + + L++ + + +R+ E +L G ++ LL YNL
Sbjct: 194 AVRFAARLDMRISPETGEPIPRLATLLNDVPPARLFEESLKLLQTGYGYATYRLLCEYNL 253
Query: 294 LKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
+ L P + Y ++ ++PM ++ ++ N D + D
Sbjct: 254 FQPLFPGISRYFTEK-----GDSPMERIIAQVLKNTDHRIHND 291
>gi|78047370|ref|YP_363545.1| polynucleotide adenylyltransferase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325924974|ref|ZP_08186400.1| poly(A) polymerase [Xanthomonas perforans 91-118]
gi|78035800|emb|CAJ23491.1| Polynucleotide adenylyltransferase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544637|gb|EGD15994.1| poly(A) polymerase [Xanthomonas perforans 91-118]
Length = 455
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 136/289 (47%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A ++++ F
Sbjct: 33 ISRKDISPNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F G G + L+ YG E D +R
Sbjct: 93 CRLIGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIEDDAIR-- 150
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + L + ED R+LR +R+A
Sbjct: 151 ----RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLA 206
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + L+ + +R+ E+ + G +S L RY LL +L
Sbjct: 207 AKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGVLF 266
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + A M++ N D V+ D P LL
Sbjct: 267 PESAAALKSNRSGALRA----MVLEGLRNTDARVANDEPVSPAFLFALL 311
>gi|445499484|ref|ZP_21466339.1| poly(A) polymerase PcnB [Janthinobacterium sp. HH01]
gi|444789479|gb|ELX11027.1| poly(A) polymerase PcnB [Janthinobacterium sp. HH01]
Length = 469
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 8/231 (3%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + V L+ G++A++VGG VRDLLL PKDFD+ T A +Q++R F
Sbjct: 31 GIDPRLLSSNAVRVTSTLQEAGYEAFVVGGAVRDLLLGVKPKDFDIATNATPEQVKRLFR 90
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFE--TVAKHGEGKETVLLSQIPYGCDEIDLVRWRN 179
R+ IIG+RF I V ++EV++F T+ + + +L +G D VR
Sbjct: 91 RAFIIGKRFQIVHVMFGQDLLEVTTFRGTTLDNAPKDEHGRVLRDNTFGSQAEDAVR--- 147
Query: 180 SIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAA 239
RDFTIN+++++P ++ DY GI D+R LR + + ED R+LR +R AA
Sbjct: 148 ---RDFTINAMYYNPANQQVLDYHGGIEDIRAKTLRIIGQPEARYREDPVRMLRVVRFAA 204
Query: 240 RLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+L + + + ++S I+ + +R+ E+ +L G A + + LR+
Sbjct: 205 KLKFTIEPNTGAPIAVMASLIDNVPAARVFDEMLKLLMSGQALACLQQLRK 255
>gi|421497615|ref|ZP_15944774.1| poly polymerase [Aeromonas media WS]
gi|407183398|gb|EKE57296.1| poly polymerase [Aeromonas media WS]
Length = 449
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 126/249 (50%), Gaps = 14/249 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRD+LL + PKDFD+ T A +QI+ F
Sbjct: 8 ISRKEISENALKVLYRLNKGGYEAYLVGGGVRDILLGKTPKDFDIATDATPEQIKALFSN 67
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFE------TVAKH--GEGKETVLLSQIPYGCDEIDL 174
+IGRRF + + VIEV++F +KH + E +LL YG E D
Sbjct: 68 CRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDA 127
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++ ++D+ GI DL KL + + ED R+LR
Sbjct: 128 ER------RDFTVNALYYSAKDFTLHDFEGGIEDLAERKLELIGDPETRYREDPVRMLRA 181
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L ++ + L+ ++ + +R+ E + G ++ LLR Y L
Sbjct: 182 VRFAAKLEMTISPRTAAPIRELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLF 241
Query: 295 KILLPFHAA 303
+ L P AA
Sbjct: 242 QPLFPQVAA 250
>gi|408373067|ref|ZP_11170765.1| poly(A) polymerase [Alcanivorax hongdengensis A-11-3]
gi|407766905|gb|EKF75344.1| poly(A) polymerase [Alcanivorax hongdengensis A-11-3]
Length = 440
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 137/283 (48%), Gaps = 18/283 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R + + VL L GFQAYLVGGC+RD+L R PKDFDV T A +Q+ R F R
Sbjct: 15 ISRKQFSRAALDVLYGLHKAGFQAYLVGGCLRDILSGRDPKDFDVATDATPEQVNRIFKR 74
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETV--------AKHGEGKET-VLLSQIPYGCDEID 173
S IIGRRF I V VIEVS+F + +H +ET ++L +G E D
Sbjct: 75 SRIIGRRFQIVHVRFGREVIEVSTFRAMNTDDNPDKQQHHAHEETGLVLRDNTWGSIEED 134
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+R RDFTIN+L+++ ++D+ + D+ + + + ED R+LR
Sbjct: 135 ALR------RDFTINALYYNIADFTLHDFVGSVDDIDDRIIHLIGDPQQRYREDPVRMLR 188
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
R AA+L D + ++ + ++ +R+ E+ + G A S L++ L
Sbjct: 189 AARFAAKLDFDIAADTADPIPDMAELLLQVPPARLFDEVLKLFLSGHARQSYEQLQQLGL 248
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
L P L + G I ML+ N D ++ ++P
Sbjct: 249 FAFLFPETQRALQGEQGAIWES---MLLAAMDNTDARLARNKP 288
>gi|346724712|ref|YP_004851381.1| polynucleotide adenylyltransferase [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346649459|gb|AEO42083.1| polynucleotide adenylyltransferase [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 455
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 136/289 (47%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A ++++ F
Sbjct: 33 ISRKDISPNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F G G + L+ YG E D +R
Sbjct: 93 CRLIGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIEDDAIR-- 150
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + L + ED R+LR +R+A
Sbjct: 151 ----RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLA 206
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + L+ + +R+ E+ + G +S L RY LL +L
Sbjct: 207 AKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGVLF 266
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + A M++ N D V+ D P LL
Sbjct: 267 PESAAALKSNRSGALRA----MVLEGLRNTDARVANDEPVSPAFLFALL 311
>gi|319762115|ref|YP_004126052.1| poly(A) polymerase [Alicycliphilus denitrificans BC]
gi|330826054|ref|YP_004389357.1| poly(A) polymerase [Alicycliphilus denitrificans K601]
gi|317116676|gb|ADU99164.1| poly(A) polymerase [Alicycliphilus denitrificans BC]
gi|329311426|gb|AEB85841.1| poly(A) polymerase [Alicycliphilus denitrificans K601]
Length = 522
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 138/262 (52%), Gaps = 23/262 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V++ LK G++AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 37 GIDPELVDRRATDVVRTLKQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFR 96
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKETVLLSQIPYGCDEI 172
R+ IIG+RF I VH +G VIEVS+F A+ G E +Q+ +
Sbjct: 97 RAFIIGKRFRIVHVVHGRGREHEVIEVSTFRAYMDNAAAEQVSGNEKTSKAQLSGMQHAV 156
Query: 173 D----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D ++R W ++ RDFT+N++++DP + D+ GI D + LR +
Sbjct: 157 DASGRVLRDNVWGPQDEDATRRDFTVNAMYYDPETQVVVDFHKGIEDAKRRVLRMIGDPA 216
Query: 222 LSFTEDCARILRGLRIAARLG-LSFCKDIDTAMHSLSSS--IERLDKSRIMMELNYMLSY 278
+ ED RI+R +R AA+L L F + TA L+ ++ + +SR+ E+ +L
Sbjct: 217 TRYREDPVRIIRAVRFAAKLSPLGFALEPKTAKPLLACEPLLQEVPQSRLFDEMLKLLQT 276
Query: 279 GAAESSICLLRRYNLLKILLPF 300
G A +S+ LR L K + P
Sbjct: 277 GHALASVAQLRGLGLEKGIYPL 298
>gi|383757195|ref|YP_005436180.1| poly(A) polymerase PcnB [Rubrivivax gelatinosus IL144]
gi|381377864|dbj|BAL94681.1| poly(A) polymerase PcnB [Rubrivivax gelatinosus IL144]
Length = 522
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 129/246 (52%), Gaps = 22/246 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ LK G++AY+VGG VRDLL+ PKDFDV T A +Q++ F R+ IIGRRF +
Sbjct: 52 VVRTLKDAGYEAYIVGGAVRDLLVNLRPKDFDVATNATPEQVKALFRRAFIIGRRFRLVH 111
Query: 135 VHIKG-----SVIEVSSFE-----TVAKHGEGKETVLLSQIPYGCDEID----LVR---W 177
V I G VIEVS+F A+ EG E + + +D ++R W
Sbjct: 112 V-IFGRGREHEVIEVSTFRAFMDPAAAEQVEGNEKTVRGEATDQRRVVDASGRVLRDNVW 170
Query: 178 ----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
++ RDFTIN++++DP + DY G++D R LR + + ED RI+R
Sbjct: 171 GPQIEDAARRDFTINAMYYDPTTQIVVDYHGGLADSRARVLRMIGDPETRYREDPVRIVR 230
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+RIAA+LG M +++ + + SR+ E+ +L G A S+ L++ L
Sbjct: 231 VVRIAAKLGFEVEPATRAPMRKMAALLANVPPSRMFDEMVKLLQTGHALKSLAELKKQGL 290
Query: 294 LKILLP 299
+ + P
Sbjct: 291 DQGVFP 296
>gi|161612545|ref|YP_001586510.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|374999925|ref|ZP_09724266.1| polynucleotide adenylyltransferase [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|416564843|ref|ZP_11763567.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|416652288|ref|ZP_11811609.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|416708096|ref|ZP_11832958.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|418491508|ref|ZP_13058024.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|418495103|ref|ZP_13061548.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|418501423|ref|ZP_13067812.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|418504143|ref|ZP_13070502.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|418524238|ref|ZP_13090225.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|449306276|ref|YP_002113212.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|452121502|ref|YP_007471750.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
gi|161361909|gb|ABX65677.1| hypothetical protein SPAB_00235 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|323228577|gb|EGA12706.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|353078143|gb|EHB43902.1| polynucleotide adenylyltransferase [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|363570190|gb|EHL54128.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|366060144|gb|EHN24409.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|366061629|gb|EHN25874.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|366066937|gb|EHN31095.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|366072471|gb|EHN36563.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|366826892|gb|EHN53802.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|372207900|gb|EHP21397.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|451910506|gb|AGF82312.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
Length = 472
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 135/289 (46%), Gaps = 23/289 (7%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S Q V + + I+R I + + VL L G++AYLVGG
Sbjct: 15 FCRKVLSREESEAEQAVARPHMTIIPREQHAISRKDISENALKVLYRLNKAGYEAYLVGG 74
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 75 GVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 131
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG E+ +LL +G E D R RDFTINSL++ +
Sbjct: 132 GHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 185
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+L + + + L++ +
Sbjct: 186 DYVGGMQDLQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLL 245
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+ +R+ E +L G + LR Y+L + L P Y +
Sbjct: 246 NDIPPARLFEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 294
>gi|45435001|gb|AAS60561.1| poly(A) polymerase [Yersinia pestis biovar Microtus str. 91001]
Length = 473
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 153/323 (47%), Gaps = 34/323 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I VL L G++AYLVGG VRDLLL R PKDFD+ T+A +Q+R+ F
Sbjct: 44 ISRRDISDNPLKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRN 103
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F + + +++ +LL +G E
Sbjct: 104 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIE 163
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 164 DDAQR------RDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRM 217
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L +S + + L+S + + +R+ E +L G + L Y
Sbjct: 218 LRAVRFAAKLDMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 277
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLWV 343
L + L P A +Q ++PM +L+++ N D + D+ PA LW
Sbjct: 278 QLFQPLFPLIARNFTEQ-----HDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWY 332
Query: 344 GLLSFHQALVSDP----QDAFVV 362
L+ Q L + DAF +
Sbjct: 333 PLIEHAQKLTQESGLAYYDAFAL 355
>gi|366159411|ref|ZP_09459273.1| poly(A) polymerase I [Escherichia sp. TW09308]
Length = 472
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 45 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 104
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 105 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 162 EEDAQR------RDFTINSLYYSVADFSVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 216 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 275
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM M+ ++ N D + D PA W
Sbjct: 276 YHLFQPLFPTITRYFTE-----NGDSPMERMIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 330
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 331 YPLLETAQKIAQESGLTYHDAFAL 354
>gi|261820477|ref|YP_003258583.1| poly(A) polymerase I [Pectobacterium wasabiae WPP163]
gi|261604490|gb|ACX86976.1| poly(A) polymerase [Pectobacterium wasabiae WPP163]
Length = 482
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 151/315 (47%), Gaps = 26/315 (8%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+ I + VL L G++AYLVGG VRDLLL + PKDFD+ T A Q+R+ F
Sbjct: 51 ISRSDISDNALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRN 110
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA-KHGEGKET----------VLLSQIPYGCDE 171
++GRRF + + VIEV++F +H E +E +LL +G E
Sbjct: 111 CRLVGRRFRLAHIMFGPEVIEVATFRGHHDQHQEQQEVKNSSQQAQSGMLLRDNIFGSVE 170
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF+INSL++ + DY NG++DLR +R + + ED R+
Sbjct: 171 EDAQR------RDFSINSLYYSISDFSVRDYTNGLNDLRQGVIRMIGDPETRYREDPVRM 224
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L ++ + + L+S + + +R+ E +L G + +L Y
Sbjct: 225 LRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGYGYPTYKMLCEY 284
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD---RPA---DYTLWVGL 345
L + L P + + G T E M+ ++ N D+ + D PA LW L
Sbjct: 285 QLFQPLFPLLSRHFTPN-GDSTLER--MVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPL 341
Query: 346 LSFHQALVSDPQDAF 360
+ Q L + A+
Sbjct: 342 IEHAQKLAQESGLAY 356
>gi|398802891|ref|ZP_10562082.1| poly(A) polymerase [Polaromonas sp. CF318]
gi|398098134|gb|EJL88426.1| poly(A) polymerase [Polaromonas sp. CF318]
Length = 542
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 144/280 (51%), Gaps = 29/280 (10%)
Query: 44 FNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPK 103
F Q DV+ + GI +++ + V++ LK G++AY+VGG VRDLL+ PK
Sbjct: 28 FGQRQDVT------VKEHGIDVSLVDDRAMDVVRTLKDAGYEAYIVGGAVRDLLVGLRPK 81
Query: 104 DFDVITTANLKQIRRQFHRSEIIGRRFPICRV-HIKG---SVIEVSSF-----ETVAKHG 154
DFDV T A +Q++ F R+ IIGRRF I V + +G VIEVS+F ++A+
Sbjct: 82 DFDVATDATPEQVKSLFRRAFIIGRRFRIVHVIYGRGREHEVIEVSTFRAHLDSSLAEQV 141
Query: 155 EGKETVLLSQIPYGCDEID----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYA 203
G E S++ +D ++R W +++ RDFTIN++++DP + DY
Sbjct: 142 GGNERTSKSELAGMKHAVDASGRVLRDNVWGPIEQDAARRDFTINAMYYDPETQVVVDYH 201
Query: 204 NGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAAR---LGLSFCKDIDTAMHSLSSSI 260
NGI D + +R + + + ED RI+R +R AA+ LG F + + +
Sbjct: 202 NGIKDAKKRIIRMIGNPAVRYREDPVRIIRAVRFAAKLSALGFKFEDKTVAPLREMKGLL 261
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ +SR+ E+ +L G A +SI L+ L + P
Sbjct: 262 ADVPQSRLFDEMLKLLQTGHALASIAQLKFLGLGTGIYPL 301
>gi|197300656|ref|ZP_02660022.2| poly(A) polymerase (PAP) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|416423009|ref|ZP_11690587.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|416429647|ref|ZP_11694709.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|416439473|ref|ZP_11700192.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|416446730|ref|ZP_11705242.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|416454920|ref|ZP_11710545.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|416458251|ref|ZP_11712853.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|416469190|ref|ZP_11718403.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|416479116|ref|ZP_11722012.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|416494698|ref|ZP_11728325.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|416495221|ref|ZP_11728403.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|416507967|ref|ZP_11735764.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416522853|ref|ZP_11740741.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416531098|ref|ZP_11745447.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416533223|ref|ZP_11746191.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416547391|ref|ZP_11754563.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|416555558|ref|ZP_11759043.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|416572617|ref|ZP_11767362.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|416578064|ref|ZP_11770284.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|416588154|ref|ZP_11776690.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|416592404|ref|ZP_11779214.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|416600522|ref|ZP_11784469.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|416608854|ref|ZP_11789586.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|416612912|ref|ZP_11791849.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|416619843|ref|ZP_11795375.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|416633126|ref|ZP_11801764.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|416644956|ref|ZP_11807170.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|416657536|ref|ZP_11813752.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|416667637|ref|ZP_11818366.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|416680613|ref|ZP_11823358.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|416694743|ref|ZP_11827339.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|416710484|ref|ZP_11834589.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|416717375|ref|ZP_11839627.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|416726608|ref|ZP_11846669.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|416727880|ref|ZP_11847369.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|416739476|ref|ZP_11853879.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|416749781|ref|ZP_11859412.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|416754250|ref|ZP_11861228.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|416763422|ref|ZP_11867096.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|416767795|ref|ZP_11870171.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|418483915|ref|ZP_13052920.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|418508801|ref|ZP_13075103.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|194713171|gb|ACF92392.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197292033|gb|EDY31383.1| poly(A) polymerase (PAP) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|322616013|gb|EFY12930.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620797|gb|EFY17657.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623852|gb|EFY20689.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322627300|gb|EFY24091.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322630607|gb|EFY27371.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322638174|gb|EFY34875.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322640660|gb|EFY37311.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322645556|gb|EFY42083.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322648150|gb|EFY44617.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322657101|gb|EFY53384.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322657472|gb|EFY53744.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322663791|gb|EFY59991.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322666624|gb|EFY62802.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322672218|gb|EFY68330.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322676471|gb|EFY72542.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322679437|gb|EFY75482.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322686235|gb|EFY82219.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323195111|gb|EFZ80294.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197562|gb|EFZ82697.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323201168|gb|EFZ86237.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323212185|gb|EFZ97009.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323216489|gb|EGA01215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323220633|gb|EGA05081.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323225882|gb|EGA10102.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323236810|gb|EGA20886.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323239690|gb|EGA23737.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323242263|gb|EGA26292.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323249925|gb|EGA33821.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323252354|gb|EGA36205.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323255638|gb|EGA39391.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323262926|gb|EGA46476.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265411|gb|EGA48907.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323271802|gb|EGA55220.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|363549626|gb|EHL33961.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363551291|gb|EHL35610.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363552960|gb|EHL37237.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363560375|gb|EHL44522.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363568507|gb|EHL52485.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|363573169|gb|EHL57056.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|366060439|gb|EHN24702.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|366079291|gb|EHN43278.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
Length = 437
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 10 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 181 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLRE 240
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 241 YHLFQPLFPTITRYFTENG 259
>gi|418510723|ref|ZP_13077000.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|366085427|gb|EHN49310.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
Length = 437
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 10 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCD 170
++GRRF + V +IEV++F H EG E+ +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LR
Sbjct: 181 MLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLRE 240
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 241 YHLFQPLFPTITRYFTENG 259
>gi|440732116|ref|ZP_20912081.1| poly(a) polymerase [Xanthomonas translucens DAR61454]
gi|440370241|gb|ELQ07174.1| poly(a) polymerase [Xanthomonas translucens DAR61454]
Length = 447
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 136/289 (47%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A +Q+++ F
Sbjct: 15 VSRKDISPNALRVLYRLREAGFGAYLVGGAVRDLLVELQPKDFDVATDATPEQVKQLFRN 74
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F G G + L+ YG E D VR
Sbjct: 75 CRLIGRRFRLAHVVYGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGSIEDDAVR-- 132
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G +D++ +R + + ED R+LR +R+A
Sbjct: 133 ----RDFTCNALYYAIEDFSVRDYTGGFADVQARLMRMIGDPEQRYREDPVRMLRAVRLA 188
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + + L+ + +R+ E+ + G +S L RY LL L
Sbjct: 189 AKLNFEIEPNTAEPLPRLAGLLAEAAPARLFEEVLKLFLSGDGVASFEGLERYGLLAALF 248
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + ML+ N D V+ D P LL
Sbjct: 249 PESAAALHSNRSGALR----RMLIEGLRNTDARVANDEPVSPAFLFALL 293
>gi|254253161|ref|ZP_04946479.1| Poly(A) polymerase [Burkholderia dolosa AUO158]
gi|124895770|gb|EAY69650.1| Poly(A) polymerase [Burkholderia dolosa AUO158]
Length = 578
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/251 (31%), Positives = 122/251 (48%), Gaps = 29/251 (11%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I ++I + + V L+ GF+A++VGG VRDLLL PKDFDV T A +++R F R
Sbjct: 121 IDPSLISKNAVRVTDTLQQAGFRAFIVGGAVRDLLLGIAPKDFDVATDATPTEVQRLFRR 180
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAK-----------------------HGEGKET 159
+ +IGRRF I V +IEVS+F + H
Sbjct: 181 ARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPAAADAEPPRRLKRDELDRRTHAVDASG 240
Query: 160 VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIP 219
+L +G D R RDFTIN++++DP + DY +G++D+R LR +
Sbjct: 241 RVLRDNVWGEQHEDAAR------RDFTINAMYYDPSTQTVLDYHDGMADVRARLLRMIGD 294
Query: 220 AYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYG 279
F ED R+LR +R AA+LG +H+L+ I + +R+ E+ +L G
Sbjct: 295 PATRFREDPVRMLRVVRFAAKLGFEIEPHTREPIHALADLINNVPAARLFDEMLKLLLSG 354
Query: 280 AAESSICLLRR 290
A + + LR+
Sbjct: 355 HALACLQRLRK 365
>gi|406918016|gb|EKD56671.1| hypothetical protein ACD_58C00122G0008 [uncultured bacterium]
Length = 446
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 17/234 (7%)
Query: 70 QPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRR 129
Q S ++ L+S G++AY GGCVRD+LL PKDFD++T+A +I + F ++ IG++
Sbjct: 3 QTSIKIINKLRSAGYEAYWAGGCVRDILLGINPKDFDIVTSARPDEIEKMFGKTLKIGKQ 62
Query: 130 FPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRN----SIHRDF 185
F I + G+ E++++ + + + + D V W N + RDF
Sbjct: 63 FGIMVAIVDGNHYEIATYRSEGVYSDRRRP-------------DEVFWTNAKEDAFRRDF 109
Query: 186 TINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSF 245
TIN +F+DP K+ DY G DL+ ++ + ED RI+R +R LG SF
Sbjct: 110 TINGMFYDPINKKVIDYVGGQEDLKNKIIKFIGNPTNRIKEDHLRIIRAIRFKNVLGFSF 169
Query: 246 CKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
K A+ + S IE + RI ELN ML + SS+ L+ +LK +LP
Sbjct: 170 DKRTYEAIINNSYLIESVSYERIRDELNKMLVHTTRASSLIDLKETGILKHILP 223
>gi|152998010|ref|YP_001342845.1| poly(A) polymerase [Marinomonas sp. MWYL1]
gi|150838934|gb|ABR72910.1| poly(A) polymerase [Marinomonas sp. MWYL1]
Length = 484
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 140/292 (47%), Gaps = 27/292 (9%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL L GF A+LVGGCVRD L+ PKDFDV+T A +++ F S +IGRRF +
Sbjct: 47 VLYRLNKAGFDAFLVGGCVRDHLIGIKPKDFDVVTNATPEEVHTIFSNSRLIGRRFKLVH 106
Query: 135 VHIKGSVIEVSSFETVAKHG------------EGKET------VLLSQIPYGCDEIDLVR 176
V +IEVS+F + +GK++ ++L YG E D R
Sbjct: 107 VTFGREIIEVSTFRANSAQDDSDDDDTQNSSLKGKDSARSAHGIVLRDNVYGNIEEDAER 166
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFT N+L+++ I+DY G+ D+ ++R + A + ED R+LR +R
Sbjct: 167 ------RDFTFNALYYNVKDFSIHDYCGGLKDIENKQIRIIGDARQRYQEDPVRMLRAIR 220
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A +LG + + ++ ++ + +R+ E+ +L G + LLR+Y L +
Sbjct: 221 FAGKLGFELEAETAAPIKEMAHLLDHIPPARLFEEVLKLLGSGNGIETFHLLRQYGLFRY 280
Query: 297 LLPFHAAYLDQQAGKITAENP--MMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
L P A L Q K +P +L L D++ S A Y L+ LL
Sbjct: 281 LFPDTDALL-QSGWKRNDIDPEAFILQGLKNTDDRIQSGKTTAPYFLYAVLL 331
>gi|416333730|ref|ZP_11670838.1| Poly(A) polymerase [Escherichia coli WV_060327]
gi|320197403|gb|EFW72017.1| Poly(A) polymerase [Escherichia coli WV_060327]
Length = 454
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 152/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ ++ + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISQETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|260596566|ref|YP_003209137.1| poly(A) polymerase I [Cronobacter turicensis z3032]
gi|260215743|emb|CBA28132.1| Poly(A) polymerase [Cronobacter turicensis z3032]
Length = 479
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 128/256 (50%), Gaps = 14/256 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 51 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 110
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE--------GKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F + E G+ +LL +G E D
Sbjct: 111 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEESESDRATSQRGQNGMLLRDNIFGSIEED 170
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G++DL +R + + ED R+LR
Sbjct: 171 AQR------RDFTINSLYYSVADFTVRDYVGGLNDLNEGIIRLIGDPETRYREDPVRMLR 224
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AARL + + + L++ + + +R+ E +L G ++ LL YNL
Sbjct: 225 AVRFAARLDMRISPETGEPIPRLATLLNDVPPARLFEESLKLLQAGYGYATYRLLCEYNL 284
Query: 294 LKILLPFHAAYLDQQA 309
+ L P + Y ++
Sbjct: 285 FQPLFPGISRYFTEKG 300
>gi|238761613|ref|ZP_04622588.1| Poly(A) polymerase [Yersinia kristensenii ATCC 33638]
gi|238700127|gb|EEP92869.1| Poly(A) polymerase [Yersinia kristensenii ATCC 33638]
Length = 483
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 154/323 (47%), Gaps = 34/323 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF+AYLVGG VRDLLL + PKDFD+ T+A +Q+R+ F
Sbjct: 54 ISRRDISDNALKVLYRLNKSGFEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRN 113
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F + + +++ +LL +G E
Sbjct: 114 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGTIE 173
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 174 DDAQR------RDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGSPETRYREDPVRM 227
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L ++ + + L+S + + +R+ E +L G + L Y
Sbjct: 228 LRAVRFAAKLDMTISPETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEY 287
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLWV 343
L + L P A + + ++PM +L+++ N D + D+ PA LW
Sbjct: 288 QLFQPLFPLIARHFTEH-----HDSPMERILVQVLKNTDYRLHNDKRVNPAFLFAAMLWY 342
Query: 344 GLLSFHQALVSDP----QDAFVV 362
L+ Q L + DAF +
Sbjct: 343 PLIEHAQKLTQESGLAYYDAFAL 365
>gi|451936646|ref|YP_007460500.1| poly(A) polymerase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777569|gb|AGF48544.1| poly(A) polymerase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 430
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 7/239 (2%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI + I + + V + L GF+AY+VGG +RDL+L PKDFD+ T A +QI+ F
Sbjct: 27 GINKLNISENAIRVCETLNKNGFEAYIVGGAIRDLILGLKPKDFDIATNATPEQIKHIFK 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKE-TVLLSQIPYGCDEIDLVRWRNS 180
R+ IIG+RF + V +IE+S+F + + E +L+ +G D S
Sbjct: 87 RARIIGKRFRLVHVIFYKEIIEISTFRSSPIDIKQDEFGRILTDNYFGSQSED------S 140
Query: 181 IHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAAR 240
RDFTINSL++D I DY +G+ DL+ ++ + A + + ED RILR +R A++
Sbjct: 141 NRRDFTINSLYYDANSEIIIDYHDGVYDLKKKQVNLIGEASIRYREDPVRILRAIRFASK 200
Query: 241 LGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ S D + I + ++R+ EL +L+ G A + ++ NL L+P
Sbjct: 201 INGSISPDTLKYIEKQKELIANIPQARLFDELIKILTCGNALKCLLEIKSNNLHTFLIP 259
>gi|423205341|ref|ZP_17191897.1| poly(A) polymerase [Aeromonas veronii AMC34]
gi|404624136|gb|EKB20976.1| poly(A) polymerase [Aeromonas veronii AMC34]
Length = 496
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 126/249 (50%), Gaps = 14/249 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFD+ T A +QI+ F
Sbjct: 57 ISRKEISENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKALFSN 116
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFE------TVAKH--GEGKETVLLSQIPYGCDEIDL 174
+IGRRF + + VIEV++F +KH + E +LL YG E D
Sbjct: 117 CRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDA 176
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++ ++D+ G+ DL KL + + ED R+LR
Sbjct: 177 ER------RDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRA 230
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L ++ + L+ ++ + +R+ E + G ++ LLR Y L
Sbjct: 231 VRFAAKLDMTISPRTAAPIKELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLF 290
Query: 295 KILLPFHAA 303
+ L P AA
Sbjct: 291 QQLFPQVAA 299
>gi|90406862|ref|ZP_01215054.1| Poly(A) polymerase (PAP) (Plasmid copy number protein)
[Psychromonas sp. CNPT3]
gi|90312099|gb|EAS40192.1| Poly(A) polymerase (PAP) (Plasmid copy number protein)
[Psychromonas sp. CNPT3]
Length = 448
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 15/246 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+RA I + VL L + GF+A LVGG VRDLLL PKDFD+ T A ++I+ F
Sbjct: 13 ISRANIDDNALKVLYRLHNAGFRALLVGGAVRDLLLGLKPKDFDITTNATPEEIKALFRN 72
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDEID 173
+IGRRF + + VIEV++F + K + + +LL YG E D
Sbjct: 73 CRLIGRRFRLAHILFGREVIEVATFRGPHDQQSAQDKQKVKQSQGGMLLRDNVYGSLEED 132
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFT+N+L++D +YD+ NG+ DL+ KL + + + ED R+LR
Sbjct: 133 AER------RDFTVNALYYDIADFALYDFCNGMQDLKDRKLTLIGDPDVRYREDPVRMLR 186
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A+L L + + L++ ++ + +R E+ +L G + LL+ Y L
Sbjct: 187 AIRFTAKLDLEISPECAEPIRRLANLLQDIPAARHFDEVIKLLLSGQGLQTYRLLKEYKL 246
Query: 294 LKILLP 299
L++L P
Sbjct: 247 LQVLFP 252
>gi|365142746|ref|ZP_09347822.1| Poly(A) polymerase [Klebsiella sp. 4_1_44FAA]
gi|363651288|gb|EHL90363.1| Poly(A) polymerase [Klebsiella sp. 4_1_44FAA]
Length = 453
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 130/256 (50%), Gaps = 14/256 (5%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF------ETVAK--HGEGKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F T+ + G+ +LL +G E D
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTIDRVTSQRGQNGMLLRDNIFGSIEED 146
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G+ DL+ +R + + ED R+LR
Sbjct: 147 AQR------RDFTINSLYYSVADFTVRDYVGGMKDLQDGVIRLIGNPETRYREDPVRMLR 200
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+L ++ + + L++ + + +R+ E+ +L G + LLR Y+L
Sbjct: 201 AVRFAAKLNMTISPETAEPLPRLAALLHDVPPARLFEEVLKLLQAGYGYQTYMLLREYSL 260
Query: 294 LKILLPFHAAYLDQQA 309
+ L P Y ++
Sbjct: 261 FQPLFPTITRYFTERG 276
>gi|330828362|ref|YP_004391314.1| poly(A) polymerase [Aeromonas veronii B565]
gi|423201104|ref|ZP_17187684.1| poly(A) polymerase [Aeromonas veronii AER39]
gi|423210950|ref|ZP_17197503.1| poly(A) polymerase [Aeromonas veronii AER397]
gi|328803498|gb|AEB48697.1| Poly(A) polymerase [Aeromonas veronii B565]
gi|404614345|gb|EKB11346.1| poly(A) polymerase [Aeromonas veronii AER397]
gi|404618087|gb|EKB15008.1| poly(A) polymerase [Aeromonas veronii AER39]
Length = 488
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 126/249 (50%), Gaps = 14/249 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFD+ T A +QI+ F
Sbjct: 49 ISRKEISENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKALFSN 108
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFE------TVAKH--GEGKETVLLSQIPYGCDEIDL 174
+IGRRF + + VIEV++F +KH + E +LL YG E D
Sbjct: 109 CRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDA 168
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++ ++D+ G+ DL KL + + ED R+LR
Sbjct: 169 ER------RDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRA 222
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L ++ + L+ ++ + +R+ E + G ++ LLR Y L
Sbjct: 223 VRFAAKLDMTISPRTAAPIKELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLF 282
Query: 295 KILLPFHAA 303
+ L P AA
Sbjct: 283 QQLFPQVAA 291
>gi|429090362|ref|ZP_19153094.1| Poly(A) polymerase [Cronobacter universalis NCTC 9529]
gi|426510165|emb|CCK18206.1| Poly(A) polymerase [Cronobacter universalis NCTC 9529]
Length = 448
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 21/283 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++++LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 20 AISRKDISENALKVMYRLNKAGYESWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 79
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF-----ETV---AKHGEGKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F E+V A G+ +LL +G E D
Sbjct: 80 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEESVSDRATSQRGQNGMLLRDNIFGSIEED 139
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G++DL +R + + ED R+LR
Sbjct: 140 AQR------RDFTINSLYYSVADFTVRDYVGGLNDLNEGIIRLIGDPETRYREDPVRMLR 193
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AARL + + + L++ + + +R+ E +L G ++ LL YNL
Sbjct: 194 AVRFAARLDMRISSETGEPIPRLATLLNDVPPARLFEESLKLLQTGYGYATYRLLCEYNL 253
Query: 294 LKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
+ L P + Y ++ ++PM ++ ++ N D + D
Sbjct: 254 FQPLFPGISRYFTEK-----GDSPMERIIAQVLKNTDHRIHND 291
>gi|406678433|ref|ZP_11085609.1| poly(A) polymerase [Aeromonas veronii AMC35]
gi|404622514|gb|EKB19377.1| poly(A) polymerase [Aeromonas veronii AMC35]
Length = 488
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 126/249 (50%), Gaps = 14/249 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFD+ T A +QI+ F
Sbjct: 49 ISRKEISENALKVLYRLNKGGYEAYLVGGGVRDLLLGKTPKDFDIATDATPEQIKALFSN 108
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFE------TVAKH--GEGKETVLLSQIPYGCDEIDL 174
+IGRRF + + VIEV++F +KH + E +LL YG E D
Sbjct: 109 CRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNTSKHVSAQSDEGMLLRDNVYGTIEEDA 168
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFT+N+L++ ++D+ G+ DL KL + + ED R+LR
Sbjct: 169 ER------RDFTVNALYYSAKDFTLHDFEGGLEDLAERKLELIGDPETRYREDPVRMLRA 222
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L ++ + L+ ++ + +R+ E + G ++ LLR Y L
Sbjct: 223 VRFAAKLDMTISPRTAAPIKELAPLLQDIPAARLFEETLKLFLAGDGLATYKLLREYGLF 282
Query: 295 KILLPFHAA 303
+ L P AA
Sbjct: 283 QQLFPQVAA 291
>gi|213423730|ref|ZP_03356710.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
Length = 262
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 126/258 (48%), Gaps = 20/258 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 11 ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRN 70
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F H EG E+ +LL +G E
Sbjct: 71 CRLVGRRFRLAHVMFGPEIIEVATFR---GHNEGSESDRTTSQRGQNGMLLRDNIFGSIE 127
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 128 EDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRM 181
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L + + + L++ + + +R+ E +L G + LR Y
Sbjct: 182 LRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGFETYQQLREY 241
Query: 292 NLLKILLPFHAAYLDQQA 309
+L + L P Y +
Sbjct: 242 HLFQPLFPTITRYFTENG 259
>gi|422405455|ref|ZP_16482498.1| poly(A) polymerase, partial [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330880377|gb|EGH14526.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 407
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 115/229 (50%), Gaps = 20/229 (8%)
Query: 90 GGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFET 149
GGCVRD++L PKDFDV T A +Q+R +F + IIGRRF + +H +IEV++F
Sbjct: 1 GGCVRDMMLNITPKDFDVATNATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFR- 59
Query: 150 VAKHGEGKE------------TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLN 197
A H + E +L YG E D R RDFTIN+L++DP
Sbjct: 60 -ANHPQDDEEEDSNQSSRNESGRILRDNVYGTLEEDAQR------RDFTINALYYDPVSE 112
Query: 198 KIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLS 257
++ DYANG+ D+R +R + + ED R+LR +R AA+L K + SL+
Sbjct: 113 RVLDYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRSLA 172
Query: 258 SSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLD 306
+ + +R+ E+ + G A + +L L + L P + L+
Sbjct: 173 PMLRDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALE 221
>gi|417246538|ref|ZP_12039639.1| polynucleotide adenylyltransferase [Escherichia coli 9.0111]
gi|386209166|gb|EII19653.1| polynucleotide adenylyltransferase [Escherichia coli 9.0111]
Length = 454
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVVDFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|397169567|ref|ZP_10492999.1| poly(A) polymerase [Alishewanella aestuarii B11]
gi|396088871|gb|EJI86449.1| poly(A) polymerase [Alishewanella aestuarii B11]
Length = 487
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 140/292 (47%), Gaps = 32/292 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + VL LK G+ AYLVGGC+RDLLL PKDFDV+T A ++I++ F
Sbjct: 55 AISRKDISPNALKVLYRLKDAGYDAYLVGGCIRDLLLGLQPKDFDVVTNAKPEEIKQVFR 114
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFE----------------TVAKHGEGKETVLLSQI 165
+IGRRF + V VIEV++F +++ HG+ +L
Sbjct: 115 NCRLIGRRFRLAHVVFGREVIEVATFRGHHSGVDDEEDSSKIASLSDHGQ-----ILRDN 169
Query: 166 PYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFT 225
YG E D R RDF++N+L++ IYD+ANG+ + ++ + +
Sbjct: 170 VYGTIEEDAER------RDFSVNALYYSIKDFAIYDFANGMQSIAERRIELIGDPETRYR 223
Query: 226 EDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285
ED R+LR +R A +L + D + L+ ++ + R+ EL M G +
Sbjct: 224 EDPVRMLRAIRFATKLNMQIAPDTARDIPELAVLLKNIPAPRLFDELIKMWLAGKGFDNF 283
Query: 286 CLLRRYNLLKILLPFHAAYLDQQA-GKITAENPMMLMRLFFNLDKLVSCDRP 336
L+R + K+LLP L Q+ GK + R + D+ V+ D+P
Sbjct: 284 MLMRELKVFKVLLPQLEKLLKQEPEGKAF----QLATRALQDTDQRVAQDKP 331
>gi|121591044|ref|ZP_01678360.1| polyA polymerase [Vibrio cholerae 2740-80]
gi|121547115|gb|EAX57248.1| polyA polymerase [Vibrio cholerae 2740-80]
Length = 420
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 119/235 (50%), Gaps = 18/235 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F +IGRRF +
Sbjct: 4 VLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAH 63
Query: 135 VHIKGSVIEVSSFETVAKHGEGKET----------VLLSQIPYGCDEIDLVRWRNSIHRD 184
+ ++EV++F H E ++ +LL YG + D R RD
Sbjct: 64 IMFGRDIVEVATFR--GHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER------RD 115
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+++++ I+DYA G+ DL +R + + ED R+LR +R A +L
Sbjct: 116 FTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLDFD 175
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+D + L+ + + +R+ E ML G + L+R+YNL + L P
Sbjct: 176 IEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFP 230
>gi|322834354|ref|YP_004214381.1| poly(A) polymerase [Rahnella sp. Y9602]
gi|321169555|gb|ADW75254.1| poly(A) polymerase [Rahnella sp. Y9602]
Length = 568
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 148/313 (47%), Gaps = 33/313 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL + PKDFD+ T A Q+R+ F
Sbjct: 138 ISRRDISENALKVLYRLNKSGFEAFLVGGGVRDLLLDKKPKDFDITTNATPDQVRKLFRN 197
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET------------VLLSQIPYGCD 170
++GRRF + V +IEV++F H + +ET +LL +G
Sbjct: 198 CRLVGRRFRLAHVMFGPEIIEVATFR--GHHEQHEETEDKNVSQQAVNGMLLRDNIFGTI 255
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL +R + + ED R
Sbjct: 256 EDDAQR------RDFTINSLYYGVADFTVRDYTGGLRDLENGIIRLIGDPETRYREDPVR 309
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ ++ + +R+ E +L G + L
Sbjct: 310 MLRAVRFAAKLDMKISPETAEPIPRLATLLQEIPPARLFEESLKLLQAGYGYETYKKLCE 369
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLW 342
Y L + L P A +Q ++PM +L+++ N D + D+ PA LW
Sbjct: 370 YQLFQPLFPLIARQFTEQ-----GDSPMEHILIQVLKNTDHRLHNDQRVNPAFLFAAMLW 424
Query: 343 VGLLSFHQALVSD 355
++ Q L +
Sbjct: 425 YPVIEHAQKLAQE 437
>gi|283783928|ref|YP_003363793.1| poly(A) polymerase [Citrobacter rodentium ICC168]
gi|282947382|emb|CBG86927.1| poly(A) polymerase [Citrobacter rodentium ICC168]
Length = 472
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 160/348 (45%), Gaps = 36/348 (10%)
Query: 35 MCREMCS-DSFNQEVDVS--NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S + EV V+ + + I+R I + + V+ L G++A+LVGG
Sbjct: 15 FCRKVLSREESEAEVAVARPHMTVIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGG 74
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A Q+R+ F ++GRRF + V +IEV++F
Sbjct: 75 GVRDLLLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 131
Query: 152 KHGEGKET-----------VLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H EG E+ +LL +G E D R RDFTINSL++ +
Sbjct: 132 GHHEGSESDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 185
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+L + + + L++ +
Sbjct: 186 DYVGGMKDLQDGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLL 245
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPM-- 318
+ +R+ E +L G + LR Y+L + L P Y + ++PM
Sbjct: 246 NDIPPARLFEESLKLLQSGYGYETYLKLREYSLFQPLFPTITRYFTE-----NGDSPMER 300
Query: 319 MLMRLFFNLDKLVSCD---RPA---DYTLWVGLLSFHQALVSDPQDAF 360
++ ++ N D + D PA W LL Q + + A+
Sbjct: 301 IIAQVLKNTDNRIHNDMRVNPAFLFAAMFWYPLLEMAQKIAQESGLAY 348
>gi|429462560|ref|YP_007184023.1| poly(A) polymerase [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|429338074|gb|AFZ82497.1| poly(A) polymerase [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
Length = 409
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 131/227 (57%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V + L+ GF +Y+VGG +RDL++ PKDFD+ T A+ +++R F R+ IIG+RF I
Sbjct: 25 VCETLQKAGFVSYIVGGAIRDLIVGLKPKDFDIATNASPEEVRSLFRRAYIIGKRFRIVH 84
Query: 135 VHIKGSVIEVSSFET--VAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
V + +IE+S+F + + K G+ +L +G + D R RDFTINSL++
Sbjct: 85 VIMGKELIEISTFRSPPLEKDEFGR---ILKDNSFGSHQEDASR------RDFTINSLYY 135
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
+P +I DY +G+ DL+ ++R + A + ED R+LR +R++ ++ + K+ +
Sbjct: 136 NPMKQEIIDYYSGLKDLKYKRIRIIGNAGERYREDPVRMLRAIRLSTKINGTLEKNTNIE 195
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ +L I + ++R+ E+ +L+ G + S + L N+L L+P
Sbjct: 196 IDALKDLIVNIPQARLFDEIIKILTCGNSFSCLEQLHAKNILHNLIP 242
>gi|432567017|ref|ZP_19803549.1| Poly(A) polymerase [Escherichia coli KTE53]
gi|431103596|gb|ELE08239.1| Poly(A) polymerase [Escherichia coli KTE53]
Length = 454
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPLPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|337280428|ref|YP_004619900.1| polynucleotide adenylyltransferase [Ramlibacter tataouinensis
TTB310]
gi|334731505|gb|AEG93881.1| Candidate polynucleotide adenylyltransferase [Ramlibacter
tataouinensis TTB310]
Length = 527
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 138/275 (50%), Gaps = 37/275 (13%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
V + GI +++ + V+ L+ G+QAY+VGG VRDLLL PKDFDV T A +Q
Sbjct: 28 VGPQEHGIDVSLVDDRAVNVVHTLQEAGYQAYIVGGAVRDLLLGLRPKDFDVATDATPEQ 87
Query: 116 IRRQFHRSEIIGRRFPICR-VHIKG---SVIEVSSF---------ETVA----------- 151
++ F R+ IIGRRF I V+ +G VIEVS+F E VA
Sbjct: 88 VKGLFRRAFIIGRRFRIVHVVYGRGREHEVIEVSTFRAHMDNQAAEAVAGNEKTSRGELA 147
Query: 152 --KHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDL 209
KH +L +G E D R RDFTIN++++DP + DY GI D
Sbjct: 148 GMKHAVDASGRVLRDNVWGPQEEDATR------RDFTINAMYYDPQTQTLVDYHGGIQDA 201
Query: 210 RCLKLRTLIPAYLSFTEDCARILRGLRIAARL-GLSFCKDIDTAMHSLSSSIERL---DK 265
R LR + A + ED RI+R +R AA+L L F + T + +L+ S+ L +
Sbjct: 202 RKKTLRMIGDAAARYREDPVRIIRAVRFAAKLHPLGFKLEAKT-LAALAPSLPLLAEVPQ 260
Query: 266 SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
SR+ E+ +L G A ++I L+ L + + P
Sbjct: 261 SRLFDEMLKLLQTGHALATIVQLKALGLARGIYPL 295
>gi|320354859|ref|YP_004196198.1| poly(A) polymerase [Desulfobulbus propionicus DSM 2032]
gi|320123361|gb|ADW18907.1| poly(A) polymerase [Desulfobulbus propionicus DSM 2032]
Length = 464
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 130/258 (50%), Gaps = 11/258 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL L+ GF+ YLVGG VRDL L R PKDFD+ T A Q+R+ F S IGRRF + +
Sbjct: 42 VLYRLRDAGFKGYLVGGGVRDLYLGRTPKDFDISTDARPGQLRQLFRNSRTIGRRFRLVQ 101
Query: 135 VHIKGS-VIEVSSFETVAKHG-EGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
V +G+ +IEVS+ + ++ +G + VL S +G E D R RD TIN+LF+
Sbjct: 102 VFFRGNKIIEVSTLRSSSEFDIDGDDAVLPSNNTFGTLEEDAFR------RDLTINALFY 155
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
+ + I DY G+ DL +R + FT D R++R +R AAR G S D A
Sbjct: 156 EIENHTIIDYTGGVRDLDDGIIRVVGDPDRRFTRDPVRMMRVVRHAARTGFSIEDDTFAA 215
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKI 312
+ + SRI E+ L GA+ L +L L P +A L G+
Sbjct: 216 LRRHREKLLLCPPSRIRDEVLKDLQSGASRPWAELCMTSSLWAALFPLYADALQGGDGER 275
Query: 313 TAENPMMLMRLFFNLDKL 330
+ L+ +F LD+L
Sbjct: 276 IRQE---LLNIFTVLDRL 290
>gi|418531618|ref|ZP_13097529.1| poly(A) polymerase [Comamonas testosteroni ATCC 11996]
gi|371451120|gb|EHN64161.1| poly(A) polymerase [Comamonas testosteroni ATCC 11996]
Length = 521
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 157/298 (52%), Gaps = 30/298 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V++ LKS G++AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 36 GIDPNLVDRRAIDVVQTLKSSGYEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKNLFR 95
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKETVLLSQIPYGCDEI 172
R+ IIG+RF I V+ +G VIEVS+F + A+ G E +Q+ +
Sbjct: 96 RAFIIGKRFRIVHVVYGRGRENEVIEVSTFRAFLDNSAAEQVSGNERTSKNQLAGLKHAV 155
Query: 173 D----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D ++R W +++ RDFTIN++++DP + DY GI+D + LR +
Sbjct: 156 DASGRVLRDNVWGPQDQDATRRDFTINAMYYDPETQIVVDYHGGIADAKKKVLRMIGDPA 215
Query: 222 LSFTEDCARILRGLRIAARL-GLSFCKDIDTA--MHSLSSSIERLDKSRIMMELNYMLSY 278
+ ED RI+R +R AA+L G F + TA + ++ + +SR+ E+ +L
Sbjct: 216 TRYREDPVRIIRAVRFAAKLSGKGFKLEAKTAKPLVECEPLLQEVPQSRLFDEMLKLLQT 275
Query: 279 GAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
G A +S+ L+ L + + P +++ A++P + L + D+ V+ +P
Sbjct: 276 GHALASVAQLKELGLSRGIYPLLDVVMER------ADHPFVQAAL-MDTDRRVAEGKP 326
>gi|162420585|ref|YP_001605569.1| poly(A) polymerase I [Yersinia pestis Angola]
gi|165925807|ref|ZP_02221639.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|166010184|ref|ZP_02231082.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166214122|ref|ZP_02240157.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. B42003004]
gi|167398734|ref|ZP_02304258.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167420762|ref|ZP_02312515.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423197|ref|ZP_02314950.1| poly(A) polymerase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229839037|ref|ZP_04459196.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229896516|ref|ZP_04511684.1| Poly(A) polymerase [Yersinia pestis Pestoides A]
gi|229899602|ref|ZP_04514743.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. India
195]
gi|229901064|ref|ZP_04516187.1| Poly(A) polymerase [Yersinia pestis Nepal516]
gi|294505105|ref|YP_003569167.1| poly(A) polymerase [Yersinia pestis Z176003]
gi|384416096|ref|YP_005625458.1| Poly(A) polymerase [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|420548520|ref|ZP_15046320.1| poly(A) polymerase [Yersinia pestis PY-01]
gi|420553864|ref|ZP_15051089.1| poly(A) polymerase [Yersinia pestis PY-02]
gi|420559472|ref|ZP_15055962.1| poly(A) polymerase [Yersinia pestis PY-03]
gi|420564849|ref|ZP_15060794.1| poly(A) polymerase [Yersinia pestis PY-04]
gi|420569901|ref|ZP_15065381.1| poly(A) polymerase [Yersinia pestis PY-05]
gi|420575564|ref|ZP_15070505.1| poly(A) polymerase [Yersinia pestis PY-06]
gi|420580872|ref|ZP_15075333.1| poly(A) polymerase [Yersinia pestis PY-07]
gi|420586234|ref|ZP_15080186.1| poly(A) polymerase [Yersinia pestis PY-08]
gi|420591343|ref|ZP_15084782.1| poly(A) polymerase [Yersinia pestis PY-09]
gi|420596743|ref|ZP_15089638.1| poly(A) polymerase [Yersinia pestis PY-10]
gi|420602408|ref|ZP_15094671.1| poly(A) polymerase [Yersinia pestis PY-11]
gi|420607813|ref|ZP_15099569.1| poly(A) polymerase [Yersinia pestis PY-12]
gi|420613220|ref|ZP_15104415.1| poly(A) polymerase [Yersinia pestis PY-13]
gi|420618583|ref|ZP_15109088.1| poly(A) polymerase family protein [Yersinia pestis PY-14]
gi|420623903|ref|ZP_15113885.1| poly(A) polymerase [Yersinia pestis PY-15]
gi|420628898|ref|ZP_15118414.1| poly(A) polymerase [Yersinia pestis PY-16]
gi|420634091|ref|ZP_15123069.1| poly(A) polymerase [Yersinia pestis PY-19]
gi|420639308|ref|ZP_15127764.1| poly(A) polymerase [Yersinia pestis PY-25]
gi|420644769|ref|ZP_15132754.1| poly(A) polymerase [Yersinia pestis PY-29]
gi|420650063|ref|ZP_15137530.1| poly(A) polymerase [Yersinia pestis PY-32]
gi|420655700|ref|ZP_15142598.1| poly(A) polymerase [Yersinia pestis PY-34]
gi|420661128|ref|ZP_15147449.1| poly(A) polymerase [Yersinia pestis PY-36]
gi|420666491|ref|ZP_15152282.1| poly(A) polymerase [Yersinia pestis PY-42]
gi|420671344|ref|ZP_15156706.1| poly(A) polymerase family protein [Yersinia pestis PY-45]
gi|420676694|ref|ZP_15161571.1| poly(A) polymerase [Yersinia pestis PY-46]
gi|420682240|ref|ZP_15166577.1| poly(A) polymerase [Yersinia pestis PY-47]
gi|420687654|ref|ZP_15171392.1| poly(A) polymerase [Yersinia pestis PY-48]
gi|420692902|ref|ZP_15175994.1| poly(A) polymerase [Yersinia pestis PY-52]
gi|420698654|ref|ZP_15181059.1| poly(A) polymerase [Yersinia pestis PY-53]
gi|420704500|ref|ZP_15185691.1| poly(A) polymerase family protein [Yersinia pestis PY-54]
gi|420709839|ref|ZP_15190450.1| poly(A) polymerase [Yersinia pestis PY-55]
gi|420715293|ref|ZP_15195294.1| poly(A) polymerase [Yersinia pestis PY-56]
gi|420720813|ref|ZP_15200021.1| poly(A) polymerase [Yersinia pestis PY-58]
gi|420726277|ref|ZP_15204836.1| poly(A) polymerase [Yersinia pestis PY-59]
gi|420731799|ref|ZP_15209798.1| poly(A) polymerase [Yersinia pestis PY-60]
gi|420732873|ref|ZP_15210766.1| poly(A) polymerase [Yersinia pestis PY-61]
gi|420742265|ref|ZP_15219228.1| poly(A) polymerase [Yersinia pestis PY-63]
gi|420748104|ref|ZP_15224157.1| poly(A) polymerase [Yersinia pestis PY-64]
gi|420749458|ref|ZP_15225319.1| poly(A) polymerase [Yersinia pestis PY-65]
gi|420759326|ref|ZP_15233658.1| poly(A) polymerase [Yersinia pestis PY-66]
gi|420764571|ref|ZP_15238285.1| poly(A) polymerase [Yersinia pestis PY-71]
gi|420769800|ref|ZP_15242974.1| poly(A) polymerase [Yersinia pestis PY-72]
gi|420774770|ref|ZP_15247479.1| poly(A) polymerase [Yersinia pestis PY-76]
gi|420780394|ref|ZP_15252425.1| poly(A) polymerase [Yersinia pestis PY-88]
gi|420785990|ref|ZP_15257314.1| poly(A) polymerase [Yersinia pestis PY-89]
gi|420791047|ref|ZP_15261858.1| poly(A) polymerase family protein [Yersinia pestis PY-90]
gi|420796610|ref|ZP_15266864.1| poly(A) polymerase [Yersinia pestis PY-91]
gi|420801714|ref|ZP_15271448.1| poly(A) polymerase [Yersinia pestis PY-92]
gi|420807061|ref|ZP_15276294.1| poly(A) polymerase [Yersinia pestis PY-93]
gi|420812432|ref|ZP_15281111.1| poly(A) polymerase family protein [Yersinia pestis PY-94]
gi|420817930|ref|ZP_15286086.1| poly(A) polymerase [Yersinia pestis PY-95]
gi|420823249|ref|ZP_15290854.1| poly(A) polymerase [Yersinia pestis PY-96]
gi|420828329|ref|ZP_15295423.1| poly(A) polymerase [Yersinia pestis PY-98]
gi|420833934|ref|ZP_15300485.1| poly(A) polymerase [Yersinia pestis PY-99]
gi|420838875|ref|ZP_15304952.1| poly(A) polymerase [Yersinia pestis PY-100]
gi|420844075|ref|ZP_15309668.1| poly(A) polymerase [Yersinia pestis PY-101]
gi|420849736|ref|ZP_15314751.1| poly(A) polymerase [Yersinia pestis PY-102]
gi|420855418|ref|ZP_15319551.1| poly(A) polymerase [Yersinia pestis PY-103]
gi|420860516|ref|ZP_15324046.1| poly(A) polymerase [Yersinia pestis PY-113]
gi|115349027|emb|CAL21988.1| poly(A) polymerase [Yersinia pestis CO92]
gi|162353400|gb|ABX87348.1| poly(A) polymerase [Yersinia pestis Angola]
gi|165922419|gb|EDR39596.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165991091|gb|EDR43392.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166204753|gb|EDR49233.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. B42003004]
gi|166961568|gb|EDR57589.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167051238|gb|EDR62646.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167057367|gb|EDR67113.1| poly(A) polymerase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229681789|gb|EEO77882.1| Poly(A) polymerase [Yersinia pestis Nepal516]
gi|229687094|gb|EEO79169.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. India
195]
gi|229695403|gb|EEO85450.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229700590|gb|EEO88621.1| Poly(A) polymerase [Yersinia pestis Pestoides A]
gi|294355564|gb|ADE65905.1| poly(A) polymerase [Yersinia pestis Z176003]
gi|320016600|gb|ADW00172.1| Poly(A) polymerase [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|391422579|gb|EIQ85145.1| poly(A) polymerase [Yersinia pestis PY-01]
gi|391422892|gb|EIQ85430.1| poly(A) polymerase [Yersinia pestis PY-02]
gi|391422919|gb|EIQ85452.1| poly(A) polymerase [Yersinia pestis PY-03]
gi|391437770|gb|EIQ98595.1| poly(A) polymerase [Yersinia pestis PY-04]
gi|391438748|gb|EIQ99465.1| poly(A) polymerase [Yersinia pestis PY-05]
gi|391442631|gb|EIR03013.1| poly(A) polymerase [Yersinia pestis PY-06]
gi|391454667|gb|EIR13853.1| poly(A) polymerase [Yersinia pestis PY-07]
gi|391455275|gb|EIR14405.1| poly(A) polymerase [Yersinia pestis PY-08]
gi|391457302|gb|EIR16252.1| poly(A) polymerase [Yersinia pestis PY-09]
gi|391470442|gb|EIR28110.1| poly(A) polymerase [Yersinia pestis PY-10]
gi|391471577|gb|EIR29123.1| poly(A) polymerase [Yersinia pestis PY-11]
gi|391472821|gb|EIR30247.1| poly(A) polymerase [Yersinia pestis PY-12]
gi|391486371|gb|EIR42410.1| poly(A) polymerase [Yersinia pestis PY-13]
gi|391488049|gb|EIR43926.1| poly(A) polymerase [Yersinia pestis PY-15]
gi|391488117|gb|EIR43993.1| poly(A) polymerase family protein [Yersinia pestis PY-14]
gi|391502644|gb|EIR56920.1| poly(A) polymerase [Yersinia pestis PY-16]
gi|391502699|gb|EIR56968.1| poly(A) polymerase [Yersinia pestis PY-19]
gi|391507654|gb|EIR61464.1| poly(A) polymerase [Yersinia pestis PY-25]
gi|391518490|gb|EIR71201.1| poly(A) polymerase [Yersinia pestis PY-29]
gi|391519836|gb|EIR72441.1| poly(A) polymerase [Yersinia pestis PY-34]
gi|391520751|gb|EIR73279.1| poly(A) polymerase [Yersinia pestis PY-32]
gi|391533058|gb|EIR84380.1| poly(A) polymerase [Yersinia pestis PY-36]
gi|391535866|gb|EIR86906.1| poly(A) polymerase [Yersinia pestis PY-42]
gi|391538335|gb|EIR89149.1| poly(A) polymerase family protein [Yersinia pestis PY-45]
gi|391551293|gb|EIS00817.1| poly(A) polymerase [Yersinia pestis PY-46]
gi|391551630|gb|EIS01124.1| poly(A) polymerase [Yersinia pestis PY-47]
gi|391551902|gb|EIS01370.1| poly(A) polymerase [Yersinia pestis PY-48]
gi|391566253|gb|EIS14267.1| poly(A) polymerase [Yersinia pestis PY-52]
gi|391567492|gb|EIS15350.1| poly(A) polymerase [Yersinia pestis PY-53]
gi|391571654|gb|EIS18978.1| poly(A) polymerase family protein [Yersinia pestis PY-54]
gi|391580776|gb|EIS26736.1| poly(A) polymerase [Yersinia pestis PY-55]
gi|391582783|gb|EIS28510.1| poly(A) polymerase [Yersinia pestis PY-56]
gi|391593310|gb|EIS37629.1| poly(A) polymerase [Yersinia pestis PY-58]
gi|391596556|gb|EIS40481.1| poly(A) polymerase [Yersinia pestis PY-60]
gi|391597388|gb|EIS41215.1| poly(A) polymerase [Yersinia pestis PY-59]
gi|391611475|gb|EIS53647.1| poly(A) polymerase [Yersinia pestis PY-63]
gi|391613683|gb|EIS55627.1| poly(A) polymerase [Yersinia pestis PY-64]
gi|391621377|gb|EIS62423.1| poly(A) polymerase [Yersinia pestis PY-61]
gi|391628146|gb|EIS68262.1| poly(A) polymerase [Yersinia pestis PY-66]
gi|391632571|gb|EIS72079.1| poly(A) polymerase [Yersinia pestis PY-65]
gi|391634621|gb|EIS73878.1| poly(A) polymerase [Yersinia pestis PY-71]
gi|391636497|gb|EIS75520.1| poly(A) polymerase [Yersinia pestis PY-72]
gi|391646779|gb|EIS84485.1| poly(A) polymerase [Yersinia pestis PY-76]
gi|391650096|gb|EIS87412.1| poly(A) polymerase [Yersinia pestis PY-88]
gi|391654541|gb|EIS91368.1| poly(A) polymerase [Yersinia pestis PY-89]
gi|391659781|gb|EIS96023.1| poly(A) polymerase family protein [Yersinia pestis PY-90]
gi|391667337|gb|EIT02682.1| poly(A) polymerase [Yersinia pestis PY-91]
gi|391676636|gb|EIT11023.1| poly(A) polymerase [Yersinia pestis PY-93]
gi|391677197|gb|EIT11525.1| poly(A) polymerase [Yersinia pestis PY-92]
gi|391677678|gb|EIT11963.1| poly(A) polymerase family protein [Yersinia pestis PY-94]
gi|391690717|gb|EIT23715.1| poly(A) polymerase [Yersinia pestis PY-95]
gi|391693435|gb|EIT26184.1| poly(A) polymerase [Yersinia pestis PY-96]
gi|391695084|gb|EIT27689.1| poly(A) polymerase [Yersinia pestis PY-98]
gi|391707887|gb|EIT39191.1| poly(A) polymerase [Yersinia pestis PY-99]
gi|391710870|gb|EIT41885.1| poly(A) polymerase [Yersinia pestis PY-100]
gi|391711552|gb|EIT42506.1| poly(A) polymerase [Yersinia pestis PY-101]
gi|391723736|gb|EIT53382.1| poly(A) polymerase [Yersinia pestis PY-102]
gi|391724286|gb|EIT53877.1| poly(A) polymerase [Yersinia pestis PY-103]
gi|391727237|gb|EIT56484.1| poly(A) polymerase [Yersinia pestis PY-113]
Length = 440
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 34/323 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L G++AYLVGG VRDLLL R PKDFD+ T+A +Q+R+ F
Sbjct: 11 ISRRDISDNALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRN 70
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F + + +++ +LL +G E
Sbjct: 71 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIE 130
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 131 DDAQR------RDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRM 184
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L +S + + L+S + + +R+ E +L G + L Y
Sbjct: 185 LRAVRFAAKLDMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 244
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLWV 343
L + L P A +Q ++PM +L+++ N D + D+ PA LW
Sbjct: 245 QLFQPLFPLIARNFTEQ-----HDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWY 299
Query: 344 GLLSFHQALVSDP----QDAFVV 362
L+ Q L + DAF +
Sbjct: 300 PLIEHAQKLTQESGLAYYDAFAL 322
>gi|383191550|ref|YP_005201678.1| poly(A) polymerase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371589808|gb|AEX53538.1| poly(A) polymerase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 571
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 148/313 (47%), Gaps = 33/313 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL + PKDFD+ T A Q+R+ F
Sbjct: 141 ISRRDISENALKVLYRLNKSGFEAFLVGGGVRDLLLDKKPKDFDITTNATPDQVRKLFRN 200
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET------------VLLSQIPYGCD 170
++GRRF + V +IEV++F H + +ET +LL +G
Sbjct: 201 CRLVGRRFRLAHVMFGPEIIEVATFR--GHHEQHEETDDKNVSQQAVNGMLLRDNIFGTI 258
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL +R + + ED R
Sbjct: 259 EDDAQR------RDFTINSLYYGVADFTVRDYTGGLRDLENGIIRLIGDPETRYREDPVR 312
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ ++ + +R+ E +L G + L
Sbjct: 313 MLRAVRFAAKLDMKISPETAGPIPRLATLLQEIPPARLFEESLKLLQAGYGLETYKKLCE 372
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLW 342
Y L + L P A +Q ++PM +L+++ N D + D+ PA LW
Sbjct: 373 YQLFQPLFPLIARQFTEQ-----GDSPMEHILLQVLKNTDHRLHNDQRVNPAFLFAAMLW 427
Query: 343 VGLLSFHQALVSD 355
++ Q L +
Sbjct: 428 YPVIEHAQKLAQE 440
>gi|429084597|ref|ZP_19147597.1| Poly(A) polymerase [Cronobacter condimenti 1330]
gi|426546284|emb|CCJ73638.1| Poly(A) polymerase [Cronobacter condimenti 1330]
Length = 448
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 140/283 (49%), Gaps = 21/283 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 20 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFR 79
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF-----ETV---AKHGEGKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F ET A G+ +LL +G E D
Sbjct: 80 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHEETANDRATSQRGQNGMLLRDNIFGSIEED 139
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G++DL +R + + ED R+LR
Sbjct: 140 AQR------RDFTINSLYYSVADFTVRDYVGGLNDLNDGIIRLIGDPETRYREDPVRMLR 193
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+L + + + L++ + + +R+ E +L G ++ LL YNL
Sbjct: 194 AVRFAAKLDMRISPETGEPIPRLATLLNDVPPARLFEESLKLLQAGYGYATYRLLCEYNL 253
Query: 294 LKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
+ L P + Y + ++PM ++ ++ N D + D
Sbjct: 254 FQPLFPGISRYFTE-----NGDSPMERIIAQVLKNTDNRIHND 291
>gi|301631513|ref|XP_002944842.1| PREDICTED: hypothetical protein LOC100491036 [Xenopus (Silurana)
tropicalis]
Length = 745
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/280 (33%), Positives = 146/280 (52%), Gaps = 29/280 (10%)
Query: 44 FNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPK 103
F + VDV + +V GI ++ + + V++ L+ GF AY+VGG VRDLLL PK
Sbjct: 23 FGKRVDV--YASVH----GINPELVDRRAVDVVRTLQDAGFAAYIVGGAVRDLLLGLRPK 76
Query: 104 DFDVITTANLKQIRRQFHRSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHG 154
DFDV T A +Q++ F R+ IIG+RF I VH +G VIEVS+F + A+
Sbjct: 77 DFDVATNATPEQVKGLFRRAFIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNSAAEQV 136
Query: 155 EGKE---TVLLSQIPYGCDEIDLVR----W----RNSIHRDFTINSLFFDPFLNKIYDYA 203
G E LS + + D V W +++ RDFT+N++++DP + DY
Sbjct: 137 SGNERTSKAQLSDMQHAVDASGRVLRDNVWGPQDQDAARRDFTVNAMYYDPETQVVVDYH 196
Query: 204 NGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARL-GLSFCKDIDTAMHSLSSS--I 260
GI D + LR + + ED RI+R +R AA+L L F + T ++S +
Sbjct: 197 KGIEDAQKRVLRMIGDPATRYREDPVRIIRAVRFAAKLSSLGFALEPKTGKPLVASQHLL 256
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPF 300
+ + +SR+ E+ +L G A +S+ L++ L K + P
Sbjct: 257 QEVPQSRLFDEMLKLLQTGHALASVQQLQKLGLEKGIYPL 296
>gi|294626060|ref|ZP_06704669.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664385|ref|ZP_06729745.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599662|gb|EFF43790.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605849|gb|EFF49140.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 455
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 135/289 (46%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A ++++ F
Sbjct: 33 ISRKDISPNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F G G + L+ YG E D +R
Sbjct: 93 CRLIGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIEDDAIR-- 150
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + L + ED R+LR +R+A
Sbjct: 151 ----RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPQLRYQEDPVRMLRAVRLA 206
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + L+ + +R+ E+ + G +S L RY LL L
Sbjct: 207 AKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLSALF 266
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + A M++ N D V+ D P LL
Sbjct: 267 PESAAALKSNRSGALRA----MVLEGLRNTDARVANDEPVSPAFLFALL 311
>gi|384427654|ref|YP_005637013.1| poly(A) polymerase [Xanthomonas campestris pv. raphani 756C]
gi|341936756|gb|AEL06895.1| poly(A) polymerase [Xanthomonas campestris pv. raphani 756C]
Length = 455
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 136/289 (47%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T+A ++++ F
Sbjct: 33 ISRKDISPNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATSATPEEVKALFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F G G + L+ YG E D +R
Sbjct: 93 CRLIGRRFRLAHVVFGREIIEVATFRANIDDGSGDRELDNGRLVRDNVYGTIEDDAIR-- 150
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + L + ED R+LR +R+A
Sbjct: 151 ----RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLA 206
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + L+ + +R+ E+ + G +S L RY LL L
Sbjct: 207 AKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGALF 266
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + A M++ N D V+ D P LL
Sbjct: 267 PESAAALKSNRSGALRA----MVLEGLRNTDARVANDEPVSPAFLFALL 311
>gi|293403213|ref|ZP_06647310.1| pcnB [Escherichia coli FVEC1412]
gi|298378747|ref|ZP_06988631.1| poly(A) polymerase [Escherichia coli FVEC1302]
gi|300900821|ref|ZP_07118963.1| polynucleotide adenylyltransferase [Escherichia coli MS 198-1]
gi|331661517|ref|ZP_08362441.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA143]
gi|417584961|ref|ZP_12235744.1| poly(A) polymerase family protein [Escherichia coli STEC_C165-02]
gi|419935251|ref|ZP_14452336.1| poly(A) polymerase I [Escherichia coli 576-1]
gi|432351777|ref|ZP_19595090.1| Poly(A) polymerase [Escherichia coli KTE2]
gi|432400223|ref|ZP_19642984.1| Poly(A) polymerase [Escherichia coli KTE26]
gi|432429254|ref|ZP_19671720.1| Poly(A) polymerase [Escherichia coli KTE181]
gi|432463996|ref|ZP_19706116.1| Poly(A) polymerase [Escherichia coli KTE204]
gi|432474140|ref|ZP_19716157.1| Poly(A) polymerase [Escherichia coli KTE208]
gi|432492447|ref|ZP_19734292.1| Poly(A) polymerase [Escherichia coli KTE213]
gi|432520792|ref|ZP_19757963.1| Poly(A) polymerase [Escherichia coli KTE228]
gi|432540966|ref|ZP_19777846.1| Poly(A) polymerase [Escherichia coli KTE235]
gi|432634589|ref|ZP_19870496.1| Poly(A) polymerase [Escherichia coli KTE80]
gi|432644180|ref|ZP_19879994.1| Poly(A) polymerase [Escherichia coli KTE83]
gi|432664300|ref|ZP_19899902.1| Poly(A) polymerase [Escherichia coli KTE116]
gi|432768952|ref|ZP_20003331.1| Poly(A) polymerase [Escherichia coli KTE50]
gi|432773295|ref|ZP_20007597.1| Poly(A) polymerase [Escherichia coli KTE54]
gi|432837703|ref|ZP_20071199.1| Poly(A) polymerase [Escherichia coli KTE140]
gi|432883834|ref|ZP_20099037.1| Poly(A) polymerase [Escherichia coli KTE158]
gi|432909701|ref|ZP_20116974.1| Poly(A) polymerase [Escherichia coli KTE190]
gi|432958872|ref|ZP_20149730.1| Poly(A) polymerase [Escherichia coli KTE202]
gi|433017117|ref|ZP_20205393.1| Poly(A) polymerase [Escherichia coli KTE105]
gi|433051358|ref|ZP_20238607.1| Poly(A) polymerase [Escherichia coli KTE122]
gi|433061351|ref|ZP_20248325.1| Poly(A) polymerase [Escherichia coli KTE125]
gi|433066264|ref|ZP_20253119.1| Poly(A) polymerase [Escherichia coli KTE128]
gi|433157081|ref|ZP_20341964.1| Poly(A) polymerase [Escherichia coli KTE177]
gi|433176504|ref|ZP_20360984.1| Poly(A) polymerase [Escherichia coli KTE82]
gi|433201584|ref|ZP_20385401.1| Poly(A) polymerase [Escherichia coli KTE95]
gi|291430128|gb|EFF03142.1| pcnB [Escherichia coli FVEC1412]
gi|298281081|gb|EFI22582.1| poly(A) polymerase [Escherichia coli FVEC1302]
gi|300355698|gb|EFJ71568.1| polynucleotide adenylyltransferase [Escherichia coli MS 198-1]
gi|331061432|gb|EGI33395.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA143]
gi|345342324|gb|EGW74720.1| poly(A) polymerase family protein [Escherichia coli STEC_C165-02]
gi|388404989|gb|EIL65428.1| poly(A) polymerase I [Escherichia coli 576-1]
gi|430881356|gb|ELC04610.1| Poly(A) polymerase [Escherichia coli KTE2]
gi|430930338|gb|ELC50839.1| Poly(A) polymerase [Escherichia coli KTE26]
gi|430948436|gb|ELC68024.1| Poly(A) polymerase [Escherichia coli KTE181]
gi|430983299|gb|ELC99962.1| Poly(A) polymerase [Escherichia coli KTE204]
gi|431011831|gb|ELD25905.1| Poly(A) polymerase [Escherichia coli KTE208]
gi|431014199|gb|ELD27908.1| Poly(A) polymerase [Escherichia coli KTE213]
gi|431046175|gb|ELD56294.1| Poly(A) polymerase [Escherichia coli KTE228]
gi|431065121|gb|ELD73898.1| Poly(A) polymerase [Escherichia coli KTE235]
gi|431165441|gb|ELE65794.1| Poly(A) polymerase [Escherichia coli KTE80]
gi|431176061|gb|ELE76047.1| Poly(A) polymerase [Escherichia coli KTE83]
gi|431205339|gb|ELF03832.1| Poly(A) polymerase [Escherichia coli KTE116]
gi|431320110|gb|ELG07758.1| Poly(A) polymerase [Escherichia coli KTE50]
gi|431321805|gb|ELG09405.1| Poly(A) polymerase [Escherichia coli KTE54]
gi|431392534|gb|ELG76107.1| Poly(A) polymerase [Escherichia coli KTE140]
gi|431420760|gb|ELH03036.1| Poly(A) polymerase [Escherichia coli KTE158]
gi|431448751|gb|ELH29464.1| Poly(A) polymerase [Escherichia coli KTE190]
gi|431483367|gb|ELH63059.1| Poly(A) polymerase [Escherichia coli KTE202]
gi|431538049|gb|ELI14154.1| Poly(A) polymerase [Escherichia coli KTE105]
gi|431576451|gb|ELI49138.1| Poly(A) polymerase [Escherichia coli KTE122]
gi|431589630|gb|ELI60844.1| Poly(A) polymerase [Escherichia coli KTE125]
gi|431593126|gb|ELI63690.1| Poly(A) polymerase [Escherichia coli KTE128]
gi|431683250|gb|ELJ48888.1| Poly(A) polymerase [Escherichia coli KTE177]
gi|431711681|gb|ELJ75994.1| Poly(A) polymerase [Escherichia coli KTE82]
gi|431727310|gb|ELJ91070.1| Poly(A) polymerase [Escherichia coli KTE95]
Length = 454
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYNLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|309787190|ref|ZP_07681802.1| poly(A) polymerase family protein [Shigella dysenteriae 1617]
gi|81239683|gb|ABB60393.1| poly(A) polymerase I [Shigella dysenteriae Sd197]
gi|308924768|gb|EFP70263.1| poly(A) polymerase family protein [Shigella dysenteriae 1617]
Length = 454
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIKQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|427400440|ref|ZP_18891678.1| poly(A) polymerase [Massilia timonae CCUG 45783]
gi|425720480|gb|EKU83401.1| poly(A) polymerase [Massilia timonae CCUG 45783]
Length = 463
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 115/217 (52%), Gaps = 8/217 (3%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V + L+ GF+A++VGG VRDLLL PKDFD+ T A +Q+++ F R+ IIGRRF I
Sbjct: 43 VTQTLQEAGFKAFVVGGAVRDLLLGVKPKDFDIATDATPEQVKKLFRRAFIIGRRFQIVH 102
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE--TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
V ++EV++F K+ +L +G D R RDFTIN++++
Sbjct: 103 VMFGQDLLEVTTFRGNGSDNAPKDEHGRVLRDNSFGPQHEDAAR------RDFTINAMYY 156
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
DP + DY GI D+R LR + + ED R+LR +R AA+LG +
Sbjct: 157 DPATQSVLDYHGGIEDIRAKTLRIIGMPEARYREDPVRMLRVVRFAAKLGFTIEPTTRAP 216
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLR 289
+ ++ I+ + +R+ E+ +L G A + + LR
Sbjct: 217 IPVMAPLIDNVPAARVFDEMLKLLLSGHALACLKELR 253
>gi|21242528|ref|NP_642110.1| polynucleotide adenylyltransferase [Xanthomonas axonopodis pv.
citri str. 306]
gi|381169527|ref|ZP_09878692.1| poly(A) polymerase [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|390989160|ref|ZP_10259460.1| poly(A) polymerase [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|21107981|gb|AAM36646.1| polynucleotide adenyltransferase [Xanthomonas axonopodis pv. citri
str. 306]
gi|372556194|emb|CCF66435.1| poly(A) polymerase [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|380690117|emb|CCG35179.1| poly(A) polymerase [Xanthomonas citri pv. mangiferaeindicae LMG
941]
Length = 455
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 135/289 (46%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A ++++ F
Sbjct: 33 ISRKDISPNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F G G + L+ YG E D +R
Sbjct: 93 CRLIGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIEDDAIR-- 150
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + L + ED R+LR +R+A
Sbjct: 151 ----RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPQLRYQEDPVRMLRAVRLA 206
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + L+ + +R+ E+ + G +S L RY LL L
Sbjct: 207 AKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGALF 266
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + A M++ N D V+ D P LL
Sbjct: 267 PESAAALKSNRSGALRA----MVLEGLRNTDARVANDEPVSPAFLFALL 311
>gi|21231215|ref|NP_637132.1| polynucleotide adenylyltransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768778|ref|YP_243540.1| polynucleotide adenylyltransferase [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991892|ref|YP_001903902.1| polynucleotide adenylyltransferase [Xanthomonas campestris pv.
campestris str. B100]
gi|21112860|gb|AAM41056.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66574110|gb|AAY49520.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
campestris str. 8004]
gi|167733652|emb|CAP51857.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
campestris]
Length = 455
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 136/289 (47%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T+A ++++ F
Sbjct: 33 ISRKDISPNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATSATPEEVKALFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F G G + L+ YG E D +R
Sbjct: 93 CRLIGRRFRLAHVVFGREIIEVATFRANIDDGSGDRELDNGRLVRDNVYGTIEDDAIR-- 150
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + L + ED R+LR +R+A
Sbjct: 151 ----RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLA 206
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + L+ + +R+ E+ + G +S L RY LL L
Sbjct: 207 AKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGALF 266
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + A M++ N D V+ D P LL
Sbjct: 267 PESAAALKSNRSGALRA----MVLEGLRNTDARVANDEPVSPAFLFALL 311
>gi|433181585|ref|ZP_20365897.1| Poly(A) polymerase [Escherichia coli KTE85]
gi|431712732|gb|ELJ77010.1| Poly(A) polymerase [Escherichia coli KTE85]
Length = 454
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFTL 336
>gi|331645278|ref|ZP_08346389.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli M605]
gi|344915212|ref|NP_706091.4| poly(A) polymerase [Shigella flexneri 2a str. 301]
gi|386617648|ref|YP_006137228.1| Poly(A) polymerase [Escherichia coli NA114]
gi|387828209|ref|YP_003348146.1| poly(A) polymerase [Escherichia coli SE15]
gi|417660772|ref|ZP_12310353.1| polyA polymerase [Escherichia coli AA86]
gi|417699928|ref|ZP_12349076.1| poly(A) polymerase family protein [Shigella flexneri K-218]
gi|417705634|ref|ZP_12354709.1| poly(A) polymerase family protein [Shigella flexneri VA-6]
gi|417720891|ref|ZP_12369746.1| poly(A) polymerase family protein [Shigella flexneri K-304]
gi|417726486|ref|ZP_12375236.1| poly(A) polymerase family protein [Shigella flexneri K-671]
gi|417731603|ref|ZP_12380278.1| poly(A) polymerase family protein [Shigella flexneri 2747-71]
gi|417736973|ref|ZP_12385586.1| poly(A) polymerase family protein [Shigella flexneri 4343-70]
gi|417741625|ref|ZP_12390182.1| poly(A) polymerase I [Shigella flexneri 2930-71]
gi|417826030|ref|ZP_12472613.1| poly(A) polymerase I [Shigella flexneri J1713]
gi|418252834|ref|ZP_12878301.1| poly(A) polymerase I [Shigella flexneri 6603-63]
gi|420318615|ref|ZP_14820475.1| poly(A) polymerase [Shigella flexneri 2850-71]
gi|420339612|ref|ZP_14841150.1| poly(A) polymerase [Shigella flexneri K-404]
gi|420369703|ref|ZP_14870386.1| poly(A) polymerase [Shigella flexneri 1235-66]
gi|432420264|ref|ZP_19662823.1| Poly(A) polymerase [Escherichia coli KTE178]
gi|432498440|ref|ZP_19740221.1| Poly(A) polymerase [Escherichia coli KTE216]
gi|432557171|ref|ZP_19793865.1| Poly(A) polymerase [Escherichia coli KTE49]
gi|432692828|ref|ZP_19928048.1| Poly(A) polymerase [Escherichia coli KTE162]
gi|432708986|ref|ZP_19944055.1| Poly(A) polymerase [Escherichia coli KTE6]
gi|432917128|ref|ZP_20121799.1| Poly(A) polymerase [Escherichia coli KTE173]
gi|432924423|ref|ZP_20126710.1| Poly(A) polymerase [Escherichia coli KTE175]
gi|432979528|ref|ZP_20168316.1| Poly(A) polymerase [Escherichia coli KTE211]
gi|433095021|ref|ZP_20281247.1| Poly(A) polymerase [Escherichia coli KTE139]
gi|433104324|ref|ZP_20290349.1| Poly(A) polymerase [Escherichia coli KTE148]
gi|30039945|gb|AAP15679.1| poly(A) polymerase I [Shigella flexneri 2a str. 2457T]
gi|56383162|gb|AAN41798.2| poly(A) polymerase I [Shigella flexneri 2a str. 301]
gi|281177366|dbj|BAI53696.1| poly(A) polymerase [Escherichia coli SE15]
gi|330909990|gb|EGH38500.1| polyA polymerase [Escherichia coli AA86]
gi|331046035|gb|EGI18154.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli M605]
gi|332762142|gb|EGJ92411.1| poly(A) polymerase family protein [Shigella flexneri 4343-70]
gi|332762374|gb|EGJ92641.1| poly(A) polymerase family protein [Shigella flexneri 2747-71]
gi|332764987|gb|EGJ95215.1| poly(A) polymerase family protein [Shigella flexneri K-671]
gi|332768930|gb|EGJ99109.1| poly(A) polymerase I [Shigella flexneri 2930-71]
gi|333009186|gb|EGK28642.1| poly(A) polymerase family protein [Shigella flexneri K-218]
gi|333010635|gb|EGK30068.1| poly(A) polymerase family protein [Shigella flexneri VA-6]
gi|333022260|gb|EGK41498.1| poly(A) polymerase family protein [Shigella flexneri K-304]
gi|333968149|gb|AEG34954.1| Poly(A) polymerase [Escherichia coli NA114]
gi|335578410|gb|EGM63626.1| poly(A) polymerase I [Shigella flexneri J1713]
gi|391255458|gb|EIQ14606.1| poly(A) polymerase [Shigella flexneri 2850-71]
gi|391275514|gb|EIQ34303.1| poly(A) polymerase [Shigella flexneri K-404]
gi|391320987|gb|EIQ77752.1| poly(A) polymerase [Shigella flexneri 1235-66]
gi|397902102|gb|EJL18434.1| poly(A) polymerase I [Shigella flexneri 6603-63]
gi|430947852|gb|ELC67540.1| Poly(A) polymerase [Escherichia coli KTE178]
gi|431032885|gb|ELD45591.1| Poly(A) polymerase [Escherichia coli KTE216]
gi|431094789|gb|ELE00418.1| Poly(A) polymerase [Escherichia coli KTE49]
gi|431237848|gb|ELF32830.1| Poly(A) polymerase [Escherichia coli KTE162]
gi|431252707|gb|ELF46221.1| Poly(A) polymerase [Escherichia coli KTE6]
gi|431448413|gb|ELH29130.1| Poly(A) polymerase [Escherichia coli KTE173]
gi|431450064|gb|ELH30556.1| Poly(A) polymerase [Escherichia coli KTE175]
gi|431498478|gb|ELH77664.1| Poly(A) polymerase [Escherichia coli KTE211]
gi|431620759|gb|ELI89586.1| Poly(A) polymerase [Escherichia coli KTE139]
gi|431634768|gb|ELJ02989.1| Poly(A) polymerase [Escherichia coli KTE148]
Length = 454
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|227112948|ref|ZP_03826604.1| poly(A) polymerase I [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 452
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 149/315 (47%), Gaps = 26/315 (8%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+ I + + VL L G++AYLVGG VRDLLL + PKDFD+ T A Q+R+ F
Sbjct: 21 ISRSDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA-----------KHGEGKETVLLSQIPYGCDE 171
++GRRF + + VIEV++F + + +LL +G E
Sbjct: 81 CRLVGRRFRLAHIMFGPEVIEVATFRGHHEQHQEQQEIKNSSQQAQSGMLLRDNIFGSVE 140
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF+INSL++ + DY +G++DLR +R + + ED R+
Sbjct: 141 EDAQR------RDFSINSLYYSISDFSVRDYTDGLNDLRQGVIRMIGDPETRYREDPVRM 194
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L ++ + + L+S + + +R+ E +L G + +L Y
Sbjct: 195 LRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGYGYPTYKMLCEY 254
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD---RPA---DYTLWVGL 345
L + L P + Y G T E M+ ++ N D+ + D PA LW L
Sbjct: 255 QLFQPLFPLLSRYFTPN-GDSTLER--MVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPL 311
Query: 346 LSFHQALVSDPQDAF 360
+ Q L + A+
Sbjct: 312 VEHAQKLAQESGLAY 326
>gi|51588364|emb|CAH19972.1| poly(A) polymerase I [Yersinia pseudotuberculosis IP 32953]
Length = 437
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 154/323 (47%), Gaps = 34/323 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L G++AYLVGG VRDLLL R PKDFD+ T+A +Q+R+ F
Sbjct: 11 ISRRDISDNALKVLYRLNKSGYEAYLVGGGVRDLLLGRKPKDFDITTSATPEQVRKLFRN 70
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F + + +++ +LL +G E
Sbjct: 71 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIE 130
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 131 DDAQR------RDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRM 184
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L +S + + L+S + + +R+ E +L G + L Y
Sbjct: 185 LRAVRFAAKLDMSISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 244
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLWV 343
L + L P A +Q ++PM +L+++ N D + D+ PA LW
Sbjct: 245 QLFQPLFPLIARNFTEQ-----HDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWY 299
Query: 344 GLLSFHQALVSDP----QDAFVV 362
L+ Q L + DAF +
Sbjct: 300 PLIEHAQKLTQESGLAYYDAFAL 322
>gi|189220183|ref|YP_001940823.1| tRNA nucleotidyltransferase/poly(A) polymerase [Methylacidiphilum
infernorum V4]
gi|189187041|gb|ACD84226.1| tRNA nucleotidyltransferase/poly(A) polymerase [Methylacidiphilum
infernorum V4]
Length = 443
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR--SEIIGRRFPI 132
+++IL+ GF A+ GGCVRD+LL++ P D D+ T+A Q++ F S +IG+ F +
Sbjct: 8 IVRILQKAGFTAFFAGGCVRDILLKKEPHDIDIATSATPDQVQNLFKEKASGLIGKSFGV 67
Query: 133 CRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
RV EV++F T G+ + + + D +R RDFTIN +F+
Sbjct: 68 IRVKSGAHFFEVATFRTDIGSQGGRWP---KAVQFSTPKEDALR------RDFTINGIFY 118
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
DP I DY G D+ ++R + + F ED R+LR +R A RLG S + A
Sbjct: 119 DPLTGTIIDYVGGSEDIEKKRIRAIGDPKIRFEEDHLRLLRAIRFAVRLGFSIEEKTWEA 178
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ S + I ++ RI EL+ + + + LL + LL+ +LP
Sbjct: 179 IQSSAHKITQISPERIREELDKIFTGPDPAKGLELLDQSGLLRFILP 225
>gi|416895490|ref|ZP_11925391.1| poly(A) polymerase family protein [Escherichia coli STEC_7v]
gi|417112165|ref|ZP_11964288.1| polynucleotide adenylyltransferase [Escherichia coli 1.2741]
gi|422802541|ref|ZP_16851034.1| poly(A) polymerase [Escherichia coli M863]
gi|323964964|gb|EGB60430.1| poly(A) polymerase [Escherichia coli M863]
gi|327255121|gb|EGE66724.1| poly(A) polymerase family protein [Escherichia coli STEC_7v]
gi|386142949|gb|EIG84085.1| polynucleotide adenylyltransferase [Escherichia coli 1.2741]
Length = 454
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|386607235|ref|YP_006113535.1| poly(A) polymerase I [Escherichia coli UM146]
gi|432572038|ref|ZP_19808532.1| Poly(A) polymerase [Escherichia coli KTE55]
gi|307629719|gb|ADN74023.1| poly(A) polymerase I [Escherichia coli UM146]
gi|431111765|gb|ELE15656.1| Poly(A) polymerase [Escherichia coli KTE55]
Length = 454
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|326317987|ref|YP_004235659.1| poly(A) polymerase [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323374823|gb|ADX47092.1| poly(A) polymerase [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 530
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 136/262 (51%), Gaps = 23/262 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V++ L+ G++AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 36 GIDPELVDRRATEVVRTLQQAGYEAYIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFR 95
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKE---TVLLSQIPYGC 169
R+ IIG+RF I VH +G VIEVS+F A+ G E L+ + +
Sbjct: 96 RAFIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLDNAAAEQVSGNEKTSKAALAGMQHAV 155
Query: 170 DEIDLVR----W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D V W ++ RDFTIN++++DP + DY GI D R +R +
Sbjct: 156 DASGRVLRDNVWGPQDEDATRRDFTINAMYYDPATQVVVDYHKGIQDARKKVIRMIGDPA 215
Query: 222 LSFTEDCARILRGLRIAARL-GLSFCKDIDTAMHSLSSS--IERLDKSRIMMELNYMLSY 278
+ ED RI+R +R AA+L G+ F + TA + S + + +SR+ E+ +L
Sbjct: 216 TRYREDPVRIIRAVRFAAKLAGVGFTIEPKTAAPLVQSQTLLADVPQSRMFDEMLKLLQT 275
Query: 279 GAAESSICLLRRYNLLKILLPF 300
G A ++I L++ L + P
Sbjct: 276 GHAIATIEQLKKLGLSTGIYPL 297
>gi|300919704|ref|ZP_07136192.1| polynucleotide adenylyltransferase [Escherichia coli MS 115-1]
gi|432532356|ref|ZP_19769364.1| Poly(A) polymerase [Escherichia coli KTE234]
gi|300413238|gb|EFJ96548.1| polynucleotide adenylyltransferase [Escherichia coli MS 115-1]
gi|431064837|gb|ELD73695.1| Poly(A) polymerase [Escherichia coli KTE234]
Length = 454
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNISDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|238785058|ref|ZP_04629054.1| Poly(A) polymerase [Yersinia bercovieri ATCC 43970]
gi|238714030|gb|EEQ06046.1| Poly(A) polymerase [Yersinia bercovieri ATCC 43970]
Length = 473
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 154/323 (47%), Gaps = 34/323 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L G++AYLVGG VRDLLL + PKDFD+ T+A +Q+R+ F
Sbjct: 44 ISRREISDNALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRN 103
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F + + +++ +LL +G E
Sbjct: 104 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQALNGMLLRDNIFGTIE 163
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 164 DDAQR------RDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRM 217
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L ++ + + L+S + + +R+ E +L G + L Y
Sbjct: 218 LRAVRFAAKLDMTISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 277
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLWV 343
L + L P A +Q ++PM +L+++ N D + D+ PA LW
Sbjct: 278 QLFQPLFPLIARNFTEQ-----HDSPMERILVQVLKNTDHRLHNDQRVNPAFLFAAMLWY 332
Query: 344 GLLSFHQALVSDP----QDAFVV 362
L+ Q L + DAF +
Sbjct: 333 PLIEHAQKLTQESGLAYYDAFAL 355
>gi|432390038|ref|ZP_19632904.1| Poly(A) polymerase [Escherichia coli KTE21]
gi|432717157|ref|ZP_19952161.1| Poly(A) polymerase [Escherichia coli KTE9]
gi|430923651|gb|ELC44386.1| Poly(A) polymerase [Escherichia coli KTE21]
gi|431267278|gb|ELF58796.1| Poly(A) polymerase [Escherichia coli KTE9]
Length = 454
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNISDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|421775154|ref|ZP_16211764.1| poly(A) polymerase I [Escherichia coli AD30]
gi|408459586|gb|EKJ83367.1| poly(A) polymerase I [Escherichia coli AD30]
Length = 454
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 27/304 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNISDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDRPADYTLWVGLLSF 348
Y+L + L P Y + ++PM ++ ++ N D + D + + +
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 349 HQAL 352
H L
Sbjct: 313 HPLL 316
>gi|194439099|ref|ZP_03071181.1| poly(A) polymerase [Escherichia coli 101-1]
gi|254160263|ref|YP_003043371.1| poly(A) polymerase I [Escherichia coli B str. REL606]
gi|254287066|ref|YP_003052814.1| poly(A) polymerase I [Escherichia coli BL21(DE3)]
gi|297520614|ref|ZP_06939000.1| poly(A) polymerase I [Escherichia coli OP50]
gi|300931725|ref|ZP_07147029.1| polynucleotide adenylyltransferase [Escherichia coli MS 187-1]
gi|312970241|ref|ZP_07784423.1| poly(A) polymerase family protein [Escherichia coli 1827-70]
gi|386612307|ref|YP_006131973.1| poly(A) polymerase PcnB [Escherichia coli UMNK88]
gi|422788379|ref|ZP_16841116.1| poly(A) polymerase [Escherichia coli H489]
gi|425286656|ref|ZP_18677610.1| poly(A) polymerase I [Escherichia coli 3006]
gi|432483785|ref|ZP_19725714.1| Poly(A) polymerase [Escherichia coli KTE212]
gi|432529444|ref|ZP_19766502.1| Poly(A) polymerase [Escherichia coli KTE233]
gi|432578856|ref|ZP_19815292.1| Poly(A) polymerase [Escherichia coli KTE56]
gi|432668965|ref|ZP_19904520.1| Poly(A) polymerase [Escherichia coli KTE119]
gi|433171909|ref|ZP_20356479.1| Poly(A) polymerase [Escherichia coli KTE232]
gi|442597841|ref|ZP_21015619.1| Poly(A) polymerase [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|194421918|gb|EDX37923.1| poly(A) polymerase [Escherichia coli 101-1]
gi|253972164|gb|ACT37835.1| poly(A) polymerase I [Escherichia coli B str. REL606]
gi|253976373|gb|ACT42043.1| poly(A) polymerase I [Escherichia coli BL21(DE3)]
gi|300460488|gb|EFK23981.1| polynucleotide adenylyltransferase [Escherichia coli MS 187-1]
gi|310337739|gb|EFQ02850.1| poly(A) polymerase family protein [Escherichia coli 1827-70]
gi|323960087|gb|EGB55733.1| poly(A) polymerase [Escherichia coli H489]
gi|332341476|gb|AEE54810.1| poly(A) polymerase PcnB [Escherichia coli UMNK88]
gi|408219767|gb|EKI43885.1| poly(A) polymerase I [Escherichia coli 3006]
gi|431020010|gb|ELD33401.1| Poly(A) polymerase [Escherichia coli KTE212]
gi|431057782|gb|ELD67200.1| Poly(A) polymerase [Escherichia coli KTE233]
gi|431109812|gb|ELE13762.1| Poly(A) polymerase [Escherichia coli KTE56]
gi|431214670|gb|ELF12424.1| Poly(A) polymerase [Escherichia coli KTE119]
gi|431697213|gb|ELJ62358.1| Poly(A) polymerase [Escherichia coli KTE232]
gi|441653506|emb|CCQ03835.1| Poly(A) polymerase [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
Length = 454
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNISDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|418518583|ref|ZP_13084724.1| polynucleotide adenylyltransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410703137|gb|EKQ61633.1| polynucleotide adenylyltransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 455
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 135/289 (46%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A ++++ F
Sbjct: 33 ISRKDISPNALRVLYRLRESGFGAYLVGGAVRDLLVGGHPKDFDVATDATPEEVKALFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F G G + L+ YG E D +R
Sbjct: 93 CRLIGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGTIEDDAIR-- 150
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + L + ED R+LR +R+A
Sbjct: 151 ----RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPQLRYQEDPVRMLRAVRLA 206
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + L+ + +R+ E+ + G +S L RY LL L
Sbjct: 207 AKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLLGALF 266
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + A M++ N D V+ D P LL
Sbjct: 267 PESAAALKSNRSGALRA----MVLEGLRNTDARVANDEPVSPAFLFALL 311
>gi|157159375|ref|YP_001461313.1| poly(A) polymerase [Escherichia coli E24377A]
gi|157159609|ref|YP_001456927.1| poly(A) polymerase I [Escherichia coli HS]
gi|260853354|ref|YP_003227245.1| poly(A) polymerase [Escherichia coli O26:H11 str. 11368]
gi|260866293|ref|YP_003232695.1| poly(A) polymerase [Escherichia coli O111:H- str. 11128]
gi|300825359|ref|ZP_07105437.1| polynucleotide adenylyltransferase [Escherichia coli MS 119-7]
gi|300905560|ref|ZP_07123319.1| polynucleotide adenylyltransferase [Escherichia coli MS 84-1]
gi|300923068|ref|ZP_07139133.1| polynucleotide adenylyltransferase [Escherichia coli MS 182-1]
gi|301303752|ref|ZP_07209872.1| polynucleotide adenylyltransferase [Escherichia coli MS 124-1]
gi|301330067|ref|ZP_07222743.1| polynucleotide adenylyltransferase [Escherichia coli MS 78-1]
gi|331666385|ref|ZP_08367266.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA271]
gi|331680723|ref|ZP_08381382.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H591]
gi|415780928|ref|ZP_11490698.1| poly(A) polymerase family protein [Escherichia coli EPECa14]
gi|415823954|ref|ZP_11512329.1| poly(A) polymerase family protein [Escherichia coli OK1180]
gi|415864341|ref|ZP_11537435.1| polynucleotide adenylyltransferase [Escherichia coli MS 85-1]
gi|417126537|ref|ZP_11974091.1| polynucleotide adenylyltransferase [Escherichia coli 97.0246]
gi|417132215|ref|ZP_11977000.1| polynucleotide adenylyltransferase [Escherichia coli 5.0588]
gi|417157145|ref|ZP_11994769.1| polynucleotide adenylyltransferase [Escherichia coli 96.0497]
gi|417160235|ref|ZP_11997154.1| polynucleotide adenylyltransferase [Escherichia coli 99.0741]
gi|417191042|ref|ZP_12013638.1| polynucleotide adenylyltransferase [Escherichia coli 4.0522]
gi|417216895|ref|ZP_12023567.1| polynucleotide adenylyltransferase [Escherichia coli JB1-95]
gi|417269278|ref|ZP_12056638.1| polynucleotide adenylyltransferase [Escherichia coli 3.3884]
gi|417295623|ref|ZP_12082876.1| polynucleotide adenylyltransferase [Escherichia coli 900105 (10e)]
gi|417584211|ref|ZP_12235005.1| poly(A) polymerase family protein [Escherichia coli STEC_B2F1]
gi|417589762|ref|ZP_12240483.1| poly(A) polymerase family protein [Escherichia coli 2534-86]
gi|417637405|ref|ZP_12287589.1| poly(A) polymerase family protein [Escherichia coli TX1999]
gi|417864335|ref|ZP_12509381.1| hypothetical protein C22711_1268 [Escherichia coli O104:H4 str.
C227-11]
gi|418039574|ref|ZP_12677833.1| poly(A) polymerase I [Escherichia coli W26]
gi|419168112|ref|ZP_13712513.1| poly(A) polymerase [Escherichia coli DEC7A]
gi|419173513|ref|ZP_13717375.1| poly(A) polymerase I [Escherichia coli DEC7B]
gi|419179162|ref|ZP_13722789.1| poly(A) polymerase I [Escherichia coli DEC7C]
gi|419184622|ref|ZP_13728148.1| poly(A) polymerase I [Escherichia coli DEC7D]
gi|419189889|ref|ZP_13733362.1| poly(A) polymerase [Escherichia coli DEC7E]
gi|419195100|ref|ZP_13738515.1| poly(A) polymerase [Escherichia coli DEC8A]
gi|419201231|ref|ZP_13744463.1| poly(A) polymerase I [Escherichia coli DEC8B]
gi|419207093|ref|ZP_13750224.1| poly(A) polymerase I [Escherichia coli DEC8C]
gi|419213516|ref|ZP_13756551.1| poly(A) polymerase I [Escherichia coli DEC8D]
gi|419219355|ref|ZP_13762316.1| poly(A) polymerase I [Escherichia coli DEC8E]
gi|419224787|ref|ZP_13767682.1| poly(A) polymerase I [Escherichia coli DEC9A]
gi|419230625|ref|ZP_13773421.1| poly(A) polymerase I [Escherichia coli DEC9B]
gi|419235953|ref|ZP_13778706.1| poly(A) polymerase I [Escherichia coli DEC9C]
gi|419241540|ref|ZP_13784192.1| poly(A) polymerase I [Escherichia coli DEC9D]
gi|419246945|ref|ZP_13789564.1| poly(A) polymerase I [Escherichia coli DEC9E]
gi|419252779|ref|ZP_13795331.1| poly(A) polymerase I [Escherichia coli DEC10A]
gi|419258723|ref|ZP_13801187.1| poly(A) polymerase I [Escherichia coli DEC10B]
gi|419264467|ref|ZP_13806857.1| poly(A) polymerase I [Escherichia coli DEC10C]
gi|419270325|ref|ZP_13812660.1| poly(A) polymerase I [Escherichia coli DEC10D]
gi|419281773|ref|ZP_13823998.1| poly(A) polymerase I [Escherichia coli DEC10F]
gi|419343810|ref|ZP_13885196.1| poly(A) polymerase I [Escherichia coli DEC13A]
gi|419348230|ref|ZP_13889586.1| poly(A) polymerase I [Escherichia coli DEC13B]
gi|419353132|ref|ZP_13894421.1| poly(A) polymerase I [Escherichia coli DEC13C]
gi|419358477|ref|ZP_13899710.1| poly(A) polymerase I [Escherichia coli DEC13D]
gi|419363462|ref|ZP_13904646.1| poly(A) polymerase I [Escherichia coli DEC13E]
gi|419389556|ref|ZP_13930400.1| poly(A) polymerase I [Escherichia coli DEC15A]
gi|419400053|ref|ZP_13940807.1| poly(A) polymerase I [Escherichia coli DEC15B]
gi|419405295|ref|ZP_13946006.1| poly(A) polymerase I [Escherichia coli DEC15C]
gi|419410452|ref|ZP_13951131.1| poly(A) polymerase I [Escherichia coli DEC15D]
gi|419410770|ref|ZP_13951447.1| poly(A) polymerase I [Escherichia coli DEC15E]
gi|420383780|ref|ZP_14883172.1| poly(A) polymerase [Escherichia coli EPECa12]
gi|422957515|ref|ZP_16969729.1| Poly(A) polymerase [Escherichia coli H494]
gi|422990847|ref|ZP_16981618.1| Poly(A) polymerase [Escherichia coli O104:H4 str. C227-11]
gi|422992787|ref|ZP_16983551.1| Poly(A) polymerase [Escherichia coli O104:H4 str. C236-11]
gi|422997996|ref|ZP_16988752.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 09-7901]
gi|423006480|ref|ZP_16997224.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 04-8351]
gi|423008102|ref|ZP_16998840.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-3677]
gi|423022288|ref|ZP_17012991.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4404]
gi|423027443|ref|ZP_17018136.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4522]
gi|423033280|ref|ZP_17023964.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4623]
gi|423036146|ref|ZP_17026820.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423041266|ref|ZP_17031933.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423047952|ref|ZP_17038609.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423056490|ref|ZP_17045295.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423058501|ref|ZP_17047297.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423709865|ref|ZP_17684219.1| Poly(A) polymerase [Escherichia coli B799]
gi|425376882|ref|ZP_18761314.1| poly(A) polymerase I [Escherichia coli EC1865]
gi|427803217|ref|ZP_18970284.1| poly(A) polymerase I [Escherichia coli chi7122]
gi|427807822|ref|ZP_18974887.1| poly(A) polymerase I [Escherichia coli]
gi|429722345|ref|ZP_19257244.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429774423|ref|ZP_19306427.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02030]
gi|429779683|ref|ZP_19311639.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02033-1]
gi|429783738|ref|ZP_19315652.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02092]
gi|429789076|ref|ZP_19320952.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02093]
gi|429795306|ref|ZP_19327133.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02281]
gi|429801232|ref|ZP_19333011.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02318]
gi|429804864|ref|ZP_19336612.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02913]
gi|429809675|ref|ZP_19341378.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-03439]
gi|429815435|ref|ZP_19347095.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-04080]
gi|429820646|ref|ZP_19352261.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-03943]
gi|429906697|ref|ZP_19372667.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429910892|ref|ZP_19376849.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-9941]
gi|429916732|ref|ZP_19382673.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429921770|ref|ZP_19387692.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429927587|ref|ZP_19393494.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429931520|ref|ZP_19397416.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429938063|ref|ZP_19403944.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429938778|ref|ZP_19404652.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429946419|ref|ZP_19412275.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429949067|ref|ZP_19414915.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429957334|ref|ZP_19423163.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec12-0466]
gi|432379760|ref|ZP_19622735.1| Poly(A) polymerase [Escherichia coli KTE12]
gi|432763427|ref|ZP_19997884.1| Poly(A) polymerase [Escherichia coli KTE48]
gi|432812294|ref|ZP_20046144.1| Poly(A) polymerase [Escherichia coli KTE101]
gi|432833245|ref|ZP_20066794.1| Poly(A) polymerase [Escherichia coli KTE136]
gi|432879399|ref|ZP_20096426.1| Poly(A) polymerase [Escherichia coli KTE154]
gi|433090491|ref|ZP_20276804.1| Poly(A) polymerase [Escherichia coli KTE138]
gi|433128431|ref|ZP_20313919.1| Poly(A) polymerase [Escherichia coli KTE163]
gi|433133332|ref|ZP_20318718.1| Poly(A) polymerase [Escherichia coli KTE166]
gi|157065289|gb|ABV04544.1| poly(A) polymerase [Escherichia coli HS]
gi|157081405|gb|ABV21113.1| poly(A) polymerase [Escherichia coli E24377A]
gi|257752003|dbj|BAI23505.1| poly(A) polymerase I [Escherichia coli O26:H11 str. 11368]
gi|257762649|dbj|BAI34144.1| poly(A) polymerase I [Escherichia coli O111:H- str. 11128]
gi|300402593|gb|EFJ86131.1| polynucleotide adenylyltransferase [Escherichia coli MS 84-1]
gi|300420630|gb|EFK03941.1| polynucleotide adenylyltransferase [Escherichia coli MS 182-1]
gi|300522172|gb|EFK43241.1| polynucleotide adenylyltransferase [Escherichia coli MS 119-7]
gi|300840879|gb|EFK68639.1| polynucleotide adenylyltransferase [Escherichia coli MS 124-1]
gi|300843913|gb|EFK71673.1| polynucleotide adenylyltransferase [Escherichia coli MS 78-1]
gi|315254944|gb|EFU34912.1| polynucleotide adenylyltransferase [Escherichia coli MS 85-1]
gi|323157782|gb|EFZ43885.1| poly(A) polymerase family protein [Escherichia coli EPECa14]
gi|323176455|gb|EFZ62047.1| poly(A) polymerase family protein [Escherichia coli OK1180]
gi|331066596|gb|EGI38473.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA271]
gi|331072186|gb|EGI43522.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H591]
gi|341917624|gb|EGT67239.1| hypothetical protein C22711_1268 [Escherichia coli O104:H4 str.
C227-11]
gi|345332442|gb|EGW64900.1| poly(A) polymerase family protein [Escherichia coli STEC_B2F1]
gi|345346120|gb|EGW78456.1| poly(A) polymerase family protein [Escherichia coli 2534-86]
gi|345395919|gb|EGX25654.1| poly(A) polymerase family protein [Escherichia coli TX1999]
gi|354859346|gb|EHF19794.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 04-8351]
gi|354859833|gb|EHF20280.1| Poly(A) polymerase [Escherichia coli O104:H4 str. C227-11]
gi|354866530|gb|EHF26953.1| Poly(A) polymerase [Escherichia coli O104:H4 str. C236-11]
gi|354876864|gb|EHF37224.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 09-7901]
gi|354881873|gb|EHF42201.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4404]
gi|354884971|gb|EHF45282.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-3677]
gi|354886418|gb|EHF46705.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4522]
gi|354889934|gb|EHF50181.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4623]
gi|354902134|gb|EHF62256.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354905460|gb|EHF65543.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354907967|gb|EHF68023.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354910238|gb|EHF70266.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C4]
gi|354918439|gb|EHF78395.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C5]
gi|371597985|gb|EHN86801.1| Poly(A) polymerase [Escherichia coli H494]
gi|378019394|gb|EHV82225.1| poly(A) polymerase [Escherichia coli DEC7A]
gi|378028709|gb|EHV91326.1| poly(A) polymerase I [Escherichia coli DEC7C]
gi|378034249|gb|EHV96815.1| poly(A) polymerase I [Escherichia coli DEC7D]
gi|378039004|gb|EHW01509.1| poly(A) polymerase I [Escherichia coli DEC7B]
gi|378043337|gb|EHW05773.1| poly(A) polymerase [Escherichia coli DEC7E]
gi|378054614|gb|EHW16892.1| poly(A) polymerase [Escherichia coli DEC8A]
gi|378058138|gb|EHW20358.1| poly(A) polymerase I [Escherichia coli DEC8B]
gi|378064635|gb|EHW26795.1| poly(A) polymerase I [Escherichia coli DEC8C]
gi|378070131|gb|EHW32214.1| poly(A) polymerase I [Escherichia coli DEC8D]
gi|378073861|gb|EHW35906.1| poly(A) polymerase I [Escherichia coli DEC8E]
gi|378083187|gb|EHW45122.1| poly(A) polymerase I [Escherichia coli DEC9A]
gi|378083492|gb|EHW45424.1| poly(A) polymerase I [Escherichia coli DEC9B]
gi|378091361|gb|EHW53192.1| poly(A) polymerase I [Escherichia coli DEC9C]
gi|378095845|gb|EHW57627.1| poly(A) polymerase I [Escherichia coli DEC9D]
gi|378103961|gb|EHW65623.1| poly(A) polymerase I [Escherichia coli DEC9E]
gi|378108883|gb|EHW70495.1| poly(A) polymerase I [Escherichia coli DEC10A]
gi|378118745|gb|EHW80247.1| poly(A) polymerase I [Escherichia coli DEC10B]
gi|378120081|gb|EHW81562.1| poly(A) polymerase I [Escherichia coli DEC10C]
gi|378122069|gb|EHW83513.1| poly(A) polymerase I [Escherichia coli DEC10D]
gi|378141373|gb|EHX02590.1| poly(A) polymerase I [Escherichia coli DEC10F]
gi|378190814|gb|EHX51392.1| poly(A) polymerase I [Escherichia coli DEC13A]
gi|378206009|gb|EHX66416.1| poly(A) polymerase I [Escherichia coli DEC13B]
gi|378209084|gb|EHX69460.1| poly(A) polymerase I [Escherichia coli DEC13D]
gi|378209767|gb|EHX70135.1| poly(A) polymerase I [Escherichia coli DEC13C]
gi|378220319|gb|EHX80580.1| poly(A) polymerase I [Escherichia coli DEC13E]
gi|378239203|gb|EHX99197.1| poly(A) polymerase I [Escherichia coli DEC15B]
gi|378242050|gb|EHY02016.1| poly(A) polymerase I [Escherichia coli DEC15C]
gi|378246404|gb|EHY06331.1| poly(A) polymerase I [Escherichia coli DEC15A]
gi|378249917|gb|EHY09826.1| poly(A) polymerase I [Escherichia coli DEC15D]
gi|378261780|gb|EHY21571.1| poly(A) polymerase I [Escherichia coli DEC15E]
gi|383477438|gb|EID69358.1| poly(A) polymerase I [Escherichia coli W26]
gi|385705083|gb|EIG42150.1| Poly(A) polymerase [Escherichia coli B799]
gi|386144787|gb|EIG91251.1| polynucleotide adenylyltransferase [Escherichia coli 97.0246]
gi|386150069|gb|EIH01358.1| polynucleotide adenylyltransferase [Escherichia coli 5.0588]
gi|386165895|gb|EIH32415.1| polynucleotide adenylyltransferase [Escherichia coli 96.0497]
gi|386174726|gb|EIH46719.1| polynucleotide adenylyltransferase [Escherichia coli 99.0741]
gi|386192014|gb|EIH80755.1| polynucleotide adenylyltransferase [Escherichia coli 4.0522]
gi|386193757|gb|EIH88041.1| polynucleotide adenylyltransferase [Escherichia coli JB1-95]
gi|386228083|gb|EII55439.1| polynucleotide adenylyltransferase [Escherichia coli 3.3884]
gi|386261242|gb|EIJ16710.1| polynucleotide adenylyltransferase [Escherichia coli 900105 (10e)]
gi|391310129|gb|EIQ67785.1| poly(A) polymerase [Escherichia coli EPECa12]
gi|408311083|gb|EKJ28095.1| poly(A) polymerase I [Escherichia coli EC1865]
gi|412961399|emb|CCK45304.1| poly(A) polymerase I [Escherichia coli chi7122]
gi|412968001|emb|CCJ42614.1| poly(A) polymerase I [Escherichia coli]
gi|429352473|gb|EKY89188.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02030]
gi|429353529|gb|EKY90237.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02033-1]
gi|429354027|gb|EKY90732.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02092]
gi|429367517|gb|EKZ04111.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02093]
gi|429368669|gb|EKZ05255.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02281]
gi|429370895|gb|EKZ07458.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02318]
gi|429383269|gb|EKZ19730.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02913]
gi|429386118|gb|EKZ22568.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-03439]
gi|429387031|gb|EKZ23476.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-03943]
gi|429398291|gb|EKZ34634.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-04080]
gi|429400007|gb|EKZ36325.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429400341|gb|EKZ36658.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429411432|gb|EKZ47642.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429413004|gb|EKZ49194.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429420056|gb|EKZ56190.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429423918|gb|EKZ60025.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429430075|gb|EKZ66142.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429436017|gb|EKZ72034.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429443201|gb|EKZ79154.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429445623|gb|EKZ81564.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429452092|gb|EKZ87979.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec12-0466]
gi|429456943|gb|EKZ92786.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-9941]
gi|430894369|gb|ELC16658.1| Poly(A) polymerase [Escherichia coli KTE12]
gi|431314502|gb|ELG02454.1| Poly(A) polymerase [Escherichia coli KTE48]
gi|431358397|gb|ELG45055.1| Poly(A) polymerase [Escherichia coli KTE101]
gi|431389344|gb|ELG73057.1| Poly(A) polymerase [Escherichia coli KTE136]
gi|431415197|gb|ELG97747.1| Poly(A) polymerase [Escherichia coli KTE154]
gi|431616264|gb|ELI85331.1| Poly(A) polymerase [Escherichia coli KTE138]
gi|431652325|gb|ELJ19479.1| Poly(A) polymerase [Escherichia coli KTE163]
gi|431663902|gb|ELJ30654.1| Poly(A) polymerase [Escherichia coli KTE166]
Length = 454
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|212711310|ref|ZP_03319438.1| hypothetical protein PROVALCAL_02382 [Providencia alcalifaciens DSM
30120]
gi|212686039|gb|EEB45567.1| hypothetical protein PROVALCAL_02382 [Providencia alcalifaciens DSM
30120]
Length = 502
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 129/249 (51%), Gaps = 14/249 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L G++AYLVGG VRDLLL + PKDFD+ T A +QIR+ F
Sbjct: 75 ISRDDISDNALKVLYRLNKNGYEAYLVGGGVRDLLLGQKPKDFDITTNATPEQIRKLFRN 134
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF------ETVAKH--GEGKETVLLSQIPYGCDEIDL 174
++GRRF + + +IEV++F E K+ + + +LL +G E D
Sbjct: 135 CRLVGRRFRLAHIMFGPEIIEVATFRGHHDQEVDDKNLSSQAQNGMLLRDNIFGSIEEDA 194
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
+R RDFT+NSL+++ + DY NG+ DL+ +R + + ED R++R
Sbjct: 195 IR------RDFTVNSLYYNIDDFSVRDYVNGLQDLKDGVIRLIGDPETRYREDPVRMIRA 248
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + +H L+ + + +R+ E +L G ++ +L +Y+L
Sbjct: 249 VRFACKLNMRIELKTAEPIHRLAPLLGEIPSARLFEESLKLLQAGYGYATYKMLNQYHLF 308
Query: 295 KILLPFHAA 303
+ L P A+
Sbjct: 309 EQLFPVIAS 317
>gi|293408235|ref|ZP_06652075.1| pcnB [Escherichia coli B354]
gi|301026010|ref|ZP_07189491.1| polynucleotide adenylyltransferase [Escherichia coli MS 69-1]
gi|331671653|ref|ZP_08372451.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA280]
gi|417143002|ref|ZP_11985383.1| polynucleotide adenylyltransferase [Escherichia coli 97.0259]
gi|417306672|ref|ZP_12093560.1| Poly(A) polymerase [Escherichia coli PCN033]
gi|419918966|ref|ZP_14437138.1| poly(A) polymerase I [Escherichia coli KD2]
gi|422333305|ref|ZP_16414316.1| Poly(A) polymerase [Escherichia coli 4_1_47FAA]
gi|422971453|ref|ZP_16974728.1| Poly(A) polymerase [Escherichia coli TA124]
gi|432546461|ref|ZP_19783273.1| Poly(A) polymerase [Escherichia coli KTE236]
gi|432546866|ref|ZP_19783666.1| Poly(A) polymerase [Escherichia coli KTE237]
gi|432600654|ref|ZP_19836910.1| Poly(A) polymerase [Escherichia coli KTE66]
gi|432625110|ref|ZP_19861109.1| Poly(A) polymerase [Escherichia coli KTE76]
gi|432791370|ref|ZP_20025467.1| Poly(A) polymerase [Escherichia coli KTE78]
gi|432797340|ref|ZP_20031369.1| Poly(A) polymerase [Escherichia coli KTE79]
gi|432818364|ref|ZP_20052091.1| Poly(A) polymerase [Escherichia coli KTE115]
gi|432856953|ref|ZP_20084204.1| Poly(A) polymerase [Escherichia coli KTE144]
gi|432872687|ref|ZP_20092503.1| Poly(A) polymerase [Escherichia coli KTE147]
gi|291472486|gb|EFF14968.1| pcnB [Escherichia coli B354]
gi|300395720|gb|EFJ79258.1| polynucleotide adenylyltransferase [Escherichia coli MS 69-1]
gi|331071498|gb|EGI42855.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA280]
gi|338771717|gb|EGP26449.1| Poly(A) polymerase [Escherichia coli PCN033]
gi|371598802|gb|EHN87597.1| Poly(A) polymerase [Escherichia coli TA124]
gi|373245820|gb|EHP65285.1| Poly(A) polymerase [Escherichia coli 4_1_47FAA]
gi|386155027|gb|EIH11385.1| polynucleotide adenylyltransferase [Escherichia coli 97.0259]
gi|388389037|gb|EIL50580.1| poly(A) polymerase I [Escherichia coli KD2]
gi|431068243|gb|ELD76748.1| Poly(A) polymerase [Escherichia coli KTE236]
gi|431086678|gb|ELD92700.1| Poly(A) polymerase [Escherichia coli KTE237]
gi|431144693|gb|ELE46387.1| Poly(A) polymerase [Escherichia coli KTE66]
gi|431153176|gb|ELE54095.1| Poly(A) polymerase [Escherichia coli KTE76]
gi|431343038|gb|ELG30008.1| Poly(A) polymerase [Escherichia coli KTE78]
gi|431346554|gb|ELG33459.1| Poly(A) polymerase [Escherichia coli KTE79]
gi|431359353|gb|ELG45998.1| Poly(A) polymerase [Escherichia coli KTE115]
gi|431395461|gb|ELG78973.1| Poly(A) polymerase [Escherichia coli KTE144]
gi|431406032|gb|ELG89264.1| Poly(A) polymerase [Escherichia coli KTE147]
Length = 454
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|117622430|ref|YP_851343.1| poly(A) polymerase I [Escherichia coli APEC O1]
gi|168751363|ref|ZP_02776385.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4113]
gi|168755755|ref|ZP_02780762.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4401]
gi|168764713|ref|ZP_02789720.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4501]
gi|168770386|ref|ZP_02795393.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4486]
gi|168782034|ref|ZP_02807041.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4076]
gi|168789251|ref|ZP_02814258.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC869]
gi|168801481|ref|ZP_02826488.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC508]
gi|170680324|ref|YP_001742271.1| poly(A) polymerase I [Escherichia coli SMS-3-5]
gi|187731223|ref|YP_001878946.1| poly(A) polymerase I [Shigella boydii CDC 3083-94]
gi|188493474|ref|ZP_03000744.1| poly(A) polymerase [Escherichia coli 53638]
gi|191166336|ref|ZP_03028168.1| poly(A) polymerase [Escherichia coli B7A]
gi|191172771|ref|ZP_03034308.1| poly(A) polymerase [Escherichia coli F11]
gi|193063166|ref|ZP_03044257.1| poly(A) polymerase [Escherichia coli E22]
gi|194428279|ref|ZP_03060821.1| poly(A) polymerase [Escherichia coli B171]
gi|194433394|ref|ZP_03065673.1| poly(A) polymerase [Shigella dysenteriae 1012]
gi|195938175|ref|ZP_03083557.1| poly(A) polymerase I [Escherichia coli O157:H7 str. EC4024]
gi|208807142|ref|ZP_03249479.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4206]
gi|208814587|ref|ZP_03255916.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4045]
gi|208821338|ref|ZP_03261658.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4042]
gi|209398537|ref|YP_002268752.1| poly(A) polymerase I [Escherichia coli O157:H7 str. EC4115]
gi|215485303|ref|YP_002327734.1| poly(A) polymerase [Escherichia coli O127:H6 str. E2348/69]
gi|217326217|ref|ZP_03442301.1| poly(A) polymerase [Escherichia coli O157:H7 str. TW14588]
gi|227884943|ref|ZP_04002748.1| polynucleotide adenylyltransferase [Escherichia coli 83972]
gi|260842377|ref|YP_003220155.1| poly(A) polymerase I [Escherichia coli O103:H2 str. 12009]
gi|261226898|ref|ZP_05941179.1| poly(A) polymerase I [Escherichia coli O157:H7 str. FRIK2000]
gi|261255302|ref|ZP_05947835.1| poly(A) polymerase I [Escherichia coli O157:H7 str. FRIK966]
gi|300816181|ref|ZP_07096404.1| polynucleotide adenylyltransferase [Escherichia coli MS 107-1]
gi|300938547|ref|ZP_07153283.1| polynucleotide adenylyltransferase [Escherichia coli MS 21-1]
gi|300949830|ref|ZP_07163800.1| polynucleotide adenylyltransferase [Escherichia coli MS 116-1]
gi|300956012|ref|ZP_07168342.1| polynucleotide adenylyltransferase [Escherichia coli MS 175-1]
gi|300984714|ref|ZP_07177077.1| polynucleotide adenylyltransferase [Escherichia coli MS 200-1]
gi|300993664|ref|ZP_07180491.1| polynucleotide adenylyltransferase [Escherichia coli MS 45-1]
gi|301028631|ref|ZP_07191857.1| polynucleotide adenylyltransferase [Escherichia coli MS 196-1]
gi|301049947|ref|ZP_07196868.1| polynucleotide adenylyltransferase [Escherichia coli MS 185-1]
gi|301646461|ref|ZP_07246340.1| polynucleotide adenylyltransferase [Escherichia coli MS 146-1]
gi|307311408|ref|ZP_07591050.1| poly(A) polymerase [Escherichia coli W]
gi|309796317|ref|ZP_07690726.1| polynucleotide adenylyltransferase [Escherichia coli MS 145-7]
gi|312966274|ref|ZP_07780500.1| poly(A) polymerase family protein [Escherichia coli 2362-75]
gi|331640597|ref|ZP_08341745.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H736]
gi|331651047|ref|ZP_08352075.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli M718]
gi|331661215|ref|ZP_08362147.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA206]
gi|331681528|ref|ZP_08382165.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H299]
gi|386279188|ref|ZP_10056876.1| Poly(A) polymerase [Escherichia sp. 4_1_40B]
gi|386596963|ref|YP_006093363.1| poly(A) polymerase [Escherichia coli DH1]
gi|386597894|ref|YP_006099400.1| poly(A) polymerase [Escherichia coli IHE3034]
gi|386607446|ref|YP_006122932.1| poly(A) polymerase I [Escherichia coli W]
gi|386622556|ref|YP_006142284.1| poly(A) polymerase I [Escherichia coli O7:K1 str. CE10]
gi|386698642|ref|YP_006162479.1| poly(A) polymerase I [Escherichia coli KO11FL]
gi|386707872|ref|YP_006171593.1| poly(A) polymerase I [Escherichia coli W]
gi|387619911|ref|YP_006127538.1| poly(A) polymerase I [Escherichia coli DH1]
gi|404373455|ref|ZP_10978718.1| Poly(A) polymerase [Escherichia sp. 1_1_43]
gi|414574330|ref|ZP_11431545.1| poly(A) polymerase [Shigella sonnei 3233-85]
gi|415777499|ref|ZP_11488728.1| poly(A) polymerase family protein [Escherichia coli 3431]
gi|415801971|ref|ZP_11499848.1| poly(A) polymerase family protein [Escherichia coli E128010]
gi|415832478|ref|ZP_11517931.1| poly(A) polymerase family protein [Escherichia coli OK1357]
gi|415837536|ref|ZP_11519610.1| poly(A) polymerase family protein [Escherichia coli RN587/1]
gi|415849910|ref|ZP_11526981.1| poly(A) polymerase family protein [Shigella sonnei 53G]
gi|415880181|ref|ZP_11545048.1| polyA polymerase [Escherichia coli MS 79-10]
gi|416259075|ref|ZP_11639871.1| Poly(A) polymerase [Shigella dysenteriae CDC 74-1112]
gi|416294297|ref|ZP_11650782.1| Poly(A) polymerase [Shigella flexneri CDC 796-83]
gi|416314073|ref|ZP_11658531.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1044]
gi|416318976|ref|ZP_11661528.1| Poly(A) polymerase [Escherichia coli O157:H7 str. EC1212]
gi|416325865|ref|ZP_11666189.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1125]
gi|416777794|ref|ZP_11875434.1| poly(A) polymerase I [Escherichia coli O157:H7 str. G5101]
gi|416785027|ref|ZP_11878503.1| poly(A) polymerase I [Escherichia coli O157:H- str. 493-89]
gi|416795799|ref|ZP_11883341.1| poly(A) polymerase I [Escherichia coli O157:H- str. H 2687]
gi|416807828|ref|ZP_11888167.1| poly(A) polymerase I [Escherichia coli O55:H7 str. 3256-97]
gi|416818977|ref|ZP_11893047.1| poly(A) polymerase I [Escherichia coli O55:H7 str. USDA 5905]
gi|416828313|ref|ZP_11897912.1| poly(A) polymerase I [Escherichia coli O157:H7 str. LSU-61]
gi|417082450|ref|ZP_11950784.1| poly(A) polymerase I [Escherichia coli cloneA_i1]
gi|417151671|ref|ZP_11991198.1| polynucleotide adenylyltransferase [Escherichia coli 1.2264]
gi|417175538|ref|ZP_12005334.1| polynucleotide adenylyltransferase [Escherichia coli 3.2608]
gi|417182061|ref|ZP_12008897.1| polynucleotide adenylyltransferase [Escherichia coli 93.0624]
gi|417224553|ref|ZP_12027844.1| polynucleotide adenylyltransferase [Escherichia coli 96.154]
gi|417230158|ref|ZP_12031744.1| polynucleotide adenylyltransferase [Escherichia coli 5.0959]
gi|417252509|ref|ZP_12044268.1| polynucleotide adenylyltransferase [Escherichia coli 4.0967]
gi|417263483|ref|ZP_12050892.1| polynucleotide adenylyltransferase [Escherichia coli 2.3916]
gi|417273492|ref|ZP_12060837.1| polynucleotide adenylyltransferase [Escherichia coli 2.4168]
gi|417277877|ref|ZP_12065197.1| polynucleotide adenylyltransferase [Escherichia coli 3.2303]
gi|417284573|ref|ZP_12071868.1| polynucleotide adenylyltransferase [Escherichia coli 3003]
gi|417288086|ref|ZP_12075372.1| polynucleotide adenylyltransferase [Escherichia coli TW07793]
gi|417294232|ref|ZP_12081511.1| polynucleotide adenylyltransferase [Escherichia coli B41]
gi|417594991|ref|ZP_12245667.1| poly(A) polymerase family protein [Escherichia coli 3030-1]
gi|417600405|ref|ZP_12250993.1| poly(A) polymerase family protein [Escherichia coli STEC_94C]
gi|417606069|ref|ZP_12256603.1| poly(A) polymerase family protein [Escherichia coli STEC_DG131-3]
gi|417611153|ref|ZP_12261629.1| poly(A) polymerase family protein [Escherichia coli STEC_EH250]
gi|417616478|ref|ZP_12266918.1| poly(A) polymerase family protein [Escherichia coli G58-1]
gi|417621372|ref|ZP_12271703.1| poly(A) polymerase family protein [Escherichia coli STEC_H.1.8]
gi|417632064|ref|ZP_12282290.1| poly(A) polymerase family protein [Escherichia coli STEC_MHI813]
gi|417632620|ref|ZP_12282844.1| poly(A) polymerase family protein [Escherichia coli STEC_S1191]
gi|417670295|ref|ZP_12319824.1| poly(A) polymerase family protein [Escherichia coli STEC_O31]
gi|417670547|ref|ZP_12320049.1| poly(A) polymerase family protein [Shigella dysenteriae 155-74]
gi|417680324|ref|ZP_12329714.1| poly(A) polymerase family protein [Shigella boydii 3594-74]
gi|417687916|ref|ZP_12337168.1| poly(A) polymerase family protein [Shigella boydii 5216-82]
gi|417753963|ref|ZP_12402060.1| poly(A) polymerase I [Escherichia coli DEC2B]
gi|418261569|ref|ZP_12883563.1| poly(A) polymerase I [Shigella sonnei str. Moseley]
gi|418301030|ref|ZP_12912824.1| poly(A) polymerase family protein [Escherichia coli UMNF18]
gi|418959591|ref|ZP_13511489.1| poly(A) polymerase I [Escherichia coli J53]
gi|418995168|ref|ZP_13542788.1| poly(A) polymerase I [Escherichia coli DEC1A]
gi|419000303|ref|ZP_13547870.1| poly(A) polymerase I [Escherichia coli DEC1B]
gi|419005861|ref|ZP_13553319.1| poly(A) polymerase I [Escherichia coli DEC1C]
gi|419011696|ref|ZP_13559066.1| poly(A) polymerase [Escherichia coli DEC1D]
gi|419016633|ref|ZP_13563961.1| poly(A) polymerase I [Escherichia coli DEC1E]
gi|419022224|ref|ZP_13569473.1| poly(A) polymerase [Escherichia coli DEC2A]
gi|419027117|ref|ZP_13574321.1| poly(A) polymerase I [Escherichia coli DEC2C]
gi|419032792|ref|ZP_13579893.1| poly(A) polymerase I [Escherichia coli DEC2D]
gi|419037899|ref|ZP_13584962.1| poly(A) polymerase I [Escherichia coli DEC2E]
gi|419048421|ref|ZP_13595346.1| poly(A) polymerase I [Escherichia coli DEC3A]
gi|419054428|ref|ZP_13601291.1| poly(A) polymerase I [Escherichia coli DEC3B]
gi|419054793|ref|ZP_13601654.1| poly(A) polymerase I [Escherichia coli DEC3C]
gi|419060349|ref|ZP_13607137.1| poly(A) polymerase I [Escherichia coli DEC3D]
gi|419066180|ref|ZP_13612871.1| poly(A) polymerase I [Escherichia coli DEC3E]
gi|419073109|ref|ZP_13618685.1| poly(A) polymerase I [Escherichia coli DEC3F]
gi|419083900|ref|ZP_13629337.1| poly(A) polymerase I [Escherichia coli DEC4A]
gi|419089908|ref|ZP_13635252.1| poly(A) polymerase I [Escherichia coli DEC4B]
gi|419095368|ref|ZP_13640637.1| poly(A) polymerase I [Escherichia coli DEC4C]
gi|419101345|ref|ZP_13646526.1| poly(A) polymerase I [Escherichia coli DEC4D]
gi|419107188|ref|ZP_13652301.1| poly(A) polymerase I [Escherichia coli DEC4E]
gi|419112632|ref|ZP_13657677.1| poly(A) polymerase I [Escherichia coli DEC4F]
gi|419112965|ref|ZP_13658001.1| poly(A) polymerase I [Escherichia coli DEC5A]
gi|419118471|ref|ZP_13663459.1| poly(A) polymerase I [Escherichia coli DEC5B]
gi|419123970|ref|ZP_13668880.1| poly(A) polymerase I [Escherichia coli DEC5C]
gi|419129706|ref|ZP_13674565.1| poly(A) polymerase I [Escherichia coli DEC5D]
gi|419140107|ref|ZP_13684891.1| poly(A) polymerase [Escherichia coli DEC5E]
gi|419140510|ref|ZP_13685270.1| poly(A) polymerase [Escherichia coli DEC6A]
gi|419146022|ref|ZP_13690720.1| poly(A) polymerase I [Escherichia coli DEC6B]
gi|419151982|ref|ZP_13696575.1| poly(A) polymerase [Escherichia coli DEC6C]
gi|419157397|ref|ZP_13701929.1| poly(A) polymerase [Escherichia coli DEC6D]
gi|419162405|ref|ZP_13706886.1| poly(A) polymerase I [Escherichia coli DEC6E]
gi|419276245|ref|ZP_13818518.1| poly(A) polymerase I [Escherichia coli DEC10E]
gi|419292813|ref|ZP_13834891.1| poly(A) polymerase I [Escherichia coli DEC11A]
gi|419298132|ref|ZP_13840160.1| poly(A) polymerase I [Escherichia coli DEC11B]
gi|419298331|ref|ZP_13840357.1| poly(A) polymerase [Escherichia coli DEC11C]
gi|419309683|ref|ZP_13851563.1| poly(A) polymerase [Escherichia coli DEC11E]
gi|419314987|ref|ZP_13856820.1| poly(A) polymerase [Escherichia coli DEC12A]
gi|419320782|ref|ZP_13862528.1| poly(A) polymerase I [Escherichia coli DEC12B]
gi|419326985|ref|ZP_13868623.1| poly(A) polymerase [Escherichia coli DEC12C]
gi|419332402|ref|ZP_13873970.1| poly(A) polymerase I [Escherichia coli DEC12D]
gi|419338153|ref|ZP_13879645.1| poly(A) polymerase I [Escherichia coli DEC12E]
gi|419368421|ref|ZP_13909555.1| poly(A) polymerase [Escherichia coli DEC14A]
gi|419373578|ref|ZP_13914640.1| poly(A) polymerase I [Escherichia coli DEC14B]
gi|419379003|ref|ZP_13919987.1| poly(A) polymerase I [Escherichia coli DEC14C]
gi|419384261|ref|ZP_13925170.1| poly(A) polymerase I [Escherichia coli DEC14D]
gi|419806896|ref|ZP_14331983.1| poly(A) polymerase I [Escherichia coli AI27]
gi|419912681|ref|ZP_14431129.1| poly(A) polymerase I [Escherichia coli KD1]
gi|419921821|ref|ZP_14439856.1| poly(A) polymerase I [Escherichia coli 541-15]
gi|419929395|ref|ZP_14447069.1| poly(A) polymerase I [Escherichia coli 541-1]
gi|419937884|ref|ZP_14454729.1| poly(A) polymerase I [Escherichia coli 75]
gi|419942421|ref|ZP_14459024.1| poly(A) polymerase I [Escherichia coli HM605]
gi|419951461|ref|ZP_14467654.1| poly(A) polymerase I [Escherichia coli CUMT8]
gi|420267404|ref|ZP_14769815.1| poly(A) polymerase I [Escherichia coli PA22]
gi|420273115|ref|ZP_14775450.1| poly(A) polymerase I [Escherichia coli PA40]
gi|420283593|ref|ZP_14785818.1| poly(A) polymerase I [Escherichia coli TW06591]
gi|420284644|ref|ZP_14786864.1| poly(A) polymerase I [Escherichia coli TW10246]
gi|420290165|ref|ZP_14792334.1| poly(A) polymerase I [Escherichia coli TW11039]
gi|420295887|ref|ZP_14797985.1| poly(A) polymerase I [Escherichia coli TW09109]
gi|420301832|ref|ZP_14803867.1| poly(A) polymerase I [Escherichia coli TW10119]
gi|420307385|ref|ZP_14809361.1| poly(A) polymerase I [Escherichia coli EC1738]
gi|420313081|ref|ZP_14814996.1| poly(A) polymerase I [Escherichia coli EC1734]
gi|420323797|ref|ZP_14825588.1| poly(A) polymerase [Shigella flexneri CCH060]
gi|420334403|ref|ZP_14836026.1| poly(A) polymerase [Shigella flexneri K-315]
gi|420345232|ref|ZP_14846667.1| poly(A) polymerase [Shigella boydii 965-58]
gi|420351016|ref|ZP_14852219.1| poly(A) polymerase [Shigella boydii 4444-74]
gi|420356710|ref|ZP_14857736.1| poly(A) polymerase [Shigella sonnei 3226-85]
gi|420361744|ref|ZP_14862676.1| poly(A) polymerase I [Shigella sonnei 4822-66]
gi|420389473|ref|ZP_14888747.1| poly(A) polymerase I [Escherichia coli EPEC C342-62]
gi|421685497|ref|ZP_16125271.1| poly(A) polymerase I [Shigella flexneri 1485-80]
gi|421810288|ref|ZP_16246108.1| poly(A) polymerase [Escherichia coli 8.0416]
gi|421816361|ref|ZP_16251934.1| poly(A) polymerase [Escherichia coli 10.0821]
gi|421821755|ref|ZP_16257200.1| poly(A) polymerase I [Escherichia coli FRIK920]
gi|421828508|ref|ZP_16263840.1| poly(A) polymerase I [Escherichia coli PA7]
gi|422354225|ref|ZP_16434967.1| polynucleotide adenylyltransferase [Escherichia coli MS 117-3]
gi|422360959|ref|ZP_16441587.1| polynucleotide adenylyltransferase [Escherichia coli MS 110-3]
gi|422362622|ref|ZP_16443183.1| polynucleotide adenylyltransferase [Escherichia coli MS 153-1]
gi|422367533|ref|ZP_16447968.1| polynucleotide adenylyltransferase [Escherichia coli MS 16-3]
gi|422376496|ref|ZP_16456747.1| polynucleotide adenylyltransferase [Escherichia coli MS 60-1]
gi|422380498|ref|ZP_16460676.1| polynucleotide adenylyltransferase [Escherichia coli MS 57-2]
gi|422750466|ref|ZP_16804376.1| poly(A) polymerase [Escherichia coli H252]
gi|422756485|ref|ZP_16810308.1| poly(A) polymerase [Escherichia coli H263]
gi|422761821|ref|ZP_16815579.1| poly(A) polymerase [Escherichia coli E1167]
gi|422768399|ref|ZP_16822124.1| poly(A) polymerase [Escherichia coli E1520]
gi|422772934|ref|ZP_16826620.1| poly(A) polymerase [Escherichia coli E482]
gi|422776782|ref|ZP_16830436.1| poly(A) polymerase [Escherichia coli H120]
gi|422792794|ref|ZP_16845493.1| poly(A) polymerase [Escherichia coli TA007]
gi|422816159|ref|ZP_16864374.1| Poly(A) polymerase [Escherichia coli M919]
gi|422830309|ref|ZP_16878468.1| Poly(A) polymerase [Escherichia coli B093]
gi|422834435|ref|ZP_16882497.1| Poly(A) polymerase [Escherichia coli E101]
gi|422839854|ref|ZP_16887825.1| Poly(A) polymerase [Escherichia coli H397]
gi|423652508|ref|ZP_17627912.1| poly(A) polymerase I [Escherichia coli PA31]
gi|423700925|ref|ZP_17675384.1| Poly(A) polymerase [Escherichia coli H730]
gi|424074904|ref|ZP_17812296.1| poly(A) polymerase I [Escherichia coli FDA505]
gi|424081154|ref|ZP_17818061.1| poly(A) polymerase I [Escherichia coli FDA517]
gi|424087830|ref|ZP_17824132.1| poly(A) polymerase I [Escherichia coli FRIK1996]
gi|424094040|ref|ZP_17829853.1| poly(A) polymerase I [Escherichia coli FRIK1985]
gi|424100453|ref|ZP_17835662.1| poly(A) polymerase I [Escherichia coli FRIK1990]
gi|424107277|ref|ZP_17841898.1| poly(A) polymerase I [Escherichia coli 93-001]
gi|424113251|ref|ZP_17847450.1| poly(A) polymerase I [Escherichia coli PA3]
gi|424119380|ref|ZP_17853139.1| poly(A) polymerase I [Escherichia coli PA5]
gi|424125597|ref|ZP_17858839.1| poly(A) polymerase I [Escherichia coli PA9]
gi|424131604|ref|ZP_17864460.1| poly(A) polymerase I [Escherichia coli PA10]
gi|424138217|ref|ZP_17870559.1| poly(A) polymerase I [Escherichia coli PA14]
gi|424144671|ref|ZP_17876479.1| poly(A) polymerase I [Escherichia coli PA15]
gi|424150817|ref|ZP_17882123.1| poly(A) polymerase I [Escherichia coli PA24]
gi|424260169|ref|ZP_17893105.1| poly(A) polymerase I [Escherichia coli PA25]
gi|424260854|ref|ZP_17893440.1| poly(A) polymerase I [Escherichia coli PA28]
gi|424417092|ref|ZP_17899212.1| poly(A) polymerase I [Escherichia coli PA32]
gi|424453215|ref|ZP_17904802.1| poly(A) polymerase I [Escherichia coli PA33]
gi|424459494|ref|ZP_17910502.1| poly(A) polymerase I [Escherichia coli PA39]
gi|424465956|ref|ZP_17916193.1| poly(A) polymerase I [Escherichia coli PA41]
gi|424472556|ref|ZP_17922268.1| poly(A) polymerase I [Escherichia coli PA42]
gi|424478526|ref|ZP_17927815.1| poly(A) polymerase I [Escherichia coli TW07945]
gi|424484552|ref|ZP_17933471.1| poly(A) polymerase I [Escherichia coli TW09098]
gi|424490645|ref|ZP_17939119.1| poly(A) polymerase I [Escherichia coli TW09195]
gi|424497766|ref|ZP_17945089.1| poly(A) polymerase I [Escherichia coli EC4203]
gi|424504011|ref|ZP_17950836.1| poly(A) polymerase I [Escherichia coli EC4196]
gi|424510254|ref|ZP_17956557.1| poly(A) polymerase I [Escherichia coli TW14313]
gi|424517834|ref|ZP_17962308.1| poly(A) polymerase I [Escherichia coli TW14301]
gi|424523663|ref|ZP_17967730.1| poly(A) polymerase I [Escherichia coli EC4421]
gi|424529868|ref|ZP_17973537.1| poly(A) polymerase I [Escherichia coli EC4422]
gi|424535840|ref|ZP_17979148.1| poly(A) polymerase I [Escherichia coli EC4013]
gi|424541726|ref|ZP_17984611.1| poly(A) polymerase I [Escherichia coli EC4402]
gi|424548053|ref|ZP_17990315.1| poly(A) polymerase I [Escherichia coli EC4439]
gi|424554342|ref|ZP_17996110.1| poly(A) polymerase I [Escherichia coli EC4436]
gi|424560688|ref|ZP_18002014.1| poly(A) polymerase I [Escherichia coli EC4437]
gi|424566698|ref|ZP_18007664.1| poly(A) polymerase I [Escherichia coli EC4448]
gi|424572896|ref|ZP_18013367.1| poly(A) polymerase I [Escherichia coli EC1845]
gi|424584724|ref|ZP_18024344.1| poly(A) polymerase I [Escherichia coli EC1863]
gi|425095537|ref|ZP_18498597.1| poly(A) polymerase [Escherichia coli 3.4870]
gi|425101621|ref|ZP_18504309.1| poly(A) polymerase [Escherichia coli 5.2239]
gi|425107479|ref|ZP_18509764.1| poly(A) polymerase [Escherichia coli 6.0172]
gi|425123291|ref|ZP_18524906.1| poly(A) polymerase [Escherichia coli 8.0586]
gi|425129317|ref|ZP_18530460.1| poly(A) polymerase [Escherichia coli 8.2524]
gi|425135659|ref|ZP_18536428.1| poly(A) polymerase [Escherichia coli 10.0833]
gi|425141605|ref|ZP_18541937.1| poly(A) polymerase [Escherichia coli 10.0869]
gi|425147881|ref|ZP_18547818.1| poly(A) polymerase [Escherichia coli 88.0221]
gi|425153497|ref|ZP_18553084.1| poly(A) polymerase I [Escherichia coli PA34]
gi|425159957|ref|ZP_18559167.1| poly(A) polymerase I [Escherichia coli FDA506]
gi|425165473|ref|ZP_18564316.1| poly(A) polymerase I [Escherichia coli FDA507]
gi|425171759|ref|ZP_18570196.1| poly(A) polymerase I [Escherichia coli FDA504]
gi|425177562|ref|ZP_18575649.1| poly(A) polymerase I [Escherichia coli FRIK1999]
gi|425183786|ref|ZP_18581446.1| poly(A) polymerase I [Escherichia coli FRIK1997]
gi|425190519|ref|ZP_18587678.1| poly(A) polymerase I [Escherichia coli NE1487]
gi|425196816|ref|ZP_18593508.1| poly(A) polymerase I [Escherichia coli NE037]
gi|425203514|ref|ZP_18599676.1| poly(A) polymerase I [Escherichia coli FRIK2001]
gi|425209288|ref|ZP_18605060.1| poly(A) polymerase [Escherichia coli PA4]
gi|425215326|ref|ZP_18610680.1| poly(A) polymerase I [Escherichia coli PA23]
gi|425221892|ref|ZP_18616787.1| poly(A) polymerase I [Escherichia coli PA49]
gi|425228144|ref|ZP_18622576.1| poly(A) polymerase I [Escherichia coli PA45]
gi|425234444|ref|ZP_18628438.1| poly(A) polymerase I [Escherichia coli TT12B]
gi|425240420|ref|ZP_18634089.1| poly(A) polymerase I [Escherichia coli MA6]
gi|425246499|ref|ZP_18639738.1| poly(A) polymerase I [Escherichia coli 5905]
gi|425252289|ref|ZP_18645208.1| poly(A) polymerase I [Escherichia coli CB7326]
gi|425258622|ref|ZP_18651027.1| poly(A) polymerase I [Escherichia coli EC96038]
gi|425264738|ref|ZP_18656694.1| poly(A) polymerase I [Escherichia coli 5412]
gi|425270851|ref|ZP_18662376.1| poly(A) polymerase I [Escherichia coli TW15901]
gi|425276011|ref|ZP_18667367.1| poly(A) polymerase I [Escherichia coli ARS4.2123]
gi|425281473|ref|ZP_18672604.1| poly(A) polymerase I [Escherichia coli TW00353]
gi|425292120|ref|ZP_18682758.1| poly(A) polymerase I [Escherichia coli PA38]
gi|425298315|ref|ZP_18688373.1| poly(A) polymerase I [Escherichia coli 07798]
gi|425303654|ref|ZP_18693469.1| poly(A) polymerase I [Escherichia coli N1]
gi|425308899|ref|ZP_18698411.1| poly(A) polymerase I [Escherichia coli EC1735]
gi|425314827|ref|ZP_18703945.1| poly(A) polymerase I [Escherichia coli EC1736]
gi|425320904|ref|ZP_18709624.1| poly(A) polymerase I [Escherichia coli EC1737]
gi|425327064|ref|ZP_18715336.1| poly(A) polymerase I [Escherichia coli EC1846]
gi|425333253|ref|ZP_18721022.1| poly(A) polymerase I [Escherichia coli EC1847]
gi|425339672|ref|ZP_18726953.1| poly(A) polymerase I [Escherichia coli EC1848]
gi|425345550|ref|ZP_18732398.1| poly(A) polymerase I [Escherichia coli EC1849]
gi|425351766|ref|ZP_18738187.1| poly(A) polymerase I [Escherichia coli EC1850]
gi|425357751|ref|ZP_18743765.1| poly(A) polymerase I [Escherichia coli EC1856]
gi|425363864|ref|ZP_18749466.1| poly(A) polymerase I [Escherichia coli EC1862]
gi|425370298|ref|ZP_18755304.1| poly(A) polymerase I [Escherichia coli EC1864]
gi|425389152|ref|ZP_18772686.1| poly(A) polymerase I [Escherichia coli EC1866]
gi|425389795|ref|ZP_18773290.1| poly(A) polymerase I [Escherichia coli EC1868]
gi|425395919|ref|ZP_18778999.1| poly(A) polymerase I [Escherichia coli EC1869]
gi|425408076|ref|ZP_18790268.1| poly(A) polymerase I [Escherichia coli EC1870]
gi|425408451|ref|ZP_18790640.1| poly(A) polymerase I [Escherichia coli NE098]
gi|425414720|ref|ZP_18796391.1| poly(A) polymerase I [Escherichia coli FRIK523]
gi|425425869|ref|ZP_18806954.1| poly(A) polymerase I [Escherichia coli 0.1304]
gi|428944501|ref|ZP_19017193.1| poly(A) polymerase [Escherichia coli 88.1467]
gi|428950675|ref|ZP_19022856.1| poly(A) polymerase [Escherichia coli 88.1042]
gi|428956521|ref|ZP_19028269.1| poly(A) polymerase [Escherichia coli 89.0511]
gi|428962889|ref|ZP_19034110.1| poly(A) polymerase [Escherichia coli 90.0091]
gi|428968928|ref|ZP_19039595.1| poly(A) polymerase [Escherichia coli 90.0039]
gi|428975522|ref|ZP_19045733.1| poly(A) polymerase [Escherichia coli 90.2281]
gi|428981149|ref|ZP_19050920.1| poly(A) polymerase [Escherichia coli 93.0055]
gi|428987477|ref|ZP_19056804.1| poly(A) polymerase [Escherichia coli 93.0056]
gi|428993288|ref|ZP_19062232.1| poly(A) polymerase [Escherichia coli 94.0618]
gi|428999378|ref|ZP_19067928.1| poly(A) polymerase [Escherichia coli 95.0183]
gi|429005616|ref|ZP_19073585.1| poly(A) polymerase [Escherichia coli 95.1288]
gi|429011978|ref|ZP_19079267.1| poly(A) polymerase [Escherichia coli 95.0943]
gi|429018179|ref|ZP_19084995.1| poly(A) polymerase [Escherichia coli 96.0428]
gi|429023859|ref|ZP_19090310.1| poly(A) polymerase [Escherichia coli 96.0427]
gi|429030163|ref|ZP_19096072.1| poly(A) polymerase [Escherichia coli 96.0939]
gi|429036316|ref|ZP_19101795.1| poly(A) polymerase [Escherichia coli 96.0932]
gi|429042363|ref|ZP_19107401.1| poly(A) polymerase [Escherichia coli 96.0107]
gi|429048120|ref|ZP_19112788.1| poly(A) polymerase [Escherichia coli 97.0003]
gi|429053480|ref|ZP_19117997.1| poly(A) polymerase [Escherichia coli 97.1742]
gi|429059182|ref|ZP_19123352.1| poly(A) polymerase [Escherichia coli 97.0007]
gi|429064564|ref|ZP_19128464.1| poly(A) polymerase [Escherichia coli 99.0672]
gi|429071184|ref|ZP_19134552.1| poly(A) polymerase [Escherichia coli 99.0678]
gi|429076414|ref|ZP_19139644.1| poly(A) polymerase [Escherichia coli 99.0713]
gi|429823626|ref|ZP_19355183.1| poly(A) polymerase [Escherichia coli 96.0109]
gi|429829997|ref|ZP_19360914.1| poly(A) polymerase [Escherichia coli 97.0010]
gi|432356504|ref|ZP_19599752.1| Poly(A) polymerase [Escherichia coli KTE4]
gi|432366002|ref|ZP_19609137.1| Poly(A) polymerase [Escherichia coli KTE5]
gi|432368135|ref|ZP_19611243.1| Poly(A) polymerase [Escherichia coli KTE10]
gi|432384701|ref|ZP_19627614.1| Poly(A) polymerase [Escherichia coli KTE15]
gi|432385530|ref|ZP_19628432.1| Poly(A) polymerase [Escherichia coli KTE16]
gi|432395993|ref|ZP_19638786.1| Poly(A) polymerase [Escherichia coli KTE25]
gi|432405028|ref|ZP_19647752.1| Poly(A) polymerase [Escherichia coli KTE28]
gi|432410146|ref|ZP_19652833.1| Poly(A) polymerase [Escherichia coli KTE39]
gi|432415095|ref|ZP_19657730.1| Poly(A) polymerase [Escherichia coli KTE44]
gi|432430304|ref|ZP_19672754.1| Poly(A) polymerase [Escherichia coli KTE187]
gi|432434693|ref|ZP_19677104.1| Poly(A) polymerase [Escherichia coli KTE188]
gi|432439480|ref|ZP_19681845.1| Poly(A) polymerase [Escherichia coli KTE189]
gi|432444603|ref|ZP_19686914.1| Poly(A) polymerase [Escherichia coli KTE191]
gi|432452898|ref|ZP_19695145.1| Poly(A) polymerase [Escherichia coli KTE193]
gi|432454922|ref|ZP_19697134.1| Poly(A) polymerase [Escherichia coli KTE201]
gi|432469477|ref|ZP_19711533.1| Poly(A) polymerase [Escherichia coli KTE206]
gi|432479468|ref|ZP_19721434.1| Poly(A) polymerase [Escherichia coli KTE210]
gi|432493972|ref|ZP_19735794.1| Poly(A) polymerase [Escherichia coli KTE214]
gi|432510377|ref|ZP_19749237.1| Poly(A) polymerase [Escherichia coli KTE220]
gi|432512342|ref|ZP_19749589.1| Poly(A) polymerase [Escherichia coli KTE224]
gi|432522286|ref|ZP_19759431.1| Poly(A) polymerase [Escherichia coli KTE230]
gi|432552182|ref|ZP_19788916.1| Poly(A) polymerase [Escherichia coli KTE47]
gi|432562064|ref|ZP_19798697.1| Poly(A) polymerase [Escherichia coli KTE51]
gi|432581336|ref|ZP_19817754.1| Poly(A) polymerase [Escherichia coli KTE57]
gi|432586474|ref|ZP_19822847.1| Poly(A) polymerase [Escherichia coli KTE58]
gi|432591147|ref|ZP_19827480.1| Poly(A) polymerase [Escherichia coli KTE60]
gi|432596043|ref|ZP_19832333.1| Poly(A) polymerase [Escherichia coli KTE62]
gi|432606010|ref|ZP_19842210.1| Poly(A) polymerase [Escherichia coli KTE67]
gi|432609850|ref|ZP_19846026.1| Poly(A) polymerase [Escherichia coli KTE72]
gi|432614945|ref|ZP_19851082.1| Poly(A) polymerase [Escherichia coli KTE75]
gi|432625702|ref|ZP_19861691.1| Poly(A) polymerase [Escherichia coli KTE77]
gi|432635462|ref|ZP_19871352.1| Poly(A) polymerase [Escherichia coli KTE81]
gi|432644553|ref|ZP_19880360.1| Poly(A) polymerase [Escherichia coli KTE86]
gi|432649514|ref|ZP_19885284.1| Poly(A) polymerase [Escherichia coli KTE87]
gi|432654187|ref|ZP_19889909.1| Poly(A) polymerase [Escherichia coli KTE93]
gi|432678557|ref|ZP_19913962.1| Poly(A) polymerase [Escherichia coli KTE143]
gi|432684023|ref|ZP_19919346.1| Poly(A) polymerase [Escherichia coli KTE156]
gi|432689927|ref|ZP_19925181.1| Poly(A) polymerase [Escherichia coli KTE161]
gi|432697451|ref|ZP_19932627.1| Poly(A) polymerase [Escherichia coli KTE169]
gi|432702686|ref|ZP_19937818.1| Poly(A) polymerase [Escherichia coli KTE171]
gi|432711832|ref|ZP_19946886.1| Poly(A) polymerase [Escherichia coli KTE8]
gi|432721741|ref|ZP_19956670.1| Poly(A) polymerase [Escherichia coli KTE17]
gi|432726151|ref|ZP_19961040.1| Poly(A) polymerase [Escherichia coli KTE18]
gi|432730866|ref|ZP_19965727.1| Poly(A) polymerase [Escherichia coli KTE45]
gi|432735607|ref|ZP_19970399.1| Poly(A) polymerase [Escherichia coli KTE42]
gi|432739919|ref|ZP_19974642.1| Poly(A) polymerase [Escherichia coli KTE23]
gi|432744070|ref|ZP_19978779.1| Poly(A) polymerase [Escherichia coli KTE43]
gi|432752970|ref|ZP_19987541.1| Poly(A) polymerase [Escherichia coli KTE29]
gi|432757659|ref|ZP_19992193.1| Poly(A) polymerase [Escherichia coli KTE22]
gi|432762417|ref|ZP_19996881.1| Poly(A) polymerase [Escherichia coli KTE46]
gi|432777028|ref|ZP_20011284.1| Poly(A) polymerase [Escherichia coli KTE59]
gi|432782032|ref|ZP_20016219.1| Poly(A) polymerase [Escherichia coli KTE63]
gi|432790728|ref|ZP_20024849.1| Poly(A) polymerase [Escherichia coli KTE65]
gi|432800471|ref|ZP_20034462.1| Poly(A) polymerase [Escherichia coli KTE84]
gi|432808777|ref|ZP_20042687.1| Poly(A) polymerase [Escherichia coli KTE91]
gi|432819495|ref|ZP_20053210.1| Poly(A) polymerase [Escherichia coli KTE118]
gi|432825624|ref|ZP_20059281.1| Poly(A) polymerase [Escherichia coli KTE123]
gi|432830119|ref|ZP_20063729.1| Poly(A) polymerase [Escherichia coli KTE135]
gi|432842405|ref|ZP_20075833.1| Poly(A) polymerase [Escherichia coli KTE141]
gi|432858448|ref|ZP_20084944.1| Poly(A) polymerase [Escherichia coli KTE146]
gi|432892716|ref|ZP_20104883.1| Poly(A) polymerase [Escherichia coli KTE165]
gi|432896816|ref|ZP_20107910.1| Poly(A) polymerase [Escherichia coli KTE192]
gi|432902445|ref|ZP_20112193.1| Poly(A) polymerase [Escherichia coli KTE194]
gi|432932404|ref|ZP_20132306.1| Poly(A) polymerase [Escherichia coli KTE184]
gi|432941839|ref|ZP_20139337.1| Poly(A) polymerase [Escherichia coli KTE183]
gi|432944709|ref|ZP_20141119.1| Poly(A) polymerase [Escherichia coli KTE196]
gi|432952800|ref|ZP_20145543.1| Poly(A) polymerase [Escherichia coli KTE197]
gi|432966285|ref|ZP_20155205.1| Poly(A) polymerase [Escherichia coli KTE203]
gi|432970281|ref|ZP_20159163.1| Poly(A) polymerase [Escherichia coli KTE207]
gi|432976849|ref|ZP_20165676.1| Poly(A) polymerase [Escherichia coli KTE209]
gi|432983867|ref|ZP_20172609.1| Poly(A) polymerase [Escherichia coli KTE215]
gi|432989085|ref|ZP_20177758.1| Poly(A) polymerase [Escherichia coli KTE217]
gi|432993901|ref|ZP_20182522.1| Poly(A) polymerase [Escherichia coli KTE218]
gi|432998319|ref|ZP_20186869.1| Poly(A) polymerase [Escherichia coli KTE223]
gi|433003686|ref|ZP_20192125.1| Poly(A) polymerase [Escherichia coli KTE227]
gi|433010893|ref|ZP_20199298.1| Poly(A) polymerase [Escherichia coli KTE229]
gi|433012318|ref|ZP_20200707.1| Poly(A) polymerase [Escherichia coli KTE104]
gi|433026513|ref|ZP_20214467.1| Poly(A) polymerase [Escherichia coli KTE106]
gi|433027163|ref|ZP_20215043.1| Poly(A) polymerase [Escherichia coli KTE109]
gi|433031550|ref|ZP_20219375.1| Poly(A) polymerase [Escherichia coli KTE112]
gi|433037070|ref|ZP_20224698.1| Poly(A) polymerase [Escherichia coli KTE113]
gi|433041639|ref|ZP_20229178.1| Poly(A) polymerase [Escherichia coli KTE117]
gi|433046193|ref|ZP_20233637.1| Poly(A) polymerase [Escherichia coli KTE120]
gi|433056470|ref|ZP_20243571.1| Poly(A) polymerase [Escherichia coli KTE124]
gi|433076303|ref|ZP_20262883.1| Poly(A) polymerase [Escherichia coli KTE131]
gi|433081049|ref|ZP_20267529.1| Poly(A) polymerase [Escherichia coli KTE133]
gi|433085796|ref|ZP_20272206.1| Poly(A) polymerase [Escherichia coli KTE137]
gi|433099683|ref|ZP_20285804.1| Poly(A) polymerase [Escherichia coli KTE145]
gi|433109320|ref|ZP_20295204.1| Poly(A) polymerase [Escherichia coli KTE150]
gi|433114081|ref|ZP_20299906.1| Poly(A) polymerase [Escherichia coli KTE153]
gi|433118621|ref|ZP_20304344.1| Poly(A) polymerase [Escherichia coli KTE157]
gi|433123742|ref|ZP_20309341.1| Poly(A) polymerase [Escherichia coli KTE160]
gi|433137811|ref|ZP_20323105.1| Poly(A) polymerase [Escherichia coli KTE167]
gi|433142643|ref|ZP_20327829.1| Poly(A) polymerase [Escherichia coli KTE168]
gi|433147563|ref|ZP_20332650.1| Poly(A) polymerase [Escherichia coli KTE174]
gi|433152280|ref|ZP_20337254.1| Poly(A) polymerase [Escherichia coli KTE176]
gi|433161926|ref|ZP_20346696.1| Poly(A) polymerase [Escherichia coli KTE179]
gi|433166861|ref|ZP_20351547.1| Poly(A) polymerase [Escherichia coli KTE180]
gi|433191466|ref|ZP_20375533.1| Poly(A) polymerase [Escherichia coli KTE88]
gi|433191933|ref|ZP_20375966.1| Poly(A) polymerase [Escherichia coli KTE90]
gi|433196714|ref|ZP_20380652.1| Poly(A) polymerase [Escherichia coli KTE94]
gi|433206314|ref|ZP_20390023.1| Poly(A) polymerase [Escherichia coli KTE97]
gi|433211063|ref|ZP_20394687.1| Poly(A) polymerase [Escherichia coli KTE99]
gi|442594040|ref|ZP_21011963.1| Poly(A) polymerase [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442607326|ref|ZP_21022103.1| Poly(A) polymerase [Escherichia coli Nissle 1917]
gi|444922341|ref|ZP_21242105.1| poly(A) polymerase [Escherichia coli 09BKT078844]
gi|444928658|ref|ZP_21247830.1| poly(A) polymerase [Escherichia coli 99.0814]
gi|444934057|ref|ZP_21253021.1| poly(A) polymerase [Escherichia coli 99.0815]
gi|444939626|ref|ZP_21258296.1| poly(A) polymerase [Escherichia coli 99.0816]
gi|444945202|ref|ZP_21263640.1| poly(A) polymerase [Escherichia coli 99.0839]
gi|444950749|ref|ZP_21268993.1| poly(A) polymerase [Escherichia coli 99.0848]
gi|444956223|ref|ZP_21274247.1| poly(A) polymerase [Escherichia coli 99.1753]
gi|444961509|ref|ZP_21279284.1| poly(A) polymerase [Escherichia coli 99.1775]
gi|444967285|ref|ZP_21284771.1| poly(A) polymerase [Escherichia coli 99.1793]
gi|444972790|ref|ZP_21290094.1| poly(A) polymerase [Escherichia coli 99.1805]
gi|444978300|ref|ZP_21295308.1| poly(A) polymerase [Escherichia coli ATCC 700728]
gi|444983621|ref|ZP_21300497.1| poly(A) polymerase [Escherichia coli PA11]
gi|444988863|ref|ZP_21305614.1| poly(A) polymerase [Escherichia coli PA19]
gi|444994176|ref|ZP_21310787.1| poly(A) polymerase [Escherichia coli PA13]
gi|444999691|ref|ZP_21316166.1| poly(A) polymerase [Escherichia coli PA2]
gi|445005152|ref|ZP_21321506.1| poly(A) polymerase [Escherichia coli PA47]
gi|445010332|ref|ZP_21326538.1| poly(A) polymerase [Escherichia coli PA48]
gi|445016094|ref|ZP_21332155.1| poly(A) polymerase [Escherichia coli PA8]
gi|445021567|ref|ZP_21337501.1| poly(A) polymerase [Escherichia coli 7.1982]
gi|445026809|ref|ZP_21342598.1| poly(A) polymerase [Escherichia coli 99.1781]
gi|445032284|ref|ZP_21347922.1| poly(A) polymerase [Escherichia coli 99.1762]
gi|445037980|ref|ZP_21353463.1| poly(A) polymerase [Escherichia coli PA35]
gi|445043151|ref|ZP_21358500.1| poly(A) polymerase [Escherichia coli 3.4880]
gi|445048803|ref|ZP_21363986.1| poly(A) polymerase [Escherichia coli 95.0083]
gi|445054423|ref|ZP_21369385.1| poly(A) polymerase [Escherichia coli 99.0670]
gi|25389668|pir||C90647 poly(A) polymerase I [imported] - Escherichia coli (strain O157:H7,
substrain RIMD 0509952)
gi|13359603|dbj|BAB33570.1| poly(A) polymerase I [Escherichia coli O157:H7 str. Sakai]
gi|73854241|gb|AAZ86948.1| poly(A) polymerase I [Shigella sonnei Ss046]
gi|115511554|gb|ABI99628.1| poly(A) polymerase I [Escherichia coli APEC O1]
gi|170518042|gb|ACB16220.1| poly(A) polymerase [Escherichia coli SMS-3-5]
gi|187428215|gb|ACD07489.1| poly(A) polymerase [Shigella boydii CDC 3083-94]
gi|188014580|gb|EDU52702.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4113]
gi|188488673|gb|EDU63776.1| poly(A) polymerase [Escherichia coli 53638]
gi|189000464|gb|EDU69450.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4076]
gi|189356985|gb|EDU75404.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4401]
gi|189360734|gb|EDU79153.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4486]
gi|189365327|gb|EDU83743.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4501]
gi|189371104|gb|EDU89520.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC869]
gi|189376394|gb|EDU94810.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC508]
gi|190903587|gb|EDV63304.1| poly(A) polymerase [Escherichia coli B7A]
gi|190906921|gb|EDV66523.1| poly(A) polymerase [Escherichia coli F11]
gi|192931074|gb|EDV83677.1| poly(A) polymerase [Escherichia coli E22]
gi|194413654|gb|EDX29934.1| poly(A) polymerase [Escherichia coli B171]
gi|194418322|gb|EDX34412.1| poly(A) polymerase [Shigella dysenteriae 1012]
gi|208726943|gb|EDZ76544.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4206]
gi|208735864|gb|EDZ84551.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4045]
gi|208741461|gb|EDZ89143.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4042]
gi|209159937|gb|ACI37370.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4115]
gi|209746094|gb|ACI71354.1| poly(A) polymerase I [Escherichia coli]
gi|209746096|gb|ACI71355.1| poly(A) polymerase I [Escherichia coli]
gi|209746098|gb|ACI71356.1| poly(A) polymerase I [Escherichia coli]
gi|209746100|gb|ACI71357.1| poly(A) polymerase I [Escherichia coli]
gi|209746102|gb|ACI71358.1| poly(A) polymerase I [Escherichia coli]
gi|215263375|emb|CAS07694.1| poly(A) polymerase I [Escherichia coli O127:H6 str. E2348/69]
gi|217322438|gb|EEC30862.1| poly(A) polymerase [Escherichia coli O157:H7 str. TW14588]
gi|227838081|gb|EEJ48547.1| polynucleotide adenylyltransferase [Escherichia coli 83972]
gi|257757524|dbj|BAI29021.1| poly(A) polymerase I [Escherichia coli O103:H2 str. 12009]
gi|260450652|gb|ACX41074.1| poly(A) polymerase [Escherichia coli DH1]
gi|294490657|gb|ADE89413.1| poly(A) polymerase [Escherichia coli IHE3034]
gi|299878345|gb|EFI86556.1| polynucleotide adenylyltransferase [Escherichia coli MS 196-1]
gi|300298309|gb|EFJ54694.1| polynucleotide adenylyltransferase [Escherichia coli MS 185-1]
gi|300306620|gb|EFJ61140.1| polynucleotide adenylyltransferase [Escherichia coli MS 200-1]
gi|300317139|gb|EFJ66923.1| polynucleotide adenylyltransferase [Escherichia coli MS 175-1]
gi|300406499|gb|EFJ90037.1| polynucleotide adenylyltransferase [Escherichia coli MS 45-1]
gi|300450779|gb|EFK14399.1| polynucleotide adenylyltransferase [Escherichia coli MS 116-1]
gi|300456499|gb|EFK19992.1| polynucleotide adenylyltransferase [Escherichia coli MS 21-1]
gi|300531388|gb|EFK52450.1| polynucleotide adenylyltransferase [Escherichia coli MS 107-1]
gi|301075330|gb|EFK90136.1| polynucleotide adenylyltransferase [Escherichia coli MS 146-1]
gi|306908387|gb|EFN38885.1| poly(A) polymerase [Escherichia coli W]
gi|308120021|gb|EFO57283.1| polynucleotide adenylyltransferase [Escherichia coli MS 145-7]
gi|312289517|gb|EFR17411.1| poly(A) polymerase family protein [Escherichia coli 2362-75]
gi|315059363|gb|ADT73690.1| poly(A) polymerase I [Escherichia coli W]
gi|315134834|dbj|BAJ41993.1| poly(A) polymerase I [Escherichia coli DH1]
gi|315285223|gb|EFU44668.1| polynucleotide adenylyltransferase [Escherichia coli MS 110-3]
gi|315294623|gb|EFU53970.1| polynucleotide adenylyltransferase [Escherichia coli MS 153-1]
gi|315300716|gb|EFU59943.1| polynucleotide adenylyltransferase [Escherichia coli MS 16-3]
gi|315616374|gb|EFU96992.1| poly(A) polymerase family protein [Escherichia coli 3431]
gi|320177485|gb|EFW52481.1| Poly(A) polymerase [Shigella dysenteriae CDC 74-1112]
gi|320186563|gb|EFW61288.1| Poly(A) polymerase [Shigella flexneri CDC 796-83]
gi|320190332|gb|EFW64982.1| Poly(A) polymerase [Escherichia coli O157:H7 str. EC1212]
gi|320639950|gb|EFX09535.1| poly(A) polymerase I [Escherichia coli O157:H7 str. G5101]
gi|320647543|gb|EFX16338.1| poly(A) polymerase I [Escherichia coli O157:H- str. 493-89]
gi|320652877|gb|EFX21115.1| poly(A) polymerase I [Escherichia coli O157:H- str. H 2687]
gi|320658265|gb|EFX25994.1| poly(A) polymerase I [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320663575|gb|EFX30859.1| poly(A) polymerase I [Escherichia coli O55:H7 str. USDA 5905]
gi|320668887|gb|EFX35682.1| poly(A) polymerase I [Escherichia coli O157:H7 str. LSU-61]
gi|323160155|gb|EFZ46115.1| poly(A) polymerase family protein [Escherichia coli E128010]
gi|323166039|gb|EFZ51819.1| poly(A) polymerase family protein [Shigella sonnei 53G]
gi|323181842|gb|EFZ67255.1| poly(A) polymerase family protein [Escherichia coli OK1357]
gi|323190462|gb|EFZ75737.1| poly(A) polymerase family protein [Escherichia coli RN587/1]
gi|323934984|gb|EGB31357.1| poly(A) polymerase [Escherichia coli E1520]
gi|323939892|gb|EGB36091.1| poly(A) polymerase [Escherichia coli E482]
gi|323945619|gb|EGB41668.1| poly(A) polymerase [Escherichia coli H120]
gi|323950857|gb|EGB46734.1| poly(A) polymerase [Escherichia coli H252]
gi|323955105|gb|EGB50880.1| poly(A) polymerase [Escherichia coli H263]
gi|323970690|gb|EGB65945.1| poly(A) polymerase [Escherichia coli TA007]
gi|324008275|gb|EGB77494.1| polynucleotide adenylyltransferase [Escherichia coli MS 57-2]
gi|324012201|gb|EGB81420.1| polynucleotide adenylyltransferase [Escherichia coli MS 60-1]
gi|324017792|gb|EGB87011.1| polynucleotide adenylyltransferase [Escherichia coli MS 117-3]
gi|324118493|gb|EGC12387.1| poly(A) polymerase [Escherichia coli E1167]
gi|326339802|gb|EGD63610.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1044]
gi|326345137|gb|EGD68880.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1125]
gi|331040343|gb|EGI12550.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H736]
gi|331051501|gb|EGI23550.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli M718]
gi|331052257|gb|EGI24296.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA206]
gi|331081749|gb|EGI52910.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H299]
gi|332095178|gb|EGJ00207.1| poly(A) polymerase family protein [Shigella boydii 5216-82]
gi|332097927|gb|EGJ02900.1| poly(A) polymerase family protein [Shigella dysenteriae 155-74]
gi|332098923|gb|EGJ03874.1| poly(A) polymerase family protein [Shigella boydii 3594-74]
gi|339413128|gb|AEJ54800.1| poly(A) polymerase family protein [Escherichia coli UMNF18]
gi|342926520|gb|EGU95242.1| polyA polymerase [Escherichia coli MS 79-10]
gi|345354739|gb|EGW86957.1| poly(A) polymerase family protein [Escherichia coli STEC_94C]
gi|345363203|gb|EGW95346.1| poly(A) polymerase family protein [Escherichia coli 3030-1]
gi|345366923|gb|EGW99012.1| poly(A) polymerase family protein [Escherichia coli STEC_DG131-3]
gi|345367127|gb|EGW99214.1| poly(A) polymerase family protein [Escherichia coli STEC_EH250]
gi|345368215|gb|EGX00222.1| poly(A) polymerase family protein [Escherichia coli STEC_MHI813]
gi|345384227|gb|EGX14096.1| poly(A) polymerase family protein [Escherichia coli G58-1]
gi|345387134|gb|EGX16962.1| poly(A) polymerase family protein [Escherichia coli STEC_H.1.8]
gi|345392138|gb|EGX21924.1| poly(A) polymerase family protein [Escherichia coli STEC_S1191]
gi|349736294|gb|AEQ11000.1| poly(A) polymerase I [Escherichia coli O7:K1 str. CE10]
gi|355353420|gb|EHG02587.1| poly(A) polymerase I [Escherichia coli cloneA_i1]
gi|371601955|gb|EHN90674.1| Poly(A) polymerase [Escherichia coli E101]
gi|371605301|gb|EHN93918.1| Poly(A) polymerase [Escherichia coli B093]
gi|371608338|gb|EHN96894.1| Poly(A) polymerase [Escherichia coli H397]
gi|377850535|gb|EHU15497.1| poly(A) polymerase I [Escherichia coli DEC1A]
gi|377851602|gb|EHU16547.1| poly(A) polymerase I [Escherichia coli DEC1C]
gi|377855231|gb|EHU20106.1| poly(A) polymerase I [Escherichia coli DEC1B]
gi|377865230|gb|EHU30022.1| poly(A) polymerase [Escherichia coli DEC1D]
gi|377867840|gb|EHU32594.1| poly(A) polymerase I [Escherichia coli DEC1E]
gi|377869307|gb|EHU34024.1| poly(A) polymerase [Escherichia coli DEC2A]
gi|377880893|gb|EHU45459.1| poly(A) polymerase I [Escherichia coli DEC2B]
gi|377884723|gb|EHU49231.1| poly(A) polymerase I [Escherichia coli DEC2D]
gi|377886353|gb|EHU50835.1| poly(A) polymerase I [Escherichia coli DEC2C]
gi|377887442|gb|EHU51919.1| poly(A) polymerase I [Escherichia coli DEC3A]
gi|377888818|gb|EHU53289.1| poly(A) polymerase I [Escherichia coli DEC3B]
gi|377899407|gb|EHU63755.1| poly(A) polymerase I [Escherichia coli DEC2E]
gi|377915420|gb|EHU79529.1| poly(A) polymerase I [Escherichia coli DEC3C]
gi|377919698|gb|EHU83736.1| poly(A) polymerase I [Escherichia coli DEC3D]
gi|377921884|gb|EHU85879.1| poly(A) polymerase I [Escherichia coli DEC3E]
gi|377922334|gb|EHU86326.1| poly(A) polymerase I [Escherichia coli DEC4A]
gi|377925832|gb|EHU89772.1| poly(A) polymerase I [Escherichia coli DEC4B]
gi|377933684|gb|EHU97528.1| poly(A) polymerase I [Escherichia coli DEC3F]
gi|377935901|gb|EHU99695.1| poly(A) polymerase I [Escherichia coli DEC4D]
gi|377936215|gb|EHV00009.1| poly(A) polymerase I [Escherichia coli DEC4C]
gi|377942669|gb|EHV06403.1| poly(A) polymerase I [Escherichia coli DEC4E]
gi|377953258|gb|EHV16839.1| poly(A) polymerase I [Escherichia coli DEC4F]
gi|377966818|gb|EHV30228.1| poly(A) polymerase I [Escherichia coli DEC5A]
gi|377974702|gb|EHV38029.1| poly(A) polymerase I [Escherichia coli DEC5B]
gi|377978905|gb|EHV42184.1| poly(A) polymerase [Escherichia coli DEC5E]
gi|377983610|gb|EHV46854.1| poly(A) polymerase I [Escherichia coli DEC5D]
gi|377983689|gb|EHV46931.1| poly(A) polymerase I [Escherichia coli DEC5C]
gi|378001027|gb|EHV64089.1| poly(A) polymerase [Escherichia coli DEC6A]
gi|378002458|gb|EHV65509.1| poly(A) polymerase I [Escherichia coli DEC6B]
gi|378004394|gb|EHV67417.1| poly(A) polymerase [Escherichia coli DEC6C]
gi|378016068|gb|EHV78958.1| poly(A) polymerase [Escherichia coli DEC6D]
gi|378017553|gb|EHV80425.1| poly(A) polymerase I [Escherichia coli DEC6E]
gi|378123584|gb|EHW85002.1| poly(A) polymerase I [Escherichia coli DEC11A]
gi|378135165|gb|EHW96478.1| poly(A) polymerase I [Escherichia coli DEC10E]
gi|378137361|gb|EHW98644.1| poly(A) polymerase I [Escherichia coli DEC11B]
gi|378158462|gb|EHX19487.1| poly(A) polymerase [Escherichia coli DEC11C]
gi|378162324|gb|EHX23289.1| poly(A) polymerase [Escherichia coli DEC11E]
gi|378176484|gb|EHX37290.1| poly(A) polymerase [Escherichia coli DEC12A]
gi|378176852|gb|EHX37657.1| poly(A) polymerase I [Escherichia coli DEC12B]
gi|378177885|gb|EHX38673.1| poly(A) polymerase [Escherichia coli DEC12C]
gi|378192574|gb|EHX53132.1| poly(A) polymerase I [Escherichia coli DEC12D]
gi|378194425|gb|EHX54940.1| poly(A) polymerase I [Escherichia coli DEC12E]
gi|378223363|gb|EHX83587.1| poly(A) polymerase [Escherichia coli DEC14A]
gi|378227540|gb|EHX87710.1| poly(A) polymerase I [Escherichia coli DEC14B]
gi|378235503|gb|EHX95573.1| poly(A) polymerase I [Escherichia coli DEC14C]
gi|378237925|gb|EHX97939.1| poly(A) polymerase I [Escherichia coli DEC14D]
gi|383390169|gb|AFH15127.1| poly(A) polymerase I [Escherichia coli KO11FL]
gi|383403564|gb|AFH09807.1| poly(A) polymerase I [Escherichia coli W]
gi|384377812|gb|EIE35705.1| poly(A) polymerase I [Escherichia coli J53]
gi|384470114|gb|EIE54238.1| poly(A) polymerase I [Escherichia coli AI27]
gi|385540558|gb|EIF87379.1| Poly(A) polymerase [Escherichia coli M919]
gi|385713625|gb|EIG50556.1| Poly(A) polymerase [Escherichia coli H730]
gi|386123777|gb|EIG72366.1| Poly(A) polymerase [Escherichia sp. 4_1_40B]
gi|386159862|gb|EIH21676.1| polynucleotide adenylyltransferase [Escherichia coli 1.2264]
gi|386178230|gb|EIH55709.1| polynucleotide adenylyltransferase [Escherichia coli 3.2608]
gi|386185050|gb|EIH67786.1| polynucleotide adenylyltransferase [Escherichia coli 93.0624]
gi|386199601|gb|EIH98592.1| polynucleotide adenylyltransferase [Escherichia coli 96.154]
gi|386206648|gb|EII11154.1| polynucleotide adenylyltransferase [Escherichia coli 5.0959]
gi|386216440|gb|EII32929.1| polynucleotide adenylyltransferase [Escherichia coli 4.0967]
gi|386222846|gb|EII45260.1| polynucleotide adenylyltransferase [Escherichia coli 2.3916]
gi|386233674|gb|EII65654.1| polynucleotide adenylyltransferase [Escherichia coli 2.4168]
gi|386239287|gb|EII76217.1| polynucleotide adenylyltransferase [Escherichia coli 3.2303]
gi|386242782|gb|EII84517.1| polynucleotide adenylyltransferase [Escherichia coli 3003]
gi|386248871|gb|EII95043.1| polynucleotide adenylyltransferase [Escherichia coli TW07793]
gi|386252420|gb|EIJ02112.1| polynucleotide adenylyltransferase [Escherichia coli B41]
gi|388391215|gb|EIL52688.1| poly(A) polymerase I [Escherichia coli KD1]
gi|388397156|gb|EIL58190.1| poly(A) polymerase I [Escherichia coli 541-15]
gi|388403357|gb|EIL63888.1| poly(A) polymerase I [Escherichia coli 541-1]
gi|388411177|gb|EIL71361.1| poly(A) polymerase I [Escherichia coli 75]
gi|388414746|gb|EIL74695.1| poly(A) polymerase I [Escherichia coli CUMT8]
gi|388422983|gb|EIL82532.1| poly(A) polymerase I [Escherichia coli HM605]
gi|390651597|gb|EIN29868.1| poly(A) polymerase I [Escherichia coli FRIK1996]
gi|390654219|gb|EIN32272.1| poly(A) polymerase I [Escherichia coli FDA517]
gi|390654513|gb|EIN32559.1| poly(A) polymerase I [Escherichia coli FDA505]
gi|390670975|gb|EIN47463.1| poly(A) polymerase I [Escherichia coli 93-001]
gi|390674898|gb|EIN51063.1| poly(A) polymerase I [Escherichia coli FRIK1990]
gi|390676365|gb|EIN52471.1| poly(A) polymerase I [Escherichia coli FRIK1985]
gi|390690014|gb|EIN64916.1| poly(A) polymerase I [Escherichia coli PA3]
gi|390693809|gb|EIN68426.1| poly(A) polymerase I [Escherichia coli PA9]
gi|390694771|gb|EIN69329.1| poly(A) polymerase I [Escherichia coli PA5]
gi|390709594|gb|EIN82676.1| poly(A) polymerase I [Escherichia coli PA10]
gi|390712030|gb|EIN84988.1| poly(A) polymerase I [Escherichia coli PA15]
gi|390715169|gb|EIN88036.1| poly(A) polymerase I [Escherichia coli PA14]
gi|390716691|gb|EIN89486.1| poly(A) polymerase I [Escherichia coli PA25]
gi|390721793|gb|EIN94487.1| poly(A) polymerase I [Escherichia coli PA22]
gi|390735048|gb|EIO06477.1| poly(A) polymerase I [Escherichia coli PA24]
gi|390738317|gb|EIO09535.1| poly(A) polymerase I [Escherichia coli PA28]
gi|390753228|gb|EIO22951.1| poly(A) polymerase I [Escherichia coli PA31]
gi|390753688|gb|EIO23365.1| poly(A) polymerase I [Escherichia coli PA32]
gi|390758146|gb|EIO27614.1| poly(A) polymerase I [Escherichia coli PA33]
gi|390763404|gb|EIO32653.1| poly(A) polymerase I [Escherichia coli PA40]
gi|390777284|gb|EIO45128.1| poly(A) polymerase I [Escherichia coli PA41]
gi|390778260|gb|EIO46018.1| poly(A) polymerase I [Escherichia coli TW06591]
gi|390781184|gb|EIO48868.1| poly(A) polymerase I [Escherichia coli PA42]
gi|390788081|gb|EIO55551.1| poly(A) polymerase I [Escherichia coli PA39]
gi|390796432|gb|EIO63708.1| poly(A) polymerase I [Escherichia coli TW10246]
gi|390802891|gb|EIO69920.1| poly(A) polymerase I [Escherichia coli TW11039]
gi|390812177|gb|EIO78860.1| poly(A) polymerase I [Escherichia coli TW07945]
gi|390812685|gb|EIO79361.1| poly(A) polymerase I [Escherichia coli TW09109]
gi|390820425|gb|EIO86731.1| poly(A) polymerase I [Escherichia coli TW10119]
gi|390824946|gb|EIO90895.1| poly(A) polymerase I [Escherichia coli TW09098]
gi|390838058|gb|EIP02376.1| poly(A) polymerase I [Escherichia coli EC4203]
gi|390841088|gb|EIP05059.1| poly(A) polymerase I [Escherichia coli EC4196]
gi|390845179|gb|EIP08855.1| poly(A) polymerase I [Escherichia coli TW09195]
gi|390856657|gb|EIP19228.1| poly(A) polymerase I [Escherichia coli TW14301]
gi|390861528|gb|EIP23776.1| poly(A) polymerase I [Escherichia coli EC4421]
gi|390862656|gb|EIP24831.1| poly(A) polymerase I [Escherichia coli TW14313]
gi|390872567|gb|EIP33856.1| poly(A) polymerase I [Escherichia coli EC4422]
gi|390877778|gb|EIP38673.1| poly(A) polymerase I [Escherichia coli EC4013]
gi|390887408|gb|EIP47384.1| poly(A) polymerase I [Escherichia coli EC4402]
gi|390888976|gb|EIP48758.1| poly(A) polymerase I [Escherichia coli EC4439]
gi|390896441|gb|EIP55831.1| poly(A) polymerase I [Escherichia coli EC4436]
gi|390904491|gb|EIP63487.1| poly(A) polymerase I [Escherichia coli EC1738]
gi|390912570|gb|EIP71222.1| poly(A) polymerase I [Escherichia coli EC4437]
gi|390912933|gb|EIP71579.1| poly(A) polymerase I [Escherichia coli EC1734]
gi|390914267|gb|EIP72811.1| poly(A) polymerase I [Escherichia coli EC1863]
gi|390917707|gb|EIP76124.1| poly(A) polymerase I [Escherichia coli EC4448]
gi|390926714|gb|EIP84273.1| poly(A) polymerase I [Escherichia coli EC1845]
gi|391258074|gb|EIQ17181.1| poly(A) polymerase [Shigella flexneri CCH060]
gi|391268580|gb|EIQ27505.1| poly(A) polymerase [Shigella flexneri K-315]
gi|391277015|gb|EIQ35776.1| poly(A) polymerase [Shigella boydii 965-58]
gi|391289850|gb|EIQ48334.1| poly(A) polymerase [Shigella boydii 4444-74]
gi|391290215|gb|EIQ48690.1| poly(A) polymerase [Shigella sonnei 3233-85]
gi|391290291|gb|EIQ48764.1| poly(A) polymerase [Shigella sonnei 3226-85]
gi|391297327|gb|EIQ55381.1| poly(A) polymerase I [Shigella sonnei 4822-66]
gi|391315706|gb|EIQ73230.1| poly(A) polymerase I [Escherichia coli EPEC C342-62]
gi|397782750|gb|EJK93618.1| poly(A) polymerase family protein [Escherichia coli STEC_O31]
gi|397903798|gb|EJL20093.1| poly(A) polymerase I [Shigella sonnei str. Moseley]
gi|404293049|gb|EEH72669.2| Poly(A) polymerase [Escherichia sp. 1_1_43]
gi|404334724|gb|EJZ61202.1| poly(A) polymerase I [Shigella flexneri 1485-80]
gi|408073634|gb|EKH07943.1| poly(A) polymerase I [Escherichia coli PA7]
gi|408077369|gb|EKH11577.1| poly(A) polymerase I [Escherichia coli FRIK920]
gi|408087382|gb|EKH20831.1| poly(A) polymerase I [Escherichia coli PA34]
gi|408091985|gb|EKH25184.1| poly(A) polymerase I [Escherichia coli FDA506]
gi|408097726|gb|EKH30609.1| poly(A) polymerase I [Escherichia coli FDA507]
gi|408103907|gb|EKH36236.1| poly(A) polymerase I [Escherichia coli FDA504]
gi|408111337|gb|EKH43088.1| poly(A) polymerase I [Escherichia coli FRIK1999]
gi|408117444|gb|EKH48629.1| poly(A) polymerase I [Escherichia coli FRIK1997]
gi|408123140|gb|EKH53942.1| poly(A) polymerase I [Escherichia coli NE1487]
gi|408131394|gb|EKH61436.1| poly(A) polymerase I [Escherichia coli NE037]
gi|408133059|gb|EKH62976.1| poly(A) polymerase I [Escherichia coli FRIK2001]
gi|408142296|gb|EKH71677.1| poly(A) polymerase [Escherichia coli PA4]
gi|408150977|gb|EKH79495.1| poly(A) polymerase I [Escherichia coli PA23]
gi|408154700|gb|EKH83031.1| poly(A) polymerase I [Escherichia coli PA49]
gi|408159768|gb|EKH87820.1| poly(A) polymerase I [Escherichia coli PA45]
gi|408168032|gb|EKH95485.1| poly(A) polymerase I [Escherichia coli TT12B]
gi|408173819|gb|EKI00822.1| poly(A) polymerase I [Escherichia coli MA6]
gi|408175693|gb|EKI02591.1| poly(A) polymerase I [Escherichia coli 5905]
gi|408188008|gb|EKI13897.1| poly(A) polymerase I [Escherichia coli CB7326]
gi|408193740|gb|EKI19258.1| poly(A) polymerase I [Escherichia coli 5412]
gi|408194059|gb|EKI19559.1| poly(A) polymerase I [Escherichia coli EC96038]
gi|408200382|gb|EKI25563.1| poly(A) polymerase I [Escherichia coli TW15901]
gi|408206909|gb|EKI31675.1| poly(A) polymerase I [Escherichia coli TW00353]
gi|408207652|gb|EKI32370.1| poly(A) polymerase I [Escherichia coli ARS4.2123]
gi|408222062|gb|EKI45969.1| poly(A) polymerase I [Escherichia coli 07798]
gi|408232705|gb|EKI55873.1| poly(A) polymerase I [Escherichia coli N1]
gi|408234500|gb|EKI57513.1| poly(A) polymerase I [Escherichia coli PA38]
gi|408240910|gb|EKI63561.1| poly(A) polymerase I [Escherichia coli EC1735]
gi|408250379|gb|EKI72239.1| poly(A) polymerase I [Escherichia coli EC1736]
gi|408254627|gb|EKI76130.1| poly(A) polymerase I [Escherichia coli EC1737]
gi|408260930|gb|EKI81979.1| poly(A) polymerase I [Escherichia coli EC1846]
gi|408269540|gb|EKI89785.1| poly(A) polymerase I [Escherichia coli EC1847]
gi|408271453|gb|EKI91580.1| poly(A) polymerase I [Escherichia coli EC1848]
gi|408280414|gb|EKI99966.1| poly(A) polymerase I [Escherichia coli EC1849]
gi|408286205|gb|EKJ05133.1| poly(A) polymerase I [Escherichia coli EC1850]
gi|408289557|gb|EKJ08315.1| poly(A) polymerase I [Escherichia coli EC1856]
gi|408301831|gb|EKJ19392.1| poly(A) polymerase I [Escherichia coli EC1862]
gi|408302266|gb|EKJ19801.1| poly(A) polymerase I [Escherichia coli EC1864]
gi|408303260|gb|EKJ20726.1| poly(A) polymerase I [Escherichia coli EC1866]
gi|408319649|gb|EKJ35768.1| poly(A) polymerase I [Escherichia coli EC1868]
gi|408320261|gb|EKJ36364.1| poly(A) polymerase I [Escherichia coli EC1870]
gi|408332501|gb|EKJ47536.1| poly(A) polymerase I [Escherichia coli EC1869]
gi|408338299|gb|EKJ52947.1| poly(A) polymerase I [Escherichia coli NE098]
gi|408351277|gb|EKJ65068.1| poly(A) polymerase I [Escherichia coli FRIK523]
gi|408353669|gb|EKJ67164.1| poly(A) polymerase I [Escherichia coli 0.1304]
gi|408560655|gb|EKK36918.1| poly(A) polymerase [Escherichia coli 5.2239]
gi|408560945|gb|EKK37193.1| poly(A) polymerase [Escherichia coli 3.4870]
gi|408561562|gb|EKK37765.1| poly(A) polymerase [Escherichia coli 6.0172]
gi|408586211|gb|EKK60994.1| poly(A) polymerase [Escherichia coli 8.0586]
gi|408592143|gb|EKK66536.1| poly(A) polymerase [Escherichia coli 8.2524]
gi|408593894|gb|EKK68202.1| poly(A) polymerase [Escherichia coli 10.0833]
gi|408605646|gb|EKK79140.1| poly(A) polymerase [Escherichia coli 10.0869]
gi|408606354|gb|EKK79801.1| poly(A) polymerase [Escherichia coli 8.0416]
gi|408613990|gb|EKK87275.1| poly(A) polymerase [Escherichia coli 88.0221]
gi|408618355|gb|EKK91442.1| poly(A) polymerase [Escherichia coli 10.0821]
gi|427215849|gb|EKV85015.1| poly(A) polymerase [Escherichia coli 88.1042]
gi|427219290|gb|EKV88259.1| poly(A) polymerase [Escherichia coli 89.0511]
gi|427219540|gb|EKV88502.1| poly(A) polymerase [Escherichia coli 88.1467]
gi|427235245|gb|EKW02867.1| poly(A) polymerase [Escherichia coli 90.0039]
gi|427235493|gb|EKW03114.1| poly(A) polymerase [Escherichia coli 90.2281]
gi|427237996|gb|EKW05518.1| poly(A) polymerase [Escherichia coli 90.0091]
gi|427252376|gb|EKW18865.1| poly(A) polymerase [Escherichia coli 93.0056]
gi|427254169|gb|EKW20537.1| poly(A) polymerase [Escherichia coli 93.0055]
gi|427255257|gb|EKW21528.1| poly(A) polymerase [Escherichia coli 94.0618]
gi|427271723|gb|EKW36514.1| poly(A) polymerase [Escherichia coli 95.0943]
gi|427272272|gb|EKW37025.1| poly(A) polymerase [Escherichia coli 95.0183]
gi|427278520|gb|EKW42977.1| poly(A) polymerase [Escherichia coli 95.1288]
gi|427287252|gb|EKW51020.1| poly(A) polymerase [Escherichia coli 96.0428]
gi|427293403|gb|EKW56657.1| poly(A) polymerase [Escherichia coli 96.0427]
gi|427294982|gb|EKW58136.1| poly(A) polymerase [Escherichia coli 96.0939]
gi|427305681|gb|EKW68275.1| poly(A) polymerase [Escherichia coli 97.0003]
gi|427307864|gb|EKW70288.1| poly(A) polymerase [Escherichia coli 96.0932]
gi|427312417|gb|EKW74573.1| poly(A) polymerase [Escherichia coli 96.0107]
gi|427322983|gb|EKW84600.1| poly(A) polymerase [Escherichia coli 97.1742]
gi|427323565|gb|EKW85126.1| poly(A) polymerase [Escherichia coli 97.0007]
gi|427335489|gb|EKW96519.1| poly(A) polymerase [Escherichia coli 99.0713]
gi|427335890|gb|EKW96919.1| poly(A) polymerase [Escherichia coli 99.0678]
gi|427337347|gb|EKW98265.1| poly(A) polymerase [Escherichia coli 99.0672]
gi|429260829|gb|EKY44360.1| poly(A) polymerase [Escherichia coli 96.0109]
gi|429262254|gb|EKY45597.1| poly(A) polymerase [Escherichia coli 97.0010]
gi|430880095|gb|ELC03416.1| Poly(A) polymerase [Escherichia coli KTE4]
gi|430881109|gb|ELC04371.1| Poly(A) polymerase [Escherichia coli KTE5]
gi|430889796|gb|ELC12456.1| Poly(A) polymerase [Escherichia coli KTE10]
gi|430901924|gb|ELC23820.1| Poly(A) polymerase [Escherichia coli KTE15]
gi|430911058|gb|ELC32356.1| Poly(A) polymerase [Escherichia coli KTE16]
gi|430919015|gb|ELC39966.1| Poly(A) polymerase [Escherichia coli KTE25]
gi|430933253|gb|ELC53664.1| Poly(A) polymerase [Escherichia coli KTE28]
gi|430938865|gb|ELC59090.1| Poly(A) polymerase [Escherichia coli KTE39]
gi|430944520|gb|ELC64613.1| Poly(A) polymerase [Escherichia coli KTE44]
gi|430957610|gb|ELC76262.1| Poly(A) polymerase [Escherichia coli KTE187]
gi|430968178|gb|ELC85411.1| Poly(A) polymerase [Escherichia coli KTE188]
gi|430969888|gb|ELC86981.1| Poly(A) polymerase [Escherichia coli KTE189]
gi|430975492|gb|ELC92387.1| Poly(A) polymerase [Escherichia coli KTE193]
gi|430976715|gb|ELC93573.1| Poly(A) polymerase [Escherichia coli KTE191]
gi|430986855|gb|ELD03421.1| Poly(A) polymerase [Escherichia coli KTE201]
gi|431001455|gb|ELD17038.1| Poly(A) polymerase [Escherichia coli KTE206]
gi|431011606|gb|ELD25681.1| Poly(A) polymerase [Escherichia coli KTE210]
gi|431029746|gb|ELD42777.1| Poly(A) polymerase [Escherichia coli KTE214]
gi|431032520|gb|ELD45230.1| Poly(A) polymerase [Escherichia coli KTE220]
gi|431045472|gb|ELD55705.1| Poly(A) polymerase [Escherichia coli KTE224]
gi|431055626|gb|ELD65165.1| Poly(A) polymerase [Escherichia coli KTE230]
gi|431087881|gb|ELD93802.1| Poly(A) polymerase [Escherichia coli KTE47]
gi|431101027|gb|ELE05996.1| Poly(A) polymerase [Escherichia coli KTE51]
gi|431123096|gb|ELE25839.1| Poly(A) polymerase [Escherichia coli KTE57]
gi|431124375|gb|ELE27021.1| Poly(A) polymerase [Escherichia coli KTE58]
gi|431133708|gb|ELE35675.1| Poly(A) polymerase [Escherichia coli KTE60]
gi|431134639|gb|ELE36588.1| Poly(A) polymerase [Escherichia coli KTE62]
gi|431142278|gb|ELE44028.1| Poly(A) polymerase [Escherichia coli KTE67]
gi|431152481|gb|ELE53432.1| Poly(A) polymerase [Escherichia coli KTE72]
gi|431158654|gb|ELE59252.1| Poly(A) polymerase [Escherichia coli KTE75]
gi|431166054|gb|ELE66381.1| Poly(A) polymerase [Escherichia coli KTE77]
gi|431174728|gb|ELE74764.1| Poly(A) polymerase [Escherichia coli KTE81]
gi|431185557|gb|ELE85286.1| Poly(A) polymerase [Escherichia coli KTE86]
gi|431194800|gb|ELE94015.1| Poly(A) polymerase [Escherichia coli KTE87]
gi|431196235|gb|ELE95180.1| Poly(A) polymerase [Escherichia coli KTE93]
gi|431225513|gb|ELF22713.1| Poly(A) polymerase [Escherichia coli KTE143]
gi|431225941|gb|ELF23127.1| Poly(A) polymerase [Escherichia coli KTE156]
gi|431232600|gb|ELF28266.1| Poly(A) polymerase [Escherichia coli KTE161]
gi|431247640|gb|ELF41861.1| Poly(A) polymerase [Escherichia coli KTE169]
gi|431248087|gb|ELF42296.1| Poly(A) polymerase [Escherichia coli KTE171]
gi|431260376|gb|ELF52474.1| Poly(A) polymerase [Escherichia coli KTE8]
gi|431268954|gb|ELF60315.1| Poly(A) polymerase [Escherichia coli KTE17]
gi|431277399|gb|ELF68413.1| Poly(A) polymerase [Escherichia coli KTE18]
gi|431278880|gb|ELF69853.1| Poly(A) polymerase [Escherichia coli KTE45]
gi|431287291|gb|ELF78109.1| Poly(A) polymerase [Escherichia coli KTE23]
gi|431287878|gb|ELF78664.1| Poly(A) polymerase [Escherichia coli KTE42]
gi|431291628|gb|ELF82131.1| Poly(A) polymerase [Escherichia coli KTE29]
gi|431296443|gb|ELF86155.1| Poly(A) polymerase [Escherichia coli KTE43]
gi|431297560|gb|ELF87210.1| Poly(A) polymerase [Escherichia coli KTE22]
gi|431302369|gb|ELF91555.1| Poly(A) polymerase [Escherichia coli KTE46]
gi|431331662|gb|ELG18908.1| Poly(A) polymerase [Escherichia coli KTE59]
gi|431332925|gb|ELG20146.1| Poly(A) polymerase [Escherichia coli KTE63]
gi|431333740|gb|ELG20925.1| Poly(A) polymerase [Escherichia coli KTE65]
gi|431351367|gb|ELG38154.1| Poly(A) polymerase [Escherichia coli KTE84]
gi|431352000|gb|ELG38786.1| Poly(A) polymerase [Escherichia coli KTE91]
gi|431371254|gb|ELG57039.1| Poly(A) polymerase [Escherichia coli KTE118]
gi|431375008|gb|ELG60352.1| Poly(A) polymerase [Escherichia coli KTE123]
gi|431380784|gb|ELG65423.1| Poly(A) polymerase [Escherichia coli KTE135]
gi|431398173|gb|ELG81596.1| Poly(A) polymerase [Escherichia coli KTE141]
gi|431408691|gb|ELG91874.1| Poly(A) polymerase [Escherichia coli KTE146]
gi|431426137|gb|ELH08182.1| Poly(A) polymerase [Escherichia coli KTE165]
gi|431430960|gb|ELH12739.1| Poly(A) polymerase [Escherichia coli KTE192]
gi|431438574|gb|ELH19948.1| Poly(A) polymerase [Escherichia coli KTE194]
gi|431456440|gb|ELH36784.1| Poly(A) polymerase [Escherichia coli KTE183]
gi|431457414|gb|ELH37753.1| Poly(A) polymerase [Escherichia coli KTE184]
gi|431464640|gb|ELH44759.1| Poly(A) polymerase [Escherichia coli KTE196]
gi|431472525|gb|ELH52413.1| Poly(A) polymerase [Escherichia coli KTE197]
gi|431475646|gb|ELH55450.1| Poly(A) polymerase [Escherichia coli KTE203]
gi|431483807|gb|ELH63496.1| Poly(A) polymerase [Escherichia coli KTE209]
gi|431487723|gb|ELH67367.1| Poly(A) polymerase [Escherichia coli KTE207]
gi|431499985|gb|ELH79002.1| Poly(A) polymerase [Escherichia coli KTE217]
gi|431507933|gb|ELH86215.1| Poly(A) polymerase [Escherichia coli KTE215]
gi|431511639|gb|ELH89770.1| Poly(A) polymerase [Escherichia coli KTE218]
gi|431516130|gb|ELH93744.1| Poly(A) polymerase [Escherichia coli KTE223]
gi|431518637|gb|ELH96091.1| Poly(A) polymerase [Escherichia coli KTE227]
gi|431519105|gb|ELH96557.1| Poly(A) polymerase [Escherichia coli KTE229]
gi|431527940|gb|ELI04654.1| Poly(A) polymerase [Escherichia coli KTE106]
gi|431536887|gb|ELI13043.1| Poly(A) polymerase [Escherichia coli KTE104]
gi|431546880|gb|ELI21267.1| Poly(A) polymerase [Escherichia coli KTE109]
gi|431557178|gb|ELI30952.1| Poly(A) polymerase [Escherichia coli KTE113]
gi|431561284|gb|ELI34668.1| Poly(A) polymerase [Escherichia coli KTE117]
gi|431561485|gb|ELI34854.1| Poly(A) polymerase [Escherichia coli KTE112]
gi|431574037|gb|ELI46822.1| Poly(A) polymerase [Escherichia coli KTE120]
gi|431575410|gb|ELI48145.1| Poly(A) polymerase [Escherichia coli KTE124]
gi|431603297|gb|ELI72723.1| Poly(A) polymerase [Escherichia coli KTE131]
gi|431607301|gb|ELI76671.1| Poly(A) polymerase [Escherichia coli KTE133]
gi|431610699|gb|ELI79984.1| Poly(A) polymerase [Escherichia coli KTE137]
gi|431624006|gb|ELI92630.1| Poly(A) polymerase [Escherichia coli KTE145]
gi|431633482|gb|ELJ01762.1| Poly(A) polymerase [Escherichia coli KTE150]
gi|431637608|gb|ELJ05663.1| Poly(A) polymerase [Escherichia coli KTE153]
gi|431650444|gb|ELJ17765.1| Poly(A) polymerase [Escherichia coli KTE157]
gi|431650954|gb|ELJ18261.1| Poly(A) polymerase [Escherichia coli KTE160]
gi|431665844|gb|ELJ32553.1| Poly(A) polymerase [Escherichia coli KTE167]
gi|431668023|gb|ELJ34599.1| Poly(A) polymerase [Escherichia coli KTE168]
gi|431679094|gb|ELJ45010.1| Poly(A) polymerase [Escherichia coli KTE176]
gi|431679226|gb|ELJ45139.1| Poly(A) polymerase [Escherichia coli KTE174]
gi|431693317|gb|ELJ58733.1| Poly(A) polymerase [Escherichia coli KTE179]
gi|431695126|gb|ELJ60462.1| Poly(A) polymerase [Escherichia coli KTE180]
gi|431699535|gb|ELJ64540.1| Poly(A) polymerase [Escherichia coli KTE88]
gi|431723755|gb|ELJ87700.1| Poly(A) polymerase [Escherichia coli KTE90]
gi|431726612|gb|ELJ90420.1| Poly(A) polymerase [Escherichia coli KTE94]
gi|431733913|gb|ELJ97316.1| Poly(A) polymerase [Escherichia coli KTE97]
gi|431736486|gb|ELJ99811.1| Poly(A) polymerase [Escherichia coli KTE99]
gi|441605865|emb|CCP97243.1| Poly(A) polymerase [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441711466|emb|CCQ08080.1| Poly(A) polymerase [Escherichia coli Nissle 1917]
gi|444543468|gb|ELV22730.1| poly(A) polymerase [Escherichia coli 99.0814]
gi|444552171|gb|ELV30014.1| poly(A) polymerase [Escherichia coli 09BKT078844]
gi|444552561|gb|ELV30348.1| poly(A) polymerase [Escherichia coli 99.0815]
gi|444566167|gb|ELV43003.1| poly(A) polymerase [Escherichia coli 99.0839]
gi|444568441|gb|ELV45116.1| poly(A) polymerase [Escherichia coli 99.0816]
gi|444572991|gb|ELV49392.1| poly(A) polymerase [Escherichia coli 99.0848]
gi|444583631|gb|ELV59327.1| poly(A) polymerase [Escherichia coli 99.1753]
gi|444586644|gb|ELV62134.1| poly(A) polymerase [Escherichia coli 99.1775]
gi|444587255|gb|ELV62725.1| poly(A) polymerase [Escherichia coli 99.1793]
gi|444601086|gb|ELV75895.1| poly(A) polymerase [Escherichia coli ATCC 700728]
gi|444601417|gb|ELV76224.1| poly(A) polymerase [Escherichia coli PA11]
gi|444610027|gb|ELV84463.1| poly(A) polymerase [Escherichia coli 99.1805]
gi|444616149|gb|ELV90319.1| poly(A) polymerase [Escherichia coli PA13]
gi|444616557|gb|ELV90719.1| poly(A) polymerase [Escherichia coli PA19]
gi|444625192|gb|ELV99063.1| poly(A) polymerase [Escherichia coli PA2]
gi|444633736|gb|ELW07239.1| poly(A) polymerase [Escherichia coli PA48]
gi|444634060|gb|ELW07551.1| poly(A) polymerase [Escherichia coli PA47]
gi|444639362|gb|ELW12681.1| poly(A) polymerase [Escherichia coli PA8]
gi|444649158|gb|ELW22064.1| poly(A) polymerase [Escherichia coli 7.1982]
gi|444651319|gb|ELW24128.1| poly(A) polymerase [Escherichia coli 99.1781]
gi|444655346|gb|ELW27965.1| poly(A) polymerase [Escherichia coli 99.1762]
gi|444664524|gb|ELW36712.1| poly(A) polymerase [Escherichia coli PA35]
gi|444668807|gb|ELW40807.1| poly(A) polymerase [Escherichia coli 3.4880]
gi|444673706|gb|ELW45332.1| poly(A) polymerase [Escherichia coli 95.0083]
gi|444675148|gb|ELW46629.1| poly(A) polymerase [Escherichia coli 99.0670]
Length = 454
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|416342953|ref|ZP_11676957.1| Poly(A) polymerase [Escherichia coli EC4100B]
gi|320200334|gb|EFW74920.1| Poly(A) polymerase [Escherichia coli EC4100B]
Length = 454
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPAITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|432677740|ref|ZP_19913170.1| Poly(A) polymerase [Escherichia coli KTE142]
gi|431207922|gb|ELF06152.1| Poly(A) polymerase [Escherichia coli KTE142]
Length = 454
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 155/340 (45%), Gaps = 37/340 (10%)
Query: 46 QEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDF 105
Q V + + I+R I + + V+ L G++A+LVGG VRDLLL + PKDF
Sbjct: 11 QAVALPQVTVIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDF 70
Query: 106 DVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------- 155
DV T A +Q+R+ F ++GRRF + V +IEV++F H E
Sbjct: 71 DVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQ 127
Query: 156 -GKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKL 214
G+ +LL +G E D R RDFTINSL++ + DY G+ DL+ +
Sbjct: 128 RGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVI 181
Query: 215 RTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNY 274
R + + ED R+LR +R AA+LG+ + + L++ + + +R+ E
Sbjct: 182 RLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLK 241
Query: 275 MLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVS 332
+L G + LL Y+L + L P Y + ++PM ++ ++ N D +
Sbjct: 242 LLQAGYGYDTYKLLCEYHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIH 296
Query: 333 CD---RPA---DYTLWVGLLSFHQALVSDP----QDAFVV 362
D PA W LL Q + + DAF +
Sbjct: 297 NDMRVNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFAL 336
>gi|320539917|ref|ZP_08039576.1| poly(A) polymerase I [Serratia symbiotica str. Tucson]
gi|320030103|gb|EFW12123.1| poly(A) polymerase I [Serratia symbiotica str. Tucson]
Length = 435
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 152/327 (46%), Gaps = 28/327 (8%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T+ I+R I + + VL L G+++YLVGG VRDLLL + PKDFD+ T A +
Sbjct: 3 TIPREQHSISRKDISENALKVLYRLNKSGYESYLVGGGVRDLLLGKKPKDFDITTNATPE 62
Query: 115 QIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF----ETVAKHG-----EGKETVLLSQI 165
Q+R+ F ++GRRF + V +IEV++F E ++ + + +LL
Sbjct: 63 QVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEQTPEYDKNSSQQAQNGMLLRDN 122
Query: 166 PYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFT 225
+G E D R RDFTINSL++ + DY NG+ DL+ +R + +
Sbjct: 123 IFGSIEEDAQR------RDFTINSLYYGVADFTLRDYVNGLRDLQQRVIRLIGDPETRYR 176
Query: 226 EDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285
ED R+LR +R AA+LG++ + + L+S + + +R+ E +L G +
Sbjct: 177 EDPVRMLRAVRFAAKLGMTISDETAEPIPRLASLLHEIPPARLFEESLKLLLAGYGYPTY 236
Query: 286 CLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD---RPA---DY 339
L Y L + L P A + + L++ N+D L+ PA
Sbjct: 237 LKLCEYQLFQPLFPLIARHFTPNHATLMERT---LVQALKNIDHLLQNSMGVTPAFLFAA 293
Query: 340 TLWVGLLSFHQALVSDP----QDAFVV 362
LW LL Q L + DAF +
Sbjct: 294 MLWHPLLEHAQKLAQESGLGYYDAFAL 320
>gi|119944355|ref|YP_942035.1| poly(A) polymerase [Psychromonas ingrahamii 37]
gi|119862959|gb|ABM02436.1| poly(A) polymerase [Psychromonas ingrahamii 37]
Length = 459
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 133/252 (52%), Gaps = 17/252 (6%)
Query: 57 DSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQI 116
+S NL +R I + + VL L + GF+A LVGG VRDLLL PKDFD+ T A +++
Sbjct: 22 ESHNL--SRKDIDENALKVLYRLHNAGFRALLVGGGVRDLLLGLKPKDFDITTNATPEEV 79
Query: 117 RRQFHRSEIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPY 167
+ F +IGRRF + + VIEV++F + K + K +LL Y
Sbjct: 80 KALFRNCRLIGRRFRLAHILFGREVIEVATFRGHHDDDNGQDAQKVKQSKAGMLLRDNVY 139
Query: 168 GCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
G E D R RDFT+N+L++D IYD+ NG+ DL+ +L + + + ED
Sbjct: 140 GSLEEDAER------RDFTVNALYYDIADFAIYDFCNGMKDLQERRLTLIGDPEVRYRED 193
Query: 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
R++R +R +A+L L+ ++ + L+ ++ + +R E+ +L G + L
Sbjct: 194 PVRMIRAIRFSAKLDLTISEECAEPIRRLAPLLQDIPAARHFDEVIKLLLSGQGLVTYRL 253
Query: 288 LRRYNLLKILLP 299
L+ Y LL++L P
Sbjct: 254 LKEYKLLQVLFP 265
>gi|347540792|ref|YP_004848217.1| poly(A) polymerase [Pseudogulbenkiania sp. NH8B]
gi|345643970|dbj|BAK77803.1| poly(A) polymerase [Pseudogulbenkiania sp. NH8B]
Length = 392
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 115/217 (52%), Gaps = 6/217 (2%)
Query: 93 VRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAK 152
+RDLLL PKDFDV T+A +Q+ F RS IIGRRF I V + IEV++F +
Sbjct: 1 MRDLLLDVNPKDFDVATSATPEQVHHLFRRSRIIGRRFKIVHVMVGPETIEVTTFRGGSI 60
Query: 153 HGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCL 212
+ +++ YG E D R RDFT+N+LF+DP I DY +G+ DL+
Sbjct: 61 DDTNETGRIMADNSYGSQEEDAHR------RDFTVNALFYDPSDESIVDYHHGVKDLQAR 114
Query: 213 KLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMEL 272
KL + + ED R+LR +R+AA+L ++ + + + +++ +R+ E+
Sbjct: 115 KLVMIGQPARRYQEDPVRMLRAVRLAAKLNFEIDENTRKPIRAHAHLLKKEPPARLFDEM 174
Query: 273 NYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
+L G A S +C LR L + + P A LD++
Sbjct: 175 LKLLMSGQAYSCLCKLREEGLSRGVFPLLDAVLDEEG 211
>gi|167622692|ref|YP_001672986.1| poly(A) polymerase [Shewanella halifaxensis HAW-EB4]
gi|167352714|gb|ABZ75327.1| poly(A) polymerase [Shewanella halifaxensis HAW-EB4]
Length = 430
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 144/296 (48%), Gaps = 19/296 (6%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + VL L GF+AYLVGG VRD+LL PKDFDV+T A ++I+R F
Sbjct: 7 AISRRQISDNAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATPEEIKRLFR 66
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF--------ETVAKHGEGKETVLLSQIPYGCDEID 173
++GRRF + + VIEV++ E ++K E LL YG + D
Sbjct: 67 NCRLVGRRFRLAHIVFGRDVIEVATLRGHHVDSEEKISKTNESGR--LLRDNVYGSIDED 124
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFT+N+L++D I+ Y G+ DL +R + + ED R+LR
Sbjct: 125 AER------RDFTVNALYYDISDFSIHSYGGGLQDLESRTIRLIGDPETRYREDPVRMLR 178
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L ++ + + L+ ++ + +R+ E+ + G A + ++R + L
Sbjct: 179 AVRFATKLDMTIEANAAKPIKGLARLLKDIPAARMYEEVLKLFFAGKALENFHMMREFGL 238
Query: 294 LKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLLSFH 349
+ L P A L + TA+ +L + + D+ V+ D+P + L ++
Sbjct: 239 FEPLFPQVEALLKEYPSGETAK---LLQEMMTSTDERVAQDKPVTPAFFYAALLWY 291
>gi|339478031|ref|YP_004706851.1| putative poly(A) polymerase I [Candidatus Moranella endobia PCIT]
gi|338172582|gb|AEI74983.1| putative poly(A) polymerase I [Candidatus Moranella endobia PCIT]
Length = 470
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 24/284 (8%)
Query: 49 DVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVI 108
+ SN+ + I+R I + + VL L G++AYLVGG VRDLLL + PKDFD+
Sbjct: 31 NCSNFVIIQRDQHSISRKEISENALKVLYRLNKAGYEAYLVGGGVRDLLLGQKPKDFDIT 90
Query: 109 TTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFE----------TVAKHGEGKE 158
T+A +Q+R+ F ++GRRF + V +IEV++F +
Sbjct: 91 TSATPEQMRKLFRNCRLVGRRFRLAHVMFGQEIIEVATFRGQHQVLKNEYSPGAALTSNN 150
Query: 159 TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLI 218
+LL +G E D R RDF++NSL++ + DY G+ DL+ +R L
Sbjct: 151 GMLLRDNIFGSIEEDAQR------RDFSVNSLYYSVADFTLRDYTGGLKDLQEGTIRLLG 204
Query: 219 PAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSY 278
+ + ED R+LR +R AA+L ++ ++ + L+ + + +R+ E +L
Sbjct: 205 DPEIRYREDPVRMLRAMRFAAKLNMNISRETAAPITRLAVLLHDIPPARLFEESLKLLQA 264
Query: 279 GAAESSICLLRRYNLLKILLPF-------HA-AYLDQQAGKITA 314
G E++ LL +Y L + L P H +YL+Q K+ A
Sbjct: 265 GYGEATYRLLCKYQLFQPLFPVISHHVTSHGDSYLEQMIIKVLA 308
>gi|422017114|ref|ZP_16363682.1| poly(A) polymerase I [Providencia alcalifaciens Dmel2]
gi|414105819|gb|EKT67373.1| poly(A) polymerase I [Providencia alcalifaciens Dmel2]
Length = 444
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 129/249 (51%), Gaps = 14/249 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L G++AYLVGG VRDLLL + PKDFD+ T A +QIR+ F
Sbjct: 17 ISRDDISDNALKVLYRLNKNGYEAYLVGGGVRDLLLGQKPKDFDITTNATPEQIRKLFRN 76
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF------ETVAKH--GEGKETVLLSQIPYGCDEIDL 174
++GRRF + + +IEV++F E K+ + + +LL +G E D
Sbjct: 77 CRLVGRRFRLAHIMFGPEIIEVATFRGHHDQEVDDKNLSSQAQNGMLLRDNIFGSIEEDA 136
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
+R RDFT+NSL+++ + DY NG+ DL+ +R + + ED R++R
Sbjct: 137 IR------RDFTVNSLYYNIDDFSVRDYVNGLQDLKDGVIRLIGDPETRYREDPVRMIRA 190
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + +H L+ + + +R+ E +L G ++ +L +Y+L
Sbjct: 191 VRFACKLNMRIEPKTAEPIHRLAPLLGEIPSARLFEESLKLLQAGYGYATYKMLNQYHLF 250
Query: 295 KILLPFHAA 303
+ L P A+
Sbjct: 251 EQLFPVIAS 259
>gi|292898512|ref|YP_003537881.1| poly(A) polymerase [Erwinia amylovora ATCC 49946]
gi|291198360|emb|CBJ45466.1| poly(A) polymerase [Erwinia amylovora ATCC 49946]
Length = 457
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 128/274 (46%), Gaps = 23/274 (8%)
Query: 50 VSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVIT 109
V T+ I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T
Sbjct: 9 VRQMATIPREAHNISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTT 68
Query: 110 TANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------- 160
A Q+R+ F ++GRRF + V +IEV++F H E ++ V
Sbjct: 69 NATPDQMRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEAEQQVVEDRNSSHR 125
Query: 161 -----LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLR 215
LL +G E D R RD TINSL++ + DY G+SDL+ +R
Sbjct: 126 DQNGMLLRDNIFGSIEDDAQR------RDLTINSLYYSVADFTVRDYVGGLSDLQQGIIR 179
Query: 216 TLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYM 275
+ + ED R+LR +R AA+L +S + L++ + + +R+ E +
Sbjct: 180 MIGDPETRYREDPVRMLRVVRFAAKLDMSIAAGTGEPIPRLATLLHDIPPARLFEETLKL 239
Query: 276 LSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
L G S+ L Y L + L P Y +Q
Sbjct: 240 LQAGYGHSTYLKLLEYQLFQPLFPIITRYFTEQG 273
>gi|222154971|ref|YP_002555110.1| Poly(A) polymerase [Escherichia coli LF82]
gi|222031976|emb|CAP74714.1| Poly(A) polymerase [Escherichia coli LF82]
Length = 454
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|386627663|ref|YP_006147383.1| poly(A) polymerase I [Escherichia coli str. 'clone D i2']
gi|386632583|ref|YP_006152302.1| poly(A) polymerase I [Escherichia coli str. 'clone D i14']
gi|355418562|gb|AER82759.1| poly(A) polymerase I [Escherichia coli str. 'clone D i2']
gi|355423482|gb|AER87678.1| poly(A) polymerase I [Escherichia coli str. 'clone D i14']
Length = 472
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 45 AISRKNISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 104
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 105 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 162 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 216 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 275
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 276 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 330
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 331 YPLLETAQKIAQESGLTYHDAFAL 354
>gi|422806634|ref|ZP_16855065.1| poly(A) polymerase [Escherichia fergusonii B253]
gi|424815056|ref|ZP_18240207.1| poly(A) polymerase I [Escherichia fergusonii ECD227]
gi|324112445|gb|EGC06422.1| poly(A) polymerase [Escherichia fergusonii B253]
gi|325496076|gb|EGC93935.1| poly(A) polymerase I [Escherichia fergusonii ECD227]
Length = 454
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 127/259 (49%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLKEGIIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LLR
Sbjct: 198 MLRAVRFAAKLNMQISPETAEPIPRLAALLNDVPPARLFEESLKLLQAGYGYETYKLLRE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 258 YHLFQPLFPTITRYFTENG 276
>gi|420378493|ref|ZP_14877997.1| poly(A) polymerase [Shigella dysenteriae 225-75]
gi|391307434|gb|EIQ65167.1| poly(A) polymerase [Shigella dysenteriae 225-75]
Length = 454
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|58581989|ref|YP_201005.1| polynucleotide adenylyltransferase [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|84623904|ref|YP_451276.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188576403|ref|YP_001913332.1| poly(A) polymerase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58426583|gb|AAW75620.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|84367844|dbj|BAE69002.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188520855|gb|ACD58800.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 455
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 136/289 (47%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T+A ++++ F
Sbjct: 33 ISRKDISPNALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F + G G + L+ YG E D +R
Sbjct: 93 CRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEEDAIR-- 150
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + L + ED R+LR +R+A
Sbjct: 151 ----RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLA 206
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
++L + L+ + +R+ E+ + G +S L RY L L
Sbjct: 207 SKLNFEIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLFGALF 266
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + A M++ N D V+ D P LL
Sbjct: 267 PESAAALKSNRSGALRA----MVLEGLRNTDARVANDEPVSPAFLFALL 311
>gi|284009161|emb|CBA76198.1| poly(A) polymerase I [Arsenophonus nasoniae]
Length = 502
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 123/247 (49%), Gaps = 15/247 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L + G++AYLVGG VRDLLL + PKDFDV T A +QIR+ F
Sbjct: 71 ISRRDISDNALKVLYRLNNAGYEAYLVGGSVRDLLLGKKPKDFDVTTNATPEQIRKLFRN 130
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE---------GKETVLLSQIPYGCDEID 173
++GRRF + + +IEV++F + + + +LL +G E D
Sbjct: 131 CRLVGRRFRLAHIMFGYEIIEVATFRGSHEQTDTNNKDMAHKAQSGMLLRDNIFGNIEDD 190
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
+R RDFTINSL++ + DY G DL +R + + + ED R+LR
Sbjct: 191 AIR------RDFTINSLYYRINDFTLRDYVGGFEDLNNGMIRLIGDPKIRYREDPVRMLR 244
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R A +L + + + L+ ++ + +R+ E +L G + L+RYNL
Sbjct: 245 AIRFACKLNMQIDAETAKPIPQLAYLLKDIPSARLFEESLKLLQTGQGYQTYQQLKRYNL 304
Query: 294 LKILLPF 300
+ L P
Sbjct: 305 FQSLFPL 311
>gi|422013198|ref|ZP_16359826.1| poly(A) polymerase I [Providencia burhodogranariea DSM 19968]
gi|414103406|gb|EKT64981.1| poly(A) polymerase I [Providencia burhodogranariea DSM 19968]
Length = 450
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 124/247 (50%), Gaps = 15/247 (6%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R+ I + VL L GF+AYLVGG VRDLLL + PKDFD+ T A +QIR+ F
Sbjct: 18 NISRSDISDNALKVLYRLNKSGFEAYLVGGGVRDLLLGKKPKDFDITTNATPEQIRKLFR 77
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHGEGKETVLLSQIPYGCDEI 172
++GRRF + + VIEV++F E + + +LL +G E
Sbjct: 78 NCRLVGRRFRLAHIMFGPEVIEVATFRGHHDQNLPEDKNMSQQAQNGMLLRDNIFGSIED 137
Query: 173 DLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARIL 232
D +R RDFT+NSL+++ + DY G+ DL+ +R + + ED R+L
Sbjct: 138 DAIR------RDFTVNSLYYNIDDFSVRDYVGGLQDLKDGIIRMIGDPETRYREDPVRML 191
Query: 233 RGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYN 292
R +R A +L + + ++ L+ + + +R+ E +L G S+ +L Y+
Sbjct: 192 RAVRFACKLDMRIEPNTAQPIYQLAPLLREIPSARLFEESLKLLQAGQGYSTYKMLIEYH 251
Query: 293 LLKILLP 299
L L P
Sbjct: 252 LFDHLFP 258
>gi|429091597|ref|ZP_19154264.1| Poly(A) polymerase [Cronobacter dublinensis 1210]
gi|429096471|ref|ZP_19158577.1| Poly(A) polymerase [Cronobacter dublinensis 582]
gi|426282811|emb|CCJ84690.1| Poly(A) polymerase [Cronobacter dublinensis 582]
gi|426743793|emb|CCJ80377.1| Poly(A) polymerase [Cronobacter dublinensis 1210]
Length = 447
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 142/282 (50%), Gaps = 21/282 (7%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFD+ T A Q+R+ F
Sbjct: 21 ISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF-----ETV---AKHGEGKETVLLSQIPYGCDEIDL 174
++GRRF + V +IEV++F E+V A G+ +LL +G E D
Sbjct: 81 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEESVSDRATSQRGQNGMLLRDNIFGSIEEDA 140
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
R RDFTINSL++ + DY G++DL +R + + ED R+LR
Sbjct: 141 QR------RDFTINSLYYSVADFTVRDYVGGLNDLNDGIIRLIGDPETRYREDPVRMLRA 194
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R AA+L + + + L++ + + +R+ E +L G ++ LL YNL
Sbjct: 195 VRFAAKLDMRISPETGEPIPRLATLLNDVPPARLFEESLKLLQAGYGYATYRLLCEYNLF 254
Query: 295 KILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD 334
+ L P + Y ++ ++PM ++ ++ N D + D
Sbjct: 255 QPLFPGISRYFTEK-----GDSPMERIITQVLKNTDNRIHND 291
>gi|451823269|ref|YP_007459543.1| poly(A) polymerase [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
gi|451776069|gb|AGF47110.1| poly(A) polymerase [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
Length = 430
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 150/303 (49%), Gaps = 27/303 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+ + L +GF AY+VGG +RDL+ PKDFD+ T A +Q++ F R+ IIG+RF I
Sbjct: 40 ICRTLNKEGFSAYIVGGAIRDLMTGIKPKDFDIATNAKPEQVKALFRRAYIIGKRFKIVH 99
Query: 135 VHIKGSVIEVSSFETVA----KHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSL 190
V +IE+S+F + + +HG +L +G E D+ R RDFTINSL
Sbjct: 100 VKFGQELIEISTFRSSSLEKDEHGR-----ILKDNSFGTQEEDVAR------RDFTINSL 148
Query: 191 FFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDID 250
+++P +I D+ NGI DLR ++ + + ED R+LR +R A+++ + +
Sbjct: 149 YYNPINEEIIDFYNGIKDLRNRNVKIIGNPEERYREDPVRMLRAVRFASKINGTIEEQSS 208
Query: 251 TAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAG 310
++ L I+ + ++R+ E +L+ G A + L LL LLP L+ Q+
Sbjct: 209 NGINKLKDLIKNVPQARLFDETIKILTCGNALDCLKKLNSKKLLDNLLPSLPKTLEDQSS 268
Query: 311 KITAENPMMLMRLFFNLDKLVSCDR---PA---DYTLWVGLLSFHQALVSDPQDAFVVWV 364
L N D +S D+ P+ LW + ++ L+ + + F+ +
Sbjct: 269 ------ISFLGLALSNTDSRISKDKNISPSFLLAVILWNPIKILYKKLLEEENNPFIAMM 322
Query: 365 FAS 367
AS
Sbjct: 323 KAS 325
>gi|162135892|ref|NP_414685.4| poly(A) polymerase I [Escherichia coli str. K-12 substr. MG1655]
gi|170079780|ref|YP_001729100.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. DH10B]
gi|238899542|ref|YP_002925338.1| poly(A) polymerase I [Escherichia coli BW2952]
gi|254791278|ref|YP_003076115.1| poly(A) polymerase I [Escherichia coli O157:H7 str. TW14359]
gi|378714517|ref|YP_005279410.1| poly(A) polymerase [Escherichia coli KO11FL]
gi|388476262|ref|YP_488446.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. W3110]
gi|115311610|sp|P0ABF3.2|PCNB_ECO57 RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein; Flags: Precursor
gi|115311611|sp|P0ABF2.2|PCNB_ECOL6 RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein; Flags: Precursor
gi|115311612|sp|P0ABF1.2|PCNB_ECOLI RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein; Flags: Precursor
gi|85674351|dbj|BAB96720.2| poly(A) polymerase I [Escherichia coli str. K12 substr. W3110]
gi|87081691|gb|AAC73254.2| poly(A) polymerase [Escherichia coli str. K-12 substr. MG1655]
gi|169887615|gb|ACB01322.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. DH10B]
gi|238862072|gb|ACR64070.1| poly(A) polymerase I [Escherichia coli BW2952]
gi|254590678|gb|ACT70039.1| poly(A) polymerase I [Escherichia coli O157:H7 str. TW14359]
gi|323380078|gb|ADX52346.1| poly(A) polymerase [Escherichia coli KO11FL]
gi|359331006|dbj|BAL37453.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. MDS42]
Length = 465
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 38 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 97
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 98 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 154
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 155 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 208
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 209 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 268
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 269 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 323
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 324 YPLLETAQKIAQESGLTYHDAFAL 347
>gi|387605620|ref|YP_006094476.1| poly(A) polymerase [Escherichia coli 042]
gi|284919920|emb|CBG32975.1| poly(A) polymerase [Escherichia coli 042]
Length = 465
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 38 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 97
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 98 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 154
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 155 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 208
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 209 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 268
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 269 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 323
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 324 YPLLETAQKIAQESGLTYHDAFAL 347
>gi|170021503|ref|YP_001726457.1| poly(A) polymerase I [Escherichia coli ATCC 8739]
gi|251783703|ref|YP_002998007.1| poly(A) polymerase I [Escherichia coli BL21(DE3)]
gi|169756431|gb|ACA79130.1| poly(A) polymerase [Escherichia coli ATCC 8739]
gi|242375976|emb|CAQ30658.1| poly(A) polymerase I [Escherichia coli BL21(DE3)]
Length = 465
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 38 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 97
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 98 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNISDRTTSQRGQNGMLLRDNIFGSI 154
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 155 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 208
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 209 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 268
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 269 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 323
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 324 YPLLETAQKIAQESGLTYHDAFAL 347
>gi|193067681|ref|ZP_03048648.1| poly(A) polymerase [Escherichia coli E110019]
gi|192959093|gb|EDV89529.1| poly(A) polymerase [Escherichia coli E110019]
Length = 454
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 127/259 (49%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFRG---HHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 258 YHLFQPLFPTITRYFTENG 276
>gi|218703399|ref|YP_002410918.1| poly(A) polymerase I [Escherichia coli UMN026]
gi|218430496|emb|CAR11362.1| poly(A) polymerase I [Escherichia coli UMN026]
Length = 472
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 45 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 104
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 105 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 162 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 216 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYNLLCE 275
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 276 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 330
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 331 YPLLETAQKIAQESGLTYHDAFAL 354
>gi|384419115|ref|YP_005628475.1| poly(A) polymerase [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353462028|gb|AEQ96307.1| poly(A) polymerase [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 455
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 136/289 (47%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T+A ++++ F
Sbjct: 33 ISRKDISPNALRVLYRLRESGFGAYLVGGAVRDLLVGHHPKDFDVATSATPEEVKALFRN 92
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F + G G + L+ YG E D +R
Sbjct: 93 CRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELDNGRLVRDNVYGTIEDDAIR-- 150
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G D++ ++ + L + ED R+LR +R+A
Sbjct: 151 ----RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLIGDPELRYQEDPVRMLRAVRLA 206
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
++L + L+ + +R+ E+ + G +S L RY L L
Sbjct: 207 SKLNFEIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFLSGHGVASFEGLERYGLFGALF 266
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + A M++ N D V+ D P LL
Sbjct: 267 PESAAALKSNRSGALRA----MVLEGLRNTDARVANDEPVSPAFLFALL 311
>gi|387615492|ref|YP_006118514.1| poly(A) polymerase I [Escherichia coli O83:H1 str. NRG 857C]
gi|312944753|gb|ADR25580.1| poly(A) polymerase I [Escherichia coli O83:H1 str. NRG 857C]
Length = 472
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 159/354 (44%), Gaps = 40/354 (11%)
Query: 35 MCREMCS---DSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGG 91
CR++ S Q V + I+R I + + V+ L G++A+LVGG
Sbjct: 15 FCRKVLSREESEAEQAVACPQVTVIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGG 74
Query: 92 CVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVA 151
VRDLLL + PKDFDV T A +Q+R+ F ++GRRF + V +IEV++F
Sbjct: 75 GVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR--- 131
Query: 152 KHGE-----------GKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIY 200
H E G+ +LL +G E D R RDFTINSL++ +
Sbjct: 132 GHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVR 185
Query: 201 DYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSI 260
DY G+ DL+ +R + + ED R+LR +R AA+LG+ + + L++ +
Sbjct: 186 DYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLL 245
Query: 261 ERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPM-- 318
+ +R+ E +L G + LL Y+L + L P Y + ++PM
Sbjct: 246 NDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTE-----NGDSPMER 300
Query: 319 MLMRLFFNLDKLVSCD---RPA---DYTLWVGLLSFHQALVSDP----QDAFVV 362
++ ++ N D + D PA W LL Q + + DAF +
Sbjct: 301 IIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFAL 354
>gi|161486546|ref|NP_835874.2| poly(A) polymerase I [Shigella flexneri 2a str. 2457T]
gi|384541715|ref|YP_005725776.1| poly(A) polymerase I [Shigella flexneri 2002017]
gi|281599499|gb|ADA72483.1| poly(A) polymerase I [Shigella flexneri 2002017]
Length = 472
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 45 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 104
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 105 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 162 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 216 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 275
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 276 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 330
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 331 YPLLETAQKIAQESGLTYHDAFAL 354
>gi|451811685|ref|YP_007448140.1| poly(A) polymerase [Candidatus Kinetoplastibacterium crithidii
TCC036E]
gi|451776843|gb|AGF47842.1| poly(A) polymerase [Candidatus Kinetoplastibacterium crithidii
TCC036E]
Length = 410
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 131/227 (57%), Gaps = 11/227 (4%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V + L+ GF +Y+VGG +RDL++ PKDFD+ T A+ +++R F R+ IIG+RF I
Sbjct: 40 VCETLQKAGFVSYIVGGAIRDLIVGLKPKDFDIATNASPEEVRSLFRRAYIIGKRFRIVH 99
Query: 135 VHIKGSVIEVSSFET--VAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
V + +IE+S+F + + K G+ +L +G + D R RDFTINSL++
Sbjct: 100 VIMGKELIEISTFRSPPLEKDEFGR---ILKDNSFGSHQEDASR------RDFTINSLYY 150
Query: 193 DPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTA 252
+P +I DY +G+ DL+ ++R + A + ED R+LR +R++ ++ + K+ +
Sbjct: 151 NPMKQEIIDYYSGLKDLKYKRIRIIGNAGERYREDPVRMLRAIRLSTKINGTLEKNTNIE 210
Query: 253 MHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+ +L I + ++R+ E+ +L+ G + S + L N+L L+P
Sbjct: 211 IDALKDLIVNIPQARLFDEIIKILTCGNSFSCLEQLHAKNILHNLIP 257
>gi|424794802|ref|ZP_18220732.1| polynucleotide adenyltransferase [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422795788|gb|EKU24417.1| polynucleotide adenyltransferase [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 445
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 135/289 (46%), Gaps = 15/289 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + VL L+ GF AYLVGG VRDLL+ PKDFDV T A +Q+++ F
Sbjct: 15 VSRKDISPNALRVLYRLREAGFGAYLVGGAVRDLLVELQPKDFDVATDATPEQVKQLFRN 74
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWR 178
+IGRRF + V +IEV++F G G + L+ YG E D VR
Sbjct: 75 CRLIGRRFRLAHVVYGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGSIEDDAVR-- 132
Query: 179 NSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIA 238
RDFT N+L++ + DY G +D++ +R + + ED R+LR +R+A
Sbjct: 133 ----RDFTCNALYYAIEDFSVRDYTGGFADVQARLMRMIGDPEQRYREDPVRMLRAVRLA 188
Query: 239 ARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILL 298
A+L + L+ + +R+ E+ + G +S L RY LL L
Sbjct: 189 AKLDFEIEPSTAEPIPRLAGLLAEAAPARLFEEVLKLFLSGDGVASFEGLERYGLLAALF 248
Query: 299 PFHAAYL-DQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
P AA L ++G + ML+ N D V+ D P LL
Sbjct: 249 PESAAALHSNRSGALR----RMLIEGLRNTDARVANDEPVSPAFLFALL 293
>gi|121997474|ref|YP_001002261.1| poly(A) polymerase [Halorhodospira halophila SL1]
gi|121588879|gb|ABM61459.1| poly(A) polymerase [Halorhodospira halophila SL1]
Length = 411
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 127/254 (50%), Gaps = 8/254 (3%)
Query: 88 LVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSF 147
+VGG VRDL L R PKDFDV T A +++R+ F +IGRRF + VH +IEV++F
Sbjct: 1 MVGGGVRDLSLGREPKDFDVATDARPEEVRKLFRNCRLIGRRFRLAHVHFGAEIIEVATF 60
Query: 148 ETV--AKHGEGKETVLLSQIPYGC---DEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDY 202
+ + EG + I G D + +++ RDFT+N+L+++ + D+
Sbjct: 61 RALHPPEDSEGDDADGERVIENGRIVRDNVYGTLAEDALRRDFTVNALYYNIDDFSVVDH 120
Query: 203 ANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIER 262
A G+ DL +R + + + ED R+LR +R A +LG MH ++ S+
Sbjct: 121 AGGMDDLEDGIIRLIGDPHERYQEDPVRMLRAVRFALKLGFRIHPQTAAPMHDMADSVAD 180
Query: 263 LDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMR 322
+ +R+ E + G A + +LR Y L + LLP A L+++ + +R
Sbjct: 181 MPPARLFDEALKLFMSGDALDAFEMLRHYGLFESLLPLTAEALEEEGSEQWVPFIAAALR 240
Query: 323 LFFNLDKLVSCDRP 336
N D+ + D+P
Sbjct: 241 ---NTDERIGADKP 251
>gi|91209212|ref|YP_539198.1| poly(A) polymerase [Escherichia coli UTI89]
gi|91070786|gb|ABE05667.1| poly(A) polymerase [Escherichia coli UTI89]
Length = 472
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 45 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 104
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 105 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 162 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 216 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 275
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 276 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 330
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 331 YPLLETAQKIAQESGLTYHDAFAL 354
>gi|403059590|ref|YP_006647807.1| poly(A) polymerase I [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402806916|gb|AFR04554.1| poly(A) polymerase I [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 452
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 148/315 (46%), Gaps = 26/315 (8%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+ I + VL L G++AYLVGG VRDLLL + PKDFD+ T A Q+R+ F
Sbjct: 21 ISRSDISDNALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA-----------KHGEGKETVLLSQIPYGCDE 171
++GRRF + + VIEV++F + + +LL +G E
Sbjct: 81 CRLVGRRFRLAHIMFGPEVIEVATFRGHHEQHQEQQEIKNSSQQAQSGMLLRDNIFGSVE 140
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF+INSL++ + DY +G++DLR +R + + ED R+
Sbjct: 141 EDAQR------RDFSINSLYYSISDFSVRDYTDGLNDLRQGVIRMIGDPETRYREDPVRM 194
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L ++ + + L+S + + +R+ E +L G + +L Y
Sbjct: 195 LRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGYGYPTYKMLCEY 254
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD---RPA---DYTLWVGL 345
L + L P + Y G T E M+ ++ N D+ + D PA LW L
Sbjct: 255 QLFQPLFPLLSRYFTPN-GDSTLER--MVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPL 311
Query: 346 LSFHQALVSDPQDAF 360
+ Q L + A+
Sbjct: 312 VEHAQKLAQESGLAY 326
>gi|416284575|ref|ZP_11647325.1| Poly(A) polymerase [Shigella boydii ATCC 9905]
gi|425420742|ref|ZP_18801986.1| poly(A) polymerase I [Escherichia coli 0.1288]
gi|320179882|gb|EFW54826.1| Poly(A) polymerase [Shigella boydii ATCC 9905]
gi|408348542|gb|EKJ62638.1| poly(A) polymerase I [Escherichia coli 0.1288]
Length = 435
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 8 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 67
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 68 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 124
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 125 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 178
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 179 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 238
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 239 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 293
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 294 YPLLETAQKIAQESGLTYHDAFAL 317
>gi|26246087|ref|NP_752126.1| poly(A) polymerase I [Escherichia coli CFT073]
gi|82542743|ref|YP_406690.1| poly(A) polymerase I [Shigella boydii Sb227]
gi|110640364|ref|YP_668092.1| poly(A) polymerase [Escherichia coli 536]
gi|161986592|ref|YP_309183.2| poly(A) polymerase [Shigella sonnei Ss046]
gi|162139816|ref|NP_308174.2| poly(A) polymerase [Escherichia coli O157:H7 str. Sakai]
gi|209917334|ref|YP_002291418.1| poly(A) polymerase I [Escherichia coli SE11]
gi|218557086|ref|YP_002389999.1| poly(A) polymerase I [Escherichia coli S88]
gi|218688020|ref|YP_002396232.1| poly(A) polymerase I [Escherichia coli ED1a]
gi|218698564|ref|YP_002406193.1| poly(A) polymerase I [Escherichia coli IAI39]
gi|237704302|ref|ZP_04534783.1| poly(A) polymerase I [Escherichia sp. 3_2_53FAA]
gi|291280967|ref|YP_003497785.1| poly(A) polymerase [Escherichia coli O55:H7 str. CB9615]
gi|306815256|ref|ZP_07449405.1| poly(A) polymerase I [Escherichia coli NC101]
gi|383176748|ref|YP_005454753.1| poly(A) polymerase I [Shigella sonnei 53G]
gi|386637504|ref|YP_006104302.1| poly(A) polymerase [Escherichia coli ABU 83972]
gi|387505072|ref|YP_006157328.1| poly(A) polymerase I [Escherichia coli O55:H7 str. RM12579]
gi|387610616|ref|YP_006113732.1| poly(A) polymerase [Escherichia coli ETEC H10407]
gi|387880703|ref|YP_006311005.1| poly(A) polymerase I [Escherichia coli Xuzhou21]
gi|417944210|ref|ZP_12587454.1| poly(A) polymerase I [Escherichia coli XH140A]
gi|417975948|ref|ZP_12616744.1| poly(A) polymerase I [Escherichia coli XH001]
gi|419699072|ref|ZP_14226695.1| poly(A) polymerase I [Escherichia coli SCI-07]
gi|419811488|ref|ZP_14336362.1| poly(A) polymerase I [Escherichia coli O32:H37 str. P4]
gi|419865460|ref|ZP_14387843.1| poly(A) polymerase I [Escherichia coli O103:H25 str. CVM9340]
gi|419871628|ref|ZP_14393681.1| poly(A) polymerase I [Escherichia coli O103:H2 str. CVM9450]
gi|433325029|ref|ZP_20402246.1| poly(A) polymerase I [Escherichia coli J96]
gi|450185080|ref|ZP_21888927.1| poly(A) polymerase I [Escherichia coli SEPT362]
gi|450238161|ref|ZP_21898838.1| poly(A) polymerase I [Escherichia coli S17]
gi|26106484|gb|AAN78670.1|AE016755_170 Poly(A) polymerase [Escherichia coli CFT073]
gi|81244154|gb|ABB64862.1| poly(A) polymerase I [Shigella boydii Sb227]
gi|110341956|gb|ABG68193.1| poly(A) polymerase [Escherichia coli 536]
gi|209910593|dbj|BAG75667.1| poly(A) polymerase [Escherichia coli SE11]
gi|218363855|emb|CAR01518.1| poly(A) polymerase I [Escherichia coli S88]
gi|218368550|emb|CAR16287.1| poly(A) polymerase I [Escherichia coli IAI39]
gi|218425584|emb|CAR06370.1| poly(A) polymerase I [Escherichia coli ED1a]
gi|226902214|gb|EEH88473.1| poly(A) polymerase I [Escherichia sp. 3_2_53FAA]
gi|290760840|gb|ADD54801.1| Poly(A) polymerase [Escherichia coli O55:H7 str. CB9615]
gi|305850918|gb|EFM51373.1| poly(A) polymerase I [Escherichia coli NC101]
gi|307551996|gb|ADN44771.1| poly(A) polymerase [Escherichia coli ABU 83972]
gi|309700352|emb|CBI99640.1| poly(A) polymerase [Escherichia coli ETEC H10407]
gi|342364038|gb|EGU28141.1| poly(A) polymerase I [Escherichia coli XH140A]
gi|344194346|gb|EGV48420.1| poly(A) polymerase I [Escherichia coli XH001]
gi|374357066|gb|AEZ38773.1| poly(A) polymerase I [Escherichia coli O55:H7 str. RM12579]
gi|380349714|gb|EIA37979.1| poly(A) polymerase I [Escherichia coli SCI-07]
gi|385155532|gb|EIF17534.1| poly(A) polymerase I [Escherichia coli O32:H37 str. P4]
gi|386794161|gb|AFJ27195.1| poly(A) polymerase I [Escherichia coli Xuzhou21]
gi|388336746|gb|EIL03275.1| poly(A) polymerase I [Escherichia coli O103:H2 str. CVM9450]
gi|388337613|gb|EIL04112.1| poly(A) polymerase I [Escherichia coli O103:H25 str. CVM9340]
gi|432346578|gb|ELL41059.1| poly(A) polymerase I [Escherichia coli J96]
gi|449325350|gb|EMD15257.1| poly(A) polymerase I [Escherichia coli SEPT362]
gi|449325836|gb|EMD15734.1| poly(A) polymerase I [Escherichia coli S17]
Length = 472
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 45 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 104
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 105 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 162 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 216 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 275
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 276 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 330
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 331 YPLLETAQKIAQESGLTYHDAFAL 354
>gi|365846667|ref|ZP_09387169.1| polynucleotide adenylyltransferase [Yokenella regensburgei ATCC
43003]
gi|364573799|gb|EHM51286.1| polynucleotide adenylyltransferase [Yokenella regensburgei ATCC
43003]
Length = 453
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 148/315 (46%), Gaps = 27/315 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T+A Q+R+ F
Sbjct: 27 AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTSATPDQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF--------ETVAKHGEGKETVLLSQIPYGCDEID 173
++GRRF + V +IEV++F + A G+ +LL +G E D
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFRGHHDGSPDDRATSQRGQNGMLLRDNIFGSIEED 146
Query: 174 LVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILR 233
R RDFTINSL++ + DY G+ DL+ +R + + ED R+LR
Sbjct: 147 AQR------RDFTINSLYYSVADFTVRDYVGGMQDLQDGIIRLIGNPETRYREDPVRMLR 200
Query: 234 GLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNL 293
+R AA+L + + + L++ + + +R+ E +L G + LR NL
Sbjct: 201 AVRFAAKLNMRISPETAEPIPRLATLMNDVPPARLFEESLKLLQAGYGFETYRGLRECNL 260
Query: 294 LKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWVGL 345
+ L P + Y + ++PM ++ ++ N D + D PA W L
Sbjct: 261 FQPLFPTISRYFTE-----NGDSPMERIIAQVLKNTDNRIHNDMRVNPAFLFAAMFWYPL 315
Query: 346 LSFHQALVSDPQDAF 360
L Q + + A+
Sbjct: 316 LEMAQKIAQESGLAY 330
>gi|349573549|ref|ZP_08885527.1| poly(A) polymerase [Neisseria shayeganii 871]
gi|348014855|gb|EGY53721.1| poly(A) polymerase [Neisseria shayeganii 871]
Length = 502
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 128/262 (48%), Gaps = 9/262 (3%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V+ L GF+AY+VGG VRDLLL PKDFDV T A +++R+ F RS IIGRRF I
Sbjct: 90 VVSRLHQAGFEAYVVGGAVRDLLLGIEPKDFDVATNARPEEVRKIFRRSRIIGRRFQIVH 149
Query: 135 VHIKGSVIEVSSFETVAKHGEGKE-TVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFD 193
V + IEV++F + E ++ YG D R RDFT N+L+++
Sbjct: 150 VMVGPETIEVTTFRGGGRPARQNEHGRIMQDNSYGTLAQDAER------RDFTCNALYYN 203
Query: 194 PFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAM 253
P +I D+ +G+ D+R +L + A + ED R+LR R++ +LG +D +
Sbjct: 204 PQRQEITDFHHGVDDIRAKRLVMIGDARERYQEDPVRMLRAARLSGKLGFQVAEDTAEPI 263
Query: 254 HSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAGKIT 313
+ + + +R+ E+ +L G+AE CL + L P H G
Sbjct: 264 AAQLHLLPKEPLARLFDEVMKILFSGSAED--CLRQLKQLQMDARPLHPLLDAALHGLPP 321
Query: 314 AENPMMLMRLFFNLDKLVSCDR 335
A M+ N D+ + D+
Sbjct: 322 AGEHNMVSLALANTDRRLKADQ 343
>gi|333994937|ref|YP_004527550.1| poly(A) polymerase [Treponema azotonutricium ZAS-9]
gi|333735229|gb|AEF81178.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Treponema
azotonutricium ZAS-9]
Length = 407
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 142/285 (49%), Gaps = 26/285 (9%)
Query: 26 RFNHTLEPQMCREMCSDSFNQEVDVSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQ 85
RF ++ E ++ + Q N+ VDS + V++ L++ GF+
Sbjct: 2 RFRYSAEENGKPVKIAEVYTQNEHGINFSDVDSEAV------------YVIERLRANGFE 49
Query: 86 AYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVS 145
Y+VGG VRDL+L + PKDFD++++A+ +I+R F + IIG RF + V+ + EVS
Sbjct: 50 TYIVGGAVRDLILGKKPKDFDIVSSASPAKIKRIFRNARIIGHRFRLVHVYFGPKIFEVS 109
Query: 146 SFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANG 205
+F ++ K G T +G E D+ R RDFT+N+LF+DP + DY G
Sbjct: 110 TFRSL-KDGPTSNT-------FGTIEEDVQR------RDFTLNALFYDPLKQIVVDYVGG 155
Query: 206 ISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDK 265
+ D++ K++ +IP FT+D R++R ++ A G + + SS +E +
Sbjct: 156 MKDIKAKKIKPIIPLTHIFTDDPVRMIRAVKYGASTGFKLPLSLKWKIRKQSSLLEAISA 215
Query: 266 SRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYLDQQAG 310
SR+ E+ +L A + + L L + L P A +AG
Sbjct: 216 SRLTEEIFKILHSSQAAAIVASLDSMGLYQYLQPRAAELFKAKAG 260
>gi|238754483|ref|ZP_04615838.1| Poly(A) polymerase [Yersinia ruckeri ATCC 29473]
gi|238707312|gb|EEP99674.1| Poly(A) polymerase [Yersinia ruckeri ATCC 29473]
Length = 467
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 155/323 (47%), Gaps = 34/323 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L GF+AYLVGG VRDLLL + PKDFD+ T+A +Q+R+ F
Sbjct: 38 ISRKEISDNALKVLYRLNKSGFEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRN 97
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF---------ETVAKHG--EGKETVLLSQIPYGCDE 171
++GRRF + V +IEV++F E+ K+ + + +LL +G E
Sbjct: 98 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQPESNDKNSSQQAQNGMLLRDNIFGSIE 157
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + + ED R+
Sbjct: 158 EDAQR------RDFTINSLYYGISDFALRDYTGGLRDLKQGIIRLIGDPEVRYREDPVRM 211
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L ++ + + L+S + + +R+ E +L G + L Y
Sbjct: 212 LRAVRFAAKLDMTISPETAEPIPRLASLLREIPPARLFEESLKLLQSGYGYKTYLKLCEY 271
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLWV 343
L + L P A + ++PM +L+++ N D + D+ PA LW
Sbjct: 272 QLFQPLFPLIARNFTEH-----NDSPMERILIQVLKNTDYRLQNDQRVNPAFLFAAMLWY 326
Query: 344 GLLSFHQALVSDP----QDAFVV 362
L+ Q L + DAF +
Sbjct: 327 PLIEHAQKLTQESGLAYYDAFAL 349
>gi|415859811|ref|ZP_11533924.1| poly(A) polymerase family protein [Shigella flexneri 2a str. 2457T]
gi|313646476|gb|EFS10937.1| poly(A) polymerase family protein [Shigella flexneri 2a str. 2457T]
Length = 437
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 10 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 181 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 240
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 241 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 295
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 296 YPLLETAQKIAQESGLTYHDAFAL 319
>gi|253774829|ref|YP_003037660.1| poly(A) polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253325873|gb|ACT30475.1| poly(A) polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
Length = 472
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 45 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 104
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 105 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNISDRTTSQRGQNGMLLRDNIFGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 162 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 216 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 275
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 276 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 330
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 331 YPLLETAQKIAQESGLTYHDAFAL 354
>gi|292489258|ref|YP_003532145.1| methionine gamma-lyase [Erwinia amylovora CFBP1430]
gi|428786221|ref|ZP_19003701.1| methionine gamma-lyase [Erwinia amylovora ACW56400]
gi|291554692|emb|CBA22417.1| methionine gamma-lyase [Erwinia amylovora CFBP1430]
gi|312173418|emb|CBX81672.1| methionine gamma-lyase [Erwinia amylovora ATCC BAA-2158]
gi|426275067|gb|EKV52805.1| methionine gamma-lyase [Erwinia amylovora ACW56400]
Length = 481
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 128/274 (46%), Gaps = 23/274 (8%)
Query: 50 VSNWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVIT 109
V T+ I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T
Sbjct: 33 VRQMATIPREAHNISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTT 92
Query: 110 TANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETV--------- 160
A Q+R+ F ++GRRF + V +IEV++F H E ++ V
Sbjct: 93 NATPDQMRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEAEQQVVEDRNSSHR 149
Query: 161 -----LLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLR 215
LL +G E D R RD TINSL++ + DY G+SDL+ +R
Sbjct: 150 DQNGMLLRDNIFGSIEDDAQR------RDLTINSLYYSVADFTVRDYVGGLSDLQQGIIR 203
Query: 216 TLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYM 275
+ + ED R+LR +R AA+L +S + L++ + + +R+ E +
Sbjct: 204 MIGDPETRYREDPVRMLRVVRFAAKLDMSIAAGTGEPIPRLATLLHDIPPARLFEETLKL 263
Query: 276 LSYGAAESSICLLRRYNLLKILLPFHAAYLDQQA 309
L G S+ L Y L + L P Y +Q
Sbjct: 264 LQAGYGHSTYLKLLEYQLFQPLFPIITRYFTEQG 297
>gi|227327661|ref|ZP_03831685.1| poly(A) polymerase I [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 452
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 148/315 (46%), Gaps = 26/315 (8%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R+ I + VL L G++AYLVGG VRDLLL + PKDFD+ T A Q+R+ F
Sbjct: 21 ISRSDISDNALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDITTNATPDQVRKLFRN 80
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVA-----------KHGEGKETVLLSQIPYGCDE 171
++GRRF + + VIEV++F + + +LL +G E
Sbjct: 81 CRLVGRRFRLAHIMFGPEVIEVATFRGHHEQHQEQQEVKNSSQQAQSGMLLRDNIFGSVE 140
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDF+INSL++ + DY +G++DLR +R + + ED R+
Sbjct: 141 EDAQR------RDFSINSLYYSISDFSVRDYTDGLNDLRQGIIRMIGDPETRYREDPVRM 194
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L ++ + + L+S + + +R+ E +L G + +L Y
Sbjct: 195 LRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPAARMFEESLKLLQSGYGYPTYKMLCEY 254
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCD---RPA---DYTLWVGL 345
L + L P + Y G T E M+ ++ N D+ + D PA LW L
Sbjct: 255 QLFQPLFPLLSRYFTPN-GDSTLER--MVAQVLKNTDQRLQNDMRVNPAFLFSAMLWYPL 311
Query: 346 LSFHQALVSDPQDAF 360
+ Q L + A+
Sbjct: 312 VEHAQKLAQESGLAY 326
>gi|452970011|ref|ZP_21968238.1| poly(A) polymerase I [Escherichia coli O157:H7 str. EC4009]
Length = 437
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 10 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 69
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 70 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 126
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 127 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 180
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 181 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 240
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 241 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 295
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 296 YPLLETAQKIAQESGLTYHDAFAL 319
>gi|161950166|ref|YP_401882.2| poly(A) polymerase [Shigella dysenteriae Sd197]
Length = 472
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 45 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 104
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 105 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 162 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 216 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 275
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 276 YHLFQPLFPTITRYFTE-----NGDSPMERIIKQVLKNTDTRIHNDMRVNPAFLFAAMFW 330
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 331 YPLLETAQKIAQESGLTYHDAFAL 354
>gi|384259533|ref|YP_005403467.1| poly(A) polymerase I [Rahnella aquatilis HX2]
gi|380755509|gb|AFE59900.1| poly(A) polymerase I [Rahnella aquatilis HX2]
Length = 531
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 148/313 (47%), Gaps = 33/313 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + VL L GF+A+LVGG VRDLLL + PKDFD+ T A Q+R+ F
Sbjct: 101 ISRRDISENALKVLYRLNKSGFEAFLVGGGVRDLLLDKKPKDFDITTNATPDQVRKLFRN 160
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET------------VLLSQIPYGCD 170
++GRRF + V +IEV++F H + +ET +LL +G
Sbjct: 161 CRLVGRRFRLAHVMFGPEIIEVATFR--GHHEQHEETEDKNVSQQAVNGMLLRDNIFGTI 218
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL +R + + ED R
Sbjct: 219 EDDAQR------RDFTINSLYYGVADFTVRDYTGGLRDLENGIIRLIGDPETRYREDPVR 272
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ ++ + +R+ E +L G + L
Sbjct: 273 MLRAVRFAAKLDMKISPETAEPIPRLATLLQEIPPARLFEESLKLLQAGYGYETYKKLCE 332
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLW 342
Y L + L P A +Q ++PM +L+++ N D + D+ PA LW
Sbjct: 333 YQLFQPLFPLIARQFTEQ-----GDSPMEHILIQVLKNTDHRLHNDQRVNPAFLFAAMLW 387
Query: 343 VGLLSFHQALVSD 355
++ Q L +
Sbjct: 388 YPVIEHAQKLAQE 400
>gi|293418032|ref|ZP_06660654.1| poly(A) polymerase [Escherichia coli B185]
gi|291430750|gb|EFF03748.1| poly(A) polymerase [Escherichia coli B185]
Length = 472
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 45 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 104
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 105 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 162 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 216 MLRAVRFAAKLGMHISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 275
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 276 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 330
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 331 YPLLETAQKIAQESGLTYHDAFAL 354
>gi|291086145|ref|ZP_06354946.2| polyA polymerase [Citrobacter youngae ATCC 29220]
gi|291069510|gb|EFE07619.1| polyA polymerase [Citrobacter youngae ATCC 29220]
Length = 454
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 149/323 (46%), Gaps = 37/323 (11%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 28 ISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRN 87
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F H EG E +LL +G E
Sbjct: 88 CRLVGRRFRLAHVMFGPEIIEVATFRG---HHEGSEADRTTSQRGQNGMLLRDNIFGSIE 144
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL +R + + ED R+
Sbjct: 145 EDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLEEGIIRLIGNPETRYREDPVRM 198
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L + + + L++ + + +R+ E +L G + LR Y
Sbjct: 199 LRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARLFEEALKLLQAGYGYETYKKLREY 258
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWV 343
+L + L P Y + ++PM ++ ++ N D ++ D PA W
Sbjct: 259 SLFQPLFPTITRYFTED-----GDSPMERIIAQVLKNTDNRINNDMRVNPAFLFAAMFWY 313
Query: 344 GLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 314 PLLEAAQKIAQESGLAYYDAFAL 336
>gi|218547599|ref|YP_002381390.1| poly(A) polymerase I [Escherichia fergusonii ATCC 35469]
gi|218355140|emb|CAQ87747.1| poly(A) polymerase I [Escherichia fergusonii ATCC 35469]
Length = 472
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 127/259 (49%), Gaps = 20/259 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 45 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 104
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 105 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 162 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLKEGIIRLIGNPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+L + + + L++ + + +R+ E +L G + LLR
Sbjct: 216 MLRAVRFAAKLNMQISPETAEPIPRLAALLNDVPPARLFEESLKLLQAGYGYETYKLLRE 275
Query: 291 YNLLKILLPFHAAYLDQQA 309
Y+L + L P Y +
Sbjct: 276 YHLFQPLFPTITRYFTENG 294
>gi|333895317|ref|YP_004469192.1| poly(A) polymerase I [Alteromonas sp. SN2]
gi|332995335|gb|AEF05390.1| poly(A) polymerase I [Alteromonas sp. SN2]
Length = 438
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 128/261 (49%), Gaps = 20/261 (7%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI+R + + V+ L GF++YLVGGCVRD+L+ PKDFDV T A +QI+ F
Sbjct: 7 GISREDVSPNALKVMYRLNGAGFESYLVGGCVRDILMGHEPKDFDVATNATPEQIKGLFR 66
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSF------ETVAKHGEGKETV--------LLSQIPY 167
+IGRRF + + VIEV++F E AK + V L+ +
Sbjct: 67 NCRLIGRRFRLAHIVFGREVIEVATFRGHHSEEPEAKEVPKNKAVSKRDAHGQLVRDNVF 126
Query: 168 GCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227
G E D R RDFT N++++ + D+ANG+ + ++R + + + ED
Sbjct: 127 GSIEEDAER------RDFTFNAMYYSVADFTVKDFANGLEAIEKREVRLIGDPEVRYRED 180
Query: 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICL 287
R+LR +R A +L + D + L+S + + +R+ E + G E + +
Sbjct: 181 PVRMLRAVRFATKLSMRISDDTAAPIKQLASLLNNIPAARLFEETLKLFLSGQGEKTFLM 240
Query: 288 LRRYNLLKILLPFHAAYLDQQ 308
LR Y L+ L P A +++ +
Sbjct: 241 LREYGLIAPLFPQLAPFIEDE 261
>gi|395229106|ref|ZP_10407422.1| polyA polymerase [Citrobacter sp. A1]
gi|424729205|ref|ZP_18157807.1| polya polymerase [Citrobacter sp. L17]
gi|394717159|gb|EJF22857.1| polyA polymerase [Citrobacter sp. A1]
gi|422895929|gb|EKU35715.1| polya polymerase [Citrobacter sp. L17]
Length = 454
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 149/323 (46%), Gaps = 37/323 (11%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 28 ISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRN 87
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F H EG E +LL +G E
Sbjct: 88 CRLVGRRFRLAHVMFGPEIIEVATFRG---HHEGSEADRTTSQRGQNGMLLRDNIFGSIE 144
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL +R + + ED R+
Sbjct: 145 EDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLEEGIIRLIGNPETRYREDPVRM 198
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L + + + L++ + + +R+ E +L G + LR Y
Sbjct: 199 LRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARLFEEALKLLQAGYGYETYKKLREY 258
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWV 343
+L + L P Y + ++PM ++ ++ N D ++ D PA W
Sbjct: 259 SLFQPLFPTITRYFTED-----GDSPMERIIAQVLKNTDNRINNDMRVNPAFLFAAMFWY 313
Query: 344 GLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 314 PLLEAAQKIAQESGLAYYDAFAL 336
>gi|218552724|ref|YP_002385637.1| poly(A) polymerase I [Escherichia coli IAI1]
gi|218693609|ref|YP_002401276.1| poly(A) polymerase [Escherichia coli 55989]
gi|293476802|ref|ZP_06665210.1| poly(A) polymerase [Escherichia coli B088]
gi|332281167|ref|ZP_08393580.1| poly(A) polymerase I [Shigella sp. D9]
gi|407467599|ref|YP_006785959.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407483685|ref|YP_006780834.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 2011C-3493]
gi|410484225|ref|YP_006771771.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 2009EL-2050]
gi|417803485|ref|ZP_12450525.1| poly(A) polymerase I [Escherichia coli O104:H4 str. LB226692]
gi|417831245|ref|ZP_12477773.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 01-09591]
gi|418942377|ref|ZP_13495656.1| poly(A) polymerase I [Escherichia coli O157:H43 str. T22]
gi|419874095|ref|ZP_14396049.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9534]
gi|419880088|ref|ZP_14401497.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9545]
gi|419891839|ref|ZP_14411880.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9570]
gi|419893423|ref|ZP_14413407.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9574]
gi|419904633|ref|ZP_14423624.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM9942]
gi|419906067|ref|ZP_14425001.1| poly(A) polymerase [Escherichia coli O26:H11 str. CVM10026]
gi|420087253|ref|ZP_14599224.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9602]
gi|420092468|ref|ZP_14604170.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9634]
gi|420100281|ref|ZP_14611461.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9455]
gi|420105971|ref|ZP_14616403.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9553]
gi|420113103|ref|ZP_14622868.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM10021]
gi|420119469|ref|ZP_14628745.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM10030]
gi|420125554|ref|ZP_14634356.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM10224]
gi|424746684|ref|ZP_18174906.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CFSAN001629]
gi|424756677|ref|ZP_18184483.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CFSAN001630]
gi|424774747|ref|ZP_18201757.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CFSAN001632]
gi|443616156|ref|YP_007380012.1| poly(A) polymerase I [Escherichia coli APEC O78]
gi|450209418|ref|ZP_21893932.1| poly(A) polymerase I [Escherichia coli O08]
gi|218350341|emb|CAU96024.1| poly(A) polymerase I [Escherichia coli 55989]
gi|218359492|emb|CAQ97030.1| poly(A) polymerase I [Escherichia coli IAI1]
gi|291321255|gb|EFE60697.1| poly(A) polymerase [Escherichia coli B088]
gi|332103519|gb|EGJ06865.1| poly(A) polymerase I [Shigella sp. D9]
gi|340736114|gb|EGR65164.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 01-09591]
gi|340742031|gb|EGR76172.1| poly(A) polymerase I [Escherichia coli O104:H4 str. LB226692]
gi|375322293|gb|EHS68059.1| poly(A) polymerase I [Escherichia coli O157:H43 str. T22]
gi|388348858|gb|EIL14426.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9570]
gi|388351551|gb|EIL16770.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9534]
gi|388367097|gb|EIL30792.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM9942]
gi|388367357|gb|EIL31041.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9574]
gi|388369896|gb|EIL33462.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9545]
gi|388379997|gb|EIL42623.1| poly(A) polymerase [Escherichia coli O26:H11 str. CVM10026]
gi|394393503|gb|EJE70188.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9602]
gi|394394979|gb|EJE71495.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM10224]
gi|394400486|gb|EJE76400.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9634]
gi|394412989|gb|EJE87075.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM10021]
gi|394417719|gb|EJE91436.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9553]
gi|394420988|gb|EJE94483.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9455]
gi|394431344|gb|EJF03552.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM10030]
gi|406779387|gb|AFS58811.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407055982|gb|AFS76033.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 2011C-3493]
gi|407063634|gb|AFS84681.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 2009EL-2071]
gi|421933603|gb|EKT91390.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CFSAN001632]
gi|421947701|gb|EKU04764.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CFSAN001629]
gi|421949599|gb|EKU06533.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CFSAN001630]
gi|443420664|gb|AGC85568.1| poly(A) polymerase I [Escherichia coli APEC O78]
gi|449323672|gb|EMD13623.1| poly(A) polymerase I [Escherichia coli O08]
Length = 472
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 45 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 104
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 105 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 161
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 162 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 215
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 216 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCE 275
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 276 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 330
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 331 YPLLETAQKIAQESGLTYHDAFAL 354
>gi|415814235|ref|ZP_11505865.1| poly(A) polymerase family protein [Escherichia coli LT-68]
gi|323171311|gb|EFZ56959.1| poly(A) polymerase family protein [Escherichia coli LT-68]
Length = 454
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 125/249 (50%), Gaps = 20/249 (8%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYDTYKLLCE 257
Query: 291 YNLLKILLP 299
Y+L + L P
Sbjct: 258 YHLFQPLFP 266
>gi|261345791|ref|ZP_05973435.1| polyA polymerase [Providencia rustigianii DSM 4541]
gi|282566280|gb|EFB71815.1| polyA polymerase [Providencia rustigianii DSM 4541]
Length = 529
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 14/245 (5%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L G++AYLVGG VRDLLL PKDFD+ T A +QIR+ F
Sbjct: 101 ISRDDISDNALKVLYRLNKNGYEAYLVGGGVRDLLLGLKPKDFDITTNATPEQIRKLFRN 160
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSF------ETVAKH--GEGKETVLLSQIPYGCDEIDL 174
++GRRF + + +IEV++F E K+ + + +LL +G E D
Sbjct: 161 CRLVGRRFRLAHIMFGPEIIEVATFRGHHDQEVDDKNLSSQAQNGMLLRDNIFGSIEDDA 220
Query: 175 VRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRG 234
+R RDFT+NSL+++ + DY NG+ DL+ +R + + ED R++R
Sbjct: 221 IR------RDFTVNSLYYNIDDFSVRDYVNGLQDLKDGVIRLIGDPETRYREDPVRMIRA 274
Query: 235 LRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLL 294
+R A +L + + + L+ + + +R+ E +L G S+ +LR+Y+L
Sbjct: 275 VRFACKLNMRIEPNTAEPIPRLAPLLGEIPSARLFEESLKLLQSGYGYSTYKMLRQYHLF 334
Query: 295 KILLP 299
+ L P
Sbjct: 335 EQLFP 339
>gi|238786773|ref|ZP_04630574.1| Poly(A) polymerase [Yersinia frederiksenii ATCC 33641]
gi|238725141|gb|EEQ16780.1| Poly(A) polymerase [Yersinia frederiksenii ATCC 33641]
Length = 521
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 153/323 (47%), Gaps = 34/323 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + VL L G++AYLVGG VRDLLL + PKDFD+ T+A +Q+R+ F
Sbjct: 91 ISRRDISDNALKVLYRLNKSGYEAYLVGGGVRDLLLGKKPKDFDITTSATPEQVRKLFRN 150
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F + + +++ +LL +G E
Sbjct: 151 CRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQAEDSDKNSSQQAQNGMLLRDNIFGTIE 210
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL+ +R + + ED R+
Sbjct: 211 DDAQR------RDFTINSLYYGISDFALRDYTGGLRDLKEGIIRLIGDPETRYREDPVRM 264
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L +S + + L+S + + +R+ E +L G + L Y
Sbjct: 265 LRAVRFAAKLDMSISAETAEPIPRLASLLHEIPPARLFEESLKLLQSGYGYKTYLKLCEY 324
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCDR---PA---DYTLWV 343
L + L P A + ++PM +L+++ N D + D+ PA LW
Sbjct: 325 QLFQPLFPLIARNFTEH-----HDSPMERILVQVLKNTDHRLHNDKRVNPAFLFAAMLWY 379
Query: 344 GLLSFHQALVSDP----QDAFVV 362
L+ Q L + DAF +
Sbjct: 380 PLIEHAQKLTQESGLAYYDAFAL 402
>gi|153216761|ref|ZP_01950601.1| poly(A) polymerase [Vibrio cholerae 1587]
gi|124114149|gb|EAY32969.1| poly(A) polymerase [Vibrio cholerae 1587]
Length = 417
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 119/235 (50%), Gaps = 18/235 (7%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+L L GF+A+LVGG VRDLLL PKDFDV T A +Q+R+ F +IGRRF +
Sbjct: 1 MLYRLHGAGFEAFLVGGGVRDLLLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAH 60
Query: 135 VHIKGSVIEVSSFETVAKHGEGKET----------VLLSQIPYGCDEIDLVRWRNSIHRD 184
+ ++EV++F H E ++ +LL YG + D R RD
Sbjct: 61 IMFGRDIVEVATFR--GHHQESSQSQNIAAQSEAGMLLRDNVYGTIDEDAER------RD 112
Query: 185 FTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLS 244
FTIN+++++ I+DYA G+ DL +R + + ED R+LR +R A +L
Sbjct: 113 FTINAMYYNIADYSIHDYAGGMEDLEDRLVRLIGDPETRYREDPVRMLRAVRFAVKLDFD 172
Query: 245 FCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP 299
+D + L+ + + +R+ E ML G + L+R+YNL + L P
Sbjct: 173 IEEDTAAPIEQLAPLLRDIPAARLYEESLKMLQAGHGLETYHLMRQYNLFQQLFP 227
>gi|333906705|ref|YP_004480291.1| poly(A) polymerase [Marinomonas posidonica IVIA-Po-181]
gi|333476711|gb|AEF53372.1| poly(A) polymerase [Marinomonas posidonica IVIA-Po-181]
Length = 479
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 133/291 (45%), Gaps = 25/291 (8%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
VL L G+ AYLVGGC+RD L+ PKDFDV+T A +++ F S +IGRRF +
Sbjct: 47 VLYRLNKAGYDAYLVGGCIRDHLIDIEPKDFDVVTNATPEEVHAIFSNSRLIGRRFRLVH 106
Query: 135 VHIKGSVIEVSSFETVAKHGE------------------GKETVLLSQIPYGCDEIDLVR 176
V +IEVS+F E ++L YG E D R
Sbjct: 107 VTFGREIIEVSTFRANTAQEETPSPGATQTSLKDKDSARSTHGIILRDNVYGNIEEDAER 166
Query: 177 WRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLR 236
RDFT N+L+++ I+DY G++D++ ++R + + ED R+LR +R
Sbjct: 167 ------RDFTFNALYYNVQDFSIHDYCGGLADIKNKQIRIIGDPKQRYQEDPVRMLRAIR 220
Query: 237 IAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKI 296
A +LG + ++ ++ + +R+ E+ +L G + LLR Y L +
Sbjct: 221 FAGKLGFQIEASTAAPIKEMAHLLDHIPPARLFEEVLKLLGSGNGIRTFALLREYGLFRY 280
Query: 297 LLPFHAAYLDQQAGKITAENPMMLMRLFFNLD-KLVSCDRPADYTLWVGLL 346
L P A L + + ++R N D ++ S A Y L+ L+
Sbjct: 281 LFPDTDALLQSGWKRDDIDPEAFILRGLKNTDERIQSGKSTAPYFLYAILM 331
>gi|386288405|ref|ZP_10065547.1| poly(A) polymerase [gamma proteobacterium BDW918]
gi|385278594|gb|EIF42564.1| poly(A) polymerase [gamma proteobacterium BDW918]
Length = 458
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 17/257 (6%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
++R I + V++ L +GF+A+LVGG VRDLLL PKDFD+ T A +Q+R F
Sbjct: 38 VSRRHISDAALKVIRKLNDEGFEAFLVGGGVRDLLLGGQPKDFDIATDATPEQVRNAFRN 97
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFE----------TVAKHGEGKETVLLSQIP-YGCDE 171
S IIGRRF I V +IEV++F KH E+ +L++ YG +
Sbjct: 98 SRIIGRRFRIVHVRFGREIIEVTTFRGNHSAPASNPQRNKHSAQTESGMLTRDNVYGSID 157
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RD TIN+L++ +YD+ G+ DL +R + + ED R+
Sbjct: 158 DDAAR------RDLTINALYYSSRDFCVYDFVGGLDDLNNKLIRIIGDPETRYREDPVRM 211
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L K + + L+ + + +R+ E+ + G + L++RY
Sbjct: 212 LRVVRFAAKLDFDIEKHSEAPIKRLAPLLNDIAAARMFDEVIKLFMSGQGLHTYALMQRY 271
Query: 292 NLLKILLPFHAAYLDQQ 308
L L P L Q+
Sbjct: 272 ELFAPLFPATQKMLSQR 288
>gi|416230395|ref|ZP_11628394.1| poly(A) polymerase [Moraxella catarrhalis 46P47B1]
gi|326561273|gb|EGE11632.1| poly(A) polymerase [Moraxella catarrhalis 46P47B1]
Length = 594
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 137/286 (47%), Gaps = 23/286 (8%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T +++L + + +P V+ L+ GF AY+VGG VRD LL PKDFD +T A
Sbjct: 18 THSAKSLRLQKGSLPHSIVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPH 77
Query: 115 QIRRQFH-RSEIIGRRFPICRVHIKGSVIEVSSFETVAK---HGEGKETVLLSQIPYGCD 170
+I+ F R IIGRRF + V+ +IEV++F K H ++ + +G
Sbjct: 78 EIKAIFGGRCRIIGRRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNV-WGDI 136
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDF+IN+L++ P ++ D+ + D+ LR L A + ED R
Sbjct: 137 EQDFAR------RDFSINALYYQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVR 190
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSS-IERLDKSRIMMELNYMLSYGAAESSICLLR 289
+LR LR A+LG F +D+ H + + +E++ R+ E M G + LL
Sbjct: 191 LLRALRFKAKLGFEFDQDLANQFHQDNWTLLEQVSAHRLYDETQKMFGGGYLTPLLPLLF 250
Query: 290 RYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
+ + L+ F P+M++ + N D+ ++ D+
Sbjct: 251 EHGAMSSLMSFAP----------NEPTPLMMV-VAQNTDRRIAADK 285
>gi|333998651|ref|YP_004531263.1| polyA polymerase family protein [Treponema primitia ZAS-2]
gi|333738524|gb|AEF84014.1| polyA polymerase family protein [Treponema primitia ZAS-2]
Length = 407
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 26/248 (10%)
Query: 52 NWKTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTA 111
N+ VDS + IT L++ GF+ Y+VGG VRDL+L + PKDFD+++ A
Sbjct: 28 NFSDVDSDAVNITSR------------LRANGFETYIVGGAVRDLMLGKKPKDFDIVSDA 75
Query: 112 NLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKETVLLSQIPYGCDE 171
+I++ F + +IGRRF + V+ + EV +F ++ K G T YG E
Sbjct: 76 TPSRIKKIFRNARVIGRRFRLVHVYFGPKIFEVCTFRSL-KDGPTSNT-------YGTIE 127
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D++R RDF++N+LF+DP + DY G+ D+R ++R +IP F +D R+
Sbjct: 128 EDVLR------RDFSLNALFYDPGKQVVVDYVGGMKDIREKRIRPIIPLSFIFKDDPVRM 181
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
+R ++ AA G + + + + + SR+ E+ +L +A L +
Sbjct: 182 IRAVKYAATTGFKLPLTLRWTIKKQAHLLAPISPSRLTEEIFKILHSPSAAVITESLESF 241
Query: 292 NLLKILLP 299
L + L P
Sbjct: 242 GLYEYLQP 249
>gi|374620577|ref|ZP_09693111.1| poly(A) polymerase [gamma proteobacterium HIMB55]
gi|374303804|gb|EHQ57988.1| poly(A) polymerase [gamma proteobacterium HIMB55]
Length = 419
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 131/253 (51%), Gaps = 19/253 (7%)
Query: 56 VDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQ 115
+D+++L + + + + + V+ L+ + A++VGG VRDLLL + PKDFDV T A +Q
Sbjct: 4 IDAQSL-VDASALSKSAVAVVTRLRENNYSAFIVGGAVRDLLLGKRPKDFDVATDATPEQ 62
Query: 116 IRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET---------VLLSQIP 166
I F + IIGRRF I V + +IEV++F H EG + +L+
Sbjct: 63 IVALFRGARIIGRRFQIVHVRMGREIIEVTTFR---GHHEGDSSKVAAKSNKGLLIRDNV 119
Query: 167 YGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226
YG + D R RD TIN+L+ DP N IYD +G++D++ +R + + E
Sbjct: 120 YGTLDQDAAR------RDLTINALYLDPVNNLIYDDLDGLADIQRRTIRIIGDPAARYRE 173
Query: 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSIC 286
D R+LR R AA+LG + A+ + + +R+ E + G A S++
Sbjct: 174 DPVRMLRVARFAAKLGFNIDASTQGAIAECRHLLADIPSARLFDEAIKLFMSGHATSTLE 233
Query: 287 LLRRYNLLKILLP 299
L R++LL+ L P
Sbjct: 234 QLIRHDLLETLFP 246
>gi|419304649|ref|ZP_13846566.1| poly(A) polymerase [Escherichia coli DEC11D]
gi|378154303|gb|EHX15379.1| poly(A) polymerase [Escherichia coli DEC11D]
Length = 354
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 27 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 86
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 87 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 143
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 144 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 197
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 198 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 257
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 258 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 312
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 313 YPLLETAQKIAQESGLTYHDAFAL 336
>gi|365103891|ref|ZP_09333552.1| Poly(A) polymerase [Citrobacter freundii 4_7_47CFAA]
gi|363644504|gb|EHL83785.1| Poly(A) polymerase [Citrobacter freundii 4_7_47CFAA]
Length = 454
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 149/323 (46%), Gaps = 37/323 (11%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 28 ISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRN 87
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F H EG E+ +LL +G E
Sbjct: 88 CRLVGRRFRLAHVMFGPEIIEVATFRG---HHEGSESDRTTSQRGQNGMLLRDNIFGSIE 144
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL +R + + ED R+
Sbjct: 145 EDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLEEGIIRLIGNPETRYREDPVRM 198
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L + + + L++ + + +R+ E +L G + LR Y
Sbjct: 199 LRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARLFEEALKLLQAGYGYETYKKLREY 258
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWV 343
+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 259 SLFQPLFPTITRYFTED-----GDSPMERIIAQVLKNTDNRIHNDMRVNPAFLFAAMFWY 313
Query: 344 GLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 314 PLLEAAQKIAQESGLAYYDAFAL 336
>gi|296114047|ref|YP_003627985.1| poly(A) polymerase [Moraxella catarrhalis RH4]
gi|295921741|gb|ADG62092.1| poly(A) polymerase [Moraxella catarrhalis BBH18]
Length = 594
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 137/286 (47%), Gaps = 23/286 (8%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T +++L + + +P V+ L+ GF AY+VGG VRD LL PKDFD +T A
Sbjct: 18 THSAKSLRLQKGSLPHSIVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPH 77
Query: 115 QIRRQFH-RSEIIGRRFPICRVHIKGSVIEVSSFETVAK---HGEGKETVLLSQIPYGCD 170
+I+ F R IIGRRF + V+ +IEV++F K H ++ + +G
Sbjct: 78 EIKAIFGGRCRIIGRRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNV-WGDI 136
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDF+IN+L++ P ++ D+ + D+ LR L A + ED R
Sbjct: 137 EQDFAR------RDFSINALYYQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVR 190
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSS-IERLDKSRIMMELNYMLSYGAAESSICLLR 289
+LR LR A+LG F +D+ H + + +E++ R+ E M G + LL
Sbjct: 191 LLRALRFKAKLGFEFDQDLANQFHQDNWTLLEQVSAHRLYDETQKMFGGGYLTPLLPLLF 250
Query: 290 RYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
+ + L+ F P+M++ + N D+ ++ D+
Sbjct: 251 EHGAMSSLMSFAP----------NEPTPLMMV-VARNTDRRIAADK 285
>gi|421844765|ref|ZP_16277922.1| poly(A) polymerase I [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|411774244|gb|EKS57754.1| poly(A) polymerase I [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|455643738|gb|EMF22862.1| poly(A) polymerase I [Citrobacter freundii GTC 09479]
Length = 437
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 147/317 (46%), Gaps = 33/317 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 11 ISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRN 70
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F H EG E +LL +G E
Sbjct: 71 CRLVGRRFRLAHVMFGPEIIEVATFRG---HHEGSEADRTTSQRGQNGMLLRDNIFGSIE 127
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL +R + + ED R+
Sbjct: 128 EDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLEEGIIRLIGNPETRYREDPVRM 181
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L + + + L++ + + +R+ E +L G + LR Y
Sbjct: 182 LRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARLFEEALKLLQAGYGYETYKKLREY 241
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWV 343
+L + L P Y + ++PM ++ ++ N D ++ D PA W
Sbjct: 242 SLFQPLFPTITRYFTED-----GDSPMERIIAQVLKNTDNRINNDMRVNPAFLFAAMFWY 296
Query: 344 GLLSFHQALVSDPQDAF 360
LL Q + + A+
Sbjct: 297 PLLEAAQKIAQESGLAY 313
>gi|416241426|ref|ZP_11632753.1| poly(A) polymerase [Moraxella catarrhalis BC7]
gi|326572182|gb|EGE22178.1| poly(A) polymerase [Moraxella catarrhalis BC7]
Length = 594
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 137/286 (47%), Gaps = 23/286 (8%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T +++L + + +P V+ L+ GF AY+VGG VRD LL PKDFD +T A
Sbjct: 18 THSAKSLRLQKGSLPHSIVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPH 77
Query: 115 QIRRQFH-RSEIIGRRFPICRVHIKGSVIEVSSFETVAK---HGEGKETVLLSQIPYGCD 170
+I+ F R IIGRRF + V+ +IEV++F K H ++ + +G
Sbjct: 78 EIKAIFGGRCRIIGRRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNV-WGDI 136
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDF+IN+L++ P ++ D+ + D+ LR L A + ED R
Sbjct: 137 EQDFAR------RDFSINALYYQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVR 190
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSS-IERLDKSRIMMELNYMLSYGAAESSICLLR 289
+LR LR A+LG F +D+ H + + +E++ R+ E M G + LL
Sbjct: 191 LLRALRFKAKLGFEFDQDLANQFHQDNWTLLEQVSAHRLYDETQKMFGGGYLTPLLPLLF 250
Query: 290 RYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
+ + L+ F P+M++ + N D+ ++ D+
Sbjct: 251 EHGAMSSLMSFAP----------NEPTPLMMV-VARNTDRRIAADK 285
>gi|416232536|ref|ZP_11628980.1| poly(A) polymerase [Moraxella catarrhalis 12P80B1]
gi|416248213|ref|ZP_11636132.1| poly(A) polymerase [Moraxella catarrhalis BC8]
gi|421780828|ref|ZP_16217315.1| poly(A) polymerase [Moraxella catarrhalis RH4]
gi|326567818|gb|EGE17922.1| poly(A) polymerase [Moraxella catarrhalis 12P80B1]
gi|326568180|gb|EGE18262.1| poly(A) polymerase [Moraxella catarrhalis BC8]
gi|407812124|gb|EKF82911.1| poly(A) polymerase [Moraxella catarrhalis RH4]
Length = 599
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 137/286 (47%), Gaps = 23/286 (8%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T +++L + + +P V+ L+ GF AY+VGG VRD LL PKDFD +T A
Sbjct: 18 THSAKSLRLQKGSLPHSIVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPH 77
Query: 115 QIRRQFH-RSEIIGRRFPICRVHIKGSVIEVSSFETVAK---HGEGKETVLLSQIPYGCD 170
+I+ F R IIGRRF + V+ +IEV++F K H ++ + +G
Sbjct: 78 EIKAIFGGRCRIIGRRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNV-WGDI 136
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDF+IN+L++ P ++ D+ + D+ LR L A + ED R
Sbjct: 137 EQDFAR------RDFSINALYYQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVR 190
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSS-IERLDKSRIMMELNYMLSYGAAESSICLLR 289
+LR LR A+LG F +D+ H + + +E++ R+ E M G + LL
Sbjct: 191 LLRALRFKAKLGFEFDQDLANQFHQDNWTLLEQVSAHRLYDETQKMFGGGYLTPLLPLLF 250
Query: 290 RYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
+ + L+ F P+M++ + N D+ ++ D+
Sbjct: 251 EHGAMSSLMSFAP----------NEPTPLMMV-VAQNTDRRIAADK 285
>gi|416251562|ref|ZP_11637771.1| poly(A) polymerase [Moraxella catarrhalis CO72]
gi|326572823|gb|EGE22808.1| poly(A) polymerase [Moraxella catarrhalis CO72]
Length = 599
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 137/286 (47%), Gaps = 23/286 (8%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T +++L + + +P V+ L+ GF AY+VGG VRD LL PKDFD +T A
Sbjct: 18 THSAKSLRLQKGSLPHSIVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPH 77
Query: 115 QIRRQFH-RSEIIGRRFPICRVHIKGSVIEVSSFETVAK---HGEGKETVLLSQIPYGCD 170
+I+ F R IIGRRF + V+ +IEV++F K H ++ + +G
Sbjct: 78 EIKAIFGGRCRIIGRRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNV-WGDI 136
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDF+IN+L++ P ++ D+ + D+ LR L A + ED R
Sbjct: 137 EQDFAR------RDFSINALYYQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVR 190
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSS-IERLDKSRIMMELNYMLSYGAAESSICLLR 289
+LR LR A+LG F +D+ H + + +E++ R+ E M G + LL
Sbjct: 191 LLRALRFKAKLGFEFDQDLANQFHQDNWTLLEQVSAHRLYDETQKMFGGGYLTPLLPLLF 250
Query: 290 RYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
+ + L+ F P+M++ + N D+ ++ D+
Sbjct: 251 EHGAMSSLMSFAP----------NEPTPLMMV-VAQNTDRRIAADK 285
>gi|420369639|ref|ZP_14870331.1| poly(A) polymerase [Shigella flexneri 1235-66]
gi|391321089|gb|EIQ77845.1| poly(A) polymerase [Shigella flexneri 1235-66]
Length = 436
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 148/317 (46%), Gaps = 33/317 (10%)
Query: 63 ITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR 122
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A Q+R+ F
Sbjct: 11 ISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKLFRN 70
Query: 123 SEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET-----------VLLSQIPYGCDE 171
++GRRF + V +IEV++F H EG E+ +LL +G E
Sbjct: 71 CRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGSESDRTTSQRGQNGMLLRDNIFGSIE 127
Query: 172 IDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARI 231
D R RDFTINSL++ + DY G+ DL +R + + ED R+
Sbjct: 128 EDAQR------RDFTINSLYYSVADFTVRDYVGGMQDLEDGVIRLIGNPETRYREDPVRM 181
Query: 232 LRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRY 291
LR +R AA+L + + + L++ + + +R+ E +L G + LR Y
Sbjct: 182 LRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARLFEEALKLLQAGYGYETYKKLREY 241
Query: 292 NLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLWV 343
+L + L P Y + ++PM ++ ++ N D ++ D PA W
Sbjct: 242 SLFQPLFPTITRYFTED-----GDSPMERIIAQVLKNTDNRINNDMRVNPAFLFAAMFWY 296
Query: 344 GLLSFHQALVSDPQDAF 360
LL Q + + A+
Sbjct: 297 PLLETAQKIAQESGLAY 313
>gi|416256609|ref|ZP_11639785.1| poly(A) polymerase [Moraxella catarrhalis O35E]
gi|326573733|gb|EGE23691.1| poly(A) polymerase [Moraxella catarrhalis O35E]
Length = 599
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 137/286 (47%), Gaps = 23/286 (8%)
Query: 55 TVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLK 114
T +++L + + +P V+ L+ GF AY+VGG VRD LL PKDFD +T A
Sbjct: 18 THSAKSLRLQKGSLPHSIVEVIGTLQKAGFDAYIVGGGVRDSLLGLAPKDFDAVTDARPH 77
Query: 115 QIRRQFH-RSEIIGRRFPICRVHIKGSVIEVSSFETVAK---HGEGKETVLLSQIPYGCD 170
+I+ F R IIGRRF + V+ +IEV++F K H ++ + +G
Sbjct: 78 EIKAIFGGRCRIIGRRFQLAHVYSGREMIEVATFRAPPKDDTHTTDDGMIIRDNV-WGDI 136
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDF+IN+L++ P ++ D+ + D+ LR L A + ED R
Sbjct: 137 EQDFAR------RDFSINALYYQPIKGEVLDFCGALKDIDSHTLRLLGDAKVRIEEDPVR 190
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSS-IERLDKSRIMMELNYMLSYGAAESSICLLR 289
+LR LR A+LG F +D+ H + + +E++ R+ E M G + LL
Sbjct: 191 LLRALRFKAKLGFEFDQDLANQFHQDNWTLLEQVSAHRLYDETQKMFGGGYLTPLLPLLF 250
Query: 290 RYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDR 335
+ + L+ F P+M++ + N D+ ++ D+
Sbjct: 251 EHGAMSSLMSFAP----------NEPTPLMMV-VARNTDRRIAADK 285
>gi|264679761|ref|YP_003279670.1| poly(A) polymerase [Comamonas testosteroni CNB-2]
gi|262210276|gb|ACY34374.1| poly(A) polymerase [Comamonas testosteroni CNB-2]
Length = 521
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 156/298 (52%), Gaps = 30/298 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V++ LK G++AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 36 GIDPNLVDRRAIDVVQTLKRSGYEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKNLFR 95
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKETVLLSQIPYGCDEI 172
R+ IIG+RF I V+ +G VIEVS+F + A+ G E +Q+ +
Sbjct: 96 RAFIIGKRFRIVHVVYGRGRENEVIEVSTFRAFLDNSAAEQVSGNERTSKNQLAGLKHAV 155
Query: 173 D----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D ++R W +++ RDFTIN++++DP + DY GI+D + LR +
Sbjct: 156 DASGRVLRDNVWGPQDQDATRRDFTINAMYYDPETQIVVDYHGGIADAKKKVLRMIGDPA 215
Query: 222 LSFTEDCARILRGLRIAARL-GLSFCKDIDTA--MHSLSSSIERLDKSRIMMELNYMLSY 278
+ ED RI+R +R AA+L G F + TA + ++ + +SR+ E+ +L
Sbjct: 216 TRYREDPVRIIRAVRFAAKLSGKGFKLEAKTAKPLVECEPLLQEVPQSRLFDEMLKLLQT 275
Query: 279 GAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
G A +S+ L+ L + + P +++ A++P + L + D+ V+ +P
Sbjct: 276 GHALASVAQLKELGLSRGIYPLLDVVMER------ADHPFVQAAL-MDTDRRVAEGKP 326
>gi|188533006|ref|YP_001906803.1| poly(A) polymerase I [Erwinia tasmaniensis Et1/99]
gi|188028048|emb|CAO95905.1| Poly(A) polymerase [Erwinia tasmaniensis Et1/99]
Length = 483
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 130/267 (48%), Gaps = 25/267 (9%)
Query: 57 DSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQI 116
DS N I+R I + + VL L G++AYLVGG VRDLLL + PKDFDV T A Q+
Sbjct: 42 DSHN--ISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQM 99
Query: 117 RRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGEGKET--------------VLL 162
R+ F ++GRRF + V +IEV++F H E ++ +LL
Sbjct: 100 RKLFRNCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEAEQQAVDDRNSSQRDQNGMLL 156
Query: 163 SQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 222
+G E D R RD TINSL++ + DY G+SDL+ +R +
Sbjct: 157 RDNIFGTIEDDAQR------RDLTINSLYYSVADFTVRDYVGGLSDLQQGIIRMIGDPET 210
Query: 223 SFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAE 282
+ ED R+LR +R AA+L +S + + L++ + + +R+ E +L G
Sbjct: 211 RYREDPVRMLRVVRFAAKLDMSIAAETGEPIPRLATLLHDIPPARLFEETLKLLQAGYGH 270
Query: 283 SSICLLRRYNLLKILLPFHAAYLDQQA 309
S+ L Y L + L P Y+ +Q
Sbjct: 271 STYLKLLEYQLFQPLFPTITRYVTEQG 297
>gi|322812375|pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii)
gi|322812376|pdb|3AQM|B Chain B, Structure Of Bacterial Protein (Form Ii)
Length = 415
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 151/324 (46%), Gaps = 37/324 (11%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
I+R I + + V+ L G++A+LVGG VRDLLL + PKDFDV T A +Q+R+ F
Sbjct: 11 AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFR 70
Query: 122 RSEIIGRRFPICRVHIKGSVIEVSSFETVAKHGE-----------GKETVLLSQIPYGCD 170
++GRRF + V +IEV++F H E G+ +LL +G
Sbjct: 71 NCRLVGRRFRLAHVMFGPEIIEVATFR---GHHEGNVSDRTTSQRGQNGMLLRDNIFGSI 127
Query: 171 EIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCAR 230
E D R RDFTINSL++ + DY G+ DL+ +R + + ED R
Sbjct: 128 EEDAQR------RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVR 181
Query: 231 ILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRR 290
+LR +R AA+LG+ + + L++ + + +R+ E +L G + LL
Sbjct: 182 MLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCE 241
Query: 291 YNLLKILLPFHAAYLDQQAGKITAENPM--MLMRLFFNLDKLVSCD---RPA---DYTLW 342
Y+L + L P Y + ++PM ++ ++ N D + D PA W
Sbjct: 242 YHLFQPLFPTITRYFTE-----NGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFW 296
Query: 343 VGLLSFHQALVSDP----QDAFVV 362
LL Q + + DAF +
Sbjct: 297 YPLLETAQKIAQESGLTYHDAFAL 320
>gi|320102813|ref|YP_004178404.1| polynucleotide adenylyltransferase [Isosphaera pallida ATCC 43644]
gi|319750095|gb|ADV61855.1| Polynucleotide adenylyltransferase region [Isosphaera pallida ATCC
43644]
Length = 471
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 14/238 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
V++ILK+QG+ AY GGCVRD LL +P D+DV T A +++ + F R+ +G F + R
Sbjct: 38 VVEILKNQGYLAYFAGGCVRDTLLGLIPSDYDVATNATPERVLKLFRRTVNVGLSFGVVR 97
Query: 135 VHIK--GSVIEVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFF 192
V G +EV++F + + +G+ + YG + D +R RDFTIN +F
Sbjct: 98 VVAPKGGWDVEVATFRSDGVYSDGRRP---DSVTYGDAKEDALR------RDFTINGMFM 148
Query: 193 DPF-LNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDT 251
DP +++ D+ G DL LR + FTED R++R +R AAR L+ +
Sbjct: 149 DPLDHDRVIDFVGGRDDLARRILRAIGNPRDRFTEDKLRLIRAVRFAARFDLTMDPLTEQ 208
Query: 252 AMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLP--FHAAYLDQ 307
A+ ++ + + RI E ML++ + ++ L R L+ LLP H AY Q
Sbjct: 209 AIRDMADQLGVVAFERIAQEFRKMLAHSSRARAVSLCRDLGLMPTLLPNLPHEAYQPQ 266
>gi|433676605|ref|ZP_20508697.1| poly(A) polymerase [Xanthomonas translucens pv. translucens DSM
18974]
gi|430818295|emb|CCP39006.1| poly(A) polymerase [Xanthomonas translucens pv. translucens DSM
18974]
Length = 421
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 130/277 (46%), Gaps = 15/277 (5%)
Query: 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICR 134
+L L+ GF AYLVGG VRDLL+ PKDFDV T A +Q+++ F +IGRRF +
Sbjct: 1 MLYRLREAGFGAYLVGGAVRDLLVELQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAH 60
Query: 135 VHIKGSVIEVSSFETVAKHGEGKETV----LLSQIPYGCDEIDLVRWRNSIHRDFTINSL 190
V +IEV++F G G + L+ YG E D VR RDFT N+L
Sbjct: 61 VVYGREIIEVATFRANVDDGSGDRELDNGRLVRDNVYGSIEDDAVR------RDFTCNAL 114
Query: 191 FFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDID 250
++ + DY G +D++ +R + + ED R+LR +R+AA+L
Sbjct: 115 YYAIEDFSVRDYTGGFADVQARLMRMIGDPEQRYREDPVRMLRAVRLAAKLNFEIEPSTA 174
Query: 251 TAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAYL-DQQA 309
+ L+ + +R+ E+ + G +S L RY LL L P AA L ++
Sbjct: 175 EPLPRLAGLLAEAAPARLFEEVLKLFLSGDGVASFEGLERYGLLAALFPESAAALHSNRS 234
Query: 310 GKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVGLL 346
G + ML+ N D V+ D P LL
Sbjct: 235 GALR----RMLIEGLRNTDARVANDEPVSPAFLFALL 267
>gi|299533945|ref|ZP_07047306.1| poly(A) polymerase [Comamonas testosteroni S44]
gi|298718072|gb|EFI59068.1| poly(A) polymerase [Comamonas testosteroni S44]
Length = 521
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 156/298 (52%), Gaps = 30/298 (10%)
Query: 62 GITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFH 121
GI ++ + + V++ LK G++AY+VGG VRDLLL PKDFDV T A +Q++ F
Sbjct: 36 GIDPNLVDRRAIDVVQTLKRSGYEAYIVGGAVRDLLLGLRPKDFDVATDATPEQVKNLFR 95
Query: 122 RSEIIGRRFPICR-VHIKG---SVIEVSSFE-----TVAKHGEGKETVLLSQIPYGCDEI 172
R+ IIG+RF I V+ +G VIEVS+F + A+ G E +Q+ +
Sbjct: 96 RAFIIGKRFRIVHVVYGRGRENEVIEVSTFRAFLDNSAAEQVSGNERTSKNQLAGLKHAV 155
Query: 173 D----LVR---W----RNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAY 221
D ++R W +++ RDFTIN++++DP + DY GI+D + LR +
Sbjct: 156 DASGRVLRDNVWGPQDQDATRRDFTINAMYYDPETQIVVDYHGGIADAKKKVLRMIGDPA 215
Query: 222 LSFTEDCARILRGLRIAARL-GLSFCKDIDTA--MHSLSSSIERLDKSRIMMELNYMLSY 278
+ ED RI+R +R AA+L G F + TA + ++ + +SR+ E+ +L
Sbjct: 216 TRYREDPVRIIRAVRFAAKLSGKGFKLEAKTAKPLVECEPLLQEVPQSRLFDEMLKLLQT 275
Query: 279 GAAESSICLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRP 336
G A +S+ L+ L + + P +++ A++P + L + D+ V+ +P
Sbjct: 276 GHALASVAQLKELGLSRGIYPLLDVVMER------ADHPFVQAAL-MDTDRRVAEGKP 326
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,229,586,197
Number of Sequences: 23463169
Number of extensions: 427680906
Number of successful extensions: 1435279
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3462
Number of HSP's successfully gapped in prelim test: 5583
Number of HSP's that attempted gapping in prelim test: 1396742
Number of HSP's gapped (non-prelim): 26516
length of query: 689
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 539
effective length of database: 8,839,720,017
effective search space: 4764609089163
effective search space used: 4764609089163
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)