Query 005593
Match_columns 689
No_of_seqs 289 out of 1612
Neff 4.3
Searched_HMMs 29240
Date Wed Mar 27 00:55:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m3/005593.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H3_8-8//hhsearch_pdb/005593hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aql_A Poly(A) polymerase; tra 1.0 1 1 494.1 22.3 282 54-344 3-292 (415)
2 1miw_A TRNA CCA-adding enzyme; 1.0 1 1 433.3 21.8 222 70-303 6-229 (404)
3 1ou5_A TRNA CCA-adding enzyme, 1.0 1 1 433.2 19.8 225 68-303 55-288 (448)
4 3h38_A TRNA nucleotidyl transf 1.0 1 1 430.9 27.0 228 63-303 10-252 (441)
5 1vfg_A A-adding enzyme, poly A 1.0 1 1 413.7 22.1 217 75-304 2-228 (390)
6 4e8j_A Lincosamide resistance 1.0 1 1 33.7 5.6 56 67-122 6-65 (161)
7 2fcl_A Hypothetical protein TM 1.0 1 1 28.0 6.3 56 66-122 12-74 (169)
8 2la3_A Uncharacterized protein 1.0 1 1 27.8 4.5 126 70-228 19-164 (191)
9 4gxt_A A conserved functionall 1.0 1 1 18.4 2.7 13 438-450 221-233 (385)
10 4as2_A Phosphorylcholine phosp 1.0 1 1 18.0 2.3 31 67-97 143-173 (327)
No 1
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=1.00 E-value=1 Score=494.09 Aligned_cols=282 Identities=28% Similarity=0.445 Sum_probs=248.6
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCEE
Q ss_conf 01367544766579991499999999988993999832588788199999838993888999999841173235122759
Q 005593 54 KTVDSRNLGITRAMIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPIC 133 (689)
Q Consensus 54 ~~~~~~~~gI~~~~ip~~a~~VL~~L~~~G~eaYLVGGaVRDlLLGr~pkDiDIvT~A~peei~k~F~~~~ivGrrF~i~ 133 (689)
+++++++|||++..+|+.+..|++.|+++|+++|+|||||||+|||++|+||||+|+|+|+++.+.|+++..+|++|+++
T Consensus 3 ~~~~~~~h~i~~~~~~~~~~~v~~~l~~~G~~~ylVGG~VRD~LLg~~~~D~Di~t~a~p~~~~~~f~~~~~~g~~f~~~ 82 (415)
T 3aql_A 3 TVIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLA 82 (415)
T ss_dssp CEECTTTSCCCCGGGSCSCHHHHHHHHHTTCCEEEETHHHHHHHHSSCCSCCEEEESSCHHHHHHHTTTSCCCCCSSSCC
T ss_pred EEECHHHCCCCHHHCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCEEECCCCCEE
T ss_conf 57468867949376899999999999977990999899999997698899988975898999999864370766568779
Q ss_pred EEEECCEEEEEECCCCCCCCCC--CC------CEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 9998999999724654322468--97------405624788888134346532101466544333224999948608173
Q 005593 134 RVHIKGSVIEVSSFETVAKHGE--GK------ETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANG 205 (689)
Q Consensus 134 ~V~~~g~~IEVsTFRte~~~~~--~~------~~V~fs~~~~gtieeDL~~w~DA~RRDFTINALaydp~~g~IiDpfGG 205 (689)
++.+++..+||+|||++.+... +. .......+.+|++++|+ .||||||||||||+.++.|+|||||
T Consensus 83 ~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~tl~eDl------~RRDFTINAla~~~~~~~l~D~~gG 156 (415)
T 3aql_A 83 HVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDA------QRRDFTINSLYYSVADFTVRDYVGG 156 (415)
T ss_dssp EEESSSCEEEEEECCC-----------------------CCCCCHHHHH------TTSSBSGGGCEEETTTCCEECSSSH
T ss_pred EEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH------HCCCCCCEEEEEECCCCEEECCCCC
T ss_conf 9998995799963136555344444421125777413444578888898------6388640257980899936689998
Q ss_pred HHHHHCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 98872494421355644400106768689999999299984999999998334202799989999999999099989999
Q 005593 206 ISDLRCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSI 285 (689)
Q Consensus 206 leDLk~kiIR~Vg~p~~sF~EDPLRILRAiRFAarLGF~Id~eT~~aIre~a~lL~~Is~eRI~~EL~KLL~~~~~~~~L 285 (689)
++||++++||++++|..+|.|||+|||||+||++++||.|+++|..+|++++..+..++.+|++.|+.|||.++++..++
T Consensus 157 ~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~T~~ai~~~~~~l~~is~eRi~~E~~kiL~~~~~~~~l 236 (415)
T 3aql_A 157 MKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETY 236 (415)
T ss_dssp HHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHHHHTHHHHHGGGGGGSCHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHCCEEEECCCHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99996894770588466166589999999999998289999999999999777651489578999999998289889999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99998399434401023222100176788614899999996776663799986213899
Q 005593 286 CLLRRYNLLKILLPFHAAYLDQQAGKITAENPMMLMRLFFNLDKLVSCDRPADYTLWVG 344 (689)
Q Consensus 286 ~lL~e~GLL~~LlPela~~~~q~~~~h~~t~d~~Ll~lL~~LD~li~~~rp~~~slWla 344 (689)
++|+++|+|..+||++..+..+...+|.++++.|++.. ++..+..+.+..+.+++|
T Consensus 237 ~~l~~~GlL~~~lPe~~~i~~~~q~~h~~~v~~h~L~~---~d~~i~~~~~~~~~L~lA 292 (415)
T 3aql_A 237 KLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKN---TDTRIHNDMRVNPAFLFA 292 (415)
T ss_dssp HHHHHTTCSTTTCHHHHTTCCSSSCCHHHHHHHHHHHH---HHHHHHTTCCCCHHHHHH
T ss_pred HHHHHCCCHHHHCHHHHHHHCCCCCCHHHHHHHHHHHH---HHHHHHCCCCCCHHHHHH
T ss_conf 99998187688664499986267854198999999999---999986589999999975
No 2
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=1.00 E-value=1 Score=433.26 Aligned_cols=222 Identities=31% Similarity=0.423 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEECCEEEEEECCCC
Q ss_conf 14999999999889939998325887881999998389938889999998411732351227599998999999724654
Q 005593 70 QPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFET 149 (689)
Q Consensus 70 ~~a~~VL~~L~~~G~eaYLVGGaVRDlLLGr~pkDiDIvT~A~peei~k~F~~~~ivGrrF~i~~V~~~g~~IEVsTFRt 149 (689)
+.+..|++.|+++|+++|+|||||||+|||++|+|+||+|++.|+++.+.|+++..+|.+|+++++..+|..+||+|||+
T Consensus 6 ~~~~~i~~~l~~~g~~~y~VGG~VRD~lLg~~~~D~Di~~~~~~~~~~~~~~~~~~~g~~~gt~~v~~~~~~~ev~t~R~ 85 (404)
T 1miw_A 6 QEALGIIQQLKQHGYDAYFVGGAVRDLLLGRPIGDVDIATSALPEDVMAIFPKTIDVGSKHGTVVVVHKGKAYEVTTFKT 85 (404)
T ss_dssp HHHHHHHHHHHHTTCCEEEESHHHHHHHHTCCCCCCEEEESSCHHHHHHHCSSEEEEEGGGTEEEEEETTEEEEEEECEE
T ss_pred HHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEEECC
T ss_conf 99999999999679939998999999976999999788837989999998654123476788699998996899962046
Q ss_pred CCCCCCC--CCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCEEECCCCCCCCCHH
Q ss_conf 3224689--74056247888881343465321014665443332249999486081739887249442135564440010
Q 005593 150 VAKHGEG--KETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYLSFTED 227 (689)
Q Consensus 150 e~~~~~~--~~~V~fs~~~~gtieeDL~~w~DA~RRDFTINALaydp~~g~IiDpfGGleDLk~kiIR~Vg~p~~sF~ED 227 (689)
+.+..++ +..|.|+ +++++|+ .|||||||||||++ ++.|+|||||++||++++||++++|..+|.||
T Consensus 86 e~~~~~~~~p~~v~~~----~~l~~Dl------~RRDfTiNAla~~~-~g~l~D~~~G~~Dl~~~~ir~~~~p~~~f~eD 154 (404)
T 1miw_A 86 DGDYEDYRRPESVTFV----RSLEEDL------KRRDFTMNAIAMDE-YGTIIDPFGGREAIRRRIIRTVGEAEKRFRED 154 (404)
T ss_dssp CC---------CCEEC----SCHHHHH------HTSSBSGGGCEECT-TCCEECTTCHHHHHHHTEECBSSCHHHHHHHC
T ss_pred CCCCCCCCCCCCCCCC----CCHHHHH------HHCCCCCCHHEECC-CCCEECCCCCHHHHHCCEEEECCCHHHHHHHH
T ss_conf 6777777687634058----7699999------86799821210589-99885899999999689366038867607755
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 6768689999999299984999999998334202799989999999999099989999999983994344010232
Q 005593 228 CARILRGLRIAARLGLSFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAA 303 (689)
Q Consensus 228 PLRILRAiRFAarLGF~Id~eT~~aIre~a~lL~~Is~eRI~~EL~KLL~~~~~~~~L~lL~e~GLL~~LlPela~ 303 (689)
|+|||||+||++++||.|+++|..+|++++..+..+|.+|++.|+.|||.++++..++++|+++|+|.. +|++..
T Consensus 155 PlRiLRa~Rfaa~lgf~i~~~T~~ai~~~~~~l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll~~-lPe~~~ 229 (404)
T 1miw_A 155 ALRMMRAVRFVSELGFALAPDTEQAIVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAY-LPGLAG 229 (404)
T ss_dssp THHHHHHHHHHHHHCCEECHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTTS-STTCSS
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHH-CCCHHH
T ss_conf 999999999999749999999999999977654208988999999999848988999999999634321-721446
No 3
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=1.00 E-value=1 Score=433.21 Aligned_cols=225 Identities=24% Similarity=0.321 Sum_probs=207.6
Q ss_pred CCHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCC----CC-CCCCCCEEEEEECCEEE
Q ss_conf 99149999999998899399983258878819999983899388899999984117----32-35122759999899999
Q 005593 68 IPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHRS----EI-IGRRFPICRVHIKGSVI 142 (689)
Q Consensus 68 ip~~a~~VL~~L~~~G~eaYLVGGaVRDlLLGr~pkDiDIvT~A~peei~k~F~~~----~i-vGrrF~i~~V~~~g~~I 142 (689)
+++.+..|++.|+++|+++|+|||||||+|||++|+|+||+|+++|+++.+.|.+. .. .|.+|+++++..+|..+
T Consensus 55 ~~~~~~~i~~~l~~~g~~~ylVGG~VRD~LLg~~~~D~Di~~~~~p~~~~~~~~~~g~~~~~~~g~~~gt~~v~~~~~~~ 134 (448)
T 1ou5_A 55 FTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENF 134 (448)
T ss_dssp SCTTHHHHHHHHHHTTCCEEEESTTTHHHHHTSCCSSCEEEESSCHHHHHHHHTTTTCCBCCCCCTTCCCEEECTTTTCE
T ss_pred HHHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEE
T ss_conf 77999999999996599199828899999869999987899479899999999974983206767526669999999899
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCEEECCCCCC
Q ss_conf 97246543224689740562478888813434653210146654433322499994860817398872494421355644
Q 005593 143 EVSSFETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPFLNKIYDYANGISDLRCLKLRTLIPAYL 222 (689)
Q Consensus 143 EVsTFRte~~~~~~~~~V~fs~~~~gtieeDL~~w~DA~RRDFTINALaydp~~g~IiDpfGGleDLk~kiIR~Vg~p~~ 222 (689)
||++||++.+...+++.|.|++ ++++|+ .||||||||||||+ +|.|+|||||++||++++||+|++|..
T Consensus 135 ev~t~R~~~~~~~r~~~v~~~~----~l~eDl------~RRDFTINAla~~~-~g~l~D~~gG~~DL~~~~IR~v~d~~~ 203 (448)
T 1ou5_A 135 EITTLRIDVTTDGRHAEVEFTT----DWQKDA------ERRDLTINSMFLGF-DGTLFDYFNGYEDLKNKKVRFVGHAKQ 203 (448)
T ss_dssp EEEECCS------------SSC----CSSCCG------GGSSBGGGSCEECS-SCBEECSSSHHHHTTTTCCCBSSTTTT
T ss_pred EEEEECCCCCCCCCCCCCCCCC----CHHHHH------HHCCCCHHHEEECC-CCCEECCCCCHHHHHCCEEEECCCHHH
T ss_conf 9971033234468787310184----299999------87699702315889-997738999899996791882488677
Q ss_pred CCCHHHHHHHHHHHHHHHH--CC-CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHH-H
Q ss_conf 4001067686899999992--99-984999999998334202799989999999999099989999999983994344-0
Q 005593 223 SFTEDCARILRGLRIAARL--GL-SFCKDIDTAMHSLSSSIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKIL-L 298 (689)
Q Consensus 223 sF~EDPLRILRAiRFAarL--GF-~Id~eT~~aIre~a~lL~~Is~eRI~~EL~KLL~~~~~~~~L~lL~e~GLL~~L-l 298 (689)
+|.|||+|||||+||++++ || .|+++|..+|++++..+..+|.||++.|+.|||.++++..++++|+++|+|..+ |
T Consensus 204 rF~EDPLRiLRa~RFaarl~~gf~~I~~~T~~ai~~~~~~L~~is~ERi~~El~kiL~~~~~~~~l~~L~~~GlL~~i~l 283 (448)
T 1ou5_A 204 RIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGL 283 (448)
T ss_dssp TSSSCTTHHHHHHHHHHHSCSSSSCCCHHHHHHHHHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGGGGTC
T ss_pred HHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECC
T ss_conf 46647999999999999717688883999999999999987527999999999999849988999999997898648648
Q ss_pred HHHHH
Q ss_conf 10232
Q 005593 299 PFHAA 303 (689)
Q Consensus 299 Pela~ 303 (689)
|++..
T Consensus 284 Pe~~~ 288 (448)
T 1ou5_A 284 PANAS 288 (448)
T ss_dssp CCCSC
T ss_pred CCHHH
T ss_conf 63355
No 4
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=1.00 E-value=1 Score=430.87 Aligned_cols=228 Identities=24% Similarity=0.348 Sum_probs=203.9
Q ss_pred CCCCCCCHHHHHHHHHH----HHCCCCEEEECHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCC----CCCCCCCCCEEE
Q ss_conf 66579991499999999----9889939998325887881999998389938889999998411----732351227599
Q 005593 63 ITRAMIPQPSWVVLKIL----KSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANLKQIRRQFHR----SEIIGRRFPICR 134 (689)
Q Consensus 63 I~~~~ip~~a~~VL~~L----~~~G~eaYLVGGaVRDlLLGr~pkDiDIvT~A~peei~k~F~~----~~ivGrrF~i~~ 134 (689)
.+...+|+.++.+++.+ +++|+++|+|||||||+|||++|+|+||+|+++|.++.+.+.. ...+|.+|++++
T Consensus 10 ~l~~~lp~~~~~~l~~l~~~~~~~G~~aylVGG~VRD~LLg~~~~D~Di~t~~~~~~~~~~~~~~~~~~~~~g~~~gt~~ 89 (441)
T 3h38_A 10 LLVERVDPKILNLFRLLGKFGDEVNMPVYVVGGFVRDLLLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTAS 89 (441)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHTCCCCCEEEEESSCHHHHHHHHHTTSCEEEECCSSTTEEE
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEECCCCCCCEEE
T ss_conf 99985899999999999999997599699972999998779999985688379779999999998599750377676799
Q ss_pred EEE-CCEEEEEECCCCCCCCCCCC-CEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC---CCEEEECCCCHHHH
Q ss_conf 998-99999972465432246897-40562478888813434653210146654433322499---99486081739887
Q 005593 135 VHI-KGSVIEVSSFETVAKHGEGK-ETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPF---LNKIYDYANGISDL 209 (689)
Q Consensus 135 V~~-~g~~IEVsTFRte~~~~~~~-~~V~fs~~~~gtieeDL~~w~DA~RRDFTINALaydp~---~g~IiDpfGGleDL 209 (689)
+.+ +|..+||+|||+++|..++. +.|. ++++++|+ .|||||||||||++. .|.|+|||||++||
T Consensus 90 v~~~~g~~~ev~t~R~e~~~~~~~~p~V~-----~~~l~eDl------~RRDFTINAla~~~~~~~~g~liD~~gG~~DL 158 (441)
T 3h38_A 90 LFLKGGLRIDIATARLEYYESPAKLPDVE-----MSTIKKDL------YRRDFTINAMAIKLNPKDFGLLIDFFGGYRDL 158 (441)
T ss_dssp EEETTSCEEEEEECCEECCSSSSSCCEES-----CCCHHHHH------HTSSBGGGSCEEECSGGGTTEEECSSSHHHHH
T ss_pred EEEECCEEEEEECCCCCCCCCCCCCCCCC-----CCCHHHHH------HHCCCHHHHHHCCCCCCCCCEEECCCCCHHHH
T ss_conf 99869968997056642457888788657-----88899999------82662353441256778888376789989899
Q ss_pred HCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 249442135564440010676868999999929998499999999833--420279998999999999909998999999
Q 005593 210 RCLKLRTLIPAYLSFTEDCARILRGLRIAARLGLSFCKDIDTAMHSLS--SSIERLDKSRIMMELNYMLSYGAAESSICL 287 (689)
Q Consensus 210 k~kiIR~Vg~p~~sF~EDPLRILRAiRFAarLGF~Id~eT~~aIre~a--~lL~~Is~eRI~~EL~KLL~~~~~~~~L~l 287 (689)
++++||+++++ +|.|||+|||||+||+++|||.|+++|..+|+..+ ..+..+|.||++.|+.|||.++++..++++
T Consensus 159 ~~~~iR~v~~~--~F~eDplRiLRa~Rfaa~lgf~i~~~t~~~i~~~~~~~~l~~is~eRi~~El~kll~~~~~~~~l~~ 236 (441)
T 3h38_A 159 KEGVIRVLHTL--SFVDDPTRILRAIRFEQRFDFRIEETTERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRR 236 (441)
T ss_dssp HTTEECBSSTT--HHHHCTTHHHHHHHHHHHTTCEECHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HCCEEEECCCC--CHHHCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 19989878987--7222999999999999984899986799999998764510347989999999999858989999999
Q ss_pred HHHCCCCHHHHHHHHH
Q ss_conf 9983994344010232
Q 005593 288 LRRYNLLKILLPFHAA 303 (689)
Q Consensus 288 L~e~GLL~~LlPela~ 303 (689)
|.++|+|..+||++..
T Consensus 237 l~~~glL~~i~Pel~~ 252 (441)
T 3h38_A 237 MAQFDVIKHLFPKTYY 252 (441)
T ss_dssp HHHTTHHHHHSTTCCC
T ss_pred HHHCCCHHHHCCCCCC
T ss_conf 9980986885703145
No 5
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=1.00 E-value=1 Score=413.68 Aligned_cols=217 Identities=28% Similarity=0.406 Sum_probs=194.7
Q ss_pred HHHHHHHCCCCEEEECHHHHHHHHCCCCCCEEEEECCCH----HHHHHHHCCCCCCCCCCCEEEEEECCEEEEEECCCCC
Q ss_conf 999999889939998325887881999998389938889----9999984117323512275999989999997246543
Q 005593 75 VLKILKSQGFQAYLVGGCVRDLLLRRVPKDFDVITTANL----KQIRRQFHRSEIIGRRFPICRVHIKGSVIEVSSFETV 150 (689)
Q Consensus 75 VL~~L~~~G~eaYLVGGaVRDlLLGr~pkDiDIvT~A~p----eei~k~F~~~~ivGrrF~i~~V~~~g~~IEVsTFRte 150 (689)
+.+.++++|+++|+|||||||+|||++|+|+||+|++++ +++.+.|+....+|.+|+++++.++|..+||+|||++
T Consensus 2 ~~~~~~~~g~~~y~VGG~VRD~llg~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~~~~~~e~~~~R~e 81 (390)
T 1vfg_A 2 VGQIAKEMGLRAYIVGGVVRDILLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRE 81 (390)
T ss_dssp HHHHHHHTTCCEEEETHHHHHHHTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEEEEEECCSC
T ss_pred HHHHHHHCCCEEEEECHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEECCCCCEEEEEECCEEEEEECCCCC
T ss_conf 47899976996999884999997698999978998587299999999980996661487767999999979998334766
Q ss_pred CCCCCCC-CEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC---CCEEEECCCCHHHHHCCCEEECCCCCCCCCH
Q ss_conf 2246897-40562478888813434653210146654433322499---9948608173988724944213556444001
Q 005593 151 AKHGEGK-ETVLLSQIPYGCDEIDLVRWRNSIHRDFTINSLFFDPF---LNKIYDYANGISDLRCLKLRTLIPAYLSFTE 226 (689)
Q Consensus 151 ~~~~~~~-~~V~fs~~~~gtieeDL~~w~DA~RRDFTINALaydp~---~g~IiDpfGGleDLk~kiIR~Vg~p~~sF~E 226 (689)
.|..++. +.| ..+++++|+ .|||||||||||++. .|.|+|||||++||++++||++++ .+|.|
T Consensus 82 ~~~~~~~~p~v-----~~~~l~~Dl------~RRDfTiNAla~~~~~~~~g~l~D~~~G~~DL~~~~ir~v~~--~~F~e 148 (390)
T 1vfg_A 82 TYPRPGAYPKV-----EPASLKEDL------IRRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDKVIRVLHP--VSFIE 148 (390)
T ss_dssp C---------C-----CCCCHHHHH------HTSSBGGGSCEEECCGGGTTCEECSSCHHHHHHTTEECBSST--THHHH
T ss_pred CCCCCCCCCCC-----CCCCHHHHH------HHCCCCHHHEEECCCCCCCCEEEECCCCHHHHHCCEEEECCC--CCHHH
T ss_conf 67788878864-----778889998------658875622035456788996872899999996896674880--31433
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 06768689999999299984999999998334--2027999899999999990999899999999839943440102322
Q 005593 227 DCARILRGLRIAARLGLSFCKDIDTAMHSLSS--SIERLDKSRIMMELNYMLSYGAAESSICLLRRYNLLKILLPFHAAY 304 (689)
Q Consensus 227 DPLRILRAiRFAarLGF~Id~eT~~aIre~a~--lL~~Is~eRI~~EL~KLL~~~~~~~~L~lL~e~GLL~~LlPela~~ 304 (689)
||+||||++||++++||.|+++|..+|++++. .+..+|.+|++.|+.|||.++++..++++|+++|+|..+||++...
T Consensus 149 DPlRiLRa~Rfaa~~gf~i~~~T~~~i~~~~~~~~l~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~glL~~~lPe~~~~ 228 (390)
T 1vfg_A 149 DPVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQWN 228 (390)
T ss_dssp CTTHHHHHHHHHHHHTCEECHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHHHSTTCCCC
T ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 88999999999998699878999999999766545400699999999999984898899999999848789971766443
No 6
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus haemolyticus} PDB: 4e8i_A* 4fo1_A*
Probab=1.00 E-value=1 Score=33.69 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHCC---CCCCEEEEECC-CHHHHHHHHCC
Q ss_conf 9991499999999988993999832588788199---99983899388-89999998411
Q 005593 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLLLRR---VPKDFDVITTA-NLKQIRRQFHR 122 (689)
Q Consensus 67 ~ip~~a~~VL~~L~~~G~eaYLVGGaVRDlLLGr---~pkDiDIvT~A-~peei~k~F~~ 122 (689)
-..+.+..+++.|+..|.+.+++|||-=|+++|+ .-.|+||.+.+ +..++.+.+..
T Consensus 6 ~~~~d~~evl~~l~~~~v~~~i~GGwAvD~~~G~~tR~H~DiDi~v~~~d~~~l~~~L~~ 65 (161)
T 4e8j_A 6 VTEKELFYILDLFEHMKVTYWLDGGWGVDVLTGKQQREHRDIDIDFDAQHTQKVIQKLED 65 (161)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEHHHHHHHHHTSCCSCCSEEEEEEEGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHHH
T ss_conf 587999999999985899599986754657628988758972785658769999999987
No 7
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=1.00 E-value=1 Score=27.97 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=36.3
Q ss_pred CCCCHHH----HHHHHHHHHCCCCEEEECHHHHHHHHCCC--CCCEEEEECCC-HHHHHHHHCC
Q ss_conf 7999149----99999999889939998325887881999--99838993888-9999998411
Q 005593 66 AMIPQPS----WVVLKILKSQGFQAYLVGGCVRDLLLRRV--PKDFDVITTAN-LKQIRRQFHR 122 (689)
Q Consensus 66 ~~ip~~a----~~VL~~L~~~G~eaYLVGGaVRDlLLGr~--pkDiDIvT~A~-peei~k~F~~ 122 (689)
.||++.. ..+...|++.|.+-.+||||.= .+-|.+ |+|+||.++.. .+.+.+.|..
T Consensus 12 ~~~~~~~~~~L~~i~~~L~~~~V~~~l~Gs~Al-~~~G~~~~~~DIDi~i~~~da~~~~~~L~~ 74 (169)
T 2fcl_A 12 HMIRPEYLRVLRXIYDRLXNEXVNWVVTGSLSF-ALQGVPVEVHDIDIQTDEEGAYEIERIFSE 74 (169)
T ss_dssp -CCCHHHHHHHHHHHHHHTTSSCCEEEEHHHHH-HHTTCCCCCCSEEEEECHHHHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHH-HHCCCCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 106389999999999999755998997199999-976978899960798632479999999999
No 8
>2la3_A Uncharacterized protein; ATP binding, CTP binding, structural genomics, PSI-biology, structure initiative; NMR {Streptococcus pneumoniae}
Probab=1.00 E-value=1 Score=27.84 Aligned_cols=126 Identities=17% Similarity=0.284 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHCCCC-EEEECHHHHHHHH----CCC----CCCEEEEECC---CHH---HHHHHHCCCCCCCCCCCEEE
Q ss_conf 1499999999988993-9998325887881----999----9983899388---899---99998411732351227599
Q 005593 70 QPSWVVLKILKSQGFQ-AYLVGGCVRDLLL----RRV----PKDFDVITTA---NLK---QIRRQFHRSEIIGRRFPICR 134 (689)
Q Consensus 70 ~~a~~VL~~L~~~G~e-aYLVGGaVRDlLL----Gr~----pkDiDIvT~A---~pe---ei~k~F~~~~ivGrrF~i~~ 134 (689)
+....+|+.+.+.|.. .||++||||..+. |++ .+|+||+-.. +.+ ++.+.. .+.|+-..
T Consensus 19 ~~~m~iL~~~~~L~Lpd~~laAG~vrn~VWn~L~g~~~~~~i~DiDviYFD~d~s~e~e~~~e~~L------~~~~p~~~ 92 (191)
T 2la3_A 19 PDMMAILTIIRDLGLKDSWLAAGSVRNFIWNLLSDKSPFDHETDIDVIFFDPDFSYEETLLLEKKL------REDFPQYQ 92 (191)
T ss_dssp HHHHHHHHHHHHTCCSSCEEETHHHHHHHHGGGTTSCTTCCCSEEEEEECCTTSCHHHHHHHHHHH------HHHCTTSE
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH------HHHCCCCC
T ss_conf 999999999987599643101106676588771499977888742599979999988999999999------98689999
Q ss_pred EEECCEEEEEEC-CCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCC-CCCCCCCCCCC-C--EEEECCCCHHHH
Q ss_conf 998999999724-654322468974056247888881343465321014665-44333224999-9--486081739887
Q 005593 135 VHIKGSVIEVSS-FETVAKHGEGKETVLLSQIPYGCDEIDLVRWRNSIHRDF-TINSLFFDPFL-N--KIYDYANGISDL 209 (689)
Q Consensus 135 V~~~g~~IEVsT-FRte~~~~~~~~~V~fs~~~~gtieeDL~~w~DA~RRDF-TINALaydp~~-g--~IiDpfGGleDL 209 (689)
+ ||-- .|-+ ..+ +...+|.+.++-+ .+-- |.-|++..... + +|+-|| |++||
T Consensus 93 w-------eVkNQArmH---l~~-----~~~~Py~Ss~dAi-------s~wpe~~TAvGvrl~~~~~lel~AP~-Gl~dl 149 (191)
T 2la3_A 93 W-------ELKNQVYMH---QHS-----PHTASYTSSRDAM-------SKYPERCTAVGLRLNEELDFELYVPY-GLEDI 149 (191)
T ss_dssp E-------EEEESTTTT---SSS-----SSCCCCSSHHHHH-------TTSSSTTTSCEEECCTTSCCEEECTT-CTHHH
T ss_pred E-------EEEECEECC---CCC-----CCCCCCCCHHHHH-------HHCHHHHEEEEEEECCCCCEEEECCC-CHHHH
T ss_conf 7-------877232100---679-----9979975899999-------84545453578897799958998776-88889
Q ss_pred HCCCEEECCCCCCCCCHHH
Q ss_conf 2494421355644400106
Q 005593 210 RCLKLRTLIPAYLSFTEDC 228 (689)
Q Consensus 210 k~kiIR~Vg~p~~sF~EDP 228 (689)
-+.+||.-. .|.+|+
T Consensus 150 f~~~vrpnp----~~~~~~ 164 (191)
T 2la3_A 150 LNFQVRPTP----HFLENE 164 (191)
T ss_dssp HTTEECCCH----HHHTCH
T ss_pred HCCEEECCC----CCCCCC
T ss_conf 558342486----544554
No 9
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=1.00 E-value=1 Score=18.42 Aligned_cols=13 Identities=8% Similarity=0.296 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7799899988987
Q 005593 438 KIERNVQQIFDVL 450 (689)
Q Consensus 438 ~~~~~~~~~f~~~ 450 (689)
+.|.-+..++.-+
T Consensus 221 r~~p~~~eLi~~L 233 (385)
T 4gxt_A 221 RTLDEMVDLYRSL 233 (385)
T ss_dssp EECHHHHHHHHHH
T ss_pred EECHHHHHHHHHH
T ss_conf 6677899999999
No 10
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=1.00 E-value=1 Score=18.04 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECHHHHHHH
Q ss_conf 9991499999999988993999832588788
Q 005593 67 MIPQPSWVVLKILKSQGFQAYLVGGCVRDLL 97 (689)
Q Consensus 67 ~ip~~a~~VL~~L~~~G~eaYLVGGaVRDlL 97 (689)
++-+..+.+++.|+++|+++|+|-|..+++.
T Consensus 143 ~~~~~~~~l~~~l~~~G~~v~ivSas~~~~v 173 (327)
T 4as2_A 143 RVFSGQRELYNKLMENGIEVYVISAAHEELV 173 (327)
T ss_dssp EECHHHHHHHHHHHHTTCEEEEEEEEEHHHH
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCHHHH
T ss_conf 3577899999999987998999908808999
Done!